BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041990
(225 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2L0B|A Chain A, Solution Nmr Structure Of Zinc Finger Domain Of E3
Ubiquitin-Protein Ligase Praja-1 From Homo Sapiens,
Northeast Structural Genomics Consortium (Nesg) Target
Hr4710b
Length = 91
Score = 57.4 bits (137), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 161 IERLERVQIDEDRLR-RQQCLCAICLQEFVVGLQVTRLPCSHIFHGDCVLNWLTKSKSCP 219
I+ L + + ED Q+ C IC E+V G T LPC H FH CV WL KS +CP
Sbjct: 22 IDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCP 81
Query: 220 LCR 222
+CR
Sbjct: 82 VCR 84
>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Ring Finger Protein 126
Length = 78
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 31/45 (68%)
Query: 181 CAICLQEFVVGLQVTRLPCSHIFHGDCVLNWLTKSKSCPLCRSEL 225
C +C +++ +G V +LPC+H+FH C++ WL + SCP+CR L
Sbjct: 18 CPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSL 62
>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain
Length = 69
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 27/45 (60%)
Query: 181 CAICLQEFVVGLQVTRLPCSHIFHGDCVLNWLTKSKSCPLCRSEL 225
C ICL G V RLPC H+FH CV WL +K CP+CR ++
Sbjct: 17 CTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDI 61
>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein
38
Length = 75
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 37/62 (59%)
Query: 163 RLERVQIDEDRLRRQQCLCAICLQEFVVGLQVTRLPCSHIFHGDCVLNWLTKSKSCPLCR 222
+L + + + + +Q LC +C+ +F + LPC+H FH CV WL +++CP+CR
Sbjct: 8 QLPSYRFNPNNHQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICR 67
Query: 223 SE 224
++
Sbjct: 68 AD 69
>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5
Length = 55
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 181 CAICLQEFVVGLQVTRLP-CSHIFHGDCVLNWLTKSKSCPLCR 222
CA+CL E G + LP C H FH +CV WL +CPLCR
Sbjct: 8 CAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCR 50
>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger
Protein 24
Length = 74
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 26/43 (60%)
Query: 180 LCAICLQEFVVGLQVTRLPCSHIFHGDCVLNWLTKSKSCPLCR 222
LCA+CL++F ++ PC H FH C++ WL K CPLC
Sbjct: 17 LCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCN 59
>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
Length = 138
Score = 36.2 bits (82), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Query: 181 CAICLQEFVVGLQVTRLPCSHIFHGDCVLNWLTKSKSCPLCRSEL 225
C IC + F+ + L C+H F C+ W+ + CP+CR ++
Sbjct: 56 CIICSEYFI---EAVTLNCAHSFCSYCINEWMKRKIECPICRKDI 97
>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
Length = 138
Score = 35.8 bits (81), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Query: 181 CAICLQEFVVGLQVTRLPCSHIFHGDCVLNWLTKSKSCPLCRSEL 225
C IC + F+ + L C+H F C+ W+ + CP+CR ++
Sbjct: 56 CIICSEYFI---EAVTLNCAHSFCSYCINEWMKRKIECPICRKDI 97
>pdb|2D8T|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 146
Length = 71
Score = 35.4 bits (80), Expect = 0.024, Method: Composition-based stats.
