BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041990
(225 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8LPN7|RNG1L_ARATH E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana
GN=At3g19950 PE=2 SV=1
Length = 328
Score = 77.4 bits (189), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 54/86 (62%), Gaps = 3/86 (3%)
Query: 143 IEEVSESASVAEG---ASREAIERLERVQIDEDRLRRQQCLCAICLQEFVVGLQVTRLPC 199
I++++E+ G AS+ AI+ L V++ +D L+ + CA+C+ EF G V ++PC
Sbjct: 175 IQQLAENDPNRYGTPPASKSAIDALPTVKVTKDMLKSEMNQCAVCMDEFEDGSDVKQMPC 234
Query: 200 SHIFHGDCVLNWLTKSKSCPLCRSEL 225
H+FH DC+L WL SCP+CR EL
Sbjct: 235 KHVFHQDCLLPWLELHNSCPVCRFEL 260
>sp|P0CH30|RING1_GOSHI E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum GN=RING1
PE=2 SV=1
Length = 338
Score = 72.4 bits (176), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 51/86 (59%), Gaps = 3/86 (3%)
Query: 143 IEEVSESASVAEG---ASREAIERLERVQIDEDRLRRQQCLCAICLQEFVVGLQVTRLPC 199
I++++E+ G AS+ AIE L V I + L + CA+C+ +F G + ++PC
Sbjct: 183 IQQLAENDPNRYGTPPASKSAIEALPLVNITKSNLNSEFNQCAVCMDDFEEGTEAKQMPC 242
Query: 200 SHIFHGDCVLNWLTKSKSCPLCRSEL 225
H++H DC+L WL SCP+CR EL
Sbjct: 243 KHLYHKDCLLPWLELHNSCPVCRHEL 268
>sp|Q6GPV5|RN181_XENLA E3 ubiquitin-protein ligase RNF181 OS=Xenopus laevis GN=rnf181 PE=2
SV=1
Length = 156
Score = 70.1 bits (170), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 55/101 (54%), Gaps = 1/101 (0%)
Query: 125 VLRMQVRICAVVDDDDGDIEEVSESASVAEGASREAIERLERVQIDEDRLRRQQCLCAIC 184
+L + + + +D D G ++ + AS++ +E L +V + ++ C +C
Sbjct: 24 LLELARSLLSGMDIDLGAVDFTEWDQRLPPPASKKVVESLPKVTVTPEQ-ADAALKCPVC 82
Query: 185 LQEFVVGLQVTRLPCSHIFHGDCVLNWLTKSKSCPLCRSEL 225
L EF G V +LPC H+FH C+L WL K+ SCPLCR EL
Sbjct: 83 LLEFEEGETVRQLPCEHLFHSACILPWLGKTNSCPLCRHEL 123
>sp|Q5M974|RN181_XENTR E3 ubiquitin-protein ligase RNF181 OS=Xenopus tropicalis GN=rnf181
PE=2 SV=1
Length = 156
Score = 68.9 bits (167), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 55/101 (54%), Gaps = 1/101 (0%)
Query: 125 VLRMQVRICAVVDDDDGDIEEVSESASVAEGASREAIERLERVQIDEDRLRRQQCLCAIC 184
+L + + + +D D G ++ + A+++ +E L +V + ++ C +C
Sbjct: 24 LLELARSLLSGMDIDLGALDFTEWDQRLPPPAAKKVVESLPKVTVTPEQ-ADAALKCPVC 82
Query: 185 LQEFVVGLQVTRLPCSHIFHGDCVLNWLTKSKSCPLCRSEL 225
L EF G V +LPC H+FH C+L WL K+ SCPLCR EL
Sbjct: 83 LLEFEEGETVRQLPCEHLFHSSCILPWLGKTNSCPLCRHEL 123
>sp|Q6DIP3|RN126_XENTR RING finger protein 126 OS=Xenopus tropicalis GN=rnf126 PE=2 SV=1
Length = 311
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 43/70 (61%), Gaps = 1/70 (1%)
Query: 156 ASREAIERLERVQIDEDRLRRQQCLCAICLQEFVVGLQVTRLPCSHIFHGDCVLNWLTKS 215
A E I+ L +QI E+ + C +C +++ VG V +LPC+H+FH DC++ WL +
Sbjct: 203 ADTEKIQALPTIQITEEHVG-SGLECPVCKEDYTVGESVRQLPCNHLFHNDCIIPWLEQH 261
Query: 216 KSCPLCRSEL 225
+CP+CR L
Sbjct: 262 DTCPVCRKSL 271
>sp|O55176|PJA1_MOUSE E3 ubiquitin-protein ligase Praja-1 OS=Mus musculus GN=Pja1 PE=1
SV=3
Length = 578
Score = 65.5 bits (158), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 156 ASREAIERLERVQIDEDRLR-RQQCLCAICLQEFVVGLQVTRLPCSHIFHGDCVLNWLTK 214
AS+E+I+ L + + ED Q+ C IC E+V G T LPC H FH CV WL K
Sbjct: 504 ASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGEVATELPCHHYFHKPCVSIWLQK 563
Query: 215 SKSCPLCR 222
S +CP+CR
Sbjct: 564 SGTCPVCR 571
