Query 041993
Match_columns 391
No_of_seqs 176 out of 1657
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 12:54:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041993.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041993hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02155 polygalacturonase 100.0 6.6E-77 1.4E-81 576.7 47.6 378 13-391 14-392 (394)
2 PLN02793 Probable polygalactur 100.0 1E-74 2.2E-79 570.0 48.5 366 24-391 50-423 (443)
3 PLN02218 polygalacturonase ADP 100.0 1E-73 2.2E-78 560.4 46.1 365 19-391 60-431 (431)
4 PLN03010 polygalacturonase 100.0 1E-72 2.2E-77 548.4 47.9 358 20-391 40-403 (409)
5 PLN03003 Probable polygalactur 100.0 2E-72 4.2E-77 549.2 44.0 364 20-391 17-389 (456)
6 PLN02188 polygalacturonase/gly 100.0 3.1E-72 6.7E-77 546.4 44.1 367 22-391 32-404 (404)
7 PF00295 Glyco_hydro_28: Glyco 100.0 2E-56 4.4E-61 429.2 34.7 322 54-381 1-324 (326)
8 COG5434 PGU1 Endopygalactoruna 100.0 1.5E-40 3.3E-45 329.2 27.7 275 20-306 76-405 (542)
9 TIGR03808 RR_plus_rpt_1 twin-a 99.9 7.8E-25 1.7E-29 210.7 25.1 248 22-298 33-337 (455)
10 PF12708 Pectate_lyase_3: Pect 99.9 9.9E-21 2.1E-25 172.6 21.9 213 26-273 1-224 (225)
11 PLN02188 polygalacturonase/gly 99.8 3.4E-18 7.4E-23 167.4 30.5 220 84-338 123-377 (404)
12 PLN02793 Probable polygalactur 99.8 3.4E-18 7.4E-23 169.2 29.3 219 84-339 144-398 (443)
13 PLN02155 polygalacturonase 99.8 5.1E-18 1.1E-22 165.4 29.0 198 107-339 146-367 (394)
14 PF03718 Glyco_hydro_49: Glyco 99.8 5.7E-18 1.2E-22 164.8 28.3 275 59-367 232-555 (582)
15 PLN02218 polygalacturonase ADP 99.8 7.5E-18 1.6E-22 166.1 29.2 206 146-376 148-394 (431)
16 PLN03010 polygalacturonase 99.8 2.1E-17 4.5E-22 161.6 29.8 206 146-376 131-360 (409)
17 PLN03003 Probable polygalactur 99.8 1.9E-17 4.2E-22 162.8 29.5 206 146-376 105-343 (456)
18 PF00295 Glyco_hydro_28: Glyco 99.8 2.8E-17 6E-22 158.2 27.1 196 106-337 92-310 (326)
19 TIGR03805 beta_helix_1 paralle 99.8 1.1E-15 2.4E-20 146.0 27.5 197 46-299 1-203 (314)
20 COG5434 PGU1 Endopygalactoruna 99.3 2.7E-11 5.8E-16 121.4 16.3 154 167-338 237-398 (542)
21 PRK10123 wcaM putative colanic 99.2 1.6E-09 3.4E-14 98.4 18.9 227 20-296 28-282 (464)
22 TIGR03805 beta_helix_1 paralle 99.1 4.3E-08 9.2E-13 93.9 24.2 175 109-307 58-251 (314)
23 PF12541 DUF3737: Protein of u 99.0 3.7E-09 8E-14 95.2 13.2 134 113-273 96-229 (277)
24 PF12541 DUF3737: Protein of u 98.8 6.6E-08 1.4E-12 87.3 12.5 126 150-304 94-230 (277)
25 COG3420 NosD Nitrous oxidase a 98.8 3.2E-06 6.9E-11 78.8 22.1 150 106-276 69-222 (408)
26 PF13229 Beta_helix: Right han 98.7 1.4E-07 3E-12 80.5 11.5 140 147-306 2-145 (158)
27 PF03718 Glyco_hydro_49: Glyco 98.7 1.2E-05 2.5E-10 79.7 24.2 243 58-338 255-554 (582)
28 COG3866 PelB Pectate lyase [Ca 98.6 3.8E-06 8.2E-11 77.3 18.8 138 85-269 77-229 (345)
29 TIGR03808 RR_plus_rpt_1 twin-a 98.6 4.1E-06 8.9E-11 81.9 18.6 146 147-306 108-291 (455)
30 PF13229 Beta_helix: Right han 98.5 1.7E-06 3.6E-11 73.7 11.7 139 109-276 3-145 (158)
31 PF05048 NosD: Periplasmic cop 98.5 8.1E-06 1.7E-10 75.1 16.1 135 109-276 16-152 (236)
32 PF05048 NosD: Periplasmic cop 98.4 1.7E-05 3.6E-10 73.0 15.6 136 146-305 14-151 (236)
33 PF14592 Chondroitinas_B: Chon 98.4 0.00018 4E-09 70.4 23.0 33 42-77 3-35 (425)
34 PF07602 DUF1565: Protein of u 98.3 5.3E-05 1.1E-09 69.4 18.0 41 43-91 15-60 (246)
35 smart00656 Amb_all Amb_all dom 98.3 4.6E-05 1E-09 67.7 16.1 99 170-269 33-144 (190)
36 smart00656 Amb_all Amb_all dom 98.1 0.00017 3.8E-09 64.0 16.0 119 148-276 34-174 (190)
37 PLN02497 probable pectinestera 98.1 0.0012 2.6E-08 63.2 22.1 199 42-298 43-263 (331)
38 PLN02176 putative pectinestera 98.1 0.0023 5E-08 61.5 23.5 199 42-298 50-270 (340)
39 PLN02480 Probable pectinestera 98.0 0.00094 2E-08 64.4 20.3 201 40-298 57-276 (343)
40 PLN02773 pectinesterase 98.0 0.0016 3.5E-08 62.1 21.3 211 42-298 16-239 (317)
41 PF00544 Pec_lyase_C: Pectate 98.0 2.9E-05 6.3E-10 69.6 8.4 76 193-269 73-158 (200)
42 PLN02682 pectinesterase family 98.0 0.0028 6.1E-08 61.5 22.0 211 41-299 80-305 (369)
43 PF12708 Pectate_lyase_3: Pect 97.9 0.00099 2.2E-08 60.2 17.0 123 156-303 94-224 (225)
44 PLN02634 probable pectinestera 97.9 0.011 2.4E-07 57.1 24.5 206 42-298 67-290 (359)
45 PLN02170 probable pectinestera 97.8 0.0076 1.7E-07 61.1 23.5 205 42-298 236-451 (529)
46 PRK10531 acyl-CoA thioesterase 97.8 0.0067 1.5E-07 59.7 22.4 117 147-269 199-336 (422)
47 PLN02665 pectinesterase family 97.8 0.0065 1.4E-07 59.0 21.6 206 42-299 79-298 (366)
48 PLN02671 pectinesterase 97.7 0.0098 2.1E-07 57.6 21.0 208 42-299 70-295 (359)
49 PLN02916 pectinesterase family 97.7 0.0066 1.4E-07 61.3 19.9 209 42-299 198-426 (502)
50 PLN02708 Probable pectinestera 97.7 0.007 1.5E-07 62.2 20.5 151 42-237 252-409 (553)
51 COG3420 NosD Nitrous oxidase a 97.6 0.0013 2.8E-08 61.8 13.5 89 143-238 148-236 (408)
52 PLN02933 Probable pectinestera 97.6 0.013 2.9E-07 59.5 21.1 211 42-299 229-454 (530)
53 PLN02713 Probable pectinestera 97.6 0.012 2.6E-07 60.6 21.0 207 42-299 261-489 (566)
54 PLN02745 Putative pectinestera 97.6 0.015 3.3E-07 60.2 21.5 208 42-299 296-521 (596)
55 PF01095 Pectinesterase: Pecti 97.6 0.0052 1.1E-07 58.5 16.8 48 41-91 10-58 (298)
56 PLN02468 putative pectinestera 97.5 0.012 2.6E-07 60.7 20.4 209 42-299 269-490 (565)
57 PLN02201 probable pectinestera 97.5 0.021 4.6E-07 58.1 21.7 209 42-299 217-442 (520)
58 PLN02304 probable pectinestera 97.5 0.026 5.5E-07 55.0 20.8 203 42-298 86-311 (379)
59 PLN02484 probable pectinestera 97.5 0.028 6E-07 58.3 21.7 208 42-299 283-509 (587)
60 PLN02995 Probable pectinestera 97.5 0.022 4.8E-07 58.4 20.8 211 42-299 234-461 (539)
61 PLN03043 Probable pectinestera 97.4 0.033 7.1E-07 57.2 21.4 207 42-299 234-462 (538)
62 PLN02488 probable pectinestera 97.4 0.05 1.1E-06 54.9 21.6 211 41-298 207-432 (509)
63 PLN02197 pectinesterase 97.4 0.039 8.5E-07 57.0 21.5 214 42-299 286-514 (588)
64 PLN02416 probable pectinestera 97.4 0.03 6.5E-07 57.5 20.5 208 42-298 241-465 (541)
65 PLN02506 putative pectinestera 97.4 0.017 3.8E-07 59.0 18.8 204 42-298 243-458 (537)
66 PLN02432 putative pectinestera 97.3 0.079 1.7E-06 50.1 21.1 199 42-298 22-229 (293)
67 PLN02314 pectinesterase 97.3 0.037 8E-07 57.4 20.6 209 42-299 289-509 (586)
68 PLN02217 probable pectinestera 97.3 0.043 9.4E-07 57.4 20.8 211 42-299 261-486 (670)
69 PLN02990 Probable pectinestera 97.3 0.054 1.2E-06 56.0 21.2 212 42-299 270-496 (572)
70 PF00544 Pec_lyase_C: Pectate 97.2 0.0082 1.8E-07 53.8 13.2 116 151-276 43-188 (200)
71 PLN02313 Pectinesterase/pectin 97.2 0.054 1.2E-06 56.2 20.5 208 42-298 286-510 (587)
72 PLN02301 pectinesterase/pectin 97.2 0.061 1.3E-06 55.2 20.6 209 42-299 247-472 (548)
73 COG3866 PelB Pectate lyase [Ca 96.8 0.026 5.6E-07 52.5 12.3 123 148-299 95-229 (345)
74 PF12218 End_N_terminal: N ter 96.6 0.0028 6E-08 44.2 3.7 41 34-77 1-41 (67)
75 PF01696 Adeno_E1B_55K: Adenov 96.3 1.2 2.7E-05 43.4 23.2 169 29-241 46-222 (386)
76 COG4677 PemB Pectin methyleste 95.6 0.18 4E-06 47.5 11.5 47 41-91 92-141 (405)