Identities = 22/47 (46%), Positives = 25/47 (53%), Gaps = 7/47 (14%)
Query: 181 CAICLQEFVVGLQVTRLPCSHIFHGDCV--LNWLTKSKSCPLCRSEL 225
CAICLQ V LPC H+F CV +WL K C LCR E+
Sbjct: 18 CAICLQTCV---HPVSLPCKHVFCYLCVKGASWL--GKRCALCRQEI 59
>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 35.4 bits (80), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Query: 181 CAICLQEFVVGLQVTRLPCSHIFHGDCVLNWLTKSKSCPLCRSEL 225
C IC + F+ + L C+H F C+ W+ + CP+CR ++
Sbjct: 67 CIICSEYFI---EAVTLNCAHSFCSYCINEWMKRKIECPICRKDI 108
>pdb|2ECM|A Chain A, Solution Structure Of The Ring Domain Of The Ring Finger
And Chy Zinc Finger Domain-Containing Protein 1 From Mus
Musculus
Length = 55
Score = 34.3 bits (77), Expect = 0.053, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 181 CAICLQEFVVGLQVTR-LPCSHIFHGDCVLNWLTKSKSCPLC 221
C ICL++ V LPC H+ H C L + CPLC
Sbjct: 8 CPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLC 49
>pdb|1CHC|A Chain A, Structure Of The C3hc4 Domain By 1h-Nuclear Magnetic
Resonance Spectroscopy; A New Structural Class Of Zinc-
Finger
Length = 68
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 181 CAICLQEFVVGLQVTRLPCSHIFHGDCVLNWLTKSKSCPLCR 222
C ICL++ LPC H F C+ W+ ++ +CPLC+
Sbjct: 8 CPICLED--PSNYSMALPCLHAFCYVCITRWIRQNPTCPLCK 47
>pdb|3NG2|A Chain A, Crystal Structure Of The Rnf4 Ring Domain Dimer
pdb|3NG2|B Chain B, Crystal Structure Of The Rnf4 Ring Domain Dimer
Length = 71
Score = 33.1 bits (74), Expect = 0.11, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 181 CAICLQEFVVGLQVTRL----PCSHIFHGDCVLNWLTKSKSCPLCRSEL 225
C IC+ + +Q RL C H+F C+ + L + +CP CR ++
Sbjct: 13 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 61
>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 141
Length = 70
Score = 32.7 bits (73), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 197 LPCSHIFHGDCVLNWLTKSKSCPLCRSEL 225
LPC+H F C+ W + ++CP+CR ++
Sbjct: 30 LPCAHSFCQKCIDKWSDRHRNCPICRLQM 58
>pdb|2XEU|A Chain A, Ring Domain
Length = 64
Score = 32.7 bits (73), Expect = 0.19, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 181 CAICLQEFVVGLQVTRL----PCSHIFHGDCVLNWLTKSKSCPLCRSEL 225
C IC+ + +Q RL C H+F C+ + L + +CP CR ++
Sbjct: 6 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 54
>pdb|2CKL|A Chain A, Ring1b-Bmi1 E3 Catalytic Domain Structure
Length = 108
Score = 32.3 bits (72), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
Query: 161 IERLERVQIDEDRLRRQQCLCAICLQEFVVGLQVTRLPCSHIFHGDCVLNWLTKSKSCPL 220
+ R R++I E +C +C F+ T + C H F C++ +L SK CP+
Sbjct: 1 MHRTTRIKITE---LNPHLMCVLCGGYFIDA--TTIIECLHSFCKTCIVRYLETSKYCPI 55
Query: 221 C 221
C
Sbjct: 56 C 56
>pdb|3RPG|B Chain B, Bmi1RING1B-Ubch5c Complex Structure
Length = 117
Score = 32.3 bits (72), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
Query: 161 IERLERVQIDEDRLRRQQCLCAICLQEFVVGLQVTRLPCSHIFHGDCVLNWLTKSKSCPL 220
+ R R++I E +C +C F+ T + C H F C++ +L SK CP+
Sbjct: 1 MHRTTRIKITE---LNPHLMCVLCGGYFIDA--TTIIECLHSFCKTCIVRYLETSKYCPI 55
Query: 221 C 221
C
Sbjct: 56 C 56
>pdb|2JRJ|A Chain A, Solution Structure Of The Human Pirh2 Ring-H2 Domain.