>sp|Q8NG27|PJA1_HUMAN E3 ubiquitin-protein ligase Praja-1 OS=Homo sapiens GN=PJA1 PE=1
SV=2
Length = 643
Score = 65.1 bits (157), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 156 ASREAIERLERVQIDEDRLR-RQQCLCAICLQEFVVGLQVTRLPCSHIFHGDCVLNWLTK 214
AS+E+I+ L + + ED Q+ C IC E+V G T LPC H FH CV WL K
Sbjct: 569 ASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGEVATELPCHHYFHKPCVSIWLQK 628
Query: 215 SKSCPLCR 222
S +CP+CR
Sbjct: 629 SGTCPVCR 636
>sp|Q9CY62|RN181_MOUSE E3 ubiquitin-protein ligase RNF181 OS=Mus musculus GN=Rnf181 PE=2
SV=1
Length = 165
Score = 65.1 bits (157), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 45/84 (53%), Gaps = 3/84 (3%)
Query: 142 DIEEVSESASVAEGASREAIERLERVQIDEDRLRRQQCLCAICLQEFVVGLQVTRLPCSH 201
D+ V + A++ +E L R I + + C +CL EF V +PC H
Sbjct: 52 DLGLVDWEHHLPPPAAKAVVESLPRTVISSAKADLK---CPVCLLEFEAEETVIEMPCHH 108
Query: 202 IFHGDCVLNWLTKSKSCPLCRSEL 225
+FH +C+L WL+K+ SCPLCR EL
Sbjct: 109 LFHSNCILPWLSKTNSCPLCRHEL 132
>sp|Q8RXD3|AIP2_ARATH E3 ubiquitin-protein ligase AIP2 OS=Arabidopsis thaliana GN=AIP2
PE=1 SV=1
Length = 310
Score = 64.3 bits (155), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 2/75 (2%)
Query: 153 AEGASREAIERLERVQIDEDRLRR--QQCLCAICLQEFVVGLQVTRLPCSHIFHGDCVLN 210
A AS+E +E+L + E+ L++ + C IC + V+G ++ LPC H FH C+
Sbjct: 200 APPASKEVVEKLPVIIFTEELLKKFGAEAECCICKENLVIGDKMQELPCKHTFHPPCLKP 259
Query: 211 WLTKSKSCPLCRSEL 225
WL + SCP+CR EL
Sbjct: 260 WLDEHNSCPICRHEL 274
>sp|Q7T0Q3|R126A_XENLA RING finger protein 126-A OS=Xenopus laevis GN=rnf126-a PE=2 SV=1
Length = 312
Score = 64.3 bits (155), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 43/70 (61%), Gaps = 1/70 (1%)
Query: 156 ASREAIERLERVQIDEDRLRRQQCLCAICLQEFVVGLQVTRLPCSHIFHGDCVLNWLTKS 215
A E I+ L +QI E+ + C +C +++ VG V +LPC+H+FH DC++ WL +
Sbjct: 204 ADNEKIQALPTIQITEEHVG-SGLECPVCKEDYTVGECVRQLPCNHLFHNDCIIPWLEQH 262
Query: 216 KSCPLCRSEL 225
+CP+CR L
Sbjct: 263 DTCPVCRKSL 272
>sp|Q6IRP0|R126B_XENLA RING finger protein 126-B OS=Xenopus laevis GN=rnf126-b PE=2 SV=1
Length = 312
Score = 63.9 bits (154), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 43/70 (61%), Gaps = 1/70 (1%)
Query: 156 ASREAIERLERVQIDEDRLRRQQCLCAICLQEFVVGLQVTRLPCSHIFHGDCVLNWLTKS 215
A + I+ L +QI E+ + C +C +++ VG V +LPC+H+FH DC++ WL +
Sbjct: 204 ADTDKIQALPTIQITEEHVGFG-LECPVCKEDYTVGESVRQLPCNHLFHNDCIIPWLEQH 262
Query: 216 KSCPLCRSEL 225
+CP+CR L
Sbjct: 263 DTCPVCRKSL 272
>sp|Q6AXU4|RN181_RAT E3 ubiquitin-protein ligase RNF181 OS=Rattus norvegicus GN=Rnf181
PE=1 SV=1
Length = 165
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 47/87 (54%), Gaps = 3/87 (3%)
Query: 139 DDGDIEEVSESASVAEGASREAIERLERVQIDEDRLRRQQCLCAICLQEFVVGLQVTRLP 198
D D+ V + A++ +E L R I R + + C +CL EF V +P
Sbjct: 49 DFEDLGLVDWEHHLPPPAAKAVVESLPRTVI---RSSKAELKCPVCLLEFEEEETVIEMP 105
Query: 199 CSHIFHGDCVLNWLTKSKSCPLCRSEL 225
C H+FH +C+L WL+K+ SCPLCR EL
Sbjct: 106 CHHLFHSNCILPWLSKTNSCPLCRHEL 132
>sp|Q4V7B8|RNF44_RAT RING finger protein 44 OS=Rattus norvegicus GN=Rnf44 PE=2 SV=1
Length = 350
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 53/97 (54%), Gaps = 8/97 (8%)
Query: 136 VDDDDGDIEEVSESASVAE--------GASREAIERLERVQIDEDRLRRQQCLCAICLQE 187
+D DD ++E ++AE G ++ IE+L + + D + +Q LC +C +
