BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041993
(391 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1BHE|A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora
Length = 376
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 87/278 (31%), Positives = 128/278 (46%), Gaps = 54/278 (19%)
Query: 118 TLNSGI-----LDGQG--------TALWA------CKNSGKNCPSGATSMGFSNCNNIAI 158
T NSGI +DGQG + W K +N P + + N +
Sbjct: 108 TTNSGIYGPGTIDGQGGVKLQDKKVSWWELAADAKVKKLKQNTPR---LIQINKSKNFTL 164
Query: 159 NGLTSLNSQMYHVVFNGCNNVKLKGVKVLASGNSPNTDGIHVQLSSDVTILNTRISTGDD 218
++ +NS +HVVF+ + + + NTDGI S ++TI + I+TGDD
Sbjct: 165 YNVSLINSPNFHVVFSDGDGFTAWKTTIKTPSTARNTDGIDPMSSKNITIAYSNIATGDD 224
Query: 219 CVSIG-----PGTSNLWIENVACGPGHGISIGSLGKDLNEAGVQNVTVKTVTFTGTQNGL 273
V+I T N+ I + G GHG+SIGS GV NVTV + GT NGL
Sbjct: 225 NVAIKAYKGRAETRNISILHNDFGTGHGMSIGS-----ETMGVYNVTVDDLKMNGTTNGL 279
Query: 274 RIKSWGRPSNGFARNILFRNAIMKNVQNPIIIDQNY-------CPDNIGCPGQVSGVKIS 326
RIKS + + G + + N +MKNV PI+ID Y PD S
Sbjct: 280 RIKS-DKSAAGVVNGVRYSNVVMKNVAKPIVIDTVYEKKEGSNVPD------------WS 326
Query: 327 DVTYQDVHGTSATEVAVNFDCSSKYPCSRIRLEDVKLT 364
D+T++DV + V +N + ++K P + +++VKLT
Sbjct: 327 DITFKDVTSETKGVVVLNGE-NAKKPI-EVTMKNVKLT 362
>pdb|1RMG|A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus
Length = 422
Score = 84.7 bits (208), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 86/344 (25%), Positives = 154/344 (44%), Gaps = 35/344 (10%)
Query: 28 NVVSFGAKPDGRTDSTKAFLSAWANACGSPRAATIYVPPGRFFLRN-VAFQGPCKNNRIT 86
N++S+GA D TD A SAWA AC S +Y+P G + L V G +
Sbjct: 22 NILSYGAVADNSTDVGPAITSAWA-ACKS--GGLVYIPSGNYALNTWVTLTG---GSATA 75
Query: 87 IRIDGTLVAPSDYRVIGNAGNWLFFQHVDGVTLNS----GILDGQGTALWACKNSGKNCP 142
I++DG + YR +GN + L S G + G G A
Sbjct: 76 IQLDGII-----YRTGTASGNMIAVTDTTDFELFSSTSKGAVQGFGYVYHA------EGT 124
Query: 143 SGATSMGFSNCNNIAINGLTSLNSQMYHVVFNGCNNVKLKGVKVLASGNSPNTDGIHVQL 202
GA + ++ + +++ + +++ +H + C++ ++ + + GN DGI V
Sbjct: 125 YGARILRLTDVTHFSVHDIILVDAPAFHFTMDTCSDGEVYNMAIRG-GNEGGLDGIDVW- 182
Query: 203 SSDVTILNTRISTGDDCVSIGPGTSNLWIENVACGPGHGISIGSLGKDLNEAGVQNVTVK 262
S++ + + ++ D+CV++ +N+ +E++ C G ++GSLG D + V ++ +
Sbjct: 183 GSNIWVHDVEVTNKDECVTVKSPANNILVESIYCNWSGGCAMGSLGADTD---VTDIVYR 239
Query: 263 TVTFTGTQNGLRIKSWGRPSNGFARNILFRNAIMKNVQNPIIIDQNYCPDNIGCPGQVSG 322
V + IKS G +G N+L N I + ID Y G G
Sbjct: 240 NVYTWSSNQMYMIKSNG--GSGTVSNVLLENFIGHGNAYSLDID-GYWSSMTAVAGD--G 294
Query: 323 VKISDVTYQDVHGTS---ATEVAVNFDCSSKYPCSRIRLEDVKL 363
V+++++T ++ GT AT + CS PC+ + LED+ +
