Query 041990
Match_columns 225
No_of_seqs 180 out of 1541
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 22:18:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041990.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041990hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 99.7 2.5E-18 8.5E-23 126.9 6.1 76 150-225 11-87 (91)
2 1x4j_A Ring finger protein 38; 99.7 3.2E-18 1.1E-22 121.5 1.5 66 160-225 5-70 (75)
3 1iym_A EL5; ring-H2 finger, ub 99.6 6.1E-16 2.1E-20 102.9 4.2 48 178-225 5-53 (55)
4 2kiz_A E3 ubiquitin-protein li 99.6 1.6E-15 5.4E-20 105.6 4.7 49 177-225 13-61 (69)
5 2ep4_A Ring finger protein 24; 99.5 2.7E-15 9.3E-20 105.7 4.4 47 179-225 16-62 (74)
6 2ect_A Ring finger protein 126 99.5 4.2E-15 1.4E-19 105.8 4.2 48 178-225 15-62 (78)
7 2ecm_A Ring finger and CHY zin 99.5 1.2E-14 4E-19 96.5 4.4 47 179-225 6-53 (55)
8 2ecl_A Ring-box protein 2; RNF 99.5 7.3E-15 2.5E-19 106.1 3.2 46 180-225 17-74 (81)
9 3dpl_R Ring-box protein 1; ubi 99.5 3E-14 1E-18 108.4 5.2 48 177-224 36-98 (106)
10 1v87_A Deltex protein 2; ring- 99.5 3.5E-14 1.2E-18 108.0 5.3 46 180-225 27-92 (114)
11 3ng2_A RNF4, snurf, ring finge 99.4 3.4E-14 1.1E-18 99.0 3.6 48 178-225 10-61 (71)
12 2ea6_A Ring finger protein 4; 99.4 4.4E-14 1.5E-18 97.6 3.9 48 178-225 15-66 (69)
13 2xeu_A Ring finger protein 4; 99.4 4.3E-14 1.5E-18 96.2 3.7 47 179-225 4-54 (64)
14 1chc_A Equine herpes virus-1 r 99.4 1.4E-13 4.6E-18 95.3 3.5 45 179-225 6-50 (68)
15 2d8t_A Dactylidin, ring finger 99.4 2.1E-13 7.2E-18 95.5 3.5 44 179-225 16-59 (71)
16 2ecn_A Ring finger protein 141 99.4 1.2E-13 4.1E-18 96.2 1.4 44 178-225 15-58 (70)
17 4a0k_B E3 ubiquitin-protein li 99.4 5.3E-14 1.8E-18 108.9 -0.7 47 178-224 48-109 (117)
18 4ayc_A E3 ubiquitin-protein li 99.3 4.3E-13 1.5E-17 105.7 4.1 44 179-225 54-97 (138)
19 2d8s_A Cellular modulator of i 99.3 4.1E-13 1.4E-17 97.2 3.3 47 178-225 15-68 (80)
20 2djb_A Polycomb group ring fin 99.3 9E-13 3.1E-17 92.5 4.6 45 179-225 16-60 (72)
21 2ct2_A Tripartite motif protei 99.3 9.1E-13 3.1E-17 95.2 4.2 48 178-225 15-66 (88)
22 2csy_A Zinc finger protein 183 99.3 9.7E-13 3.3E-17 94.3 4.2 45 178-225 15-59 (81)
23 2ysl_A Tripartite motif-contai 99.3 2.3E-12 7.7E-17 90.2 4.5 45 178-225 20-67 (73)
24 2ecy_A TNF receptor-associated 99.3 1.5E-12 5.2E-17 89.7 3.5 45 178-225 15-60 (66)
25 2yur_A Retinoblastoma-binding 99.3 2.2E-12 7.5E-17 91.1 3.9 43 179-224 16-61 (74)
26 4ap4_A E3 ubiquitin ligase RNF 99.3 2.4E-12 8.1E-17 99.2 4.1 48 178-225 7-58 (133)
27 3lrq_A E3 ubiquitin-protein li 99.3 2E-12 7E-17 96.6 3.5 44 179-225 23-68 (100)
28 1t1h_A Gspef-atpub14, armadill 99.3 2.6E-12 8.8E-17 91.2 3.7 45 178-225 8-53 (78)
29 2y43_A E3 ubiquitin-protein li 99.2 4.2E-12 1.4E-16 94.2 4.2 44 179-225 23-67 (99)
30 2ckl_A Polycomb group ring fin 99.2 6.1E-12 2.1E-16 94.9 4.2 45 178-225 15-60 (108)
31 2ecw_A Tripartite motif-contai 99.2 7.1E-12 2.4E-16 89.5 4.3 44 179-225 20-69 (85)
32 3fl2_A E3 ubiquitin-protein li 99.2 7.3E-12 2.5E-16 96.7 4.1 44 179-225 53-97 (124)
33 2egp_A Tripartite motif-contai 99.2 2.6E-12 9E-17 91.0 1.2 45 178-225 12-63 (79)
34 2ct0_A Non-SMC element 1 homol 99.2 1.1E-11 3.9E-16 88.4 4.3 46 177-224 14-61 (74)
35 4ap4_A E3 ubiquitin ligase RNF 99.2 1E-11 3.5E-16 95.6 4.0 50 176-225 70-123 (133)
36 2ysj_A Tripartite motif-contai 99.2 1.7E-11 5.8E-16 83.5 4.7 41 178-221 20-63 (63)
37 1g25_A CDK-activating kinase a 99.2 1.6E-11 5.6E-16 84.2 4.4 47 179-225 4-53 (65)
38 2ecv_A Tripartite motif-contai 99.2 9.8E-12 3.4E-16 88.7 3.3 44 179-225 20-69 (85)
39 3ztg_A E3 ubiquitin-protein li 99.2 1.7E-11 6E-16 89.5 4.2 45 178-225 13-60 (92)
40 2ckl_B Ubiquitin ligase protei 99.2 1.9E-11 6.6E-16 98.7 4.5 45 179-225 55-100 (165)
41 1jm7_A BRCA1, breast cancer ty 99.2 1.4E-11 4.7E-16 92.9 3.3 44 179-225 22-68 (112)
42 2ecj_A Tripartite motif-contai 99.1 2.5E-11 8.5E-16 81.0 3.3 40 179-221 16-58 (58)
43 3hct_A TNF receptor-associated 99.1 2.8E-11 9.7E-16 92.7 3.9 46 177-225 17-63 (118)
44 3l11_A E3 ubiquitin-protein li 99.1 1.4E-11 4.8E-16 93.8 2.0 44 179-225 16-60 (115)
45 1z6u_A NP95-like ring finger p 99.1 3.1E-11 1.1E-15 96.8 4.1 44 179-225 79-123 (150)
46 1rmd_A RAG1; V(D)J recombinati 99.1 4.6E-11 1.6E-15 91.0 3.7 44 179-225 24-68 (116)
47 2kr4_A Ubiquitin conjugation f 99.1 7.8E-11 2.7E-15 85.7 3.7 44 179-225 15-58 (85)
48 2kre_A Ubiquitin conjugation f 99.0 1.1E-10 3.8E-15 87.6 3.7 45 178-225 29-73 (100)
49 2vje_A E3 ubiquitin-protein li 99.0 1.7E-10 5.9E-15 79.5 3.9 44 179-225 9-55 (64)
50 1wgm_A Ubiquitin conjugation f 99.0 2E-10 6.7E-15 85.9 4.0 44 179-225 23-67 (98)
51 2vje_B MDM4 protein; proto-onc 99.0 2.5E-10 8.4E-15 78.5 3.8 45 178-225 7-54 (63)
52 1e4u_A Transcriptional repress 99.0 2.2E-10 7.6E-15 82.3 3.2 49 177-225 10-60 (78)
53 3knv_A TNF receptor-associated 99.0 1.1E-10 3.9E-15 92.6 1.7 46 176-224 29-75 (141)
54 2y1n_A E3 ubiquitin-protein li 99.0 2.9E-10 9.9E-15 104.0 4.4 44 179-225 333-377 (389)
55 1jm7_B BARD1, BRCA1-associated 98.9 1.7E-10 5.8E-15 88.3 1.2 42 179-225 23-65 (117)
56 4ic3_A E3 ubiquitin-protein li 98.9 4.9E-10 1.7E-14 79.2 2.3 40 179-225 25-65 (74)
57 1bor_A Transcription factor PM 98.9 3.2E-10 1.1E-14 75.9 0.7 41 179-225 7-47 (56)
58 2c2l_A CHIP, carboxy terminus 98.9 9.9E-10 3.4E-14 94.3 3.5 45 178-225 208-253 (281)
59 3hcs_A TNF receptor-associated 98.8 1.6E-09 5.4E-14 87.7 3.7 46 177-225 17-63 (170)
60 3k1l_B Fancl; UBC, ring, RWD, 98.8 5.2E-10 1.8E-14 100.6 0.2 50 176-225 306-371 (381)
61 2yu4_A E3 SUMO-protein ligase 98.8 1.9E-09 6.4E-14 79.6 2.6 44 178-224 7-59 (94)
62 2ecg_A Baculoviral IAP repeat- 98.7 4.7E-09 1.6E-13 74.1 2.5 39 180-225 27-66 (75)
63 2f42_A STIP1 homology and U-bo 98.7 7.9E-09 2.7E-13 85.3 4.0 46 177-225 105-151 (179)
64 1vyx_A ORF K3, K3RING; zinc-bi 98.7 7.1E-09 2.4E-13 70.8 2.9 45 178-225 6-57 (60)
65 2yho_A E3 ubiquitin-protein li 98.6 1.3E-08 4.4E-13 73.0 1.7 39 180-225 20-59 (79)
66 1wim_A KIAA0161 protein; ring 98.6 2.5E-08 8.5E-13 73.2 3.3 46 179-224 6-61 (94)
67 2bay_A PRE-mRNA splicing facto 98.6 2.4E-08 8.3E-13 68.2 2.5 43 180-225 5-48 (61)
68 2ea5_A Cell growth regulator w 98.5 3.5E-08 1.2E-12 68.7 3.1 41 178-225 15-56 (68)
69 3htk_C E3 SUMO-protein ligase 98.4 7.6E-08 2.6E-12 83.6 2.7 44 179-224 182-229 (267)
70 3t6p_A Baculoviral IAP repeat- 98.4 5.4E-08 1.8E-12 87.8 1.5 41 178-225 295-336 (345)
71 3vk6_A E3 ubiquitin-protein li 98.3 4.3E-07 1.5E-11 67.8 4.6 43 181-225 4-47 (101)
72 3nw0_A Non-structural maintena 97.9 4.5E-06 1.5E-10 71.6 3.0 46 177-224 179-226 (238)
73 2jun_A Midline-1; B-BOX, TRIM, 94.5 0.018 6.3E-07 41.8 2.5 34 179-212 4-38 (101)
74 2lri_C Autoimmune regulator; Z 92.5 0.09 3.1E-06 35.9 3.0 43 179-224 13-59 (66)
75 1we9_A PHD finger family prote 90.8 0.046 1.6E-06 36.7 0.0 49 176-224 4-58 (64)
76 2ko5_A Ring finger protein Z; 90.4 0.12 4.2E-06 37.9 2.0 42 179-225 29-71 (99)
77 1wil_A KIAA1045 protein; ring 90.2 0.16 5.6E-06 36.5 2.5 31 180-211 17-47 (89)
78 2kgg_A Histone demethylase jar 86.2 0.31 1.1E-05 31.4 1.7 45 178-222 2-52 (52)
79 2k16_A Transcription initiatio 84.2 0.42 1.4E-05 32.9 1.7 46 177-223 17-67 (75)
80 3m62_A Ubiquitin conjugation f 83.9 0.78 2.7E-05 46.2 4.1 43 180-225 893-936 (968)
81 2l5u_A Chromodomain-helicase-D 83.9 0.61 2.1E-05 31.0 2.4 42 179-223 12-57 (61)
82 1f62_A Transcription factor WS 83.3 0.7 2.4E-05 29.3 2.4 45 180-224 2-50 (51)
83 2yql_A PHD finger protein 21A; 76.9 0.26 8.8E-06 32.2 -1.4 44 177-223 8-55 (56)
84 2vpb_A Hpygo1, pygopus homolog 75.0 2.3 8E-05 28.6 3.0 34 176-209 6-41 (65)
85 2lv9_A Histone-lysine N-methyl 75.0 1 3.5E-05 32.8 1.3 43 180-223 30-75 (98)
86 1mm2_A MI2-beta; PHD, zinc fin 74.8 0.59 2E-05 31.1 -0.1 43 179-224 10-56 (61)
87 1z60_A TFIIH basal transcripti 74.8 1.4 4.8E-05 29.4 1.8 42 180-221 17-58 (59)
88 1wep_A PHF8; structural genomi 74.1 1.6 5.4E-05 30.3 2.1 44 180-224 14-63 (79)
89 3asl_A E3 ubiquitin-protein li 71.7 1.3 4.5E-05 30.2 1.1 46 179-224 19-69 (70)
90 2lbm_A Transcriptional regulat 71.6 5.5 0.00019 31.0 4.8 42 178-223 63-116 (142)
91 1wem_A Death associated transc 71.4 0.91 3.1E-05 31.3 0.2 43 180-223 18-69 (76)
92 3shb_A E3 ubiquitin-protein li 71.3 1 3.4E-05 31.6 0.4 46 178-223 26-76 (77)
93 3v43_A Histone acetyltransfera 69.5 5.3 0.00018 29.4 4.2 30 180-209 7-42 (112)
94 2ysm_A Myeloid/lymphoid or mix 68.3 1.6 5.6E-05 32.0 1.1 44 179-222 8-55 (111)
95 1wew_A DNA-binding family prot 67.6 1.2 4.1E-05 31.0 0.2 44 179-223 17-71 (78)
96 2e6s_A E3 ubiquitin-protein li 67.0 1.7 5.7E-05 30.4 0.8 45 179-223 27-76 (77)
97 1weu_A Inhibitor of growth fam 65.6 2.6 8.9E-05 30.4 1.7 44 177-224 35-85 (91)
98 2xb1_A Pygopus homolog 2, B-ce 64.3 3.7 0.00013 30.2 2.3 45 179-223 4-60 (105)
99 1fp0_A KAP-1 corepressor; PHD 64.2 2.6 8.9E-05 30.3 1.4 42 179-223 26-71 (88)
100 3v43_A Histone acetyltransfera 64.2 2.5 8.6E-05 31.2 1.4 45 180-224 63-112 (112)
101 1wen_A Inhibitor of growth fam 63.1 4.1 0.00014 27.8 2.2 42 179-224 17-65 (71)
102 3ask_A E3 ubiquitin-protein li 61.4 2 6.9E-05 36.1 0.5 47 178-224 174-225 (226)
103 2yt5_A Metal-response element- 60.4 4.1 0.00014 26.9 1.8 47 177-223 5-60 (66)
104 3o70_A PHD finger protein 13; 58.9 1.6 5.4E-05 29.7 -0.5 43 180-223 21-66 (68)
105 2puy_A PHD finger protein 21A; 58.8 1.2 4.1E-05 29.3 -1.1 41 180-223 7-51 (60)
106 1xwh_A Autoimmune regulator; P 58.2 0.89 3E-05 30.6 -1.9 42 179-223 9-54 (66)
107 3ql9_A Transcriptional regulat 58.0 15 0.00051 28.1 4.9 41 179-223 58-110 (129)
108 4fo9_A E3 SUMO-protein ligase 53.0 13 0.00045 33.3 4.3 44 180-225 217-264 (360)
109 3i2d_A E3 SUMO-protein ligase 52.3 13 0.00045 33.4 4.2 43 180-224 251-297 (371)
110 3c6w_A P28ING5, inhibitor of g 50.5 3.1 0.00011 27.4 -0.2 41 180-224 11-58 (59)
111 1wee_A PHD finger family prote 49.3 2 6.7E-05 29.3 -1.3 44 179-223 17-65 (72)
112 2vnf_A ING 4, P29ING4, inhibit 48.6 3.4 0.00011 27.2 -0.2 40 180-223 12-58 (60)
113 1iml_A CRIP, cysteine rich int 48.5 6.6 0.00022 26.2 1.3 39 180-222 29-68 (76)
114 2e6r_A Jumonji/ARID domain-con 48.5 1.5 5.2E-05 31.5 -2.1 45 179-223 17-65 (92)
115 2rsd_A E3 SUMO-protein ligase 47.1 1.4 4.9E-05 29.7 -2.3 43 180-223 12-64 (68)
116 2gmg_A Hypothetical protein PF 46.9 3.7 0.00013 30.5 -0.2 23 197-224 71-93 (105)
117 3o7a_A PHD finger protein 13 v 46.1 2.7 9.4E-05 26.7 -0.9 41 183-223 8-51 (52)
118 2g6q_A Inhibitor of growth pro 43.8 4.7 0.00016 26.8 -0.1 41 180-224 13-60 (62)
119 3fyb_A Protein of unknown func 43.7 8.7 0.0003 28.2 1.3 11 203-213 42-52 (104)
120 2o35_A Hypothetical protein DU 43.6 8.7 0.0003 28.2 1.3 11 203-213 43-53 (105)
121 1weo_A Cellulose synthase, cat 42.2 26 0.00088 25.2 3.6 45 180-224 18-67 (93)
122 2cu8_A Cysteine-rich protein 2 41.5 11 0.00036 25.1 1.5 26 180-207 11-36 (76)
123 1zbd_B Rabphilin-3A; G protein 39.1 13 0.00043 28.6 1.7 33 177-209 54-88 (134)
124 2d8v_A Zinc finger FYVE domain 38.8 13 0.00044 25.3 1.5 29 179-211 9-38 (67)
125 1joc_A EEA1, early endosomal a 38.6 17 0.00058 27.3 2.3 33 179-211 70-103 (125)
126 2jvx_A NF-kappa-B essential mo 38.5 5.1 0.00018 22.6 -0.5 9 216-224 4-12 (28)
127 2cs3_A Protein C14ORF4, MY039 38.4 30 0.001 24.5 3.4 35 179-214 16-52 (93)
128 1wfk_A Zinc finger, FYVE domai 37.4 20 0.00067 25.3 2.4 36 176-211 7-43 (88)
129 2ysm_A Myeloid/lymphoid or mix 37.1 5.1 0.00018 29.3 -0.8 44 180-223 56-103 (111)
130 3a1b_A DNA (cytosine-5)-methyl 36.3 31 0.0011 27.3 3.6 33 178-214 79-114 (159)
131 2dj7_A Actin-binding LIM prote 36.1 14 0.00048 25.1 1.4 27 180-208 17-43 (80)
132 3t7l_A Zinc finger FYVE domain 35.9 25 0.00086 24.7 2.8 34 179-212 21-55 (90)
133 4gne_A Histone-lysine N-methyl 35.6 17 0.00059 26.8 1.9 38 179-222 16-60 (107)
134 1y02_A CARP2, FYVE-ring finger 34.5 4.1 0.00014 30.8 -1.7 42 180-221 21-63 (120)
135 2kwj_A Zinc finger protein DPF 34.5 4.7 0.00016 29.8 -1.4 44 180-223 60-107 (114)
136 3kqi_A GRC5, PHD finger protei 33.7 9.1 0.00031 26.0 0.1 42 182-223 13-60 (75)
137 2yw8_A RUN and FYVE domain-con 33.5 25 0.00086 24.2 2.4 33 179-211 20-53 (82)
138 2l43_A N-teminal domain from h 33.0 36 0.0012 23.9 3.2 46 178-223 25-74 (88)
139 3mjh_B Early endosome antigen 32.1 12 0.00041 22.0 0.4 13 179-191 6-18 (34)
140 1vfy_A Phosphatidylinositol-3- 31.5 29 0.00098 23.3 2.4 32 180-211 13-45 (73)
141 1z2q_A LM5-1; membrane protein 31.2 29 0.00098 24.0 2.4 33 179-211 22-55 (84)
142 1x63_A Skeletal muscle LIM-pro 31.1 31 0.0011 23.0 2.5 27 180-207 17-43 (82)
143 1wev_A Riken cDNA 1110020M19; 30.5 19 0.00064 25.3 1.3 45 179-223 17-71 (88)
144 2ku3_A Bromodomain-containing 30.0 40 0.0014 22.7 2.9 45 179-223 17-65 (71)
145 1dvp_A HRS, hepatocyte growth 29.0 22 0.00076 29.0 1.7 33 179-211 162-195 (220)
146 2ct7_A Ring finger protein 31; 28.6 2.6 8.8E-05 29.7 -3.6 17 195-211 44-61 (86)
147 2zet_C Melanophilin; complex, 28.0 29 0.001 27.1 2.2 31 178-208 68-100 (153)
148 1x4u_A Zinc finger, FYVE domai 27.3 33 0.0011 23.7 2.2 33 179-211 15-48 (84)
149 3pwf_A Rubrerythrin; non heme 27.3 29 0.001 27.4 2.1 25 193-224 138-162 (170)
150 3zyq_A Hepatocyte growth facto 27.1 27 0.00092 28.7 1.9 33 179-211 165-198 (226)
151 1x4k_A Skeletal muscle LIM-pro 26.8 37 0.0013 21.9 2.3 9 181-189 8-16 (72)
152 1x4l_A Skeletal muscle LIM-pro 26.0 31 0.0011 22.4 1.7 10 180-189 7-16 (72)
153 3f6q_B LIM and senescent cell 25.7 33 0.0011 21.9 1.8 28 180-208 13-40 (72)
154 3kv5_D JMJC domain-containing 25.2 12 0.00041 34.8 -0.7 41 183-223 41-87 (488)
155 1x68_A FHL5 protein; four-and- 24.6 33 0.0011 22.6 1.7 9 181-189 8-16 (76)
156 2kdx_A HYPA, hydrogenase/ureas 24.5 37 0.0013 24.9 2.1 26 193-224 73-99 (119)
157 3mpx_A FYVE, rhogef and PH dom 24.5 16 0.00054 32.5 0.0 45 179-223 376-428 (434)
158 1wyh_A SLIM 2, skeletal muscle 24.3 31 0.0011 22.3 1.5 9 180-188 35-43 (72)
159 2jmi_A Protein YNG1, ING1 homo 23.8 15 0.00051 26.3 -0.3 41 179-223 27-75 (90)
160 2co8_A NEDD9 interacting prote 23.7 22 0.00074 24.1 0.6 27 180-208 17-43 (82)
161 2a20_A Regulating synaptic mem 23.3 4.1 0.00014 27.2 -3.0 46 178-223 9-59 (62)
162 2jmo_A Parkin; IBR, E3 ligase, 22.7 8.9 0.00031 26.5 -1.6 20 198-219 55-74 (80)
163 2pv0_B DNA (cytosine-5)-methyl 22.6 55 0.0019 29.5 3.2 42 177-222 92-146 (386)
164 1m3v_A FLIN4, fusion of the LI 22.4 81 0.0028 22.8 3.7 46 180-225 34-79 (122)
165 1zfo_A LAsp-1; LIM domain, zin 22.1 26 0.00088 19.6 0.6 26 180-207 5-30 (31)
166 2lcq_A Putative toxin VAPC6; P 21.6 24 0.00084 27.2 0.6 23 196-224 135-157 (165)
167 1lko_A Rubrerythrin all-iron(I 21.5 30 0.001 27.7 1.1 24 195-224 157-180 (191)
168 2d8z_A Four and A half LIM dom 21.3 53 0.0018 21.0 2.2 11 200-210 51-61 (70)
169 2dar_A PDZ and LIM domain prot 20.5 37 0.0013 23.2 1.3 25 180-207 27-51 (90)
170 1g47_A Pinch protein; LIM doma 20.4 45 0.0015 21.8 1.7 27 180-207 13-39 (77)
171 2d8x_A Protein pinch; LIM doma 20.4 41 0.0014 21.6 1.5 31 180-212 33-63 (70)
172 1x62_A C-terminal LIM domain p 20.2 43 0.0015 22.2 1.6 26 180-208 17-42 (79)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.73 E-value=2.5e-18 Score=126.94 Aligned_cols=76 Identities=41% Similarity=0.791 Sum_probs=66.0
Q ss_pred ccCCCCCCHHHHHhcccccccccc-cccccccccccccccccCceeEEeCcCCeecHHHHHHHhhcCCCCCCcCCCC
Q 041990 150 ASVAEGASREAIERLERVQIDEDR-LRRQQCLCAICLQEFVVGLQVTRLPCSHIFHGDCVLNWLTKSKSCPLCRSEL 225 (225)
Q Consensus 150 ~~~~~~as~~~i~~L~~~~~~~~~-~~~~~c~C~ICLee~~~g~~~~~lpC~H~FH~~CI~~WL~~~~sCPlCR~~l 225 (225)
.....+++++.+++|+.+.+.... .......|+||++.|..+..+..+||+|.||..||.+|++.+.+||+||+++
T Consensus 11 ~~~~~~~s~~~i~~lp~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~ 87 (91)
T 2l0b_A 11 MVANPPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMF 87 (91)
T ss_dssp SSCCCCCCHHHHHTSCEEECCTTCSSSSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBS
T ss_pred CcCCCCCCHHHHHhCCCeeecccccccCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccC
Confidence 567789999999999988886543 2344557899999999988889999999999999999999999999999864
No 2
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=3.2e-18 Score=121.52 Aligned_cols=66 Identities=30% Similarity=0.812 Sum_probs=55.5
Q ss_pred HHHhcccccccccccccccccccccccccccCceeEEeCcCCeecHHHHHHHhhcCCCCCCcCCCC
Q 041990 160 AIERLERVQIDEDRLRRQQCLCAICLQEFVVGLQVTRLPCSHIFHGDCVLNWLTKSKSCPLCRSEL 225 (225)
Q Consensus 160 ~i~~L~~~~~~~~~~~~~~c~C~ICLee~~~g~~~~~lpC~H~FH~~CI~~WL~~~~sCPlCR~~l 225 (225)
.+++|+..++.......+...|+||++.|..+..+..+||+|+||..||.+|++.+.+||+||+++
T Consensus 5 ~i~~lp~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~ 70 (75)
T 1x4j_A 5 SSGQLPSYRFNPNNHQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADS 70 (75)