Sbjct: 245 LDVDDVEMENYEALLNLAERLGDAKPRGLTKADIEQLPSYRFNPDSHQSEQTLCVVCFSD 304
Query: 188 FVVGLQVTRLPCSHIFHGDCVLNWLTKSKSCPLCRSE 224
F V + LPC+H FH CV WL +++CP+CR++
Sbjct: 305 FEVRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRAD 341
>sp|Q9SPL2|CIP8_ARATH E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana GN=CIP8
PE=1 SV=1
Length = 334
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 153 AEGASREAIERLERVQIDEDRLRRQQCLCAICLQEFVVGLQVTRLPCSHIFHGDCVLNWL 212
A A++ AIE LE ++ +CA+C V+G +LPC H +HGDC++ WL
Sbjct: 230 APPAAKSAIEALETFEVSSSE-GEMVMVCAVCKDGMVMGETGKKLPCGHCYHGDCIVPWL 288
Query: 213 TKSKSCPLCRSEL 225
SCP+CR +L
Sbjct: 289 GTRNSCPVCRFQL 301
>sp|Q3T0W3|RN181_BOVIN E3 ubiquitin-protein ligase RNF181 OS=Bos taurus GN=RNF181 PE=2
SV=1
Length = 153
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 152 VAEGASREAIERLERVQIDEDRLRRQQCLCAICLQEFVVGLQVTRLPCSHIFHGDCVLNW 211
+ A++ A+E L R I R + + C +CL EF +PC H+FH +C+L W
Sbjct: 50 LPPPAAKTAVENLPRTVI---RGSQAELKCPVCLLEFEEEETAIEMPCHHLFHSNCILPW 106
Query: 212 LTKSKSCPLCRSEL 225
L+K+ SCPLCR EL
Sbjct: 107 LSKTNSCPLCRHEL 120
>sp|Q3UHJ8|RNF44_MOUSE RING finger protein 44 OS=Mus musculus GN=Rnf44 PE=2 SV=1
Length = 407
Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 53/97 (54%), Gaps = 8/97 (8%)
Query: 136 VDDDDGDIEEVSESASVAE--------GASREAIERLERVQIDEDRLRRQQCLCAICLQE 187
+D DD ++E ++AE G ++ IE+L + + D + +Q LC +C +
Sbjct: 302 LDVDDVEMENYEALLNLAERLGDAKPRGLTKADIEQLPSYRFNPDSHQSEQTLCVVCFSD 361
Query: 188 FVVGLQVTRLPCSHIFHGDCVLNWLTKSKSCPLCRSE 224
F V + LPC+H FH CV WL +++CP+CR++
Sbjct: 362 FEVRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRAD 398
>sp|O43164|PJA2_HUMAN E3 ubiquitin-protein ligase Praja-2 OS=Homo sapiens GN=PJA2 PE=1
SV=4
Length = 708
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 41/69 (59%), Gaps = 3/69 (4%)
Query: 156 ASREAIERLERVQIDEDR--LRRQQCLCAICLQEFVVGLQVTRLPCSHIFHGDCVLNWLT 213
AS+E+I+ L + ED + ++QC C IC E++ T LPC H FH CV WL
Sbjct: 608 ASKESIDGLPETLVLEDHTAIGQEQC-CPICCSEYIKDDIATELPCHHFFHKPCVSIWLQ 666
Query: 214 KSKSCPLCR 222
KS +CP+CR
Sbjct: 667 KSGTCPVCR 675
>sp|Q5R4R1|PJA2_PONAB E3 ubiquitin-protein ligase Praja-2 OS=Pongo abelii GN=PJA2 PE=2
SV=1
Length = 708
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 41/69 (59%), Gaps = 3/69 (4%)
Query: 156 ASREAIERLERVQIDEDR--LRRQQCLCAICLQEFVVGLQVTRLPCSHIFHGDCVLNWLT 213
AS+E+I+ L + ED + ++QC C IC E++ T LPC H FH CV WL
Sbjct: 608 ASKESIDGLPETLVLEDHTAIGQEQC-CPICCSEYIKDDIATELPCHHFFHKPCVSIWLQ 666
Query: 214 KSKSCPLCR 222
KS +CP+CR
Sbjct: 667 KSGTCPVCR 675
>sp|Q80U04|PJA2_MOUSE E3 ubiquitin-protein ligase Praja-2 OS=Mus musculus GN=Pja2 PE=1
SV=2
Length = 707
Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 41/69 (59%), Gaps = 3/69 (4%)
Query: 156 ASREAIERLERVQIDEDR--LRRQQCLCAICLQEFVVGLQVTRLPCSHIFHGDCVLNWLT 213
AS+E+I+ L + ED + ++QC C IC E++ T LPC H FH CV WL
Sbjct: 607 ASKESIDGLPETLVLEDHTAIGQEQC-CPICCSEYIKDDIATELPCHHFFHKPCVSIWLQ 665
Query: 214 KSKSCPLCR 222
KS +CP+CR
Sbjct: 666 KSGTCPVCR 674
>sp|Q63364|PJA2_RAT E3 ubiquitin-protein ligase Praja-2 OS=Rattus norvegicus GN=Pja2
PE=2 SV=1
Length = 707
Score = 62.0 bits (149), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 41/69 (59%), Gaps = 3/69 (4%)
Query: 156 ASREAIERLERVQIDEDR--LRRQQCLCAICLQEFVVGLQVTRLPCSHIFHGDCVLNWLT 213
