Query 041989
Match_columns 129
No_of_seqs 122 out of 307
Neff 4.6
Searched_HMMs 13730
Date Mon Mar 25 22:16:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041989.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/041989hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1hcia4 a.7.1.1 (A:633-746) al 77.8 2.2 0.00016 26.9 5.2 51 66-116 14-64 (114)
2 d1nkpa_ a.38.1.1 (A:) Myc prot 69.5 9.7 0.0007 23.3 7.5 28 88-115 51-78 (88)
3 d1uklc_ a.38.1.1 (C:) SREBP-2 67.9 4 0.00029 23.9 4.3 26 88-113 32-57 (61)
4 d1am9a_ a.38.1.1 (A:) SREBP-1a 65.7 5.6 0.00041 24.3 4.8 31 87-117 48-78 (80)
5 d1nkpb_ a.38.1.1 (B:) Max prot 43.6 18 0.0013 21.8 4.4 30 87-116 45-74 (83)
6 d1nlwa_ a.38.1.1 (A:) Mad prot 40.8 24 0.0018 20.9 4.7 29 88-116 46-74 (79)
7 d2otaa1 a.284.1.1 (A:7-68) Hyp 35.7 15 0.0011 22.2 2.9 20 53-72 35-54 (62)
8 d1urfa_ a.2.6.1 (A:) Protein k 32.6 51 0.0037 20.3 6.4 49 47-111 24-72 (81)
9 d3coqa1 g.38.1.1 (A:8-48) Gal4 31.4 11 0.00081 20.1 1.7 15 11-25 2-16 (41)
10 d1zmec1 g.38.1.1 (C:31-66) PUT 30.3 13 0.00093 19.7 1.8 15 11-25 2-16 (36)
11 d1pyia1 g.38.1.1 (A:30-71) PPR 29.5 15 0.0011 19.9 2.0 17 10-26 2-18 (42)
12 d3alca_ g.38.1.1 (A:) Ethanol 26.6 19 0.0014 20.8 2.3 19 6-24 7-25 (65)
13 d1uuja_ a.221.1.1 (A:) Lissenc 25.6 19 0.0014 22.3 2.2 20 90-109 56-75 (76)
14 d1fxkc_ a.2.5.1 (C:) Prefoldin 25.3 60 0.0043 20.4 4.9 23 91-113 10-32 (133)
15 d1lrza1 a.2.7.4 (A:245-309) Me 24.7 48 0.0035 19.7 4.0 23 91-113 5-27 (65)
16 d1clda_ g.38.1.1 (A:) CD2-Lac9 23.8 16 0.0011 18.8 1.3 16 11-26 1-16 (33)
17 d1quua1 a.7.1.1 (A:1-124) alph 23.4 73 0.0053 19.1 5.9 37 79-115 38-74 (124)
18 d1slqa_ f.47.1.1 (A:) VP4 memb 23.0 30 0.0022 26.2 3.3 34 81-114 229-262 (270)
19 d2gycw1 a.2.2.1 (W:1-60) Ribos 22.4 23 0.0017 20.4 2.1 25 98-122 11-35 (60)
20 d1r8ia_ a.8.7.1 (A:) Typo IV s 22.1 53 0.0038 22.0 4.3 26 90-115 9-34 (187)
21 d1r73a_ a.2.2.1 (A:) Ribosomal 21.2 40 0.0029 19.7 3.1 21 99-119 12-32 (66)
22 d1vf6a_ a.194.1.1 (A:) Associa 20.8 44 0.0032 19.7 3.1 21 88-108 36-56 (58)
23 d1st6a4 a.24.9.1 (A:372-488) V 20.7 1.1E+02 0.0079 20.1 5.6 55 67-121 11-83 (117)
24 d1wyua1 c.67.1.7 (A:1-437) Gly 20.6 21 0.0016 28.1 2.1 34 31-65 2-35 (437)
25 d1fxka_ a.2.5.1 (A:) Prefoldin 20.5 63 0.0046 20.0 4.1 22 91-112 81-102 (107)
26 d2dk8a1 a.4.5.85 (A:8-75) DNA- 20.5 27 0.002 21.3 2.1 25 52-76 27-51 (68)
No 1
>d1hcia4 a.7.1.1 (A:633-746) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]}
Probab=77.80 E-value=2.2 Score=26.87 Aligned_cols=51 Identities=8% Similarity=0.196 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHhhcccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041989 66 SEAVSSMVYEANARFHDPVRGCVGAISSLQQQVESLQAQLALAQAEVEQMR 116 (129)
Q Consensus 66 ~~a~~Sl~YEA~aR~rDPVyGc~G~I~~Lq~qi~~lq~eL~~~~~el~~~r 116 (129)
.+-+.+-+-|+..-+.+|++|-.+.|..+..+.+.++.+|..-+.+|..+.