Northeast Structural Genomics Consortium Target Ht2b
Length = 52
Score = 32.3 bits (72), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 181 CAICLQEFVVGLQVTR-LPCSHIFHGDCVLNWLTKSKSCPLC 221
C ICL++ V LPC H+ H C L + CPLC
Sbjct: 8 CPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLC 49
>pdb|2EA6|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 4
Length = 69
Score = 32.0 bits (71), Expect = 0.29, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 181 CAICLQEFVVGLQVTRL----PCSHIFHGDCVLNWLTKSKSCPLCRSEL 225
C IC+ + +Q RL C H+F C+ + L + +CP CR ++
Sbjct: 18 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 66
>pdb|4AP4|A Chain A, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 133
Score = 30.8 bits (68), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 181 CAICLQEFVVGLQVTRL----PCSHIFHGDCVLNWLTKSKSCPLCRSEL 225
C IC+ + +Q RL C H+F C+ + L + +CP CR ++
Sbjct: 10 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 58
Score = 30.8 bits (68), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 181 CAICLQEFVVGLQVTRL----PCSHIFHGDCVLNWLTKSKSCPLCRSEL 225
C IC+ + +Q RL C H+F C+ + L + +CP CR ++
Sbjct: 75 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 123
>pdb|2CKL|B Chain B, Ring1b-Bmi1 E3 Catalytic Domain Structure
Length = 165
Score = 30.8 bits (68), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Query: 180 LCAICLQEFVVGLQVTRLPCSHIFHGDCVLNWL-TKSKSCPLCRSEL 225
+C ICL ++ +T C H F DC++ L + +K CP CR +L
Sbjct: 56 MCPICLD--MLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKL 100
>pdb|2H0D|B Chain B, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin
Ligase Complex
Length = 100
Score = 30.4 bits (67), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Query: 180 LCAICLQEFVVGLQVTRLPCSHIFHGDCVLNWL-TKSKSCPLCRSEL 225
+C ICL ++ +T C H F DC++ L + +K CP CR +L
Sbjct: 36 MCPICLD--MLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKL 80
>pdb|2H0D|A Chain A, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin
Ligase Complex
Length = 97
Score = 30.4 bits (67), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 180 LCAICLQEFVVGLQVTRLPCSHIFHGDCVLNWLTKSKSCPLC 221
+C +C F+ T + C H F C++ +L SK CP+C
Sbjct: 13 MCVLCGGYFIDA--TTIIECLHSFCKTCIVRYLETSKYCPIC 52
>pdb|3RPG|C Chain C, Bmi1RING1B-Ubch5c Complex Structure
Length = 121
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Query: 180 LCAICLQEFVVGLQVTRLPCSHIFHGDCVLNWL-TKSKSCPLCRSEL 225
+C ICL ++ +T C H F DC++ L + +K CP CR +L
Sbjct: 55 MCPICLD--MLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKL 99
>pdb|2ECL|A Chain A, Solution Structure Of The Ring Domain Of The Human
Ring-Box Protein 2
Length = 81
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 199 CSHIFHGDCVLNWLTKSKSCPLCRSEL 225
C+H FH C+ W+ ++ CPLC+ +
Sbjct: 48 CNHSFHNCCMSLWVKQNNRCPLCQQDW 74
>pdb|2Y1M|A Chain A, Structure Of Native C-Cbl
pdb|2Y1M|B Chain B, Structure Of Native C-Cbl
pdb|2Y1M|C Chain C, Structure Of Native C-Cbl
pdb|2Y1M|D Chain D, Structure Of Native C-Cbl
pdb|2Y1M|E Chain E, Structure Of Native C-Cbl
pdb|2Y1M|F Chain F, Structure Of Native C-Cbl
pdb|2Y1N|A Chain A, Structure Of C-Cbl-Zap-70 Peptide Complex
pdb|2Y1N|C Chain C, Structure Of C-Cbl-Zap-70 Peptide Complex
Length = 389
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Query: 180 LCAICLQEFVVGLQVTRLPCSHIFHGDCVLNWL-TKSKSCPLCRSEL 225
LC IC + V PC H+ C+ +W ++ + CP CR E+
Sbjct: 334 LCKICAEN---DKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEI 377
>pdb|1FBV|A Chain A, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 388
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Query: 180 LCAICLQEFVVGLQVTRLPCSHIFHGDCVLNWL-TKSKSCPLCRSEL 225
LC IC + V PC H+ C+ +W ++ + CP CR E+
Sbjct: 334 LCKICAEN---DKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEI 377
>pdb|4A49|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
Length = 84
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Query: 180 LCAICLQEFVVGLQVTRLPCSHIFHGDCVLNWL-TKSKSCPLCRSEL 225
LC IC + V PC H+ C+ +W ++ + CP CR E+
Sbjct: 29 LCKICAEN---DKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEI 72
>pdb|4A4C|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 391
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Query: 180 LCAICLQEFVVGLQVTRLPCSHIFHGDCVLNWL-TKSKSCPLCRSEL 225
LC IC + V PC H+ C+ +W ++ + CP CR E+
Sbjct: 336 LCKICAEN---DKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEI 379
>pdb|4A4B|A Chain A, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
Length = 391
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Query: 180 LCAICLQEFVVGLQVTRLPCSHIFHGDCVLNWL-TKSKSCPLCRSEL 225