Sbjct: 295 VQLNNITVKNWKGTEANGATRPPIRVVCSDTAPCTDLTLEDIAI 338
>pdb|1CZF|A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger
pdb|1CZF|B Chain B, Endo-Polygalacturonase Ii From Aspergillus Niger
Length = 362
Score = 75.1 bits (183), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 96/192 (50%), Gaps = 18/192 (9%)
Query: 194 NTDGIHVQLSSDVTILNTRISTGDDCVSIGPGTSNLWIENVACGPGHGISIGSLGKDLNE 253
NTD V S V I+ + DDC+++ G N+W C GHG+SIGS+G N
Sbjct: 178 NTDAFDVGNSVGVNIIKPWVHNQDDCLAVNSG-ENIWFTGGTCIGGHGLSIGSVGDRSNN 236
Query: 254 AGVQNVTVKTVTFTGTQNGLRIKSWGRPSNGFARNILFRNAIMKNVQN-PIIIDQNYCPD 312
V+NVT++ T + ++N +RIK+ + G I + N +M + + ++I Q+Y D
Sbjct: 237 V-VKNVTIEHSTVSNSENAVRIKTI-SGATGSVSEITYSNIVMSGISDYGVVIQQDY-ED 293
Query: 313 NIGCPGQVSGVKISDVTYQDVHG---TSATEVAVNFDCSSKYPCSRIRLEDVKLT----- 364
+GV I DV + V G + ATE+ + C S CS +DVK+T
Sbjct: 294 GKPTGKPTNGVTIQDVKLESVTGSVDSGATEIYLL--CGSG-SCSDWTWDDVKVTGGKKS 350
Query: 365 --YKNQPAAASC 374
KN P+ ASC
Sbjct: 351 TACKNFPSVASC 362
>pdb|1IA5|A Chain A, Polygalacturonase From Aspergillus Aculeatus
pdb|1IB4|A Chain A, Crystal Structure Of Polygalacturonase From Aspergillus
Aculeatus At Ph4.5
pdb|1IB4|B Chain B, Crystal Structure Of Polygalacturonase From Aspergillus
Aculeatus At Ph4.5
Length = 339
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 76/268 (28%), Positives = 125/268 (46%), Gaps = 29/268 (10%)
Query: 124 LDGQGTALWACK--NSGKNCPSGATSMGFSNCNNIAINGLTSLNSQMYHVVFNGCNNVKL 181
++G G+ W + N GK P + +N I+GL +NS + G + + L
Sbjct: 84 INGDGSRWWDGEGGNGGKTKPKFFAAHSLTNS---VISGLKIVNSPVQVFSVAGSDYLTL 140
Query: 182 KGVKVLASGNSPN----TDGIHVQLSSDVTILNTRISTGDDCVSIGPGTSNLWIENVACG 237
K + + S N TD + S+ VTI + DDCV++ G N++ C
Sbjct: 141 KDITIDNSDGDDNGGHNTDAFDIGTSTYVTISGATVYNQDDCVAVNSG-ENIYFSGGYCS 199
Query: 238 PGHGISIGSLGKDLNEAGVQNVTVKTVTFTGTQNGLRIKSWGRPSNGFARNILFRNAIMK 297
GHG+SIGS+G + V+NVT T + NG+RIK+ + G ++ +++ +
Sbjct: 200 GGHGLSIGSVGGRSDNT-VKNVTFVDSTIINSDNGVRIKT-NIDTTGSVSDVTYKDITLT 257
Query: 298 NV-QNPIIIDQNYCPDNIGCPGQVSGVKISDVTYQDVHG---TSATEVAVNFDCSSKYPC 353
++ + I++ QNY D P +GV I+D +VHG +S T + ++ C S C
Sbjct: 258 SIAKYGIVVQQNY-GDTSSTP--TTGVPITDFVLDNVHGSVVSSGTNILIS--CGSG-SC 311
Query: 354 SRIRLEDVKLTY-------KNQPAAASC 374
S DV ++ N P+ ASC
Sbjct: 312 SDWTWTDVSVSGGKTSSKCTNVPSGASC 339
>pdb|1NHC|A Chain A, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
pdb|1NHC|B Chain B, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
pdb|1NHC|C Chain C, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