T Consensus 14 a~~~~~Wi~e~~~~l~~~~~~~~~~ve~~l~~h~~~e~el~~~~~~i~~l~ 64 (114)
T d1hcia4 14 ANAIGPWIQNKMEEIARSSIQITGALEDQMNQLKQYEHNIINYKNNIDKLE 64 (114)
T ss_dssp HHHHHHHHHHHHHHHHSCSCTTTTSTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666677888888899999999999999999999999999998888543
No 2
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=69.48 E-value=9.7 Score=23.33 Aligned_cols=28 Identities=25% Similarity=0.258 Sum_probs=20.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041989 88 VGAISSLQQQVESLQAQLALAQAEVEQM 115 (129)
Q Consensus 88 ~G~I~~Lq~qi~~lq~eL~~~~~el~~~ 115 (129)
+-.|..|+.++..+..++..++.+...+
T Consensus 51 ~~yI~~L~~~~~~l~~~~~~l~~~~~~L 78 (88)
T d1nkpa_ 51 TAYILSVQAEEQKLISEEDLLRKRREQL 78 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567778888888887777777666543
No 3
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=67.89 E-value=4 Score=23.90 Aligned_cols=26 Identities=19% Similarity=0.170 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041989 88 VGAISSLQQQVESLQAQLALAQAEVE 113 (129)
Q Consensus 88 ~G~I~~Lq~qi~~lq~eL~~~~~el~ 113 (129)
+-.|..|+.++..|++|+..++.+..
T Consensus 32 i~YI~~Lq~~~~~L~~e~~~L~~~~~ 57 (61)
T d1uklc_ 32 IDYIKYLQQVNHKLRQENMVLKLANQ 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36788899999999888888877764
No 4
>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}
Probab=65.70 E-value=5.6 Score=24.26 Aligned_cols=31 Identities=16% Similarity=0.185 Sum_probs=25.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 041989 87 CVGAISSLQQQVESLQAQLALAQAEVEQMRM 117 (129)
Q Consensus 87 c~G~I~~Lq~qi~~lq~eL~~~~~el~~~r~ 117 (129)
.+-.|..|+.+++.|..+...++.++...+.
T Consensus 48 a~~yI~~L~~~~~~L~~e~~~lk~~~~~~~~ 78 (80)
T d1am9a_ 48 AIDYIRFLQHSNQKLKQENLSLRTAVHKSKS 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Confidence 4567889999999999999999888876553
No 5
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=43.57 E-value=18 Score=21.76 Aligned_cols=30 Identities=7% Similarity=0.087 Sum_probs=22.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041989 87 CVGAISSLQQQVESLQAQLALAQAEVEQMR 116 (129)
Q Consensus 87 c~G~I~~Lq~qi~~lq~eL~~~~~el~~~r 116 (129)
.+-.|..|++++..++.++..++.+....+
T Consensus 45 A~~yI~~L~~~~~~l~~~~~~l~~~~~~L~ 74 (83)
T d1nkpb_ 45 ATEYIQYMRRKNHTHQQDIDDLKRQNALLE 74 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678888888888888888877665444
No 6
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=40.75 E-value=24 Score=20.89 Aligned_cols=29 Identities=17% Similarity=0.139 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041989 88 VGAISSLQQQVESLQAQLALAQAEVEQMR 116 (129)
Q Consensus 88 ~G~I~~Lq~qi~~lq~eL~~~~~el~~~r 116 (129)
+-.|..|+.++..+..++..++.+...++
T Consensus 46 ~~yI~~L~~~~~~l~~~~~~L~~~~~~L~ 74 (79)
T d1nlwa_ 46 KLHIKKLEDSDRKAVHQIDQLQREQRHLK 74 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66788888888888888888877776544
No 7
>d2otaa1 a.284.1.1 (A:7-68) Hypothetical protein CPS2611 {Colwellia psychrerythraea [TaxId: 28229]}
Probab=35.75 E-value=15 Score=22.25 Aligned_cols=20 Identities=20% Similarity=0.471 Sum_probs=16.1
Q ss_pred HHHHHhhcCchhhHHHHHHH
Q 041989 53 VNKMLQELQEHQRSEAVSSM 72 (129)
Q Consensus 53 v~k~L~~l~~~~R~~a~~Sl 72 (129)
|+++|..+|+.+|...+++.