T ss_dssp CCSSCCCEEBCSSSCSSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCC
T ss_pred hHhhCCcEEecCccccCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcC
Confidence 345677777765544455567899999999998889999999999999999999999999999875
No 3
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.59 E-value=6.1e-16 Score=102.94 Aligned_cols=48 Identities=44% Similarity=0.964 Sum_probs=43.9
Q ss_pred cccccccccccccCceeEEeC-cCCeecHHHHHHHhhcCCCCCCcCCCC
Q 041990 178 QCLCAICLQEFVVGLQVTRLP-CSHIFHGDCVLNWLTKSKSCPLCRSEL 225 (225)
Q Consensus 178 ~c~C~ICLee~~~g~~~~~lp-C~H~FH~~CI~~WL~~~~sCPlCR~~l 225 (225)
...|+||++.+..++....+| |+|.||..||.+|++++.+||+||+++
T Consensus 5 ~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~ 53 (55)
T 1iym_A 5 GVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTV 53 (55)
T ss_dssp SCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCS
T ss_pred CCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEe
Confidence 346899999999988888897 999999999999999999999999875
No 4
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.57 E-value=1.6e-15 Score=105.58 Aligned_cols=49 Identities=45% Similarity=1.034 Sum_probs=44.2
Q ss_pred ccccccccccccccCceeEEeCcCCeecHHHHHHHhhcCCCCCCcCCCC
Q 041990 177 QQCLCAICLQEFVVGLQVTRLPCSHIFHGDCVLNWLTKSKSCPLCRSEL 225 (225)
Q Consensus 177 ~~c~C~ICLee~~~g~~~~~lpC~H~FH~~CI~~WL~~~~sCPlCR~~l 225 (225)
....|+||++.|..+..+..+||+|.||..||.+|++.+.+||+||.++
T Consensus 13 ~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~ 61 (69)
T 2kiz_A 13 TEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDI 61 (69)
T ss_dssp CCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBS
T ss_pred CCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccc
Confidence 3346899999998888889999999999999999999999999999864
No 5
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=2.7e-15 Score=105.74 Aligned_cols=47 Identities=40% Similarity=1.005 Sum_probs=43.6
Q ss_pred ccccccccccccCceeEEeCcCCeecHHHHHHHhhcCCCCCCcCCCC
Q 041990 179 CLCAICLQEFVVGLQVTRLPCSHIFHGDCVLNWLTKSKSCPLCRSEL 225 (225)
Q Consensus 179 c~C~ICLee~~~g~~~~~lpC~H~FH~~CI~~WL~~~~sCPlCR~~l 225 (225)
..|+||++.|..+..+..+||+|+||..||.+|++.+.+||+||+++
T Consensus 16 ~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~ 62 (74)
T 2ep4_A 16 ELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPV 62 (74)
T ss_dssp CBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBC
T ss_pred CCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCccc
Confidence 46899999999888888899999999999999999999999999875
No 6
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.53 E-value=4.2e-15 Score=105.79 Aligned_cols=48 Identities=40% Similarity=1.141 Sum_probs=43.9
Q ss_pred cccccccccccccCceeEEeCcCCeecHHHHHHHhhcCCCCCCcCCCC
Q 041990 178 QCLCAICLQEFVVGLQVTRLPCSHIFHGDCVLNWLTKSKSCPLCRSEL 225 (225)
Q Consensus 178 ~c~C~ICLee~~~g~~~~~lpC~H~FH~~CI~~WL~~~~sCPlCR~~l 225 (225)
...|+||++.|..+..+..+||+|+||..||.+|++.+.+||+||.++
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~ 62 (78)
T 2ect_A 15 GLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSL 62 (78)
T ss_dssp SCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCC
T ss_pred CCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCcc
Confidence 346899999999888888899999999999999999999999999865
No 7
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.50 E-value=1.2e-14 Score=96.52 Aligned_cols=47 Identities=32% Similarity=0.789 Sum_probs=41.3
Q ss_pred ccccccccccccC-ceeEEeCcCCeecHHHHHHHhhcCCCCCCcCCCC
Q 041990 179 CLCAICLQEFVVG-LQVTRLPCSHIFHGDCVLNWLTKSKSCPLCRSEL 225 (225)
Q Consensus 179 c~C~ICLee~~~g-~~~~~lpC~H~FH~~CI~~WL~~~~sCPlCR~~l 225 (225)
..|+||++.+..+ ..+..+||+|+||..||.+|++.+.+||+||+++
T Consensus 6 ~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~ 53 (55)
T 2ecm_A 6 SGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPS 53 (55)
T ss_dssp CSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSS
T ss_pred CcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcC
Confidence 4689999999654 3567789999999999999999999999999875
No 8
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=7.3e-15 Score=106.12 Aligned_cols=46 Identities=33% Similarity=0.790 Sum_probs=37.6
Q ss_pred ccccccccccc-----------CceeEEeC-cCCeecHHHHHHHhhcCCCCCCcCCCC
Q 041990 180 LCAICLQEFVV-----------GLQVTRLP-CSHIFHGDCVLNWLTKSKSCPLCRSEL 225 (225)
Q Consensus 180 ~C~ICLee~~~-----------g~~~~~lp-C~H~FH~~CI~~WL~~~~sCPlCR~~l 225 (225)
.|+||++.|.. ++.++.+| |+|.||..||.+||+++++||+||+++
T Consensus 17 ~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~ 74 (81)
T 2ecl_A 17 TCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDW 74 (81)
T ss_dssp CBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBC
T ss_pred CCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCc
Confidence 46777777753 44455664 999999999999999999999999874
No 9
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.47 E-value=3e-14 Score=108.44 Aligned_cols=48 Identities=33% Similarity=0.625 Sum_probs=40.8
Q ss_pred ccccccccccccccCc---------------eeEEeCcCCeecHHHHHHHhhcCCCCCCcCCC
Q 041990 177 QQCLCAICLQEFVVGL---------------QVTRLPCSHIFHGDCVLNWLTKSKSCPLCRSE 224 (225)
Q Consensus 177 ~~c~C~ICLee~~~g~---------------~~~~lpC~H~FH~~CI~~WL~~~~sCPlCR~~ 224 (225)
++..|+||++.|..+. .+..++|+|.||..||.+||+.+.+||+||++
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~ 98 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNRE 98 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSB
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCc
Confidence 3446899999998541 35667999999999999999999999999986
No 10
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.47 E-value=3.5e-14 Score=107.98 Aligned_cols=46 Identities=33% Similarity=0.663 Sum_probs=38.1
Q ss_pred cccccccccccCc---------------eeEEeCcCCeecHHHHHHHh-----hcCCCCCCcCCCC
Q 041990 180 LCAICLQEFVVGL---------------QVTRLPCSHIFHGDCVLNWL-----TKSKSCPLCRSEL 225 (225)
Q Consensus 180 ~C~ICLee~~~g~---------------~~~~lpC~H~FH~~CI~~WL-----~~~~sCPlCR~~l 225 (225)
.|+|||+.|..+. .+..+||+|+||..||.+|+ +.+.+||+||..+
T Consensus 27 ~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~ 92 (114)
T 1v87_A 27 DCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIY 92 (114)
T ss_dssp EETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBS
T ss_pred cCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCcc
Confidence 6899999997643 33467999999999999999 4577999999853
No 11
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.45 E-value=3.4e-14 Score=98.96 Aligned_cols=48 Identities=25% Similarity=0.746 Sum_probs=41.6
Q ss_pred cccccccccccccC----ceeEEeCcCCeecHHHHHHHhhcCCCCCCcCCCC
Q 041990 178 QCLCAICLQEFVVG----LQVTRLPCSHIFHGDCVLNWLTKSKSCPLCRSEL 225 (225)
Q Consensus 178 ~c~C~ICLee~~~g----~~~~~lpC~H~FH~~CI~~WL~~~~sCPlCR~~l 225 (225)
...|+||++.+... .....++|+|+||..||.+|++.+.+||+||.++
T Consensus 10 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~ 61 (71)
T 3ng2_A 10 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 61 (71)
T ss_dssp CCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBC
T ss_pred CCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCcc
Confidence 34689999998764 4457789999999999999999999999999864
No 12
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=4.4e-14 Score=97.57 Aligned_cols=48 Identities=25% Similarity=0.746 Sum_probs=41.4
Q ss_pred cccccccccccccC----ceeEEeCcCCeecHHHHHHHhhcCCCCCCcCCCC
Q 041990 178 QCLCAICLQEFVVG----LQVTRLPCSHIFHGDCVLNWLTKSKSCPLCRSEL 225 (225)
Q Consensus 178 ~c~C~ICLee~~~g----~~~~~lpC~H~FH~~CI~~WL~~~~sCPlCR~~l 225 (225)
...|+||++.+..+ ..+..++|+|.||..||.+|++.+.+||+||.++
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~ 66 (69)
T 2ea6_A 15 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 66 (69)
T ss_dssp CCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCC
T ss_pred CCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCcc
Confidence 34689999999864 3347789999999999999999999999999875
No 13
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.44 E-value=4.3e-14 Score=96.20 Aligned_cols=47 Identities=26% Similarity=0.762 Sum_probs=41.0
Q ss_pred ccccccccccccC----ceeEEeCcCCeecHHHHHHHhhcCCCCCCcCCCC
Q 041990 179 CLCAICLQEFVVG----LQVTRLPCSHIFHGDCVLNWLTKSKSCPLCRSEL 225 (225)
Q Consensus 179 c~C~ICLee~~~g----~~~~~lpC~H~FH~~CI~~WL~~~~sCPlCR~~l 225 (225)
..|+||++.+..+ ..+..++|+|.||..||.+|++++.+||+||.++
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~ 54 (64)
T 2xeu_A 4 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 54 (64)
T ss_dssp CBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBC
T ss_pred CCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccC
Confidence 4689999999764 3457789999999999999999999999999864
No 14
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.39 E-value=1.4e-13 Score=95.29 Aligned_cols=45 Identities=33% Similarity=0.858 Sum_probs=39.5
Q ss_pred ccccccccccccCceeEEeCcCCeecHHHHHHHhhcCCCCCCcCCCC
Q 041990 179 CLCAICLQEFVVGLQVTRLPCSHIFHGDCVLNWLTKSKSCPLCRSEL 225 (225)
Q Consensus 179 c~C~ICLee~~~g~~~~~lpC~H~FH~~CI~~WL~~~~sCPlCR~~l 225 (225)
..|+||++.+.. ....+||+|.||..||.+|++.+.+||+||.++
T Consensus 6 ~~C~IC~~~~~~--~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~ 50 (68)
T 1chc_A 6 ERCPICLEDPSN--YSMALPCLHAFCYVCITRWIRQNPTCPLCKVPV 50 (68)
T ss_dssp CCCSSCCSCCCS--CEEETTTTEEESTTHHHHHHHHSCSTTTTCCCC
T ss_pred CCCeeCCccccC--CcEecCCCCeeHHHHHHHHHhCcCcCcCCChhh
Confidence 368999999864 347789999999999999999999999999864
No 15
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=2.1e-13 Score=95.50 Aligned_cols=44 Identities=45% Similarity=0.779 Sum_probs=39.0
Q ss_pred ccccccccccccCceeEEeCcCCeecHHHHHHHhhcCCCCCCcCCCC
Q 041990 179 CLCAICLQEFVVGLQVTRLPCSHIFHGDCVLNWLTKSKSCPLCRSEL 225 (225)
Q Consensus 179 c~C~ICLee~~~g~~~~~lpC~H~FH~~CI~~WL~~~~sCPlCR~~l 225 (225)
..|+||++.+... +.+||+|+||..||.+|++.+.+||+||..+
T Consensus 16 ~~C~IC~~~~~~~---~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~ 59 (71)
T 2d8t_A 16 PECAICLQTCVHP---VSLPCKHVFCYLCVKGASWLGKRCALCRQEI 59 (71)
T ss_dssp CBCSSSSSBCSSE---EEETTTEEEEHHHHHHCTTCSSBCSSSCCBC
T ss_pred CCCccCCcccCCC---EEccCCCHHHHHHHHHHHHCCCcCcCcCchh
Confidence 4689999998643 6789999999999999999999999999865
No 16
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=1.2e-13 Score=96.20 Aligned_cols=44 Identities=32% Similarity=0.911 Sum_probs=39.2
Q ss_pred cccccccccccccCceeEEeCcCCeecHHHHHHHhhcCCCCCCcCCCC
Q 041990 178 QCLCAICLQEFVVGLQVTRLPCSHIFHGDCVLNWLTKSKSCPLCRSEL 225 (225)
Q Consensus 178 ~c~C~ICLee~~~g~~~~~lpC~H~FH~~CI~~WL~~~~sCPlCR~~l 225 (225)
...|+||++.+.. +.+||+|.||..||.+|++.+.+||+||.++
T Consensus 15 ~~~C~IC~~~~~~----~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~ 58 (70)
T 2ecn_A 15 EEECCICMDGRAD----LILPCAHSFCQKCIDKWSDRHRNCPICRLQM 58 (70)
T ss_dssp CCCCSSSCCSCCS----EEETTTEEECHHHHHHSSCCCSSCHHHHHCT
T ss_pred CCCCeeCCcCccC----cccCCCCcccHHHHHHHHHCcCcCCCcCCcc
Confidence 3468999999865 6789999999999999999999999999864
No 17
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.35 E-value=5.3e-14 Score=108.94 Aligned_cols=47 Identities=34% Similarity=0.640 Sum_probs=0.4
Q ss_pred cccccccccccccC-------------c--eeEEeCcCCeecHHHHHHHhhcCCCCCCcCCC
Q 041990 178 QCLCAICLQEFVVG-------------L--QVTRLPCSHIFHGDCVLNWLTKSKSCPLCRSE 224 (225)
Q Consensus 178 ~c~C~ICLee~~~g-------------~--~~~~lpC~H~FH~~CI~~WL~~~~sCPlCR~~ 224 (225)
...|+||++.|..+ + .+..++|+|.||..||.+||+.+.+||+||++
T Consensus 48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~ 109 (117)
T 4a0k_B 48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNRE 109 (117)
T ss_dssp C-------------------------------------------------------------
T ss_pred CCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCe
Confidence 34689999999753 1 23335899999999999999999999999986
No 18
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.34 E-value=4.3e-13 Score=105.75 Aligned_cols=44 Identities=32% Similarity=0.953 Sum_probs=39.1
Q ss_pred ccccccccccccCceeEEeCcCCeecHHHHHHHhhcCCCCCCcCCCC
Q 041990 179 CLCAICLQEFVVGLQVTRLPCSHIFHGDCVLNWLTKSKSCPLCRSEL 225 (225)
Q Consensus 179 c~C~ICLee~~~g~~~~~lpC~H~FH~~CI~~WL~~~~sCPlCR~~l 225 (225)
-.|+||++.|..+ +.+||||.||..||.+|+..+.+||+||.++
T Consensus 54 ~~C~iC~~~~~~~---~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~ 97 (138)
T 4ayc_A 54 LQCIICSEYFIEA---VTLNCAHSFCSYCINEWMKRKIECPICRKDI 97 (138)
T ss_dssp SBCTTTCSBCSSE---EEETTSCEEEHHHHHHHTTTCSBCTTTCCBC
T ss_pred CCCcccCcccCCc---eECCCCCCccHHHHHHHHHcCCcCCCCCCcC
Confidence 3689999998643 6789999999999999999999999999864
No 19
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=4.1e-13 Score=97.18 Aligned_cols=47 Identities=34% Similarity=0.781 Sum_probs=39.9
Q ss_pred cccccccccccccCceeEEeCcC-----CeecHHHHHHHhhcC--CCCCCcCCCC
Q 041990 178 QCLCAICLQEFVVGLQVTRLPCS-----HIFHGDCVLNWLTKS--KSCPLCRSEL 225 (225)
Q Consensus 178 ~c~C~ICLee~~~g~~~~~lpC~-----H~FH~~CI~~WL~~~--~sCPlCR~~l 225 (225)
...|+||++++..+..+ .+||+ |.||..||.+||..+ .+||+||+++
T Consensus 15 ~~~C~IC~~~~~~~~~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~ 68 (80)
T 2d8s_A 15 QDICRICHCEGDDESPL-ITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEF 68 (80)
T ss_dssp SCCCSSSCCCCCSSSCE-ECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBC
T ss_pred CCCCeEcCccccCCCee-EeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCee
Confidence 34689999999877665 68996 999999999999875 4899999864
No 20
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=9e-13 Score=92.50 Aligned_cols=45 Identities=29% Similarity=0.665 Sum_probs=38.4
Q ss_pred ccccccccccccCceeEEeCcCCeecHHHHHHHhhcCCCCCCcCCCC
Q 041990 179 CLCAICLQEFVVGLQVTRLPCSHIFHGDCVLNWLTKSKSCPLCRSEL 225 (225)
Q Consensus 179 c~C~ICLee~~~g~~~~~lpC~H~FH~~CI~~WL~~~~sCPlCR~~l 225 (225)
..|+||++.+... +..++|+|.||..||.+|++.+.+||+||.++
T Consensus 16 ~~C~IC~~~~~~p--~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~ 60 (72)
T 2djb_A 16 ILCSICKGYLIDA--TTITECLHTFCKSCIVRHFYYSNRCPKCNIVV 60 (72)
T ss_dssp GSCTTTSSCCSSC--EECSSSCCEECHHHHHHHHHHCSSCTTTCCCC
T ss_pred CCCCCCChHHHCc--CEECCCCCHHHHHHHHHHHHcCCcCCCcCccc
Confidence 4689999998753 33349999999999999999999999999864
No 21
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=9.1e-13 Score=95.17 Aligned_cols=48 Identities=27% Similarity=0.607 Sum_probs=40.9
Q ss_pred cccccccccccccCce-eEEeCcCCeecHHHHHHHhhcC---CCCCCcCCCC
Q 041990 178 QCLCAICLQEFVVGLQ-VTRLPCSHIFHGDCVLNWLTKS---KSCPLCRSEL 225 (225)
Q Consensus 178 ~c~C~ICLee~~~g~~-~~~lpC~H~FH~~CI~~WL~~~---~sCPlCR~~l 225 (225)
...|+||++.|..+.. .+.+||+|.||..||.+|++.+ .+||+||..+
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~ 66 (88)
T 2ct2_A 15 VLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKIT 66 (88)
T ss_dssp CCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCB
T ss_pred CCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcc
Confidence 3468999999987654 6778999999999999999876 7899999853
No 22
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=9.7e-13 Score=94.28 Aligned_cols=45 Identities=27% Similarity=0.596 Sum_probs=39.3
Q ss_pred cccccccccccccCceeEEeCcCCeecHHHHHHHhhcCCCCCCcCCCC
Q 041990 178 QCLCAICLQEFVVGLQVTRLPCSHIFHGDCVLNWLTKSKSCPLCRSEL 225 (225)
Q Consensus 178 ~c~C~ICLee~~~g~~~~~lpC~H~FH~~CI~~WL~~~~sCPlCR~~l 225 (225)
...|+||++.+..+ +.+||+|+||..||.+|++...+||+||.++
T Consensus 15 ~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~ 59 (81)
T 2csy_A 15 PFRCFICRQAFQNP---VVTKCRHYFCESCALEHFRATPRCYICDQPT 59 (81)
T ss_dssp CSBCSSSCSBCCSE---EECTTSCEEEHHHHHHHHHHCSBCSSSCCBC
T ss_pred CCCCcCCCchhcCe---eEccCCCHhHHHHHHHHHHCCCcCCCcCccc
Confidence 34689999998653 5689999999999999999999999999864
No 23
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=2.3e-12 Score=90.15 Aligned_cols=45 Identities=27% Similarity=0.676 Sum_probs=37.8
Q ss_pred cccccccccccccCceeEEeCcCCeecHHHHHHHhh---cCCCCCCcCCCC
Q 041990 178 QCLCAICLQEFVVGLQVTRLPCSHIFHGDCVLNWLT---KSKSCPLCRSEL 225 (225)
Q Consensus 178 ~c~C~ICLee~~~g~~~~~lpC~H~FH~~CI~~WL~---~~~sCPlCR~~l 225 (225)
...|+||++.+.. .+.+||+|.||..||.+|++ .+..||+||.++
T Consensus 20 ~~~C~IC~~~~~~---~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~ 67 (73)
T 2ysl_A 20 EVICPICLDILQK---PVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSV 67 (73)
T ss_dssp CCBCTTTCSBCSS---EEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCC
T ss_pred CCEeccCCcccCC---eEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcC
Confidence 3468999999874 35679999999999999997 456899999875
No 24
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=1.5e-12 Score=89.72 Aligned_cols=45 Identities=22% Similarity=0.588 Sum_probs=37.9