pdb|1NHC|D Chain D, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
pdb|1NHC|E Chain E, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
pdb|1NHC|F Chain F, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
Length = 336
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 84/276 (30%), Positives = 130/276 (47%), Gaps = 29/276 (10%)
Query: 117 VTLNSG-ILDGQGTALWACK--NSGKNCPSGATSMGFSNCNNIAINGLTSLNSQMYHVVF 173
VT+ G ++DG G+ W K N GK P M + + G+ N+ + +
Sbjct: 72 VTMADGAVIDGDGSRWWDSKGTNGGKTKPK---FMYIHDVEDSTFKGINIKNTPVQAISV 128
Query: 174 NGCNNVKLKGVKVLASGNSPN----TDGIHVQLSSDVTILNTRISTGDDCVSIGPGTSNL 229
NV L + S N TDG + S+ V I + DDC++I G S +
Sbjct: 129 Q-ATNVHLNDFTIDNSDGDDNGGHNTDGFDISESTGVYISGATVKNQDDCIAINSGES-I 186
Query: 230 WIENVACGPGHGISIGSL-GKDLNEAGVQNVTVKTVTFTGTQNGLRIKSWGRPSNGFARN 288
C GHG+SIGS+ G+D N V+NVT+ T + + NG+RIK+ + + G
Sbjct: 187 SFTGGTCSGGHGLSIGSVGGRDDNT--VKNVTISDSTVSNSANGVRIKTIYKET-GDVSE 243
Query: 289 ILFRNAIMKNVQN-PIIIDQNYCPDN-IGCPGQVSGVKISDVTYQDVHGT---SATEVAV 343
I + N + + + I+I+Q+Y + G P +G+ I+DVT V GT AT+V +
Sbjct: 244 ITYSNIQLSGITDYGIVIEQDYENGSPTGTPS--TGIPITDVTVDGVTGTLEDDATQVYI 301
Query: 344 ---NFDCSSKYPCSRIRLEDVKLTYK--NQPAAASC 374
+ C S + S + L K + K N P+ ASC
Sbjct: 302 LCGDGSC-SDWTWSGVDLSGGKTSDKCENVPSGASC 336
>pdb|1HG8|A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus
Fusarium Moniliforme
Length = 349
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 75/238 (31%), Positives = 116/238 (48%), Gaps = 29/238 (12%)
Query: 123 ILDGQGTALWACKNSGKNCPSGATSMGFSNCNNIAING-LTSLNSQMYHVV---FNGCNN 178
++DG G A W K G N S F N +T+LN Q + V G +
Sbjct: 80 VIDGNGQAYWDGK--GSNSNSNQKPDHFIVVQKTTGNSKITNLNIQNWPVHCFDITGSSQ 137
Query: 179 VKLKGVKV---------LASGNSP---NTDGIHVQLSSDVTILNTRISTGDDCVSIGPGT 226
+ + G+ + SG+ P NTDG + S VT+ N + DDCV++ GT
Sbjct: 138 LTISGLILDNRAGDKPNAKSGSLPAAHNTDGFDISSSDHVTLDNNHVYNQDDCVAVTSGT 197
Query: 227 SNLWIENVACGPGHGISIGSLGKDLNEA--GVQNVTVKTVTFTGTQNGLRIKSWGRPSNG 284
N+ + N+ C GHG+SIGS+G + GVQ ++ + V +QNG RIKS + G
Sbjct: 198 -NIVVSNMYCSGGHGLSIGSVGGKSDNVVDGVQFLSSQVVN---SQNGCRIKS-NSGATG 252
Query: 285 FARNILFRNAIMKNVQN-PIIIDQNYCPDNIGCPGQ-VSGVKISDVTYQDVHGTSATE 340
N+ ++N + N+ + + Q+Y N G G+ +GVKIS++ + V GT A+
Sbjct: 253 TINNVTYQNIALTNISTYGVDVQQDYL--NGGPTGKPTNGVKISNIKFIKVTGTVASS 308
>pdb|1K5C|A Chain A, Endopolygalacturonase I From Stereum Purpureum At 0.96 A
Resolution
pdb|1KCC|A Chain A, Endopolygalacturonase I From Stereum Purpureum Complexed
With A Galacturonate At 1.00 A Resolution.