T Consensus 35 vTnii~~V~~~qR~~iAe~F 54 (62)
T d2otaa1 35 VTNIIAQVPESKRVAVVDNF 54 (62)
T ss_dssp HHHHHTTSCGGGHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHH
Confidence 46677889999999888765
No 8
>d1urfa_ a.2.6.1 (A:) Protein kinase c-like 1, pkn/prk1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=32.56 E-value=51 Score=20.28 Aligned_cols=49 Identities=16% Similarity=0.180 Sum_probs=29.0
Q ss_pred HhhhchHHHHHhhcCchhhHHHHHHHHHHHhhcccCCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 041989 47 VFGASNVNKMLQELQEHQRSEAVSSMVYEANARFHDPVRGCVGAISSLQQQVESLQAQLALAQAE 111 (129)
Q Consensus 47 vFG~snv~k~L~~l~~~~R~~a~~Sl~YEA~aR~rDPVyGc~G~I~~Lq~qi~~lq~eL~~~~~e 111 (129)
.=|+.||+++++.-...+|... -||+. .+..-.+.|+.|+.+|..++..
T Consensus 24 keGaEnm~k~~~~~~~~DrK~l-----~eaq~-----------~l~eS~~Ki~lLr~~L~~~~q~ 72 (81)
T d1urfa_ 24 KQGAENMIQTYSNGSTKDRKLL-----LTAQQ-----------MLQDSKTKIDIIRMQLRRALQA 72 (81)
T ss_dssp HHHHHHHHHHHHHSSSCCHHHH-----HHHHH-----------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCcccHHHH-----HHHHH-----------HHHHHHHHHHHHHHHHHHHHHh
Confidence 3499999999998665555322 23332 2333455666666666665543
No 9
>d3coqa1 g.38.1.1 (A:8-48) Gal4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=31.40 E-value=11 Score=20.14 Aligned_cols=15 Identities=27% Similarity=0.983 Sum_probs=12.2
Q ss_pred CCChhhHHhhhCCCC
Q 041989 11 SPCAACKLIRRRCAQ 25 (129)
Q Consensus 11 ~~CaaCk~lRR~C~~ 25 (129)
.+|..|+..+.+|..
T Consensus 2 ~AC~~Cr~rK~KCd~ 16 (41)
T d3coqa1 2 QACDICRLKKLKCSK 16 (41)
T ss_dssp CCCHHHHHHTCCCCC
T ss_pred cchHHHHHhCcccCC
Confidence 578888888888864
No 10
>d1zmec1 g.38.1.1 (C:31-66) PUT3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=30.28 E-value=13 Score=19.69 Aligned_cols=15 Identities=20% Similarity=0.713 Sum_probs=10.5
Q ss_pred CCChhhHHhhhCCCC
Q 041989 11 SPCAACKLIRRRCAQ 25 (129)
Q Consensus 11 ~~CaaCk~lRR~C~~ 25 (129)
.+|-.||..+.||..
T Consensus 2 ~aC~~Cr~rK~kCd~ 16 (36)
T d1zmec1 2 VACLSCRKRHIKCPG 16 (36)
T ss_dssp CCCHHHHHHTCCCCC
T ss_pred ccHHHHHHhCCcCCC
Confidence 467777777777754
No 11
>d1pyia1 g.38.1.1 (A:30-71) PPR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=29.54 E-value=15 Score=19.86 Aligned_cols=17 Identities=29% Similarity=0.897 Sum_probs=12.7
Q ss_pred CCCChhhHHhhhCCCCC
Q 041989 10 LSPCAACKLIRRRCAQD 26 (129)
Q Consensus 10 ~~~CaaCk~lRR~C~~~ 26 (129)
..+|..|+..+.+|...