Q ss_pred cccccccccccccCceeEEeCcCCeecHHHHHHHhh-cCCCCCCcCCCC
Q 041990 178 QCLCAICLQEFVVGLQVTRLPCSHIFHGDCVLNWLT-KSKSCPLCRSEL 225 (225)
Q Consensus 178 ~c~C~ICLee~~~g~~~~~lpC~H~FH~~CI~~WL~-~~~sCPlCR~~l 225 (225)
...|+||++.+..+ ..++|+|+||..||.+|++ .+.+||+||.++
T Consensus 15 ~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 60 (66)
T 2ecy_A 15 KYKCEKCHLVLCSP---KQTECGHRFCESCMAALLSSSSPKCTACQESI 60 (66)
T ss_dssp CEECTTTCCEESSC---CCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCC
T ss_pred CCCCCCCChHhcCe---eECCCCCHHHHHHHHHHHHhCcCCCCCCCcCC
Confidence 34689999998755 3479999999999999995 567899999875
No 25
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.27 E-value=2.2e-12 Score=91.13 Aligned_cols=43 Identities=28% Similarity=0.763 Sum_probs=37.6
Q ss_pred ccccccccccccCceeEEeC-cCCeecHHHHHHHhhcC--CCCCCcCCC
Q 041990 179 CLCAICLQEFVVGLQVTRLP-CSHIFHGDCVLNWLTKS--KSCPLCRSE 224 (225)
Q Consensus 179 c~C~ICLee~~~g~~~~~lp-C~H~FH~~CI~~WL~~~--~sCPlCR~~ 224 (225)
..|+||++.|..+ +.+| |+|.||..||.+|++.+ .+||+||.+
T Consensus 16 ~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~ 61 (74)
T 2yur_A 16 LLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQN 61 (74)
T ss_dssp GSCSSSCCCCTTC---EECSSSCCEECTTHHHHHHHHSSSSCCSSSCCS
T ss_pred CCCcCCChHHhCC---eEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCc
Confidence 4689999999754 5689 99999999999999875 689999986
No 26
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.26 E-value=2.4e-12 Score=99.16 Aligned_cols=48 Identities=25% Similarity=0.746 Sum_probs=41.7
Q ss_pred cccccccccccccC----ceeEEeCcCCeecHHHHHHHhhcCCCCCCcCCCC
Q 041990 178 QCLCAICLQEFVVG----LQVTRLPCSHIFHGDCVLNWLTKSKSCPLCRSEL 225 (225)
Q Consensus 178 ~c~C~ICLee~~~g----~~~~~lpC~H~FH~~CI~~WL~~~~sCPlCR~~l 225 (225)
...|+||++.|..+ ..++.++|||+||..||.+|++.+.+||+||+.+
T Consensus 7 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~ 58 (133)
T 4ap4_A 7 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 58 (133)
T ss_dssp SCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBC
T ss_pred CCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcC
Confidence 34689999999764 4457889999999999999999999999999864
No 27
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.26 E-value=2e-12 Score=96.57 Aligned_cols=44 Identities=32% Similarity=0.770 Sum_probs=38.1
Q ss_pred ccccccccccccCceeEE-eCcCCeecHHHHHHHhhcC-CCCCCcCCCC
Q 041990 179 CLCAICLQEFVVGLQVTR-LPCSHIFHGDCVLNWLTKS-KSCPLCRSEL 225 (225)
Q Consensus 179 c~C~ICLee~~~g~~~~~-lpC~H~FH~~CI~~WL~~~-~sCPlCR~~l 225 (225)
..|+||++.|.. .+. ++|||.||..||.+|+..+ .+||+||.++
T Consensus 23 ~~C~IC~~~~~~---p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~ 68 (100)
T 3lrq_A 23 FRCFICMEKLRD---ARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPL 68 (100)
T ss_dssp TBCTTTCSBCSS---EEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBC
T ss_pred CCCccCCccccC---ccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcC
Confidence 468999999964 345 8999999999999999987 6999999864
No 28
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.26 E-value=2.6e-12 Score=91.19 Aligned_cols=45 Identities=20% Similarity=0.462 Sum_probs=38.9
Q ss_pred cccccccccccccCceeEEeCcCCeecHHHHHHHhhc-CCCCCCcCCCC
Q 041990 178 QCLCAICLQEFVVGLQVTRLPCSHIFHGDCVLNWLTK-SKSCPLCRSEL 225 (225)
Q Consensus 178 ~c~C~ICLee~~~g~~~~~lpC~H~FH~~CI~~WL~~-~~sCPlCR~~l 225 (225)
.-.|+||++.|..+ +.+||||+||..||.+|++. +.+||+||.++
T Consensus 8 ~~~C~IC~~~~~~P---v~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~ 53 (78)
T 1t1h_A 8 YFRCPISLELMKDP---VIVSTGQTYERSSIQKWLDAGHKTCPKSQETL 53 (78)
T ss_dssp SSSCTTTSCCCSSE---EEETTTEEEEHHHHHHHHTTTCCBCTTTCCBC
T ss_pred cCCCCCccccccCC---EEcCCCCeecHHHHHHHHHHCcCCCCCCcCCC
Confidence 34689999998754 56799999999999999997 78999999864
No 29
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.24 E-value=4.2e-12 Score=94.24 Aligned_cols=44 Identities=27% Similarity=0.745 Sum_probs=38.2
Q ss_pred ccccccccccccCceeEEe-CcCCeecHHHHHHHhhcCCCCCCcCCCC
Q 041990 179 CLCAICLQEFVVGLQVTRL-PCSHIFHGDCVLNWLTKSKSCPLCRSEL 225 (225)
Q Consensus 179 c~C~ICLee~~~g~~~~~l-pC~H~FH~~CI~~WL~~~~sCPlCR~~l 225 (225)
..|+||++.|..+ +.+ +|||.||..||.+|+..+.+||+||.++
T Consensus 23 ~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~ 67 (99)
T 2y43_A 23 LRCGICFEYFNIA---MIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTV 67 (99)
T ss_dssp TBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHHTTCCBCTTTCCBC
T ss_pred CCcccCChhhCCc---CEECCCCCHhhHHHHHHHHHCCCCCCCCCCcC
Confidence 3689999998753 445 8999999999999999999999999864
No 30
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.22 E-value=6.1e-12 Score=94.88 Aligned_cols=45 Identities=31% Similarity=0.844 Sum_probs=38.6
Q ss_pred cccccccccccccCceeEEe-CcCCeecHHHHHHHhhcCCCCCCcCCCC
Q 041990 178 QCLCAICLQEFVVGLQVTRL-PCSHIFHGDCVLNWLTKSKSCPLCRSEL 225 (225)
Q Consensus 178 ~c~C~ICLee~~~g~~~~~l-pC~H~FH~~CI~~WL~~~~sCPlCR~~l 225 (225)
...|+||++.+.. . +.+ ||||.||..||.+|+..+.+||+||..+
T Consensus 15 ~~~C~IC~~~~~~--p-~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~ 60 (108)
T 2ckl_A 15 HLMCVLCGGYFID--A-TTIIECLHSFCKTCIVRYLETSKYCPICDVQV 60 (108)
T ss_dssp GTBCTTTSSBCSS--E-EEETTTCCEEEHHHHHHHHTSCSBCTTTCCBS
T ss_pred cCCCccCChHHhC--c-CEeCCCCChhhHHHHHHHHHhCCcCcCCCccc
Confidence 3468999999864 3 455 9999999999999999999999999864
No 31
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.22 E-value=7.1e-12 Score=89.48 Aligned_cols=44 Identities=27% Similarity=0.658 Sum_probs=38.3
Q ss_pred ccccccccccccCceeEEeCcCCeecHHHHHHHhhc------CCCCCCcCCCC
Q 041990 179 CLCAICLQEFVVGLQVTRLPCSHIFHGDCVLNWLTK------SKSCPLCRSEL 225 (225)
Q Consensus 179 c~C~ICLee~~~g~~~~~lpC~H~FH~~CI~~WL~~------~~sCPlCR~~l 225 (225)
..|+||++.+..+ ..+||+|.||..||.+|++. ...||+||.++
T Consensus 20 ~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~ 69 (85)
T 2ecw_A 20 VTCPICLELLKEP---VSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPY 69 (85)
T ss_dssp TSCTTTCSCCSSC---EECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCC
T ss_pred CCCcCCChhhCcc---eeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcC
Confidence 4689999998754 46899999999999999987 67899999864
No 32
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.20 E-value=7.3e-12 Score=96.70 Aligned_cols=44 Identities=27% Similarity=0.556 Sum_probs=37.6
Q ss_pred ccccccccccccCceeEEeCcCCeecHHHHHHHhhcCC-CCCCcCCCC
Q 041990 179 CLCAICLQEFVVGLQVTRLPCSHIFHGDCVLNWLTKSK-SCPLCRSEL 225 (225)
Q Consensus 179 c~C~ICLee~~~g~~~~~lpC~H~FH~~CI~~WL~~~~-sCPlCR~~l 225 (225)
..|+||++.|..+ +.+||||.||..||.+|+..+. +||+||.++
T Consensus 53 ~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 97 (124)
T 3fl2_A 53 FQCICCQELVFRP---ITTVCQHNVCKDCLDRSFRAQVFSCPACRYDL 97 (124)
T ss_dssp TBCTTTSSBCSSE---EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBC
T ss_pred CCCCcCChHHcCc---EEeeCCCcccHHHHHHHHhHCcCCCCCCCccC
Confidence 4689999998744 6679999999999999998654 899999864
No 33
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.20 E-value=2.6e-12 Score=91.02 Aligned_cols=45 Identities=27% Similarity=0.628 Sum_probs=38.3
Q ss_pred cccccccccccccCceeEEeCcCCeecHHHHHHHhhc-------CCCCCCcCCCC
Q 041990 178 QCLCAICLQEFVVGLQVTRLPCSHIFHGDCVLNWLTK-------SKSCPLCRSEL 225 (225)
Q Consensus 178 ~c~C~ICLee~~~g~~~~~lpC~H~FH~~CI~~WL~~-------~~sCPlCR~~l 225 (225)
...|+||++.|..+ +.+||+|.||..||.+|++. ...||+||.++
T Consensus 12 ~~~C~IC~~~~~~p---~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~ 63 (79)
T 2egp_A 12 EVTCPICLELLTEP---LSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISY 63 (79)
T ss_dssp CCEETTTTEECSSC---CCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCC
T ss_pred CCCCcCCCcccCCe---eECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcC
Confidence 34689999998754 45799999999999999987 66899999864
No 34
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.19 E-value=1.1e-11 Score=88.37 Aligned_cols=46 Identities=24% Similarity=0.593 Sum_probs=38.8
Q ss_pred ccccccccccccccCceeEEeCcCCeecHHHHHHHhhcC--CCCCCcCCC
Q 041990 177 QQCLCAICLQEFVVGLQVTRLPCSHIFHGDCVLNWLTKS--KSCPLCRSE 224 (225)
Q Consensus 177 ~~c~C~ICLee~~~g~~~~~lpC~H~FH~~CI~~WL~~~--~sCPlCR~~ 224 (225)
....|+||.+.+..+.. ...|+|.||..||.+||+++ .+||+||++
T Consensus 14 ~i~~C~IC~~~i~~g~~--C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~ 61 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQS--CETCGIRMHLPCVAKYFQSNAEPRCPHCNDY 61 (74)
T ss_dssp SSCBCSSSCCBCSSSEE--CSSSCCEECHHHHHHHSTTCSSCCCTTTCSC
T ss_pred CCCcCcchhhHcccCCc--cCCCCchhhHHHHHHHHHhcCCCCCCCCcCc
Confidence 33478999999986643 33899999999999999987 899999986
No 35
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.18 E-value=1e-11 Score=95.59 Aligned_cols=50 Identities=24% Similarity=0.709 Sum_probs=42.2
Q ss_pred cccccccccccccccC----ceeEEeCcCCeecHHHHHHHhhcCCCCCCcCCCC
Q 041990 176 RQQCLCAICLQEFVVG----LQVTRLPCSHIFHGDCVLNWLTKSKSCPLCRSEL 225 (225)
Q Consensus 176 ~~~c~C~ICLee~~~g----~~~~~lpC~H~FH~~CI~~WL~~~~sCPlCR~~l 225 (225)
.+...|+||++.+..+ ...+.++|+|+||..||.+|++.+++||+||.++
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~ 123 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 123 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBC
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcC
Confidence 3445689999999764 3347789999999999999999999999999864
No 36
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=1.7e-11 Score=83.55 Aligned_cols=41 Identities=29% Similarity=0.693 Sum_probs=34.9
Q ss_pred cccccccccccccCceeEEeCcCCeecHHHHHHHhh---cCCCCCCc
Q 041990 178 QCLCAICLQEFVVGLQVTRLPCSHIFHGDCVLNWLT---KSKSCPLC 221 (225)
Q Consensus 178 ~c~C~ICLee~~~g~~~~~lpC~H~FH~~CI~~WL~---~~~sCPlC 221 (225)
...|+||++.+..+ +.+||+|+||..||.+|++ .+..||+|
T Consensus 20 ~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 20 EVICPICLDILQKP---VTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCBCTTTCSBCSSC---EECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred CCCCCcCCchhCCe---EEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 34689999998754 6679999999999999998 45689998
No 37
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.18 E-value=1.6e-11 Score=84.23 Aligned_cols=47 Identities=21% Similarity=0.441 Sum_probs=38.1
Q ss_pred cccccccc-ccccCcee-EEeCcCCeecHHHHHHHhhc-CCCCCCcCCCC
Q 041990 179 CLCAICLQ-EFVVGLQV-TRLPCSHIFHGDCVLNWLTK-SKSCPLCRSEL 225 (225)
Q Consensus 179 c~C~ICLe-e~~~g~~~-~~lpC~H~FH~~CI~~WL~~-~~sCPlCR~~l 225 (225)
..|+||++ .+..+... ..++|||+||..||.+|+.+ +..||+||.++
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 53 (65)
T 1g25_A 4 QGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPL 53 (65)
T ss_dssp TCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCC
T ss_pred CcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCcc
Confidence 36899999 77766433 45799999999999999765 56899999864
No 38
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.17 E-value=9.8e-12 Score=88.74 Aligned_cols=44 Identities=34% Similarity=0.739 Sum_probs=38.1
Q ss_pred ccccccccccccCceeEEeCcCCeecHHHHHHHhhc------CCCCCCcCCCC
Q 041990 179 CLCAICLQEFVVGLQVTRLPCSHIFHGDCVLNWLTK------SKSCPLCRSEL 225 (225)
Q Consensus 179 c~C~ICLee~~~g~~~~~lpC~H~FH~~CI~~WL~~------~~sCPlCR~~l 225 (225)
..|+||++.+... ..+||+|.||..||.+|++. ...||+||..+
T Consensus 20 ~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~ 69 (85)
T 2ecv_A 20 VTCPICLELLTQP---LSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISY 69 (85)
T ss_dssp CCCTTTCSCCSSC---BCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSS
T ss_pred CCCCCCCcccCCc---eeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCcc
Confidence 4689999998754 55799999999999999987 78999999864
No 39
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.16 E-value=1.7e-11 Score=89.49 Aligned_cols=45 Identities=27% Similarity=0.712 Sum_probs=37.9
Q ss_pred cccccccccccccCceeEEeC-cCCeecHHHHHHHhhcC--CCCCCcCCCC
Q 041990 178 QCLCAICLQEFVVGLQVTRLP-CSHIFHGDCVLNWLTKS--KSCPLCRSEL 225 (225)
Q Consensus 178 ~c~C~ICLee~~~g~~~~~lp-C~H~FH~~CI~~WL~~~--~sCPlCR~~l 225 (225)
...|+||++.|..+ +.+| |||.||..||.+|+..+ .+||+||.++
T Consensus 13 ~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 13 ELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQND 60 (92)
T ss_dssp TTEETTTTEECSSC---EECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred CCCCCCCChhhcCc---eECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcC
Confidence 34689999998754 6789 99999999999999754 5899999863
No 40
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.15 E-value=1.9e-11 Score=98.72 Aligned_cols=45 Identities=38% Similarity=0.863 Sum_probs=37.9
Q ss_pred ccccccccccccCceeEEeCcCCeecHHHHHHHhhc-CCCCCCcCCCC
Q 041990 179 CLCAICLQEFVVGLQVTRLPCSHIFHGDCVLNWLTK-SKSCPLCRSEL 225 (225)
Q Consensus 179 c~C~ICLee~~~g~~~~~lpC~H~FH~~CI~~WL~~-~~sCPlCR~~l 225 (225)
..|+||++.|.. .+..+||+|.||..||.+|+.. +.+||+||.++
T Consensus 55 ~~C~IC~~~~~~--p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 100 (165)
T 2ckl_B 55 LMCPICLDMLKN--TMTTKECLHRFCADCIITALRSGNKECPTCRKKL 100 (165)
T ss_dssp HBCTTTSSBCSS--EEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBC
T ss_pred CCCcccChHhhC--cCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcC
Confidence 468999999874 3333499999999999999997 77899999864
No 41
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.15 E-value=1.4e-11 Score=92.87 Aligned_cols=44 Identities=36% Similarity=0.849 Sum_probs=37.5
Q ss_pred ccccccccccccCceeEEeCcCCeecHHHHHHHhhcCC---CCCCcCCCC
Q 041990 179 CLCAICLQEFVVGLQVTRLPCSHIFHGDCVLNWLTKSK---SCPLCRSEL 225 (225)
Q Consensus 179 c~C~ICLee~~~g~~~~~lpC~H~FH~~CI~~WL~~~~---sCPlCR~~l 225 (225)
..|+||++.+..+ ..+||||.||..||.+|+..+. +||+||.++
T Consensus 22 ~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~ 68 (112)
T 1jm7_A 22 LECPICLELIKEP---VSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDI 68 (112)
T ss_dssp TSCSSSCCCCSSC---CBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCC
T ss_pred CCCcccChhhcCe---EECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcC
Confidence 3689999998654 4579999999999999998754 899999864
No 42
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.12 E-value=2.5e-11 Score=80.97 Aligned_cols=40 Identities=28% Similarity=0.870 Sum_probs=34.2
Q ss_pred ccccccccccccCceeEEeCcCCeecHHHHHHHhh---cCCCCCCc
Q 041990 179 CLCAICLQEFVVGLQVTRLPCSHIFHGDCVLNWLT---KSKSCPLC 221 (225)
Q Consensus 179 c~C~ICLee~~~g~~~~~lpC~H~FH~~CI~~WL~---~~~sCPlC 221 (225)
..|+||++.+..+ +.+||+|+||..||.+|+. .+.+||+|
T Consensus 16 ~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 16 ASCSVCLEYLKEP---VIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CBCSSSCCBCSSC---CCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred CCCccCCcccCcc---EeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 4689999999765 5589999999999999954 56789998
No 43
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.12 E-value=2.8e-11 Score=92.74 Aligned_cols=46 Identities=26% Similarity=0.670 Sum_probs=38.9
Q ss_pred ccccccccccccccCceeEEeCcCCeecHHHHHHHhhcCC-CCCCcCCCC
Q 041990 177 QQCLCAICLQEFVVGLQVTRLPCSHIFHGDCVLNWLTKSK-SCPLCRSEL 225 (225)
Q Consensus 177 ~~c~C~ICLee~~~g~~~~~lpC~H~FH~~CI~~WL~~~~-sCPlCR~~l 225 (225)
+...|+||++.+..+ +.++|+|+||..||.+|++.+. +||+||.++
T Consensus 17 ~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 63 (118)
T 3hct_A 17 SKYECPICLMALREA---VQTPCGHRFCKACIIKSIRDAGHKCPVDNEIL 63 (118)
T ss_dssp GGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBC
T ss_pred CCCCCCcCChhhcCe---EECCcCChhhHHHHHHHHhhCCCCCCCCCCCc
Confidence 334789999998754 5679999999999999998865 999999864
No 44
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.12 E-value=1.4e-11 Score=93.79 Aligned_cols=44 Identities=36% Similarity=0.916 Sum_probs=38.0
Q ss_pred ccccccccccccCceeEEeCcCCeecHHHHHHHhhc-CCCCCCcCCCC
Q 041990 179 CLCAICLQEFVVGLQVTRLPCSHIFHGDCVLNWLTK-SKSCPLCRSEL 225 (225)
Q Consensus 179 c~C~ICLee~~~g~~~~~lpC~H~FH~~CI~~WL~~-~~sCPlCR~~l 225 (225)
..|+||++.+..+ +.+||||.||..||.+|+.. +.+||+||..+
T Consensus 16 ~~C~iC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 60 (115)
T 3l11_A 16 CQCGICMEILVEP---VTLPCNHTLCKPCFQSTVEKASLCCPFCRRRV 60 (115)
T ss_dssp HBCTTTCSBCSSC---EECTTSCEECHHHHCCCCCTTTSBCTTTCCBC
T ss_pred CCCccCCcccCce---eEcCCCCHHhHHHHHHHHhHCcCCCCCCCccc
Confidence 3689999998654 66799999999999999987 67899999864
No 45
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.12 E-value=3.1e-11 Score=96.77 Aligned_cols=44 Identities=27% Similarity=0.615 Sum_probs=37.9
Q ss_pred ccccccccccccCceeEEeCcCCeecHHHHHHHhhcCC-CCCCcCCCC
