Query 041991
Match_columns 325
No_of_seqs 231 out of 1275
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 22:19:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041991.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041991hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gv2_A C-MYB, MYB proto-oncoge 100.0 1.5E-34 5.2E-39 235.0 10.9 105 13-118 1-105 (105)
2 2k9n_A MYB24; R2R3 domain, DNA 100.0 4E-34 1.4E-38 234.2 10.3 104 16-120 1-104 (107)
3 3zqc_A MYB3; transcription-DNA 100.0 1.4E-33 4.7E-38 238.6 12.5 107 15-122 1-107 (131)
4 1h8a_C AMV V-MYB, MYB transfor 100.0 9E-34 3.1E-38 238.4 9.9 107 11-118 22-128 (128)
5 3osg_A MYB21; transcription-DN 100.0 2.8E-33 9.6E-38 235.4 11.5 105 10-116 5-109 (126)
6 1h89_C C-MYB, MYB proto-oncoge 100.0 1.3E-31 4.4E-36 232.7 9.3 107 11-118 53-159 (159)
7 1h89_C C-MYB, MYB proto-oncoge 100.0 4.2E-30 1.4E-34 223.1 6.3 103 13-116 3-106 (159)
8 2dim_A Cell division cycle 5-l 99.8 3.5E-22 1.2E-26 151.9 3.8 66 11-77 4-69 (70)
9 1h8a_C AMV V-MYB, MYB transfor 99.8 1.2E-20 4.2E-25 158.3 5.4 74 42-116 1-75 (128)
10 1ign_A Protein (RAP1); RAP1,ye 99.7 2.6E-18 8.9E-23 158.6 8.5 106 11-117 3-200 (246)
11 2llk_A Cyclin-D-binding MYB-li 99.7 1.4E-18 4.6E-23 134.3 5.0 58 56-114 10-67 (73)
12 2juh_A Telomere binding protei 99.7 1.6E-18 5.5E-23 145.7 4.1 83 11-93 12-103 (121)
13 2cu7_A KIAA1915 protein; nucle 99.7 1.5E-17 5.2E-22 127.1 8.3 63 63-126 3-65 (72)
14 2roh_A RTBP1, telomere binding 99.7 6.8E-18 2.3E-22 142.1 6.1 80 11-90 26-114 (122)
15 2d9a_A B-MYB, MYB-related prot 99.7 1E-17 3.6E-22 123.4 4.9 57 11-68 3-59 (60)
16 1gvd_A MYB proto-oncogene prot 99.7 9.7E-18 3.3E-22 120.3 4.3 52 14-66 1-52 (52)
17 2din_A Cell division cycle 5-l 99.7 3.7E-17 1.3E-21 122.8 7.1 59 62-121 2-60 (66)
18 1guu_A C-MYB, MYB proto-oncoge 99.7 1.7E-17 5.9E-22 118.8 3.6 52 14-66 1-52 (52)
19 1ity_A TRF1; helix-turn-helix, 99.7 2.3E-17 7.8E-22 125.1 4.3 63 11-73 5-68 (69)
20 3sjm_A Telomeric repeat-bindin 99.6 9.2E-17 3.1E-21 120.8 3.4 57 12-68 7-64 (64)
21 2d9a_A B-MYB, MYB-related prot 99.6 2.7E-16 9.2E-21 115.8 5.4 55 64-118 3-58 (60)
22 1guu_A C-MYB, MYB proto-oncoge 99.6 1.1E-15 3.7E-20 109.5 6.2 50 67-116 1-51 (52)
23 1x41_A Transcriptional adaptor 99.6 6.1E-16 2.1E-20 114.4 4.4 55 12-67 4-58 (60)
24 1ity_A TRF1; helix-turn-helix, 99.6 2.1E-15 7.1E-20 114.2 7.2 60 62-121 3-65 (69)
25 1w0t_A Telomeric repeat bindin 99.6 6.8E-16 2.3E-20 111.2 3.5 50 15-64 1-51 (53)
26 1gvd_A MYB proto-oncogene prot 99.6 2.1E-15 7E-20 108.1 5.8 50 67-116 1-51 (52)
27 1w0t_A Telomeric repeat bindin 99.6 3.4E-15 1.2E-19 107.6 6.5 50 68-117 1-53 (53)
28 2dim_A Cell division cycle 5-l 99.6 2.7E-15 9.3E-20 113.8 5.7 57 64-120 4-61 (70)
29 1x41_A Transcriptional adaptor 99.5 5.9E-15 2E-19 109.0 6.4 52 64-115 3-55 (60)
30 2din_A Cell division cycle 5-l 99.5 6.2E-16 2.1E-20 116.1 1.1 58 11-71 4-61 (66)
31 2yum_A ZZZ3 protein, zinc fing 99.5 1.3E-15 4.4E-20 116.9 2.4 61 11-72 3-68 (75)
32 2elk_A SPCC24B10.08C protein; 99.5 2.8E-15 9.5E-20 110.3 3.7 52 12-63 5-56 (58)
33 2yum_A ZZZ3 protein, zinc fing 99.5 8E-15 2.7E-19 112.5 5.5 57 64-120 3-65 (75)
34 2ltp_A Nuclear receptor corepr 99.3 1.6E-15 5.3E-20 120.8 0.0 57 61-117 8-64 (89)
35 3sjm_A Telomeric repeat-bindin 99.5 2.8E-14 9.5E-19 107.2 6.6 52 67-118 9-63 (64)
36 2cu7_A KIAA1915 protein; nucle 99.5 6.6E-15 2.2E-19 112.4 2.4 57 11-69 4-60 (72)
37 2aje_A Telomere repeat-binding 99.5 2.7E-14 9.3E-19 117.3 5.3 79 11-89 8-95 (105)
38 2elk_A SPCC24B10.08C protein; 99.5 6.2E-14 2.1E-18 103.0 6.6 50 65-114 5-56 (58)
39 2ckx_A NGTRF1, telomere bindin 99.5 4.3E-14 1.5E-18 111.5 5.8 69 17-86 1-79 (83)
40 2yus_A SWI/SNF-related matrix- 99.4 1.3E-13 4.6E-18 107.6 4.8 60 2-63 4-63 (79)
41 2cqr_A RSGI RUH-043, DNAJ homo 99.4 3.8E-13 1.3E-17 103.7 5.7 52 64-115 13-68 (73)
42 2llk_A Cyclin-D-binding MYB-li 99.4 2.1E-13 7.1E-18 105.2 4.2 58 8-69 15-72 (73)
43 3zqc_A MYB3; transcription-DNA 99.4 2E-13 6.9E-18 114.9 4.5 82 11-98 49-130 (131)
44 2yus_A SWI/SNF-related matrix- 99.3 1.2E-12 4E-17 102.2 4.9 48 66-113 15-62 (79)
45 2ckx_A NGTRF1, telomere bindin 99.3 5.6E-12 1.9E-16 99.4 8.2 49 70-118 1-54 (83)
46 3osg_A MYB21; transcription-DN 99.3 2.1E-12 7.2E-17 108.1 5.9 54 64-117 6-59 (126)
47 1gv2_A C-MYB, MYB proto-oncoge 99.3 1.7E-12 5.7E-17 104.9 5.0 50 66-115 1-51 (105)
48 2ltp_A Nuclear receptor corepr 98.9 3.6E-13 1.2E-17 107.1 0.0 53 11-65 11-63 (89)
49 2aje_A Telomere repeat-binding 99.3 8.6E-12 2.9E-16 102.4 7.8 55 64-118 8-67 (105)
50 1x58_A Hypothetical protein 49 99.3 5.7E-12 1.9E-16 94.2 6.1 49 68-116 7-58 (62)
51 2juh_A Telomere binding protei 99.3 7E-12 2.4E-16 105.3 7.2 56 63-118 11-71 (121)
52 2cjj_A Radialis; plant develop 99.3 8.6E-12 2.9E-16 100.3 7.4 59 68-126 7-70 (93)
53 1ign_A Protein (RAP1); RAP1,ye 99.3 2.7E-12 9.2E-17 118.6 4.7 55 65-119 4-64 (246)
54 2cqr_A RSGI RUH-043, DNAJ homo 99.2 1.9E-12 6.7E-17 99.7 2.5 55 9-64 11-68 (73)
55 2k9n_A MYB24; R2R3 domain, DNA 99.2 1.5E-11 5.1E-16 100.0 5.2 48 69-116 1-49 (107)
56 2roh_A RTBP1, telomere binding 99.2 6.9E-11 2.4E-15 99.4 8.3 54 65-118 27-85 (122)
57 3hm5_A DNA methyltransferase 1 99.0 5.8E-10 2E-14 89.7 7.8 66 52-121 17-87 (93)
58 2eqr_A N-COR1, N-COR, nuclear 99.0 8.6E-10 3E-14 81.6 6.3 48 68-115 11-58 (61)
59 2cqq_A RSGI RUH-037, DNAJ homo 99.0 6.5E-10 2.2E-14 85.4 5.7 59 66-125 5-67 (72)
60 2cjj_A Radialis; plant develop 98.9 3E-10 1E-14 91.3 2.2 49 14-63 6-57 (93)
61 1x58_A Hypothetical protein 49 98.7 6.1E-09 2.1E-13 77.9 3.6 50 14-65 6-58 (62)
62 2iw5_B Protein corest, REST co 98.7 8.3E-09 2.8E-13 94.7 5.2 49 68-116 132-180 (235)
63 2eqr_A N-COR1, N-COR, nuclear 98.7 9.8E-09 3.4E-13 75.9 3.8 53 10-64 6-58 (61)
64 2cqq_A RSGI RUH-037, DNAJ homo 98.4 6.4E-08 2.2E-12 74.2 2.5 52 12-65 4-58 (72)
65 1wgx_A KIAA1903 protein; MYB D 98.4 1.8E-07 6.3E-12 72.0 4.8 47 69-115 8-58 (73)
66 2xag_B REST corepressor 1; ami 98.4 1.3E-07 4.4E-12 95.2 5.1 46 70-115 381-426 (482)
67 1fex_A TRF2-interacting telome 98.4 8.7E-08 3E-12 70.7 2.2 48 16-64 2-58 (59)
68 1fex_A TRF2-interacting telome 98.4 4.5E-07 1.5E-11 66.9 5.0 47 69-115 2-58 (59)
69 2iw5_B Protein corest, REST co 98.2 5.2E-07 1.8E-11 82.9 3.8 52 11-64 128-179 (235)
70 1wgx_A KIAA1903 protein; MYB D 98.2 6.6E-07 2.3E-11 68.9 2.5 49 16-65 8-59 (73)
71 1ug2_A 2610100B20RIK gene prod 98.2 2.6E-06 9E-11 68.0 5.7 45 71-115 35-82 (95)
72 2yqk_A Arginine-glutamic acid 98.1 5.5E-06 1.9E-10 61.6 6.9 51 64-114 4-55 (63)
73 4iej_A DNA methyltransferase 1 98.0 1.9E-05 6.6E-10 63.3 8.0 60 57-120 22-86 (93)
74 2lr8_A CAsp8-associated protei 97.2 9.3E-07 3.2E-11 67.1 0.0 44 71-115 16-62 (70)
75 1ofc_X ISWI protein; nuclear p 97.9 2.4E-05 8.3E-10 74.7 9.1 103 17-120 111-279 (304)
76 4eef_G F-HB80.4, designed hema 97.9 2.7E-06 9.4E-11 65.4 0.8 43 69-111 20-66 (74)
77 4a69_C Nuclear receptor corepr 97.6 9.5E-05 3.2E-09 59.1 5.9 46 69-114 43-88 (94)
78 2crg_A Metastasis associated p 97.6 0.00015 5E-09 55.0 6.4 44 69-112 8-52 (70)
79 4eef_G F-HB80.4, designed hema 97.6 2.2E-05 7.7E-10 60.4 1.7 45 15-60 19-66 (74)
80 2yqk_A Arginine-glutamic acid 97.4 9.6E-05 3.3E-09 54.8 3.8 51 11-63 4-55 (63)
81 2xag_B REST corepressor 1; ami 97.3 0.00011 3.7E-09 74.1 4.1 50 13-64 377-426 (482)
82 3hm5_A DNA methyltransferase 1 97.0 0.00031 1E-08 56.3 3.1 51 13-64 27-81 (93)
83 2ebi_A DNA binding protein GT- 97.0 0.00057 1.9E-08 53.0 4.5 50 69-118 4-67 (86)
84 2ebi_A DNA binding protein GT- 96.9 0.00017 5.8E-09 56.0 0.3 51 14-64 2-64 (86)
85 4b4c_A Chromodomain-helicase-D 96.8 0.0036 1.2E-07 55.5 8.1 45 71-115 136-195 (211)
86 2y9y_A Imitation switch protei 96.7 0.0053 1.8E-07 60.1 9.6 105 17-122 124-297 (374)
87 2crg_A Metastasis associated p 96.7 0.00092 3.1E-08 50.5 3.1 47 15-63 7-54 (70)
88 1ug2_A 2610100B20RIK gene prod 96.7 0.00064 2.2E-08 54.3 2.0 46 17-63 34-81 (95)
89 4a69_C Nuclear receptor corepr 96.6 0.001 3.6E-08 53.0 3.2 45 16-62 43-87 (94)
90 2lr8_A CAsp8-associated protei 95.1 0.00086 2.9E-08 50.9 0.0 46 17-64 15-62 (70)
91 1irz_A ARR10-B; helix-turn-hel 94.6 0.12 4E-06 38.6 6.9 48 68-115 6-58 (64)
92 4iej_A DNA methyltransferase 1 93.3 0.054 1.9E-06 43.3 3.2 49 14-63 28-80 (93)
93 4b4c_A Chromodomain-helicase-D 92.8 0.16 5.6E-06 44.7 6.0 50 68-117 6-60 (211)
94 1ofc_X ISWI protein; nuclear p 92.6 0.19 6.4E-06 47.9 6.4 47 69-115 110-157 (304)
95 2xb0_X Chromo domain-containin 90.0 0.22 7.4E-06 46.7 3.9 29 17-45 169-197 (270)
96 1irz_A ARR10-B; helix-turn-hel 89.3 0.32 1.1E-05 36.2 3.6 50 12-62 3-56 (64)
97 2xb0_X Chromo domain-containin 82.0 3 0.0001 38.9 7.1 47 69-115 3-54 (270)
98 2o8x_A Probable RNA polymerase 72.0 6.6 0.00023 27.3 5.0 42 75-117 18-59 (70)
99 3hug_A RNA polymerase sigma fa 68.9 10 0.00035 28.4 5.8 41 75-116 40-80 (92)
100 1ku3_A Sigma factor SIGA; heli 68.6 8.5 0.00029 27.6 5.1 42 75-117 13-58 (73)
101 2p7v_B Sigma-70, RNA polymeras 66.0 8.4 0.00029 27.2 4.5 42 75-117 8-53 (68)
102 2k27_A Paired box protein PAX- 61.1 38 0.0013 27.5 8.4 79 15-98 22-111 (159)
103 1k78_A Paired box protein PAX5 57.8 58 0.002 25.9 8.8 79 15-98 29-118 (149)
104 2rq5_A Protein jumonji; develo 56.8 41 0.0014 27.4 7.7 79 12-116 3-96 (121)
105 1x3u_A Transcriptional regulat 53.2 29 0.00099 24.6 5.6 41 73-116 18-58 (79)
106 2y9y_A Imitation switch protei 51.2 26 0.00088 34.2 6.4 46 69-114 123-170 (374)
107 2li6_A SWI/SNF chromatin-remod 51.1 5 0.00017 32.4 1.2 39 26-65 53-98 (116)
108 3ulq_B Transcriptional regulat 50.7 33 0.0011 26.0 5.8 46 68-116 26-71 (90)
109 2rq5_A Protein jumonji; develo 50.3 6.4 0.00022 32.4 1.7 56 26-84 46-112 (121)
110 1or7_A Sigma-24, RNA polymeras 48.0 38 0.0013 27.7 6.2 36 81-117 149-184 (194)
111 2li6_A SWI/SNF chromatin-remod 46.3 19 0.00067 28.8 4.0 38 79-116 53-98 (116)
112 1je8_A Nitrate/nitrite respons 45.7 35 0.0012 25.0 5.1 43 71-116 21-63 (82)
113 1tty_A Sigma-A, RNA polymerase 45.4 34 0.0012 25.3 5.1 40 76-116 22-65 (87)
114 3c57_A Two component transcrip 45.1 34 0.0012 25.8 5.1 43 71-116 27-69 (95)
115 1fse_A GERE; helix-turn-helix 44.8 36 0.0012 23.6 4.9 44 70-116 10-53 (74)
116 1ig6_A MRF-2, modulator recogn 43.7 8.2 0.00028 30.5 1.3 40 26-65 37-87 (107)
117 2jpc_A SSRB; DNA binding prote 42.4 45 0.0015 22.3 5.0 38 77-116 3-40 (61)
118 2jrz_A Histone demethylase jar 42.2 7.8 0.00027 31.3 1.0 40 26-65 44-93 (117)
119 1c20_A DEAD ringer protein; DN 41.7 8 0.00027 31.7 1.0 40 26-65 56-106 (128)
120 1u78_A TC3 transposase, transp 41.7 1.2E+02 0.004 23.4 9.4 86 17-108 5-98 (141)
121 2cxy_A BAF250B subunit, HBAF25 41.6 8 0.00027 31.6 1.0 40 26-65 55-104 (125)
122 2lm1_A Lysine-specific demethy 41.1 44 0.0015 26.0 5.3 38 79-116 48-97 (107)
123 1xsv_A Hypothetical UPF0122 pr 39.8 56 0.0019 25.7 5.8 41 75-116 28-68 (113)
124 2lm1_A Lysine-specific demethy 39.3 8.4 0.00029 30.3 0.8 40 26-65 48-97 (107)
125 2kk0_A AT-rich interactive dom 39.0 21 0.00072 29.9 3.2 40 26-65 68-118 (145)
126 3mzy_A RNA polymerase sigma-H 38.3 43 0.0015 26.2 4.9 31 85-116 121-151 (164)
127 2jrz_A Histone demethylase jar 38.2 41 0.0014 27.0 4.8 38 79-116 44-93 (117)
128 1rp3_A RNA polymerase sigma fa 38.1 52 0.0018 27.6 5.7 41 75-116 190-230 (239)
129 2q1z_A RPOE, ECF SIGE; ECF sig 37.0 22 0.00074 29.0 3.0 34 83-117 146-179 (184)
130 1pdn_C Protein (PRD paired); p 36.4 29 0.00099 26.2 3.5 67 16-87 15-91 (128)
131 2cxy_A BAF250B subunit, HBAF25 36.2 49 0.0017 26.7 5.0 38 79-116 55-104 (125)
132 2yqf_A Ankyrin-1; death domain 35.8 54 0.0018 25.8 5.1 35 73-108 14-48 (111)
133 2eqy_A RBP2 like, jumonji, at 35.7 11 0.00037 30.7 0.9 40 26-65 46-95 (122)
134 2eqy_A RBP2 like, jumonji, at 34.6 54 0.0018 26.5 4.9 38 79-116 46-95 (122)
135 1kkx_A Transcription regulator 34.4 25 0.00084 28.7 2.9 38 80-117 53-98 (123)
136 1p4w_A RCSB; solution structur 33.9 1.4E+02 0.0046 23.0 7.0 45 69-116 32-76 (99)
137 2rnj_A Response regulator prot 33.6 40 0.0014 25.0 3.8 43 71-116 29-71 (91)
138 3cz6_A DNA-binding protein RAP 33.3 33 0.0011 29.9 3.5 25 12-36 110-142 (168)
139 2lfw_A PHYR sigma-like domain; 33.2 59 0.002 26.3 5.1 43 75-118 96-138 (157)
140 3i4p_A Transcriptional regulat 32.1 43 0.0015 27.6 4.1 45 75-120 3-48 (162)
141 3i4p_A Transcriptional regulat 28.7 18 0.00063 29.9 1.2 44 22-67 3-46 (162)
142 1ig6_A MRF-2, modulator recogn 28.7 47 0.0016 26.0 3.6 38 79-116 37-87 (107)
143 1s7o_A Hypothetical UPF0122 pr 28.6 91 0.0031 24.5 5.3 40 75-115 25-64 (113)
144 3e7l_A Transcriptional regulat 28.3 84 0.0029 21.9 4.6 42 75-125 19-60 (63)
145 1c20_A DEAD ringer protein; DN 27.9 83 0.0028 25.4 5.0 39 78-116 55-106 (128)
146 2kk0_A AT-rich interactive dom 27.8 77 0.0026 26.3 4.9 38 79-116 68-118 (145)
147 2dbb_A Putative HTH-type trans 27.3 1.1E+02 0.0036 24.5 5.6 45 75-120 9-54 (151)
148 2jxj_A Histone demethylase jar 26.5 34 0.0012 26.2 2.3 37 79-115 40-88 (96)
149 2of5_H Leucine-rich repeat and 25.9 75 0.0026 25.3 4.3 31 77-108 13-43 (118)
150 1ntc_A Protein (nitrogen regul 25.4 98 0.0033 23.2 4.7 33 75-108 51-83 (91)
151 1tc3_C Protein (TC3 transposas 25.1 1.2E+02 0.0042 18.4 5.5 38 71-110 5-42 (51)
152 2o71_A Death domain-containing 24.8 86 0.003 25.1 4.5 28 79-107 26-53 (115)
153 2of5_A Death domain-containing 24.3 82 0.0028 25.2 4.3 28 79-107 26-53 (114)
154 2e1c_A Putative HTH-type trans 22.4 1E+02 0.0034 25.8 4.7 45 74-119 26-71 (171)
155 2cyy_A Putative HTH-type trans 21.1 1.3E+02 0.0044 24.1 4.9 44 75-119 7-51 (151)
156 1wxp_A THO complex subunit 1; 20.7 1E+02 0.0035 24.1 4.2 31 77-108 18-48 (110)
157 1k78_A Paired box protein PAX5 20.7 2.3E+02 0.0077 22.3 6.4 38 69-108 30-67 (149)
158 2dmn_A Homeobox protein TGIF2L 20.1 2.7E+02 0.0091 20.5 7.9 51 68-120 10-67 (83)
No 1
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=100.00 E-value=1.5e-34 Score=235.01 Aligned_cols=105 Identities=41% Similarity=0.820 Sum_probs=99.7
Q ss_pred CCCcCCCCHHHHHHHHHHHHHhCCCCcccccccccccccchhhhhhhhhhcCCCCCCCCCChHHHHHHHHHHHhhCCCHH
Q 041991 13 KMKRGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWMNYLRPDIKRGPFAPEEVATIIQLHGLFGNKWA 92 (325)
Q Consensus 13 ~lkKG~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCR~RW~n~L~P~lkrg~WT~EED~~Ll~l~~~~G~kWs 92 (325)
.+++|+||+|||++|+++|++||.++|..||+.++ +|+++||++||.++|+|.+++++||+|||++|++++.+||++|+
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~ 79 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWA 79 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTST-TCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhc-CCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHH
Confidence 47899999999999999999999989999999997 89999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCCCHHHHHHHHHHHHHHHH
Q 041991 93 AIASHLPGRTDNDIKNLWNTRLKKHL 118 (325)
Q Consensus 93 ~IA~~LpGRT~nq~KnRW~t~lkkkl 118 (325)
.||++|||||+++|+|||+.++++++
T Consensus 80 ~Ia~~l~gRt~~~~k~rw~~~~~~~~ 105 (105)
T 1gv2_A 80 EIAKLLPGRTDNAIKNHWNSTMRRKV 105 (105)
T ss_dssp HHHTTCTTCCHHHHHHHHHHHTC---
T ss_pred HHHHHcCCCCHHHHHHHHHHHHhccC
Confidence 99999999999999999999998764
No 2
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=100.00 E-value=4e-34 Score=234.17 Aligned_cols=104 Identities=31% Similarity=0.609 Sum_probs=100.5
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCcccccccccccccchhhhhhhhhhcCCCCCCCCCChHHHHHHHHHHHhhCCCHHHHH
Q 041991 16 RGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWMNYLRPDIKRGPFAPEEVATIIQLHGLFGNKWAAIA 95 (325)
Q Consensus 16 KG~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCR~RW~n~L~P~lkrg~WT~EED~~Ll~l~~~~G~kWs~IA 95 (325)
||+||+|||++|+++|.+||.++|..||..++ +|+++|||+||.++|+|.+++|+||+|||++|++++.+||++|+.||
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia 79 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMI-TRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKIS 79 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTT-TSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcC-CCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHHH
Confidence 68999999999999999999989999999998 89999999999999999999999999999999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHHHHhh
Q 041991 96 SHLPGRTDNDIKNLWNTRLKKHLQS 120 (325)
Q Consensus 96 ~~LpGRT~nq~KnRW~t~lkkkl~~ 120 (325)
++|||||+++|++||+.++++..+.