77 PF03211 Pectate_lyase: Pectat 95.2 2.3 4.9E-05 38.3 16.6 40 195-236 75-115 (215)
78 PF03211 Pectate_lyase: Pectat 94.6 1.6 3.5E-05 39.2 14.2 134 152-293 59-194 (215)
79 TIGR03804 para_beta_helix para 93.9 0.085 1.8E-06 34.6 3.4 39 197-236 1-39 (44)
80 PF01696 Adeno_E1B_55K: Adenov 93.6 5.5 0.00012 39.0 16.6 107 152-276 119-227 (386)
81 TIGR03804 para_beta_helix para 92.5 0.22 4.8E-06 32.6 3.8 40 171-215 2-41 (44)
82 PF07602 DUF1565: Protein of u 91.8 6.9 0.00015 36.1 14.0 135 171-338 91-227 (246)
83 PF09251 PhageP22-tail: Salmon 91.2 11 0.00024 37.2 15.0 22 226-247 263-286 (549)
84 PLN02682 pectinesterase family 90.9 17 0.00037 35.6 22.3 113 174-299 160-280 (369)
85 PLN02665 pectinesterase family 89.3 7.4 0.00016 38.1 12.5 115 173-300 150-273 (366)
86 PLN02480 Probable pectinestera 89.1 8.6 0.00019 37.3 12.8 111 175-299 130-252 (343)
87 PLN02468 putative pectinestera 87.8 14 0.00031 38.4 14.2 114 175-300 343-461 (565)
88 PLN02170 probable pectinestera 87.8 19 0.00041 37.0 14.7 116 173-300 309-428 (529)
89 PLN02698 Probable pectinestera 86.9 16 0.00035 37.4 13.7 139 150-298 266-418 (497)
90 PRK10531 acyl-CoA thioesterase 86.4 35 0.00075 34.1 15.3 117 173-300 202-337 (422)
91 PRK10123 wcaM putative colanic 86.4 2.2 4.8E-05 39.7 6.5 19 226-244 300-318 (464)
92 PLN02217 probable pectinestera 85.5 12 0.00025 39.7 12.1 114 175-300 335-453 (670)
93 PLN02713 Probable pectinestera 85.2 16 0.00034 38.1 12.8 114 175-300 338-456 (566)
94 PLN02301 pectinesterase/pectin 85.2 17 0.00036 37.7 12.9 114 175-300 321-439 (548)
95 PLN02201 probable pectinestera 85.2 24 0.00053 36.3 14.0 115 174-300 290-409 (520)
96 PLN02488 probable pectinestera 85.2 25 0.00055 35.9 13.9 114 175-300 282-400 (509)
97 PLN02416 probable pectinestera 84.9 16 0.00035 37.8 12.6 113 175-299 315-432 (541)
98 PLN02995 Probable pectinestera 84.7 15 0.00031 38.1 12.2 114 175-300 310-428 (539)
99 PLN03043 Probable pectinestera 84.6 24 0.00051 36.6 13.8 115 174-300 310-429 (538)
100 PLN02990 Probable pectinestera 84.6 27 0.00059 36.4 14.3 114 175-300 345-463 (572)
101 PLN02432 putative pectinestera 84.0 22 0.00047 33.8 12.2 111 175-299 92-205 (293)
102 PLN02314 pectinesterase 83.9 20 0.00043 37.6 12.9 114 174-300 362-481 (586)
103 PLN02304 probable pectinestera 83.8 43 0.00093 33.0 14.4 112 175-299 160-287 (379)
104 PLN02745 Putative pectinestera 83.6 40 0.00086 35.4 15.0 114 175-300 370-488 (596)
105 PLN02671 pectinesterase 83.1 48 0.001 32.4 14.4 112 175-299 152-270 (359)
106 PLN02484 probable pectinestera 83.0 32 0.0007 36.0 14.1 115 174-300 357-476 (587)
107 PLN02197 pectinesterase 82.4 28 0.0006 36.5 13.2 114 175-300 362-481 (588)
108 PLN02698 Probable pectinestera 82.1 49 0.0011 34.0 14.7 114 175-300 268-386 (497)
109 PLN02176 putative pectinestera 82.0 24 0.00053 34.2 11.9 112 175-299 120-246 (340)
110 PLN02497 probable pectinestera 81.5 19 0.00042 34.7 11.0 114 174-299 112-239 (331)
111 PLN02773 pectinesterase 80.2 51 0.0011 31.7 13.3 114 174-300 99-213 (317)
112 PF08480 Disaggr_assoc: Disagg 79.5 19 0.00041 31.5 9.0 63 204-271 2-78 (198)
113 PLN02634 probable pectinestera 79.2 44 0.00095 32.7 12.6 112 175-299 147-266 (359)
114 PF09251 PhageP22-tail: Salmon 78.4 37 0.0008 33.7 11.6 67 203-276 263-353 (549)
115 PF14592 Chondroitinas_B: Chon 76.2 11 0.00024 37.5 7.7 112 178-304 165-293 (425)
116 PF08480 Disaggr_assoc: Disagg 74.3 60 0.0013 28.5 12.1 93 203-300 33-144 (198)
117 PF01095 Pectinesterase: Pecti 64.4 73 0.0016 30.3 10.3 136 149-299 82-236 (298)
118 PLN02916 pectinesterase family 55.4 2.5E+02 0.0054 28.9 12.8 115 174-300 274-393 (502)
119 smart00722 CASH Domain present 54.6 1.1E+02 0.0024 24.5 11.6 68 151-221 73-144 (146)
120 smart00710 PbH1 Parallel beta- 52.1 16 0.00034 19.8 2.3 19 258-276 3-22 (26)
121 PLN02313 Pectinesterase/pectin 50.6 2.6E+02 0.0057 29.4 12.4 114 175-300 360-478 (587)
122 PLN02708 Probable pectinestera 49.7 3.3E+02 0.0071 28.5 13.3 114 175-300 328-450 (553)
123 PLN02506 putative pectinestera 46.9 2.8E+02 0.0061 28.8 11.8 115 173-299 315-434 (537)
124 PF08194 DIM: DIM protein; In 45.6 31 0.00068 21.6 2.9 14 1-14 1-14 (36)
125 PF10162 G8: G8 domain; Inter 38.2 1E+02 0.0023 25.0 5.9 54 58-125 11-65 (125)
126 PLN02933 Probable pectinestera 37.8 4.9E+02 0.011 27.1 12.9 116 173-300 301-421 (530)
127 PF11912 DUF3430: Protein of u 30.6 54 0.0012 29.1 3.4 30 1-33 1-30 (212)
128 PF12099 DUF3575: Protein of u 26.4 70 0.0015 28.2 3.2 29 1-29 1-29 (189)
129 KOG1777 Putative Zn-finger pro 26.0 94 0.002 31.1 4.2 29 196-224 419-447 (625)
130 PF07172 GRP: Glycine rich pro 24.9 50 0.0011 25.7 1.8 9 15-23 16-24 (95)
131 COG4704 Uncharacterized protei 23.1 1.5E+02 0.0034 24.5 4.3 36 40-75 59-95 (151)
132 COG4677 PemB Pectin methyleste 21.9 2.8E+02 0.006 26.8 6.3 40 150-189 185-233 (405)
133 smart00722 CASH Domain present 21.8 4.1E+02 0.0089 21.0 8.5 13 153-165 44-56 (146)
134 PHA00672 hypothetical protein 21.8 1.6E+02 0.0035 24.1 4.1 18 60-77 50-67 (152)
No 1
>PLN02155 polygalacturonase
Probab=100.00 E-value=6.6e-77 Score=576.70 Aligned_cols=378 Identities=54% Similarity=1.031 Sum_probs=344.9
Q ss_pred HHHHHhccCCCCCeEEeecCCccCCCCcccHHHHHHHHHHHcCCCCCcEEEEcCCeEEEeeeeeeCCccCccEEEEEccE
Q 041993 13 LSIFNTSSLAAPPSYNVVSFGAKPDGRTDSTKAFLSAWANACGSPRAATIYVPPGRFFLRNVAFQGPCKNNRITIRIDGT 92 (391)
Q Consensus 13 ~~~~~~~~~~~~~~~~v~d~Ga~~dg~~d~t~aiq~Ai~~a~~~~~g~~v~ip~G~Y~~~~~~l~~~~~s~~~~l~~~G~ 92 (391)
|+.+...+..+++++||+||||++||.+|+|+|||+||++||++.+|++|+||+|+|+++++.|.++||| +++|+++|+
T Consensus 14 ~~~~~~~~~~~~~~~nv~~yGA~gDG~td~t~Ai~~Ai~~aC~~~gGg~v~vP~G~yl~g~i~l~gpcks-nv~l~l~G~ 92 (394)
T PLN02155 14 LLTFIDVSSSASNVFNVVSFGAKPDGVTDSTAAFLKAWQGACGSASSATVVVPTGTFLLKVITFGGPCKS-KITFQVAGT 92 (394)
T ss_pred HHHHhhccccCCcEEEhhhcCcCCCCccccHHHHHHHHHHHcccCCCeEEEECCCcEEEEEEEEcccCCC-CceEEEeeE
Confidence 3444556677889999999999999999999999999977799889999999999999999999999999 999999999
Q ss_pred EEeccCccccCCCCceEEEEeeeeeEEeceeEeCCCccccccccCCCCCCCCCeeEEEEeecceEEEeEEEecCCceeEE
Q 041993 93 LVAPSDYRVIGNAGNWLFFQHVDGVTLNSGILDGQGTALWACKNSGKNCPSGATSMGFSNCNNIAINGLTSLNSQMYHVV 172 (391)
Q Consensus 93 l~~~~~~~~~~~~~~~i~~~~~~ni~I~GG~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~n~~~~~i~ 172 (391)
|.++.++..|.....|+.+.+++|+.|.||+|||+|+.||.....+.....+|+++.|.+|+|++|++++++|+|.|+++
T Consensus 93 l~~~~d~~~~~~~~~wi~~~~~~~i~i~GG~iDGqG~~ww~~~~~~~~~~~~p~~i~~~~~~nv~i~gitl~nSp~w~i~ 172 (394)
T PLN02155 93 VVAPEDYRTFGNSGYWILFNKVNRFSLVGGTFDARANGFWSCRKSGQNCPPGVRSISFNSAKDVIISGVKSMNSQVSHMT 172 (394)
T ss_pred EECccccccccccceeEEEECcCCCEEEccEEecCceeEEEcccCCCCCCCcccceeEEEeeeEEEECeEEEcCCCeEEE
Confidence 99988887776556689999999999999999999999998765444455678899999999999999999999999999
Q ss_pred EeceeeEEEEeEEEEcCCCCCCCCceeeeccccEEEEeeEEecCCceEEeCCCceeEEEEeeEEcCCceEEEeecCCCCC
Q 041993 173 FNGCNNVKLKGVKVLASGNSPNTDGIHVQLSSDVTILNTRISTGDDCVSIGPGTSNLWIENVACGPGHGISIGSLGKDLN 252 (391)
Q Consensus 173 ~~~~~nv~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~nv~i~n~~~~~~~gi~igs~g~~~~ 252 (391)
+..|+|++|++++|.++.+++|+||||+.+|+||+|+||+|.++||||+++++++||+|+||.|..+||++|||+|++..