AS+E+I+ L + ED + ++QC C IC E++ T LPC H FH CV WL
Sbjct: 607 ASKESIDGLPETLVLEDHTAIGQEQC-CPICCSEYIKDDIATELPCHHFFHKPCVSIWLQ 665
Query: 214 KSKSCPLCR 222
KS +CP+CR
Sbjct: 666 KSGTCPVCR 674
>sp|Q9H0F5|RNF38_HUMAN RING finger protein 38 OS=Homo sapiens GN=RNF38 PE=1 SV=4
Length = 515
Score = 61.2 bits (147), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 63/130 (48%), Gaps = 22/130 (16%)
Query: 103 FVEKILSCARAMASDKAFEGYKVLRMQVRICAVVDDDDGDIEEVSESASVAE-------- 154
+V +L A+ +FE +D +DG++E ++AE
Sbjct: 391 YVLSMLPVPPAVGPTFSFE--------------LDVEDGEVENYEALLNLAERLGEAKPR 436
Query: 155 GASREAIERLERVQIDEDRLRRQQCLCAICLQEFVVGLQVTRLPCSHIFHGDCVLNWLTK 214
G ++ IE+L + + + + +Q LC +C+ +F + LPC+H FH CV WL
Sbjct: 437 GLTKADIEQLPSYRFNPNNHQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKA 496
Query: 215 SKSCPLCRSE 224
+++CP+CR++
Sbjct: 497 NRTCPICRAD 506
>sp|Q7ZW78|RN181_DANRE E3 ubiquitin-protein ligase RNF181 OS=Danio rerio GN=rnf181 PE=2
SV=2
Length = 156
Score = 61.2 bits (147), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 50/101 (49%), Gaps = 1/101 (0%)
Query: 125 VLRMQVRICAVVDDDDGDIEEVSESASVAEGASREAIERLERVQIDEDRLRRQQCLCAIC 184
+L + + +D D G + + A++ ++ L V I ++ + C +C
Sbjct: 24 LLELARSLMQGLDIDSGSFDLSDWDQRLPPPAAKAVVQSLPVVIISPEQADKG-VKCPVC 82
Query: 185 LQEFVVGLQVTRLPCSHIFHGDCVLNWLTKSKSCPLCRSEL 225
L EF V +PC H+FH C+L WL K+ SCPLCR EL
Sbjct: 83 LLEFEEQESVREMPCKHLFHTGCILPWLNKTNSCPLCRLEL 123
>sp|Q91YL2|RN126_MOUSE RING finger protein 126 OS=Mus musculus GN=Rnf126 PE=1 SV=1
Length = 313
Score = 60.8 bits (146), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 64/141 (45%), Gaps = 16/141 (11%)
Query: 85 QETLEGILSSVRVPSRPLFVEKILSCARAMASDKAFEGYKVLRMQVRICAVVDDDDGDIE 144
Q+ + GI+S VPS L +L + M G + Q+ +
Sbjct: 151 QQLVNGIISPAAVPSLGLGPWGVLH-SNPMDYAWGANGLDTIITQL------------LN 197
Query: 145 EVSESASVAEGASREAIERLERVQIDEDRLRRQQCLCAICLQEFVVGLQVTRLPCSHIFH 204
+ + A +E I+ L V + E+ + C +C +++ +G V +LPC+H+FH
Sbjct: 198 QFENTGPPP--ADKEKIQALPTVPVTEEHVG-SGLECPVCKEDYALGESVRQLPCNHLFH 254
Query: 205 GDCVLNWLTKSKSCPLCRSEL 225
C++ WL + SCP+CR L
Sbjct: 255 DSCIVPWLEQHDSCPVCRKSL 275
>sp|Q7L0R7|RNF44_HUMAN RING finger protein 44 OS=Homo sapiens GN=RNF44 PE=2 SV=1
Length = 432
Score = 60.8 bits (146), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 54/105 (51%), Gaps = 8/105 (7%)
Query: 128 MQVRICAVVDDDDGDIEEVSESASVAE--------GASREAIERLERVQIDEDRLRRQQC 179
M I +D DD ++E ++AE G ++ IE+L + + D + +Q
Sbjct: 319 MGPTISLDLDVDDVEMENYEALLNLAERLGDAKPRGLTKADIEQLPSYRFNPDSHQSEQT 378
Query: 180 LCAICLQEFVVGLQVTRLPCSHIFHGDCVLNWLTKSKSCPLCRSE 224
LC +C +F + LPC+H FH CV WL +++CP+CR++
Sbjct: 379 LCVVCFSDFEARQLLRVLPCNHEFHTKCVDKWLKANRTCPICRAD 423
>sp|Q8BI21|RNF38_MOUSE RING finger protein 38 OS=Mus musculus GN=Rnf38 PE=2 SV=1
Length = 518
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 62/130 (47%), Gaps = 22/130 (16%)
Query: 103 FVEKILSCARAMASDKAFEGYKVLRMQVRICAVVDDDDGDIEEVSESASVAE-------- 154
+V +L A+ +FE +D +DG++E ++AE
Sbjct: 394 YVLSMLPVPPAVGPTFSFE--------------LDVEDGEVENYEALLNLAERLGEAKPR 439
Query: 155 GASREAIERLERVQIDEDRLRRQQCLCAICLQEFVVGLQVTRLPCSHIFHGDCVLNWLTK 214
G ++ IE+L + + + +Q LC +C+ +F + LPC+H FH CV WL
Sbjct: 440 GLTKADIEQLPSYRFNPSNHQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKG 499