Q 041990 179 CLCAICLQEFVVGLQVTRLPCSHIFHGDCVLNWLTKSK-SCPLCRSEL 225 (225)
Q Consensus 179 c~C~ICLee~~~g~~~~~lpC~H~FH~~CI~~WL~~~~-sCPlCR~~l 225 (225)
..|+||++.|..+ +.+||+|.||..||.+|+.... +||+||.++
T Consensus 79 ~~C~IC~~~~~~p---v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 123 (150)
T 1z6u_A 79 FMCVCCQELVYQP---VTTECFHNVCKDCLQRSFKAQVFSCPACRHDL 123 (150)
T ss_dssp TBCTTTSSBCSSE---EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBC
T ss_pred CEeecCChhhcCC---EEcCCCCchhHHHHHHHHHhCCCcCCCCCccC
Confidence 4689999998654 5589999999999999999765 899999864
No 46
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.09 E-value=4.6e-11 Score=91.05 Aligned_cols=44 Identities=30% Similarity=0.651 Sum_probs=38.0
Q ss_pred ccccccccccccCceeEEeCcCCeecHHHHHHHhhc-CCCCCCcCCCC
Q 041990 179 CLCAICLQEFVVGLQVTRLPCSHIFHGDCVLNWLTK-SKSCPLCRSEL 225 (225)
Q Consensus 179 c~C~ICLee~~~g~~~~~lpC~H~FH~~CI~~WL~~-~~sCPlCR~~l 225 (225)
..|+||++.+..+ +.+||||.||..||.+|++. +.+||+||.++
T Consensus 24 ~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 68 (116)
T 1rmd_A 24 ISCQICEHILADP---VETSCKHLFCRICILRCLKVMGSYCPSCRYPC 68 (116)
T ss_dssp TBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBC
T ss_pred CCCCCCCcHhcCc---EEcCCCCcccHHHHHHHHhHCcCcCCCCCCCC
Confidence 3689999998643 55899999999999999987 77999999864
No 47
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.06 E-value=7.8e-11 Score=85.69 Aligned_cols=44 Identities=20% Similarity=0.237 Sum_probs=39.5
Q ss_pred ccccccccccccCceeEEeCcCCeecHHHHHHHhhcCCCCCCcCCCC
Q 041990 179 CLCAICLQEFVVGLQVTRLPCSHIFHGDCVLNWLTKSKSCPLCRSEL 225 (225)
Q Consensus 179 c~C~ICLee~~~g~~~~~lpC~H~FH~~CI~~WL~~~~sCPlCR~~l 225 (225)
-.|+||++.|..+ +.+||||+|++.||.+|+..+.+||+||.++
T Consensus 15 ~~CpI~~~~m~dP---V~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l 58 (85)
T 2kr4_A 15 FRDPLMDTLMTDP---VRLPSGTVMDRSIILRHLLNSPTDPFNRQML 58 (85)
T ss_dssp TBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHCSBCTTTCCBC
T ss_pred eECcccCchhcCC---eECCCCCEECHHHHHHHHhcCCCCCCCcCCC
Confidence 4689999999765 7789999999999999999999999999864
No 48
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.03 E-value=1.1e-10 Score=87.58 Aligned_cols=45 Identities=22% Similarity=0.265 Sum_probs=40.0
Q ss_pred cccccccccccccCceeEEeCcCCeecHHHHHHHhhcCCCCCCcCCCC
Q 041990 178 QCLCAICLQEFVVGLQVTRLPCSHIFHGDCVLNWLTKSKSCPLCRSEL 225 (225)
Q Consensus 178 ~c~C~ICLee~~~g~~~~~lpC~H~FH~~CI~~WL~~~~sCPlCR~~l 225 (225)
.-.|+||++.|..+ +.+||||+|++.||.+|+..+.+||+||.++
T Consensus 29 ~~~CpI~~~~m~dP---V~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l 73 (100)
T 2kre_A 29 EFRDPLMDTLMTDP---VRLPSGTIMDRSIILRHLLNSPTDPFNRQTL 73 (100)
T ss_dssp TTBCTTTCSBCSSE---EEETTTEEEEHHHHHHHTTSCSBCSSSCCBC
T ss_pred hhCCcCccCcccCC---eECCCCCEEchHHHHHHHHcCCCCCCCCCCC
Confidence 34689999999765 7789999999999999999999999999864
No 49
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.02 E-value=1.7e-10 Score=79.52 Aligned_cols=44 Identities=25% Similarity=0.539 Sum_probs=37.2
Q ss_pred ccccccccccccCceeEEe--CcCCe-ecHHHHHHHhhcCCCCCCcCCCC
Q 041990 179 CLCAICLQEFVVGLQVTRL--PCSHI-FHGDCVLNWLTKSKSCPLCRSEL 225 (225)
Q Consensus 179 c~C~ICLee~~~g~~~~~l--pC~H~-FH~~CI~~WL~~~~sCPlCR~~l 225 (225)
..|+||++..... ..+ ||||. |+..|+.+|.+.+..||+||+++
T Consensus 9 ~~C~IC~~~~~~~---~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i 55 (64)
T 2vje_A 9 EPCVICQGRPKNG---CIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPI 55 (64)
T ss_dssp SCCTTTSSSCSCE---EEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCC
T ss_pred CCCCcCCCCCCCE---EEECCCCCChhhHHHHHHHHHHcCCcCCCcCcch
Confidence 4689999986532 444 99999 89999999999999999999875
No 50
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.00 E-value=2e-10 Score=85.90 Aligned_cols=44 Identities=23% Similarity=0.207 Sum_probs=39.5
Q ss_pred ccccccccccccCceeEEeCcC-CeecHHHHHHHhhcCCCCCCcCCCC
Q 041990 179 CLCAICLQEFVVGLQVTRLPCS-HIFHGDCVLNWLTKSKSCPLCRSEL 225 (225)
Q Consensus 179 c~C~ICLee~~~g~~~~~lpC~-H~FH~~CI~~WL~~~~sCPlCR~~l 225 (225)
-.|+||++.|..+ +.+||| |+|++.||.+|+..+.+||+||.++
T Consensus 23 ~~CpI~~~~m~dP---V~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l 67 (98)
T 1wgm_A 23 FLDPIMSTLMCDP---VVLPSSRVTVDRSTIARHLLSDQTDPFNRSPL 67 (98)
T ss_dssp TBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHTTTSCBCTTTCSBC
T ss_pred cCCcCccccccCC---eECCCCCeEECHHHHHHHHHhCCCCCCCCCCC
Confidence 4689999999765 678999 9999999999999989999999864
No 51
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.99 E-value=2.5e-10 Score=78.50 Aligned_cols=45 Identities=20% Similarity=0.439 Sum_probs=37.1
Q ss_pred cccccccccccccCceeEEe--CcCCe-ecHHHHHHHhhcCCCCCCcCCCC
Q 041990 178 QCLCAICLQEFVVGLQVTRL--PCSHI-FHGDCVLNWLTKSKSCPLCRSEL 225 (225)
Q Consensus 178 ~c~C~ICLee~~~g~~~~~l--pC~H~-FH~~CI~~WL~~~~sCPlCR~~l 225 (225)
...|+||++.... ...+ ||||. ||..|+.+|.+.+..||+||+++
T Consensus 7 ~~~C~IC~~~~~~---~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i 54 (63)
T 2vje_B 7 LKPCSLCEKRPRD---GNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEI 54 (63)
T ss_dssp GSBCTTTSSSBSC---EEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBC
T ss_pred CCCCcccCCcCCC---eEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchh
Confidence 3468999987543 2344 99998 99999999999889999999875
No 52
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.97 E-value=2.2e-10 Score=82.27 Aligned_cols=49 Identities=18% Similarity=0.414 Sum_probs=36.7
Q ss_pred ccccccccccccccCce-eEEeCcCCeecHHHHHHHhhc-CCCCCCcCCCC
Q 041990 177 QQCLCAICLQEFVVGLQ-VTRLPCSHIFHGDCVLNWLTK-SKSCPLCRSEL 225 (225)
Q Consensus 177 ~~c~C~ICLee~~~g~~-~~~lpC~H~FH~~CI~~WL~~-~~sCPlCR~~l 225 (225)
+...|+||++.+..... ...++|||.||..|+.+|++. ...||+||+++
T Consensus 10 ~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~ 60 (78)
T 1e4u_A 10 DPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY 60 (78)
T ss_dssp CCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBC
T ss_pred cCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCcc
Confidence 34478999998864322 222359999999999999854 67899999864
No 53
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.97 E-value=1.1e-10 Score=92.60 Aligned_cols=46 Identities=22% Similarity=0.548 Sum_probs=38.7
Q ss_pred cccccccccccccccCceeEEeCcCCeecHHHHHHHhhcCC-CCCCcCCC
Q 041990 176 RQQCLCAICLQEFVVGLQVTRLPCSHIFHGDCVLNWLTKSK-SCPLCRSE 224 (225)
Q Consensus 176 ~~~c~C~ICLee~~~g~~~~~lpC~H~FH~~CI~~WL~~~~-sCPlCR~~ 224 (225)
.+...|+||++.+..+ +.++|||.||..||.+|++... +||+||.+
T Consensus 29 ~~~~~C~IC~~~~~~p---v~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~ 75 (141)
T 3knv_A 29 EAKYLCSACRNVLRRP---FQAQCGHRYCSFCLASILSSGPQNCAACVHE 75 (141)
T ss_dssp CGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHGGGSCEECHHHHHT
T ss_pred CcCcCCCCCChhhcCc---EECCCCCccCHHHHHHHHhcCCCCCCCCCCc
Confidence 3445789999998755 5589999999999999998765 89999975
No 54
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.96 E-value=2.9e-10 Score=103.96 Aligned_cols=44 Identities=34% Similarity=0.905 Sum_probs=38.5
Q ss_pred ccccccccccccCceeEEeCcCCeecHHHHHHHhh-cCCCCCCcCCCC
Q 041990 179 CLCAICLQEFVVGLQVTRLPCSHIFHGDCVLNWLT-KSKSCPLCRSEL 225 (225)
Q Consensus 179 c~C~ICLee~~~g~~~~~lpC~H~FH~~CI~~WL~-~~~sCPlCR~~l 225 (225)
..|+||++.+.. .+.+||||.||..||..|+. .+.+||+||.++
T Consensus 333 ~~C~ICle~~~~---pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i 377 (389)
T 2y1n_A 333 QLCKICAENDKD---VKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEI 377 (389)
T ss_dssp SBCTTTSSSBCC---EEEETTCCEECHHHHHHHHHHTCSBCTTTCCBC
T ss_pred CCCCccCcCCCC---eEEeCCCChhhHHHHHHHHhcCCCCCCCCCCcc
Confidence 468999998854 47789999999999999999 688999999864
No 55
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.93 E-value=1.7e-10 Score=88.26 Aligned_cols=42 Identities=29% Similarity=0.698 Sum_probs=36.3
Q ss_pred ccccccccccccCceeEEe-CcCCeecHHHHHHHhhcCCCCCCcCCCC
Q 041990 179 CLCAICLQEFVVGLQVTRL-PCSHIFHGDCVLNWLTKSKSCPLCRSEL 225 (225)
Q Consensus 179 c~C~ICLee~~~g~~~~~l-pC~H~FH~~CI~~WL~~~~sCPlCR~~l 225 (225)
..|+||++.|..+ +.+ ||||.||..||.+|+. ..||+||.++
T Consensus 23 ~~C~IC~~~~~~p---v~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~ 65 (117)
T 1jm7_B 23 LRCSRCTNILREP---VCLGGCEHIFCSNCVSDCIG--TGCPVCYTPA 65 (117)
T ss_dssp TSCSSSCSCCSSC---BCCCSSSCCBCTTTGGGGTT--TBCSSSCCBC
T ss_pred CCCCCCChHhhCc---cEeCCCCCHHHHHHHHHHhc--CCCcCCCCcC
Confidence 4689999999754 556 9999999999999998 8899999864
No 56
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.89 E-value=4.9e-10 Score=79.18 Aligned_cols=40 Identities=28% Similarity=0.823 Sum_probs=34.3
Q ss_pred ccccccccccccCceeEEeCcCCe-ecHHHHHHHhhcCCCCCCcCCCC
Q 041990 179 CLCAICLQEFVVGLQVTRLPCSHI-FHGDCVLNWLTKSKSCPLCRSEL 225 (225)
Q Consensus 179 c~C~ICLee~~~g~~~~~lpC~H~-FH~~CI~~WL~~~~sCPlCR~~l 225 (225)
..|+||++.+.. .+.+||+|. ||..|+.+| ..||+||.++
T Consensus 25 ~~C~iC~~~~~~---~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i 65 (74)
T 4ic3_A 25 KLCKICMDRNIA---IVFVPCGHLVTCKQCAEAV----DKCPMCYTVI 65 (74)
T ss_dssp TBCTTTSSSBCC---EEEETTCCBCCCHHHHTTC----SBCTTTCCBC
T ss_pred CCCCCCCCCCCC---EEEcCCCChhHHHHhhhcC----ccCCCcCcCc
Confidence 368999998753 467899999 999999999 8899999864
No 57
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.87 E-value=3.2e-10 Score=75.93 Aligned_cols=41 Identities=27% Similarity=0.649 Sum_probs=34.9
Q ss_pred ccccccccccccCceeEEeCcCCeecHHHHHHHhhcCCCCCCcCCCC
Q 041990 179 CLCAICLQEFVVGLQVTRLPCSHIFHGDCVLNWLTKSKSCPLCRSEL 225 (225)
Q Consensus 179 c~C~ICLee~~~g~~~~~lpC~H~FH~~CI~~WL~~~~sCPlCR~~l 225 (225)
-.|+||++.|..+ +.+||+|.||..||.+| ...||+||+++
T Consensus 7 ~~C~IC~~~~~~p---~~l~CgH~fC~~Ci~~~---~~~CP~Cr~~~ 47 (56)
T 1bor_A 7 LRCQQCQAEAKCP---KLLPCLHTLCSGCLEAS---GMQCPICQAPW 47 (56)
T ss_dssp SSCSSSCSSCBCC---SCSTTSCCSBTTTCSSS---SSSCSSCCSSS
T ss_pred CCceEeCCccCCe---EEcCCCCcccHHHHccC---CCCCCcCCcEe
Confidence 4689999999754 66899999999999884 67899999864
No 58
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.85 E-value=9.9e-10 Score=94.25 Aligned_cols=45 Identities=16% Similarity=0.138 Sum_probs=38.5
Q ss_pred cccccccccccccCceeEEeCcCCeecHHHHHHHhhcC-CCCCCcCCCC
Q 041990 178 QCLCAICLQEFVVGLQVTRLPCSHIFHGDCVLNWLTKS-KSCPLCRSEL 225 (225)
Q Consensus 178 ~c~C~ICLee~~~g~~~~~lpC~H~FH~~CI~~WL~~~-~sCPlCR~~l 225 (225)
.-.|+||++.|..+ +++||||+||..||.+|+..+ .+||+||.++
T Consensus 208 ~~~c~i~~~~~~dP---v~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~ 253 (281)
T 2c2l_A 208 YLCGKISFELMREP---CITPSGITYDRKDIEEHLQRVGHFNPVTRSPL 253 (281)
T ss_dssp TTBCTTTCSBCSSE---EECSSCCEEETTHHHHHHHHTCSSCTTTCCCC
T ss_pred ccCCcCcCCHhcCC---eECCCCCEECHHHHHHHHHHCCCCCcCCCCCC
Confidence 34699999999765 678999999999999999874 4599999875
No 59
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.83 E-value=1.6e-09 Score=87.71 Aligned_cols=46 Identities=26% Similarity=0.683 Sum_probs=38.7
Q ss_pred ccccccccccccccCceeEEeCcCCeecHHHHHHHhhcC-CCCCCcCCCC
Q 041990 177 QQCLCAICLQEFVVGLQVTRLPCSHIFHGDCVLNWLTKS-KSCPLCRSEL 225 (225)
Q Consensus 177 ~~c~C~ICLee~~~g~~~~~lpC~H~FH~~CI~~WL~~~-~sCPlCR~~l 225 (225)
+...|+||++.+..+ +.++|||+||..||.+|++.+ .+||+||.++
T Consensus 17 ~~~~C~IC~~~~~~p---v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 63 (170)
T 3hcs_A 17 SKYECPICLMALREA---VQTPCGHRFCKACIIKSIRDAGHKCPVDNEIL 63 (170)
T ss_dssp GGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBC
T ss_pred CCCCCCCCChhhcCc---EECCCCCHHHHHHHHHHHHhCCCCCCCCccCc
Confidence 344789999998754 558999999999999999874 4999999864
No 60
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.81 E-value=5.2e-10 Score=100.58 Aligned_cols=50 Identities=26% Similarity=0.683 Sum_probs=38.6
Q ss_pred cccccccccccccccCcee----E-EeCcCCeecHHHHHHHhhcC-----------CCCCCcCCCC
Q 041990 176 RQQCLCAICLQEFVVGLQV----T-RLPCSHIFHGDCVLNWLTKS-----------KSCPLCRSEL 225 (225)
Q Consensus 176 ~~~c~C~ICLee~~~g~~~----~-~lpC~H~FH~~CI~~WL~~~-----------~sCPlCR~~l 225 (225)
.++.+|+||++.+..+..+ . ..+|+|.||..||.+||++. ++||+||.+|
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pI 371 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKL 371 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEE
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcC
Confidence 3556899999999873322 1 23799999999999999752 4699999864
No 61
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.79 E-value=1.9e-09 Score=79.63 Aligned_cols=44 Identities=20% Similarity=0.541 Sum_probs=36.5
Q ss_pred cccccccccccccCceeEEeC-cCCeecHHHHHHHhhcC------CCCCC--cCCC
Q 041990 178 QCLCAICLQEFVVGLQVTRLP-CSHIFHGDCVLNWLTKS------KSCPL--CRSE 224 (225)
Q Consensus 178 ~c~C~ICLee~~~g~~~~~lp-C~H~FH~~CI~~WL~~~------~sCPl--CR~~ 224 (225)
.-.||||++.|..+ +.+| |||+|+..||.+|+..+ .+||+ |+..
T Consensus 7 ~~~CPI~~~~~~dP---V~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 7 GFTCPITKEEMKKP---VKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp CCBCTTTCSBCSSE---EEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred EeECcCcCchhcCC---EEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 34689999999754 6675 99999999999999864 48999 9843
No 62
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.71 E-value=4.7e-09 Score=74.12 Aligned_cols=39 Identities=28% Similarity=0.882 Sum_probs=32.5
Q ss_pred cccccccccccCceeEEeCcCCe-ecHHHHHHHhhcCCCCCCcCCCC
Q 041990 180 LCAICLQEFVVGLQVTRLPCSHI-FHGDCVLNWLTKSKSCPLCRSEL 225 (225)
Q Consensus 180 ~C~ICLee~~~g~~~~~lpC~H~-FH~~CI~~WL~~~~sCPlCR~~l 225 (225)
.|+||++.+.. .+.+||+|. ||..|+.+ ...||+||.++
T Consensus 27 ~C~IC~~~~~~---~~~~pCgH~~~C~~C~~~----~~~CP~Cr~~i 66 (75)
T 2ecg_A 27 LCKICMDRNIA---IVFVPCGHLVTCKQCAEA----VDKCPMCYTVI 66 (75)
T ss_dssp SCSSSCSSCCC---BCCSSSCCCCBCHHHHHH----CSBCTTTCCBC
T ss_pred CCCcCCCCCCC---EEEecCCCHHHHHHHhhC----CCCCccCCcee
Confidence 68999998754 466899999 99999964 47899999864
No 63
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.70 E-value=7.9e-09 Score=85.29 Aligned_cols=46 Identities=15% Similarity=0.131 Sum_probs=38.7
Q ss_pred ccccccccccccccCceeEEeCcCCeecHHHHHHHhhcC-CCCCCcCCCC
Q 041990 177 QQCLCAICLQEFVVGLQVTRLPCSHIFHGDCVLNWLTKS-KSCPLCRSEL 225 (225)
Q Consensus 177 ~~c~C~ICLee~~~g~~~~~lpC~H~FH~~CI~~WL~~~-~sCPlCR~~l 225 (225)
..-.||||++.|..+ +.+||||+|+..||.+|+..+ .+||+||.++
T Consensus 105 ~~f~CPI~~elm~DP---V~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l 151 (179)
T 2f42_A 105 DYLCGKISFELMREP---CITPSGITYDRKDIEEHLQRVGHFDPVTRSPL 151 (179)
T ss_dssp GGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBC
T ss_pred HhhcccCccccCCCC---eECCCCCEECHHHHHHHHHhCCCCCCCCcCCC
Confidence 334689999999755 677999999999999999874 4699999864
No 64
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.69 E-value=7.1e-09 Score=70.76 Aligned_cols=45 Identities=29% Similarity=0.684 Sum_probs=34.7
Q ss_pred cccccccccccccCceeEEeCcC--C---eecHHHHHHHhhc--CCCCCCcCCCC
Q 041990 178 QCLCAICLQEFVVGLQVTRLPCS--H---IFHGDCVLNWLTK--SKSCPLCRSEL 225 (225)
Q Consensus 178 ~c~C~ICLee~~~g~~~~~lpC~--H---~FH~~CI~~WL~~--~~sCPlCR~~l 225 (225)
...|.||+++. +.. ..+||. | .||..|+.+|+.. +.+||+||+++
T Consensus 6 ~~~CrIC~~~~--~~~-l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~ 57 (60)
T 1vyx_A 6 VPVCWICNEEL--GNE-RFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVY 57 (60)
T ss_dssp CCEETTTTEEC--SCC-CCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBC
T ss_pred CCEeEEeecCC--CCc-eecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCee
Confidence 34689999873 333 357964 4 9999999999975 67899999864
No 65
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.58 E-value=1.3e-08 Score=72.97 Aligned_cols=39 Identities=38% Similarity=0.922 Sum_probs=33.0
Q ss_pred cccccccccccCceeEEeCcCCe-ecHHHHHHHhhcCCCCCCcCCCC
Q 041990 180 LCAICLQEFVVGLQVTRLPCSHI-FHGDCVLNWLTKSKSCPLCRSEL 225 (225)
Q Consensus 180 ~C~ICLee~~~g~~~~~lpC~H~-FH~~CI~~WL~~~~sCPlCR~~l 225 (225)
.|+||++.+. .++.+||||. ||..|+.+| ..||+||.++
T Consensus 20 ~C~IC~~~~~---~~v~~pCgH~~~C~~C~~~~----~~CP~Cr~~i 59 (79)
T 2yho_A 20 LCMVCCEEEI---NSTFCPCGHTVCCESCAAQL----QSCPVCRSRV 59 (79)
T ss_dssp BCTTTSSSBC---CEEEETTCBCCBCHHHHTTC----SBCTTTCCBC
T ss_pred EeEEeCcccC---cEEEECCCCHHHHHHHHHhc----CcCCCCCchh
Confidence 6899998764 3577899999 999999887 3999999864
No 66
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.58 E-value=2.5e-08 Score=73.19 Aligned_cols=46 Identities=30% Similarity=0.645 Sum_probs=37.1
Q ss_pred ccccccccccccCceeEEeCcCCeecHHHHHHHhhc--------CCCCCC--cCCC
Q 041990 179 CLCAICLQEFVVGLQVTRLPCSHIFHGDCVLNWLTK--------SKSCPL--CRSE 224 (225)
Q Consensus 179 c~C~ICLee~~~g~~~~~lpC~H~FH~~CI~~WL~~--------~~sCPl--CR~~ 224 (225)
-.|+||++.+..+......+|+|.||..|+.++++. .-.||. ||..