T Consensus 80 ~~l~gRt~~~~k~rw~~l~r~~~~~ 104 (107)
T 2k9n_A 80 KFLKNRSDNNIRNRWMMIARHRAKH 104 (107)
T ss_dssp HHHSSSCHHHHHHHHHHHHHHHHSS
T ss_pred HHCCCCCHHHHHHHHHHHHhhHHHh
Confidence 9999999999999999999886654
No 3
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=100.00 E-value=1.4e-33 Score=238.56 Aligned_cols=107 Identities=37% Similarity=0.704 Sum_probs=102.6
Q ss_pred CcCCCCHHHHHHHHHHHHHhCCCCcccccccccccccchhhhhhhhhhcCCCCCCCCCChHHHHHHHHHHHhhCCCHHHH
Q 041991 15 KRGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWMNYLRPDIKRGPFAPEEVATIIQLHGLFGNKWAAI 94 (325)
Q Consensus 15 kKG~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCR~RW~n~L~P~lkrg~WT~EED~~Ll~l~~~~G~kWs~I 94 (325)
.||+||+|||++|+++|.+||.++|..||+.++ +|+++|||+||.++|+|.+++|+||+|||++|++++.+||++|+.|
T Consensus 1 vKg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~I 79 (131)
T 3zqc_A 1 MKGPFTEAEDDLIREYVKENGPQNWPRITSFLP-NRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVI 79 (131)
T ss_dssp CCSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCT-TSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHC-CCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHH
Confidence 379999999999999999999889999999997 8999999999999999999999999999999999999999999999
Q ss_pred HhhCCCCCHHHHHHHHHHHHHHHHhhcc
Q 041991 95 ASHLPGRTDNDIKNLWNTRLKKHLQSMN 122 (325)
Q Consensus 95 A~~LpGRT~nq~KnRW~t~lkkkl~~~~ 122 (325)
|++|||||+++|+|||++++++++....
T Consensus 80 a~~l~gRt~~~~k~rw~~~l~~~~~~~~ 107 (131)
T 3zqc_A 80 AKLIPGRTDNAIKNRWNSSISKRISTNS 107 (131)
T ss_dssp TTTSTTCCHHHHHHHHHHTTGGGCCCCT
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHhhcCC
Confidence 9999999999999999999999876543
No 4
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=100.00 E-value=9e-34 Score=238.42 Aligned_cols=107 Identities=39% Similarity=0.804 Sum_probs=102.6
Q ss_pred cCCCCcCCCCHHHHHHHHHHHHHhCCCCcccccccccccccchhhhhhhhhhcCCCCCCCCCChHHHHHHHHHHHhhCCC
Q 041991 11 MEKMKRGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWMNYLRPDIKRGPFAPEEVATIIQLHGLFGNK 90 (325)
Q Consensus 11 k~~lkKG~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCR~RW~n~L~P~lkrg~WT~EED~~Ll~l~~~~G~k 90 (325)
++.+++|+||+|||++|+++|++||.++|..||+.++ +|+++||++||.++|+|.+++++||+|||++|++++.+||++
T Consensus 22 ~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~G~~ 100 (128)
T 1h8a_C 22 NPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNR 100 (128)
T ss_dssp CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSS-SCCHHHHHHHHHHTTCSSSCCSCCCHHHHHHHHHHHHHHCSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhc-CCcHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHCcC
Confidence 6889999999999999999999999989999999998 899999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCCHHHHHHHHHHHHHHHH
Q 041991 91 WAAIASHLPGRTDNDIKNLWNTRLKKHL 118 (325)
Q Consensus 91 Ws~IA~~LpGRT~nq~KnRW~t~lkkkl 118 (325)
|+.||++|||||+++|+|||+.++++++
T Consensus 101 W~~Ia~~l~gRt~~~~k~r~~~~~~~~~ 128 (128)
T 1h8a_C 101 WAEIAKLLPGRTDNAVKNHWNSTMRRKV 128 (128)
T ss_dssp HHHHGGGSTTCCHHHHHHHHHTTTTC--
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHhccC
Confidence 9999999999999999999999998763
No 5
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=100.00 E-value=2.8e-33 Score=235.44 Aligned_cols=105 Identities=38% Similarity=0.725 Sum_probs=101.1
Q ss_pred ccCCCCcCCCCHHHHHHHHHHHHHhCCCCcccccccccccccchhhhhhhhhhcCCCCCCCCCChHHHHHHHHHHHhhCC
Q 041991 10 DMEKMKRGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWMNYLRPDIKRGPFAPEEVATIIQLHGLFGN 89 (325)
Q Consensus 10 dk~~lkKG~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCR~RW~n~L~P~lkrg~WT~EED~~Ll~l~~~~G~ 89 (325)
.+...+||+||+|||++|+++|.+||. +|..||+.++ +|+++|||+||.++|+|.+++++||+|||++|++++.+||+
T Consensus 5 ~~~~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~ 82 (126)
T 3osg_A 5 NLKAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATFP-NRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGR 82 (126)
T ss_dssp C-CBCSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHTCT-TCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCS
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcC-CCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCc
Confidence 467899999999999999999999998 9999999997 89999999999999999999999999999999999999999
Q ss_pred CHHHHHhhCCCCCHHHHHHHHHHHHHH
Q 041991 90 KWAAIASHLPGRTDNDIKNLWNTRLKK 116 (325)
Q Consensus 90 kWs~IA~~LpGRT~nq~KnRW~t~lkk 116 (325)
+|+.||++|||||+++|++||+.++++
T Consensus 83 ~W~~Ia~~l~gRt~~~~k~rw~~l~~k 109 (126)
T 3osg_A 83 QWAIIAKFFPGRTDIHIKNRWVTISNK 109 (126)
T ss_dssp CHHHHHTTSTTCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHh
Confidence 999999999999999999999998886
No 6
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.97 E-value=1.3e-31 Score=232.68 Aligned_cols=107 Identities=40% Similarity=0.796 Sum_probs=102.4
Q ss_pred cCCCCcCCCCHHHHHHHHHHHHHhCCCCcccccccccccccchhhhhhhhhhcCCCCCCCCCChHHHHHHHHHHHhhCCC
Q 041991 11 MEKMKRGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWMNYLRPDIKRGPFAPEEVATIIQLHGLFGNK 90 (325)
Q Consensus 11 k~~lkKG~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCR~RW~n~L~P~lkrg~WT~EED~~Ll~l~~~~G~k 90 (325)
.+.+++|+||+|||++|+++|.+||..+|..||+.++ +|+++|||.||.++|+|.+++++||+|||++|++++.+||++
T Consensus 53 ~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~g~~ 131 (159)
T 1h89_C 53 NPELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNR 131 (159)
T ss_dssp CTTCCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTST-TCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHHHCSC
T ss_pred CCCcCCCCCChHHHHHHHHHHHHhCcccHHHHHHHcC-CCCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHHHHCCC
Confidence 6789999999999999999999999888999999997 899999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCCHHHHHHHHHHHHHHHH
Q 041991 91 WAAIASHLPGRTDNDIKNLWNTRLKKHL 118 (325)
Q Consensus 91 Ws~IA~~LpGRT~nq~KnRW~t~lkkkl 118 (325)
|+.||++|||||+++|+|||+.++++++
T Consensus 132 W~~Ia~~l~gRt~~~~knr~~~~~r~~~ 159 (159)
T 1h89_C 132 WAEIAKLLPGRTDNAIKNHWNSTMRRKV 159 (159)
T ss_dssp HHHHHTTSTTCCHHHHHHHHHTTTCC--
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHhccC
Confidence 9999999999999999999999998764
No 7
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.96 E-value=4.2e-30 Score=223.13 Aligned_cols=103 Identities=29% Similarity=0.709 Sum_probs=60.6
Q ss_pred CCCcCCCCHHHHHHHHHHHHHhCCCCcccccccccccccchhhhhhhhhhcCCCCCCCCCChHHHHHHHHHHHhhCC-CH
Q 041991 13 KMKRGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWMNYLRPDIKRGPFAPEEVATIIQLHGLFGN-KW 91 (325)
Q Consensus 13 ~lkKG~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCR~RW~n~L~P~lkrg~WT~EED~~Ll~l~~~~G~-kW 91 (325)
++++++||+|||++|+++|.+||.++|..||+.++ +|+++|||+||.++|+|.+++++||+|||++|++++.+||. +|
T Consensus 3 ~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W 81 (159)
T 1h89_C 3 HLGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRW 81 (159)
T ss_dssp -----------------------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcC-CCCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccH
Confidence 57899999999999999999999989999999998 89999999999999999999999999999999999999996 69
Q ss_pred HHHHhhCCCCCHHHHHHHHHHHHHH
Q 041991 92 AAIASHLPGRTDNDIKNLWNTRLKK 116 (325)
Q Consensus 92 s~IA~~LpGRT~nq~KnRW~t~lkk 116 (325)
..||.+|||||+++|++||+++|.+
T Consensus 82 ~~Ia~~l~~Rt~~qcr~Rw~~~l~p 106 (159)
T 1h89_C 82 SVIAKHLKGRIGKQCRERWHNHLNP 106 (159)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHTTCT
T ss_pred HHHHHHcCCCCHHHHHHHHHHHhCc
Confidence 9999999999999999999988754
No 8
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=3.5e-22 Score=151.93 Aligned_cols=66 Identities=27% Similarity=0.563 Sum_probs=63.8
Q ss_pred cCCCCcCCCCHHHHHHHHHHHHHhCCCCcccccccccccccchhhhhhhhhhcCCCCCCCCCChHHH
Q 041991 11 MEKMKRGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWMNYLRPDIKRGPFAPEEV 77 (325)
Q Consensus 11 k~~lkKG~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCR~RW~n~L~P~lkrg~WT~EED 77 (325)
.+.+++|+||+|||++|+++|.+||.++|..||+.|+ +|+++|||+||.+||+|.+++++||+|||
T Consensus 4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd 69 (70)
T 2dim_A 4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLH-RKSAKQCKARWYEWLDPSIKKTEWSGPSS 69 (70)
T ss_dssp CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHST-TCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhc-CCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence 5789999999999999999999999889999999998 89999999999999999999999999997
No 9
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.81 E-value=1.2e-20 Score=158.27 Aligned_cols=74 Identities=28% Similarity=0.682 Sum_probs=50.5
Q ss_pred ccccccccccchhhhhhhhhhcCCCCCCCCCChHHHHHHHHHHHhhCC-CHHHHHhhCCCCCHHHHHHHHHHHHHH
Q 041991 42 LPKQAGILRSGKSCRLRWMNYLRPDIKRGPFAPEEVATIIQLHGLFGN-KWAAIASHLPGRTDNDIKNLWNTRLKK 116 (325)
Q Consensus 42 IAk~lg~~Rt~kQCR~RW~n~L~P~lkrg~WT~EED~~Ll~l~~~~G~-kWs~IA~~LpGRT~nq~KnRW~t~lkk 116 (325)
||+.++ +|+++||+.||.++|+|++++|+||+|||++|++++.+||. +|..||.+|||||+.+|++||+++|.+
T Consensus 1 Ia~~~~-~Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p 75 (128)
T 1h8a_C 1 MEAVIK-NRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNP 75 (128)
T ss_dssp ----------------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCS
T ss_pred CccccC-CCCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhccc
Confidence 677887 89999999999999999999999999999999999999996 699999999999999999999988753
No 10
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.74 E-value=2.6e-18 Score=158.60 Aligned_cols=106 Identities=17% Similarity=0.293 Sum_probs=91.9
Q ss_pred cCCCCcCCCCHHHHHHHHHHHHHhCCC-----CcccccccccccccchhhhhhhhhhcCCCCC-----------------
Q 041991 11 MEKMKRGVWSPEEDAKLIQYIKEHGHG-----TWRHLPKQAGILRSGKSCRLRWMNYLRPDIK----------------- 68 (325)
Q Consensus 11 k~~lkKG~WT~EEDe~L~~lV~k~G~~-----nW~~IAk~lg~~Rt~kQCR~RW~n~L~P~lk----------------- 68 (325)
...++|++||+|||++|+++|+++|.. .|..||+.|+ +|++.|||.||.++|++.+.
T Consensus 3 ~~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~Lp-GRT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~G 81 (246)
T 1ign_A 3 LPSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVP-NHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDG 81 (246)
T ss_dssp -----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTST-TSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTS
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcC-CCCHHHHHHHHHHHHhhhcccccccCcchhhhhccCC
Confidence 356889999999999999999999764 2999999998 89999999999999999986
Q ss_pred ------------CCCCChHHHHHHHHHHHh-h------------------------------------------------
Q 041991 69 ------------RGPFAPEEVATIIQLHGL-F------------------------------------------------ 87 (325)
Q Consensus 69 ------------rg~WT~EED~~Ll~l~~~-~------------------------------------------------ 87 (325)
+..||.+||-.|+..+.+ |
T Consensus 82 n~ikis~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 161 (246)
T 1ign_A 82 NLIKTKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYR 161 (246)
T ss_dssp CBCEESSCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------C
T ss_pred CceeeeccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhc
Confidence 789999999999998876 2
Q ss_pred -----CC----CHHHHHhhCCCCCHHHHHHHHHHHHHHH
Q 041991 88 -----GN----KWAAIASHLPGRTDNDIKNLWNTRLKKH 117 (325)
Q Consensus 88 -----G~----kWs~IA~~LpGRT~nq~KnRW~t~lkkk 117 (325)
|. .|.+||+.+|+||.+.+|+||+..+++.
T Consensus 162 ~~~~~gp~~~~~fk~ia~~~P~HT~~SWRdRyrKfl~~~ 200 (246)
T 1ign_A 162 TQSRRGPIAREFFKHFAEEHAAHTENAWRDRFRKFLLAY 200 (246)
T ss_dssp CCCCCCCCCTTHHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred cccccCcchHHHHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence 11 6999999999999999999999888754
No 11
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.73 E-value=1.4e-18 Score=134.28 Aligned_cols=58 Identities=24% Similarity=0.424 Sum_probs=47.3
Q ss_pred hhhhhhhcCCCCCCCCCChHHHHHHHHHHHhhCCCHHHHHhhCCCCCHHHHHHHHHHHH
Q 041991 56 RLRWMNYLRPDIKRGPFAPEEVATIIQLHGLFGNKWAAIASHLPGRTDNDIKNLWNTRL 114 (325)
Q Consensus 56 R~RW~n~L~P~lkrg~WT~EED~~Ll~l~~~~G~kWs~IA~~LpGRT~nq~KnRW~t~l 114 (325)
.-||.|+|+|++++++||+|||++|++++.+||++|+.||+.| |||+++|||||+.+.
T Consensus 10 ~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L~ 67 (73)
T 2llk_A 10 GRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLMK 67 (73)
T ss_dssp ---------CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHCS
T ss_pred CcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHHH
Confidence 3589999999999999999999999999999999999999999 999999999998654
No 12
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.72 E-value=1.6e-18 Score=145.68 Aligned_cols=83 Identities=19% Similarity=0.404 Sum_probs=77.6
Q ss_pred cCCCCcCCCCHHHHHHHHHHHHHhCCCCccccccccc---ccccchhhhhhhhhhcC-----CCCCCC-CCChHHHHHHH
Q 041991 11 MEKMKRGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAG---ILRSGKSCRLRWMNYLR-----PDIKRG-PFAPEEVATII 81 (325)
Q Consensus 11 k~~lkKG~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg---~~Rt~kQCR~RW~n~L~-----P~lkrg-~WT~EED~~Ll 81 (325)
+...++++||+|||+.|+++|++||.++|..|++.+. .+|++.+|++||.|+|+ |.++++ +|+++|+.+|+
T Consensus 12 ~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~rv~ 91 (121)
T 2juh_A 12 SQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVL 91 (121)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHHHHH
Confidence 4788999999999999999999999999999999852 37999999999999998 999999 99999999999
Q ss_pred HHHHhhCCCHHH
Q 041991 82 QLHGLFGNKWAA 93 (325)
Q Consensus 82 ~l~~~~G~kWs~ 93 (325)
++|..|||+|++
T Consensus 92 ~~h~~~gn~~~~ 103 (121)
T 2juh_A 92 AAHAYWSQQQGK 103 (121)
T ss_dssp HHHHHHHHHHCC
T ss_pred HHHHHHccchhc
Confidence 999999999976
No 13
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.71 E-value=1.5e-17 Score=127.10 Aligned_cols=63 Identities=17% Similarity=0.171 Sum_probs=58.4
Q ss_pred cCCCCCCCCCChHHHHHHHHHHHhhCCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHhhcccCcC
Q 041991 63 LRPDIKRGPFAPEEVATIIQLHGLFGNKWAAIASHLPGRTDNDIKNLWNTRLKKHLQSMNHNLL 126 (325)
Q Consensus 63 L~P~lkrg~WT~EED~~Ll~l~~~~G~kWs~IA~~LpGRT~nq~KnRW~t~lkkkl~~~~~~~~ 126 (325)
++|++++++||+|||++|++++.+||++|..||.+|||||++|||+||+.++++.++. ++++.
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~-g~~~~ 65 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC-GLDKE 65 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS-CTTCC
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc-CCCCC
Confidence 5789999999999999999999999999999999999999999999999999998776 65544
No 14
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.71 E-value=6.8e-18 Score=142.05 Aligned_cols=80 Identities=19% Similarity=0.377 Sum_probs=73.7
Q ss_pred cCCCCcCCCCHHHHHHHHHHHHHhCCCCccccccccc---ccccchhhhhhhhhhc-----CCCCCCCCCChHH-HHHHH
Q 041991 11 MEKMKRGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAG---ILRSGKSCRLRWMNYL-----RPDIKRGPFAPEE-VATII 81 (325)
Q Consensus 11 k~~lkKG~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg---~~Rt~kQCR~RW~n~L-----~P~lkrg~WT~EE-D~~Ll 81 (325)
+...++++||+|||+.|+++|++||.|+|..|++.+. .+|++.||++||.|++ +|.++++.|+++| +.+|+
T Consensus 26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~v~ 105 (122)
T 2roh_A 26 GQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRVL 105 (122)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHHHH
Confidence 4567899999999999999999999999999998742 3799999999999999 8999999999999 89999
Q ss_pred HHHHhhCCC
Q 041991 82 QLHGLFGNK 90 (325)
Q Consensus 82 ~l~~~~G~k 90 (325)
++|..||++
T Consensus 106 ~~h~~~g~~ 114 (122)
T 2roh_A 106 AAQAYWSVD 114 (122)
T ss_dssp HHHHHHHSS
T ss_pred HHHHHHhhH
Confidence 999999985
No 15
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.69 E-value=1e-17 Score=123.44 Aligned_cols=57 Identities=23% Similarity=0.550 Sum_probs=54.2
Q ss_pred cCCCCcCCCCHHHHHHHHHHHHHhCCCCcccccccccccccchhhhhhhhhhcCCCCC
Q 041991 11 MEKMKRGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWMNYLRPDIK 68 (325)
Q Consensus 11 k~~lkKG~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCR~RW~n~L~P~lk 68 (325)
.+.+++++||+|||++|+++|.+||.++|..||+.++ +|+++|||.||.++|+|+++
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~i~ 59 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFP-NRTDQQCQYRWLRVLSGPSS 59 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCS-SSCHHHHHHHHHHTSCSSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcc-CCCHHHHHHHHHHHcCCccC
Confidence 4789999999999999999999999889999999998 89999999999999999986
No 16
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.69 E-value=9.7e-18 Score=120.27 Aligned_cols=52 Identities=38% Similarity=0.820 Sum_probs=49.7
Q ss_pred CCcCCCCHHHHHHHHHHHHHhCCCCcccccccccccccchhhhhhhhhhcCCC
Q 041991 14 MKRGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWMNYLRPD 66 (325)
Q Consensus 14 lkKG~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCR~RW~n~L~P~ 66 (325)
++||+||+|||++|+++|.+||.++|..||+.++ +|+++|||.||.+||+|+
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE 52 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTST-TCCHHHHHHHHHHTTSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcC-CCCHHHHHHHHHHHcCcC
Confidence 5899999999999999999999889999999997 899999999999999985
No 17
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=3.7e-17 Score=122.76 Aligned_cols=59 Identities=24% Similarity=0.322 Sum_probs=56.7
Q ss_pred hcCCCCCCCCCChHHHHHHHHHHHhhCCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHhhc
Q 041991 62 YLRPDIKRGPFAPEEVATIIQLHGLFGNKWAAIASHLPGRTDNDIKNLWNTRLKKHLQSM 121 (325)
Q Consensus 62 ~L~P~lkrg~WT~EED~~Ll~l~~~~G~kWs~IA~~LpGRT~nq~KnRW~t~lkkkl~~~ 121 (325)
||+|.+++++||.|||++|++++.+||++|..||+ |+|||++||++||+.+|++.+++.