T Consensus 173 ~~~~~nv~i~~v~I~~p~~~~NtDGidi~~s~nV~I~~~~I~~gDDcIaik~gs~nI~I~n~~c~~GhGisIGS~g~~~~ 252 (394)
T PLN02155 173 LNGCTNVVVRNVKLVAPGNSPNTDGFHVQFSTGVTFTGSTVQTGDDCVAIGPGTRNFLITKLACGPGHGVSIGSLAKELN 252 (394)
T ss_pred EECeeeEEEEEEEEECCCCCCCCCccccccceeEEEEeeEEecCCceEEcCCCCceEEEEEEEEECCceEEeccccccCC
Confidence 99999999999999999888999999999999999999999999999999999999999999999999999999987765
Q ss_pred CCcEEEEEEEeeEEeCCceEEEEEEecCCCCeeEEEEEEEEEEEecCCccEEEEeeeCCCCCCCCCCCcceEEEeEEEEe
Q 041993 253 EAGVQNVTVKTVTFTGTQNGLRIKSWGRPSNGFARNILFRNAIMKNVQNPIIIDQNYCPDNIGCPGQVSGVKISDVTYQD 332 (391)
Q Consensus 253 ~~~i~nI~i~n~~~~~~~~gi~i~~~~~~~~g~i~nI~~~ni~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~i~nI~~~n 332 (391)
.++++||+|+||++.++.+|++||+|.+.++|.++||+|+|++|+++.+||.|++.|.+....++.+.+.+.|+||+|+|
T Consensus 253 ~~~V~nV~v~n~~~~~t~~GirIKT~~~~~gG~v~nI~f~ni~m~~v~~pI~i~q~Y~~~~~~~~~~~s~v~i~~It~~n 332 (394)
T PLN02155 253 EDGVENVTVSSSVFTGSQNGVRIKSWARPSTGFVRNVFFQDLVMKNVENPIIIDQNYCPTHEGCPNEYSGVKISQVTYKN 332 (394)
T ss_pred CCcEEEEEEEeeEEeCCCcEEEEEEecCCCCEEEEEEEEEeEEEcCccccEEEEecccCCCCCCcCCCCCeEEEEEEEEe
Confidence 67899999999999999999999998654689999999999999999999999999976444455445667999999999
Q ss_pred EEEeeCCcceEEEecCCCCceecEEEEeeEEEecC-CCccceeecccccCcceecCCCCC
Q 041993 333 VHGTSATEVAVNFDCSSKYPCSRIRLEDVKLTYKN-QPAAASCSHADGSASGLVQPKGCL 391 (391)
Q Consensus 333 i~~~~~~~~~~~i~~~~~~~~~~v~~~nv~v~~~~-~~~~~~c~~~~g~~~~~~~~~~~~ 391 (391)
|+++.....++.+.|.++.||+||+|+||.+..++ .++...|.|++|...+.++|++|+
T Consensus 333 i~gt~~~~~a~~l~c~~~~pc~~I~l~nv~i~~~~~~~~~~~C~n~~G~~~~~~~p~~c~ 392 (394)
T PLN02155 333 IQGTSATQEAMKLVCSKSSPCTGITLQDIKLTYNKGTPATSFCFNAVGKSLGVIQPTSCL 392 (394)
T ss_pred eEEEecCCceEEEEeCCCCCEEEEEEEeeEEEecCCCccCcEEeccEeEEcccCCccccc
Confidence 99998866799999999999999999999999886 445899999999999998999995
No 2
>PLN02793 Probable polygalacturonase
Probab=100.00 E-value=1e-74 Score=569.96 Aligned_cols=366 Identities=42% Similarity=0.776 Sum_probs=334.9
Q ss_pred CCeEEeecCCccCCCCcccHHHHHHHHHHHcCCCCCcEEEEcCC-eEEEeeeeeeCCccCccEEEEEccEEEeccCcccc
Q 041993 24 PPSYNVVSFGAKPDGRTDSTKAFLSAWANACGSPRAATIYVPPG-RFFLRNVAFQGPCKNNRITIRIDGTLVAPSDYRVI 102 (391)
Q Consensus 24 ~~~~~v~d~Ga~~dg~~d~t~aiq~Ai~~a~~~~~g~~v~ip~G-~Y~~~~~~l~~~~~s~~~~l~~~G~l~~~~~~~~~ 102 (391)
++++||+||||++||.+|||+|||+||++||++.+|++|+||+| +|+++++.|.++||| +++|+++|+|.++.++..|
T Consensus 50 ~~~~~V~dfGA~gDG~tddT~Aiq~Ai~~aC~~~ggg~v~vP~G~~fl~~~i~l~gpcks-~vtL~l~g~l~~~~d~~~w 128 (443)
T PLN02793 50 ERVLHVGDFGAKGDGVTDDTQAFKEAWKMACSSKVKTRIVIPAGYTFLVRPIDLGGPCKA-KLTLQISGTIIAPKDPDVW 128 (443)
T ss_pred ceEEEhhhcccCCCCCCccHHHHHHHHHHHhccCCCCEEEECCCceEEEEEEEECCccCC-CeEEEEEEEEEccCChHHc
Confidence 35899999999999999999999999987899888999999999 599999999988899 9999999999999999888
Q ss_pred CCC--CceEEEEeeeeeEEec-eeEeCCCcccccccc--C-CCCCCCCCeeEEEEeecceEEEeEEEecCCceeEEEece
Q 041993 103 GNA--GNWLFFQHVDGVTLNS-GILDGQGTALWACKN--S-GKNCPSGATSMGFSNCNNIAINGLTSLNSQMYHVVFNGC 176 (391)
Q Consensus 103 ~~~--~~~i~~~~~~ni~I~G-G~idg~g~~~w~~~~--~-~~~~~~~~~~i~~~~~~nv~i~~v~i~n~~~~~i~~~~~ 176 (391)
+.. +.|+.+.+.+|++|.| |+|||+|+.||+... + ......||++|.+.+|+|++|++++++|+|.|++++..|
T Consensus 129 ~~~~~~~~i~~~~~~ni~ItG~G~IDG~G~~ww~~~~~~~~~~~~~~rP~~i~f~~~~nv~v~gitl~nSp~~~i~~~~~ 208 (443)
T PLN02793 129 KGLNPRKWLYFHGVNHLTVEGGGTVNGMGHEWWAQSCKINHTNPCRHAPTAITFHKCKDLRVENLNVIDSQQMHIAFTNC 208 (443)
T ss_pred cCCCCceEEEEecCceEEEEeceEEECCCcccccccccccCCCCccCCceEEEEEeeccEEEECeEEEcCCCeEEEEEcc
Confidence 753 5799999999999999 999999999996421 1 112345899999999999999999999999999999999
Q ss_pred eeEEEEeEEEEcCCCCCCCCceeeeccccEEEEeeEEecCCceEEeCCCceeEEEEeeEEcCCceEEEeecCCCCCCCcE
Q 041993 177 NNVKLKGVKVLASGNSPNTDGIHVQLSSDVTILNTRISTGDDCVSIGPGTSNLWIENVACGPGHGISIGSLGKDLNEAGV 256 (391)
Q Consensus 177 ~nv~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~nv~i~n~~~~~~~gi~igs~g~~~~~~~i 256 (391)
+|++|++++|.++.+++|+||||+.+|+||+|+||+|+++||||+++++++||+|+||.|..+||++|||+|.+...+.+
T Consensus 209 ~nv~i~~l~I~~p~~spNTDGIdi~~s~nV~I~n~~I~~gDDcIaik~~s~nI~I~n~~c~~GhGisIGSlg~~~~~~~V 288 (443)
T PLN02793 209 RRVTISGLKVIAPATSPNTDGIHISASRGVVIKDSIVRTGDDCISIVGNSSRIKIRNIACGPGHGISIGSLGKSNSWSEV 288 (443)
T ss_pred CcEEEEEEEEECCCCCCCCCcEeeeccceEEEEeCEEeCCCCeEEecCCcCCEEEEEeEEeCCccEEEecccCcCCCCcE
Confidence 99999999999998889999999999999999999999999999999999999999999999999999999987666789
Q ss_pred EEEEEEeeEEeCCceEEEEEEecCCCCeeEEEEEEEEEEEecCCccEEEEeeeCCCCCCCCCCCcceEEEeEEEEeEEEe
Q 041993 257 QNVTVKTVTFTGTQNGLRIKSWGRPSNGFARNILFRNAIMKNVQNPIIIDQNYCPDNIGCPGQVSGVKISDVTYQDVHGT 336 (391)
Q Consensus 257 ~nI~i~n~~~~~~~~gi~i~~~~~~~~g~i~nI~~~ni~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~i~nI~~~ni~~~ 336 (391)
+||+|+||++.++.+|++||++.+ ++|.++||+|+|++|+++.+||.|++.|.+....++.....+.|+||+|+||+++
T Consensus 289 ~nV~v~n~~~~~t~~GirIKt~~g-~~G~v~nItf~ni~m~nv~~pI~I~q~Y~~~~~~~~~~ts~v~I~nI~~~nI~Gt 367 (443)
T PLN02793 289 RDITVDGAFLSNTDNGVRIKTWQG-GSGNASKITFQNIFMENVSNPIIIDQYYCDSRKPCANQTSAVKVENISFVHIKGT 367 (443)
T ss_pred EEEEEEccEEeCCCceEEEEEeCC-CCEEEEEEEEEeEEEecCCceEEEEeeecCCCCCCCCCCCCeEEEeEEEEEEEEE
Confidence 999999999999999999999987 7899999999999999999999999999764444554556788999999999999
Q ss_pred eCCcceEEEecCCCCceecEEEEeeEEEecC-CCccceeecccccCcceecCCCCC
Q 041993 337 SATEVAVNFDCSSKYPCSRIRLEDVKLTYKN-QPAAASCSHADGSASGLVQPKGCL 391 (391)
Q Consensus 337 ~~~~~~~~i~~~~~~~~~~v~~~nv~v~~~~-~~~~~~c~~~~g~~~~~~~~~~~~ 391 (391)
.....++.+.|+++.||+||+|+||++...+ +.....|.|++|...+.+.|++|+
T Consensus 368 ~~~~~ai~l~cs~~~pc~ni~l~nI~l~~~~g~~~~~~C~n~~g~~~~~~~p~~C~ 423 (443)
T PLN02793 368 SATEEAIKFACSDSSPCEGLYLEDVQLLSSTGDFTESFCWEAYGSSSGQVYPPPCF 423 (443)
T ss_pred EcccccEEEEeCCCCCEeeEEEEeeEEEecCCCCCCcEEEccEEeECCeEcCCccc
Confidence 8766689999999999999999999999875 555789999999999999999995
No 3
>PLN02218 polygalacturonase ADPG
Probab=100.00 E-value=1e-73 Score=560.37 Aligned_cols=365 Identities=41% Similarity=0.790 Sum_probs=333.3
Q ss_pred ccCCCCCeEEeecCCccCCCCcccHHHHHHHHHHHcCCCCCcEEEEcCC-eEEEeeeeeeCCccCccEEEEEccEEEecc
Q 041993 19 SSLAAPPSYNVVSFGAKPDGRTDSTKAFLSAWANACGSPRAATIYVPPG-RFFLRNVAFQGPCKNNRITIRIDGTLVAPS 97 (391)
Q Consensus 19 ~~~~~~~~~~v~d~Ga~~dg~~d~t~aiq~Ai~~a~~~~~g~~v~ip~G-~Y~~~~~~l~~~~~s~~~~l~~~G~l~~~~ 97 (391)
.+.++++++||+||||++||.+|||+|||+||++||++.++++|+||+| +|+++++.|+|+||+ +++|+++|+|++++
T Consensus 60 ~~~~~~~~~nv~dfGA~gDG~tddT~Af~~Ai~~aCs~~Ggg~v~vP~G~tyl~~~i~l~gp~ks-~~~l~l~g~L~~s~ 138 (431)
T PLN02218 60 ASLRTPTTVSVSDFGAKGDGKTDDTQAFVNAWKKACSSNGAVNLLVPKGNTYLLKSIQLTGPCKS-IRTVQIFGTLSASQ 138 (431)
T ss_pred cccCCCcEEEeeecccCCCCCcccHHHHHHHHHHhhhcCCCcEEEECCCCeEEEeeeEecCccCC-ceEEEEEEEEEeCC
Confidence 5566789999999999999999999999999987899888899999999 699999999999999 99999999999999
Q ss_pred CccccCCCCceEEEEeeeeeEEec---eeEeCCCccccccccC---CCCCCCCCeeEEEEeecceEEEeEEEecCCceeE
Q 041993 98 DYRVIGNAGNWLFFQHVDGVTLNS---GILDGQGTALWACKNS---GKNCPSGATSMGFSNCNNIAINGLTSLNSQMYHV 171 (391)
Q Consensus 98 ~~~~~~~~~~~i~~~~~~ni~I~G---G~idg~g~~~w~~~~~---~~~~~~~~~~i~~~~~~nv~i~~v~i~n~~~~~i 171 (391)
++..|+....|+.+.+++|++|.| |+|||+|+.||..... ......||+++.|.+|+|++|+|++++|+|.|++
T Consensus 139 d~~~y~~~~~wi~~~~~~ni~I~G~~~GtIDG~G~~WW~~~~~~~~~~~~~~rP~~i~f~~~~nv~I~gitl~nSp~w~i 218 (431)
T PLN02218 139 KRSDYKDISKWIMFDGVNNLSVDGGSTGVVDGNGETWWQNSCKRNKAKPCTKAPTALTFYNSKSLIVKNLRVRNAQQIQI 218 (431)
T ss_pred ChhhccccccCEEEecCcEEEEECCCCcEEeCCchhhhhcccccCCcCccCcCCEEEEEEccccEEEeCeEEEcCCCEEE
Confidence 999997667899999999999999 9999999999975321 1223568999999999999999999999999999
Q ss_pred EEeceeeEEEEeEEEEcCCCCCCCCceeeeccccEEEEeeEEecCCceEEeCCCceeEEEEeeEEcCCceEEEeecCCCC
Q 041993 172 VFNGCNNVKLKGVKVLASGNSPNTDGIHVQLSSDVTILNTRISTGDDCVSIGPGTSNLWIENVACGPGHGISIGSLGKDL 251 (391)
Q Consensus 172 ~~~~~~nv~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~nv~i~n~~~~~~~gi~igs~g~~~ 251 (391)
++..|+|++|+|++|.++.+++|+||||+.+|+||+|+||+|.++||||+++++++||+|+||+|..+||++|||++.+.