T Consensus 6 ~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 6 SGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp CCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred cCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 468999999876655444589999999999999974 237999 9975
No 67
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.55 E-value=2.4e-08 Score=68.24 Aligned_cols=43 Identities=19% Similarity=0.234 Sum_probs=38.2
Q ss_pred cccccccccccCceeEEe-CcCCeecHHHHHHHhhcCCCCCCcCCCC
Q 041990 180 LCAICLQEFVVGLQVTRL-PCSHIFHGDCVLNWLTKSKSCPLCRSEL 225 (225)
Q Consensus 180 ~C~ICLee~~~g~~~~~l-pC~H~FH~~CI~~WL~~~~sCPlCR~~l 225 (225)
.|+||++.+..+ +.+ +|||+|.+.||.+||+++.+||+.|.++
T Consensus 5 ~CpIs~~~m~dP---V~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L 48 (61)
T 2bay_A 5 LCAISGKVPRRP---VLSPKSRTIFEKSLLEQYVKDTGNDPITNEPL 48 (61)
T ss_dssp CCTTTCSCCSSE---EEETTTTEEEEHHHHHHHHHHHSBCTTTCCBC
T ss_pred EecCCCCCCCCC---EEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCC
Confidence 589999999754 666 8999999999999999988999999865
No 68
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.54 E-value=3.5e-08 Score=68.70 Aligned_cols=41 Identities=32% Similarity=0.737 Sum_probs=33.6
Q ss_pred cccccccccccccCceeEEeCcCCe-ecHHHHHHHhhcCCCCCCcCCCC
Q 041990 178 QCLCAICLQEFVVGLQVTRLPCSHI-FHGDCVLNWLTKSKSCPLCRSEL 225 (225)
Q Consensus 178 ~c~C~ICLee~~~g~~~~~lpC~H~-FH~~CI~~WL~~~~sCPlCR~~l 225 (225)
...|.||++... .++.+||+|. ||..|+.. ...||+||.++
T Consensus 15 ~~~C~IC~~~~~---~~v~~pCgH~~~C~~C~~~----~~~CP~CR~~i 56 (68)
T 2ea5_A 15 SKDCVVCQNGTV---NWVLLPCRHTCLCDGCVKY----FQQCPMCRQFV 56 (68)
T ss_dssp SSCCSSSSSSCC---CCEETTTTBCCSCTTHHHH----CSSCTTTCCCC
T ss_pred CCCCCCcCcCCC---CEEEECCCChhhhHHHHhc----CCCCCCCCcch
Confidence 346899998764 4577899999 99999984 57899999875
No 69
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.42 E-value=7.6e-08 Score=83.65 Aligned_cols=44 Identities=25% Similarity=0.631 Sum_probs=36.7
Q ss_pred ccccccccccccCceeEEeCcCCeecHHHHHHHhhcC--CCCCC--cCCC
Q 041990 179 CLCAICLQEFVVGLQVTRLPCSHIFHGDCVLNWLTKS--KSCPL--CRSE 224 (225)
Q Consensus 179 c~C~ICLee~~~g~~~~~lpC~H~FH~~CI~~WL~~~--~sCPl--CR~~ 224 (225)
-.||||++.|..+ ++.+.|||+|++.||.+|++.+ .+||+ ||..
T Consensus 182 l~CPIcl~~f~DP--Vts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~ 229 (267)
T 3htk_C 182 LTCPITCKPYEAP--LISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQV 229 (267)
T ss_dssp SBCTTTSSBCSSE--EEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCE
T ss_pred eECcCccCcccCC--eeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCc
Confidence 4799999999744 4445999999999999999864 47999 9975
No 70
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.41 E-value=5.4e-08 Score=87.82 Aligned_cols=41 Identities=29% Similarity=0.894 Sum_probs=35.0
Q ss_pred cccccccccccccCceeEEeCcCCe-ecHHHHHHHhhcCCCCCCcCCCC
Q 041990 178 QCLCAICLQEFVVGLQVTRLPCSHI-FHGDCVLNWLTKSKSCPLCRSEL 225 (225)
Q Consensus 178 ~c~C~ICLee~~~g~~~~~lpC~H~-FH~~CI~~WL~~~~sCPlCR~~l 225 (225)
...|+||++.+.. .+.+||||. ||..|+.+| ..||+||.++
T Consensus 295 ~~~C~IC~~~~~~---~v~lpCgH~~fC~~C~~~~----~~CP~CR~~i 336 (345)
T 3t6p_A 295 ERTCKVCMDKEVS---VVFIPCGHLVVCQECAPSL----RKCPICRGII 336 (345)
T ss_dssp TCBCTTTSSSBCC---EEEETTCCEEECTTTGGGC----SBCTTTCCBC
T ss_pred CCCCCccCCcCCc---eEEcCCCChhHhHHHHhcC----CcCCCCCCCc
Confidence 3478999998753 477899999 999999988 7899999864
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.33 E-value=4.3e-07 Score=67.83 Aligned_cols=43 Identities=30% Similarity=0.675 Sum_probs=35.0
Q ss_pred ccccccccccCceeEEeCcCCeecHHHHHHHhhc-CCCCCCcCCCC
Q 041990 181 CAICLQEFVVGLQVTRLPCSHIFHGDCVLNWLTK-SKSCPLCRSEL 225 (225)
Q Consensus 181 C~ICLee~~~g~~~~~lpC~H~FH~~CI~~WL~~-~~sCPlCR~~l 225 (225)
|++|--.+. ...+..||+|+||.+|+..|.++ .++||.||.++
T Consensus 4 C~~C~~Pi~--iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V 47 (101)
T 3vk6_A 4 CDKCGLPIK--VYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPV 47 (101)
T ss_dssp CTTTCSBCS--EEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBC
T ss_pred cCccCCCeE--EEeeeccccccHHHHHHHHHHhccCCCCcCcCCee
Confidence 788865544 45677799999999999999855 78999999875
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.90 E-value=4.5e-06 Score=71.56 Aligned_cols=46 Identities=24% Similarity=0.604 Sum_probs=37.1
Q ss_pred ccccccccccccccCceeEEeCcCCeecHHHHHHHhhcCC--CCCCcCCC
Q 041990 177 QQCLCAICLQEFVVGLQVTRLPCSHIFHGDCVLNWLTKSK--SCPLCRSE 224 (225)
Q Consensus 177 ~~c~C~ICLee~~~g~~~~~lpC~H~FH~~CI~~WL~~~~--sCPlCR~~ 224 (225)
....|+||.+....|. +.-.|+|.||..|+.+|++++. .||.|+.+
T Consensus 179 ~i~~C~iC~~iv~~g~--~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~ 226 (238)
T 3nw0_A 179 AVKICNICHSLLIQGQ--SCETCGIRMHLPCVAKYFQSNAEPRCPHCNDY 226 (238)
T ss_dssp TCCBCTTTCSBCSSCE--ECSSSCCEECHHHHHHHTTTCSSCBCTTTCCB
T ss_pred CCCcCcchhhHHhCCc--ccCccChHHHHHHHHHHHHhCCCCCCCCCCCC
Confidence 3567999999988662 2224999999999999998754 89999874
No 73
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=94.54 E-value=0.018 Score=41.79 Aligned_cols=34 Identities=21% Similarity=0.434 Sum_probs=25.4
Q ss_pred ccccccccccccCceeEEeCcCCeecHHHHHH-Hh
Q 041990 179 CLCAICLQEFVVGLQVTRLPCSHIFHGDCVLN-WL 212 (225)
Q Consensus 179 c~C~ICLee~~~g~~~~~lpC~H~FH~~CI~~-WL 212 (225)
-.|+||++.+........++|+|.||..|+.. |-
T Consensus 4 ~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~ 38 (101)
T 2jun_A 4 VLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHP 38 (101)
T ss_dssp CBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSC
T ss_pred CCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhc
Confidence 36899998754333334489999999999998 53
No 74
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=92.45 E-value=0.09 Score=35.92 Aligned_cols=43 Identities=21% Similarity=0.437 Sum_probs=31.0
Q ss_pred ccccccccccccCceeEEeCcCCeecHHHHHHHhhcC----CCCCCcCCC
Q 041990 179 CLCAICLQEFVVGLQVTRLPCSHIFHGDCVLNWLTKS----KSCPLCRSE 224 (225)
Q Consensus 179 c~C~ICLee~~~g~~~~~lpC~H~FH~~CI~~WL~~~----~sCPlCR~~ 224 (225)
..|.||.+. ++-+..-.|...||..|+...|... =.||.|+..
T Consensus 13 ~~C~vC~~~---~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 13 ARCGVCGDG---TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp CCCTTTSCC---TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCcCCCCCC---CeEEECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 468999742 3333333799999999999888653 379999753
No 75
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=90.78 E-value=0.046 Score=36.70 Aligned_cols=49 Identities=24% Similarity=0.513 Sum_probs=33.1
Q ss_pred cccccccccccccccCc-eeEEeCcCCeecHHHHHHHhh-----cCCCCCCcCCC
Q 041990 176 RQQCLCAICLQEFVVGL-QVTRLPCSHIFHGDCVLNWLT-----KSKSCPLCRSE 224 (225)
Q Consensus 176 ~~~c~C~ICLee~~~g~-~~~~lpC~H~FH~~CI~~WL~-----~~~sCPlCR~~ 224 (225)
.+...|+||...+..+. .+..-.|...||..|+.--.. ....||.|+.+
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 34456899998875443 333347999999999865332 24579999753
No 76
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=90.44 E-value=0.12 Score=37.90 Aligned_cols=42 Identities=29% Similarity=0.661 Sum_probs=33.9
Q ss_pred ccccccccccccCceeEEeCc-CCeecHHHHHHHhhcCCCCCCcCCCC
Q 041990 179 CLCAICLQEFVVGLQVTRLPC-SHIFHGDCVLNWLTKSKSCPLCRSEL 225 (225)
Q Consensus 179 c~C~ICLee~~~g~~~~~lpC-~H~FH~~CI~~WL~~~~sCPlCR~~l 225 (225)
.-|-.|+.+.+ ....| .|..|..|+...|..+..||+|..+|
T Consensus 29 ~nCKsCWf~~k-----~LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pL 71 (99)
T 2ko5_A 29 QFCKSCWFENK-----GLVECNNHYLCLNCLTLLLSVSNRCPICKMPL 71 (99)
T ss_dssp CCCCSSCSCCS-----SEEECSSCEEEHHHHHHTCSSSSEETTTTEEC
T ss_pred ccChhhccccC-----CeeeecchhhHHHHHHHHHhhccCCcccCCcC
Confidence 35789997654 23456 69999999999999999999998764
No 77
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=90.16 E-value=0.16 Score=36.47 Aligned_cols=31 Identities=19% Similarity=0.618 Sum_probs=21.2
Q ss_pred cccccccccccCceeEEeCcCCeecHHHHHHH
Q 041990 180 LCAICLQEFVVGLQVTRLPCSHIFHGDCVLNW 211 (225)
Q Consensus 180 ~C~ICLee~~~g~~~~~lpC~H~FH~~CI~~W 211 (225)
.|.||- .+..+.....--|+-+||..|+.+-
T Consensus 17 ~C~VC~-~~t~~~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 17 MCDVCE-VWTAESLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCTTTC-CCCSSCCSSCSSSSSCCCHHHHHHH
T ss_pred ccCccc-cccccceeccccccccccHhhcccc
Confidence 579994 3444433222348999999999996
No 78
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=86.21 E-value=0.31 Score=31.36 Aligned_cols=45 Identities=20% Similarity=0.301 Sum_probs=30.6
Q ss_pred cccccccccccccCcee-EEe-CcCCeecHHHHHHHh----hcCCCCCCcC
Q 041990 178 QCLCAICLQEFVVGLQV-TRL-PCSHIFHGDCVLNWL----TKSKSCPLCR 222 (225)
Q Consensus 178 ~c~C~ICLee~~~g~~~-~~l-pC~H~FH~~CI~~WL----~~~~sCPlCR 222 (225)
.|.|.||...+..+... ..- .|.-.||..|+.--. .....||.|+
T Consensus 2 ~c~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 2 VCAAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp CCSCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cccCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 36789999888655433 333 589999999975322 2466899996
No 79
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=84.17 E-value=0.42 Score=32.87 Aligned_cols=46 Identities=24% Similarity=0.411 Sum_probs=30.9
Q ss_pred ccccccccccccccCce-eEEeCcCCeecHHHHHHHhhc----CCCCCCcCC
Q 041990 177 QQCLCAICLQEFVVGLQ-VTRLPCSHIFHGDCVLNWLTK----SKSCPLCRS 223 (225)
Q Consensus 177 ~~c~C~ICLee~~~g~~-~~~lpC~H~FH~~CI~~WL~~----~~sCPlCR~ 223 (225)
+...|+||..... +.. +..=.|.-.||..|+..-... .-.||.|+.
T Consensus 17 ~~~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~ 67 (75)
T 2k16_A 17 QIWICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCAN 67 (75)
T ss_dssp EEECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHH
T ss_pred CCcCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccC
Confidence 3346899987643 332 233379999999999765432 346999975
No 80
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=83.86 E-value=0.78 Score=46.22 Aligned_cols=43 Identities=19% Similarity=0.158 Sum_probs=37.5
Q ss_pred cccccccccccCceeEEeCcC-CeecHHHHHHHhhcCCCCCCcCCCC
Q 041990 180 LCAICLQEFVVGLQVTRLPCS-HIFHGDCVLNWLTKSKSCPLCRSEL 225 (225)
Q Consensus 180 ~C~ICLee~~~g~~~~~lpC~-H~FH~~CI~~WL~~~~sCPlCR~~l 225 (225)
.|||=++.+..+ +.+|-| ++|-+.+|.+||..+.+||+=|.++
T Consensus 893 ~cPIs~~lM~DP---VilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L 936 (968)
T 3m62_A 893 LDPLMYTIMKDP---VILPASKMNIDRSTIKAHLLSDSTDPFNRMPL 936 (968)
T ss_dssp BCTTTCSBCSSE---EECTTTCCEEEHHHHHHHHTTCCBCTTTCCBC
T ss_pred CCcchhhHHhCC---eEcCCCCEEECHHHHHHHHhcCCCCCCCCCCC
Confidence 589999998765 778987 6999999999999999999987764
No 81
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=83.85 E-value=0.61 Score=30.97 Aligned_cols=42 Identities=29% Similarity=0.590 Sum_probs=29.5
Q ss_pred ccccccccccccCceeEEeCcCCeecHHHHHHHhhc----CCCCCCcCC
Q 041990 179 CLCAICLQEFVVGLQVTRLPCSHIFHGDCVLNWLTK----SKSCPLCRS 223 (225)
Q Consensus 179 c~C~ICLee~~~g~~~~~lpC~H~FH~~CI~~WL~~----~~sCPlCR~ 223 (225)
..|.||... +.-+..-.|...||..|+..=+.. .-.||.|+.
T Consensus 12 ~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 12 DYCEVCQQG---GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp SSCTTTSCC---SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCccCCCC---CcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 368999862 333333379999999999875543 336999976
No 82
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=83.26 E-value=0.7 Score=29.26 Aligned_cols=45 Identities=22% Similarity=0.445 Sum_probs=28.8
Q ss_pred cccccccccccCceeEEeCcCCeecHHHHHHHhhc----CCCCCCcCCC
Q 041990 180 LCAICLQEFVVGLQVTRLPCSHIFHGDCVLNWLTK----SKSCPLCRSE 224 (225)
Q Consensus 180 ~C~ICLee~~~g~~~~~lpC~H~FH~~CI~~WL~~----~~sCPlCR~~ 224 (225)
.|.||...-..+.-+..-.|...||..|+..=+.. .-.||.|+..
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~~ 50 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQPA 50 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSCC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCcccc
Confidence 47889764322222333379999999999754433 2259999763
No 83
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=76.85 E-value=0.26 Score=32.17 Aligned_cols=44 Identities=27% Similarity=0.659 Sum_probs=29.6
Q ss_pred ccccccccccccccCceeEEeCcCCeecHHHHHHHhhc----CCCCCCcCC
Q 041990 177 QQCLCAICLQEFVVGLQVTRLPCSHIFHGDCVLNWLTK----SKSCPLCRS 223 (225)
Q Consensus 177 ~~c~C~ICLee~~~g~~~~~lpC~H~FH~~CI~~WL~~----~~sCPlCR~ 223 (225)
....|.||... +.-+..-.|...||..|+..=|.. .-.||.|+.
T Consensus 8 ~~~~C~vC~~~---g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 8 HEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SCCSCSSSCCS---SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCccCCCC---CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 33468999863 333333379999999999865543 225998875
No 84
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=75.04 E-value=2.3 Score=28.60 Aligned_cols=34 Identities=24% Similarity=0.394 Sum_probs=23.8
Q ss_pred cccccccccccccccCcee-EEe-CcCCeecHHHHH
Q 041990 176 RQQCLCAICLQEFVVGLQV-TRL-PCSHIFHGDCVL 209 (225)
Q Consensus 176 ~~~c~C~ICLee~~~g~~~-~~l-pC~H~FH~~CI~ 209 (225)
.....|++|...+..+... ..- .|.-.||..|+.
T Consensus 6 ~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvg 41 (65)
T 2vpb_A 6 DPVYPCGICTNEVNDDQDAILCEASCQKWFHRICTG 41 (65)
T ss_dssp ---CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHT
T ss_pred CCcCcCccCCCccCCCCCeEecccCccccCchhccC
Confidence 3445789999988665443 334 799999999984
No 85
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=74.96 E-value=1 Score=32.77 Aligned_cols=43 Identities=26% Similarity=0.352 Sum_probs=28.5
Q ss_pred cccccccccccCceeEEeCcCCeecHHHHHHHhhc---CCCCCCcCC
Q 041990 180 LCAICLQEFVVGLQVTRLPCSHIFHGDCVLNWLTK---SKSCPLCRS 223 (225)
Q Consensus 180 ~C~ICLee~~~g~~~~~lpC~H~FH~~CI~~WL~~---~~sCPlCR~ 223 (225)
.| ||-.....+..+..-.|.-.||..|+..=+.. .-.||.|+.
T Consensus 30 rC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 30 RC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp CC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred Ee-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 45 77665544544444479999999998653322 347999974
No 86
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=74.82 E-value=0.59 Score=31.06 Aligned_cols=43 Identities=23% Similarity=0.515 Sum_probs=29.2
Q ss_pred ccccccccccccCceeEEeCcCCeecHHHHHHHhhc----CCCCCCcCCC
Q 041990 179 CLCAICLQEFVVGLQVTRLPCSHIFHGDCVLNWLTK----SKSCPLCRSE 224 (225)
Q Consensus 179 c~C~ICLee~~~g~~~~~lpC~H~FH~~CI~~WL~~----~~sCPlCR~~ 224 (225)
..|.||.. .+.-+..-.|...||..|+..-+.. .-.||.|+..
T Consensus 10 ~~C~vC~~---~g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 10 EFCRVCKD---GGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp SSCTTTCC---CSSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred CcCCCCCC---CCCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 35899975 2333333369999999999865543 2369999864
No 87
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=74.81 E-value=1.4 Score=29.39 Aligned_cols=42 Identities=26% Similarity=0.468 Sum_probs=29.8
Q ss_pred cccccccccccCceeEEeCcCCeecHHHHHHHhhcCCCCCCc
Q 041990 180 LCAICLQEFVVGLQVTRLPCSHIFHGDCVLNWLTKSKSCPLC 221 (225)
Q Consensus 180 ~C~ICLee~~~g~~~~~lpC~H~FH~~CI~~WL~~~~sCPlC 221 (225)
.|--|...|.....-..-.|++.||.+|=.---++-++||-|
T Consensus 17 ~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 17 FCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp EETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred cccccCcccCCCccEECCccCcCcccchhHHHHhhccCCcCC
Confidence 478998888543222233599999999965545667889988
No 88
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=74.13 E-value=1.6 Score=30.30 Aligned_cols=44 Identities=30% Similarity=0.615 Sum_probs=28.9
Q ss_pred cccccccccccC-ceeEEeCcCCeecHHHHHHHhh-----cCCCCCCcCCC
Q 041990 180 LCAICLQEFVVG-LQVTRLPCSHIFHGDCVLNWLT-----KSKSCPLCRSE 224 (225)
Q Consensus 180 ~C~ICLee~~~g-~~~~~lpC~H~FH~~CI~~WL~-----~~~sCPlCR~~ 224 (225)
.| ||...+..+ ..+..-.|...||..|+.---. ....||.|+..
T Consensus 14 ~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~ 63 (79)
T 1wep_A 14 YC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAV 63 (79)
T ss_dssp CS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTT
T ss_pred EE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCcccc
Confidence 35 888776433 3334447999999999853221 24579999863
No 89
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=71.66 E-value=1.3 Score=30.23 Aligned_cols=46 Identities=28% Similarity=0.535 Sum_probs=29.3
Q ss_pred ccccccccccccCceeEEeCcCCeecHHHHHHHhhc-----CCCCCCcCCC
Q 041990 179 CLCAICLQEFVVGLQVTRLPCSHIFHGDCVLNWLTK-----SKSCPLCRSE 224 (225)
Q Consensus 179 c~C~ICLee~~~g~~~~~lpC~H~FH~~CI~~WL~~-----~~sCPlCR~~ 224 (225)
|.|.||...-..+.-+..=.|...||..|+..=|.. .=.||.|+.+
T Consensus 19 C~C~~C~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~~ 69 (70)
T 3asl_A 19 CACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 69 (70)
T ss_dssp TSBTTTCCCSCGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSCC
T ss_pred CCCcCCCCcCCCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccCc
Confidence 467888754222222222269999999999854443 2369999864
No 90
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=71.60 E-value=5.5 Score=31.04 Aligned_cols=42 Identities=24% Similarity=0.543 Sum_probs=29.8
Q ss_pred cccccccccccccCceeEEe-CcCCeecHHHHHHHhh-----------cCCCCCCcCC
Q 041990 178 QCLCAICLQEFVVGLQVTRL-PCSHIFHGDCVLNWLT-----------KSKSCPLCRS 223 (225)
Q Consensus 178 ~c~C~ICLee~~~g~~~~~l-pC~H~FH~~CI~~WL~-----------~~~sCPlCR~ 223 (225)
+..|.||-+ |..+... .|..+||..||.+-+. ..=.||+|+.
T Consensus 63 ~d~C~vC~~----GG~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 63 DEQCRWCAE----GGNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp BCSCSSSCC----CSSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCeecccCC----CCcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 346899975 2333333 7999999999997663 1236999984
No 91
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=71.44 E-value=0.91 Score=31.27 Aligned_cols=43 Identities=33% Similarity=0.593 Sum_probs=28.8
Q ss_pred cccccccccccCceeEEeCcCCeecHHHHHHHh---------hcCCCCCCcCC
Q 041990 180 LCAICLQEFVVGLQVTRLPCSHIFHGDCVLNWL---------TKSKSCPLCRS 223 (225)
Q Consensus 180 ~C~ICLee~~~g~~~~~lpC~H~FH~~CI~~WL---------~~~~sCPlCR~ 223 (225)
.| ||......+..+..-.|...||..|+.--. .....||.|+.