T Consensus 2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~ 60 (66)
T 2din_A 2 SSGSSGKKTEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRD 60 (66)
T ss_dssp CCSSSSSCCCCCHHHHHHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHHHHHhChHhcCC
Confidence 79999999999999999999999999999999999 889999999999999999988764
No 18
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.67 E-value=1.7e-17 Score=118.83 Aligned_cols=52 Identities=27% Similarity=0.690 Sum_probs=48.5
Q ss_pred CCcCCCCHHHHHHHHHHHHHhCCCCcccccccccccccchhhhhhhhhhcCCC
Q 041991 14 MKRGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWMNYLRPD 66 (325)
Q Consensus 14 lkKG~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCR~RW~n~L~P~ 66 (325)
+++|+||+|||++|+++|.+||.++|..||+.++ +|+++|||.||.++|+|+
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPE 52 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTST-TCCHHHHHHHHHHHHSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcC-CCCHHHHHHHHHHHcCcC
Confidence 5799999999999999999999989999999998 899999999999999985
No 19
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.67 E-value=2.3e-17 Score=125.06 Aligned_cols=63 Identities=21% Similarity=0.337 Sum_probs=58.3
Q ss_pred cCCCCcCCCCHHHHHHHHHHHHHhCCCCcccccccccc-cccchhhhhhhhhhcCCCCCCCCCC
Q 041991 11 MEKMKRGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGI-LRSGKSCRLRWMNYLRPDIKRGPFA 73 (325)
Q Consensus 11 k~~lkKG~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~-~Rt~kQCR~RW~n~L~P~lkrg~WT 73 (325)
++..++++||+|||++|+++|.+||.++|..|++.+++ +|+++|||+||.++|+|.+.++..+
T Consensus 5 ~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~~ 68 (69)
T 1ity_A 5 HRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDSE 68 (69)
T ss_dssp TCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCCC
Confidence 46788999999999999999999998899999999975 7999999999999999999988764
No 20
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.63 E-value=9.2e-17 Score=120.80 Aligned_cols=57 Identities=21% Similarity=0.406 Sum_probs=50.2
Q ss_pred CCCCcCCCCHHHHHHHHHHHHHhCCCCcccccccccc-cccchhhhhhhhhhcCCCCC
Q 041991 12 EKMKRGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGI-LRSGKSCRLRWMNYLRPDIK 68 (325)
Q Consensus 12 ~~lkKG~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~-~Rt~kQCR~RW~n~L~P~lk 68 (325)
...+|++||+|||++|+++|++||.++|..|++.+++ +|+++|||+||.|+++|.++
T Consensus 7 ~~~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~glN 64 (64)
T 3sjm_A 7 NITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN 64 (64)
T ss_dssp ---CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCCC
Confidence 4468999999999999999999999999999998653 69999999999999999874
No 21
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.62 E-value=2.7e-16 Score=115.84 Aligned_cols=55 Identities=27% Similarity=0.428 Sum_probs=51.4
Q ss_pred CCCCCCCCCChHHHHHHHHHHHhhC-CCHHHHHhhCCCCCHHHHHHHHHHHHHHHH
Q 041991 64 RPDIKRGPFAPEEVATIIQLHGLFG-NKWAAIASHLPGRTDNDIKNLWNTRLKKHL 118 (325)
Q Consensus 64 ~P~lkrg~WT~EED~~Ll~l~~~~G-~kWs~IA~~LpGRT~nq~KnRW~t~lkkkl 118 (325)
.|.+++++||+|||++|++++.+|| ++|..||.+|+|||+.||++||+++|++.+
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i 58 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGPS 58 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCcc
Confidence 5789999999999999999999999 699999999999999999999999987643
No 22
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.60 E-value=1.1e-15 Score=109.46 Aligned_cols=50 Identities=28% Similarity=0.498 Sum_probs=46.2
Q ss_pred CCCCCCChHHHHHHHHHHHhhCC-CHHHHHhhCCCCCHHHHHHHHHHHHHH
Q 041991 67 IKRGPFAPEEVATIIQLHGLFGN-KWAAIASHLPGRTDNDIKNLWNTRLKK 116 (325)
Q Consensus 67 lkrg~WT~EED~~Ll~l~~~~G~-kWs~IA~~LpGRT~nq~KnRW~t~lkk 116 (325)
+++++||+|||++|++++.+||. +|..||++|+|||+.||++||+++|++
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP 51 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 57899999999999999999998 899999999999999999999999864
No 23
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.59 E-value=6.1e-16 Score=114.35 Aligned_cols=55 Identities=18% Similarity=0.529 Sum_probs=51.7
Q ss_pred CCCCcCCCCHHHHHHHHHHHHHhCCCCcccccccccccccchhhhhhhhhhcCCCC
Q 041991 12 EKMKRGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWMNYLRPDI 67 (325)
Q Consensus 12 ~~lkKG~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCR~RW~n~L~P~l 67 (325)
+.+++++||+|||++|+++|++||.++|..||+.++ +|+++|||.||.+||.+..
T Consensus 4 ~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~r~~~~l~~~~ 58 (60)
T 1x41_A 4 GSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMC-TKTKEECEKHYMKYFSGPS 58 (60)
T ss_dssp CCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHT-TSCHHHHHHHHHHHTTCSS
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhC-CCCHHHHHHHHHHHccCCC
Confidence 678999999999999999999999889999999998 8999999999999998753
No 24
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.59 E-value=2.1e-15 Score=114.21 Aligned_cols=60 Identities=27% Similarity=0.295 Sum_probs=54.9
Q ss_pred hcCCCCCCCCCChHHHHHHHHHHHhhC-CCHHHHHhhCC--CCCHHHHHHHHHHHHHHHHhhc
Q 041991 62 YLRPDIKRGPFAPEEVATIIQLHGLFG-NKWAAIASHLP--GRTDNDIKNLWNTRLKKHLQSM 121 (325)
Q Consensus 62 ~L~P~lkrg~WT~EED~~Ll~l~~~~G-~kWs~IA~~Lp--GRT~nq~KnRW~t~lkkkl~~~ 121 (325)
...+..++++||+|||++|+++|.+|| ++|..||.+|+ |||+.||++||+++|++.+.+.
T Consensus 3 ~~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~ 65 (69)
T 1ity_A 3 EKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISS 65 (69)
T ss_dssp CTTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCC
Confidence 456778999999999999999999999 69999999999 9999999999999999876553
No 25
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.58 E-value=6.8e-16 Score=111.25 Aligned_cols=50 Identities=26% Similarity=0.473 Sum_probs=47.1
Q ss_pred CcCCCCHHHHHHHHHHHHHhCCCCcccccccccc-cccchhhhhhhhhhcC
Q 041991 15 KRGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGI-LRSGKSCRLRWMNYLR 64 (325)
Q Consensus 15 kKG~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~-~Rt~kQCR~RW~n~L~ 64 (325)
++|+||+|||++|+++|.+||.++|..|++.+++ +|+++||++||.++++
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence 5899999999999999999998899999999975 5999999999999986
No 26
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.57 E-value=2.1e-15 Score=108.08 Aligned_cols=50 Identities=32% Similarity=0.737 Sum_probs=46.9
Q ss_pred CCCCCCChHHHHHHHHHHHhhCC-CHHHHHhhCCCCCHHHHHHHHHHHHHH
Q 041991 67 IKRGPFAPEEVATIIQLHGLFGN-KWAAIASHLPGRTDNDIKNLWNTRLKK 116 (325)
Q Consensus 67 lkrg~WT~EED~~Ll~l~~~~G~-kWs~IA~~LpGRT~nq~KnRW~t~lkk 116 (325)
+++++||+|||++|++++.+||. +|..||.+|+|||+.||++||+++|++
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP 51 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 57899999999999999999997 699999999999999999999998863
No 27
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.57 E-value=3.4e-15 Score=107.57 Aligned_cols=50 Identities=28% Similarity=0.387 Sum_probs=46.7
Q ss_pred CCCCCChHHHHHHHHHHHhhC-CCHHHHHhhCC--CCCHHHHHHHHHHHHHHH
Q 041991 68 KRGPFAPEEVATIIQLHGLFG-NKWAAIASHLP--GRTDNDIKNLWNTRLKKH 117 (325)
Q Consensus 68 krg~WT~EED~~Ll~l~~~~G-~kWs~IA~~Lp--GRT~nq~KnRW~t~lkkk 117 (325)
++++||+|||++|+++|.+|| ++|..||..|+ |||+.||++||+++++.+
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k~k 53 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLK 53 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHTC-
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHccC
Confidence 579999999999999999999 69999999999 999999999999998753
No 28
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=2.7e-15 Score=113.77 Aligned_cols=57 Identities=23% Similarity=0.358 Sum_probs=53.2
Q ss_pred CCCCCCCCCChHHHHHHHHHHHhhC-CCHHHHHhhCCCCCHHHHHHHHHHHHHHHHhh
Q 041991 64 RPDIKRGPFAPEEVATIIQLHGLFG-NKWAAIASHLPGRTDNDIKNLWNTRLKKHLQS 120 (325)
Q Consensus 64 ~P~lkrg~WT~EED~~Ll~l~~~~G-~kWs~IA~~LpGRT~nq~KnRW~t~lkkkl~~ 120 (325)
.|.+++++||+|||++|+++|.+|| ++|..||.+|+|||+.||++||+++|++.+++
T Consensus 4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~ 61 (70)
T 2dim_A 4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKK 61 (70)
T ss_dssp CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccC
Confidence 4788999999999999999999999 79999999999999999999999999876654
No 29
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.55 E-value=5.9e-15 Score=109.05 Aligned_cols=52 Identities=10% Similarity=0.234 Sum_probs=49.1
Q ss_pred CCCCCCCCCChHHHHHHHHHHHhhC-CCHHHHHhhCCCCCHHHHHHHHHHHHH
Q 041991 64 RPDIKRGPFAPEEVATIIQLHGLFG-NKWAAIASHLPGRTDNDIKNLWNTRLK 115 (325)
Q Consensus 64 ~P~lkrg~WT~EED~~Ll~l~~~~G-~kWs~IA~~LpGRT~nq~KnRW~t~lk 115 (325)
.+.+++++||+|||++|++++.+|| ++|..||++|+|||+.||++||+++|.
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~ 55 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFS 55 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHcc
Confidence 4678999999999999999999999 799999999999999999999998876
No 30
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=6.2e-16 Score=116.07 Aligned_cols=58 Identities=24% Similarity=0.357 Sum_probs=53.4
Q ss_pred cCCCCcCCCCHHHHHHHHHHHHHhCCCCcccccccccccccchhhhhhhhhhcCCCCCCCC
Q 041991 11 MEKMKRGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWMNYLRPDIKRGP 71 (325)
Q Consensus 11 k~~lkKG~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCR~RW~n~L~P~lkrg~ 71 (325)
.|.+++++||+|||++|+++|++||. +|..||+ ++ +|+++|||.||.++|+|.++++.
T Consensus 4 ~P~~~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~-~~-gRt~~qcr~Rw~~~l~~~~~~~~ 61 (66)
T 2din_A 4 GSSGKKTEWSREEEEKLLHLAKLMPT-QWRTIAP-II-GRTAAQCLEHYEFLLDKAAQRDS 61 (66)
T ss_dssp SSSSSCCCCCHHHHHHHHHHHHHCTT-CHHHHHH-HH-SSCHHHHHHHHHHHHHHHHHSSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCC-CHHHHhc-cc-CcCHHHHHHHHHHHhChHhcCCC
Confidence 58899999999999999999999998 9999999 65 69999999999999999876653
No 31
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=1.3e-15 Score=116.92 Aligned_cols=61 Identities=21% Similarity=0.309 Sum_probs=56.3
Q ss_pred cCCCCcCCCCHHHHHHHHHHHHHhCC-----CCcccccccccccccchhhhhhhhhhcCCCCCCCCC
Q 041991 11 MEKMKRGVWSPEEDAKLIQYIKEHGH-----GTWRHLPKQAGILRSGKSCRLRWMNYLRPDIKRGPF 72 (325)
Q Consensus 11 k~~lkKG~WT~EEDe~L~~lV~k~G~-----~nW~~IAk~lg~~Rt~kQCR~RW~n~L~P~lkrg~W 72 (325)
++.+++++||+|||++|+++|.+||. .+|..||+.|+ +|+.+|||.||++||.+.++.|..
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~-~Rt~~qcr~r~~~~l~~~~k~g~~ 68 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELG-NRTAKQVASQVQKYFIKLTKAGIP 68 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHS-SSCHHHHHHHHHHHHGGGSTTCSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhcCCC
Confidence 58899999999999999999999996 68999999998 899999999999999998877643
No 32
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.54 E-value=2.8e-15 Score=110.29 Aligned_cols=52 Identities=21% Similarity=0.457 Sum_probs=47.9
Q ss_pred CCCCcCCCCHHHHHHHHHHHHHhCCCCcccccccccccccchhhhhhhhhhc
Q 041991 12 EKMKRGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWMNYL 63 (325)
Q Consensus 12 ~~lkKG~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCR~RW~n~L 63 (325)
..+.+++||+|||++|+++|++||.++|..||+.++.+|+++|||.||.+++
T Consensus 5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 3466899999999999999999998899999999986799999999999986
No 33
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=8e-15 Score=112.46 Aligned_cols=57 Identities=19% Similarity=0.228 Sum_probs=52.9
Q ss_pred CCCCCCCCCChHHHHHHHHHHHhhC------CCHHHHHhhCCCCCHHHHHHHHHHHHHHHHhh
Q 041991 64 RPDIKRGPFAPEEVATIIQLHGLFG------NKWAAIASHLPGRTDNDIKNLWNTRLKKHLQS 120 (325)
Q Consensus 64 ~P~lkrg~WT~EED~~Ll~l~~~~G------~kWs~IA~~LpGRT~nq~KnRW~t~lkkkl~~ 120 (325)
+|.+++++||+|||++|++++.+|| ++|..||.+|+|||+.||++||+.+|++.++.
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~ 65 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKA 65 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhc
Confidence 5789999999999999999999999 78999999999999999999999999876543
No 34
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=99.25 E-value=1.6e-15 Score=120.78 Aligned_cols=57 Identities=23% Similarity=0.259 Sum_probs=53.7
Q ss_pred hhcCCCCCCCCCChHHHHHHHHHHHhhCCCHHHHHhhCCCCCHHHHHHHHHHHHHHH
Q 041991 61 NYLRPDIKRGPFAPEEVATIIQLHGLFGNKWAAIASHLPGRTDNDIKNLWNTRLKKH 117 (325)
Q Consensus 61 n~L~P~lkrg~WT~EED~~Ll~l~~~~G~kWs~IA~~LpGRT~nq~KnRW~t~lkkk 117 (325)
..+.|.+++++||.|||++|++++.+||++|..||.+|+|||++||++||++++++.
T Consensus 8 ~~~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~ 64 (89)
T 2ltp_A 8 SSGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQ 64 (89)
Confidence 357789999999999999999999999999999999999999999999999998864
No 35
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.50 E-value=2.8e-14 Score=107.22 Aligned_cols=52 Identities=29% Similarity=0.453 Sum_probs=46.9
Q ss_pred CCCCCCChHHHHHHHHHHHhhC-CCHHHHHhhCC--CCCHHHHHHHHHHHHHHHH
Q 041991 67 IKRGPFAPEEVATIIQLHGLFG-NKWAAIASHLP--GRTDNDIKNLWNTRLKKHL 118 (325)
Q Consensus 67 lkrg~WT~EED~~Ll~l~~~~G-~kWs~IA~~Lp--GRT~nq~KnRW~t~lkkkl 118 (325)
.++++||+|||++|+++|.+|| .+|..||++++ |||+.||++||++++|..+
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~gl 63 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 63 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCC
Confidence 5789999999999999999999 58999999966 9999999999999988643
No 36
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.49 E-value=6.6e-15 Score=112.43 Aligned_cols=57 Identities=19% Similarity=0.281 Sum_probs=53.8
Q ss_pred cCCCCcCCCCHHHHHHHHHHHHHhCCCCcccccccccccccchhhhhhhhhhcCCCCCC
Q 041991 11 MEKMKRGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWMNYLRPDIKR 69 (325)
Q Consensus 11 k~~lkKG~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCR~RW~n~L~P~lkr 69 (325)
.+.+++++||+|||++|+++|.+||. +|..||+.++ +|+..||+.||.+||++.++.
T Consensus 4 ~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~~~~-~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 4 GSSGYSVKWTIEEKELFEQGLAKFGR-RWTKISKLIG-SRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp CCSSCCCCCCHHHHHHHHHHHHHTCS-CHHHHHHHHS-SSCHHHHHHHHHHHHHHHSCS
T ss_pred CCCcCCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcC-CCCHHHHHHHHHHHHHHHHhc
Confidence 57899999999999999999999998 9999999998 899999999999999887766
No 37
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.47 E-value=2.7e-14 Score=117.28 Aligned_cols=79 Identities=24% Similarity=0.437 Sum_probs=69.5
Q ss_pred cCCCCcCCCCHHHHHHHHHHHHHhCCCCccccccccc---ccccchhhhhhhhhhc-----CCCCCCCCCChHHHHH-HH
Q 041991 11 MEKMKRGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAG---ILRSGKSCRLRWMNYL-----RPDIKRGPFAPEEVAT-II 81 (325)
Q Consensus 11 k~~lkKG~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg---~~Rt~kQCR~RW~n~L-----~P~lkrg~WT~EED~~-Ll 81 (325)
+...++++||+|||+.|+++|++||.++|..|++.++ .+|++.+|++||.|++ +|.+++|.-+++|-.. ++
T Consensus 8 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l~rv~ 87 (105)
T 2aje_A 8 PQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLNRVL 87 (105)
T ss_dssp -CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCcccccCCCCCHHHHHHHH
Confidence 5778999999999999999999999999999999762 3799999999999999 6999999888887765 88
Q ss_pred HHHHhhCC
Q 041991 82 QLHGLFGN 89 (325)
Q Consensus 82 ~l~~~~G~ 89 (325)
+++..+|+
T Consensus 88 ~~~~~~~~ 95 (105)
T 2aje_A 88 NAHGYWTQ 95 (105)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887663
No 38
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.47 E-value=6.2e-14 Score=103.02 Aligned_cols=50 Identities=18% Similarity=0.310 Sum_probs=46.4
Q ss_pred CCCCCCCCChHHHHHHHHHHHhhC-CCHHHHHhhCC-CCCHHHHHHHHHHHH
Q 041991 65 PDIKRGPFAPEEVATIIQLHGLFG-NKWAAIASHLP-GRTDNDIKNLWNTRL 114 (325)
Q Consensus 65 P~lkrg~WT~EED~~Ll~l~~~~G-~kWs~IA~~Lp-GRT~nq~KnRW~t~l 114 (325)
..+.+++||+|||++|++++.+|| ++|..||++|+ |||+.||++||++++
T Consensus 5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 356789999999999999999999 89999999999 999999999998764
No 39
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.47 E-value=4.3e-14 Score=111.51 Aligned_cols=69 Identities=22% Similarity=0.488 Sum_probs=61.1
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCccccccc----ccccccchhhhhhhhhhc-----CCCCCCC-CCChHHHHHHHHHHHh
Q 041991 17 GVWSPEEDAKLIQYIKEHGHGTWRHLPKQ----AGILRSGKSCRLRWMNYL-----RPDIKRG-PFAPEEVATIIQLHGL 86 (325)
Q Consensus 17 G~WT~EEDe~L~~lV~k~G~~nW~~IAk~----lg~~Rt~kQCR~RW~n~L-----~P~lkrg-~WT~EED~~Ll~l~~~ 86 (325)
++||+|||+.|+++|++||.|+|..|++. ++ +|++++|++||.|+| .|.+++| +...+...+++.++..
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~-~RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a~ 79 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNAD-HRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAY 79 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCT-TSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccC-CCCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHHH
Confidence 58999999999999999999999999985 55 799999999999998 6877776 6777777889998865
No 40
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.41 E-value=1.3e-13 Score=107.61 Aligned_cols=60 Identities=17% Similarity=0.353 Sum_probs=53.3
Q ss_pred CCCCCcccccCCCCcCCCCHHHHHHHHHHHHHhCCCCcccccccccccccchhhhhhhhhhc
Q 041991 2 GKRKTPFCDMEKMKRGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWMNYL 63 (325)
Q Consensus 2 G~~R~~~cdk~~lkKG~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCR~RW~n~L 63 (325)
|..+...+.+....+++||+|||++|+++|++|| ++|..||+.++ +|+..||+.||.++.
T Consensus 4 g~~~~~~~~~~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~v~-~RT~~qcr~r~~~~~ 63 (79)
T 2yus_A 4 GSSGTLAKSKGASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVG-SRTQDECILHFLRLP 63 (79)
T ss_dssp SSSCCCCCCCSSCCSCCCCHHHHHHHHHHHHHSS-SCHHHHHHHHS-SCCHHHHHHHHTTSC
T ss_pred cccCccCCccccccCCCcCHHHHHHHHHHHHHhC-CCHHHHHHHcC-CCCHHHHHHHHHHhc
Confidence 4445455677888999999999999999999999 69999999998 799999999999983
No 41
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.38 E-value=3.8e-13 Score=103.69 Aligned_cols=52 Identities=13% Similarity=0.289 Sum_probs=48.1
Q ss_pred CCCCCCCCCChHHHHHHHHHHHhhC----CCHHHHHhhCCCCCHHHHHHHHHHHHH
Q 041991 64 RPDIKRGPFAPEEVATIIQLHGLFG----NKWAAIASHLPGRTDNDIKNLWNTRLK 115 (325)
Q Consensus 64 ~P~lkrg~WT~EED~~Ll~l~~~~G----~kWs~IA~~LpGRT~nq~KnRW~t~lk 115 (325)
++.+.+++||.+||++|++++.+|| ++|.+||.+|||||.++|++||+.+++
T Consensus 13 ~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 13 RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVS 68 (73)
T ss_dssp TTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred ccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 3567889999999999999999999 789999999999999999999998875
No 42
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.38 E-value=2.1e-13 Score=105.21 Aligned_cols=58 Identities=22% Similarity=0.359 Sum_probs=48.4
Q ss_pred ccccCCCCcCCCCHHHHHHHHHHHHHhCCCCcccccccccccccchhhhhhhhhhcCCCCCC
Q 041991 8 FCDMEKMKRGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWMNYLRPDIKR 69 (325)
Q Consensus 8 ~cdk~~lkKG~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCR~RW~n~L~P~lkr 69 (325)
-...|.+++|+||+|||++|+++|++||. .|..||+.+ +|+++||+.||.. |....+.