T Consensus 2 r~aC~~Cr~rK~kCd~~ 18 (42)
T d1pyia1 2 RTACKRCRLKKIKCDQE 18 (42)
T ss_dssp CCCCHHHHHHTCCCCCC
T ss_pred cHHHHHHHHhCcCCCCc
Confidence 35688888888888653
No 12
>d3alca_ g.38.1.1 (A:) Ethanol regulon transcriptional activator ALCR DNA-binding domain {Emericella nidulans, also known as Aspergillus nidulans [TaxId: 162425]}
Probab=26.55 E-value=19 Score=20.80 Aligned_cols=19 Identities=32% Similarity=0.782 Sum_probs=15.6
Q ss_pred CCCCCCCChhhHHhhhCCC
Q 041989 6 RQGALSPCAACKLIRRRCA 24 (129)
Q Consensus 6 ~~g~~~~CaaCk~lRR~C~ 24 (129)
+.....+|-.||..+.+|.
T Consensus 7 r~R~~~AC~~CR~rK~kCd 25 (65)
T d3alca_ 7 RRRQNHSCDPCRKGKRRCD 25 (65)
T ss_dssp SSSSCCSCHHHHHTTCCCS
T ss_pred CcCcCHhHHHHHhccccCC
Confidence 3456679999999999995
No 13
>d1uuja_ a.221.1.1 (A:) Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=25.64 E-value=19 Score=22.34 Aligned_cols=20 Identities=30% Similarity=0.444 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 041989 90 AISSLQQQVESLQAQLALAQ 109 (129)
Q Consensus 90 ~I~~Lq~qi~~lq~eL~~~~ 109 (129)
.|-.||.+|.+|++++..+|
T Consensus 56 SViRLQkKImdLE~~~~~lq 75 (76)
T d1uuja_ 56 SVIRLQKKVMELESKLNEAK 75 (76)
T ss_dssp CHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 36679999999999988765
No 14
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=25.31 E-value=60 Score=20.44 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 041989 91 ISSLQQQVESLQAQLALAQAEVE 113 (129)
Q Consensus 91 I~~Lq~qi~~lq~eL~~~~~el~ 113 (129)
+..|+++++.+++++..++..+.
T Consensus 10 ~~~l~~~l~~l~~~i~~l~~~~~ 32 (133)
T d1fxkc_ 10 LNIYQSQVELIQQQMEAVRATIS 32 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555554444
No 15
>d1lrza1 a.2.7.4 (A:245-309) Methicillin resistance protein FemA probable tRNA-binding arm {Staphylococcus aureus [TaxId: 1280]}
Probab=24.75 E-value=48 Score=19.66 Aligned_cols=23 Identities=26% Similarity=0.406 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 041989 91 ISSLQQQVESLQAQLALAQAEVE 113 (129)
Q Consensus 91 I~~Lq~qi~~lq~eL~~~~~el~ 113 (129)
|..|+.+...|..+|+.+.+.|.
T Consensus 5 l~~L~~~~~~L~~~i~k~~~~le 27 (65)
T d1lrza1 5 IKELNEERDILNKDLNKALKDIE 27 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777777777777665
No 16
>d1clda_ g.38.1.1 (A:) CD2-Lac9 {Milk yeast (Kluyveromyces lactis) [TaxId: 28985]}
Probab=23.83 E-value=16 Score=18.77 Aligned_cols=16 Identities=25% Similarity=0.875 Sum_probs=13.0
Q ss_pred CCChhhHHhhhCCCCC
Q 041989 11 SPCAACKLIRRRCAQD 26 (129)
Q Consensus 11 ~~CaaCk~lRR~C~~~ 26 (129)
.+|..|+..+.+|...