Query: 215 SKSCPLCRSE 224
+++CP+CR++
Sbjct: 500 NRTCPICRAD 509
>sp|Q9P0P0|RN181_HUMAN E3 ubiquitin-protein ligase RNF181 OS=Homo sapiens GN=RNF181 PE=1
SV=1
Length = 153
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 41/74 (55%), Gaps = 3/74 (4%)
Query: 152 VAEGASREAIERLERVQIDEDRLRRQQCLCAICLQEFVVGLQVTRLPCSHIFHGDCVLNW 211
+ A++ +E L R I R + + C +CL EF +PC H+FH C+L W
Sbjct: 50 LPPPAAKTVVENLPRTVI---RGSQAELKCPVCLLEFEEEETAIEMPCHHLFHSSCILPW 106
Query: 212 LTKSKSCPLCRSEL 225
L+K+ SCPLCR EL
Sbjct: 107 LSKTNSCPLCRYEL 120
>sp|Q9FKX5|NIPL1_ARATH NEP1-interacting protein-like 1 OS=Arabidopsis thaliana GN=ATL27
PE=2 SV=1
Length = 221
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 47/76 (61%), Gaps = 3/76 (3%)
Query: 151 SVAEGASREAIERLERVQIDEDRLRRQQCLCAICLQEFVVGLQVTRLP-CSHIFHGDCVL 209
++++G + +++ R+ +V+I + + C++CLQ+F VG V LP C H+FH C+
Sbjct: 148 AISKGLTGDSLNRIPKVRITDTS--PEIVSCSVCLQDFQVGETVRSLPHCHHMFHLPCID 205
Query: 210 NWLTKSKSCPLCRSEL 225
WL + SCPLCR L
Sbjct: 206 KWLRRHASCPLCRRHL 221
>sp|Q9BV68|RN126_HUMAN RING finger protein 126 OS=Homo sapiens GN=RNF126 PE=1 SV=1
Length = 326
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 156 ASREAIERLERVQIDEDRLRRQQCLCAICLQEFVVGLQVTRLPCSHIFHGDCVLNWLTKS 215
A +E I+ L V + E+ + C +C ++ +G +V +LPC+H+FH C++ WL +
Sbjct: 205 ADKEKIQALPTVPVTEEHVG-SGLECPVCKDDYALGERVRQLPCNHLFHDGCIVPWLEQH 263
Query: 216 KSCPLCRSEL 225
SCP+CR L
Sbjct: 264 DSCPVCRKSL 273
>sp|Q0II22|RN126_BOVIN RING finger protein 126 OS=Bos taurus GN=RNF126 PE=2 SV=1
Length = 313
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Query: 156 ASREAIERLERVQIDEDRLRRQQCLCAICLQEFVVGLQVTRLPCSHIFHGDCVLNWLTKS 215
A +E I+ L V + E+ + C +C ++ +G V +LPC+H+FH C++ WL +
Sbjct: 208 ADKEKIQALPTVPVTEEHVG-SGLECPVCKDDYGLGEHVRQLPCNHLFHDGCIVPWLEQH 266
Query: 216 KSCPLCRSEL 225
SCP+CR L
Sbjct: 267 DSCPVCRKSL 276
>sp|Q9D0C1|RN115_MOUSE E3 ubiquitin-protein ligase RNF115 OS=Mus musculus GN=Rnf115 PE=1
SV=1
Length = 305
Score = 58.2 bits (139), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 63/145 (43%), Gaps = 14/145 (9%)
Query: 81 EETCQETLEGILSSVRVPSRPLFVEKILSCARAMASDKAFEGYKVLRMQVRICAVVDDDD 140
E Q+ G ++ +P P S + + S+ + Q + A+V
Sbjct: 143 EGIIQQIFAGFFANSAIPGSP----HPFSWSGMLHSNPGDYAWG----QTGLDAIVTQLL 194
Query: 141 GDIEEVSESASVAEGASREAIERLERVQIDEDRLRRQQCLCAICLQEFVVGLQVTRLPCS 200
G +E A +E I L V + ++++ C +C +++ V +V +LPC+
Sbjct: 195 GQLENTGPPP-----ADKEKITSLPTVTVTQEQVN-TGLECPVCKEDYTVEEKVRQLPCN 248
Query: 201 HIFHGDCVLNWLTKSKSCPLCRSEL 225
H FH C++ WL +CP+CR L
Sbjct: 249 HFFHSSCIVPWLELHDTCPVCRKSL 273
>sp|Q08CG8|RNF44_DANRE RING finger protein 44 OS=Danio rerio GN=rnf44 PE=2 SV=1
Length = 448
Score = 58.2 bits (139), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 52/97 (53%), Gaps = 8/97 (8%)
Query: 136 VDDDDGDIEEVSESASVAE--------GASREAIERLERVQIDEDRLRRQQCLCAICLQE 187
+D DD ++E ++AE G ++ IE+L + + + + +Q LC +C +
Sbjct: 343 LDVDDVEMENYEALLNLAERLGEAKPRGLTKADIEQLPSYRFNLENHQSEQTLCVVCFSD 402
Query: 188 FVVGLQVTRLPCSHIFHGDCVLNWLTKSKSCPLCRSE 224
F + LPC+H FH CV WL +++CP+CR++
Sbjct: 403 FESRQLLRVLPCNHEFHAKCVDKWLKTNRTCPICRAD 439
>sp|Q9Y4L5|RN115_HUMAN E3 ubiquitin-protein ligase RNF115 OS=Homo sapiens GN=RNF115 PE=1
SV=2
Length = 304