T Consensus 219 ~~~~~~nV~i~~v~I~a~~~spNTDGIdi~ss~nV~I~n~~I~tGDDcIaIksgs~nI~I~n~~c~~GHGisIGS~g~~~ 298 (431)
T PLN02218 219 SIEKCSNVQVSNVVVTAPADSPNTDGIHITNTQNIRVSNSIIGTGDDCISIESGSQNVQINDITCGPGHGISIGSLGDDN 298 (431)
T ss_pred EEEceeeEEEEEEEEeCCCCCCCCCcEeecccceEEEEccEEecCCceEEecCCCceEEEEeEEEECCCCEEECcCCCCC
Confidence 99999999999999999888899999999999999999999999999999999999999999999999999999998776
Q ss_pred CCCcEEEEEEEeeEEeCCceEEEEEEecCCCCeeEEEEEEEEEEEecCCccEEEEeeeCCCCCCCCCCCcceEEEeEEEE
Q 041993 252 NEAGVQNVTVKTVTFTGTQNGLRIKSWGRPSNGFARNILFRNAIMKNVQNPIIIDQNYCPDNIGCPGQVSGVKISDVTYQ 331 (391)
Q Consensus 252 ~~~~i~nI~i~n~~~~~~~~gi~i~~~~~~~~g~i~nI~~~ni~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~i~nI~~~ 331 (391)
..+.++||+|+||++.++.+|++||++.+ ++|.++||+|+|++|+++.+||.|++.|.+.. .++.++..+.|+||+|+
T Consensus 299 ~~~~V~nV~v~n~~~~~t~nGvRIKT~~G-g~G~v~nI~f~ni~m~~V~~pI~Idq~Y~~~~-~~~~~~s~v~I~nI~~~ 376 (431)
T PLN02218 299 SKAFVSGVTVDGAKLSGTDNGVRIKTYQG-GSGTASNIIFQNIQMENVKNPIIIDQDYCDKS-KCTSQQSAVQVKNVVYR 376 (431)
T ss_pred CCceEEEEEEEccEEecCCcceEEeecCC-CCeEEEEEEEEeEEEEcccccEEEEeeccCCC-CCCCCCCCeEEEEEEEE
Confidence 56789999999999999999999999987 88999999999999999999999999998643 24445567789999999
Q ss_pred eEEEeeCCcceEEEecCCCCceecEEEEeeEEEecCCCccceeecccccCcceecCCCCC
Q 041993 332 DVHGTSATEVAVNFDCSSKYPCSRIRLEDVKLTYKNQPAAASCSHADGSASGLVQPKGCL 391 (391)
Q Consensus 332 ni~~~~~~~~~~~i~~~~~~~~~~v~~~nv~v~~~~~~~~~~c~~~~g~~~~~~~~~~~~ 391 (391)
||+++.....++.+.|+++.||+||+|+||++... ...|.|+.|...+.+.| .|.
T Consensus 377 NI~gtsa~~~ai~l~cs~~~pc~nI~l~nV~i~~~----~~~c~n~~~~~~~~~~p-~c~ 431 (431)
T PLN02218 377 NISGTSASDVAITFNCSKNYPCQGIVLDNVNIKGG----KATCTNANVVDKGAVSP-QCN 431 (431)
T ss_pred eEEEEecCCcEEEEEECCCCCEeeEEEEeEEEECC----eeeEEEeeEEEcccCCC-CCC
Confidence 99999876678999999999999999999999842 45799999999888776 774
No 4
>PLN03010 polygalacturonase
Probab=100.00 E-value=1e-72 Score=548.41 Aligned_cols=358 Identities=40% Similarity=0.791 Sum_probs=328.7
Q ss_pred cCCCCCeEEeecCCccCCCCcccHHHHHHHHHHHcCCCC-CcEEEEcCC-eEEEeeeeeeCCccCccEEEEEccEEEecc
Q 041993 20 SLAAPPSYNVVSFGAKPDGRTDSTKAFLSAWANACGSPR-AATIYVPPG-RFFLRNVAFQGPCKNNRITIRIDGTLVAPS 97 (391)
Q Consensus 20 ~~~~~~~~~v~d~Ga~~dg~~d~t~aiq~Ai~~a~~~~~-g~~v~ip~G-~Y~~~~~~l~~~~~s~~~~l~~~G~l~~~~ 97 (391)
+...++++||+||||++||.+|||+|||+|++++|+..+ +++|+||+| +|+++++.|+++||+.+++|+++|+|.++.
T Consensus 40 ~~~~~~~~nV~dyGA~gDG~tddt~A~~~Ai~~ac~~~g~~g~v~vP~G~~yl~~~i~l~~pc~~~~v~l~l~G~l~~~~ 119 (409)
T PLN03010 40 GLVNGQNYNVLKFGAKGDGQTDDSNAFLQAWNATCGGEGNINTLLIPSGKTYLLQPIEFKGPCKSTSIKVQLDGIIVAPS 119 (409)
T ss_pred ccCCCcEEeeeecCcCCCCCcccHHHHHHHHHHHccCCCCceEEEECCCCeEEEEeEEecCCCCCCcEEEEEccEEEccC
Confidence 344678999999999999999999999999987776432 379999999 799999999998874389999999999999
Q ss_pred CccccCC--CCceEEEEeeeeeEEec-eeEeCCCccccccccCCCCCCCCCeeEEEEeecceEEEeEEEecCCceeEEEe
Q 041993 98 DYRVIGN--AGNWLFFQHVDGVTLNS-GILDGQGTALWACKNSGKNCPSGATSMGFSNCNNIAINGLTSLNSQMYHVVFN 174 (391)
Q Consensus 98 ~~~~~~~--~~~~i~~~~~~ni~I~G-G~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~n~~~~~i~~~ 174 (391)
+...|+. ...|+.+.+++|+.|.| |+|||+|+.||. .+.+.+|+|++|++++++|+|.|++++.
T Consensus 120 d~~~w~~~~~~~wi~f~~v~nv~I~G~G~IDG~G~~ww~-------------~l~~~~~~nv~v~gitl~nsp~~~i~i~ 186 (409)
T PLN03010 120 NIVAWSNPKSQMWISFSTVSGLMIDGSGTIDGRGSSFWE-------------ALHISKCDNLTINGITSIDSPKNHISIK 186 (409)
T ss_pred ChhhccCCCCcceEEEecccccEEeeceEEeCCCccccc-------------eEEEEeecCeEEeeeEEEcCCceEEEEe
Confidence 9999964 25689999999999999 999999999995 4899999999999999999999999999
Q ss_pred ceeeEEEEeEEEEcCCCCCCCCceeeeccccEEEEeeEEecCCceEEeCCCceeEEEEeeEEcCCceEEEeecCCCCCCC
Q 041993 175 GCNNVKLKGVKVLASGNSPNTDGIHVQLSSDVTILNTRISTGDDCVSIGPGTSNLWIENVACGPGHGISIGSLGKDLNEA 254 (391)
Q Consensus 175 ~~~nv~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~nv~i~n~~~~~~~gi~igs~g~~~~~~ 254 (391)
.|++++|++++|.++..++|+||||+.+|+||+|+||+|+++||||++|+++.|+.|+++.|..+||++|||+|......
T Consensus 187 ~~~nv~i~~i~I~a~~~s~NTDGiDi~~s~nV~I~n~~I~~gDDcIaiksgs~ni~I~~~~C~~gHGisIGS~g~~~~~~ 266 (409)
T PLN03010 187 TCNYVAISKINILAPETSPNTDGIDISYSTNINIFDSTIQTGDDCIAINSGSSNINITQINCGPGHGISVGSLGADGANA 266 (409)
T ss_pred ccccEEEEEEEEeCCCCCCCCCceeeeccceEEEEeeEEecCCCeEEecCCCCcEEEEEEEeECcCCEEEccCCCCCCCC
Confidence 99999999999999888899999999999999999999999999999999999999999999999999999998876566
Q ss_pred cEEEEEEEeeEEeCCceEEEEEEecCCCCeeEEEEEEEEEEEecCCccEEEEeeeCCCCCCCCCCCcceEEEeEEEEeEE
Q 041993 255 GVQNVTVKTVTFTGTQNGLRIKSWGRPSNGFARNILFRNAIMKNVQNPIIIDQNYCPDNIGCPGQVSGVKISDVTYQDVH 334 (391)
Q Consensus 255 ~i~nI~i~n~~~~~~~~gi~i~~~~~~~~g~i~nI~~~ni~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~i~nI~~~ni~ 334 (391)
.++||+|+||+|.++.+|++||++.+ ++|.++||+|+|++|+++++||.|++.|.+....+..+.+...|+||+|+||+
T Consensus 267 ~V~nV~v~n~~i~~t~~GirIKt~~G-~~G~v~nItf~nI~m~~v~~pI~I~q~Y~~~~~~~~~~~s~v~Isdi~~~ni~ 345 (409)
T PLN03010 267 KVSDVHVTHCTFNQTTNGARIKTWQG-GQGYARNISFENITLINTKNPIIIDQQYIDKGKLDATKDSAVAISNVKYVGFR 345 (409)
T ss_pred eeEEEEEEeeEEeCCCcceEEEEecC-CCEEEEEeEEEeEEEecCCccEEEEeeccCCCCCCCCCCCceEEEeEEEEeeE
Confidence 79999999999999999999999987 78999999999999999999999999998754445556678899999999999
Q ss_pred EeeCCcceEEEecCCCCceecEEEEeeEEEecC-CCccceeecccccCcceecCCCCC
Q 041993 335 GTSATEVAVNFDCSSKYPCSRIRLEDVKLTYKN-QPAAASCSHADGSASGLVQPKGCL 391 (391)
Q Consensus 335 ~~~~~~~~~~i~~~~~~~~~~v~~~nv~v~~~~-~~~~~~c~~~~g~~~~~~~~~~~~ 391 (391)
++...+.++.+.|++..||+||+|+||+++.++ .++...|.|+.|...+.++|++|+
T Consensus 346 GT~~~~~~i~l~Cs~~~pC~ni~~~~v~l~~~~g~~~~~~C~nv~g~~~~~~~~~~C~ 403 (409)
T PLN03010 346 GTTSNENAITLKCSAITHCKDVVMDDIDVTMENGEKPKVECQNVEGESSDTDLMRDCF 403 (409)
T ss_pred EEeCCCccEEEEeCCCCCEeceEEEEEEEEecCCCccceEeeCccccccCCCCCCccc
Confidence 998877899999999999999999999999875 567899999999999999999996
No 5
>PLN03003 Probable polygalacturonase At3g15720
Probab=100.00 E-value=2e-72 Score=549.23 Aligned_cols=364 Identities=41% Similarity=0.752 Sum_probs=329.3
Q ss_pred cCCCCCeEEeecCCccCCCCcccHHHHHHHHHHHcCCCCCcEEEEcCC-eEEEeeeeeeCCccCccEEEEEccEEEeccC
Q 041993 20 SLAAPPSYNVVSFGAKPDGRTDSTKAFLSAWANACGSPRAATIYVPPG-RFFLRNVAFQGPCKNNRITIRIDGTLVAPSD 98 (391)
Q Consensus 20 ~~~~~~~~~v~d~Ga~~dg~~d~t~aiq~Ai~~a~~~~~g~~v~ip~G-~Y~~~~~~l~~~~~s~~~~l~~~G~l~~~~~ 98 (391)
-.++++++||++|||++||.+|||+|||+|+++||++.++++|+||+| +|+++++.|+++||+..++++++|+|.++..