T Consensus 1 rAC~~Cr~rK~kCd~~ 16 (33)
T d1clda_ 1 QACDACRKKKWKCSKT 16 (33)
T ss_dssp CCCHHHHHSCCCCCCC
T ss_pred CChHHHHHhcCccCcc
Confidence 3689999999999754
No 17
>d1quua1 a.7.1.1 (A:1-124) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.44 E-value=73 Score=19.09 Aligned_cols=37 Identities=24% Similarity=0.306 Sum_probs=31.8
Q ss_pred cccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041989 79 RFHDPVRGCVGAISSLQQQVESLQAQLALAQAEVEQM 115 (129)
Q Consensus 79 R~rDPVyGc~G~I~~Lq~qi~~lq~eL~~~~~el~~~ 115 (129)
...+|+..-+-.|..++.+.+.++.++...+..+..+
T Consensus 38 ~~~~~~~~d~~~v~~l~~~h~~~~~~i~~~~~~v~~l 74 (124)
T d1quua1 38 LQKDYESASLTEVRALLRKHEAFESDLAAHQDRVEQI 74 (124)
T ss_dssp HCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCCCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 4477888899999999999999999999988887744
No 18
>d1slqa_ f.47.1.1 (A:) VP4 membrane interaction domain {Rhesus rotavirus [TaxId: 10969]}
Probab=23.05 E-value=30 Score=26.21 Aligned_cols=34 Identities=18% Similarity=0.356 Sum_probs=27.7
Q ss_pred cCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041989 81 HDPVRGCVGAISSLQQQVESLQAQLALAQAEVEQ 114 (129)
Q Consensus 81 rDPVyGc~G~I~~Lq~qi~~lq~eL~~~~~el~~ 114 (129)
+-|+--.+-+=..|++||.+|+.|...+-+|++-
T Consensus 229 qTpi~Ns~TVrqDLErqi~dLr~efN~ls~eiai 262 (270)
T d1slqa_ 229 QTPITNSVTVRQDLERQLGELREEFNALSQEIAM 262 (270)
T ss_dssp CCCCBCCEECCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cCCccCceeehHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556667789999999999999999999873
No 19
>d2gycw1 a.2.2.1 (W:1-60) Ribosomal protein L29 (L29p) {Escherichia coli [TaxId: 562]}
Probab=22.37 E-value=23 Score=20.44 Aligned_cols=25 Identities=32% Similarity=0.287 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCC
Q 041989 98 VESLQAQLALAQAEVEQMRMRLISP 122 (129)
Q Consensus 98 i~~lq~eL~~~~~el~~~r~~~~~~ 122 (129)
.++|..+|..++.+|...|+|+..-
T Consensus 11 ~~eL~~~l~~l~~el~~lRfq~~~g 35 (60)
T d2gycw1 11 VEELNTELLNLLREQFNLRMQAASG 35 (60)
T ss_dssp HHHHHHHHHHHHHHHHHCCCSTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 4678888999999999999887543
No 20
>d1r8ia_ a.8.7.1 (A:) Typo IV secretion system protein TraC {Escherichia coli [TaxId: 562]}
Probab=22.08 E-value=53 Score=22.04 Aligned_cols=26 Identities=31% Similarity=0.445 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041989 90 AISSLQQQVESLQAQLALAQAEVEQM 115 (129)
Q Consensus 90 ~I~~Lq~qi~~lq~eL~~~~~el~~~ 115 (129)
.|..+..+|+.++.||..++.++..+
T Consensus 9 ql~q~~~ql~~~k~Ql~q~k~~~~s~ 34 (187)
T d1r8ia_ 9 QLEQMAQQLEQLKSQLETQKNMYESM 34 (187)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677888888888888888887743
No 21
>d1r73a_ a.2.2.1 (A:) Ribosomal protein L29 (L29p) {Thermotoga maritima [TaxId: 2336]}
Probab=21.22 E-value=40 Score=19.73 Aligned_cols=21 Identities=24% Similarity=0.428 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHhhcc
Q 041989 99 ESLQAQLALAQAEVEQMRMRL 119 (129)
Q Consensus 99 ~~lq~eL~~~~~el~~~r~~~ 119 (129)
++|+.+|..++.||..+|+++
T Consensus 12 ~eL~~~l~~l~~el~~LRfq~ 32 (66)
T d1r73a_ 12 EELKNLLEEKKRQLMELRFQL 32 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666665