pdb|1KCD|A Chain A, Endopolygalacturonase I From Stereum Purpureum Complexed
With Two Galacturonate At 1.15 A Resolution
Length = 335
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 81/152 (53%), Gaps = 13/152 (8%)
Query: 194 NTDGIHVQLSSDVTILNTRISTGDDCVSIGPGTSNLWIENVACGPGHGISIGSLGKDLNE 253
NTDG V +++VTI N + DDC++I G +N+ EN C GHGISIGS+ +
Sbjct: 151 NTDGFDVS-ANNVTIQNCIVKNQDDCIAINDG-NNIRFENNQCSGGHGISIGSIATGKH- 207
Query: 254 AGVQNVTVKTVTFTGTQNGLRIKSWGRPSNGFARNILFR-NAIMKNVQNPIIIDQNYCPD 312
V NV +K T T + G+RIK+ ++ + + N I + ++I Q+Y PD
Sbjct: 208 --VSNVVIKGNTVTRSMYGVRIKAQRTATSASVSGVTYDANTISGIAKYGVLISQSY-PD 264
Query: 313 NIGCPGQVSGVKISDVTYQDVHGTSATEVAVN 344
++G PG +G SDV + AT + VN
Sbjct: 265 DVGNPG--TGAPFSDVNFTG----GATTIKVN 290
>pdb|2IQ7|A Chain A, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|B Chain B, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|C Chain C, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|D Chain D, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|E Chain E, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|F Chain F, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|G Chain G, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
Length = 339
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 72/254 (28%), Positives = 117/254 (46%), Gaps = 26/254 (10%)
Query: 124 LDGQGTALWACK--NSGKNCPSGATSMGFSNCNNIAINGLTSLNSQMYHVVFNGCNNVKL 181
+D QG+ W K N GK P + + N I GL LN+ + N + +
Sbjct: 80 IDCQGSRWWDSKGSNGGKTKPKFFYAHSLKSSN---IKGLNVLNTPVQAFSINSATTLGV 136
Query: 182 KGVKVL-ASGNSP---NTDGIHVQLSSDVTILNTRISTGDDCVSIGPGTSNLWIENVACG 237
V + ++G+S NTD V S+ V I + DDC++I GT N+ C
Sbjct: 137 YDVIIDNSAGDSAGGHNTDAFDVGSSTGVYISGANVKNQDDCLAINSGT-NITFTGGTCS 195
Query: 238 PGHGISIGSLGKDLNEAGVQNVTVKTVTFTGTQ-----NGLRIKSWGRPSNGFARNILFR 292
GHG+SIGS+G G + TVKTVT + ++ NG+RIK+ + G + +
Sbjct: 196 GGHGLSIGSVG------GRSDNTVKTVTISNSKIVNSDNGVRIKTV-SGATGSVSGVTYS 248
Query: 293 NAIMKNV-QNPIIIDQNYCPDN-IGCPGQVSGVKISDVTYQDVHGTSATEVAVNFDCSSK 350
+ N+ + I+I+Q+Y + G P +GV I+ +T + G+ A+ + +
Sbjct: 249 GITLSNIAKYGIVIEQDYENGSPTGTP--TNGVPITGLTLSKITGSVASSGTNVYILCAS 306
Query: 351 YPCSRIRLEDVKLT 364
CS + V +T
Sbjct: 307 GACSNWKWSGVSVT 320
>pdb|3JUR|A Chain A, The Crystal Structure Of A Hyperthermoactive
Exopolygalacturonase From Thermotoga Maritima
pdb|3JUR|B Chain B, The Crystal Structure Of A Hyperthermoactive
Exopolygalacturonase From Thermotoga Maritima
pdb|3JUR|C Chain C, The Crystal Structure Of A Hyperthermoactive
Exopolygalacturonase From Thermotoga Maritima
pdb|3JUR|D Chain D, The Crystal Structure Of A Hyperthermoactive
Exopolygalacturonase From Thermotoga Maritima
Length = 448
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 82/353 (23%), Positives = 128/353 (36%), Gaps = 101/353 (28%)
Query: 28 NVVSFGAKPDGRTDSTKAFLSAWANACGSPRAATIYVPPGRFFLRNVAFQGPCK-NNRIT 86
N++ FGA+ DGRTD +++F A + VP G F GP + I