T Consensus 15 ~~ldP~i~k~~wT~EED~~L~~l~~~~G~-kW~~IA~~l--gRt~~q~knRw~~-L~~~~~~ 72 (73)
T 2llk_A 15 YFQGDRNHVGKYTPEEIEKLKELRIKHGN-DWATIGAAL--GRSASSVKDRCRL-MKDTCNT 72 (73)
T ss_dssp ----CCCCCCSSCHHHHHHHHHHHHHHSS-CHHHHHHHH--TSCHHHHHHHHHH-CSCCCSC
T ss_pred eecCCCCCCCCCCHHHHHHHHHHHHHHCC-CHHHHHHHh--CCCHHHHHHHHHH-HHHHccC
Confidence 34579999999999999999999999998 699999999 6999999999974 5555444
No 43
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.38 E-value=2e-13 Score=114.87 Aligned_cols=82 Identities=20% Similarity=0.309 Sum_probs=61.2
Q ss_pred cCCCCcCCCCHHHHHHHHHHHHHhCCCCcccccccccccccchhhhhhhhhhcCCCCCCCCCChHHHHHHHHHHHhhCCC
Q 041991 11 MEKMKRGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWMNYLRPDIKRGPFAPEEVATIIQLHGLFGNK 90 (325)
Q Consensus 11 k~~lkKG~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCR~RW~n~L~P~lkrg~WT~EED~~Ll~l~~~~G~k 90 (325)
.+.+++|+||+|||++|+++|.+||. +|..|++.++ +|++.||+.||.++|++.++.++|+.+-- ......+.+
T Consensus 49 ~p~~~~~~Wt~eEd~~L~~~~~~~G~-~W~~Ia~~l~-gRt~~~~k~rw~~~l~~~~~~~~~~~~~~----~p~~~kk~~ 122 (131)
T 3zqc_A 49 DPAVVKHAWTPEEDETIFRNYLKLGS-KWSVIAKLIP-GRTDNAIKNRWNSSISKRISTNSNHKEIL----LPDRSKKRK 122 (131)
T ss_dssp STTCCCSCCCHHHHHHHHHHHHHSCS-CHHHHTTTST-TCCHHHHHHHHHHTTGGGCCCCTTSCCCC----CCCCC----
T ss_pred CccccCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcC-CCCHHHHHHHHHHHHHHHhhcCCCccccc----Cchhhhhhh
Confidence 67899999999999999999999997 9999999998 89999999999999999999999887631 011222456
Q ss_pred HHHHHhhC
Q 041991 91 WAAIASHL 98 (325)
Q Consensus 91 Ws~IA~~L 98 (325)
|+.|++.|
T Consensus 123 ~~~i~k~~ 130 (131)
T 3zqc_A 123 AADVPKKL 130 (131)
T ss_dssp --------
T ss_pred hhhcchhc
Confidence 88877765
No 44
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.31 E-value=1.2e-12 Score=102.23 Aligned_cols=48 Identities=10% Similarity=0.293 Sum_probs=45.0
Q ss_pred CCCCCCCChHHHHHHHHHHHhhCCCHHHHHhhCCCCCHHHHHHHHHHH
Q 041991 66 DIKRGPFAPEEVATIIQLHGLFGNKWAAIASHLPGRTDNDIKNLWNTR 113 (325)
Q Consensus 66 ~lkrg~WT~EED~~Ll~l~~~~G~kWs~IA~~LpGRT~nq~KnRW~t~ 113 (325)
...+++||+|||++|++++.+||++|..||++|++||+.||++||+.+
T Consensus 15 ~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 15 ASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL 62 (79)
T ss_dssp SCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred cccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence 456889999999999999999999999999999999999999999755
No 45
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.30 E-value=5.6e-12 Score=99.42 Aligned_cols=49 Identities=24% Similarity=0.503 Sum_probs=45.6
Q ss_pred CCCChHHHHHHHHHHHhhCC-CHHHHHhh----CCCCCHHHHHHHHHHHHHHHH
Q 041991 70 GPFAPEEVATIIQLHGLFGN-KWAAIASH----LPGRTDNDIKNLWNTRLKKHL 118 (325)
Q Consensus 70 g~WT~EED~~Ll~l~~~~G~-kWs~IA~~----LpGRT~nq~KnRW~t~lkkkl 118 (325)
++||+|||+.|++++.+||. +|+.|++. |+|||+++||+||++++++..
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~ 54 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTAS 54 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhcc
Confidence 48999999999999999997 99999996 899999999999999998654
No 46
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.30 E-value=2.1e-12 Score=108.07 Aligned_cols=54 Identities=24% Similarity=0.492 Sum_probs=49.8
Q ss_pred CCCCCCCCCChHHHHHHHHHHHhhCCCHHHHHhhCCCCCHHHHHHHHHHHHHHH
Q 041991 64 RPDIKRGPFAPEEVATIIQLHGLFGNKWAAIASHLPGRTDNDIKNLWNTRLKKH 117 (325)
Q Consensus 64 ~P~lkrg~WT~EED~~Ll~l~~~~G~kWs~IA~~LpGRT~nq~KnRW~t~lkkk 117 (325)
.+..++|+||+|||++|++++.+||.+|..||..|+|||..||+.||+++|...
T Consensus 6 ~~~~kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~ 59 (126)
T 3osg_A 6 LKAAKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYLAPS 59 (126)
T ss_dssp -CBCSSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHHTSTT
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhhcccc
Confidence 456889999999999999999999999999999999999999999999988643
No 47
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.30 E-value=1.7e-12 Score=104.92 Aligned_cols=50 Identities=32% Similarity=0.761 Sum_probs=47.0
Q ss_pred CCCCCCCChHHHHHHHHHHHhhCC-CHHHHHhhCCCCCHHHHHHHHHHHHH
Q 041991 66 DIKRGPFAPEEVATIIQLHGLFGN-KWAAIASHLPGRTDNDIKNLWNTRLK 115 (325)
Q Consensus 66 ~lkrg~WT~EED~~Ll~l~~~~G~-kWs~IA~~LpGRT~nq~KnRW~t~lk 115 (325)
++++|+||+|||++|++++.+||. +|..||..|||||..||++||..+|.
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~ 51 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLN 51 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTC
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccC
Confidence 478999999999999999999997 69999999999999999999998875
No 48
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=98.93 E-value=3.6e-13 Score=107.10 Aligned_cols=53 Identities=23% Similarity=0.485 Sum_probs=50.2
Q ss_pred cCCCCcCCCCHHHHHHHHHHHHHhCCCCcccccccccccccchhhhhhhhhhcCC
Q 041991 11 MEKMKRGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWMNYLRP 65 (325)
Q Consensus 11 k~~lkKG~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCR~RW~n~L~P 65 (325)
.+.+++|+||+|||++|+++|.+||. +|..||+.++ +|+..||+.||.++|+.
T Consensus 11 ~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~IA~~l~-gRt~~q~k~r~~~~lrk 63 (89)
T 2ltp_A 11 RENLYFQGWTEEEMGTAKKGLLEHGR-NWSAIARMVG-SKTVSQCKNFYFNYKKR 63 (89)
Confidence 57899999999999999999999998 8999999998 89999999999999874
No 49
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.27 E-value=8.6e-12 Score=102.40 Aligned_cols=55 Identities=25% Similarity=0.430 Sum_probs=49.1
Q ss_pred CCCCCCCCCChHHHHHHHHHHHhhCC-CHHHHHhhC----CCCCHHHHHHHHHHHHHHHH
Q 041991 64 RPDIKRGPFAPEEVATIIQLHGLFGN-KWAAIASHL----PGRTDNDIKNLWNTRLKKHL 118 (325)
Q Consensus 64 ~P~lkrg~WT~EED~~Ll~l~~~~G~-kWs~IA~~L----pGRT~nq~KnRW~t~lkkkl 118 (325)
.+..++++||.|||+.|+++|.+||. +|+.|++.+ +|||+.+||+||++++++..
T Consensus 8 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~ 67 (105)
T 2aje_A 8 PQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAK 67 (105)
T ss_dssp -CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTT
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhcc
Confidence 34678899999999999999999997 999999975 89999999999999998643
No 50
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.26 E-value=5.7e-12 Score=94.24 Aligned_cols=49 Identities=24% Similarity=0.419 Sum_probs=45.8
Q ss_pred CCCCCChHHHHHHHHHHHhhCCCHHHHH---hhCCCCCHHHHHHHHHHHHHH
Q 041991 68 KRGPFAPEEVATIIQLHGLFGNKWAAIA---SHLPGRTDNDIKNLWNTRLKK 116 (325)
Q Consensus 68 krg~WT~EED~~Ll~l~~~~G~kWs~IA---~~LpGRT~nq~KnRW~t~lkk 116 (325)
++.+||+|||+.|+++|++||.+|..|+ .++++||+.+||+||+++.|+
T Consensus 7 ~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~ 58 (62)
T 1x58_A 7 GRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISG 58 (62)
T ss_dssp CSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHhc
Confidence 5789999999999999999999999999 567999999999999998874
No 51
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.26 E-value=7e-12 Score=105.29 Aligned_cols=56 Identities=25% Similarity=0.461 Sum_probs=51.0
Q ss_pred cCCCCCCCCCChHHHHHHHHHHHhhCC-CHHHHHhh----CCCCCHHHHHHHHHHHHHHHH
Q 041991 63 LRPDIKRGPFAPEEVATIIQLHGLFGN-KWAAIASH----LPGRTDNDIKNLWNTRLKKHL 118 (325)
Q Consensus 63 L~P~lkrg~WT~EED~~Ll~l~~~~G~-kWs~IA~~----LpGRT~nq~KnRW~t~lkkkl 118 (325)
+.+..++++||.|||+.|+++|.+||. +|+.|++. |+|||+++||+||+++++...
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~ 71 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTAS 71 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhc
Confidence 456788999999999999999999997 99999998 499999999999999998643
No 52
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.26 E-value=8.6e-12 Score=100.29 Aligned_cols=59 Identities=15% Similarity=0.371 Sum_probs=50.4
Q ss_pred CCCCCChHHHHHHHHHHHhhC----CCHHHHHhhCCCCCHHHHHHHHHHHHHHH-HhhcccCcC
Q 041991 68 KRGPFAPEEVATIIQLHGLFG----NKWAAIASHLPGRTDNDIKNLWNTRLKKH-LQSMNHNLL 126 (325)
Q Consensus 68 krg~WT~EED~~Ll~l~~~~G----~kWs~IA~~LpGRT~nq~KnRW~t~lkkk-l~~~~~~~~ 126 (325)
.+++||.|||++|++++.+|| ++|.+||.+|||||.++|++||+.++... ..+.|..|.
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv~~iesg~vp~ 70 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIESGKVPF 70 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhcCCCCC
Confidence 367999999999999999996 67999999999999999999999988764 455555543
No 53
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.25 E-value=2.7e-12 Score=118.63 Aligned_cols=55 Identities=24% Similarity=0.410 Sum_probs=49.0
Q ss_pred CCCCCCCCChHHHHHHHHHHHhhCCC------HHHHHhhCCCCCHHHHHHHHHHHHHHHHh
Q 041991 65 PDIKRGPFAPEEVATIIQLHGLFGNK------WAAIASHLPGRTDNDIKNLWNTRLKKHLQ 119 (325)
Q Consensus 65 P~lkrg~WT~EED~~Ll~l~~~~G~k------Ws~IA~~LpGRT~nq~KnRW~t~lkkkl~ 119 (325)
+.+++++||+|||++|+++|.+||++ |..||++|||||+++||+||+++|++++.
T Consensus 4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln 64 (246)
T 1ign_A 4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLE 64 (246)
T ss_dssp ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcc
Confidence 46789999999999999999999986 99999999999999999999999999875
No 54
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.24 E-value=1.9e-12 Score=99.74 Aligned_cols=55 Identities=11% Similarity=0.286 Sum_probs=50.2
Q ss_pred cccCCCCcCCCCHHHHHHHHHHHHHhCC---CCcccccccccccccchhhhhhhhhhcC
Q 041991 9 CDMEKMKRGVWSPEEDAKLIQYIKEHGH---GTWRHLPKQAGILRSGKSCRLRWMNYLR 64 (325)
Q Consensus 9 cdk~~lkKG~WT~EEDe~L~~lV~k~G~---~nW~~IAk~lg~~Rt~kQCR~RW~n~L~ 64 (325)
.++....+++||+|||++|+++|.+||. .+|..||+.|+ +|+.+||+.||.+++.
T Consensus 11 ~~~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vp-GRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 11 KERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVP-SKSKEDCIARYKLLVS 68 (73)
T ss_dssp CCTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCS-SSCHHHHHHHHHHHHS
T ss_pred ccccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 4677889999999999999999999993 48999999998 8999999999998875
No 55
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.18 E-value=1.5e-11 Score=100.04 Aligned_cols=48 Identities=23% Similarity=0.431 Sum_probs=45.2
Q ss_pred CCCCChHHHHHHHHHHHhhCC-CHHHHHhhCCCCCHHHHHHHHHHHHHH
Q 041991 69 RGPFAPEEVATIIQLHGLFGN-KWAAIASHLPGRTDNDIKNLWNTRLKK 116 (325)
Q Consensus 69 rg~WT~EED~~Ll~l~~~~G~-kWs~IA~~LpGRT~nq~KnRW~t~lkk 116 (325)
+|+||+|||++|++++.+||. +|..||..|||||..||+.||.++|.+
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p 49 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINP 49 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSSS
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHcc
Confidence 589999999999999999996 799999999999999999999988864
No 56
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.16 E-value=6.9e-11 Score=99.38 Aligned_cols=54 Identities=24% Similarity=0.447 Sum_probs=48.6
Q ss_pred CCCCCCCCChHHHHHHHHHHHhhCC-CHHHHHhh----CCCCCHHHHHHHHHHHHHHHH
Q 041991 65 PDIKRGPFAPEEVATIIQLHGLFGN-KWAAIASH----LPGRTDNDIKNLWNTRLKKHL 118 (325)
Q Consensus 65 P~lkrg~WT~EED~~Ll~l~~~~G~-kWs~IA~~----LpGRT~nq~KnRW~t~lkkkl 118 (325)
...++++||.|||+.|++++.+||. +|+.|++. |+|||+.+||+||+++++..-
T Consensus 27 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~ 85 (122)
T 2roh_A 27 QRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTAS 85 (122)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhcc
Confidence 3457899999999999999999997 99999987 489999999999999998654
No 57
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=99.02 E-value=5.8e-10 Score=89.67 Aligned_cols=66 Identities=15% Similarity=0.210 Sum_probs=60.3
Q ss_pred chhhhhhhhhhcCCCCCCCCCChHHHHHHHHHHHhhCCCHHHHHhhC-----CCCCHHHHHHHHHHHHHHHHhhc
Q 041991 52 GKSCRLRWMNYLRPDIKRGPFAPEEVATIIQLHGLFGNKWAAIASHL-----PGRTDNDIKNLWNTRLKKHLQSM 121 (325)
Q Consensus 52 ~kQCR~RW~n~L~P~lkrg~WT~EED~~Ll~l~~~~G~kWs~IA~~L-----pGRT~nq~KnRW~t~lkkkl~~~ 121 (325)
..-+.++|.++|.+ ++||.||+..|++|+++||.+|..|+..+ ++||..+||+||..+.++.++..
T Consensus 17 ~~yt~eeY~~~L~~----~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r 87 (93)
T 3hm5_A 17 PVYSEQEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR 87 (93)
T ss_dssp CCCCHHHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred CccCHHHHHHHcCC----CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 35678999999987 89999999999999999999999999999 58999999999999999877664
No 58
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.97 E-value=8.6e-10 Score=81.65 Aligned_cols=48 Identities=15% Similarity=0.027 Sum_probs=44.3
Q ss_pred CCCCCChHHHHHHHHHHHhhCCCHHHHHhhCCCCCHHHHHHHHHHHHH
Q 041991 68 KRGPFAPEEVATIIQLHGLFGNKWAAIASHLPGRTDNDIKNLWNTRLK 115 (325)
Q Consensus 68 krg~WT~EED~~Ll~l~~~~G~kWs~IA~~LpGRT~nq~KnRW~t~lk 115 (325)
..++||+||++++++++.+||.+|..||..||+||..+|.++|....|
T Consensus 11 ~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~Kk 58 (61)
T 2eqr_A 11 FMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTKK 58 (61)
T ss_dssp CCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHHTC
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhcC
Confidence 457999999999999999999999999999999999999999976554
No 59
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.96 E-value=6.5e-10 Score=85.36 Aligned_cols=59 Identities=17% Similarity=0.198 Sum_probs=49.8
Q ss_pred CCCCCCCChHHHHHHHHHHHhhC----CCHHHHHhhCCCCCHHHHHHHHHHHHHHHHhhcccCc
Q 041991 66 DIKRGPFAPEEVATIIQLHGLFG----NKWAAIASHLPGRTDNDIKNLWNTRLKKHLQSMNHNL 125 (325)
Q Consensus 66 ~lkrg~WT~EED~~Ll~l~~~~G----~kWs~IA~~LpGRT~nq~KnRW~t~lkkkl~~~~~~~ 125 (325)
..+.+.||.||+++|.+++.+|+ ++|.+||.++ |||.++|++||+.+.+......|..+
T Consensus 5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d~~~~~G~vp 67 (72)
T 2cqq_A 5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDSVTCSPGMVS 67 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHSCCCCSCCCS
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHhcCccCCCCC
Confidence 35678999999999999999997 6799999998 99999999999998776544444443
No 60
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=98.91 E-value=3e-10 Score=91.27 Aligned_cols=49 Identities=10% Similarity=0.245 Sum_probs=43.4
Q ss_pred CCcCCCCHHHHHHHHHHHHHhCC---CCcccccccccccccchhhhhhhhhhc
Q 041991 14 MKRGVWSPEEDAKLIQYIKEHGH---GTWRHLPKQAGILRSGKSCRLRWMNYL 63 (325)
Q Consensus 14 lkKG~WT~EEDe~L~~lV~k~G~---~nW~~IAk~lg~~Rt~kQCR~RW~n~L 63 (325)
..+++||+|||++|.+++.+||. ..|..||+.++ +|+.+||+.||.+++
T Consensus 6 ~~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vp-GRT~~q~k~ry~~l~ 57 (93)
T 2cjj_A 6 GSGRPWSAKENKAFERALAVYDKDTPDRWANVARAVE-GRTPEEVKKHYEILV 57 (93)
T ss_dssp --CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHST-TCCHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 34789999999999999999973 46999999998 899999999999875
No 61
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.72 E-value=6.1e-09 Score=77.85 Aligned_cols=50 Identities=16% Similarity=0.194 Sum_probs=44.6
Q ss_pred CCcCCCCHHHHHHHHHHHHHhCCCCcccccc---cccccccchhhhhhhhhhcCC
Q 041991 14 MKRGVWSPEEDAKLIQYIKEHGHGTWRHLPK---QAGILRSGKSCRLRWMNYLRP 65 (325)
Q Consensus 14 lkKG~WT~EEDe~L~~lV~k~G~~nW~~IAk---~lg~~Rt~kQCR~RW~n~L~P 65 (325)
.++++||+|||+.|++.|++||. +|..|+. .+. +|+...+.+||.+..+.
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~-~RT~VdLKdk~r~L~k~ 58 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQK-GRRAVDLAHKYHRLISG 58 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCT-TCCHHHHHHHHHHHHTC
T ss_pred CCCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCcc-CcccchHHHHHHHHHhc
Confidence 47899999999999999999998 9999994 443 79999999999998764
No 62
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.72 E-value=8.3e-09 Score=94.72 Aligned_cols=49 Identities=16% Similarity=0.287 Sum_probs=45.9
Q ss_pred CCCCCChHHHHHHHHHHHhhCCCHHHHHhhCCCCCHHHHHHHHHHHHHH
Q 041991 68 KRGPFAPEEVATIIQLHGLFGNKWAAIASHLPGRTDNDIKNLWNTRLKK 116 (325)
Q Consensus 68 krg~WT~EED~~Ll~l~~~~G~kWs~IA~~LpGRT~nq~KnRW~t~lkk 116 (325)
..++||+||++++++++.+||++|..||+.+++||.+|||++|+..+++
T Consensus 132 ~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKR 180 (235)
T 2iw5_B 132 CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR 180 (235)
T ss_dssp CCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred cCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 3569999999999999999999999999999999999999999987765
No 63
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.69 E-value=9.8e-09 Score=75.93 Aligned_cols=53 Identities=13% Similarity=0.211 Sum_probs=46.6
Q ss_pred ccCCCCcCCCCHHHHHHHHHHHHHhCCCCcccccccccccccchhhhhhhhhhcC
Q 041991 10 DMEKMKRGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWMNYLR 64 (325)
Q Consensus 10 dk~~lkKG~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCR~RW~n~L~ 64 (325)
++.....++||+||++++++++.+||. +|..||+.++ +|+..||+.+|....+
T Consensus 6 ~~~r~~~~~WT~eE~~~F~~~~~~~gk-~w~~Ia~~l~-~rt~~~~v~~Yy~~Kk 58 (61)
T 2eqr_A 6 SGDRQFMNVWTDHEKEIFKDKFIQHPK-NFGLIASYLE-RKSVPDCVLYYYLTKK 58 (61)
T ss_dssp CCCCSCCCSCCHHHHHHHHHHHHHSTT-CHHHHHHHCT-TSCHHHHHHHHHHHTC
T ss_pred ccccccCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcC-CCCHHHHHHHHHHhcC
Confidence 345567799999999999999999996 9999999998 8999999999976544
No 64
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.45 E-value=6.4e-08 Score=74.21 Aligned_cols=52 Identities=13% Similarity=0.227 Sum_probs=45.1
Q ss_pred CCCCcCCCCHHHHHHHHHHHHHhCC---CCcccccccccccccchhhhhhhhhhcCC
Q 041991 12 EKMKRGVWSPEEDAKLIQYIKEHGH---GTWRHLPKQAGILRSGKSCRLRWMNYLRP 65 (325)
Q Consensus 12 ~~lkKG~WT~EEDe~L~~lV~k~G~---~nW~~IAk~lg~~Rt~kQCR~RW~n~L~P 65 (325)
...+.+.||.|||++|.+++.+|+. ..|..||+.+ +|+.++|+.||..++..