Score = 57.4 bits (137), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 62/145 (42%), Gaps = 14/145 (9%)
Query: 81 EETCQETLEGILSSVRVPSRPLFVEKILSCARAMASDKAFEGYKVLRMQVRICAVVDDDD 140
E Q G ++ +P P S + + S+ + Q + A+V
Sbjct: 142 EGILQHIFAGFFANSAIPGSP----HPFSWSGMLHSNPGDYAWG----QTGLDAIVTQLL 193
Query: 141 GDIEEVSESASVAEGASREAIERLERVQIDEDRLRRQQCLCAICLQEFVVGLQVTRLPCS 200
G +E A +E I L V + ++++ C +C +++ V +V +LPC+
Sbjct: 194 GQLENTGPPP-----ADKEKITSLPTVTVTQEQVD-MGLECPVCKEDYTVEEEVRQLPCN 247
Query: 201 HIFHGDCVLNWLTKSKSCPLCRSEL 225
H FH C++ WL +CP+CR L
Sbjct: 248 HFFHSSCIVPWLELHDTCPVCRKSL 272
>sp|Q7T037|RF12B_XENLA E3 ubiquitin-protein ligase RNF12-B OS=Xenopus laevis GN=rnf12-b
PE=2 SV=1
Length = 757
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 43/69 (62%), Gaps = 5/69 (7%)
Query: 155 GASREAIERLE-RVQIDEDRLRRQQCLCAICLQEFVVGLQVTRLPCSHIFHGDCVLNWLT 213
G ++E I+ L R + D L+ C++C+ E+ G ++ +LPCSH +H C+ WL+
Sbjct: 680 GLTKEQIDNLSTRNYGENDALK----TCSVCITEYTEGNKLRKLPCSHEYHIHCIDRWLS 735
Query: 214 KSKSCPLCR 222
++ +CP+CR
Sbjct: 736 ENSTCPICR 744
>sp|A8Y4B2|HRD1_CAEBR E3 ubiquitin-protein ligase hrd-1 OS=Caenorhabditis briggsae
GN=sel-11 PE=3 SV=2
Length = 622
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 157 SREAIERL--ERVQIDEDRLRRQQCLCAICLQEFVVGLQVTRLPCSHIFHGDCVLNWLTK 214
SR AI + + + D L C IC +E V RLPCSH+FH C+ +W +
Sbjct: 266 SRRAINAMNSQFPVVSNDELSAMDATCIICREEMTVESSPKRLPCSHVFHAHCLRSWFQR 325
Query: 215 SKSCPLCRSEL 225
++CP CR+++
Sbjct: 326 QQTCPTCRTDI 336
>sp|Q07G42|RNF12_XENTR E3 ubiquitin-protein ligase RNF12 OS=Xenopus tropicalis GN=rnf12
PE=2 SV=1
Length = 639
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 42/69 (60%), Gaps = 5/69 (7%)
Query: 155 GASREAIERLERVQIDE-DRLRRQQCLCAICLQEFVVGLQVTRLPCSHIFHGDCVLNWLT 213
G ++E I+ L E D L+ C++C+ E+ G ++ +LPCSH +H C+ WL+
Sbjct: 562 GLTKEQIDNLSTRNFGENDALK----TCSVCITEYTEGNKLRKLPCSHEYHVHCIDRWLS 617
Query: 214 KSKSCPLCR 222
++ +CP+CR
Sbjct: 618 ENSTCPICR 626
>sp|Q641J8|RF12A_XENLA E3 ubiquitin-protein ligase RNF12-A OS=Xenopus laevis GN=rnf12-a
PE=1 SV=1
Length = 622
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 42/69 (60%), Gaps = 5/69 (7%)
Query: 155 GASREAIERLERVQIDE-DRLRRQQCLCAICLQEFVVGLQVTRLPCSHIFHGDCVLNWLT 213
G ++E I+ L E D L+ C++C+ E+ G ++ +LPCSH +H C+ WL+
Sbjct: 545 GLTKEQIDNLSTRNFGENDALK----TCSVCITEYTEGNKLRKLPCSHEYHIHCIDRWLS 600
Query: 214 KSKSCPLCR 222
++ +CP+CR
Sbjct: 601 ENSTCPICR 609
>sp|Q9WTV7|RNF12_MOUSE E3 ubiquitin-protein ligase RLIM OS=Mus musculus GN=Rlim PE=1 SV=2
Length = 600
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 31/42 (73%)
Query: 181 CAICLQEFVVGLQVTRLPCSHIFHGDCVLNWLTKSKSCPLCR 222
C++C+ E+ G ++ +LPCSH +H C+ WL+++ +CP+CR
Sbjct: 546 CSVCITEYTEGNKLRKLPCSHEYHVHCIDRWLSENSTCPICR 587
>sp|Q8L649|BB_ARATH E3 ubiquitin ligase BIG BROTHER OS=Arabidopsis thaliana GN=BB PE=1
SV=1
Length = 248
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 50/97 (51%), Gaps = 7/97 (7%)
Query: 136 VDDDDGDIEEVSE----SASVAEGASREAIERLERVQIDEDRL---RRQQCLCAICLQEF 188
+D D EE+ E + + G S+E IE L + + +R C IC ++
Sbjct: 145 IDPDTMTYEELVELGEAVGTESRGLSQELIETLPTKKYKFGSIFSRKRAGERCVICQLKY 204
Query: 189 VVGLQVTRLPCSHIFHGDCVLNWLTKSKSCPLCRSEL 225
+G + LPC H++H +C+ WL+ +K CP+C SE+
Sbjct: 205 KIGERQMNLPCKHVYHSECISKWLSINKVCPVCNSEV 241