Sbjct: 29 NLLDFGARGDGRTDCSESFKRA-IEELSKQGGGRLIVPEGVFL------TGPIHLKSNIE 81
Query: 87 IRIDGTLVAPSDYRVIGNAGNWL--FFQHVDGVTL------------------NSGILDG 126
+ + GT+ + I + +L +G+ L SG+LDG
Sbjct: 82 LHVKGTI------KFIPDPERYLPVVLTRFEGIELYNYSPLVYALDCENVAITGSGVLDG 135
Query: 127 QG--TALWACKNS----------------------------------GKNCPSGATSMGF 150
W K GK + + F
Sbjct: 136 SADNEHWWPWKGKKDFGWKEGLPNQQEDVKKLKEMAERGTPVEERVFGKGHYLRPSFVQF 195
Query: 151 SNCNNIAINGLTSLNSQMY--HVVFNGCNNVKLKGVKVLASGNSPNTDGIHVQLSSDVTI 208
C N+ + G+ +NS M+ H V + NV ++ +++ ++G PN DGI + + I
Sbjct: 196 YRCRNVLVEGVKIINSPMWCIHPVLS--ENVIIRNIEISSTG--PNNDGIDPESCKYMLI 251
Query: 209 LNTRISTGDDCVSIGPGTS-----------------NLWIENVACGPGHGISIGSLGKDL 251
R TGDD V I G NL I + G G+ IGS
Sbjct: 252 EKCRFDTGDDSVVIKSGRDADGRRIGVPSEYILVRDNLVISQASHG---GLVIGSEMS-- 306
Query: 252 NEAGVQNVTVKTVTFTGTQNGLRIKSWGRPSNGFARNILFRNAIMKNVQNPII 304
GV+NV + + + LR+K+ R G+ NI F + + NV +I
Sbjct: 307 --GGVRNVVARNNVYMNVERALRLKTNSR-RGGYMENIFFIDNVAVNVSEEVI 356
>pdb|2UVE|A Chain A, Structure Of Yersinia Enterocolitica Family 28
Exopolygalacturonase
pdb|2UVE|B Chain B, Structure Of Yersinia Enterocolitica Family 28
Exopolygalacturonase
pdb|2UVF|A Chain A, Structure Of Yersinia Enterocolitica Family 28
Exopolygalacturonase In Complex With Digalaturonic Acid
pdb|2UVF|B Chain B, Structure Of Yersinia Enterocolitica Family 28
Exopolygalacturonase In Complex With Digalaturonic Acid
Length = 608
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 59/237 (24%), Positives = 100/237 (42%), Gaps = 30/237 (12%)
Query: 148 MGFSNCNNIAINGLTSLNSQMYHVVFNGCNNVKLKGVKVLASGNSPNTDGIHVQLSSDVT 207
M N+ + G T N + ++ +NV G+ + + ++ N DGI S +V
Sbjct: 334 MTLRGVENVYLAGFTVRNPAFHGIMNLENHNVVANGL-IHQTYDANNGDGIEFGNSQNVM 392
Query: 208 ILNTRISTGDDCVSIGPGTSN----------LWIENVACGPGHG-ISIGSLGKDLNEAGV 256
+ N TGDDC++ GT W+ N GHG I GS A +
Sbjct: 393 VFNNFFDTGDDCINFAAGTGEKAQEQEPMKGAWLFNNYFRMGHGAIVTGS----HTGAWI 448
Query: 257 QNVTVKTVTFTGTQNGLRIKSWGRPSNGFARNILFRNAIMKNVQNPIII------DQN-- 308
+++ + T GLR KS G ARN+ FRN M+++ +++ D N
Sbjct: 449 EDILAENNVMYLTDIGLRAKSTSTIGGG-ARNVTFRNNAMRDLAKQVMVMTLDYADSNAN 507
Query: 309 --YCPDNIGCPGQVSGVKISDVTYQDVHGTSATEVAVNFDCSSKYPCSRIRLEDVKL 363
Y P I P Q + +VT + G + + + + D ++K + + +V+L
Sbjct: 508 IDYPPAKI--PAQFYDFTLKNVTVDNSTGKNPS-IEIKGDTANKAWHRLVHVNNVQL 561
>pdb|3EQN|A Chain A, Crystal Structure Of Beta-1,3-Glucanase From Phanerochaete
Chrysosporium (Lam55a)
pdb|3EQN|B Chain B, Crystal Structure Of Beta-1,3-Glucanase From Phanerochaete
Chrysosporium (Lam55a)
pdb|3EQO|A Chain A, Crystal Structure Of Beta-1,3-Glucanase From Phanerochaete
Chrysosporium (Lam55a) Gluconolactone Complex
pdb|3EQO|B Chain B, Crystal Structure Of Beta-1,3-Glucanase From Phanerochaete
Chrysosporium (Lam55a) Gluconolactone Complex
Length = 758
Score = 31.6 bits (70), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 10/55 (18%)
Query: 24 PPSYNVVSFGAKPDGRTDSTKAFLSAWANACG---------SPRAATIYVPPGRF 69