T Consensus 4 ~~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l--gRt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 4 GSSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL--GRSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH--TSCHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh--CCCHHHHHHHHHHHHHh
Confidence 4566889999999999999999984 4699999997 49999999999887654
No 65
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.43 E-value=1.8e-07 Score=72.00 Aligned_cols=47 Identities=9% Similarity=0.229 Sum_probs=42.8
Q ss_pred CCCCChHHHHHHHHHHHhhC----CCHHHHHhhCCCCCHHHHHHHHHHHHH
Q 041991 69 RGPFAPEEVATIIQLHGLFG----NKWAAIASHLPGRTDNDIKNLWNTRLK 115 (325)
Q Consensus 69 rg~WT~EED~~Ll~l~~~~G----~kWs~IA~~LpGRT~nq~KnRW~t~lk 115 (325)
...||.+|+++|.+++..|+ .+|..||..+||||..+|+.||..+++
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~ 58 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPR 58 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence 46899999999999999998 469999999999999999999987744
No 66
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=98.43 E-value=1.3e-07 Score=95.19 Aligned_cols=46 Identities=17% Similarity=0.304 Sum_probs=42.6
Q ss_pred CCCChHHHHHHHHHHHhhCCCHHHHHhhCCCCCHHHHHHHHHHHHH
Q 041991 70 GPFAPEEVATIIQLHGLFGNKWAAIASHLPGRTDNDIKNLWNTRLK 115 (325)
Q Consensus 70 g~WT~EED~~Ll~l~~~~G~kWs~IA~~LpGRT~nq~KnRW~t~lk 115 (325)
.+||+||.+++++++.+||.+|..||++++.||..|||++|..+.+
T Consensus 381 ~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~kk 426 (482)
T 2xag_B 381 ARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRR 426 (482)
T ss_dssp SCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 5899999999999999999999999999999999999999975443
No 67
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.40 E-value=8.7e-08 Score=70.75 Aligned_cols=48 Identities=27% Similarity=0.555 Sum_probs=43.0
Q ss_pred cCCCCHHHHHHHHHHHHHh--------CCCCcccccc-cccccccchhhhhhhhhhcC
Q 041991 16 RGVWSPEEDAKLIQYIKEH--------GHGTWRHLPK-QAGILRSGKSCRLRWMNYLR 64 (325)
Q Consensus 16 KG~WT~EEDe~L~~lV~k~--------G~~nW~~IAk-~lg~~Rt~kQCR~RW~n~L~ 64 (325)
|.+||+|||+.|+++|.+| |..-|..+++ .++ +++-.+||+||.++|+
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~-~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLT-QHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSS-SCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCC-CCCHHHHHHHHHHHcc
Confidence 5689999999999999999 5456999999 676 8999999999999885
No 68
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.35 E-value=4.5e-07 Score=66.89 Aligned_cols=47 Identities=21% Similarity=0.356 Sum_probs=42.5
Q ss_pred CCCCChHHHHHHHHHHHhh--------CCC-HHHHHh-hCCCCCHHHHHHHHHHHHH
Q 041991 69 RGPFAPEEVATIIQLHGLF--------GNK-WAAIAS-HLPGRTDNDIKNLWNTRLK 115 (325)
Q Consensus 69 rg~WT~EED~~Ll~l~~~~--------G~k-Ws~IA~-~LpGRT~nq~KnRW~t~lk 115 (325)
|.+||+|||.+|++.+.+| |+. |.+|++ .+|++|-.++++||...|+
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence 5689999999999999999 555 999999 7999999999999987664
No 69
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.23 E-value=5.2e-07 Score=82.88 Aligned_cols=52 Identities=21% Similarity=0.361 Sum_probs=47.1
Q ss_pred cCCCCcCCCCHHHHHHHHHHHHHhCCCCcccccccccccccchhhhhhhhhhcC
Q 041991 11 MEKMKRGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWMNYLR 64 (325)
Q Consensus 11 k~~lkKG~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCR~RW~n~L~ 64 (325)
......++||.||++++++++.+||. +|..||+.++ +|+..||+.+|.+|.+
T Consensus 128 ~~~k~s~~WTeEE~~lFleAl~kYGK-DW~~IAk~Vg-TKT~~QcKnfY~~~kK 179 (235)
T 2iw5_B 128 VIQKCNARWTTEEQLLAVQAIRKYGR-DFQAISDVIG-NKSVVQVKNFFVNYRR 179 (235)
T ss_dssp CCCCCCSSCCHHHHHHHHHHHHHHSS-CHHHHHHHHS-SCCHHHHHHHHHHTTT
T ss_pred CCCccCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 34456789999999999999999997 9999999998 8999999999998875
No 70
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.17 E-value=6.6e-07 Score=68.89 Aligned_cols=49 Identities=24% Similarity=0.437 Sum_probs=43.7
Q ss_pred cCCCCHHHHHHHHHHHHHhCC---CCcccccccccccccchhhhhhhhhhcCC
Q 041991 16 RGVWSPEEDAKLIQYIKEHGH---GTWRHLPKQAGILRSGKSCRLRWMNYLRP 65 (325)
Q Consensus 16 KG~WT~EEDe~L~~lV~k~G~---~nW~~IAk~lg~~Rt~kQCR~RW~n~L~P 65 (325)
...||.+|+++|.+++..|+. ++|..||..+| +|+..+|+.||..+++-
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~-gKT~eE~~~hY~~l~~~ 59 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVG-SRSPEECQRKYMENPRG 59 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTT-TSCHHHHHHHHHHSSSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcC-CCCHHHHHHHHHHHHhc
Confidence 468999999999999999975 47999999998 79999999999987653
No 71
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=98.15 E-value=2.6e-06 Score=67.97 Aligned_cols=45 Identities=13% Similarity=0.273 Sum_probs=43.0
Q ss_pred CCChHHHHHHHHHHHhhCC---CHHHHHhhCCCCCHHHHHHHHHHHHH
Q 041991 71 PFAPEEVATIIQLHGLFGN---KWAAIASHLPGRTDNDIKNLWNTRLK 115 (325)
Q Consensus 71 ~WT~EED~~Ll~l~~~~G~---kWs~IA~~LpGRT~nq~KnRW~t~lk 115 (325)
-||.|||+.||..+++-|. .|+.||+.|.+|+.+||++||+.+++
T Consensus 35 lWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~ 82 (95)
T 1ug2_A 35 LWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQ 82 (95)
T ss_dssp SSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHH
T ss_pred EeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHH
Confidence 6999999999999999996 79999999999999999999999887
No 72
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.13 E-value=5.5e-06 Score=61.55 Aligned_cols=51 Identities=12% Similarity=0.230 Sum_probs=45.9
Q ss_pred CCCCCCCCCChHHHHHHHHHHHhhCCCHHHHHhh-CCCCCHHHHHHHHHHHH
Q 041991 64 RPDIKRGPFAPEEVATIIQLHGLFGNKWAAIASH-LPGRTDNDIKNLWNTRL 114 (325)
Q Consensus 64 ~P~lkrg~WT~EED~~Ll~l~~~~G~kWs~IA~~-LpGRT~nq~KnRW~t~l 114 (325)
.|.++...||+||-++..+.+.+||.+|..|+++ +++||..+|..+|....
T Consensus 4 ~p~~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~wK 55 (63)
T 2yqk_A 4 GSSGIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYYWK 55 (63)
T ss_dssp CCCCCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHHHHH
T ss_pred CCCcCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHhccc
Confidence 4778889999999999999999999999999995 89999999999886433
No 73
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=97.99 E-value=1.9e-05 Score=63.29 Aligned_cols=60 Identities=17% Similarity=0.266 Sum_probs=52.7
Q ss_pred hhhhhhcCCCCCCCCCChHHHHHHHHHHHhhCCCHHHHHhhCC-----CCCHHHHHHHHHHHHHHHHhh
Q 041991 57 LRWMNYLRPDIKRGPFAPEEVATIIQLHGLFGNKWAAIASHLP-----GRTDNDIKNLWNTRLKKHLQS 120 (325)
Q Consensus 57 ~RW~n~L~P~lkrg~WT~EED~~Ll~l~~~~G~kWs~IA~~Lp-----GRT~nq~KnRW~t~lkkkl~~ 120 (325)
+.|..+|.. ..||.||...|++|+++|+-+|..|+..+. +||-.++|.||..+.++.++.
T Consensus 22 eEY~~~L~~----~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~ 86 (93)
T 4iej_A 22 QEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANV 86 (93)
T ss_dssp HHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCC----CCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 456677763 689999999999999999999999999874 699999999999999987765
No 74
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=97.22 E-value=9.3e-07 Score=67.06 Aligned_cols=44 Identities=16% Similarity=0.257 Sum_probs=41.6
Q ss_pred CCChHHHHHHHHHHHhhCC---CHHHHHhhCCCCCHHHHHHHHHHHHH
Q 041991 71 PFAPEEVATIIQLHGLFGN---KWAAIASHLPGRTDNDIKNLWNTRLK 115 (325)
Q Consensus 71 ~WT~EED~~Ll~l~~~~G~---kWs~IA~~LpGRT~nq~KnRW~t~lk 115 (325)
-||.|||+.||..+++-|. .|..||..| +|+++||++||+.+++
T Consensus 16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~ 62 (70)
T 2lr8_A 16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMK 62 (70)
Confidence 6999999999999999997 799999999 9999999999998775
No 75
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=97.94 E-value=2.4e-05 Score=74.70 Aligned_cols=103 Identities=13% Similarity=0.167 Sum_probs=80.9
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCcccccccccccccchhhhh-------hhhh---------h------------------
Q 041991 17 GVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRL-------RWMN---------Y------------------ 62 (325)
Q Consensus 17 G~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCR~-------RW~n---------~------------------ 62 (325)
+.||..+...++.++.+||..+|..||..++ +++...++. ||.. .
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~-~Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~~l 189 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVE-GKTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKKAL 189 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHTTSST-TCCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999999999999999999997 677766642 2200 0
Q ss_pred -------------c---CCCCCCCCCChHHHHHHHHHHHhhCC----CHHHHHh------------hCCCCCHHHHHHHH
Q 041991 63 -------------L---RPDIKRGPFAPEEVATIIQLHGLFGN----KWAAIAS------------HLPGRTDNDIKNLW 110 (325)
Q Consensus 63 -------------L---~P~lkrg~WT~EED~~Ll~l~~~~G~----kWs~IA~------------~LpGRT~nq~KnRW 110 (325)
| .+.-+...||++||..||-++.+||. .|..|.. ++..||+.+|..|.
T Consensus 190 ~~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc 269 (304)
T 1ofc_X 190 DQKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRC 269 (304)
T ss_dssp HHHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHH
T ss_pred HHHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHH
Confidence 0 02234568999999999999999995 4999962 45779999999999
Q ss_pred HHHHHHHHhh
Q 041991 111 NTRLKKHLQS 120 (325)
Q Consensus 111 ~t~lkkkl~~ 120 (325)
+++++-..+.
T Consensus 270 ~tLi~~iekE 279 (304)
T 1ofc_X 270 NTLITLIERE 279 (304)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999754443
No 76
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=97.86 E-value=2.7e-06 Score=65.44 Aligned_cols=43 Identities=19% Similarity=0.380 Sum_probs=38.5
Q ss_pred CCCCChHHHHHHHHHHHhhCC----CHHHHHhhCCCCCHHHHHHHHH
Q 041991 69 RGPFAPEEVATIIQLHGLFGN----KWAAIASHLPGRTDNDIKNLWN 111 (325)
Q Consensus 69 rg~WT~EED~~Ll~l~~~~G~----kWs~IA~~LpGRT~nq~KnRW~ 111 (325)
.++||.+|+++|.+++.+|+. +|.+||..+||||..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 458999999999999999984 7999999999999999999874
No 77
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.59 E-value=9.5e-05 Score=59.12 Aligned_cols=46 Identities=15% Similarity=0.085 Sum_probs=42.1
Q ss_pred CCCCChHHHHHHHHHHHhhCCCHHHHHhhCCCCCHHHHHHHHHHHH
Q 041991 69 RGPFAPEEVATIIQLHGLFGNKWAAIASHLPGRTDNDIKNLWNTRL 114 (325)
Q Consensus 69 rg~WT~EED~~Ll~l~~~~G~kWs~IA~~LpGRT~nq~KnRW~t~l 114 (325)
...||+||.++..+.+.+||.+|..|+..||+||..+|-.+|....
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~~K 88 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLTK 88 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhccc
Confidence 4689999999999999999999999999999999999999886443
No 78
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.57 E-value=0.00015 Score=54.97 Aligned_cols=44 Identities=14% Similarity=0.246 Sum_probs=40.9
Q ss_pred CCCCChHHHHHHHHHHHhhCCCHHHHHh-hCCCCCHHHHHHHHHH
Q 041991 69 RGPFAPEEVATIIQLHGLFGNKWAAIAS-HLPGRTDNDIKNLWNT 112 (325)
Q Consensus 69 rg~WT~EED~~Ll~l~~~~G~kWs~IA~-~LpGRT~nq~KnRW~t 112 (325)
...||+||-++..+.+.+||.+|..|++ .||+||..+|..+|..
T Consensus 8 ~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~ 52 (70)
T 2crg_A 8 MEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYM 52 (70)
T ss_dssp SCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHHh
Confidence 4689999999999999999999999999 5899999999999873
No 79
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=97.55 E-value=2.2e-05 Score=60.37 Aligned_cols=45 Identities=9% Similarity=0.222 Sum_probs=38.9
Q ss_pred CcCCCCHHHHHHHHHHHHHhCCC---Ccccccccccccccchhhhhhhh
Q 041991 15 KRGVWSPEEDAKLIQYIKEHGHG---TWRHLPKQAGILRSGKSCRLRWM 60 (325)
Q Consensus 15 kKG~WT~EEDe~L~~lV~k~G~~---nW~~IAk~lg~~Rt~kQCR~RW~ 60 (325)
....||.||+++|.+++..|..+ .|..||..+| +|+..+|+.+|.
T Consensus 19 ss~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~Vp-GKT~eEVk~hY~ 66 (74)
T 4eef_G 19 SGRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVK-GRTPEEVKKHYE 66 (74)
T ss_dssp ---CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSC-SSCHHHHHGGGC
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcC-CCCHHHHHHHHH
Confidence 45689999999999999999764 7999999998 799999999984
No 80
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.44 E-value=9.6e-05 Score=54.79 Aligned_cols=51 Identities=8% Similarity=0.148 Sum_probs=44.5
Q ss_pred cCCCCcCCCCHHHHHHHHHHHHHhCCCCcccccc-cccccccchhhhhhhhhhc
Q 041991 11 MEKMKRGVWSPEEDAKLIQYIKEHGHGTWRHLPK-QAGILRSGKSCRLRWMNYL 63 (325)
Q Consensus 11 k~~lkKG~WT~EEDe~L~~lV~k~G~~nW~~IAk-~lg~~Rt~kQCR~RW~n~L 63 (325)
.+.++..+||+||-++..+.+.+||. +|..|++ .++ +|+..+|..-|...-
T Consensus 4 ~p~~~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~-~Kt~~~~v~fYY~wK 55 (63)
T 2yqk_A 4 GSSGIEKCWTEDEVKRFVKGLRQYGK-NFFRIRKELLP-NKETGELITFYYYWK 55 (63)
T ss_dssp CCCCCCCSCCHHHHHHHHHHHHHTCS-CHHHHHHHSCT-TSCHHHHHHHHHHHH
T ss_pred CCCcCCCCcCHHHHHHHHHHHHHhCc-cHHHHHHHHcC-CCcHHHHHHHHhccc
Confidence 46778899999999999999999998 9999998 477 899999988775543
No 81
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=97.34 E-value=0.00011 Score=74.08 Aligned_cols=50 Identities=22% Similarity=0.383 Sum_probs=44.9
Q ss_pred CCCcCCCCHHHHHHHHHHHHHhCCCCcccccccccccccchhhhhhhhhhcC
Q 041991 13 KMKRGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWMNYLR 64 (325)
Q Consensus 13 ~lkKG~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCR~RW~n~L~ 64 (325)
.....+||.||.+++++++.+||. +|..|++.++ +|+..|||..|.+|-+
T Consensus 377 ~~~~~~WT~eE~~~f~~al~~yGk-dw~~IA~~Vg-TKT~~Qvk~fy~~~kk 426 (482)
T 2xag_B 377 QKCNARWTTEEQLLAVQAIRKYGR-DFQAISDVIG-NKSVVQVKNFFVNYRR 426 (482)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHTT-CHHHHHHHHS-SCCHHHHHHHHHHTTT
T ss_pred cccCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 345689999999999999999997 9999999998 8999999999987643
No 82
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=97.05 E-value=0.00031 Score=56.33 Aligned_cols=51 Identities=12% Similarity=0.217 Sum_probs=44.1
Q ss_pred CCCcCCCCHHHHHHHHHHHHHhCCCCccccccccc----ccccchhhhhhhhhhcC
Q 041991 13 KMKRGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAG----ILRSGKSCRLRWMNYLR 64 (325)
Q Consensus 13 ~lkKG~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg----~~Rt~kQCR~RW~n~L~ 64 (325)
.++..+||.||++.|++++++|+. .|..|+..+. .+|+.-+.+.||....+
T Consensus 27 ~L~~~~WTkEETd~Lf~L~~~fdl-RW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~ 81 (93)
T 3hm5_A 27 YLHDDAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHICA 81 (93)
T ss_dssp HTCBTTBCHHHHHHHHHHHHHTTT-CHHHHHHHSCTTTSCCCCHHHHHHHHHHHHH
T ss_pred HcCCCCCCHHHHHHHHHHHHHhCC-CeeeehhhhccCCCCCCCHHHHHHHHHHHHH
Confidence 355699999999999999999998 9999999983 26999999999977543
No 83
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=97.04 E-value=0.00057 Score=53.01 Aligned_cols=50 Identities=18% Similarity=0.401 Sum_probs=41.4
Q ss_pred CCCCChHHHHHHHHHHHhhC----------CCHHHHHhhCC----CCCHHHHHHHHHHHHHHHH
Q 041991 69 RGPFAPEEVATIIQLHGLFG----------NKWAAIASHLP----GRTDNDIKNLWNTRLKKHL 118 (325)
Q Consensus 69 rg~WT~EED~~Ll~l~~~~G----------~kWs~IA~~Lp----GRT~nq~KnRW~t~lkkkl 118 (325)
...||.+|-..||+++.+.. ..|..||..|. .||+.||+++|.++.+...
T Consensus 4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Yk 67 (86)
T 2ebi_A 4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEFK 67 (86)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 46899999999999997632 14999999873 6999999999998887643
No 84
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=96.89 E-value=0.00017 Score=56.02 Aligned_cols=51 Identities=24% Similarity=0.562 Sum_probs=41.3
Q ss_pred CCcCCCCHHHHHHHHHHHHHhCC---------CCcccccccc---cccccchhhhhhhhhhcC
Q 041991 14 MKRGVWSPEEDAKLIQYIKEHGH---------GTWRHLPKQA---GILRSGKSCRLRWMNYLR 64 (325)
Q Consensus 14 lkKG~WT~EEDe~L~~lV~k~G~---------~nW~~IAk~l---g~~Rt~kQCR~RW~n~L~ 64 (325)
.+...||.+|-..|++++..+.. .-|..|+..| |..|++.||+.+|.|..+
T Consensus 2 kR~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k 64 (86)
T 2ebi_A 2 KRAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLK 64 (86)
T ss_dssp CCSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 35689999999999999976421 1599999875 356999999999998753
No 85
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=96.78 E-value=0.0036 Score=55.49 Aligned_cols=45 Identities=16% Similarity=0.310 Sum_probs=36.3
Q ss_pred CCChHHHHHHHHHHHhhC-CCHHHHHhh--C----------CC--CCHHHHHHHHHHHHH
Q 041991 71 PFAPEEVATIIQLHGLFG-NKWAAIASH--L----------PG--RTDNDIKNLWNTRLK 115 (325)
Q Consensus 71 ~WT~EED~~Ll~l~~~~G-~kWs~IA~~--L----------pG--RT~nq~KnRW~t~lk 115 (325)
.||.+||..||..+.+|| ++|..|..- | .. ++..++..|-..+|+
T Consensus 136 ~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D~~l~~~~k~~~~~~~k~p~a~~L~rR~~~Ll~ 195 (211)
T 4b4c_A 136 DWGKEDDSNLLIGIYEYGYGSWEMIKMDPDLSLTHKILPDDPDKKPQAKQLQTRADYLIK 195 (211)
T ss_dssp CCCHHHHHHHHHHHHHHCTTCHHHHHHCSSSSCTTTSSCSSTTSSCCHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCcCcHHHHHhChhcCccccccccccccCCChHHHHHHHHHHHH
Confidence 699999999999999999 889999652 1 12 456679999887776
No 86
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=96.74 E-value=0.0053 Score=60.08 Aligned_cols=105 Identities=17% Similarity=0.236 Sum_probs=79.0
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCcccccccccccccchhhhhhhhhh----------------------------------
Q 041991 17 GVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWMNY---------------------------------- 62 (325)
Q Consensus 17 G~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCR~RW~n~---------------------------------- 62 (325)
+.||.-+=..++.++.+||..+-..|+..++.+.+...++. |.+.
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~-Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~~~~ 202 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRA-YAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQQEA 202 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHH-HHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHH-HHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56999999999999999999889999998853455555541 1111
Q ss_pred --------------cC----CC-CCCCCCChHHHHHHHHHHHhhCC----CHHHHHhh------------CCCCCHHHHH
Q 041991 63 --------------LR----PD-IKRGPFAPEEVATIIQLHGLFGN----KWAAIASH------------LPGRTDNDIK 107 (325)
Q Consensus 63 --------------L~----P~-lkrg~WT~EED~~Ll~l~~~~G~----kWs~IA~~------------LpGRT~nq~K 107 (325)
|. +. -+...||++||..||-++.+||- .|..|-.. +..||+.+|.
T Consensus 203 L~~Ki~~y~~P~~~L~i~y~~~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~ 282 (374)
T 2y9y_A 203 LRRKLSEYKNPFFDLKLKHPPSSNNKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELA 282 (374)
T ss_dssp HHHHHTTCSSHHHHCCCSSCCCCSSCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHH
T ss_pred HHHHHHHccCCHHHceeccCCCCCCCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHH
Confidence 00 11 13558999999999999999994 59999443 4679999999
Q ss_pred HHHHHHHHHHHhhcc
Q 041991 108 NLWNTRLKKHLQSMN 122 (325)
Q Consensus 108 nRW~t~lkkkl~~~~ 122 (325)
.|.+++++-..+...
T Consensus 283 rRc~tLi~~IeKE~~ 297 (374)
T 2y9y_A 283 RRGNTLLQCLEKEFN 297 (374)
T ss_dssp HHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999986655533
No 87
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=96.71 E-value=0.00092 Score=50.54 Aligned_cols=47 Identities=13% Similarity=0.159 Sum_probs=40.9
Q ss_pred CcCCCCHHHHHHHHHHHHHhCCCCcccccc-cccccccchhhhhhhhhhc
Q 041991 15 KRGVWSPEEDAKLIQYIKEHGHGTWRHLPK-QAGILRSGKSCRLRWMNYL 63 (325)
Q Consensus 15 kKG~WT~EEDe~L~~lV~k~G~~nW~~IAk-~lg~~Rt~kQCR~RW~n~L 63 (325)
....||+||-+++.+.+.+||. +|..|++ .++ +|+..+|..-|...-
T Consensus 7 ~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~-~Kt~~~~v~fYY~wK 54 (70)
T 2crg_A 7 GMEEWSASEACLFEEALEKYGK-DFNDIRQDFLP-WKSLTSIIEYYYMWK 54 (70)
T ss_dssp SSCCCCHHHHHHHHHHHHHTCS-CHHHHHHTTCS-SSCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCc-cHHHHHHHHcC-CCCHHHHHHHHHhhc
Confidence 4568999999999999999998 9999999 477 899999988776443
No 88
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=96.66 E-value=0.00064 Score=54.29 Aligned_cols=46 Identities=20% Similarity=0.416 Sum_probs=41.1
Q ss_pred CCCCHHHHHHHHHHHHHhCC--CCcccccccccccccchhhhhhhhhhc
Q 041991 17 GVWSPEEDAKLIQYIKEHGH--GTWRHLPKQAGILRSGKSCRLRWMNYL 63 (325)
Q Consensus 17 G~WT~EEDe~L~~lV~k~G~--~nW~~IAk~lg~~Rt~kQCR~RW~n~L 63 (325)
--||.|||..|+...++.|. ..|..|++.++ +|++.|+.+||+.++
T Consensus 34 vlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~-Nks~nqV~~RFq~Lm 81 (95)
T 1ug2_A 34 VLWTREADRVILTMCQEQGAQPHTFSVISQQLG-NKTPVEVSHRFRELM 81 (95)
T ss_dssp SSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHS-SCCHHHHHHHHHHHH
T ss_pred EEeccccCHHHHHHHHhcCCChhHHHHHHHHHc-cCCHHHHHHHHHHHH
Confidence 46999999999999999976 37999999998 899999999997754
No 89
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=96.65 E-value=0.001 Score=53.02 Aligned_cols=45 Identities=13% Similarity=0.273 Sum_probs=40.3
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCcccccccccccccchhhhhhhhhh
Q 041991 16 RGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWMNY 62 (325)
Q Consensus 16 KG~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCR~RW~n~ 62 (325)
...||+||.+++.+.+..||. +|..|++.++ +|+..+|...|...