>sp|Q6NRL6|SYVNA_XENLA E3 ubiquitin-protein ligase synoviolin A OS=Xenopus laevis
GN=syvn1-a PE=2 SV=1
Length = 605
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 4/68 (5%)
Query: 157 SREAIERLERVQIDE--DRLRRQQCLCAICLQEFVVGLQVTRLPCSHIFHGDCVLNWLTK 214
SR AI + + D + L+ +C IC +E V G + RLPC+HIFH C+ +W +
Sbjct: 259 SRRAIRNMNTLYPDATAEELQAMDNVCIICREEMVTGAK--RLPCNHIFHTSCLRSWFQR 316
Query: 215 SKSCPLCR 222
++CP CR
Sbjct: 317 QQTCPTCR 324
>sp|Q86TM6|SYVN1_HUMAN E3 ubiquitin-protein ligase synoviolin OS=Homo sapiens GN=SYVN1
PE=1 SV=2
Length = 617
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 4/68 (5%)
Query: 157 SREAIERLERVQID--EDRLRRQQCLCAICLQEFVVGLQVTRLPCSHIFHGDCVLNWLTK 214
SR AI + + D + L+ +C IC +E V G + RLPC+HIFH C+ +W +
Sbjct: 265 SRRAIRNMNTLYPDATPEELQAMDNVCIICREEMVTGAK--RLPCNHIFHTSCLRSWFQR 322
Query: 215 SKSCPLCR 222
++CP CR
Sbjct: 323 QQTCPTCR 330
>sp|Q8GT75|NIP1_ARATH NEP1-interacting protein 1 OS=Arabidopsis thaliana GN=NIP1 PE=1
SV=2
Length = 236
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 54/92 (58%), Gaps = 6/92 (6%)
Query: 140 DGDIEEVSE--SASVAEGASREAIERLERVQI-DEDRL--RRQQCLCAICLQEFVVGLQV 194
D EE+S ++G + + ++++ +++I ++ L + C++CLQ+F +G V
Sbjct: 145 DSTFEELSSIFDTGGSKGLTGDLVDKIPKIKITGKNNLDASGNKDSCSVCLQDFQLGETV 204
Query: 195 TRLP-CSHIFHGDCVLNWLTKSKSCPLCRSEL 225
LP C H+FH C+ NWL + SCP+CR +L
Sbjct: 205 RSLPHCHHMFHLPCIDNWLFRHGSCPMCRRDL 236
>sp|Q9NVW2|RNF12_HUMAN E3 ubiquitin-protein ligase RLIM OS=Homo sapiens GN=RLIM PE=1 SV=3
Length = 624
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 31/42 (73%)
Query: 181 CAICLQEFVVGLQVTRLPCSHIFHGDCVLNWLTKSKSCPLCR 222
C++C+ E+ G ++ +LPCSH +H C+ WL+++ +CP+CR
Sbjct: 570 CSVCITEYTEGNKLRKLPCSHEYHVHCIDRWLSENSTCPICR 611
>sp|Q8LBA0|NIPL2_ARATH NEP1-interacting protein-like 2 OS=Arabidopsis thaliana GN=ATL24
PE=1 SV=2
Length = 223
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 42/72 (58%), Gaps = 3/72 (4%)
Query: 153 AEGASREAIERLERVQIDEDRLRRQQCLCAICLQEFVVGLQVTR-LP-CSHIFHGDCVLN 210
A G S +++ +L + + +RRQ C ICLQ+ G ++TR LP C H FH CV
Sbjct: 148 ARGLSGDSLRKLPCYIMSSEMVRRQVTHCTICLQDIKTG-EITRSLPKCDHTFHLVCVDK 206
Query: 211 WLTKSKSCPLCR 222
WL + SCP+CR
Sbjct: 207 WLIRHGSCPICR 218
>sp|Q8GT74|NIP2_ARATH NEP1-interacting protein 2 OS=Arabidopsis thaliana GN=NIP2 PE=1
SV=1
Length = 241
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 45/77 (58%), Gaps = 4/77 (5%)
Query: 153 AEGASREAIERLERVQIDEDR---LRRQQCLCAICLQEFVVGLQVTRLP-CSHIFHGDCV 208
++G + + +E++ ++ I + C++CLQ+F +G V LP C H+FH C+
Sbjct: 165 SKGLTGDLVEKIPKMTITGNNNTDASENTDSCSVCLQDFQLGETVRSLPHCHHMFHLPCI 224
Query: 209 LNWLTKSKSCPLCRSEL 225
NWL + SCP+CR ++
Sbjct: 225 DNWLLRHGSCPMCRRDI 241
>sp|Q5XHH7|SYVNB_XENLA E3 ubiquitin-protein ligase synoviolin B OS=Xenopus laevis
GN=syvn1-b PE=2 SV=1
Length = 595
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 4/68 (5%)
Query: 157 SREAIERLERVQIDE--DRLRRQQCLCAICLQEFVVGLQVTRLPCSHIFHGDCVLNWLTK 214
SR AI + + D + L+ +C IC +E V G + RLPC+HIFH C+ +W +
Sbjct: 259 SRRAIRNMNTLYPDATAEELQAMDNVCIICREEMVSGAK--RLPCNHIFHTSCLRSWFQR 316
Query: 215 SKSCPLCR 222
++CP CR
Sbjct: 317 QQTCPTCR 324
>sp|Q6ZNA4|RN111_HUMAN E3 ubiquitin-protein ligase Arkadia OS=Homo sapiens GN=RNF111 PE=1
SV=3
Length = 994
Score = 55.8 bits (133), Expect = 2e-07, Method: Composition-based stats.