P NV ++GAK DG TD T A +A NA G + + A +Y PPG +
Sbjct: 47 PVFRNVKNYGAKGDGNTDDTAAIQAA-INAGGRCGQGCDSTTTQPALVYFPPGTY 100
>pdb|3SUC|A Chain A, Crystal Structure Of The Pre-Mature Bacteriophage Phi29
Gene Product 12
Length = 772
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 34/154 (22%), Positives = 63/154 (40%), Gaps = 29/154 (18%)
Query: 29 VVSFGAKPDGRTDSTKAFLSAWANACGSPRAATIYVPPGRFFL-------RNVAFQGPCK 81
V ++GAK DG TD +AF A G P +YVP G F + N G K
Sbjct: 25 VKTYGAKGDGVTDDIRAFEKAI--ESGFP----VYVPYGTFMVSRGIKLPSNTVLTGAGK 78
Query: 82 NNRITIRIDGTLVAPSDYRVIGNAGNWLFFQHV----DGVTLNSGILDGQGTALWACKNS 137
N + +D +G + ++ ++V + + L+S LDG L +
Sbjct: 79 RNAVIRFMDS----------VGRGESLMYNENVTTGNENIFLSSFTLDGNNKRLGQGISG 128
Query: 138 GKNCPSGATSMGFSNCNNIAINGLTSLNSQMYHV 171
+++ C+N+ I + +++ ++ +
Sbjct: 129 IGGSRE--SNLSIRACHNVYIRDIEAVDCTLHGI 160
>pdb|3GQ7|A Chain A, Crystal Structure Of The Bacteriophage Phi29 Gene
Product 12 N- Terminal Fragment
pdb|3GQ8|A Chain A, Crystal Structure Of The Bacteriophage Phi29 Gene
Product 12 N- Terminal Fragment In Complex With
2-(N-Cyclohexylamino)ethane Sulfonic Acid (Ches)
pdb|3GQ9|A Chain A, Crystal Structure Of The Bacteriophage Phi29 Gene
Product 12 N- Terminal Fragment In An Apo Form
pdb|3GQA|A Chain A, Crystal Structure Of The Bacteriophage Phi29 Gene
Product 12 N- Terminal Fragment In Complex With Cobalt
Ions
Length = 609
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 30/69 (43%), Gaps = 13/69 (18%)
Query: 29 VVSFGAKPDGRTDSTKAFLSAWANACGSPRAATIYVPPGRFFL-------RNVAFQGPCK 81
V ++GAK DG TD +AF A G P +YVP G F + N G K
Sbjct: 25 VKTYGAKGDGVTDDIRAFEKAI--ESGFP----VYVPYGTFMVSRGIKLPSNTVLTGAGK 78
Query: 82 NNRITIRID 90
N + +D
Sbjct: 79 RNAVIRFMD 87
>pdb|3BCN|A Chain A, Crystal Structure Of A Papain-Like Cysteine Protease
Ervatamin-A Complexed With Irreversible Inhibitor E-64
pdb|3BCN|B Chain B, Crystal Structure Of A Papain-Like Cysteine Protease
Ervatamin-A Complexed With Irreversible Inhibitor E-64
Length = 209
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 33/84 (39%), Gaps = 21/84 (25%)
Query: 75 AFQGPCKNNRITIRIDGTLVAP------------SDYRVIGNAGNWLFFQHVD------- 115
AFQGPC+ + +RIDG P S V+ + FQH
Sbjct: 91 AFQGPCRAAKKVVRIDGCKGVPQCNENALKNAVASQPSVVAIDASSKQFQHYKGGIFTGP 150
Query: 116 -GVTLNSG-ILDGQGTALWACKNS 137
G LN G ++ G G W +NS
Sbjct: 151 CGTKLNHGVVIVGYGKDYWIVRNS 174
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,949,284
Number of Sequences: 62578
Number of extensions: 516557
Number of successful extensions: 1151
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1109
Number of HSP's gapped (non-prelim): 27
length of query: 391
length of database: 14,973,337
effective HSP length: 101
effective length of query: 290
effective length of database: 8,652,959
effective search space: 2509358110
effective search space used: 2509358110
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)