T Consensus 18 ~C-~C~~~~~~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~ 69 (76)
T 1wem_A 18 YC-ICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTI 69 (76)
T ss_dssp CS-TTCCCCCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHH
T ss_pred EE-ECCCccCCCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcC
Confidence 45 888776533334444799999999984221 24668999974
No 92
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=71.26 E-value=1 Score=31.56 Aligned_cols=46 Identities=28% Similarity=0.507 Sum_probs=29.8
Q ss_pred cccccccccccccCceeEEeCcCCeecHHHHHHHhhc----C-CCCCCcCC
Q 041990 178 QCLCAICLQEFVVGLQVTRLPCSHIFHGDCVLNWLTK----S-KSCPLCRS 223 (225)
Q Consensus 178 ~c~C~ICLee~~~g~~~~~lpC~H~FH~~CI~~WL~~----~-~sCPlCR~ 223 (225)
.|.|.||-..-..+..+..=.|...||..|+..-|.. . =.||.|+.
T Consensus 26 ~C~C~vC~~~~d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 26 VCACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp TTSBTTTCCCSCGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred CCcCCccCCCCCCcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 3467888765333222222269999999999876654 2 37999986
No 93
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=69.48 E-value=5.3 Score=29.41 Aligned_cols=30 Identities=20% Similarity=0.452 Sum_probs=20.2
Q ss_pred cccccccccc-----cC-ceeEEeCcCCeecHHHHH
Q 041990 180 LCAICLQEFV-----VG-LQVTRLPCSHIFHGDCVL 209 (225)
Q Consensus 180 ~C~ICLee~~-----~g-~~~~~lpC~H~FH~~CI~ 209 (225)
.|.+|+..-. .+ +-+....|+..||..|+.
T Consensus 7 ~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~ 42 (112)
T 3v43_A 7 ICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLK 42 (112)
T ss_dssp SBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHT
T ss_pred cccccCCchhhCcCCCchhceEhhhcCCCCCCchhc
Confidence 5799987521 11 223334799999999995
No 94
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=68.26 E-value=1.6 Score=32.04 Aligned_cols=44 Identities=27% Similarity=0.486 Sum_probs=27.8
Q ss_pred ccccccccccccCceeEEeCcCCeecHHHHHHHhhc----CCCCCCcC
Q 041990 179 CLCAICLQEFVVGLQVTRLPCSHIFHGDCVLNWLTK----SKSCPLCR 222 (225)
Q Consensus 179 c~C~ICLee~~~g~~~~~lpC~H~FH~~CI~~WL~~----~~sCPlCR 222 (225)
..|.||.+.=....-+..-.|...||..|+...+.. .-.||.|+
T Consensus 8 ~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 8 ANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp SCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 358999764211112344479999999999887642 22466553
No 95
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=67.61 E-value=1.2 Score=30.96 Aligned_cols=44 Identities=23% Similarity=0.412 Sum_probs=29.5
Q ss_pred ccccccccccccCceeEEe--CcCCeecHHHHHHHhh---------cCCCCCCcCC
Q 041990 179 CLCAICLQEFVVGLQVTRL--PCSHIFHGDCVLNWLT---------KSKSCPLCRS 223 (225)
Q Consensus 179 c~C~ICLee~~~g~~~~~l--pC~H~FH~~CI~~WL~---------~~~sCPlCR~ 223 (225)
..| ||-.....+..+..= .|...||..|+.---. ....||.|+.
T Consensus 17 ~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~ 71 (78)
T 1wew_A 17 VRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRL 71 (78)
T ss_dssp CCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHH
T ss_pred EEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCc
Confidence 356 788765555445544 6999999999853211 2557999975
No 96
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=66.98 E-value=1.7 Score=30.37 Aligned_cols=45 Identities=27% Similarity=0.571 Sum_probs=29.6
Q ss_pred ccccccccccccCceeEEeCcCCeecHHHHHHHhhc-----CCCCCCcCC
Q 041990 179 CLCAICLQEFVVGLQVTRLPCSHIFHGDCVLNWLTK-----SKSCPLCRS 223 (225)
Q Consensus 179 c~C~ICLee~~~g~~~~~lpC~H~FH~~CI~~WL~~-----~~sCPlCR~ 223 (225)
+.|.||...-..+.-+..=.|...||..|+..=|.. .=.||.|+.
T Consensus 27 c~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 27 CSCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSCSSSCCCCCSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCcCcCCcCCCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 478999864323333333379999999999854433 236999975
No 97
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=65.58 E-value=2.6 Score=30.43 Aligned_cols=44 Identities=36% Similarity=0.623 Sum_probs=27.3
Q ss_pred ccccccccccccccCceeEEeC--cC-CeecHHHHHHHhhc----CCCCCCcCCC
Q 041990 177 QQCLCAICLQEFVVGLQVTRLP--CS-HIFHGDCVLNWLTK----SKSCPLCRSE 224 (225)
Q Consensus 177 ~~c~C~ICLee~~~g~~~~~lp--C~-H~FH~~CI~~WL~~----~~sCPlCR~~ 224 (225)
+...| ||..... |..+..=. |. ..||..|+. |.. .-.||.|+..
T Consensus 35 e~~yC-iC~~~~~-g~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~ 85 (91)
T 1weu_A 35 EPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQE 85 (91)
T ss_dssp CCBCS-TTCCBCC-SCCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCC
T ss_pred CCcEE-ECCCCCC-CCEeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCc
Confidence 33456 9987542 43222224 65 689999996 433 3479999864
No 98
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=64.26 E-value=3.7 Score=30.17 Aligned_cols=45 Identities=22% Similarity=0.429 Sum_probs=30.7
Q ss_pred ccccccccccccCceeEEe--CcCCeecHHHHHHHhh----------cCCCCCCcCC
Q 041990 179 CLCAICLQEFVVGLQVTRL--PCSHIFHGDCVLNWLT----------KSKSCPLCRS 223 (225)
Q Consensus 179 c~C~ICLee~~~g~~~~~l--pC~H~FH~~CI~~WL~----------~~~sCPlCR~ 223 (225)
+.|+||...+........- .|.-.||..|+.---. ..-.||.|+.
T Consensus 4 ~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~ 60 (105)
T 2xb1_A 4 YPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLK 60 (105)
T ss_dssp CBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHH
T ss_pred CCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccC
Confidence 4689999987554443333 6999999999852210 2447999975
No 99
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=64.18 E-value=2.6 Score=30.27 Aligned_cols=42 Identities=36% Similarity=0.705 Sum_probs=29.1
Q ss_pred ccccccccccccCceeEEeCcCCeecHHHHHHHhhc----CCCCCCcCC
Q 041990 179 CLCAICLQEFVVGLQVTRLPCSHIFHGDCVLNWLTK----SKSCPLCRS 223 (225)
Q Consensus 179 c~C~ICLee~~~g~~~~~lpC~H~FH~~CI~~WL~~----~~sCPlCR~ 223 (225)
..|.||... |.-+..-.|.-.||..|+.+=|.. .-.||.|+.
T Consensus 26 ~~C~vC~~~---g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~ 71 (88)
T 1fp0_A 26 TICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHV 71 (88)
T ss_dssp SCCSSSCSS---SCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCC
T ss_pred CcCcCcCCC---CCEEECCCCCCceecccCCCCCCCCcCCCcCCccccC
Confidence 468999853 332222379999999999776544 226999985
No 100
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=64.15 E-value=2.5 Score=31.23 Aligned_cols=45 Identities=24% Similarity=0.435 Sum_probs=29.5
Q ss_pred cccccccccccCcee-EEeCcCCeecHHHHHHHhhc----CCCCCCcCCC
Q 041990 180 LCAICLQEFVVGLQV-TRLPCSHIFHGDCVLNWLTK----SKSCPLCRSE 224 (225)
Q Consensus 180 ~C~ICLee~~~g~~~-~~lpC~H~FH~~CI~~WL~~----~~sCPlCR~~ 224 (225)
.|.||...-..+..+ ..-.|...||..|+..-|.. .=.||.||.+
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~k 112 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRPR 112 (112)
T ss_dssp CBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSCC
T ss_pred ccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCCc
Confidence 588997642222222 22369999999999765554 2379999853
No 101
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=63.09 E-value=4.1 Score=27.84 Aligned_cols=42 Identities=38% Similarity=0.641 Sum_probs=26.4
Q ss_pred ccccccccccccCceeEEeC--cC-CeecHHHHHHHhhc----CCCCCCcCCC
Q 041990 179 CLCAICLQEFVVGLQVTRLP--CS-HIFHGDCVLNWLTK----SKSCPLCRSE 224 (225)
Q Consensus 179 c~C~ICLee~~~g~~~~~lp--C~-H~FH~~CI~~WL~~----~~sCPlCR~~ 224 (225)
..| ||-... .|..+..=. |. ..||..|+. |.. .-.||.|+..
T Consensus 17 ~~C-~C~~~~-~g~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~ 65 (71)
T 1wen_A 17 TYC-LCHQVS-YGEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQE 65 (71)
T ss_dssp CCS-TTCCCS-CSSEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSC
T ss_pred CEE-ECCCCC-CCCEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCcc
Confidence 346 897753 243222224 66 699999997 443 3479999864
No 102
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=61.39 E-value=2 Score=36.13 Aligned_cols=47 Identities=28% Similarity=0.513 Sum_probs=27.2
Q ss_pred cccccccccccccCceeEEeCcCCeecHHHHHHHhhc-----CCCCCCcCCC
Q 041990 178 QCLCAICLQEFVVGLQVTRLPCSHIFHGDCVLNWLTK-----SKSCPLCRSE 224 (225)
Q Consensus 178 ~c~C~ICLee~~~g~~~~~lpC~H~FH~~CI~~WL~~-----~~sCPlCR~~ 224 (225)
.|.|.+|...=..+.-+..=.|...||..|+..=|.. .=.||.|+..
T Consensus 174 ~c~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~~ 225 (226)
T 3ask_A 174 VCACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 225 (226)
T ss_dssp TTSCSSSCCCCC--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC--
T ss_pred CCCCcCCCCCCCCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcCc
Confidence 4568999764222222333379999999999854443 2269999864
No 103
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=60.39 E-value=4.1 Score=26.91 Aligned_cols=47 Identities=21% Similarity=0.439 Sum_probs=30.0
Q ss_pred cccccccccccccc--CceeEEeCcCCeecHHHHHHHhh-------cCCCCCCcCC
Q 041990 177 QQCLCAICLQEFVV--GLQVTRLPCSHIFHGDCVLNWLT-------KSKSCPLCRS 223 (225)
Q Consensus 177 ~~c~C~ICLee~~~--g~~~~~lpC~H~FH~~CI~~WL~-------~~~sCPlCR~ 223 (225)
....|.||...... +.-+..-.|...||..|+..=+. ..-.||.|+.
T Consensus 5 ~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~ 60 (66)
T 2yt5_A 5 SSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVF 60 (66)
T ss_dssp CCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcC
Confidence 33468999876432 22222237999999999876432 2336888864
No 104
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=58.91 E-value=1.6 Score=29.68 Aligned_cols=43 Identities=21% Similarity=0.481 Sum_probs=28.3
Q ss_pred cccccccccccCceeEEeCcCCeecHHHHHHHhh---cCCCCCCcCC
Q 041990 180 LCAICLQEFVVGLQVTRLPCSHIFHGDCVLNWLT---KSKSCPLCRS 223 (225)
Q Consensus 180 ~C~ICLee~~~g~~~~~lpC~H~FH~~CI~~WL~---~~~sCPlCR~ 223 (225)
.| ||-.....+..+..-.|...||..|+.---. ....||.|+.
T Consensus 21 ~C-iC~~~~~~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 21 TC-FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp CS-TTCCCCTTCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred Ee-ECCCcCCCCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 56 8877654323344447999999999864321 2457999975
No 105
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=58.80 E-value=1.2 Score=29.25 Aligned_cols=41 Identities=29% Similarity=0.710 Sum_probs=27.9
Q ss_pred cccccccccccCceeEEeCcCCeecHHHHHHHhhc----CCCCCCcCC
Q 041990 180 LCAICLQEFVVGLQVTRLPCSHIFHGDCVLNWLTK----SKSCPLCRS 223 (225)
Q Consensus 180 ~C~ICLee~~~g~~~~~lpC~H~FH~~CI~~WL~~----~~sCPlCR~ 223 (225)
.|.||... |.-+..-.|...||..|+..=+.. .-.||.|+.
T Consensus 7 ~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~ 51 (60)
T 2puy_A 7 FCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 51 (60)
T ss_dssp SCTTTCCC---SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHH
T ss_pred CCcCCCCC---CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccC
Confidence 57999863 333333379999999999865543 225888864
No 106
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=58.22 E-value=0.89 Score=30.58 Aligned_cols=42 Identities=26% Similarity=0.515 Sum_probs=28.1
Q ss_pred ccccccccccccCceeEEeCcCCeecHHHHHHHhhc----CCCCCCcCC
Q 041990 179 CLCAICLQEFVVGLQVTRLPCSHIFHGDCVLNWLTK----SKSCPLCRS 223 (225)
Q Consensus 179 c~C~ICLee~~~g~~~~~lpC~H~FH~~CI~~WL~~----~~sCPlCR~ 223 (225)
..|.||... +.-+..-.|...||..|+..=|.. .-.||.|+.
T Consensus 9 ~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~ 54 (66)
T 1xwh_A 9 DECAVCRDG---GELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQ 54 (66)
T ss_dssp CSBSSSSCC---SSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHH
T ss_pred CCCccCCCC---CCEEEcCCCChhhcccccCCCcCcCCCCCeECccccC
Confidence 358999853 333333379999999999865443 225888864
No 107
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=58.03 E-value=15 Score=28.07 Aligned_cols=41 Identities=27% Similarity=0.578 Sum_probs=28.3
Q ss_pred ccccccccccccCceeEEe-CcCCeecHHHHHHHh------h-----cCCCCCCcCC
Q 041990 179 CLCAICLQEFVVGLQVTRL-PCSHIFHGDCVLNWL------T-----KSKSCPLCRS 223 (225)
Q Consensus 179 c~C~ICLee~~~g~~~~~l-pC~H~FH~~CI~~WL------~-----~~~sCPlCR~ 223 (225)
..|.||-+ |.++..- .|...||..||.+-+ + ..=.|++|+-
T Consensus 58 ~~C~vC~d----GG~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 58 EQCRWCAE----GGNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp SSCTTTCC----CSEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CcCeecCC----CCeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 35899974 3343333 699999999999753 1 1237999975
No 108
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=53.02 E-value=13 Score=33.28 Aligned_cols=44 Identities=20% Similarity=0.587 Sum_probs=28.3
Q ss_pred cccccccccccCceeEEeCcCCe--ecHHHHHHHhhc--CCCCCCcCCCC
Q 041990 180 LCAICLQEFVVGLQVTRLPCSHI--FHGDCVLNWLTK--SKSCPLCRSEL 225 (225)
Q Consensus 180 ~C~ICLee~~~g~~~~~lpC~H~--FH~~CI~~WL~~--~~sCPlCR~~l 225 (225)
.|||=+.-+. ..++-..|.|. |-..=.....++ .-.||+|.+.+
T Consensus 217 ~CPlS~~ri~--~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~ 264 (360)
T 4fo9_A 217 MCPLGKMRLT--IPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKA 264 (360)
T ss_dssp BCTTTCSBCS--SEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBC
T ss_pred eCCCccceec--cCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCccc
Confidence 5788777765 34566789999 554443333333 33699998753
No 109
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=52.30 E-value=13 Score=33.42 Aligned_cols=43 Identities=21% Similarity=0.559 Sum_probs=27.4
Q ss_pred cccccccccccCceeEEeCcCCe--ecHHHHHHHhhc--CCCCCCcCCC
Q 041990 180 LCAICLQEFVVGLQVTRLPCSHI--FHGDCVLNWLTK--SKSCPLCRSE 224 (225)
Q Consensus 180 ~C~ICLee~~~g~~~~~lpC~H~--FH~~CI~~WL~~--~~sCPlCR~~ 224 (225)
.|||=...+. ..++-..|.|. |-..=+....++ .-.||+|...
T Consensus 251 ~CPlS~~ri~--~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~ 297 (371)
T 3i2d_A 251 QCPISYTRMK--YPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQID 297 (371)
T ss_dssp BCTTTSSBCS--SEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCB
T ss_pred cCCCcccccc--ccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcc
Confidence 6788877765 34666789998 544333333223 3369999875
No 110
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=50.46 E-value=3.1 Score=27.36 Aligned_cols=41 Identities=37% Similarity=0.634 Sum_probs=25.7
Q ss_pred cccccccccccCceeEEeC--cC-CeecHHHHHHHhhc----CCCCCCcCCC
Q 041990 180 LCAICLQEFVVGLQVTRLP--CS-HIFHGDCVLNWLTK----SKSCPLCRSE 224 (225)
Q Consensus 180 ~C~ICLee~~~g~~~~~lp--C~-H~FH~~CI~~WL~~----~~sCPlCR~~ 224 (225)
-| ||-... .|..+..=. |. ..||..|+. |.. .-.||.|+.+
T Consensus 11 yC-~C~~~~-~g~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~~ 58 (59)
T 3c6w_A 11 YC-LCHQVS-YGEMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQE 58 (59)
T ss_dssp ET-TTTEEC-CSEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHCC
T ss_pred EE-ECCCCC-CCCeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccCc
Confidence 46 887653 343222225 66 699999997 433 3479999753
No 111
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=49.27 E-value=2 Score=29.27 Aligned_cols=44 Identities=18% Similarity=0.183 Sum_probs=28.8
Q ss_pred ccccccccccccCc-eeEEeCcCCeecHHHHHHHh----hcCCCCCCcCC
Q 041990 179 CLCAICLQEFVVGL-QVTRLPCSHIFHGDCVLNWL----TKSKSCPLCRS 223 (225)
Q Consensus 179 c~C~ICLee~~~g~-~~~~lpC~H~FH~~CI~~WL----~~~~sCPlCR~ 223 (225)
..| ||-.....+. .+..-.|...||..|+.--- .....||.|+.
T Consensus 17 ~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~ 65 (72)
T 1wee_A 17 VDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIE 65 (72)
T ss_dssp ECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHH
T ss_pred eEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccC
Confidence 357 7887655553 33334799999999985432 12457999974
No 112
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=48.58 E-value=3.4 Score=27.21 Aligned_cols=40 Identities=38% Similarity=0.647 Sum_probs=24.8
Q ss_pred cccccccccccCceeEEeC--cC-CeecHHHHHHHhhc----CCCCCCcCC
Q 041990 180 LCAICLQEFVVGLQVTRLP--CS-HIFHGDCVLNWLTK----SKSCPLCRS 223 (225)
Q Consensus 180 ~C~ICLee~~~g~~~~~lp--C~-H~FH~~CI~~WL~~----~~sCPlCR~ 223 (225)
-| ||.... .|..+..=. |. ..||..|+. |.. .-.||.|+.
T Consensus 12 ~C-~C~~~~-~g~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 12 YC-LCHQVS-YGEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp ET-TTTEEC-CSEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred EE-ECCCcC-CCCEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 46 897653 232222224 65 689999997 443 346999975
No 113
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=48.55 E-value=6.6 Score=26.22 Aligned_cols=39 Identities=10% Similarity=0.089 Sum_probs=20.6
Q ss_pred cccccccccccCceeEEeCcCCeecH-HHHHHHhhcCCCCCCcC
Q 041990 180 LCAICLQEFVVGLQVTRLPCSHIFHG-DCVLNWLTKSKSCPLCR 222 (225)
Q Consensus 180 ~C~ICLee~~~g~~~~~lpC~H~FH~-~CI~~WL~~~~sCPlCR 222 (225)
.|..|-..+..+.- ...=+..||. .|-.+-+ ...|--|.
T Consensus 29 ~C~~C~~~L~~~~~--~~~~g~~yC~~~cy~~~f--~~~C~~C~ 68 (76)
T 1iml_A 29 KCEKCGKTLTSGGH--AEHEGKPYCNHPCYSAMF--GPKGFGRG 68 (76)
T ss_dssp BCTTTCCBCCTTTE--EEETTEEEETTTHHHHHS--SCCCSSCC
T ss_pred CccccCccCCCCce--ECcCCeEeeCHHHHHHHh--CccCCCcC
Confidence 56777776665421 1233556666 4654432 33465554
No 114
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=48.50 E-value=1.5 Score=31.53 Aligned_cols=45 Identities=22% Similarity=0.391 Sum_probs=28.4
Q ss_pred ccccccccccccCceeEEeCcCCeecHHHHHHHhhc----CCCCCCcCC
Q 041990 179 CLCAICLQEFVVGLQVTRLPCSHIFHGDCVLNWLTK----SKSCPLCRS 223 (225)
Q Consensus 179 c~C~ICLee~~~g~~~~~lpC~H~FH~~CI~~WL~~----~~sCPlCR~ 223 (225)
..|.||...-..+.-+..=.|...||..|+..=|.. .=.||.|+.
T Consensus 17 ~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~ 65 (92)
T 2e6r_A 17 YICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCIL 65 (92)
T ss_dssp CCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHH
T ss_pred CCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcC
Confidence 368999865332222233379999999999743432 225988864
No 115
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=47.09 E-value=1.4 Score=29.68 Aligned_cols=43 Identities=30% Similarity=0.452 Sum_probs=25.8
Q ss_pred cccccccccccCceeEEe--CcCCeecHHHHHHHh---h-----cCCCCCCcCC
Q 041990 180 LCAICLQEFVVGLQVTRL--PCSHIFHGDCVLNWL---T-----KSKSCPLCRS 223 (225)
Q Consensus 180 ~C~ICLee~~~g~~~~~l--pC~H~FH~~CI~~WL---~-----~~~sCPlCR~ 223 (225)
.| ||-.....|..+..= .|...||..|+.--- . .+..||.||.
T Consensus 12 ~C-~C~~~~~~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 12 RC-ICSSTMVNDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp CC-TTCCCSCCSCEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred Ee-ECCCCcCCCCEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 35 786554445433332 388999999973210 0 1357999974
No 116
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=46.89 E-value=3.7 Score=30.48 Aligned_cols=23 Identities=30% Similarity=0.777 Sum_probs=15.9
Q ss_pred eCcCCeecHHHHHHHhhcCCCCCCcCCC
Q 041990 197 LPCSHIFHGDCVLNWLTKSKSCPLCRSE 224 (225)
Q Consensus 197 lpC~H~FH~~CI~~WL~~~~sCPlCR~~ 224 (225)
..||+.|. +=+.....||.|+++
T Consensus 71 ~~CG~~F~-----~~~~kPsrCP~CkSe 93 (105)
T 2gmg_A 71 RKCGFVFK-----AEINIPSRCPKCKSE 93 (105)
T ss_dssp TTTCCBCC-----CCSSCCSSCSSSCCC
T ss_pred hhCcCeec-----ccCCCCCCCcCCCCC
Confidence 46999991 222346789999974
No 117
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=46.05 E-value=2.7 Score=26.68 Aligned_cols=41 Identities=20% Similarity=0.421 Sum_probs=26.0
Q ss_pred ccccccccCceeEEeCcCCeecHHHHHHHhh---cCCCCCCcCC
Q 041990 183 ICLQEFVVGLQVTRLPCSHIFHGDCVLNWLT---KSKSCPLCRS 223 (225)
Q Consensus 183 ICLee~~~g~~~~~lpC~H~FH~~CI~~WL~---~~~sCPlCR~ 223 (225)
||-.....+..+..-.|...||..|+.---. ....||.|+.