LC IC + V PC H+ C+ +W ++ + CP CR E+
Sbjct: 336 LCKICAEN---DKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEI 379
>pdb|2K4D|A Chain A, E2-C-Cbl Recognition Is Necessary But Not Sufficient For
Ubiquitination Activity
Length = 83
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Query: 180 LCAICLQEFVVGLQVTRLPCSHIFHGDCVLNWL-TKSKSCPLCRSEL 225
LC IC + V PC H+ C+ +W ++ + CP CR E+
Sbjct: 26 LCKICAEN---DKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEI 69
>pdb|2Y43|A Chain A, Rad18 Ubiquitin Ligase Ring Domain Structure
pdb|2Y43|B Chain B, Rad18 Ubiquitin Ligase Ring Domain Structure
Length = 99
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 181 CAICLQEFVVGLQVTRLPCSHIFHGDCVLNWLTKSKSCPLC 221
C IC + F + + + + CSH + C+ +L+ CP C
Sbjct: 25 CGICFEYFNIAMIIPQ--CSHNYCSLCIRKFLSYKTQCPTC 63
>pdb|2LGV|A Chain A, Rbx1
Length = 100
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 199 CSHIFHGDCVLNWLTKSKSCPL 220
C+H FH C+ WL + CPL
Sbjct: 67 CNHAFHFHCISRWLKTRQVCPL 88
>pdb|1JM7|A Chain A, Solution Structure Of The Brca1/bard1 Ring-domain
Heterodimer
Length = 112
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 6/48 (12%)
Query: 181 CAICLQEFVVGLQVTRLPCSHIFHGDCVLNWLTKSKS---CPLCRSEL 225
C ICL E + T+ C HIF C+L L + K CPLC++++
Sbjct: 24 CPICL-ELIKEPVSTK--CDHIFCKFCMLKLLNQKKGPSQCPLCKNDI 68
>pdb|4A0K|B Chain B, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 117
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 199 CSHIFHGDCVLNWLTKSKSCPL 220
C+H FH C+ WL + CPL
Sbjct: 84 CNHAFHFHCISRWLKTRQVCPL 105
>pdb|1U6G|B Chain B, Crystal Structure Of The Cand1-Cul1-Roc1 Complex
pdb|2HYE|D Chain D, Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Complex
Length = 108
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 199 CSHIFHGDCVLNWLTKSKSCPL 220
C+H FH C+ WL + CPL
Sbjct: 75 CNHAFHFHCISRWLKTRQVCPL 96
>pdb|1LDJ|B Chain B, Structure Of The Cul1-rbx1-skp1-f Boxskp2 Scf Ubiquitin
Ligase Complex
pdb|1LDK|C Chain C, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 90
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 199 CSHIFHGDCVLNWLTKSKSCPL 220
C+H FH C+ WL + CPL
Sbjct: 57 CNHAFHFHCISRWLKTRQVCPL 78
>pdb|4A0C|D Chain D, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0C|F Chain F, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0L|F Chain F, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|I Chain I, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 98
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 199 CSHIFHGDCVLNWLTKSKSCPL 220
C+H FH C+ WL + CPL
Sbjct: 65 CNHAFHFHCISRWLKTRQVCPL 86
>pdb|3DPL|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation.
pdb|3RTR|B Chain B, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|D Chain D, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|F Chain F, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|H Chain H, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|4F52|B Chain B, Structure Of A Glomulin-Rbx1-Cul1 Complex
pdb|4F52|D Chain D, Structure Of A Glomulin-Rbx1-Cul1 Complex
Length = 106
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 199 CSHIFHGDCVLNWLTKSKSCPL 220
C+H FH C+ WL + CPL
Sbjct: 73 CNHAFHFHCISRWLKTRQVCPL 94
>pdb|3DQV|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
pdb|3DQV|Y Chain Y, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
Length = 106
Score = 28.1 bits (61), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 199 CSHIFHGDCVLNWLTKSKSCPL 220
C+H FH C+ WL + CPL
Sbjct: 73 CNHAFHFHCISRWLKTRQVCPL 94
>pdb|2DJB|A Chain A, Solution Structure Of The Ring Domain Of The Human
Polycomb Group Ring Finger Protein 6
Length = 72
Score = 26.9 bits (58), Expect = 8.8, Method: Composition-based stats.
Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 180 LCAICLQEFVVGLQVTRLPCSHIFHGDCVLNWLTKSKSCPLC 221
LC+IC + +T C H F C++ S CP C
Sbjct: 17 LCSICKGYLIDATTITE--CLHTFCKSCIVRHFYYSNRCPKC 56
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.136 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,971,577
Number of Sequences: 62578
Number of extensions: 141548
Number of successful extensions: 368
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 337
Number of HSP's gapped (non-prelim): 44
length of query: 225
length of database: 14,973,337
effective HSP length: 95
effective length of query: 130
effective length of database: 9,028,427
effective search space: 1173695510
effective search space used: 1173695510
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.9 bits)