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK-~F~~Ia~~l~-~Kt~~~cV~~YY~~ 87 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPK-NFGLIASFLE-RKTVAECVLYYYLT 87 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTT-CHHHHHHTCT-TCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCC-CHHHHHHHcC-CCCHHHHHHHHhcc
Confidence 368999999999999999997 9999999998 89999999877543
No 90
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=95.15 E-value=0.00086 Score=50.86 Aligned_cols=46 Identities=13% Similarity=0.313 Sum_probs=40.9
Q ss_pred CCCCHHHHHHHHHHHHHhCC--CCcccccccccccccchhhhhhhhhhcC
Q 041991 17 GVWSPEEDAKLIQYIKEHGH--GTWRHLPKQAGILRSGKSCRLRWMNYLR 64 (325)
Q Consensus 17 G~WT~EEDe~L~~lV~k~G~--~nW~~IAk~lg~~Rt~kQCR~RW~n~L~ 64 (325)
-.||.|||..|+..+++.|. .-|..||+.+ +|++.|+..||+..++
T Consensus 15 vlWTReeDR~IL~~cq~~G~s~~tfa~iA~~L--nks~~QV~~RF~~Lm~ 62 (70)
T 2lr8_A 15 ILWTRNDDRVILLECQKRGPSSKTFAYLAAKL--DKNPNQVSERFQQLMK 62 (70)
Confidence 47999999999999999987 3699999888 5999999999988764
No 91
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=94.55 E-value=0.12 Score=38.62 Aligned_cols=48 Identities=10% Similarity=0.008 Sum_probs=40.9
Q ss_pred CCCCCChHHHHHHHHHHHhhCCC---HHHHHhhC--CCCCHHHHHHHHHHHHH
Q 041991 68 KRGPFAPEEVATIIQLHGLFGNK---WAAIASHL--PGRTDNDIKNLWNTRLK 115 (325)
Q Consensus 68 krg~WT~EED~~Ll~l~~~~G~k---Ws~IA~~L--pGRT~nq~KnRW~t~lk 115 (325)
.+-.||+|..+..++++.++|.. +..|-+.| +|.|..+|+.|.+.+..
T Consensus 6 ~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~ 58 (64)
T 1irz_A 6 PRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRV 58 (64)
T ss_dssp SSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHH
Confidence 45689999999999999999955 88998886 78999999998876543
No 92
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=93.26 E-value=0.054 Score=43.27 Aligned_cols=49 Identities=12% Similarity=0.245 Sum_probs=41.0
Q ss_pred CCcCCCCHHHHHHHHHHHHHhCCCCccccccccc----ccccchhhhhhhhhhc
Q 041991 14 MKRGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAG----ILRSGKSCRLRWMNYL 63 (325)
Q Consensus 14 lkKG~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg----~~Rt~kQCR~RW~n~L 63 (325)
++...||.||.+.|++++++|.- .|..|+.... ..|+--+.++||....
T Consensus 28 L~~~~WT~eETd~LfdLc~~fdl-Rw~vI~DRy~~~~~~~RtvEdLK~RYY~V~ 80 (93)
T 4iej_A 28 LHDDAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHIC 80 (93)
T ss_dssp TCBTTBCHHHHHHHHHHHHHTTT-CHHHHHHHCCTTTSCCCCHHHHHHHHHHHH
T ss_pred hCCCCCCHHHHHHHHHHHHHcCC-CeEEEeeccccCCCCCCCHHHHHHHHHHHH
Confidence 55678999999999999999997 9999988764 2588888888887653
No 93
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=92.81 E-value=0.16 Score=44.67 Aligned_cols=50 Identities=22% Similarity=0.318 Sum_probs=42.3
Q ss_pred CCCCCChHHHHHHHHHHHhhC---CCHHHHHhh--CCCCCHHHHHHHHHHHHHHH
Q 041991 68 KRGPFAPEEVATIIQLHGLFG---NKWAAIASH--LPGRTDNDIKNLWNTRLKKH 117 (325)
Q Consensus 68 krg~WT~EED~~Ll~l~~~~G---~kWs~IA~~--LpGRT~nq~KnRW~t~lkkk 117 (325)
....||+.|-..|+..+.+|| .+|..|+.. |.++|..+|+.++..++..-
T Consensus 6 ~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~c 60 (211)
T 4b4c_A 6 NIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNGC 60 (211)
T ss_dssp --CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHHH
Confidence 456899999999999999999 579999865 78999999999887766543
No 94
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=92.59 E-value=0.19 Score=47.92 Aligned_cols=47 Identities=13% Similarity=0.246 Sum_probs=41.6
Q ss_pred CCCCChHHHHHHHHHHHhhCC-CHHHHHhhCCCCCHHHHHHHHHHHHH
Q 041991 69 RGPFAPEEVATIIQLHGLFGN-KWAAIASHLPGRTDNDIKNLWNTRLK 115 (325)
Q Consensus 69 rg~WT~EED~~Ll~l~~~~G~-kWs~IA~~LpGRT~nq~KnRW~t~lk 115 (325)
.+.||..+...++.++.+||. .|..||..++|+|..+|+.+......
T Consensus 110 F~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~ 157 (304)
T 1ofc_X 110 FTAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWE 157 (304)
T ss_dssp CTTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHH
T ss_pred hcccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 457999999999999999995 69999999999999999887765554
No 95
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=89.98 E-value=0.22 Score=46.69 Aligned_cols=29 Identities=31% Similarity=0.680 Sum_probs=26.4
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCccccccc
Q 041991 17 GVWSPEEDAKLIQYIKEHGHGTWRHLPKQ 45 (325)
Q Consensus 17 G~WT~EEDe~L~~lV~k~G~~nW~~IAk~ 45 (325)
..|+.+||..|+..|.+||.|+|..|-.-
T Consensus 169 c~W~~~dD~~LLvGIykyGyG~We~Ir~D 197 (270)
T 2xb0_X 169 SNWTKEEDEKLLIGVFKYGYGSWTQIRDD 197 (270)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHHHC
T ss_pred CCcChHHHHHHHHHHHHHcCCcHHHHhcC
Confidence 46999999999999999999999999753
No 96
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=89.31 E-value=0.32 Score=36.22 Aligned_cols=50 Identities=12% Similarity=0.233 Sum_probs=37.7
Q ss_pred CCCCcCCCCHHHHHHHHHHHHHhCCCC---cccccccccc-cccchhhhhhhhhh
Q 041991 12 EKMKRGVWSPEEDAKLIQYIKEHGHGT---WRHLPKQAGI-LRSGKSCRLRWMNY 62 (325)
Q Consensus 12 ~~lkKG~WT~EEDe~L~~lV~k~G~~n---W~~IAk~lg~-~Rt~kQCR~RW~n~ 62 (325)
.+..+-.||+|..++++++|++.|. . +..|.+.|+. +.+..++..+.+.|
T Consensus 3 ~~k~r~~WT~elH~~Fv~Av~~LG~-~~AtPk~Il~~M~v~gLT~~~VkSHLQKY 56 (64)
T 1irz_A 3 QKKPRVLWTHELHNKFLAAVDHLGV-ERAVPKKILDLMNVDKLTRENVASHLQKF 56 (64)
T ss_dssp CCCSSCSSCHHHHHHHHHHHHHHCT-TTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhCC-CCCCcHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 4556789999999999999999994 4 4566666553 46777887766655
No 97
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=81.98 E-value=3 Score=38.95 Aligned_cols=47 Identities=15% Similarity=0.266 Sum_probs=41.4
Q ss_pred CCCCChHHHHHHHHHHHhhC---CCHHHHHhh--CCCCCHHHHHHHHHHHHH
Q 041991 69 RGPFAPEEVATIIQLHGLFG---NKWAAIASH--LPGRTDNDIKNLWNTRLK 115 (325)
Q Consensus 69 rg~WT~EED~~Ll~l~~~~G---~kWs~IA~~--LpGRT~nq~KnRW~t~lk 115 (325)
+++||+.|-..|++.+.+|| .+|..|+.. |+.++...|+.-++.++.
T Consensus 3 ~~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~L~~ks~~~i~~~~~~li~ 54 (270)
T 2xb0_X 3 LGSIGESEVRALYKAILKFGNLKEILDELIADGTLPVKSFEKYGETYDEMME 54 (270)
T ss_dssp TCCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTSSCCCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCCHHHHHHHHHHHHH
Confidence 57899999999999999999 589999765 789999999998886664
No 98
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=71.95 E-value=6.6 Score=27.29 Aligned_cols=42 Identities=17% Similarity=0.147 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHhhCCCHHHHHhhCCCCCHHHHHHHHHHHHHHH
Q 041991 75 EEVATIIQLHGLFGNKWAAIASHLPGRTDNDIKNLWNTRLKKH 117 (325)
Q Consensus 75 EED~~Ll~l~~~~G~kWs~IA~~LpGRT~nq~KnRW~t~lkkk 117 (325)
+.+..++.++...|-.+.+||..+ |-+...|+++.+..+++-
T Consensus 18 ~~~r~il~l~~~~g~s~~eIA~~l-gis~~tv~~~~~ra~~~l 59 (70)
T 2o8x_A 18 TDQREALLLTQLLGLSYADAAAVC-GCPVGTIRSRVARARDAL 59 (70)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 455666667777899999999999 889999999877666543
No 99
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=68.90 E-value=10 Score=28.39 Aligned_cols=41 Identities=24% Similarity=0.253 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHhhCCCHHHHHhhCCCCCHHHHHHHHHHHHHH
Q 041991 75 EEVATIIQLHGLFGNKWAAIASHLPGRTDNDIKNLWNTRLKK 116 (325)
Q Consensus 75 EED~~Ll~l~~~~G~kWs~IA~~LpGRT~nq~KnRW~t~lkk 116 (325)
+.++.++.++...|-.-..||..| |-+...|+.+....+++
T Consensus 40 ~~~r~vl~l~~~~g~s~~eIA~~l-gis~~tV~~~l~ra~~~ 80 (92)
T 3hug_A 40 AEHRAVIQRSYYRGWSTAQIATDL-GIAEGTVKSRLHYAVRA 80 (92)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 456667777777888999999999 99999999988765544
No 100
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=68.61 E-value=8.5 Score=27.57 Aligned_cols=42 Identities=19% Similarity=0.279 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHh----hCCCHHHHHhhCCCCCHHHHHHHHHHHHHHH
Q 041991 75 EEVATIIQLHGL----FGNKWAAIASHLPGRTDNDIKNLWNTRLKKH 117 (325)
Q Consensus 75 EED~~Ll~l~~~----~G~kWs~IA~~LpGRT~nq~KnRW~t~lkkk 117 (325)
+.+..++.++.. .|-.|.+||..+ |-+...|+++....+++-
T Consensus 13 ~~er~il~l~~~l~~~~~~s~~eIA~~l-~is~~tV~~~~~ra~~kL 58 (73)
T 1ku3_A 13 EREAMVLKMRKGLIDGREHTLEEVGAYF-GVTRERIRQIENKALRKL 58 (73)
T ss_dssp HHHHHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 344555555554 577899999999 999999999877666543
No 101
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=66.03 E-value=8.4 Score=27.18 Aligned_cols=42 Identities=12% Similarity=0.164 Sum_probs=31.4
Q ss_pred HHHHHHHHHHH----hhCCCHHHHHhhCCCCCHHHHHHHHHHHHHHH
Q 041991 75 EEVATIIQLHG----LFGNKWAAIASHLPGRTDNDIKNLWNTRLKKH 117 (325)
Q Consensus 75 EED~~Ll~l~~----~~G~kWs~IA~~LpGRT~nq~KnRW~t~lkkk 117 (325)
+.+..++.++. ..|-.+.+||..+ |-+...|+++....+++-
T Consensus 8 ~~er~il~l~~~l~~~~g~s~~eIA~~l-gis~~tV~~~~~ra~~kL 53 (68)
T 2p7v_B 8 AREAKVLRMRFGIDMNTDYTLEEVGKQF-DVTRERIRQIEAKALRKL 53 (68)
T ss_dssp HHHHHHHHHHTTTTSSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHccCCCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 34455555554 3478899999999 999999999887766643
No 102
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=61.08 E-value=38 Score=27.48 Aligned_cols=79 Identities=13% Similarity=0.067 Sum_probs=48.6
Q ss_pred CcCCCCHHHHHHHHHHHHHhCCCCcccccccccccccchhhhhhhhhhc------CCCCC----CCCCChHHHHHHHHHH
Q 041991 15 KRGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWMNYL------RPDIK----RGPFAPEEVATIIQLH 84 (325)
Q Consensus 15 kKG~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCR~RW~n~L------~P~lk----rg~WT~EED~~Ll~l~ 84 (325)
+..+.|.++-..++.++. .|. +...||+.+++ +... -.||.+.. .+... ....+.++.+.|++++
T Consensus 22 ~~~~~s~e~r~~ii~l~~-~G~-s~~~IA~~lgi--s~~T-V~rwl~r~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~ 96 (159)
T 2k27_A 22 NGRPLPEVVRQRIVDLAH-QGV-RPCDISRQLRV--SHGC-VSKILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYK 96 (159)
T ss_dssp SSCSSCHHHHHHHHHHHH-HTC-CHHHHHHHHTC--CSHH-HHHHHCCSSTTSCCCCCCCCCCCCCCCCTTHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHH-cCC-CHHHHHHHHCc--CHHH-HHHHHHHHHhcCCccCCCCCCCCCCCCCHHHHHHHHHHH
Confidence 345789998888888884 564 77899998874 3333 33454432 22211 2357888888888888
Q ss_pred HhhC-CCHHHHHhhC
Q 041991 85 GLFG-NKWAAIASHL 98 (325)
Q Consensus 85 ~~~G-~kWs~IA~~L 98 (325)
.+.. -.-.+|+..|
T Consensus 97 ~~~~~~s~~~i~~~l 111 (159)
T 2k27_A 97 RQNPTMFAWEIRDRL 111 (159)
T ss_dssp HHCSSSCHHHHHHHH
T ss_pred HHCccchHHHHHHHH
Confidence 6643 2234555544
No 103
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=57.76 E-value=58 Score=25.93 Aligned_cols=79 Identities=11% Similarity=0.092 Sum_probs=48.6
Q ss_pred CcCCCCHHHHHHHHHHHHHhCCCCcccccccccccccchhhhhhhhhh------cCCCCC----CCCCChHHHHHHHHHH
Q 041991 15 KRGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWMNY------LRPDIK----RGPFAPEEVATIIQLH 84 (325)
Q Consensus 15 kKG~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCR~RW~n~------L~P~lk----rg~WT~EED~~Ll~l~ 84 (325)
...+.|.++-..++.++. .|. ....||+.+++ +... -.||.+. +.+... ....+.++.+.|++++
T Consensus 29 ~~~~~s~e~r~~iv~~~~-~G~-s~~~iA~~lgi--s~~T-V~rw~~~~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~ 103 (149)
T 1k78_A 29 NGRPLPDVVRQRIVELAH-QGV-RPCDISRQLRV--SHGC-VSKILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYK 103 (149)
T ss_dssp TTSCCCHHHHHHHHHHHH-TTC-CHHHHHHHHTC--CHHH-HHHHHHHHHHHSCCCCCCCCCCCCSSSCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHH-cCC-CHHHHHHHHCc--CHHH-HHHHHHHHHHcCCCCccCCCCCCCCCCCHHHHHHHHHHH
Confidence 345789999888888884 564 77899998874 3333 3344332 223222 2347888888888888
Q ss_pred HhhC-CCHHHHHhhC
Q 041991 85 GLFG-NKWAAIASHL 98 (325)
Q Consensus 85 ~~~G-~kWs~IA~~L 98 (325)
.+.. -.-..|+..|
T Consensus 104 ~~~~~~s~~~i~~~l 118 (149)
T 1k78_A 104 RQNPTMFAWEIRDRL 118 (149)
T ss_dssp HHCTTCCHHHHHHHH
T ss_pred HhCcchhHHHHHHHH
Confidence 7643 2234555544
No 104
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=56.77 E-value=41 Score=27.43 Aligned_cols=79 Identities=22% Similarity=0.345 Sum_probs=50.5
Q ss_pred CCCCcCCCCHHHH--HHHHHHHHHhCCCCcccccccccccccchhhhhhhhhhcCCCCCCCCCChHHHHHHHHHHHhhC-
Q 041991 12 EKMKRGVWSPEED--AKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWMNYLRPDIKRGPFAPEEVATIIQLHGLFG- 88 (325)
Q Consensus 12 ~~lkKG~WT~EED--e~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCR~RW~n~L~P~lkrg~WT~EED~~Ll~l~~~~G- 88 (325)
.+.-+.+|.+.+. +.|.+++++.|. ....++..-+ |.-. =-.|..++.++|
T Consensus 3 ~~~~~~r~~~~~~Fl~~L~~F~~~rGt-pl~~~P~i~g--k~lD-----------------------L~~Ly~~V~~~GG 56 (121)
T 2rq5_A 3 LGSLGRRWGPNVQRLACIKKHLRSQGI-TMDELPLIGG--CELD-----------------------LACFFRLINEMGG 56 (121)
T ss_dssp CCCCSSCCCHHHHHHHHHHHHHHHTTC-CCSSCCEETT--EECC-----------------------HHHHHHHHHHTTS
T ss_pred HHHhhHhcCCcHHHHHHHHHHHHHcCC-CCCCCCcCCC--Eecc-----------------------HHHHHHHHHHcCc
Confidence 3455678988775 557777788887 5555664322 2221 124667777777
Q ss_pred -------CCHHHHHhhC--CCC---CHHHHHHHHHHHHHH
Q 041991 89 -------NKWAAIASHL--PGR---TDNDIKNLWNTRLKK 116 (325)
Q Consensus 89 -------~kWs~IA~~L--pGR---T~nq~KnRW~t~lkk 116 (325)
+.|..||..| |.- ....+|++|..+|-.
T Consensus 57 ~~~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~ 96 (121)
T 2rq5_A 57 MQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLS 96 (121)
T ss_dssp HHHHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHH
T ss_pred HHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHH
Confidence 4699999998 322 245788888776653
No 105
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=53.23 E-value=29 Score=24.58 Aligned_cols=41 Identities=15% Similarity=0.137 Sum_probs=30.7
Q ss_pred ChHHHHHHHHHHHhhCCCHHHHHhhCCCCCHHHHHHHHHHHHHH
Q 041991 73 APEEVATIIQLHGLFGNKWAAIASHLPGRTDNDIKNLWNTRLKK 116 (325)
Q Consensus 73 T~EED~~Ll~l~~~~G~kWs~IA~~LpGRT~nq~KnRW~t~lkk 116 (325)
|+.| ..++.++ ..|-.-.+||..| |-+...|+.+....+++
T Consensus 18 ~~~e-~~vl~l~-~~g~s~~eIA~~l-~is~~tV~~~~~r~~~k 58 (79)
T 1x3u_A 18 SERE-RQVLSAV-VAGLPNKSIAYDL-DISPRTVEVHRANVMAK 58 (79)
T ss_dssp CHHH-HHHHHHH-TTTCCHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred CHHH-HHHHHHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 4444 4455555 6788899999999 88999999887766654
No 106
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=51.16 E-value=26 Score=34.18 Aligned_cols=46 Identities=22% Similarity=0.320 Sum_probs=38.8
Q ss_pred CCCCChHHHHHHHHHHHhhCCC-HHHHHhhCC-CCCHHHHHHHHHHHH
Q 041991 69 RGPFAPEEVATIIQLHGLFGNK-WAAIASHLP-GRTDNDIKNLWNTRL 114 (325)
Q Consensus 69 rg~WT~EED~~Ll~l~~~~G~k-Ws~IA~~Lp-GRT~nq~KnRW~t~l 114 (325)
.+.||.-|=..++.+..+||.. -..||..|. |+|..+|+.+.....
T Consensus 123 F~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~~vFw 170 (374)
T 2y9y_A 123 FTNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAKAFW 170 (374)
T ss_dssp CCCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHHHHHH
T ss_pred hcccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHHHHHH
Confidence 4579999999999999999955 999999997 999999996655433
No 107
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=51.13 E-value=5 Score=32.41 Aligned_cols=39 Identities=15% Similarity=0.293 Sum_probs=31.0
Q ss_pred HHHHHHHHhCC-------CCcccccccccccccchhhhhhhhhhcCC
Q 041991 26 KLIQYIKEHGH-------GTWRHLPKQAGILRSGKSCRLRWMNYLRP 65 (325)
Q Consensus 26 ~L~~lV~k~G~-------~nW~~IAk~lg~~Rt~kQCR~RW~n~L~P 65 (325)
+|..+|.+.|. ..|..|+..+++.. +...+..|.+||.|
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~-~~~Lr~~Y~k~L~~ 98 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISD-YQQLESIYFRILLP 98 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCC-TTHHHHHHHHHHSH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCCCh-HHHHHHHHHHHHHH
Confidence 47777777764 37999999998655 78889999999876
No 108
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=50.71 E-value=33 Score=25.99 Aligned_cols=46 Identities=17% Similarity=0.224 Sum_probs=34.9
Q ss_pred CCCCCChHHHHHHHHHHHhhCCCHHHHHhhCCCCCHHHHHHHHHHHHHH
Q 041991 68 KRGPFAPEEVATIIQLHGLFGNKWAAIASHLPGRTDNDIKNLWNTRLKK 116 (325)
Q Consensus 68 krg~WT~EED~~Ll~l~~~~G~kWs~IA~~LpGRT~nq~KnRW~t~lkk 116 (325)
.....|+.|-+.|.-++ .|..-.+||..| |-+...|+++...+++|
T Consensus 26 ~~~~Lt~rE~~Vl~l~~--~G~s~~eIA~~L-~iS~~TV~~~~~~i~~K 71 (90)
T 3ulq_B 26 EQDVLTPRECLILQEVE--KGFTNQEIADAL-HLSKRSIEYSLTSIFNK 71 (90)
T ss_dssp ---CCCHHHHHHHHHHH--TTCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred cccCCCHHHHHHHHHHH--cCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 34467877776665444 788999999999 89999999988877664
No 109
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=50.30 E-value=6.4 Score=32.38 Aligned_cols=56 Identities=20% Similarity=0.311 Sum_probs=41.9
Q ss_pred HHHHHHHHhCC-------CCcccccccccccccc----hhhhhhhhhhcCCCCCCCCCChHHHHHHHHHH
Q 041991 26 KLIQYIKEHGH-------GTWRHLPKQAGILRSG----KSCRLRWMNYLRPDIKRGPFAPEEVATIIQLH 84 (325)
Q Consensus 26 ~L~~lV~k~G~-------~nW~~IAk~lg~~Rt~----kQCR~RW~n~L~P~lkrg~WT~EED~~Ll~l~ 84 (325)
+|..+|.+.|. ..|..|+..+++..+. ...|..|.+||.|-- .++++|-..|.+-+
T Consensus 46 ~Ly~~V~~~GG~~~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~YE---~~~~~e~~~l~~~v 112 (121)
T 2rq5_A 46 CFFRLINEMGGMQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSYD---SLSPEEHRRLEKEV 112 (121)
T ss_dssp HHHHHHHHTTSHHHHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHHH---HCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCcHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHHH---CcCHHHHhhHHHHH
Confidence 57888888874 3799999999875533 467889999998732 37778888877655
No 110
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=47.96 E-value=38 Score=27.68 Aligned_cols=36 Identities=17% Similarity=0.131 Sum_probs=27.4
Q ss_pred HHHHHhhCCCHHHHHhhCCCCCHHHHHHHHHHHHHHH
Q 041991 81 IQLHGLFGNKWAAIASHLPGRTDNDIKNLWNTRLKKH 117 (325)
Q Consensus 81 l~l~~~~G~kWs~IA~~LpGRT~nq~KnRW~t~lkkk 117 (325)
+.++...|-...+||..| |-+...|+++....+++-
T Consensus 149 l~l~~~~g~s~~EIA~~l-gis~~tV~~~l~ra~~~L 184 (194)
T 1or7_A 149 ITLRELDGLSYEEIAAIM-DCPVGTVRSRIFRAREAI 184 (194)
T ss_dssp HHHHHTTCCCHHHHHHHT-TSCHHHHHHHHHHHHHHH
T ss_pred hHHHHHcCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 333344577899999999 899999999887666543
No 111
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=46.32 E-value=19 Score=28.83 Aligned_cols=38 Identities=18% Similarity=0.353 Sum_probs=28.5
Q ss_pred HHHHHHHhhC--------CCHHHHHhhCCCCCHHHHHHHHHHHHHH
Q 041991 79 TIIQLHGLFG--------NKWAAIASHLPGRTDNDIKNLWNTRLKK 116 (325)
Q Consensus 79 ~Ll~l~~~~G--------~kWs~IA~~LpGRT~nq~KnRW~t~lkk 116 (325)
.|..+|...| +.|..||..|.--....++.+|..+|-.