Identities = 36/109 (33%), Positives = 48/109 (44%), Gaps = 24/109 (22%)
Query: 141 GDIEEV----SESASVAEGASREAIER------LERVQIDEDRLRRQQCL---------- 180
G+ EE+ +V GAS+ IER ++V D R+ C
Sbjct: 878 GNFEELIHLEERLGNVNRGASQGTIERCTYPHKYKKVTTDWFSQRKLHCKQDGEEGTEED 937
Query: 181 ----CAICLQEFVVGLQVTRLPCSHIFHGDCVLNWLTKSKSCPLCRSEL 225
C ICL G V RLPC H+FH CV WL +K CP+CR ++
Sbjct: 938 TEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDI 986
>sp|Q66HG0|RNF13_RAT E3 ubiquitin-protein ligase RNF13 OS=Rattus norvegicus GN=Rnf13
PE=2 SV=1
Length = 380
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 45/65 (69%), Gaps = 1/65 (1%)
Query: 162 ERLERVQIDEDRLRRQQCLCAICLQEFVVGLQVTRLPCSHIFHGDCVLNWLTKS-KSCPL 220
++L+++ + + + + +CAICL+E+ G ++ LPCSH +H CV WLTK+ K+CP+
Sbjct: 221 DQLKKLPVHKFKKGDEYDVCAICLEEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPV 280
Query: 221 CRSEL 225
C+ ++
Sbjct: 281 CKQKV 285
>sp|O54965|RNF13_MOUSE E3 ubiquitin-protein ligase RNF13 OS=Mus musculus GN=Rnf13 PE=1
SV=2
Length = 381
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 45/65 (69%), Gaps = 1/65 (1%)
Query: 162 ERLERVQIDEDRLRRQQCLCAICLQEFVVGLQVTRLPCSHIFHGDCVLNWLTKS-KSCPL 220
++L+++ + + + + +CAICL+E+ G ++ LPCSH +H CV WLTK+ K+CP+
Sbjct: 221 DQLKKLPVHKFKKGDEYDVCAICLEEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPV 280
Query: 221 CRSEL 225
C+ ++
Sbjct: 281 CKQKV 285
>sp|Q9DBY1|SYVN1_MOUSE E3 ubiquitin-protein ligase synoviolin OS=Mus musculus GN=Syvn1
PE=1 SV=3
Length = 612
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 4/68 (5%)
Query: 157 SREAIERLERVQID--EDRLRRQQCLCAICLQEFVVGLQVTRLPCSHIFHGDCVLNWLTK 214
SR AI + + D + L+ +C IC +E V G + RLPC+HIFH C+ +W +
Sbjct: 265 SRRAIRNMNTLYPDATPEELQAVDNVCIICREEMVTGAK--RLPCNHIFHTSCLRSWFQR 322
Query: 215 SKSCPLCR 222
++CP CR
Sbjct: 323 QQTCPTCR 330
>sp|Q0V9R0|RN111_XENTR E3 ubiquitin-protein ligase arkadia OS=Xenopus tropicalis GN=rnf111
PE=2 SV=1
Length = 954
Score = 55.5 bits (132), Expect = 3e-07, Method: Composition-based stats.
Identities = 37/109 (33%), Positives = 50/109 (45%), Gaps = 24/109 (22%)
Query: 141 GDIEEV----SESASVAEGASREAIER------LERVQID---EDRLRRQQ--------- 178
G+ EE+ +V GAS+ IER E+V D + +L +Q
Sbjct: 838 GNFEELIHLEERLGNVNRGASQGTIERCTYPHKYEKVSTDWFSQRKLHSKQDGEEATEED 897
Query: 179 --CLCAICLQEFVVGLQVTRLPCSHIFHGDCVLNWLTKSKSCPLCRSEL 225
C ICL G V RLPC H+FH CV WL +K CP+CR ++
Sbjct: 898 TEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDI 946
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.134 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,766,991
Number of Sequences: 539616
Number of extensions: 3117775
Number of successful extensions: 14197
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 363
Number of HSP's successfully gapped in prelim test: 236
Number of HSP's that attempted gapping in prelim test: 13719
Number of HSP's gapped (non-prelim): 654
length of query: 225
length of database: 191,569,459
effective HSP length: 113
effective length of query: 112
effective length of database: 130,592,851
effective search space: 14626399312
effective search space used: 14626399312
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)