T Consensus 8 ~C~~~~~~~~MI~Cd~C~~W~H~~Cvgi~~~~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 8 FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 51 (52)
T ss_dssp TTCCBCTTCCEEECTTTCCEEETTTTTCCGGGCCSSCCCHHHHT
T ss_pred EeCCcCCCCCEEEcCCCCccccccccCCCcccCCCcEECcCCCC
Confidence 6665544223333347999999999863322 3457999975
No 118
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=43.83 E-value=4.7 Score=26.77 Aligned_cols=41 Identities=37% Similarity=0.686 Sum_probs=25.3
Q ss_pred cccccccccccCceeEEeC--cC-CeecHHHHHHHhhc----CCCCCCcCCC
Q 041990 180 LCAICLQEFVVGLQVTRLP--CS-HIFHGDCVLNWLTK----SKSCPLCRSE 224 (225)
Q Consensus 180 ~C~ICLee~~~g~~~~~lp--C~-H~FH~~CI~~WL~~----~~sCPlCR~~ 224 (225)
-| ||-... .|..+..=. |. ..||..|+. |.. .-.||.|+..
T Consensus 13 yC-~C~~~~-~g~MI~CD~c~C~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~~ 60 (62)
T 2g6q_A 13 YC-LCNQVS-YGEMIGCDNEQCPIEWFHFSCVS--LTYKPKGKWYCPKCRGD 60 (62)
T ss_dssp ET-TTTEEC-CSEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHTC
T ss_pred EE-ECCCCC-CCCeeeeeCCCCCcccEecccCC--cCcCCCCCEECcCcccC
Confidence 46 887652 343222224 55 899999996 332 3479999763
No 119
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=43.70 E-value=8.7 Score=28.21 Aligned_cols=11 Identities=36% Similarity=1.132 Sum_probs=10.1
Q ss_pred ecHHHHHHHhh
Q 041990 203 FHGDCVLNWLT 213 (225)
Q Consensus 203 FH~~CI~~WL~ 213 (225)
||+.|+.+|++
T Consensus 42 FCRNCLskWy~ 52 (104)
T 3fyb_A 42 FCRNCLAKWLM 52 (104)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 89999999986
No 120
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=43.64 E-value=8.7 Score=28.25 Aligned_cols=11 Identities=36% Similarity=1.087 Sum_probs=10.1
Q ss_pred ecHHHHHHHhh
Q 041990 203 FHGDCVLNWLT 213 (225)
Q Consensus 203 FH~~CI~~WL~ 213 (225)
||+.|+.+|++
T Consensus 43 FCRNCLskWy~ 53 (105)
T 2o35_A 43 FCRNCLSNWYR 53 (105)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 89999999986
No 121
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=42.23 E-value=26 Score=25.25 Aligned_cols=45 Identities=20% Similarity=0.499 Sum_probs=32.3
Q ss_pred cccccccccccCce----eEEeCcCCeecHHHHHHHhh-cCCCCCCcCCC
Q 041990 180 LCAICLQEFVVGLQ----VTRLPCSHIFHGDCVLNWLT-KSKSCPLCRSE 224 (225)
Q Consensus 180 ~C~ICLee~~~g~~----~~~lpC~H~FH~~CI~~WL~-~~~sCPlCR~~ 224 (225)
.|.||=+++..... +...-|+--.|+.|..-=.+ .+..||.|+.+
T Consensus 18 iCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktr 67 (93)
T 1weo_A 18 FCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTR 67 (93)
T ss_dssp BCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCC
T ss_pred ccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCc
Confidence 58999988654321 23346888899999865554 37799999864
No 122
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=41.51 E-value=11 Score=25.13 Aligned_cols=26 Identities=19% Similarity=0.402 Sum_probs=14.0
Q ss_pred cccccccccccCceeEEeCcCCeecHHH
Q 041990 180 LCAICLQEFVVGLQVTRLPCSHIFHGDC 207 (225)
Q Consensus 180 ~C~ICLee~~~g~~~~~lpC~H~FH~~C 207 (225)
.|+.|-+.+..++.+. .-+..||..|
T Consensus 11 ~C~~C~~~I~~~~~v~--a~~~~~H~~C 36 (76)
T 2cu8_A 11 KCPKCDKTVYFAEKVS--SLGKDWHKFC 36 (76)
T ss_dssp BCTTTCCBCCTTTEEE--ETTEEEETTT
T ss_pred CCcCCCCEeECCeEEE--ECCeEeeCCC
Confidence 4566666665444332 3355666655
No 123
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=39.07 E-value=13 Score=28.58 Aligned_cols=33 Identities=15% Similarity=0.332 Sum_probs=23.9
Q ss_pred ccccccccccccc-c-CceeEEeCcCCeecHHHHH
Q 041990 177 QQCLCAICLQEFV-V-GLQVTRLPCSHIFHGDCVL 209 (225)
Q Consensus 177 ~~c~C~ICLee~~-~-g~~~~~lpC~H~FH~~CI~ 209 (225)
+...|.+|...|. . +......-|+|.+|..|-.
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~ 88 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGV 88 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEE
T ss_pred CCccccccCCCcccccCCCCCCCCCCcccccccCC
Confidence 4456899999984 2 2344555799999999864
No 124
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=38.76 E-value=13 Score=25.30 Aligned_cols=29 Identities=17% Similarity=0.528 Sum_probs=22.5
Q ss_pred ccccccccccccCceeEEeCc-CCeecHHHHHHH
Q 041990 179 CLCAICLQEFVVGLQVTRLPC-SHIFHGDCVLNW 211 (225)
Q Consensus 179 c~C~ICLee~~~g~~~~~lpC-~H~FH~~CI~~W 211 (225)
.-|.||.++ -.++.+.| +-+||..|-...
T Consensus 9 pWC~ICneD----AtlrC~gCdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 9 PWCCICNED----ATLRCAGCDGDLYCARCFREG 38 (67)
T ss_dssp SSCTTTCSC----CCEEETTTTSEEECSSHHHHH
T ss_pred CeeEEeCCC----CeEEecCCCCceehHHHHHHH
Confidence 358999987 34677789 899999996554
No 125
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=38.57 E-value=17 Score=27.33 Aligned_cols=33 Identities=24% Similarity=0.502 Sum_probs=23.7
Q ss_pred ccccccccccccCce-eEEeCcCCeecHHHHHHH
Q 041990 179 CLCAICLQEFVVGLQ-VTRLPCSHIFHGDCVLNW 211 (225)
Q Consensus 179 c~C~ICLee~~~g~~-~~~lpC~H~FH~~CI~~W 211 (225)
..|.+|...|..-.. --.-.||++||..|....
T Consensus 70 ~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 70 QNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp CBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCCcCcCCccccccccccCCCCCeEEChHHhCCc
Confidence 468999999875432 223369999999997554
No 126
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=38.54 E-value=5.1 Score=22.62 Aligned_cols=9 Identities=33% Similarity=0.984 Sum_probs=5.9
Q ss_pred CCCCCcCCC
Q 041990 216 KSCPLCRSE 224 (225)
Q Consensus 216 ~sCPlCR~~ 224 (225)
..||+|+..
T Consensus 4 ~~CpvCk~q 12 (28)
T 2jvx_A 4 FCCPKCQYQ 12 (28)
T ss_dssp EECTTSSCE
T ss_pred ccCcccccc
Confidence 457777754
No 127
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=38.40 E-value=30 Score=24.49 Aligned_cols=35 Identities=23% Similarity=0.336 Sum_probs=26.7
Q ss_pred ccccccccccccCceeEEeC--cCCeecHHHHHHHhhc
Q 041990 179 CLCAICLQEFVVGLQVTRLP--CSHIFHGDCVLNWLTK 214 (225)
Q Consensus 179 c~C~ICLee~~~g~~~~~lp--C~H~FH~~CI~~WL~~ 214 (225)
-.|.+|.+-++...- +..| =.|.||..|-+..++.
T Consensus 16 l~CtlC~erLEdtHF-VQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 16 LCCTICHERLEDTHF-VQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp CCCSSSCSCCSSTTS-EECSSCSSCEECHHHHHHHHHH
T ss_pred eEeecchhhhccCce-eeCCCccCCeeeccccHHHHHh
Confidence 368999998876543 3333 3899999999999875
No 128
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=37.39 E-value=20 Score=25.29 Aligned_cols=36 Identities=17% Similarity=0.286 Sum_probs=24.4
Q ss_pred cccccccccccccccCce-eEEeCcCCeecHHHHHHH
Q 041990 176 RQQCLCAICLQEFVVGLQ-VTRLPCSHIFHGDCVLNW 211 (225)
Q Consensus 176 ~~~c~C~ICLee~~~g~~-~~~lpC~H~FH~~CI~~W 211 (225)
.+...|.+|...|..-.. --.-.||.+||..|....
T Consensus 7 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~ 43 (88)
T 1wfk_A 7 GMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFS 43 (88)
T ss_dssp CCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEE
T ss_pred CcCCCCcCcCCcccCccccccCCCCCCEEChhHcCCc
Confidence 344468999998875422 223369999999997543
No 129
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=37.13 E-value=5.1 Score=29.25 Aligned_cols=44 Identities=20% Similarity=0.378 Sum_probs=27.3
Q ss_pred cccccccccccCceeEEeCcCCeecHHHHHHHhhc----CCCCCCcCC
Q 041990 180 LCAICLQEFVVGLQVTRLPCSHIFHGDCVLNWLTK----SKSCPLCRS 223 (225)
Q Consensus 180 ~C~ICLee~~~g~~~~~lpC~H~FH~~CI~~WL~~----~~sCPlCR~ 223 (225)
.|.||-..-.....+..-.|...||..|+..=+.. .-.||.|+.
T Consensus 56 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~ 103 (111)
T 2ysm_A 56 VCQNCKQSGEDSKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRI 103 (111)
T ss_dssp CCTTTCCCSCCTTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHC
T ss_pred cccccCccCCCCCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcC
Confidence 47788754322222233379999999999764443 235888764
No 130
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=36.26 E-value=31 Score=27.29 Aligned_cols=33 Identities=30% Similarity=0.561 Sum_probs=24.4
Q ss_pred cccccccccccccCceeEEe---CcCCeecHHHHHHHhhc
Q 041990 178 QCLCAICLQEFVVGLQVTRL---PCSHIFHGDCVLNWLTK 214 (225)
Q Consensus 178 ~c~C~ICLee~~~g~~~~~l---pC~H~FH~~CI~~WL~~ 214 (225)
+..|.||-+ |..+..- .|...||..||..++..
T Consensus 79 ~~yC~wC~~----Gg~l~~Cdn~~C~r~FC~~CI~~nvG~ 114 (159)
T 3a1b_A 79 QSYCTICCG----GREVLMCGNNNCCRCFCVECVDLLVGP 114 (159)
T ss_dssp BSSCTTTSC----CSEEEECSSTTTCCEEEHHHHHHHTCT
T ss_pred cceeeEecC----CCeEEeeCCCCCCCchhHHHHHHhcCH
Confidence 446899974 3444443 49999999999999853
No 131
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.15 E-value=14 Score=25.10 Aligned_cols=27 Identities=26% Similarity=0.503 Sum_probs=16.7
Q ss_pred cccccccccccCceeEEeCcCCeecHHHH
Q 041990 180 LCAICLQEFVVGLQVTRLPCSHIFHGDCV 208 (225)
Q Consensus 180 ~C~ICLee~~~g~~~~~lpC~H~FH~~CI 208 (225)
.|+-|-+.+..++.+.. =+..||..|.
T Consensus 17 ~C~~C~~~I~~~~~v~a--~~~~wH~~CF 43 (80)
T 2dj7_A 17 HCAGCKEEIKHGQSLLA--LDKQWHVSCF 43 (80)
T ss_dssp CCTTTCCCCSSSCCEEE--TTEEECTTTC
T ss_pred CCcCcCCeeCCCeEEEE--CCcccccccC
Confidence 56888877765544333 3567777663
No 132
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=35.93 E-value=25 Score=24.72 Aligned_cols=34 Identities=21% Similarity=0.386 Sum_probs=24.5
Q ss_pred ccccccccccccCce-eEEeCcCCeecHHHHHHHh
Q 041990 179 CLCAICLQEFVVGLQ-VTRLPCSHIFHGDCVLNWL 212 (225)
Q Consensus 179 c~C~ICLee~~~g~~-~~~lpC~H~FH~~CI~~WL 212 (225)
..|.+|...|..-.. --.-.||++||..|...+.
T Consensus 21 ~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~ 55 (90)
T 3t7l_A 21 PNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKC 55 (90)
T ss_dssp CBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEE
T ss_pred CcCcCCCCcccchhhCccccCCCCEECCcccCCee
Confidence 468999998875432 2333699999999976653
No 133
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=35.64 E-value=17 Score=26.75 Aligned_cols=38 Identities=26% Similarity=0.554 Sum_probs=24.2
Q ss_pred ccccccccccccCceeEEe---CcCCeecHHHHHHHhhc----CCCCCCcC
Q 041990 179 CLCAICLQEFVVGLQVTRL---PCSHIFHGDCVLNWLTK----SKSCPLCR 222 (225)
Q Consensus 179 c~C~ICLee~~~g~~~~~l---pC~H~FH~~CI~~WL~~----~~sCPlCR 222 (225)
..|.+|.+ .| .+..- .|...||..|+. |.. .-.||.|+
T Consensus 16 ~~C~~C~~---~G-~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~ 60 (107)
T 4gne_A 16 DYCFQCGD---GG-ELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQ 60 (107)
T ss_dssp SSCTTTCC---CS-EEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGB
T ss_pred CCCCcCCC---CC-cEeEECCCCCCcccccccCc--CCcCCCCCEECCCCC
Confidence 35799973 23 33333 488999999997 543 22577654
No 134
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=34.52 E-value=4.1 Score=30.82 Aligned_cols=42 Identities=26% Similarity=0.473 Sum_probs=25.7
Q ss_pred cccccccccccCc-eeEEeCcCCeecHHHHHHHhhcCCCCCCc
Q 041990 180 LCAICLQEFVVGL-QVTRLPCSHIFHGDCVLNWLTKSKSCPLC 221 (225)
Q Consensus 180 ~C~ICLee~~~g~-~~~~lpC~H~FH~~CI~~WL~~~~sCPlC 221 (225)
.|..|-..|..-. +--.-.||.+||..|..+.......|-.|
T Consensus 21 ~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C 63 (120)
T 1y02_A 21 SCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLC 63 (120)
T ss_dssp CCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHH
T ss_pred cccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHH
Confidence 6799999886532 22334799999999976554434444433
No 135
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=34.50 E-value=4.7 Score=29.84 Aligned_cols=44 Identities=23% Similarity=0.347 Sum_probs=28.6
Q ss_pred cccccccccccCceeEEeCcCCeecHHHHHHHhhc----CCCCCCcCC
Q 041990 180 LCAICLQEFVVGLQVTRLPCSHIFHGDCVLNWLTK----SKSCPLCRS 223 (225)
Q Consensus 180 ~C~ICLee~~~g~~~~~lpC~H~FH~~CI~~WL~~----~~sCPlCR~ 223 (225)
.|.||...-..+.-+..-.|...||..|+..=|.. .-.||.|+.
T Consensus 60 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~ 107 (114)
T 2kwj_A 60 SCILCGTSENDDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWE 107 (114)
T ss_dssp CCTTTTCCTTTTTEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHH
T ss_pred ccCcccccCCCCceEEcCCCCccccccccCCCccCCCCCCeECccccc
Confidence 57899765433333333379999999999754433 225888854
No 136
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=33.70 E-value=9.1 Score=26.05 Aligned_cols=42 Identities=26% Similarity=0.551 Sum_probs=26.5
Q ss_pred cccccccccC-ceeEEeCcCCeecHHHHHHHhh-----cCCCCCCcCC
Q 041990 182 AICLQEFVVG-LQVTRLPCSHIFHGDCVLNWLT-----KSKSCPLCRS 223 (225)
Q Consensus 182 ~ICLee~~~g-~~~~~lpC~H~FH~~CI~~WL~-----~~~sCPlCR~ 223 (225)
-||-..+..+ ..+..-.|.-.||..|+.---. ....||.|+.
T Consensus 13 CiC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~ 60 (75)
T 3kqi_A 13 CVCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEK 60 (75)
T ss_dssp TTTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHH
T ss_pred EECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCcc
Confidence 3787655433 3333337999999999954321 2457999864
No 137
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=33.52 E-value=25 Score=24.22 Aligned_cols=33 Identities=30% Similarity=0.581 Sum_probs=23.5
Q ss_pred ccccccccccccCce-eEEeCcCCeecHHHHHHH
Q 041990 179 CLCAICLQEFVVGLQ-VTRLPCSHIFHGDCVLNW 211 (225)
Q Consensus 179 c~C~ICLee~~~g~~-~~~lpC~H~FH~~CI~~W 211 (225)
..|.+|...|..-.. --.-.||.+||..|....
T Consensus 20 ~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 53 (82)
T 2yw8_A 20 THCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNE 53 (82)
T ss_dssp CBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEE
T ss_pred CcccCcCCcccCccccccCCCCCCEEChHHhCCe
Confidence 368999999875432 222369999999997554
No 138
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=33.04 E-value=36 Score=23.89 Aligned_cols=46 Identities=17% Similarity=0.328 Sum_probs=28.1
Q ss_pred cccccccccccc-cCceeEEe-CcCCeecHHHHHHHhh--cCCCCCCcCC
Q 041990 178 QCLCAICLQEFV-VGLQVTRL-PCSHIFHGDCVLNWLT--KSKSCPLCRS 223 (225)
Q Consensus 178 ~c~C~ICLee~~-~g~~~~~l-pC~H~FH~~CI~~WL~--~~~sCPlCR~ 223 (225)
...|.||...-. .+..+..- .|.-.||..|+..-+. ..=.||.|+.
T Consensus 25 ~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~ 74 (88)
T 2l43_A 25 DAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 74 (88)
T ss_dssp CCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccC
Confidence 346899986431 12233332 6999999999975321 1235888864
No 139
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=32.09 E-value=12 Score=22.01 Aligned_cols=13 Identities=15% Similarity=0.669 Sum_probs=10.3
Q ss_pred ccccccccccccC
Q 041990 179 CLCAICLQEFVVG 191 (225)
Q Consensus 179 c~C~ICLee~~~g 191 (225)
-.||||+..+...
T Consensus 6 FiCP~C~~~l~s~ 18 (34)
T 3mjh_B 6 FICPQCMKSLGSA 18 (34)
T ss_dssp EECTTTCCEESSH
T ss_pred cCCcHHHHHcCCH
Confidence 4689999988764
No 140
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=31.52 E-value=29 Score=23.34 Aligned_cols=32 Identities=22% Similarity=0.401 Sum_probs=22.6
Q ss_pred cccccccccccCce-eEEeCcCCeecHHHHHHH
Q 041990 180 LCAICLQEFVVGLQ-VTRLPCSHIFHGDCVLNW 211 (225)
Q Consensus 180 ~C~ICLee~~~g~~-~~~lpC~H~FH~~CI~~W 211 (225)
.|.+|...|..-.. --.-.||.+||..|....
T Consensus 13 ~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~~ 45 (73)
T 1vfy_A 13 ACMICSKKFSLLNRKHHCRSCGGVFCQEHSSNS 45 (73)
T ss_dssp BCTTTCCBCBTTBCCEECTTTCCEECGGGSCEE
T ss_pred cccCCCCccCCccccccCCCCCEEEcccccCCe
Confidence 58999998875422 222369999999997543
No 141
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=31.18 E-value=29 Score=24.02 Aligned_cols=33 Identities=21% Similarity=0.400 Sum_probs=23.8
Q ss_pred ccccccccccccCce-eEEeCcCCeecHHHHHHH
Q 041990 179 CLCAICLQEFVVGLQ-VTRLPCSHIFHGDCVLNW 211 (225)
Q Consensus 179 c~C~ICLee~~~g~~-~~~lpC~H~FH~~CI~~W 211 (225)
..|.+|...|..-.. --.-.||++||..|....
T Consensus 22 ~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 22 PACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp CBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred CCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 468999999875432 222369999999997654
No 142
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.08 E-value=31 Score=22.98 Aligned_cols=27 Identities=30% Similarity=0.548 Sum_probs=12.8
Q ss_pred cccccccccccCceeEEeCcCCeecHHH
Q 041990 180 LCAICLQEFVVGLQVTRLPCSHIFHGDC 207 (225)
Q Consensus 180 ~C~ICLee~~~g~~~~~lpC~H~FH~~C 207 (225)
.|+.|-+.+..++.+ ...=+..||..|
T Consensus 17 ~C~~C~~~I~~~~~~-~~a~~~~~H~~C 43 (82)
T 1x63_A 17 KCKGCFKAIVAGDQN-VEYKGTVWHKDC 43 (82)
T ss_dssp BCSSSCCBCCSSSCE-EECSSCEEETTT
T ss_pred cCccCCcccccCceE-EEECcccccccc
Confidence 356666655543322 122355566554
No 143
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=30.48 E-value=19 Score=25.33 Aligned_cols=45 Identities=29% Similarity=0.614 Sum_probs=29.1
Q ss_pred cccccccccccc-CceeEEe-CcCCeecHHHHHHHhhc--------CCCCCCcCC
Q 041990 179 CLCAICLQEFVV-GLQVTRL-PCSHIFHGDCVLNWLTK--------SKSCPLCRS 223 (225)
Q Consensus 179 c~C~ICLee~~~-g~~~~~l-pC~H~FH~~CI~~WL~~--------~~sCPlCR~ 223 (225)
..|.||...-.. +..+... .|...||..|+..=|.. .=.||.|+.
T Consensus 17 ~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~ 71 (88)
T 1wev_A 17 LACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTR 71 (88)
T ss_dssp CSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHH
T ss_pred CcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccc
Confidence 468999875332 1233333 79999999999865531 236888864
No 144
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=30.03 E-value=40 Score=22.71 Aligned_cols=45 Identities=18% Similarity=0.325 Sum_probs=27.9
Q ss_pred cccccccccc-ccCceeEEe-CcCCeecHHHHHHHhh--cCCCCCCcCC
Q 041990 179 CLCAICLQEF-VVGLQVTRL-PCSHIFHGDCVLNWLT--KSKSCPLCRS 223 (225)
Q Consensus 179 c~C~ICLee~-~~g~~~~~l-pC~H~FH~~CI~~WL~--~~~sCPlCR~ 223 (225)
..|.||...- ..+..+..- .|.-.||..|+..-.. ..=.||.|+.
T Consensus 17 ~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 17 AVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp CSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 4689998653 122233322 7999999999974321 1236888864
No 145
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=28.96 E-value=22 Score=28.95 Aligned_cols=33 Identities=24% Similarity=0.546 Sum_probs=23.6
Q ss_pred ccccccccccccCce-eEEeCcCCeecHHHHHHH
Q 041990 179 CLCAICLQEFVVGLQ-VTRLPCSHIFHGDCVLNW 211 (225)
Q Consensus 179 c~C~ICLee~~~g~~-~~~lpC~H~FH~~CI~~W 211 (225)
..|.+|...|..-.. --.-.||++||..|....