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~Lr~~Y~k~L~~ 98 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLP 98 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCCTTHHHHHHHHHHSH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence 4666677777 4699999998433478999999887753
No 112
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=45.65 E-value=35 Score=25.04 Aligned_cols=43 Identities=28% Similarity=0.246 Sum_probs=32.6
Q ss_pred CCChHHHHHHHHHHHhhCCCHHHHHhhCCCCCHHHHHHHHHHHHHH
Q 041991 71 PFAPEEVATIIQLHGLFGNKWAAIASHLPGRTDNDIKNLWNTRLKK 116 (325)
Q Consensus 71 ~WT~EED~~Ll~l~~~~G~kWs~IA~~LpGRT~nq~KnRW~t~lkk 116 (325)
.+|+.|-+.|. ++ ..|..-.+||+.| |-+...|+++....+++
T Consensus 21 ~Lt~~e~~vl~-l~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~k 63 (82)
T 1je8_A 21 QLTPRERDILK-LI-AQGLPNKMIARRL-DITESTVKVHVKHMLKK 63 (82)
T ss_dssp GSCHHHHHHHH-HH-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHH-HH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 45666655544 44 6788899999999 89999999987766654
No 113
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=45.42 E-value=34 Score=25.28 Aligned_cols=40 Identities=13% Similarity=0.135 Sum_probs=30.1
Q ss_pred HHHHHHHHHHh----hCCCHHHHHhhCCCCCHHHHHHHHHHHHHH
Q 041991 76 EVATIIQLHGL----FGNKWAAIASHLPGRTDNDIKNLWNTRLKK 116 (325)
Q Consensus 76 ED~~Ll~l~~~----~G~kWs~IA~~LpGRT~nq~KnRW~t~lkk 116 (325)
.+..++.+..- .|-.+..||..| |-+...|+++-...+++
T Consensus 22 ~er~vl~l~~~l~~~~~~s~~EIA~~l-gis~~tV~~~~~ra~~k 65 (87)
T 1tty_A 22 REAMVLRMRYGLLDGKPKTLEEVGQYF-NVTRERIRQIEVKALRK 65 (87)
T ss_dssp HHHHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 45555555554 567899999999 99999999977666554
No 114
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=45.06 E-value=34 Score=25.82 Aligned_cols=43 Identities=21% Similarity=0.131 Sum_probs=32.8
Q ss_pred CCChHHHHHHHHHHHhhCCCHHHHHhhCCCCCHHHHHHHHHHHHHH
Q 041991 71 PFAPEEVATIIQLHGLFGNKWAAIASHLPGRTDNDIKNLWNTRLKK 116 (325)
Q Consensus 71 ~WT~EED~~Ll~l~~~~G~kWs~IA~~LpGRT~nq~KnRW~t~lkk 116 (325)
..|+.|-+.|. ++ ..|-.-.+||..| |-+...|+++....+++
T Consensus 27 ~Lt~~e~~vl~-l~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~k 69 (95)
T 3c57_A 27 GLTDQERTLLG-LL-SEGLTNKQIADRM-FLAEKTVKNYVSRLLAK 69 (95)
T ss_dssp CCCHHHHHHHH-HH-HTTCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHH-HH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 46666655554 45 7788899999999 88999999987766654
No 115
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=44.80 E-value=36 Score=23.58 Aligned_cols=44 Identities=16% Similarity=0.122 Sum_probs=33.2
Q ss_pred CCCChHHHHHHHHHHHhhCCCHHHHHhhCCCCCHHHHHHHHHHHHHH
Q 041991 70 GPFAPEEVATIIQLHGLFGNKWAAIASHLPGRTDNDIKNLWNTRLKK 116 (325)
Q Consensus 70 g~WT~EED~~Ll~l~~~~G~kWs~IA~~LpGRT~nq~KnRW~t~lkk 116 (325)
..+|+.|-+.|.. + ..|..-.+||..+ |-+...|+.+...++++
T Consensus 10 ~~L~~~e~~il~~-~-~~g~s~~eIA~~l-~is~~tV~~~~~~~~~k 53 (74)
T 1fse_A 10 PLLTKREREVFEL-L-VQDKTTKEIASEL-FISEKTVRNHISNAMQK 53 (74)
T ss_dssp CCCCHHHHHHHHH-H-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHH-H-HcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 3567766665554 4 6678899999999 88999999887766554
No 116
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=43.66 E-value=8.2 Score=30.53 Aligned_cols=40 Identities=18% Similarity=0.374 Sum_probs=30.0
Q ss_pred HHHHHHHHhCC-------CCccccccccccccc----chhhhhhhhhhcCC
Q 041991 26 KLIQYIKEHGH-------GTWRHLPKQAGILRS----GKSCRLRWMNYLRP 65 (325)
Q Consensus 26 ~L~~lV~k~G~-------~nW~~IAk~lg~~Rt----~kQCR~RW~n~L~P 65 (325)
+|..+|.+.|. ..|..|+..+++..+ ..+.+..|.+||.|
T Consensus 37 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~ 87 (107)
T 1ig6_A 37 TMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILP 87 (107)
T ss_dssp HHHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTT
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 46677777753 379999999986542 35778899999886
No 117
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=42.42 E-value=45 Score=22.35 Aligned_cols=38 Identities=13% Similarity=0.082 Sum_probs=29.5
Q ss_pred HHHHHHHHHhhCCCHHHHHhhCCCCCHHHHHHHHHHHHHH
Q 041991 77 VATIIQLHGLFGNKWAAIASHLPGRTDNDIKNLWNTRLKK 116 (325)
Q Consensus 77 D~~Ll~l~~~~G~kWs~IA~~LpGRT~nq~KnRW~t~lkk 116 (325)
+..++.+ -..|-.-.+||..| |-+...|+++...++++
T Consensus 3 e~~vl~l-~~~g~s~~eIA~~l-~is~~tV~~~~~~~~~k 40 (61)
T 2jpc_A 3 ERQVLKL-IDEGYTNHGISEKL-HISIKTVETHRMNMMRK 40 (61)
T ss_dssp HHHHHHH-HHTSCCSHHHHHHT-CSCHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHcCCCHHHHHHHh-CCCHHHHHHHHHHHHHH
Confidence 4455566 35688889999999 89999999988776654
No 118
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=42.19 E-value=7.8 Score=31.33 Aligned_cols=40 Identities=18% Similarity=0.360 Sum_probs=29.8
Q ss_pred HHHHHHHHhCC-------CCccccccccccccc---chhhhhhhhhhcCC
Q 041991 26 KLIQYIKEHGH-------GTWRHLPKQAGILRS---GKSCRLRWMNYLRP 65 (325)
Q Consensus 26 ~L~~lV~k~G~-------~nW~~IAk~lg~~Rt---~kQCR~RW~n~L~P 65 (325)
+|..+|.+.|. ..|..|+..+++..+ +.+.|..|.++|.|
T Consensus 44 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~ 93 (117)
T 2jrz_A 44 SLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYP 93 (117)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 57778887764 379999999986543 45678888888865
No 119
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=41.68 E-value=8 Score=31.65 Aligned_cols=40 Identities=25% Similarity=0.475 Sum_probs=29.9
Q ss_pred HHHHHHHHhCC-------CCccccccccccccc----chhhhhhhhhhcCC
Q 041991 26 KLIQYIKEHGH-------GTWRHLPKQAGILRS----GKSCRLRWMNYLRP 65 (325)
Q Consensus 26 ~L~~lV~k~G~-------~nW~~IAk~lg~~Rt----~kQCR~RW~n~L~P 65 (325)
+|..+|.++|. ..|..|+..+++..+ ....|..|.+||.|
T Consensus 56 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~ 106 (128)
T 1c20_A 56 ELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYP 106 (128)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 46677777764 379999999986543 45678888888876
No 120
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=41.68 E-value=1.2e+02 Score=23.35 Aligned_cols=86 Identities=13% Similarity=0.077 Sum_probs=51.9
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCcccccccccccccchhhhhhhhhhcCC------CCCCCCCChHHHHHHHHHHHhhCCC
Q 041991 17 GVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWMNYLRP------DIKRGPFAPEEVATIIQLHGLFGNK 90 (325)
Q Consensus 17 G~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCR~RW~n~L~P------~lkrg~WT~EED~~Ll~l~~~~G~k 90 (325)
...|.++-..++.++ +.|. +-..||+.++. +...+ .||.+.... .......+.+++..|+++...-+-.
T Consensus 5 ~~~s~~~r~~i~~~~-~~G~-s~~~ia~~lgi--s~~Tv-~r~~~~~~~~g~~~~~gr~~~l~~~~~~~i~~~~~~~~~s 79 (141)
T 1u78_A 5 SALSDTERAQLDVMK-LLNV-SLHEMSRKISR--SRHCI-RVYLKDPVSYGTSKRAPRRKALSVRDERNVIRAASNSCKT 79 (141)
T ss_dssp CCCCHHHHHHHHHHH-HTTC-CHHHHHHHHTC--CHHHH-HHHHHSGGGTTCCCCCCCCCSSCHHHHHHHHHHHHHCCCC
T ss_pred ccCCHHHHHHHHHHH-HcCC-CHHHHHHHHCc--CHHHH-HHHHHcccccCCcCCCCCCCcCCHHHHHHHHHHHhCCCCC
Confidence 467888888887777 4464 67899998874 33333 334333221 1122357888888888773322234
Q ss_pred HHHHHhhCCC--CCHHHHHH
Q 041991 91 WAAIASHLPG--RTDNDIKN 108 (325)
Q Consensus 91 Ws~IA~~LpG--RT~nq~Kn 108 (325)
-.+|+..| | -+...|.+
T Consensus 80 ~~~i~~~l-g~~~s~~tV~r 98 (141)
T 1u78_A 80 ARDIRNEL-QLSASKRTILN 98 (141)
T ss_dssp HHHHHHHT-TCCSCHHHHHH
T ss_pred HHHHHHHH-CCCccHHHHHH
Confidence 57888888 4 45555554
No 121
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=41.56 E-value=8 Score=31.58 Aligned_cols=40 Identities=28% Similarity=0.499 Sum_probs=28.0
Q ss_pred HHHHHHHHhCC-------CCccccccccccccc---chhhhhhhhhhcCC
Q 041991 26 KLIQYIKEHGH-------GTWRHLPKQAGILRS---GKSCRLRWMNYLRP 65 (325)
Q Consensus 26 ~L~~lV~k~G~-------~nW~~IAk~lg~~Rt---~kQCR~RW~n~L~P 65 (325)
+|..+|.++|. ..|..|+..+++..+ ..+.|..|.+||.|
T Consensus 55 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~ 104 (125)
T 2cxy_A 55 RLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLFA 104 (125)
T ss_dssp HHHHHHHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 46667776653 379999999886543 35667788887765
No 122
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=41.09 E-value=44 Score=26.05 Aligned_cols=38 Identities=21% Similarity=0.354 Sum_probs=26.5
Q ss_pred HHHHHHHhhC--------CCHHHHHhhCCCCC----HHHHHHHHHHHHHH
Q 041991 79 TIIQLHGLFG--------NKWAAIASHLPGRT----DNDIKNLWNTRLKK 116 (325)
Q Consensus 79 ~Ll~l~~~~G--------~kWs~IA~~LpGRT----~nq~KnRW~t~lkk 116 (325)
.|...+.+.| +.|..|+..|.--. ...+|.+|..+|-.
T Consensus 48 ~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~ 97 (107)
T 2lm1_A 48 TLHRIVQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERILHP 97 (107)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHH
Confidence 4556666666 47999999983322 46788888877754
No 123
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=39.83 E-value=56 Score=25.67 Aligned_cols=41 Identities=10% Similarity=0.038 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHhhCCCHHHHHhhCCCCCHHHHHHHHHHHHHH
Q 041991 75 EEVATIIQLHGLFGNKWAAIASHLPGRTDNDIKNLWNTRLKK 116 (325)
Q Consensus 75 EED~~Ll~l~~~~G~kWs~IA~~LpGRT~nq~KnRW~t~lkk 116 (325)
+.+..++.++...|-....||..+ |-+...|+.+....+++
T Consensus 28 ~~~r~vl~l~~~~g~s~~EIA~~l-giS~~tV~~~l~ra~~k 68 (113)
T 1xsv_A 28 NKQRNYLELFYLEDYSLSEIADTF-NVSRQAVYDNIRRTGDL 68 (113)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHT-TCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 345666777777889999999999 89999999887765543
No 124
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=39.35 E-value=8.4 Score=30.34 Aligned_cols=40 Identities=20% Similarity=0.448 Sum_probs=28.8
Q ss_pred HHHHHHHHhCC-------CCccccccccccccc---chhhhhhhhhhcCC
Q 041991 26 KLIQYIKEHGH-------GTWRHLPKQAGILRS---GKSCRLRWMNYLRP 65 (325)
Q Consensus 26 ~L~~lV~k~G~-------~nW~~IAk~lg~~Rt---~kQCR~RW~n~L~P 65 (325)
+|..+|.+.|. ..|..|+..+++..+ +.+.+..|.++|.|
T Consensus 48 ~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~ 97 (107)
T 2lm1_A 48 TLHRIVQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERILHP 97 (107)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHH
Confidence 56777777764 379999999986543 45677788887754
No 125
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=38.96 E-value=21 Score=29.87 Aligned_cols=40 Identities=30% Similarity=0.547 Sum_probs=29.5
Q ss_pred HHHHHHHHhCC-------CCccccccccccccc----chhhhhhhhhhcCC
Q 041991 26 KLIQYIKEHGH-------GTWRHLPKQAGILRS----GKSCRLRWMNYLRP 65 (325)
Q Consensus 26 ~L~~lV~k~G~-------~nW~~IAk~lg~~Rt----~kQCR~RW~n~L~P 65 (325)
+|..+|.+.|. ..|..|+..+++..+ ..+.+..|.+||.|
T Consensus 68 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~ 118 (145)
T 2kk0_A 68 MLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYP 118 (145)
T ss_dssp HHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSH
T ss_pred HHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHH
Confidence 45666666653 379999999986442 45678899999987
No 126
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=38.33 E-value=43 Score=26.21 Aligned_cols=31 Identities=26% Similarity=0.239 Sum_probs=24.9
Q ss_pred HhhCCCHHHHHhhCCCCCHHHHHHHHHHHHHH
Q 041991 85 GLFGNKWAAIASHLPGRTDNDIKNLWNTRLKK 116 (325)
Q Consensus 85 ~~~G~kWs~IA~~LpGRT~nq~KnRW~t~lkk 116 (325)
...|-....||..| |-+...|+++....+++
T Consensus 121 ~~~g~s~~EIA~~l-gis~~tV~~~~~ra~~~ 151 (164)
T 3mzy_A 121 LIRGYSYREIATIL-SKNLKSIDNTIQRIRKK 151 (164)
T ss_dssp HTTTCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 34577899999999 89999999988765543
No 127
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=38.21 E-value=41 Score=26.97 Aligned_cols=38 Identities=13% Similarity=0.247 Sum_probs=27.1
Q ss_pred HHHHHHHhhC--------CCHHHHHhhCCCCC----HHHHHHHHHHHHHH
Q 041991 79 TIIQLHGLFG--------NKWAAIASHLPGRT----DNDIKNLWNTRLKK 116 (325)
Q Consensus 79 ~Ll~l~~~~G--------~kWs~IA~~LpGRT----~nq~KnRW~t~lkk 116 (325)
.|...+.+.| +.|..|+..|.--. ...+|.+|..+|-.
T Consensus 44 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~ 93 (117)
T 2jrz_A 44 SLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYP 93 (117)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 4666677777 46999999983221 56789988887754
No 128
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=38.14 E-value=52 Score=27.58 Aligned_cols=41 Identities=20% Similarity=0.097 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHhhCCCHHHHHhhCCCCCHHHHHHHHHHHHHH
Q 041991 75 EEVATIIQLHGLFGNKWAAIASHLPGRTDNDIKNLWNTRLKK 116 (325)
Q Consensus 75 EED~~Ll~l~~~~G~kWs~IA~~LpGRT~nq~KnRW~t~lkk 116 (325)
+.+..++.++...|-...+||..| |-+...|+++....+++
T Consensus 190 ~~~r~vl~l~~~~g~s~~EIA~~l-gis~~~V~~~~~ra~~~ 230 (239)
T 1rp3_A 190 EREKLVIQLIFYEELPAKEVAKIL-ETSVSRVSQLKAKALER 230 (239)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHh-CCCHHHHHHHHHHHHHH
Confidence 344455555555688899999999 99999999887765554
No 129
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=36.97 E-value=22 Score=29.01 Aligned_cols=34 Identities=15% Similarity=-0.012 Sum_probs=26.3
Q ss_pred HHHhhCCCHHHHHhhCCCCCHHHHHHHHHHHHHHH
Q 041991 83 LHGLFGNKWAAIASHLPGRTDNDIKNLWNTRLKKH 117 (325)
Q Consensus 83 l~~~~G~kWs~IA~~LpGRT~nq~KnRW~t~lkkk 117 (325)
++...|-...+||..| |-+...|+++....+++-
T Consensus 146 l~~~~g~s~~eIA~~l-gis~~tV~~~l~ra~~~L 179 (184)
T 2q1z_A 146 RAFFGDLTHRELAAET-GLPLGTIKSRIRLALDRL 179 (184)
T ss_dssp HHHHSCCSSCCSTTTC-CCCCHHHHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 3334577789999999 889999999888766653
No 130
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=36.43 E-value=29 Score=26.23 Aligned_cols=67 Identities=15% Similarity=0.123 Sum_probs=40.8
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCcccccccccccccchhhhhhhhhh------cCCCC----CCCCCChHHHHHHHHHHH
Q 041991 16 RGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWMNY------LRPDI----KRGPFAPEEVATIIQLHG 85 (325)
Q Consensus 16 KG~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCR~RW~n~------L~P~l----krg~WT~EED~~Ll~l~~ 85 (325)
..+.+.++-..++.++. .|. +...||+.++.. ...+ .||... +.+.. .....++++.+.|++++.
T Consensus 15 ~~~~s~~~r~~i~~~~~-~g~-s~~~ia~~lgis--~~Tv-~~w~~~~~~~g~~~~~~~~g~~~~~l~~~~~~~i~~~~~ 89 (128)
T 1pdn_C 15 GRPLPNNIRLKIVEMAA-DGI-RPCVISRQLRVS--HGCV-SKILNRYQETGSIRPGVIGGSKPRIATPEIENRIEEYKR 89 (128)
T ss_dssp TSCCCHHHHHHHHHHHH-TTC-CHHHHHHHHTCC--HHHH-HHHHHHHHHHCCSSCCCCSCCCCCSSCSTHHHHHHHTTT
T ss_pred CCcCCHHHHHHHHHHHH-cCC-CHHHHHHHHCcC--HHHH-HHHHHHHHhhCCcccccCCCCCCCcCCHHHHHHHHHHHH
Confidence 34789999888888874 564 778999988743 3222 333332 22221 123467777777777665
Q ss_pred hh
Q 041991 86 LF 87 (325)
Q Consensus 86 ~~ 87 (325)
+.
T Consensus 90 ~~ 91 (128)
T 1pdn_C 90 SS 91 (128)
T ss_dssp TC
T ss_pred hC
Confidence 43
No 131
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=36.21 E-value=49 Score=26.74 Aligned_cols=38 Identities=21% Similarity=0.295 Sum_probs=27.3
Q ss_pred HHHHHHHhhC--------CCHHHHHhhCCCCC----HHHHHHHHHHHHHH
Q 041991 79 TIIQLHGLFG--------NKWAAIASHLPGRT----DNDIKNLWNTRLKK 116 (325)
Q Consensus 79 ~Ll~l~~~~G--------~kWs~IA~~LpGRT----~nq~KnRW~t~lkk 116 (325)
.|..+|.++| +.|.+|+..|.--+ ...+|++|..+|-.
T Consensus 55 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~ 104 (125)
T 2cxy_A 55 RLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLFA 104 (125)
T ss_dssp HHHHHHHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 4556666776 47999999983322 46889988888865
No 132
>2yqf_A Ankyrin-1; death domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yvi_A
Probab=35.84 E-value=54 Score=25.77 Aligned_cols=35 Identities=20% Similarity=0.346 Sum_probs=28.3
Q ss_pred ChHHHHHHHHHHHhhCCCHHHHHhhCCCCCHHHHHH
Q 041991 73 APEEVATIIQLHGLFGNKWAAIASHLPGRTDNDIKN 108 (325)
Q Consensus 73 T~EED~~Ll~l~~~~G~kWs~IA~~LpGRT~nq~Kn 108 (325)
++.-+..|..+....|..|..+|..| |=+..+|.+
T Consensus 14 ~~~~~~~~~~ia~~lg~~Wk~LAr~L-g~s~~~I~~ 48 (111)
T 2yqf_A 14 TEQAEMKMAVISEHLGLSWAELAREL-QFSVEDINR 48 (111)
T ss_dssp SHHHHHHHHHHHHHHTTTHHHHHHHT-TCCHHHHHH
T ss_pred HhHHHHHHHHHHHHHhhhHHHHHHHc-CCCHHHHHH
Confidence 56667788888899999999999999 777766544
No 133
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=35.73 E-value=11 Score=30.74 Aligned_cols=40 Identities=23% Similarity=0.498 Sum_probs=28.2
Q ss_pred HHHHHHHHhCC-------CCccccccccccccc---chhhhhhhhhhcCC
Q 041991 26 KLIQYIKEHGH-------GTWRHLPKQAGILRS---GKSCRLRWMNYLRP 65 (325)
Q Consensus 26 ~L~~lV~k~G~-------~nW~~IAk~lg~~Rt---~kQCR~RW~n~L~P 65 (325)
+|..+|.+.|. ..|..|+..+++..+ +...|..|.++|.|
T Consensus 46 ~Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~ 95 (122)
T 2eqy_A 46 QLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILNP 95 (122)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHH
Confidence 46777777764 379999999986543 24667778777764
No 134
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=34.64 E-value=54 Score=26.50 Aligned_cols=38 Identities=21% Similarity=0.343 Sum_probs=26.7
Q ss_pred HHHHHHHhhC--------CCHHHHHhhCCCC--C--HHHHHHHHHHHHHH
Q 041991 79 TIIQLHGLFG--------NKWAAIASHLPGR--T--DNDIKNLWNTRLKK 116 (325)
Q Consensus 79 ~Ll~l~~~~G--------~kWs~IA~~LpGR--T--~nq~KnRW~t~lkk 116 (325)
+|...+.+.| +.|..|+..|.-- + ...+|++|..+|-.