T Consensus 17 ~~~~~~~fnV~~yGA~gDG~tDdT~Af~~Aw~aaC~~~ggg~v~VP~G~~yl~~pl~l~gpck~~~~~~~i~G~i~ap~~ 96 (456)
T PLN03003 17 IFTSSNALDVTQFGAVGDGVTDDSQAFLKAWEAVCSGTGDGQFVVPAGMTFMLQPLKFQGSCKSTPVFVQMLGKLVAPSK 96 (456)
T ss_pred eeeeeeEEehhhcCCCCCCCcccHHHHHHHHHHhhhccCCCEEEECCCceEEeeeeEeCCCccCcceeeccCceEecCcc
Confidence 367888999999999999999999999999998898888999999999 5899999999988873488889999988654
Q ss_pred ccccCC-CCceEEEEeeeeeEEec-eeEeCCCccccccccCCCCCCCCCeeEEEEeecceEEEeEEEecCCceeEEEece
Q 041993 99 YRVIGN-AGNWLFFQHVDGVTLNS-GILDGQGTALWACKNSGKNCPSGATSMGFSNCNNIAINGLTSLNSQMYHVVFNGC 176 (391)
Q Consensus 99 ~~~~~~-~~~~i~~~~~~ni~I~G-G~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~n~~~~~i~~~~~ 176 (391)
..|.. ...||.+.+++|++|.| |+|||+|+.||+.. ..||+++.|.+|+|++|+|++++|+|.|++++..|
T Consensus 97 -~~w~~~~~~wI~f~~~~~i~I~G~GtIDGqG~~wW~~~------~~rP~~l~f~~~~nv~I~gitl~NSp~w~i~i~~c 169 (456)
T PLN03003 97 -GNWKGDKDQWILFTDIEGLVIEGDGEINGQGSSWWEHK------GSRPTALKFRSCNNLRLSGLTHLDSPMAHIHISEC 169 (456)
T ss_pred -ccccCCCcceEEEEcccceEEeccceEeCCchhhhhcc------cCCceEEEEEecCCcEEeCeEEecCCcEEEEEecc
Confidence 34543 25699999999999999 99999999999742 35899999999999999999999999999999999
Q ss_pred eeEEEEeEEEEcCCCCCCCCceeeeccccEEEEeeEEecCCceEEeCCCceeEEEEeeEEcCCceEEEeecCCCCCCCcE
Q 041993 177 NNVKLKGVKVLASGNSPNTDGIHVQLSSDVTILNTRISTGDDCVSIGPGTSNLWIENVACGPGHGISIGSLGKDLNEAGV 256 (391)
Q Consensus 177 ~nv~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~nv~i~n~~~~~~~gi~igs~g~~~~~~~i 256 (391)
++++|++++|.++.+++|+||||+.+|+||+|+||+|.++||||+++++++||+|+||+|..+||++|||+|.+...+.+
T Consensus 170 ~nV~i~~l~I~ap~~spNTDGIDi~~S~nV~I~n~~I~tGDDCIaiksgs~NI~I~n~~c~~GHGISIGSlg~~g~~~~V 249 (456)
T PLN03003 170 NYVTISSLRINAPESSPNTDGIDVGASSNVVIQDCIIATGDDCIAINSGTSNIHISGIDCGPGHGISIGSLGKDGETATV 249 (456)
T ss_pred ccEEEEEEEEeCCCCCCCCCcEeecCcceEEEEecEEecCCCeEEeCCCCccEEEEeeEEECCCCeEEeeccCCCCcceE
Confidence 99999999999998889999999999999999999999999999999999999999999999999999999887656789
Q ss_pred EEEEEEeeEEeCCceEEEEEEecCCCCeeEEEEEEEEEEEecCCccEEEEeeeCCCCCC--CCCCCcceEEEeEEEEeEE
Q 041993 257 QNVTVKTVTFTGTQNGLRIKSWGRPSNGFARNILFRNAIMKNVQNPIIIDQNYCPDNIG--CPGQVSGVKISDVTYQDVH 334 (391)
Q Consensus 257 ~nI~i~n~~~~~~~~gi~i~~~~~~~~g~i~nI~~~ni~~~~~~~~i~i~~~~~~~~~~--~~~~~~~~~i~nI~~~ni~ 334 (391)
+||+|+||++.++.+|++||++.+ ++|.++||+|+|++|+++.+||.|++.|.+.... +....+.+.|+||+|+||+
T Consensus 250 ~NV~v~n~~~~~T~nGvRIKT~~G-g~G~v~nItf~nI~m~nV~~pI~Idq~Y~~~~~~~~~~~~~s~v~IsnI~f~NI~ 328 (456)
T PLN03003 250 ENVCVQNCNFRGTMNGARIKTWQG-GSGYARMITFNGITLDNVENPIIIDQFYNGGDSDNAKDRKSSAVEVSKVVFSNFI 328 (456)
T ss_pred EEEEEEeeEEECCCcEEEEEEeCC-CCeEEEEEEEEeEEecCccceEEEEcccCCCCCCCcccCCCCCcEEEeEEEEeEE
Confidence 999999999999999999999987 7899999999999999999999999999753221 2233456899999999999
Q ss_pred EeeCCcceEEEecCCCCceecEEEEeeEEEecC----CCccceeecccccCcceecCCCCC
Q 041993 335 GTSATEVAVNFDCSSKYPCSRIRLEDVKLTYKN----QPAAASCSHADGSASGLVQPKGCL 391 (391)
Q Consensus 335 ~~~~~~~~~~i~~~~~~~~~~v~~~nv~v~~~~----~~~~~~c~~~~g~~~~~~~~~~~~ 391 (391)
++.....++.+.|++..||+||+|+||.++.+. ..+.+.|.|+.|...+.++|++|+
T Consensus 329 GTs~~~~ai~l~Cs~~~PC~nI~l~ni~l~~~~~g~~~~~~~~C~Nv~G~~~~~~~~~~C~ 389 (456)
T PLN03003 329 GTSKSEYGVDFRCSERVPCTEIFLRDMKIETASSGSGQVAQGQCLNVRGASTIAVPGLECL 389 (456)
T ss_pred EEeCccceEEEEeCCCCCeeeEEEEEEEEEecCCCCCCccCcEEeccccccCceECCCCcc
Confidence 988877899999999999999999999999762 346799999999999999998995
No 6
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=100.00 E-value=3.1e-72 Score=546.43 Aligned_cols=367 Identities=43% Similarity=0.796 Sum_probs=328.4
Q ss_pred CCCCeEEeecCCccCCCCcccHHHHHHHHHHHcCCCCCcEEEEcCCeEEEeeeeeeCCccCccEEEEEccEEEeccCccc
Q 041993 22 AAPPSYNVVSFGAKPDGRTDSTKAFLSAWANACGSPRAATIYVPPGRFFLRNVAFQGPCKNNRITIRIDGTLVAPSDYRV 101 (391)
Q Consensus 22 ~~~~~~~v~d~Ga~~dg~~d~t~aiq~Ai~~a~~~~~g~~v~ip~G~Y~~~~~~l~~~~~s~~~~l~~~G~l~~~~~~~~ 101 (391)
++++++||+||||++||.+|||+|||+||+++|++.++++|+||+|+|+++++.|+++||+ ...|.+ +|.++++.+.
T Consensus 32 ~~~~~~nv~d~GA~gDg~tddT~Ai~~Ai~~aC~~~Ggg~V~vP~G~yl~g~i~lkgpc~~-~s~v~l--~L~~s~d~~~ 108 (404)
T PLN02188 32 SSTFLFDVRSFGARANGHTDDSKAFMAAWKAACASTGAVTLLIPPGTYYIGPVQFHGPCTN-VSSLTF--TLKAATDLSR 108 (404)
T ss_pred CCceEEehhhcCcCCCCCeeCHHHHHHHHHHHhccCCCeEEEECCCeEEEEeEEeCCCcCc-ceeEEE--EEEcCCCHHH
Confidence 4667999999999999999999999999987899888899999999999999999998875 434444 9999999999
Q ss_pred cCCCCceEEEEeeeeeEEec-eeEeCCCcccccccc--CCCCCCCCCeeEEEEeecceEEEeEEEecCCceeEEEeceee
Q 041993 102 IGNAGNWLFFQHVDGVTLNS-GILDGQGTALWACKN--SGKNCPSGATSMGFSNCNNIAINGLTSLNSQMYHVVFNGCNN 178 (391)
Q Consensus 102 ~~~~~~~i~~~~~~ni~I~G-G~idg~g~~~w~~~~--~~~~~~~~~~~i~~~~~~nv~i~~v~i~n~~~~~i~~~~~~n 178 (391)
|+....|+.+..++|++|.| |+|||+|+.||+... .......||++|.|.+|+|++|++++++|+|.|++++..|+|
T Consensus 109 y~~~~~~i~~~~~~ni~I~G~G~IDG~G~~ww~~~~~~~~~~~~~rP~~i~f~~~~nv~i~gitl~nSp~w~i~~~~~~~ 188 (404)
T PLN02188 109 YGSGNDWIEFGWVNGLTLTGGGTFDGQGAAAWPFNKCPIRKDCKLLPTSVKFVNMNNTVVRGITSVNSKFFHIALVECRN 188 (404)
T ss_pred CCCccceEEEeceeeEEEEeeEEEeCCCcccccccccccCCCCCcCceEEEEEeeeeEEEeCeEEEcCCCeEEEEEcccc
Confidence 98766789998899999999 999999999997432 112345689999999999999999999999999999999999
Q ss_pred EEEEeEEEEcCCCCCCCCceeeeccccEEEEeeEEecCCceEEeCCCceeEEEEeeEEcCCceEEEeecCCCCCCCcEEE
Q 041993 179 VKLKGVKVLASGNSPNTDGIHVQLSSDVTILNTRISTGDDCVSIGPGTSNLWIENVACGPGHGISIGSLGKDLNEAGVQN 258 (391)
Q Consensus 179 v~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~nv~i~n~~~~~~~gi~igs~g~~~~~~~i~n 258 (391)
++|++++|.++.+++|+||||+.+|+||+|+||+|.++||||+++++++||+|+|+.|..+||++|||.|++.+.+.++|
T Consensus 189 v~i~~v~I~~~~~spNtDGidi~~s~nV~I~n~~I~~GDDcIaiksg~~nI~I~n~~c~~ghGisiGSlG~~~~~~~V~n 268 (404)
T PLN02188 189 FKGSGLKISAPSDSPNTDGIHIERSSGVYISDSRIGTGDDCISIGQGNSQVTITRIRCGPGHGISVGSLGRYPNEGDVTG 268 (404)
T ss_pred EEEEEEEEeCCCCCCCCCcEeeeCcccEEEEeeEEeCCCcEEEEccCCccEEEEEEEEcCCCcEEeCCCCCCCcCCcEEE
Confidence 99999999998888999999999999999999999999999999999999999999999999999999988766778999
Q ss_pred EEEEeeEEeCCceEEEEEEecCC-CCeeEEEEEEEEEEEecCCccEEEEeeeCCCCCCCCCCCcceEEEeEEEEeEEEee
Q 041993 259 VTVKTVTFTGTQNGLRIKSWGRP-SNGFARNILFRNAIMKNVQNPIIIDQNYCPDNIGCPGQVSGVKISDVTYQDVHGTS 337 (391)
Q Consensus 259 I~i~n~~~~~~~~gi~i~~~~~~-~~g~i~nI~~~ni~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~i~nI~~~ni~~~~ 337 (391)
|+|+||++.++.+|++||++.+. ++|.++||+|+|++|+++.+||.|.+.|.+.....+..+..+.|+||+|+||+++.
T Consensus 269 V~v~n~~~~~t~~GiriKt~~g~~~~G~v~nI~f~ni~m~~v~~pI~i~~~Y~~~~~~~~~~~s~v~I~nIt~~nI~gt~ 348 (404)
T PLN02188 269 LVVRDCTFTGTTNGIRIKTWANSPGKSAATNMTFENIVMNNVTNPIIIDQKYCPFYSCESKYPSGVTLSDIYFKNIRGTS 348 (404)
T ss_pred EEEEeeEEECCCcEEEEEEecCCCCceEEEEEEEEeEEecCccceEEEEccccCCCCCCcCCCCCcEEEeEEEEEEEEEe
Confidence 99999999999999999998752 46899999999999999999999999987532211222356789999999999998
Q ss_pred CCcceEEEecCCCCceecEEEEeeEEEecC--CCccceeecccccCcceecCCCCC
Q 041993 338 ATEVAVNFDCSSKYPCSRIRLEDVKLTYKN--QPAAASCSHADGSASGLVQPKGCL 391 (391)
Q Consensus 338 ~~~~~~~i~~~~~~~~~~v~~~nv~v~~~~--~~~~~~c~~~~g~~~~~~~~~~~~ 391 (391)
....++.+.|+++.||+||+|+||++..+. ..+.+.|.|++|.+.+.++|++|.