No 22
>d1vf6a_ a.194.1.1 (A:) Associated tight junction protein Pals-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.81 E-value=44 Score=19.74 Aligned_cols=21 Identities=33% Similarity=0.438 Sum_probs=16.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 041989 88 VGAISSLQQQVESLQAQLALA 108 (129)
Q Consensus 88 ~G~I~~Lq~qi~~lq~eL~~~ 108 (129)
+-.|..||+-|.+|+.|+..+
T Consensus 36 F~qiL~lQ~SiqqLk~Qvn~~ 56 (58)
T d1vf6a_ 36 FNQILTLQQSIKQLKGQLNHI 56 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 457888888888888887653
No 23
>d1st6a4 a.24.9.1 (A:372-488) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=20.73 E-value=1.1e+02 Score=20.05 Aligned_cols=55 Identities=15% Similarity=0.215 Sum_probs=36.3
Q ss_pred HHHHHHHHHHhhcccCCCCcchHHHH--H----------------HHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 041989 67 EAVSSMVYEANARFHDPVRGCVGAIS--S----------------LQQQVESLQAQLALAQAEVEQMRMRLIS 121 (129)
Q Consensus 67 ~a~~Sl~YEA~aR~rDPVyGc~G~I~--~----------------Lq~qi~~lq~eL~~~~~el~~~r~~~~~ 121 (129)
.++.+-+-.|.-|+.||=-|-+|.-. . -...|-.+-.||..+-.+|+.+|.+..-
T Consensus 11 ~~i~~kleqA~~WL~nP~~gg~Ge~AiR~il~earkva~~~~~P~~r~~il~lc~ei~~lt~qLadLr~~GkG 83 (117)
T d1st6a4 11 QAIAKKIDAAQNWLADPNGGSEGEEHIRGIMSEARKVAELCEEPKERDDILRSLGEISALTAKLSDLRRHGKG 83 (117)
T ss_dssp HHHHHHHHHHHHHHTCCSCCSSTHHHHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 56777788888888888777666421 1 1345556666777777777766665543
No 24
>d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating) subunit 1 {Thermus thermophilus [TaxId: 274]}
Probab=20.61 E-value=21 Score=28.10 Aligned_cols=34 Identities=15% Similarity=0.351 Sum_probs=28.5
Q ss_pred CCCCCCChHHHHHHHHHhhhchHHHHHhhcCchhh
Q 041989 31 PYFPADEPQKFASVHKVFGASNVNKMLQELQEHQR 65 (129)
Q Consensus 31 PyFp~~~~~~F~~vhkvFG~snv~k~L~~l~~~~R 65 (129)
||.|.. +++...+-+..|+++|-.++.++|++.|
T Consensus 2 ~y~p~s-~~d~~~mL~~iG~~s~~dl~~~IP~~~~ 35 (437)
T d1wyua1 2 DYTPHT-EEEIREMLRRVGAASLEDLFAHLPKEIL 35 (437)
T ss_dssp CCCCCC-HHHHHHHHHHHTCSSTGGGGTTSCGGGS
T ss_pred CCCCcC-HHHHHHHHHHcCCCCHHHHHHhccHHHh
Confidence 789988 6677889999999999999988876544
No 25
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=20.49 E-value=63 Score=19.96 Aligned_cols=22 Identities=18% Similarity=0.276 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 041989 91 ISSLQQQVESLQAQLALAQAEV 112 (129)
Q Consensus 91 I~~Lq~qi~~lq~eL~~~~~el 112 (129)
|..|+.++..++.++...+.+|
T Consensus 81 i~~l~~q~~~l~~~l~~~~~~l 102 (107)
T d1fxka_ 81 EKTIERQEERVMKKLQEMQVNI 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444443
No 26
>d2dk8a1 a.4.5.85 (A:8-75) DNA-directed RNA polymerase III subunit RPC6, RPO3F {Mouse (Mus musculus) [TaxId: 10090]}
Probab=20.48 E-value=27 Score=21.33 Aligned_cols=25 Identities=12% Similarity=0.310 Sum_probs=20.3
Q ss_pred hHHHHHhhcCchhhHHHHHHHHHHH
Q 041989 52 NVNKMLQELQEHQRSEAVSSMVYEA 76 (129)
Q Consensus 52 nv~k~L~~l~~~~R~~a~~Sl~YEA 76 (129)
.+.+-|-++++++|..+++.|+-+.
T Consensus 27 dl~~a~p~v~~~qRv~aiN~LLs~g 51 (68)
T d2dk8a1 27 VIQNEMPHIEAQQRAVAINRLLSMG 51 (68)
T ss_dssp HHHHHCTTSCHHHHHHHHHHHHHHT
T ss_pred HHHHHCcCCCHHHHHHHHHHHHHcC
Confidence 3566677788999999999998654
Done!