T Consensus 46 ~Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~ 95 (122)
T 2eqy_A 46 QLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILNP 95 (122)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHH
Confidence 4556666776 4699999998322 1 36888888887764
No 135
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=34.39 E-value=25 Score=28.75 Aligned_cols=38 Identities=18% Similarity=0.350 Sum_probs=28.0
Q ss_pred HHHHHHhhC--------CCHHHHHhhCCCCCHHHHHHHHHHHHHHH
Q 041991 80 IIQLHGLFG--------NKWAAIASHLPGRTDNDIKNLWNTRLKKH 117 (325)
Q Consensus 80 Ll~l~~~~G--------~kWs~IA~~LpGRT~nq~KnRW~t~lkkk 117 (325)
|..+|.+.| +.|..|+..|.--....+|+.|..+|-.-
T Consensus 53 Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~Lr~~Y~k~L~~y 98 (123)
T 1kkx_A 53 LYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLPY 98 (123)
T ss_dssp HHHHHTTTSCHHHHTTSHHHHHHHHHHTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHhccccccHHHHHHHHCCChHHHHHHHHHHHHHHH
Confidence 555566666 25999999973333899999999888753
No 136
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=33.92 E-value=1.4e+02 Score=22.97 Aligned_cols=45 Identities=20% Similarity=0.195 Sum_probs=34.9
Q ss_pred CCCCChHHHHHHHHHHHhhCCCHHHHHhhCCCCCHHHHHHHHHHHHHH
Q 041991 69 RGPFAPEEVATIIQLHGLFGNKWAAIASHLPGRTDNDIKNLWNTRLKK 116 (325)
Q Consensus 69 rg~WT~EED~~Ll~l~~~~G~kWs~IA~~LpGRT~nq~KnRW~t~lkk 116 (325)
....|+.|-+.|.- + ..|-.-.+||..| |-+...|+.+...+++|
T Consensus 32 ~~~Lt~re~~Vl~l-~-~~G~s~~EIA~~L-~iS~~TV~~~l~ri~~K 76 (99)
T 1p4w_A 32 DKRLSPKESEVLRL-F-AEGFLVTEIAKKL-NRSIKTISSQKKSAMMK 76 (99)
T ss_dssp SSSCCHHHHHHHHH-H-HHTCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHH-H-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 45678877776644 4 3688899999999 88999999987766654
No 137
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=33.63 E-value=40 Score=24.97 Aligned_cols=43 Identities=23% Similarity=0.116 Sum_probs=31.9
Q ss_pred CCChHHHHHHHHHHHhhCCCHHHHHhhCCCCCHHHHHHHHHHHHHH
Q 041991 71 PFAPEEVATIIQLHGLFGNKWAAIASHLPGRTDNDIKNLWNTRLKK 116 (325)
Q Consensus 71 ~WT~EED~~Ll~l~~~~G~kWs~IA~~LpGRT~nq~KnRW~t~lkk 116 (325)
..|+.|-+.| .++ ..|-.-.+||..| |-+...|+++....+++
T Consensus 29 ~Lt~~e~~vl-~l~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~k 71 (91)
T 2rnj_A 29 MLTEREMEIL-LLI-AKGYSNQEIASAS-HITIKTVKTHVSNILSK 71 (91)
T ss_dssp GCCSHHHHHH-HHH-HTTCCTTHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHH-HHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 3555555554 444 5788899999999 89999999987766654
No 138
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=33.30 E-value=33 Score=29.92 Aligned_cols=25 Identities=28% Similarity=0.691 Sum_probs=19.6
Q ss_pred CCCCcCCCCHHHHHHHH--------HHHHHhCC
Q 041991 12 EKMKRGVWSPEEDAKLI--------QYIKEHGH 36 (325)
Q Consensus 12 ~~lkKG~WT~EEDe~L~--------~lV~k~G~ 36 (325)
|.-..|-||+|+|+.|. ++++|||.
T Consensus 110 P~N~pGIWT~eDDe~L~s~d~~dikrL~kKHG~ 142 (168)
T 3cz6_A 110 PPNVPGIWTHDDDESLKSNDQEQIRKLVKKHGT 142 (168)
T ss_dssp CTTCTTCCCHHHHHHHHSCCHHHHHHHHHHHCH
T ss_pred CCCCCCCCChhhHHHHHcCCHHHHHHHHHHhCH
Confidence 45678999999999884 57777764
No 139
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=33.18 E-value=59 Score=26.26 Aligned_cols=43 Identities=12% Similarity=0.034 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHhhCCCHHHHHhhCCCCCHHHHHHHHHHHHHHHH
Q 041991 75 EEVATIIQLHGLFGNKWAAIASHLPGRTDNDIKNLWNTRLKKHL 118 (325)
Q Consensus 75 EED~~Ll~l~~~~G~kWs~IA~~LpGRT~nq~KnRW~t~lkkkl 118 (325)
+++..++.++...|-.-.+||..| |-+...|+++....+++-.
T Consensus 96 ~~~r~vl~L~~~~g~s~~EIA~~l-gis~~tV~~~l~rar~~Lr 138 (157)
T 2lfw_A 96 PLSRQALLLTAMEGFSPEDAAYLI-EVDTSEVETLVTEALAEIE 138 (157)
T ss_dssp TTHHHHHTTTSSSCCCHHHHHHTT-TSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHHH
Confidence 445556666666688899999999 9999999998876655433
No 140
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=32.06 E-value=43 Score=27.62 Aligned_cols=45 Identities=9% Similarity=-0.023 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHhhCC-CHHHHHhhCCCCCHHHHHHHHHHHHHHHHhh
Q 041991 75 EEVATIIQLHGLFGN-KWAAIASHLPGRTDNDIKNLWNTRLKKHLQS 120 (325)
Q Consensus 75 EED~~Ll~l~~~~G~-kWs~IA~~LpGRT~nq~KnRW~t~lkkkl~~ 120 (325)
+-|..|+++.++-|. .|..||+.+ |-+...|+.|++.+....+.+
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~l-g~s~~tv~~rl~~L~~~g~i~ 48 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKV-GLSTTPCWRRIQKMEEDGVIR 48 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHH-TCCHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCee
Confidence 457788888877664 599999999 999999999998777766533
No 141
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=28.73 E-value=18 Score=29.94 Aligned_cols=44 Identities=20% Similarity=0.293 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHhCCCCcccccccccccccchhhhhhhhhhcCCCC
Q 041991 22 EEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWMNYLRPDI 67 (325)
Q Consensus 22 EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCR~RW~n~L~P~l 67 (325)
+-|.+|+.++++.+.-.|..||+.++ -+...|+.|+.....-++
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~lg--~s~~tv~~rl~~L~~~g~ 46 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKVG--LSTTPCWRRIQKMEEDGV 46 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHHT--CCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHC--cCHHHHHHHHHHHHHCCC
Confidence 45889999999999889999999998 677788888777655443
No 142
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=28.70 E-value=47 Score=25.99 Aligned_cols=38 Identities=16% Similarity=0.267 Sum_probs=27.0
Q ss_pred HHHHHHHhhC--------CCHHHHHhhCC--CC---CHHHHHHHHHHHHHH
Q 041991 79 TIIQLHGLFG--------NKWAAIASHLP--GR---TDNDIKNLWNTRLKK 116 (325)
Q Consensus 79 ~Ll~l~~~~G--------~kWs~IA~~Lp--GR---T~nq~KnRW~t~lkk 116 (325)
.|..++.+.| +.|.+|+..|. .. ....+|++|..+|-.
T Consensus 37 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~ 87 (107)
T 1ig6_A 37 TMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILP 87 (107)
T ss_dssp HHHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTT
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 4556666676 47999999973 21 246899999888754
No 143
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=28.63 E-value=91 Score=24.53 Aligned_cols=40 Identities=18% Similarity=0.123 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHhhCCCHHHHHhhCCCCCHHHHHHHHHHHHH
Q 041991 75 EEVATIIQLHGLFGNKWAAIASHLPGRTDNDIKNLWNTRLK 115 (325)
Q Consensus 75 EED~~Ll~l~~~~G~kWs~IA~~LpGRT~nq~KnRW~t~lk 115 (325)
+.+..++.++...|-.-..||..+ |-+...|+.+....++
T Consensus 25 ~~~r~vl~l~y~~g~s~~EIA~~l-giS~~tV~~~l~ra~~ 64 (113)
T 1s7o_A 25 DKQMNYIELYYADDYSLAEIADEF-GVSRQAVYDNIKRTEK 64 (113)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHH-TCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 345566667777899999999999 9999999998876554
No 144
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=28.26 E-value=84 Score=21.85 Aligned_cols=42 Identities=17% Similarity=0.142 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHhhCCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHhhcccCc
Q 041991 75 EEVATIIQLHGLFGNKWAAIASHLPGRTDNDIKNLWNTRLKKHLQSMNHNL 125 (325)
Q Consensus 75 EED~~Ll~l~~~~G~kWs~IA~~LpGRT~nq~KnRW~t~lkkkl~~~~~~~ 125 (325)
-|.+.|.++...+|+++++.|+.| |=+.. .|.+++++.++.+
T Consensus 19 ~E~~~i~~aL~~~~gn~~~aA~~L-Gisr~--------tL~rklkk~gi~~ 60 (63)
T 3e7l_A 19 FEKIFIEEKLREYDYDLKRTAEEI-GIDLS--------NLYRKIKSLNIRV 60 (63)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHH-TCCHH--------HHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHH-CcCHH--------HHHHHHHHhCCCC
Confidence 467788899999999999999998 54443 3444556666543
No 145
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=27.87 E-value=83 Score=25.43 Aligned_cols=39 Identities=18% Similarity=0.256 Sum_probs=28.3
Q ss_pred HHHHHHHHhhC--------CCHHHHHhhC--CCC---CHHHHHHHHHHHHHH
Q 041991 78 ATIIQLHGLFG--------NKWAAIASHL--PGR---TDNDIKNLWNTRLKK 116 (325)
Q Consensus 78 ~~Ll~l~~~~G--------~kWs~IA~~L--pGR---T~nq~KnRW~t~lkk 116 (325)
-.|..+|..+| +.|..|+..| +.. ....+|.+|..+|-.
T Consensus 55 ~~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~ 106 (128)
T 1c20_A 55 YELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYP 106 (128)
T ss_dssp HHHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 34666777777 4799999998 222 257889999888865
No 146
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=27.77 E-value=77 Score=26.34 Aligned_cols=38 Identities=18% Similarity=0.268 Sum_probs=27.3
Q ss_pred HHHHHHHhhC--------CCHHHHHhhC--CCC---CHHHHHHHHHHHHHH
Q 041991 79 TIIQLHGLFG--------NKWAAIASHL--PGR---TDNDIKNLWNTRLKK 116 (325)
Q Consensus 79 ~Ll~l~~~~G--------~kWs~IA~~L--pGR---T~nq~KnRW~t~lkk 116 (325)
.|..+|.+.| +.|..|+..| +.. ....+|+.|..+|-.
T Consensus 68 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~ 118 (145)
T 2kk0_A 68 MLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYP 118 (145)
T ss_dssp HHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSH
T ss_pred HHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHH
Confidence 4566677777 4699999998 222 256889988887754
No 147
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=27.31 E-value=1.1e+02 Score=24.51 Aligned_cols=45 Identities=11% Similarity=0.056 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHhhC-CCHHHHHhhCCCCCHHHHHHHHHHHHHHHHhh
Q 041991 75 EEVATIIQLHGLFG-NKWAAIASHLPGRTDNDIKNLWNTRLKKHLQS 120 (325)
Q Consensus 75 EED~~Ll~l~~~~G-~kWs~IA~~LpGRT~nq~KnRW~t~lkkkl~~ 120 (325)
+-|..|+.+..+.| -.+..||+.+ |-+...|..+++.+.++.+-+
T Consensus 9 ~~d~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G~i~ 54 (151)
T 2dbb_A 9 RVDMQLVKILSENSRLTYRELADIL-NTTRQRIARRIDKLKKLGIIR 54 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHT-TSCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCEE
Confidence 44667777777766 4699999999 889999999998888776543
No 148
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=26.46 E-value=34 Score=26.21 Aligned_cols=37 Identities=22% Similarity=0.337 Sum_probs=23.8
Q ss_pred HHHHHHHhhC--------CCHHHHHhhCCC-C---CHHHHHHHHHHHHH
Q 041991 79 TIIQLHGLFG--------NKWAAIASHLPG-R---TDNDIKNLWNTRLK 115 (325)
Q Consensus 79 ~Ll~l~~~~G--------~kWs~IA~~LpG-R---T~nq~KnRW~t~lk 115 (325)
.|..++.+.| +.|.+|+..|.- . ....+|++|..+|-
T Consensus 40 ~Ly~~V~~~GG~~~V~~~~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~L~ 88 (96)
T 2jxj_A 40 ALSKIVASKGGFEMVTKEKKWSKVGSRLGYLPGKGTGSLLKSHYERILY 88 (96)
T ss_dssp HHHHHHHHHHTTHHHHHHTTHHHHHHHHTCCSCSCHHHHHHHHHTTTTH
T ss_pred HHHHHHHHcCCHHHHccCCcHHHHHHHhCCCCcCcHHHHHHHHHHHHHH
Confidence 3555666665 479999999722 1 24577777766554
No 149
>2of5_H Leucine-rich repeat and death domain-containing protein; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=25.95 E-value=75 Score=25.34 Aligned_cols=31 Identities=26% Similarity=0.634 Sum_probs=24.4
Q ss_pred HHHHHHHHHhhCCCHHHHHhhCCCCCHHHHHH
Q 041991 77 VATIIQLHGLFGNKWAAIASHLPGRTDNDIKN 108 (325)
Q Consensus 77 D~~Ll~l~~~~G~kWs~IA~~LpGRT~nq~Kn 108 (325)
+..|..+....|..|..+|..| |=+..+|..
T Consensus 13 ~~~l~~ia~~lg~dWk~LAr~L-g~s~~~I~~ 43 (118)
T 2of5_H 13 QSNLLSVAGRLGLDWPAVALHL-GVSYREVQR 43 (118)
T ss_dssp HHHHHHHHHTCCTTHHHHHHHT-TCCHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHc-CCCHHHHHH
Confidence 4567777789999999999999 766766644
No 150
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=25.36 E-value=98 Score=23.18 Aligned_cols=33 Identities=12% Similarity=-0.019 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHhhCCCHHHHHhhCCCCCHHHHHH
Q 041991 75 EEVATIIQLHGLFGNKWAAIASHLPGRTDNDIKN 108 (325)
Q Consensus 75 EED~~Ll~l~~~~G~kWs~IA~~LpGRT~nq~Kn 108 (325)
-|.+.|.+++.++|++.++.|+.| |=+...+..
T Consensus 51 ~E~~~i~~aL~~~~gn~~~aA~~L-GIsr~tL~r 83 (91)
T 1ntc_A 51 LERTLLTTALRHTQGHKQEAARLL-GWGAATLTA 83 (91)
T ss_dssp HHHHHHHHHHHHTTTCTTHHHHHT-TCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHH-CcCHHHHHH
Confidence 477888899999999999999999 766655543
No 151
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=25.07 E-value=1.2e+02 Score=18.40 Aligned_cols=38 Identities=13% Similarity=0.223 Sum_probs=27.9
Q ss_pred CCChHHHHHHHHHHHhhCCCHHHHHhhCCCCCHHHHHHHH
Q 041991 71 PFAPEEVATIIQLHGLFGNKWAAIASHLPGRTDNDIKNLW 110 (325)
Q Consensus 71 ~WT~EED~~Ll~l~~~~G~kWs~IA~~LpGRT~nq~KnRW 110 (325)
..+.++-..++.++ .-|.....||+.| |-+...|+.+.
T Consensus 5 ~l~~~~~~~i~~~~-~~g~s~~~IA~~l-gis~~Tv~~~~ 42 (51)
T 1tc3_C 5 ALSDTERAQLDVMK-LLNVSLHEMSRKI-SRSRHCIRVYL 42 (51)
T ss_dssp CCCHHHHHHHHHHH-HTTCCHHHHHHHH-TCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHH-HcCCCHHHHHHHH-CcCHHHHHHHH
Confidence 45666666777665 4577899999999 88888776643
No 152
>2o71_A Death domain-containing protein cradd; raidd, apoptosis; 2.00A {Homo sapiens}
Probab=24.76 E-value=86 Score=25.12 Aligned_cols=28 Identities=32% Similarity=0.542 Sum_probs=21.8
Q ss_pred HHHHHHHhhCCCHHHHHhhCCCCCHHHHH
Q 041991 79 TIIQLHGLFGNKWAAIASHLPGRTDNDIK 107 (325)
Q Consensus 79 ~Ll~l~~~~G~kWs~IA~~LpGRT~nq~K 107 (325)
.|..+....|..|..+|+.| |=+..+|.
T Consensus 26 ~l~~Ia~~LG~~Wk~LAR~L-Glse~dId 53 (115)
T 2o71_A 26 QINQLAQRLGPEWEPMVLSL-GLSQTDIY 53 (115)
T ss_dssp HHHHHHHHCCTTHHHHHHHT-TCCHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHc-CCCHHHHH
Confidence 45666788999999999998 66666553
No 153
>2of5_A Death domain-containing protein cradd; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=24.34 E-value=82 Score=25.21 Aligned_cols=28 Identities=32% Similarity=0.542 Sum_probs=21.9
Q ss_pred HHHHHHHhhCCCHHHHHhhCCCCCHHHHH
Q 041991 79 TIIQLHGLFGNKWAAIASHLPGRTDNDIK 107 (325)
Q Consensus 79 ~Ll~l~~~~G~kWs~IA~~LpGRT~nq~K 107 (325)
.|..+....|..|..+|+.| |=+..+|.
T Consensus 26 ~l~~Ia~~lG~~Wk~LAR~L-Glse~dId 53 (114)
T 2of5_A 26 QINQLAQRLGPEWEPMVLSL-GLSQTDIY 53 (114)
T ss_dssp HHHHHHHTCCSTHHHHHHTT-TCCHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHc-CCCHHHHH
Confidence 45566788999999999998 76666553
No 154
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=22.37 E-value=1e+02 Score=25.79 Aligned_cols=45 Identities=16% Similarity=0.083 Sum_probs=35.3
Q ss_pred hHHHHHHHHHHHhhC-CCHHHHHhhCCCCCHHHHHHHHHHHHHHHHh
Q 041991 74 PEEVATIIQLHGLFG-NKWAAIASHLPGRTDNDIKNLWNTRLKKHLQ 119 (325)
Q Consensus 74 ~EED~~Ll~l~~~~G-~kWs~IA~~LpGRT~nq~KnRW~t~lkkkl~ 119 (325)
.+-|..|+++..+.| -.+..||+.+ |-+...|..|++.+.+..+.
T Consensus 26 d~~d~~IL~~L~~~~~~s~~eLA~~l-glS~~tv~~rl~~L~~~G~I 71 (171)
T 2e1c_A 26 DEIDKKIIKILQNDGKAPLREISKIT-GLAESTIHERIRKLRESGVI 71 (171)
T ss_dssp CHHHHHHHHHHHHCTTCCHHHHHHHH-TSCHHHHHHHHHHHHHTTSS
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCe
Confidence 355677788777766 4599999999 88999999999777766543
No 155
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=21.06 E-value=1.3e+02 Score=24.12 Aligned_cols=44 Identities=16% Similarity=0.090 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHhhC-CCHHHHHhhCCCCCHHHHHHHHHHHHHHHHh
Q 041991 75 EEVATIIQLHGLFG-NKWAAIASHLPGRTDNDIKNLWNTRLKKHLQ 119 (325)
Q Consensus 75 EED~~Ll~l~~~~G-~kWs~IA~~LpGRT~nq~KnRW~t~lkkkl~ 119 (325)
+-|..|+.+..+.| -.+..||+.+ |-+...|..+++.+....+-
T Consensus 7 ~~~~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G~i 51 (151)
T 2cyy_A 7 EIDKKIIKILQNDGKAPLREISKIT-GLAESTIHERIRKLRESGVI 51 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHH-CSCHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCe
Confidence 34566777777766 4699999999 88999999999887776553
No 156
>1wxp_A THO complex subunit 1; death domain, structural genomics, nuclear matrix, riken structural genomics/proteomics initiative, RSGI, transport protein; NMR {Homo sapiens}
Probab=20.74 E-value=1e+02 Score=24.09 Aligned_cols=31 Identities=23% Similarity=0.439 Sum_probs=23.4
Q ss_pred HHHHHHHHHhhCCCHHHHHhhCCCCCHHHHHH
Q 041991 77 VATIIQLHGLFGNKWAAIASHLPGRTDNDIKN 108 (325)
Q Consensus 77 D~~Ll~l~~~~G~kWs~IA~~LpGRT~nq~Kn 108 (325)
+..|..+....|..|..+|++| |=+..+|.+
T Consensus 18 ~~~~~~ia~~lg~~Wk~LAr~L-g~~~~~I~~ 48 (110)
T 1wxp_A 18 GEQIEVFANKLGEQWKILAPYL-EMKDSEIRQ 48 (110)
T ss_dssp HHHHHHHHHHHTTTHHHHTTTT-TCCHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHh-CCCHHHHHH
Confidence 4455666778899999999999 766666644
No 157
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=20.67 E-value=2.3e+02 Score=22.30 Aligned_cols=38 Identities=16% Similarity=0.191 Sum_probs=31.1
Q ss_pred CCCCChHHHHHHHHHHHhhCCCHHHHHhhCCCCCHHHHHH
Q 041991 69 RGPFAPEEVATIIQLHGLFGNKWAAIASHLPGRTDNDIKN 108 (325)
Q Consensus 69 rg~WT~EED~~Ll~l~~~~G~kWs~IA~~LpGRT~nq~Kn 108 (325)
...++.++-..++.++. -|.....||+.| |.+...|.+
T Consensus 30 ~~~~s~e~r~~iv~~~~-~G~s~~~iA~~l-gis~~TV~r 67 (149)
T 1k78_A 30 GRPLPDVVRQRIVELAH-QGVRPCDISRQL-RVSHGCVSK 67 (149)
T ss_dssp TSCCCHHHHHHHHHHHH-TTCCHHHHHHHH-TCCHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH-cCCCHHHHHHHH-CcCHHHHHH
Confidence 34688999889998885 588899999999 788877765
No 158
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=20.08 E-value=2.7e+02 Score=20.47 Aligned_cols=51 Identities=12% Similarity=0.206 Sum_probs=34.0
Q ss_pred CCCCCChHHHHHHHHHHHhh-----CC--CHHHHHhhCCCCCHHHHHHHHHHHHHHHHhh
Q 041991 68 KRGPFAPEEVATIIQLHGLF-----GN--KWAAIASHLPGRTDNDIKNLWNTRLKKHLQS 120 (325)
Q Consensus 68 krg~WT~EED~~Ll~l~~~~-----G~--kWs~IA~~LpGRT~nq~KnRW~t~lkkkl~~ 120 (325)
++..||.+.-..|.....++ -. .=..||..+ |=+..+|++ |...-+.+.++
T Consensus 10 ~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~-gLs~~qV~~-WFqNrR~r~k~ 67 (83)
T 2dmn_A 10 RKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKT-NLSLLQISN-WFINARRRILP 67 (83)
T ss_dssp CCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHH-CCCHHHHHH-HHHHHHHHTHH
T ss_pred CCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHH-CcCHHHhhH-HhhhhHhhhcH
Confidence 45678888888888777654 21 246677777 889999998 44444444433
Done!