T Consensus 349 ~~~~a~~l~cs~~~pc~ni~~~nV~i~~~~g~~~~~~~C~nv~g~~~g~~~p~~C~ 404 (404)
T PLN02188 349 SSQVAVLLKCSRGVPCQGVYLQDVHLDLSSGEGGTSSSCENVRAKYIGTQIPPPCP 404 (404)
T ss_pred cCceEEEEEECCCCCEeeEEEEeeEEEecCCCCCcCceeEcceeEEcccCcCCCCC
Confidence 766789999999999999999999999774 345799999999999999999994
No 7
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=100.00 E-value=2e-56 Score=429.24 Aligned_cols=322 Identities=36% Similarity=0.669 Sum_probs=278.6
Q ss_pred cCCCCCcEEEEcCCeEEEeeeeeeCCccCccEEEEEccEEEeccCccccCCCCceEEEEeeeeeEEec-eeEeCCCcccc
Q 041993 54 CGSPRAATIYVPPGRFFLRNVAFQGPCKNNRITIRIDGTLVAPSDYRVIGNAGNWLFFQHVDGVTLNS-GILDGQGTALW 132 (391)
Q Consensus 54 ~~~~~g~~v~ip~G~Y~~~~~~l~~~~~s~~~~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~ni~I~G-G~idg~g~~~w 132 (391)
|++.++++|+||+|+|+++++.|++.+++ +++++++|++.++.....++. ..+|.+.+++|+.|.| |+|||+|+.||
T Consensus 1 C~~~~~~~v~vP~g~~~~~~~~l~~~l~~-~~~~~l~G~~~~~~~~~~~~~-~~~i~~~~~~ni~i~G~G~IDG~G~~w~ 78 (326)
T PF00295_consen 1 CSSIGGGTVVVPAGTYLLGPLFLKSTLHS-DVGLTLDGTINFSYDNWEGPN-SALIYAENAENITITGKGTIDGNGQAWW 78 (326)
T ss_dssp HSEEEEESEEESTSTEEEEETSEETECET-TCEEEEESEEEEG-EESTSE--SEEEEEESEEEEECTTSSEEE--GGGTC
T ss_pred CcCCcCCEEEECCCCeEEceeEEEcccCC-CeEEEEEEEEEeCCCcccCCc-cEEEEEEceEEEEecCCceEcCchhhhh
Confidence 56667789999999999999999865567 899999999998866655554 7899999999999999 99999999999
Q ss_pred ccccC-CCCCCCCCeeEEEEeecceEEEeEEEecCCceeEEEeceeeEEEEeEEEEcCCCCCCCCceeeeccccEEEEee
Q 041993 133 ACKNS-GKNCPSGATSMGFSNCNNIAINGLTSLNSQMYHVVFNGCNNVKLKGVKVLASGNSPNTDGIHVQLSSDVTILNT 211 (391)
Q Consensus 133 ~~~~~-~~~~~~~~~~i~~~~~~nv~i~~v~i~n~~~~~i~~~~~~nv~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~ 211 (391)
+.... ......||+++.+.+|+|++|++++++|+|.|++++..|+|++|++++|.++.+.+++|||++.+|+||+|+||
T Consensus 79 ~~~~~~~~~~~~rp~~i~~~~~~~~~i~~i~~~nsp~w~~~~~~~~nv~i~~i~I~~~~~~~NtDGid~~~s~nv~I~n~ 158 (326)
T PF00295_consen 79 DGSGDANNNGQRRPRLIRFNNCKNVTIEGITIRNSPFWHIHINDCDNVTISNITINNPANSPNTDGIDIDSSKNVTIENC 158 (326)
T ss_dssp SSCTTHCCSSSSSSESEEEEEEEEEEEESEEEES-SSESEEEESEEEEEEESEEEEEGGGCTS--SEEEESEEEEEEESE
T ss_pred ccccccccccccccceeeeeeecceEEEeeEecCCCeeEEEEEccCCeEEcceEEEecCCCCCcceEEEEeeeEEEEEEe
Confidence 85432 13446799999999999999999999999999999999999999999999987779999999999999999999
Q ss_pred EEecCCceEEeCCCceeEEEEeeEEcCCceEEEeecCCCCCCCcEEEEEEEeeEEeCCceEEEEEEecCCCCeeEEEEEE
Q 041993 212 RISTGDDCVSIGPGTSNLWIENVACGPGHGISIGSLGKDLNEAGVQNVTVKTVTFTGTQNGLRIKSWGRPSNGFARNILF 291 (391)
Q Consensus 212 ~i~~~dD~i~i~~~~~nv~i~n~~~~~~~gi~igs~g~~~~~~~i~nI~i~n~~~~~~~~gi~i~~~~~~~~g~i~nI~~ 291 (391)
+++++||||++|++..||+|+||+|..+||++|||++.......++||+|+||++.++.+|++||++++ ++|.++||+|
T Consensus 159 ~i~~gDD~Iaiks~~~ni~v~n~~~~~ghGisiGS~~~~~~~~~i~nV~~~n~~i~~t~~gi~iKt~~~-~~G~v~nI~f 237 (326)
T PF00295_consen 159 FIDNGDDCIAIKSGSGNILVENCTCSGGHGISIGSEGSGGSQNDIRNVTFENCTIINTDNGIRIKTWPG-GGGYVSNITF 237 (326)
T ss_dssp EEESSSESEEESSEECEEEEESEEEESSSEEEEEEESSSSE--EEEEEEEEEEEEESESEEEEEEEETT-TSEEEEEEEE
T ss_pred ecccccCcccccccccceEEEeEEEeccccceeeeccCCccccEEEeEEEEEEEeeccceEEEEEEecc-cceEEeceEE
Confidence 999999999999988899999999999999999999765433469999999999999999999999976 8899999999
Q ss_pred EEEEEecCCccEEEEeeeCCCCCCCCCCCcceEEEeEEEEeEEEeeCCcceEEEecCCCCceecEEEEeeEEEecCCCcc
Q 041993 292 RNAIMKNVQNPIIIDQNYCPDNIGCPGQVSGVKISDVTYQDVHGTSATEVAVNFDCSSKYPCSRIRLEDVKLTYKNQPAA 371 (391)
Q Consensus 292 ~ni~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~i~nI~~~ni~~~~~~~~~~~i~~~~~~~~~~v~~~nv~v~~~~~~~~ 371 (391)
+|++|+++.+||.+.+.|.. ...++.++..+.|+||+|+||+++.....++.+.|.+..||+||+|+||+++. +...
T Consensus 238 ~ni~~~~v~~pi~i~~~y~~-~~~~~~~~~~~~i~nI~~~nitg~~~~~~~i~i~~~~~~~~~ni~f~nv~i~~--g~~~ 314 (326)
T PF00295_consen 238 ENITMENVKYPIFIDQDYRD-GGPCGKPPSGVSISNITFRNITGTSAGSSAISIDCSPGSPCSNITFENVNITG--GKKP 314 (326)
T ss_dssp EEEEEEEESEEEEEEEEECT-TEESSCSSSSSEEEEEEEEEEEEEESTSEEEEEE-BTTSSEEEEEEEEEEEES--SBSE
T ss_pred EEEEecCCceEEEEEecccc-ccccCcccCCceEEEEEEEeeEEEeccceEEEEEECCcCcEEeEEEEeEEEEc--CCcC
Confidence 99999999999999999876 22233334567899999999999998767999999999999999999999997 3668
Q ss_pred ceeecccccC
Q 041993 372 ASCSHADGSA 381 (391)
Q Consensus 372 ~~c~~~~g~~ 381 (391)
..|.|++.++
T Consensus 315 ~~c~nv~~~~ 324 (326)
T PF00295_consen 315 AQCKNVPSGI 324 (326)
T ss_dssp SEEBSCCTT-
T ss_pred eEEECCCCCC
Confidence 9999998775
No 8
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=1.5e-40 Score=329.16 Aligned_cols=275 Identities=29% Similarity=0.481 Sum_probs=235.6
Q ss_pred cCCCCCeEEeecCCccCCCCcccHHHHHHHHHHHcCCCCCcEEEEcCCeEEEeeeeeeCCccCccEEEEEc-c-EEEecc
Q 041993 20 SLAAPPSYNVVSFGAKPDGRTDSTKAFLSAWANACGSPRAATIYVPPGRFFLRNVAFQGPCKNNRITIRID-G-TLVAPS 97 (391)
Q Consensus 20 ~~~~~~~~~v~d~Ga~~dg~~d~t~aiq~Ai~~a~~~~~g~~v~ip~G~Y~~~~~~l~~~~~s~~~~l~~~-G-~l~~~~ 97 (391)
+.+..+.++|.+|||++||.+|+++|||+||++ |++.+|++|+||||+|+.++|+|+ | +++|+++ | +|..+.
T Consensus 76 ~~~~~t~~sv~~~ga~gDG~t~~~~aiq~AI~~-ca~a~Gg~V~lPaGtylsg~l~LK----S-~~~L~l~egatl~~~~ 149 (542)
T COG5434 76 TAATDTAFSVSDDGAVGDGATDNTAAIQAAIDA-CASAGGGTVLLPAGTYLSGPLFLK----S-NVTLHLAEGATLLASS 149 (542)
T ss_pred cccccceeeeccccccccCCccCHHHHHHHHHh-hhhhcCceEEECCceeEeeeEEEe----c-ccEEEecCCceeeCCC
Confidence 346677899999999999999999999999965 787899999999999999999998 8 9999995 7 999999
Q ss_pred CccccCC--------C----------CceEEEEe-------------eeeeE-Eec-eeEeCCC----cccccccc--CC
Q 041993 98 DYRVIGN--------A----------GNWLFFQH-------------VDGVT-LNS-GILDGQG----TALWACKN--SG 138 (391)
Q Consensus 98 ~~~~~~~--------~----------~~~i~~~~-------------~~ni~-I~G-G~idg~g----~~~w~~~~--~~ 138 (391)
++.+|+. . ..++..++ .+|.. |.| ++++|++ ..||.... ..
T Consensus 150 ~p~~y~~~~~~~~~~~~~~~~a~~~~~~~~~~~g~~d~~~~~~~~~~~~n~~~i~g~~~i~g~~~~~g~~~~~~~g~~~~ 229 (542)
T COG5434 150 NPKDYPSFTSRFNGNSGPYVYATDSDNAMISGEGLADGKADLLIAGNSSNRKEIWGKGTIDGNGYKRGDKWFSGLGAVET 229 (542)
T ss_pred ChhhccccccccccccCcceeeecccCceeeeecccccCcccceeccCCceEEEeccceecCccccchhhhhhcccchhh
Confidence 9998883 1 12232222 35555 777 8898864 12675443 11
Q ss_pred CCCC--CCCeeEEEEeecceEEEeEEEecCCceeEEEeceeeEEEEeEEEEcCCCCCCCCceeeeccccEEEEeeEEecC
Q 041993 139 KNCP--SGATSMGFSNCNNIAINGLTSLNSQMYHVVFNGCNNVKLKGVKVLASGNSPNTDGIHVQLSSDVTILNTRISTG 216 (391)
Q Consensus 139 ~~~~--~~~~~i~~~~~~nv~i~~v~i~n~~~~~i~~~~~~nv~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~ 216 (391)
.... .||..+.+..|.|++++|++|.+++.|.+++..|+|++++|++|.+.... |+||+++.+|+||+|++|+|.++
T Consensus 230 ~i~~~~~rp~~~~l~~c~NV~~~g~~i~ns~~~~~h~~~~~nl~~~nl~I~~~~~~-NtDG~d~~sc~NvlI~~~~fdtg 308 (542)
T COG5434 230 RIGGKGVRPRTVVLKGCRNVLLEGLNIKNSPLWTVHPVDCDNLTFRNLTIDANRFD-NTDGFDPGSCSNVLIEGCRFDTG 308 (542)
T ss_pred cccccCcCCceEEEeccceEEEeeeEecCCCcEEEeeecccCceecceEEECCCCC-CCCccccccceeEEEeccEEecC
Confidence 1222 69999999999999999999999999999999999999999999997654 99999999999999999999999
Q ss_pred CceEEeCCC-----------ceeEEEEeeEEcCCce-EEEeecCCCCCCCcEEEEEEEeeEEeCCceEEEEEEecCCCCe
Q 041993 217 DDCVSIGPG-----------TSNLWIENVACGPGHG-ISIGSLGKDLNEAGVQNVTVKTVTFTGTQNGLRIKSWGRPSNG 284 (391)
Q Consensus 217 dD~i~i~~~-----------~~nv~i~n~~~~~~~g-i~igs~g~~~~~~~i~nI~i~n~~~~~~~~gi~i~~~~~~~~g 284 (391)
||||+++++ ++|++|+||++..+|| +.+||| ..++++||++|||.|.++..|++||+..+ ++|
T Consensus 309 DD~I~iksg~~~~~~~~~~~~~~i~i~~c~~~~ghG~~v~Gse----~~ggv~ni~ved~~~~~~d~GLRikt~~~-~gG 383 (542)
T COG5434 309 DDCIAIKSGAGLDGKKGYGPSRNIVIRNCYFSSGHGGLVLGSE----MGGGVQNITVEDCVMDNTDRGLRIKTNDG-RGG 383 (542)
T ss_pred CceEEeecccCCcccccccccccEEEecceecccccceEeeee----cCCceeEEEEEeeeeccCcceeeeeeecc-cce
Confidence 999999996 6999999999999997 888999 57889999999999999999999999877 779
Q ss_pred eEEEEEEEEEEEecCCccEEEE
Q 041993 285 FARNILFRNAIMKNVQNPIIID 306 (391)
Q Consensus 285 ~i~nI~~~ni~~~~~~~~i~i~ 306 (391)
.++||+|+++++.++..+..+.