T Consensus 162 ~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~ 195 (220)
T 1dvp_A 162 RVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQ 195 (220)
T ss_dssp SBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEE
T ss_pred CccCCCCCccCCcccccccCCcCCEEChHHhCCe
Confidence 468999998875422 223369999999997554
No 146
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=28.60 E-value=2.6 Score=29.68 Aligned_cols=17 Identities=29% Similarity=0.843 Sum_probs=14.0
Q ss_pred EEeC-cCCeecHHHHHHH
Q 041990 195 TRLP-CSHIFHGDCVLNW 211 (225)
Q Consensus 195 ~~lp-C~H~FH~~CI~~W 211 (225)
+.-| |++.||..|-..|
T Consensus 44 v~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 44 ATCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp EECTTTCCEECSSSCSBC
T ss_pred eEeCCCCCccccccCCch
Confidence 3445 9999999998888
No 147
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=27.98 E-value=29 Score=27.10 Aligned_cols=31 Identities=29% Similarity=0.581 Sum_probs=23.5
Q ss_pred ccccccccccccc--CceeEEeCcCCeecHHHH
Q 041990 178 QCLCAICLQEFVV--GLQVTRLPCSHIFHGDCV 208 (225)
Q Consensus 178 ~c~C~ICLee~~~--g~~~~~lpC~H~FH~~CI 208 (225)
...|++|...|.- +......-|+|.+|..|-
T Consensus 68 ~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~ 100 (153)
T 2zet_C 68 ETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS 100 (153)
T ss_dssp GTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE
T ss_pred CccchhhcCccccccCCCCcCCCCCchhhcccc
Confidence 4568999997643 344555579999999997
No 148
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.31 E-value=33 Score=23.66 Aligned_cols=33 Identities=21% Similarity=0.308 Sum_probs=23.0
Q ss_pred ccccccccccccCce-eEEeCcCCeecHHHHHHH
Q 041990 179 CLCAICLQEFVVGLQ-VTRLPCSHIFHGDCVLNW 211 (225)
Q Consensus 179 c~C~ICLee~~~g~~-~~~lpC~H~FH~~CI~~W 211 (225)
..|.+|...|..-.. --.-.||.+||..|....
T Consensus 15 ~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~ 48 (84)
T 1x4u_A 15 GNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSFK 48 (84)
T ss_dssp SSCSSSCCCCCSSSCCEECSSSCCEECTTTSCEE
T ss_pred CcCcCcCCccccchhhhhhcCCCcEEChhhcCCc
Confidence 468999999864322 222369999999996543
No 149
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=27.25 E-value=29 Score=27.40 Aligned_cols=25 Identities=16% Similarity=0.345 Sum_probs=16.2
Q ss_pred eeEEeCcCCeecHHHHHHHhhcCCCCCCcCCC
Q 041990 193 QVTRLPCSHIFHGDCVLNWLTKSKSCPLCRSE 224 (225)
Q Consensus 193 ~~~~lpC~H~FH~~CI~~WL~~~~sCPlCR~~ 224 (225)
..++..|||++-. .....||+|..+
T Consensus 138 ~~~C~~CG~i~~~-------~~p~~CP~Cg~~ 162 (170)
T 3pwf_A 138 VYICPICGYTAVD-------EAPEYCPVCGAP 162 (170)
T ss_dssp EEECTTTCCEEES-------CCCSBCTTTCCB
T ss_pred eeEeCCCCCeeCC-------CCCCCCCCCCCC
Confidence 3344568888862 234589999753
No 150
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=27.10 E-value=27 Score=28.74 Aligned_cols=33 Identities=27% Similarity=0.532 Sum_probs=24.0
Q ss_pred ccccccccccccCce-eEEeCcCCeecHHHHHHH
Q 041990 179 CLCAICLQEFVVGLQ-VTRLPCSHIFHGDCVLNW 211 (225)
Q Consensus 179 c~C~ICLee~~~g~~-~~~lpC~H~FH~~CI~~W 211 (225)
..|.+|...|..-.. --.-.||++||..|-...
T Consensus 165 ~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~ 198 (226)
T 3zyq_A 165 EECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKY 198 (226)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEE
T ss_pred CCCcCcCCCCCccccccccCCCcCEeChhhcCCc
Confidence 368999999875432 233369999999997654
No 151
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.85 E-value=37 Score=21.87 Aligned_cols=9 Identities=22% Similarity=0.814 Sum_probs=4.0
Q ss_pred ccccccccc
Q 041990 181 CAICLQEFV 189 (225)
Q Consensus 181 C~ICLee~~ 189 (225)
|+.|-+.+.
T Consensus 8 C~~C~~~I~ 16 (72)
T 1x4k_A 8 CQECKKTIM 16 (72)
T ss_dssp BSSSCCCCC
T ss_pred CccCCCccc
Confidence 344444443
No 152
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.01 E-value=31 Score=22.38 Aligned_cols=10 Identities=30% Similarity=0.514 Sum_probs=5.1
Q ss_pred cccccccccc
Q 041990 180 LCAICLQEFV 189 (225)
Q Consensus 180 ~C~ICLee~~ 189 (225)
.|+-|-+.+.
T Consensus 7 ~C~~C~~~I~ 16 (72)
T 1x4l_A 7 GCAGCTNPIS 16 (72)
T ss_dssp SBTTTTBCCC
T ss_pred CCcCCCcccc
Confidence 3455555544
No 153
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=25.74 E-value=33 Score=21.94 Aligned_cols=28 Identities=18% Similarity=0.576 Sum_probs=15.5
Q ss_pred cccccccccccCceeEEeCcCCeecHHHH
Q 041990 180 LCAICLQEFVVGLQVTRLPCSHIFHGDCV 208 (225)
Q Consensus 180 ~C~ICLee~~~g~~~~~lpC~H~FH~~CI 208 (225)
.|+-|-..+..++.+.. .=+..||..|.
T Consensus 13 ~C~~C~~~i~~~e~~~~-~~~~~~H~~CF 40 (72)
T 3f6q_B 13 TCERCKGGFAPAEKIVN-SNGELYHEQCF 40 (72)
T ss_dssp BCTTTCCBCCTTCEEEE-ETTEEEETTTS
T ss_pred cchhcCccccCCceEEE-eCcCeeCcCCC
Confidence 46777776665443321 34556776664
No 154
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=25.20 E-value=12 Score=34.77 Aligned_cols=41 Identities=29% Similarity=0.551 Sum_probs=26.9
Q ss_pred cccccccc-CceeEEeCcCCeecHHHHHHHhh-----cCCCCCCcCC
Q 041990 183 ICLQEFVV-GLQVTRLPCSHIFHGDCVLNWLT-----KSKSCPLCRS 223 (225)
Q Consensus 183 ICLee~~~-g~~~~~lpC~H~FH~~CI~~WL~-----~~~sCPlCR~ 223 (225)
||-..+.. +..+.+-.|.-.||..|+.---. ..-.||.|+.
T Consensus 41 ~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~ 87 (488)
T 3kv5_D 41 VCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAV 87 (488)
T ss_dssp TTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHH
T ss_pred eCCCcCCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcC
Confidence 88776543 33344447999999999943222 1357999974
No 155
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.56 E-value=33 Score=22.60 Aligned_cols=9 Identities=22% Similarity=0.785 Sum_probs=5.0
Q ss_pred ccccccccc
Q 041990 181 CAICLQEFV 189 (225)
Q Consensus 181 C~ICLee~~ 189 (225)
|+.|-+.+.
T Consensus 8 C~~C~~~I~ 16 (76)
T 1x68_A 8 CVACSKPIS 16 (76)
T ss_dssp CTTTCCCCC
T ss_pred CccCCCccc
Confidence 466655554
No 156
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=24.50 E-value=37 Score=24.90 Aligned_cols=26 Identities=27% Similarity=0.638 Sum_probs=17.5
Q ss_pred eeEEeCcCCeecHHHHHHHhhcCC-CCCCcCCC
Q 041990 193 QVTRLPCSHIFHGDCVLNWLTKSK-SCPLCRSE 224 (225)
Q Consensus 193 ~~~~lpC~H~FH~~CI~~WL~~~~-sCPlCR~~ 224 (225)
......|+|.|-.. .... .||.|..+
T Consensus 73 ~~~C~~CG~~~e~~------~~~~~~CP~Cgs~ 99 (119)
T 2kdx_A 73 ELECKDCSHVFKPN------ALDYGVCEKCHSK 99 (119)
T ss_dssp EEECSSSSCEECSC------CSTTCCCSSSSSC
T ss_pred eEEcCCCCCEEeCC------CCCCCcCccccCC
Confidence 34556788888752 2356 79999764
No 157
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=24.47 E-value=16 Score=32.45 Aligned_cols=45 Identities=24% Similarity=0.482 Sum_probs=0.0
Q ss_pred ccccccccccccCce-eEEeCcCCeecHHHHHHHhhc-------CCCCCCcCC
Q 041990 179 CLCAICLQEFVVGLQ-VTRLPCSHIFHGDCVLNWLTK-------SKSCPLCRS 223 (225)
Q Consensus 179 c~C~ICLee~~~g~~-~~~lpC~H~FH~~CI~~WL~~-------~~sCPlCR~ 223 (225)
..|.+|-..|..-.. --.-.||++||..|-..++.. ...|-.|-.
T Consensus 376 ~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~ 428 (434)
T 3mpx_A 376 MMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFG 428 (434)
T ss_dssp -----------------------------------------------------
T ss_pred CcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHH
Confidence 368999998864422 233469999999999876521 345766643
No 158
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.27 E-value=31 Score=22.29 Aligned_cols=9 Identities=44% Similarity=0.925 Sum_probs=3.9
Q ss_pred ccccccccc
Q 041990 180 LCAICLQEF 188 (225)
Q Consensus 180 ~C~ICLee~ 188 (225)
.|..|-..+
T Consensus 35 ~C~~C~~~L 43 (72)
T 1wyh_A 35 LCSGCEQPL 43 (72)
T ss_dssp BCTTTCCBT
T ss_pred eECCCCCcC
Confidence 344444444
No 159
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=23.81 E-value=15 Score=26.29 Aligned_cols=41 Identities=27% Similarity=0.469 Sum_probs=24.1
Q ss_pred ccccccccccccCceeEEeCcC---CeecHHHHHHHhhc----CCCCCC-cCC
Q 041990 179 CLCAICLQEFVVGLQVTRLPCS---HIFHGDCVLNWLTK----SKSCPL-CRS 223 (225)
Q Consensus 179 c~C~ICLee~~~g~~~~~lpC~---H~FH~~CI~~WL~~----~~sCPl-CR~ 223 (225)
.-| ||-... .|..+..=.|. -.||..|+. |.. .-.||. |+.
T Consensus 27 ~yC-iC~~~~-~g~MI~CD~c~C~~eWfH~~CVg--l~~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 27 VYC-FCRNVS-YGPMVACDNPACPFEWFHYGCVG--LKQAPKGKWYCSKDCKE 75 (90)
T ss_dssp CCS-TTTCCC-SSSEECCCSSSCSCSCEETTTSS--CSSCTTSCCCSSHHHHH
T ss_pred cEE-EeCCCC-CCCEEEecCCCCccccCcCccCC--CCcCCCCCccCChhhcc
Confidence 346 897642 24322222444 689999995 332 346998 863
No 160
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.75 E-value=22 Score=24.13 Aligned_cols=27 Identities=33% Similarity=0.712 Sum_probs=16.2
Q ss_pred cccccccccccCceeEEeCcCCeecHHHH
Q 041990 180 LCAICLQEFVVGLQVTRLPCSHIFHGDCV 208 (225)
Q Consensus 180 ~C~ICLee~~~g~~~~~lpC~H~FH~~CI 208 (225)
.|+.|-..+..++.+. .=+..||..|.
T Consensus 17 ~C~~C~~~I~~~e~v~--a~~~~wH~~CF 43 (82)
T 2co8_A 17 LCALCGEHLYVLERLC--VNGHFFHRSCF 43 (82)
T ss_dssp BCSSSCCBCCTTTBCC--BTTBCCBTTTC
T ss_pred CCcccCCCcccceEEE--ECCCeeCCCcC
Confidence 4688877765444332 34667777663
No 161
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=23.30 E-value=4.1 Score=27.19 Aligned_cols=46 Identities=28% Similarity=0.530 Sum_probs=30.5
Q ss_pred ccccccccc-ccccCceeEEeCcCCeecHHHHHHHhhc-CC---CCCCcCC
Q 041990 178 QCLCAICLQ-EFVVGLQVTRLPCSHIFHGDCVLNWLTK-SK---SCPLCRS 223 (225)
Q Consensus 178 ~c~C~ICLe-e~~~g~~~~~lpC~H~FH~~CI~~WL~~-~~---sCPlCR~ 223 (225)
...|.||+. .|..|.--...-|.-.||..|-.+|-.+ ++ .|-+||+
T Consensus 9 ~~~C~iC~KTKFADG~Gh~C~yCk~r~CaRCGg~v~lr~~k~~WvC~lC~k 59 (62)
T 2a20_A 9 APTCGICHKTKFADGCGHNCSYCQTKFCARCGGRVSLRSNKVMWVCNLCRK 59 (62)
T ss_dssp CCCCSSSSCSCCCSSCCEEBTTTCCEECTTSEEEEESSTTCEEEEEHHHHH
T ss_pred cchhhhhccceeccCCCccccccCCeeecccCCEeeecCCeEEEEehhhhh
Confidence 347899987 5666644444468888888887777433 33 3777764
No 162
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=22.72 E-value=8.9 Score=26.51 Aligned_cols=20 Identities=20% Similarity=0.610 Sum_probs=15.8
Q ss_pred CcCCeecHHHHHHHhhcCCCCC
Q 041990 198 PCSHIFHGDCVLNWLTKSKSCP 219 (225)
Q Consensus 198 pC~H~FH~~CI~~WL~~~~sCP 219 (225)
.|++.||..|-..|=. .+|.
T Consensus 55 ~C~~~FC~~C~~~wH~--~~C~ 74 (80)
T 2jmo_A 55 GCGFAFCRECKEAYHE--GECS 74 (80)
T ss_dssp CCSCCEETTTTEECCS--SCSS
T ss_pred CCCCeeccccCccccC--Cccc
Confidence 5999999999998844 4553
No 163
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=22.61 E-value=55 Score=29.48 Aligned_cols=42 Identities=26% Similarity=0.539 Sum_probs=28.8
Q ss_pred ccccccccccccccCceeEE-e--CcCCeecHHHHHHHhhc----------CCCCCCcC
Q 041990 177 QQCLCAICLQEFVVGLQVTR-L--PCSHIFHGDCVLNWLTK----------SKSCPLCR 222 (225)
Q Consensus 177 ~~c~C~ICLee~~~g~~~~~-l--pC~H~FH~~CI~~WL~~----------~~sCPlCR 222 (225)
.+..|.||-+ |.++.. - .|...||..||..++.. .=.|=+|.
T Consensus 92 ~~~yCr~C~~----Gg~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~ 146 (386)
T 2pv0_B 92 YQSYCSICCS----GETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCL 146 (386)
T ss_dssp SBCSCTTTCC----CSSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTS
T ss_pred CcccceEcCC----CCeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcC
Confidence 3446899975 233333 3 69999999999999832 23677775
No 164
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=22.43 E-value=81 Score=22.80 Aligned_cols=46 Identities=9% Similarity=-0.029 Sum_probs=30.1
Q ss_pred cccccccccccCceeEEeCcCCeecHHHHHHHhhcCCCCCCcCCCC
Q 041990 180 LCAICLQEFVVGLQVTRLPCSHIFHGDCVLNWLTKSKSCPLCRSEL 225 (225)
Q Consensus 180 ~C~ICLee~~~g~~~~~lpC~H~FH~~CI~~WL~~~~sCPlCR~~l 225 (225)
.|..|-..+..........=+..||..|-.+-+.....|-.|..+|
T Consensus 34 ~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I 79 (122)
T 1m3v_A 34 KCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMG 79 (122)
T ss_dssp CCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSSCCS
T ss_pred CcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCCCCc
Confidence 6788877775211112234567888888888776666798887764
No 165
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=22.06 E-value=26 Score=19.62 Aligned_cols=26 Identities=23% Similarity=0.390 Sum_probs=17.8
Q ss_pred cccccccccccCceeEEeCcCCeecHHH
Q 041990 180 LCAICLQEFVVGLQVTRLPCSHIFHGDC 207 (225)
Q Consensus 180 ~C~ICLee~~~g~~~~~lpC~H~FH~~C 207 (225)
.|+.|-...-..+++. -=+..||..|
T Consensus 5 ~C~~C~k~Vy~~Ek~~--~~g~~~Hk~C 30 (31)
T 1zfo_A 5 NCARCGKIVYPTEKVN--CLDKFWHKAC 30 (31)
T ss_dssp BCSSSCSBCCGGGCCC--SSSSCCCGGG
T ss_pred cCCccCCEEecceeEE--ECCeEecccC
Confidence 4799987665554433 3578999888
No 166
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=21.59 E-value=24 Score=27.24 Aligned_cols=23 Identities=26% Similarity=0.550 Sum_probs=14.1
Q ss_pred EeCcCCeecHHHHHHHhhcCCCCCCcCCC
Q 041990 196 RLPCSHIFHGDCVLNWLTKSKSCPLCRSE 224 (225)
Q Consensus 196 ~lpC~H~FH~~CI~~WL~~~~sCPlCR~~ 224 (225)
+..|+|.|-.. .....||.|..+
T Consensus 135 C~~Cg~~~~~~------~~~~~Cp~CG~~ 157 (165)
T 2lcq_A 135 CIGCGRKFSTL------PPGGVCPDCGSK 157 (165)
T ss_dssp ESSSCCEESSC------CGGGBCTTTCCB
T ss_pred CCCCCCcccCC------CCCCcCCCCCCc
Confidence 34577777532 223479998764
No 167
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=21.49 E-value=30 Score=27.68 Aligned_cols=24 Identities=21% Similarity=0.560 Sum_probs=14.8
Q ss_pred EEeCcCCeecHHHHHHHhhcCCCCCCcCCC
Q 041990 195 TRLPCSHIFHGDCVLNWLTKSKSCPLCRSE 224 (225)
Q Consensus 195 ~~lpC~H~FH~~CI~~WL~~~~sCPlCR~~ 224 (225)
++..|||+|-.. .....||+|..+
T Consensus 157 ~C~~CG~~~~g~------~~p~~CP~C~~~ 180 (191)
T 1lko_A 157 RCRNCGYVHEGT------GAPELCPACAHP 180 (191)
T ss_dssp EETTTCCEEEEE------ECCSBCTTTCCB
T ss_pred EECCCCCEeeCC------CCCCCCCCCcCC
Confidence 344688887532 123489999764
No 168
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.29 E-value=53 Score=21.00 Aligned_cols=11 Identities=9% Similarity=0.410 Sum_probs=5.1
Q ss_pred CCeecHHHHHH
Q 041990 200 SHIFHGDCVLN 210 (225)
Q Consensus 200 ~H~FH~~CI~~ 210 (225)
+..||..|-.+
T Consensus 51 ~~~yC~~cy~~ 61 (70)
T 2d8z_A 51 DFAYCLNCFCD 61 (70)
T ss_dssp SSEECHHHHHH
T ss_pred CeEECHHHHHH
Confidence 34455555433
No 169
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.51 E-value=37 Score=23.16 Aligned_cols=25 Identities=24% Similarity=0.452 Sum_probs=11.7
Q ss_pred cccccccccccCceeEEeCcCCeecHHH
Q 041990 180 LCAICLQEFVVGLQVTRLPCSHIFHGDC 207 (225)
Q Consensus 180 ~C~ICLee~~~g~~~~~lpC~H~FH~~C 207 (225)
.|+-|-+.+. +..+ ..-+..||..|
T Consensus 27 ~C~~C~~~I~-~~~v--~a~~~~~H~~C 51 (90)
T 2dar_A 27 MCAHCNQVIR-GPFL--VALGKSWHPEE 51 (90)
T ss_dssp BBSSSCCBCC-SCEE--EETTEEECTTT
T ss_pred CCccCCCEec-ceEE--EECCccccccC
Confidence 3566665553 2222 23355556554
No 170
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.44 E-value=45 Score=21.78 Aligned_cols=27 Identities=19% Similarity=0.555 Sum_probs=11.7
Q ss_pred cccccccccccCceeEEeCcCCeecHHH
Q 041990 180 LCAICLQEFVVGLQVTRLPCSHIFHGDC 207 (225)
Q Consensus 180 ~C~ICLee~~~g~~~~~lpC~H~FH~~C 207 (225)
.|+-|-+.+...+.+. ..-+..||..|
T Consensus 13 ~C~~C~~~I~~~~~~~-~a~~~~~H~~C 39 (77)
T 1g47_A 13 TCERCKGGFAPAEKIV-NSNGELYHEQC 39 (77)
T ss_dssp BCSSSCCBCCSTTTCE-EETTEEECTTT
T ss_pred CchhcCCccCCCceEE-EeCccEecccc
Confidence 3566665554322211 12244555544
No 171
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.40 E-value=41 Score=21.61 Aligned_cols=31 Identities=10% Similarity=0.038 Sum_probs=13.2
Q ss_pred cccccccccccCceeEEeCcCCeecHHHHHHHh
Q 041990 180 LCAICLQEFVVGLQVTRLPCSHIFHGDCVLNWL 212 (225)
Q Consensus 180 ~C~ICLee~~~g~~~~~lpC~H~FH~~CI~~WL 212 (225)
.|..|-..+..+. ....=+..||..|-.+-+
T Consensus 33 ~C~~C~~~L~~~~--f~~~~g~~yC~~c~~~~~ 63 (70)
T 2d8x_A 33 RCDLCQEVLADIG--FVKNAGRHLCRPCHNREK 63 (70)
T ss_dssp BCSSSCCBCSSSC--CEEETTEEECHHHHHHHH
T ss_pred EeCCCCCcCCCCc--cEeECCeEECHHHhhhhc
Confidence 4455554444331 111234455555554443
No 172
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.22 E-value=43 Score=22.23 Aligned_cols=26 Identities=19% Similarity=0.303 Sum_probs=16.0
Q ss_pred cccccccccccCceeEEeCcCCeecHHHH
Q 041990 180 LCAICLQEFVVGLQVTRLPCSHIFHGDCV 208 (225)
Q Consensus 180 ~C~ICLee~~~g~~~~~lpC~H~FH~~CI 208 (225)
.|+-|-+.+.. . ....-+..||..|.
T Consensus 17 ~C~~C~~~I~~-~--~~~a~~~~~H~~CF 42 (79)
T 1x62_A 17 MCDKCGTGIVG-V--FVKLRDRHRHPECY 42 (79)
T ss_dssp CCSSSCCCCCS-S--CEECSSCEECTTTT
T ss_pred ccccCCCCccC-c--EEEECcceeCcCcC
Confidence 56888777653 2 23345677777664
Done!