T Consensus 384 ~v~nI~~~~~~~~nv~t~~~i~ 405 (542)
T COG5434 384 GVRNIVFEDNKMRNVKTKLSIN 405 (542)
T ss_pred eEEEEEEecccccCcccceeee
Confidence 9999999999999986444443
No 9
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=99.94 E-value=7.8e-25 Score=210.75 Aligned_cols=248 Identities=17% Similarity=0.239 Sum_probs=192.2
Q ss_pred CCCCeEEeecCCccCCCCcccHHHHHHHHHHHcCCCCCcEEEEcCCeEEEeeeeeeCCccCccEEEEEc-cEEEeccCcc
Q 041993 22 AAPPSYNVVSFGAKPDGRTDSTKAFLSAWANACGSPRAATIYVPPGRFFLRNVAFQGPCKNNRITIRID-GTLVAPSDYR 100 (391)
Q Consensus 22 ~~~~~~~v~d~Ga~~dg~~d~t~aiq~Ai~~a~~~~~g~~v~ip~G~Y~~~~~~l~~~~~s~~~~l~~~-G~l~~~~~~~ 100 (391)
...+.+++++|||++|+.+|+|+|||+||++| + .++++|.+|+|+|+.+++.|+ + +++|.++ |....
T Consensus 33 ~p~r~~dv~~fGa~~dG~td~T~ALQaAIdaA-a-~gG~tV~Lp~G~Y~~G~L~L~----s-pltL~G~~gAt~~----- 100 (455)
T TIGR03808 33 TSTLGRDATQYGVRPNSPDDQTRALQRAIDEA-A-RAQTPLALPPGVYRTGPLRLP----S-GAQLIGVRGATRL----- 100 (455)
T ss_pred CCccCCCHHHcCcCCCCcchHHHHHHHHHHHh-h-cCCCEEEECCCceecccEEEC----C-CcEEEecCCcEEE-----
Confidence 34457899999999999999999999999764 4 346799999999999999998 6 8999998 43210
Q ss_pred ccCCCCceEEEEeeeeeEEeceeEeCCCccccccccCCCCCCCCCeeEEEEeecceEEEeEEEecCCceeEEEecee---
Q 041993 101 VIGNAGNWLFFQHVDGVTLNSGILDGQGTALWACKNSGKNCPSGATSMGFSNCNNIAINGLTSLNSQMYHVVFNGCN--- 177 (391)
Q Consensus 101 ~~~~~~~~i~~~~~~ni~I~GG~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~n~~~~~i~~~~~~--- 177 (391)
.+...+.++...++++|+|+|-+|++.|..| ..++.+|.+..|++++|++++|.++..|++.+..|+
T Consensus 101 vIdG~~~lIiai~A~nVTIsGLtIdGsG~dl----------~~rdAgI~v~~a~~v~Iedn~L~gsg~FGI~L~~~~~~I 170 (455)
T TIGR03808 101 VFTGGPSLLSSEGADGIGLSGLTLDGGGIPL----------PQRRGLIHCQGGRDVRITDCEITGSGGNGIWLETVSGDI 170 (455)
T ss_pred EEcCCceEEEEecCCCeEEEeeEEEeCCCcc----------cCCCCEEEEccCCceEEEeeEEEcCCcceEEEEcCcceE
Confidence 0111144666667999999999999999644 346778999999999999999999999999999999
Q ss_pred -------------------eEEEEeEEEEcCCC--------------------------------CCCCCceeeeccccE
Q 041993 178 -------------------NVKLKGVKVLASGN--------------------------------SPNTDGIHVQLSSDV 206 (391)
Q Consensus 178 -------------------nv~i~n~~i~~~~~--------------------------------~~~~DGi~~~~s~nv 206 (391)
++.|++.+|....+ ...++||++|.+.++
T Consensus 171 ~~N~I~g~~~~~I~lw~S~g~~V~~N~I~g~RD~gi~i~r~~~~~dg~~v~~n~i~~i~a~~gg~~~~GNGI~~~~a~~v 250 (455)
T TIGR03808 171 SGNTITQIAVTAIVSFDALGLIVARNTIIGANDNGIEILRSAIGDDGTIVTDNRIEDIKAGPGGSGQYGNAINAFRAGNV 250 (455)
T ss_pred ecceEeccccceEEEeccCCCEEECCEEEccCCCCeEEEEeeecCCcceeeccccccccccCCCcCCccccEEEEccCCe
Confidence 88888877776444 345788999998999
Q ss_pred EEEeeEEecCC-ceEEeCCCceeEEEEeeEEcCCceEEEeecCCCCCCCcEEEEEEEeeEEeCCceEEEEEEecC-CCCe
Q 041993 207 TILNTRISTGD-DCVSIGPGTSNLWIENVACGPGHGISIGSLGKDLNEAGVQNVTVKTVTFTGTQNGLRIKSWGR-PSNG 284 (391)
Q Consensus 207 ~I~n~~i~~~d-D~i~i~~~~~nv~i~n~~~~~~~gi~igs~g~~~~~~~i~nI~i~n~~~~~~~~gi~i~~~~~-~~~g 284 (391)
+|++++|+..+ |+|.+.+ ++|+.|+++.|..-.-+++-++ ...+.-.|+|+++.+...|+.+.+... ++-.
T Consensus 251 ~V~gN~I~~~r~dgI~~ns-ss~~~i~~N~~~~~R~~alhym------fs~~g~~i~~N~~~g~~~G~av~nf~~ggr~~ 323 (455)
T TIGR03808 251 IVRGNRIRNCDYSAVRGNS-ASNIQITGNSVSDVREVALYSE------FAFEGAVIANNTVDGAAVGVSVCNFNEGGRLA 323 (455)
T ss_pred EEECCEEeccccceEEEEc-ccCcEEECcEeeeeeeeEEEEE------EeCCCcEEeccEEecCcceEEEEeecCCceEE
Confidence 99999999988 9998888 8889999998875332222221 011224588888888888998877543 2445
Q ss_pred eEEEEEEEEEEEec
Q 041993 285 FARNILFRNAIMKN 298 (391)
Q Consensus 285 ~i~nI~~~ni~~~~ 298 (391)
.++.-.+||++-+.
T Consensus 324 ~~~gn~irn~~~~~ 337 (455)
T TIGR03808 324 VVQGNIIRNLIPKR 337 (455)
T ss_pred EEecceeeccccCC
Confidence 77888888888765
No 10
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=99.88 E-value=9.9e-21 Score=172.56 Aligned_cols=213 Identities=24% Similarity=0.400 Sum_probs=114.8
Q ss_pred eEEeecCCccCCCCcccHHHHHHHHHHHcCCCCCcEEEEcCCeEEEee-eeeeCCccCccEEEEEcc----EEEeccCcc
Q 041993 26 SYNVVSFGAKPDGRTDSTKAFLSAWANACGSPRAATIYVPPGRFFLRN-VAFQGPCKNNRITIRIDG----TLVAPSDYR 100 (391)
Q Consensus 26 ~~~v~d~Ga~~dg~~d~t~aiq~Ai~~a~~~~~g~~v~ip~G~Y~~~~-~~l~~~~~s~~~~l~~~G----~l~~~~~~~ 100 (391)
.+||+||||+|||++|||+|||+||+++ +..++++|+||+|+|++.. +.++ + +++|+++| .++......
T Consensus 1 ~inv~~fGa~~dG~tDdt~Aiq~Ai~~~-~~~~g~~v~~P~G~Y~i~~~l~~~----s-~v~l~G~g~~~~~~~~~~~~~ 74 (225)
T PF12708_consen 1 FINVTDFGAKGDGVTDDTAAIQAAIDAA-AAAGGGVVYFPPGTYRISGTLIIP----S-NVTLRGAGGNSTILFLSGSGD 74 (225)
T ss_dssp EEEGGGGT--TEEEEE-HHHHHHHHHHH-CSTTSEEEEE-SEEEEESS-EEE-----T-TEEEEESSTTTEEEEECTTTS
T ss_pred CcceeecCcCCCCChhHHHHHHHhhhhc-ccCCCeEEEEcCcEEEEeCCeEcC----C-CeEEEccCCCeeEEEecCccc
Confidence 3799999999999999999999999554 6678999999999999987 8887 7 99999985 343332322
Q ss_pred ccCCCCceEEEEe-eee--eEEeceeEeCCCccccccccCCCCCCCCCeeEEEEeecceEEEeEEEecCCceeEEEecee
Q 041993 101 VIGNAGNWLFFQH-VDG--VTLNSGILDGQGTALWACKNSGKNCPSGATSMGFSNCNNIAINGLTSLNSQMYHVVFNGCN 177 (391)
Q Consensus 101 ~~~~~~~~i~~~~-~~n--i~I~GG~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~n~~~~~i~~~~~~ 177 (391)
.+........+.. ..+ +.|++.+|++..... ......+.+..+++++|+++++.+....++.+..+.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~i~nl~i~~~~~~~----------~~~~~~i~~~~~~~~~i~nv~~~~~~~~~i~~~~~~ 144 (225)
T PF12708_consen 75 SFSVVPGIGVFDSGNSNIGIQIRNLTIDGNGIDP----------NNNNNGIRFNSSQNVSISNVRIENSGGDGIYFNTGT 144 (225)
T ss_dssp TSCCEEEEEECCSCSCCEEEEEEEEEEEETCGCE-----------SCEEEEEETTEEEEEEEEEEEES-SS-SEEEECCE
T ss_pred ccccccceeeeecCCCCceEEEEeeEEEcccccC----------CCCceEEEEEeCCeEEEEeEEEEccCccEEEEEccc
Confidence 2221111111111 112 235555555554311 011345666667777777777777666666655443
Q ss_pred eEEEEeEEEEcCCCCCCCCceeeec-cccEEEEeeEEecCCceEEeCCCceeEEEEeeEEcC--CceEEEeecCCCCCCC
Q 041993 178 NVKLKGVKVLASGNSPNTDGIHVQL-SSDVTILNTRISTGDDCVSIGPGTSNLWIENVACGP--GHGISIGSLGKDLNEA 254 (391)
Q Consensus 178 nv~i~n~~i~~~~~~~~~DGi~~~~-s~nv~I~n~~i~~~dD~i~i~~~~~nv~i~n~~~~~--~~gi~igs~g~~~~~~ 254 (391)
...+.+..... ++.+.. +.++.+.++.+..+++++.. +.++++++||.+.. ..|+.+-..
T Consensus 145 ~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~~~~~i~n~~~~~~~~~gi~i~~~------- 207 (225)
T PF12708_consen 145 DYRIIGSTHVS--------GIFIDNGSNNVIVNNCIFNGGDNGIIL--GNNNITISNNTFEGNCGNGINIEGG------- 207 (225)
T ss_dssp ECEEECCEEEE--------EEEEESCEEEEEEECEEEESSSCSEEC--EEEEEEEECEEEESSSSESEEEEEC-------
T ss_pred cCcEeecccce--------eeeeccceeEEEECCccccCCCceeEe--ecceEEEEeEEECCccceeEEEECC-------
Confidence 33333222211 122221 24455566666655555221 13555555555543 234544222
Q ss_pred cEEEEEEEeeEEeCCceEE
Q 041993 255 GVQNVTVKTVTFTGTQNGL 273 (391)
Q Consensus 255 ~i~nI~i~n~~~~~~~~gi 273 (391)
.+++|+|+++.++..|+
T Consensus 208 --~~~~i~n~~i~~~~~g~ 224 (225)
T PF12708_consen 208 --SNIIISNNTIENCDDGI 224 (225)
T ss_dssp --SEEEEEEEEEESSSEEE
T ss_pred --eEEEEEeEEEECCccCc
Confidence 22555555555554444
No 11
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=99.84 E-value=3.4e-18 Score=167.39 Aligned_cols=220 Identities=18% Similarity=0.238 Sum_probs=169.5
Q ss_pred cEEEEEccEEEeccCccccC-----------CCCceEEEEeeeeeEEeceeEeCCCccccccccCCCCCCCCCeeEEEEe
Q 041993 84 RITIRIDGTLVAPSDYRVIG-----------NAGNWLFFQHVDGVTLNSGILDGQGTALWACKNSGKNCPSGATSMGFSN 152 (391)
Q Consensus 84 ~~~l~~~G~l~~~~~~~~~~-----------~~~~~i~~~~~~ni~I~GG~idg~g~~~w~~~~~~~~~~~~~~~i~~~~ 152 (391)
+++|.+.|+|..... .-|. ....++.+.+++|+.|+|-++.-. +.| .+++.+
T Consensus 123 ni~I~G~G~IDG~G~-~ww~~~~~~~~~~~~~rP~~i~f~~~~nv~i~gitl~nS--p~w--------------~i~~~~ 185 (404)
T PLN02188 123 GLTLTGGGTFDGQGA-AAWPFNKCPIRKDCKLLPTSVKFVNMNNTVVRGITSVNS--KFF--------------HIALVE 185 (404)
T ss_pred eEEEEeeEEEeCCCc-ccccccccccCCCCCcCceEEEEEeeeeEEEeCeEEEcC--CCe--------------EEEEEc
Confidence 788888888775432 1221 113478999999999999655322 222 589999
Q ss_pred ecceEEEeEEEecC----CceeEEEeceeeEEEEeEEEEcCCCCCCCCceeee-ccccEEEEeeEEecCCceEEeCC---
Q 041993 153 CNNIAINGLTSLNS----QMYHVVFNGCNNVKLKGVKVLASGNSPNTDGIHVQ-LSSDVTILNTRISTGDDCVSIGP--- 224 (391)
Q Consensus 153 ~~nv~i~~v~i~n~----~~~~i~~~~~~nv~i~n~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~--- 224 (391)
|+|++|++++|.++ ...++++..|+||+|+|++|.+.+ |+|.+. .++||+|+|+.+..+ .++++++
T Consensus 186 ~~~v~i~~v~I~~~~~spNtDGidi~~s~nV~I~n~~I~~GD-----DcIaiksg~~nI~I~n~~c~~g-hGisiGSlG~ 259 (404)
T PLN02188 186 CRNFKGSGLKISAPSDSPNTDGIHIERSSGVYISDSRIGTGD-----DCISIGQGNSQVTITRIRCGPG-HGISVGSLGR 259 (404)
T ss_pred cccEEEEEEEEeCCCCCCCCCcEeeeCcccEEEEeeEEeCCC-----cEEEEccCCccEEEEEEEEcCC-CcEEeCCCCC
Confidence 99999999999864 346899999999999999999854 688886 478999999999766 5799877
Q ss_pred -----CceeEEEEeeEEcCC-ceEEEeecCCCCCCCcEEEEEEEeeEEeCCceEEEEEEecCC---------CCeeEEEE
Q 041993 225 -----GTSNLWIENVACGPG-HGISIGSLGKDLNEAGVQNVTVKTVTFTGTQNGLRIKSWGRP---------SNGFARNI 289 (391)
Q Consensus 225 -----~~~nv~i~n~~~~~~-~gi~igs~g~~~~~~~i~nI~i~n~~~~~~~~gi~i~~~~~~---------~~g~i~nI 289 (391)
+.+||+|+||++.+. +|++|++.....+.+.++||+|+|++|.+...+|.|.+.+.+ ....++||
T Consensus 260 ~~~~~~V~nV~v~n~~~~~t~~GiriKt~~g~~~~G~v~nI~f~ni~m~~v~~pI~i~~~Y~~~~~~~~~~~s~v~I~nI 339 (404)
T PLN02188 260 YPNEGDVTGLVVRDCTFTGTTNGIRIKTWANSPGKSAATNMTFENIVMNNVTNPIIIDQKYCPFYSCESKYPSGVTLSDI 339 (404)
T ss_pred CCcCCcEEEEEEEeeEEECCCcEEEEEEecCCCCceEEEEEEEEeEEecCccceEEEEccccCCCCCCcCCCCCcEEEeE
Confidence 379999999999986 699999864333346799999999999999999998764321 23579999
Q ss_pred EEEEEEEecCC-ccEEEEeeeCCCCCCCCCCCcceEEEeEEEEeEEEeeC
Q 041993 290 LFRNAIMKNVQ-NPIIIDQNYCPDNIGCPGQVSGVKISDVTYQDVHGTSA 338 (391)
Q Consensus 290 ~~~ni~~~~~~-~~i~i~~~~~~~~~~~~~~~~~~~i~nI~~~ni~~~~~ 338 (391)
+|+|++.+... .++.+... +..+.+||+|+||+++..
T Consensus 340 t~~nI~gt~~~~~a~~l~cs------------~~~pc~ni~~~nV~i~~~ 377 (404)
T PLN02188 340 YFKNIRGTSSSQVAVLLKCS------------RGVPCQGVYLQDVHLDLS 377 (404)
T ss_pred EEEEEEEEecCceEEEEEEC------------CCCCEeeEEEEeeEEEec
Confidence 99999998753 45555531 234699999999999755
No 12
>PLN02793 Probable polygalacturonase
Probab=99.84 E-value=3.4e-18 Score=169.25 Aligned_cols=219 Identities=17% Similarity=0.228 Sum_probs=168.7
Q ss_pred cEEEEEccEEEeccCccccCC------------CCceEEEEeeeeeEEeceeEeCCCccccccccCCCCCCCCCeeEEEE
Q 041993 84 RITIRIDGTLVAPSDYRVIGN------------AGNWLFFQHVDGVTLNSGILDGQGTALWACKNSGKNCPSGATSMGFS 151 (391)
Q Consensus 84 ~~~l~~~G~l~~~~~~~~~~~------------~~~~i~~~~~~ni~I~GG~idg~g~~~w~~~~~~~~~~~~~~~i~~~ 151 (391)
++++.+.|+|...... -|.. ...++.+.+++|++|+|-++.-. + ...+++.
T Consensus 144 ni~ItG~G~IDG~G~~-ww~~~~~~~~~~~~~~rP~~i~f~~~~nv~v~gitl~nS-p---------------~~~i~~~ 206 (443)
T PLN02793 144 HLTVEGGGTVNGMGHE-WWAQSCKINHTNPCRHAPTAITFHKCKDLRVENLNVIDS-Q---------------QMHIAFT 206 (443)
T ss_pred eEEEEeceEEECCCcc-cccccccccCCCCccCCceEEEEEeeccEEEECeEEEcC-C---------------CeEEEEE
Confidence 7888888877653221 1110 13478999999999999554311 1 2258899
Q ss_pred eecceEEEeEEEecC----CceeEEEeceeeEEEEeEEEEcCCCCCCCCceeee-ccccEEEEeeEEecCCceEEeCC--
Q 041993 152 NCNNIAINGLTSLNS----QMYHVVFNGCNNVKLKGVKVLASGNSPNTDGIHVQ-LSSDVTILNTRISTGDDCVSIGP-- 224 (391)
Q Consensus 152 ~~~nv~i~~v~i~n~----~~~~i~~~~~~nv~i~n~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~-- 224 (391)
+|+|++|++++|.++ ...++++..|+||+|+|++|.+.+ |+|-+. .|+||+|+||.+..+ .++++++
T Consensus 207 ~~~nv~i~~l~I~~p~~spNTDGIdi~~s~nV~I~n~~I~~gD-----DcIaik~~s~nI~I~n~~c~~G-hGisIGSlg 280 (443)
T PLN02793 207 NCRRVTISGLKVIAPATSPNTDGIHISASRGVVIKDSIVRTGD-----DCISIVGNSSRIKIRNIACGPG-HGISIGSLG 280 (443)
T ss_pred ccCcEEEEEEEEECCCCCCCCCcEeeeccceEEEEeCEEeCCC-----CeEEecCCcCCEEEEEeEEeCC-ccEEEeccc
Confidence 999999999999864 346899999999999999999854 678886 589999999999876 4699987
Q ss_pred ------CceeEEEEeeEEcCC-ceEEEeecCCCCCCCcEEEEEEEeeEEeCCceEEEEEEecCC---------CCeeEEE
Q 041993 225 ------GTSNLWIENVACGPG-HGISIGSLGKDLNEAGVQNVTVKTVTFTGTQNGLRIKSWGRP---------SNGFARN 288 (391)
Q Consensus 225 ------~~~nv~i~n~~~~~~-~gi~igs~g~~~~~~~i~nI~i~n~~~~~~~~gi~i~~~~~~---------~~g~i~n 288 (391)
+.+||+|+||++.+. +|++|++.... .+.++||+|+|++|.+..++|.|.+.+.. ....++|
T Consensus 281 ~~~~~~~V~nV~v~n~~~~~t~~GirIKt~~g~--~G~v~nItf~ni~m~nv~~pI~I~q~Y~~~~~~~~~~ts~v~I~n 358 (443)
T PLN02793 281 KSNSWSEVRDITVDGAFLSNTDNGVRIKTWQGG--SGNASKITFQNIFMENVSNPIIIDQYYCDSRKPCANQTSAVKVEN 358 (443)
T ss_pred CcCCCCcEEEEEEEccEEeCCCceEEEEEeCCC--CEEEEEEEEEeEEEecCCceEEEEeeecCCCCCCCCCCCCeEEEe
Confidence 269999999999975 69999986322 35799999999999999999999875531 1236899
Q ss_pred EEEEEEEEecCC-ccEEEEeeeCCCCCCCCCCCcceEEEeEEEEeEEEeeCC
Q 041993 289 ILFRNAIMKNVQ-NPIIIDQNYCPDNIGCPGQVSGVKISDVTYQDVHGTSAT 339 (391)
Q Consensus 289 I~~~ni~~~~~~-~~i~i~~~~~~~~~~~~~~~~~~~i~nI~~~ni~~~~~~ 339 (391)
|+|+|++.+... .++.+... +..+++||+|+||+++...
T Consensus 359 I~~~nI~Gt~~~~~ai~l~cs------------~~~pc~ni~l~nI~l~~~~ 398 (443)
T PLN02793 359 ISFVHIKGTSATEEAIKFACS------------DSSPCEGLYLEDVQLLSST 398 (443)
T ss_pred EEEEEEEEEEcccccEEEEeC------------CCCCEeeEEEEeeEEEecC
Confidence 999999988753 45666532 2336999999999988653
No 13
>PLN02155 polygalacturonase
Probab=99.83 E-value=5.1e-18 Score=165.44 Aligned_cols=198 Identities=16% Similarity=0.199 Sum_probs=156.7
Q ss_pred ceEEEEeeeeeEEeceeEeCCCccccccccCCCCCCCCCeeEEEEeecceEEEeEEEecCC----ceeEEEeceeeEEEE
Q 041993 107 NWLFFQHVDGVTLNSGILDGQGTALWACKNSGKNCPSGATSMGFSNCNNIAINGLTSLNSQ----MYHVVFNGCNNVKLK 182 (391)
Q Consensus 107 ~~i~~~~~~ni~I~GG~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~n~~----~~~i~~~~~~nv~i~ 182 (391)
.++.+.+++|++|+|-++.-. + ...+++.+|+|++|++++|.++. ..++++..|+||+|+
T Consensus 146 ~~i~~~~~~nv~i~gitl~nS--p--------------~w~i~~~~~~nv~i~~v~I~~p~~~~NtDGidi~~s~nV~I~ 209 (394)
T PLN02155 146 RSISFNSAKDVIISGVKSMNS--Q--------------VSHMTLNGCTNVVVRNVKLVAPGNSPNTDGFHVQFSTGVTFT 209 (394)
T ss_pred cceeEEEeeeEEEECeEEEcC--C--------------CeEEEEECeeeEEEEEEEEECCCCCCCCCccccccceeEEEE
Confidence 478999999999999555311 1 23589999999999999998743 368999999999999
Q ss_pred eEEEEcCCCCCCCCceeeec-cccEEEEeeEEecCCceEEeCCC--------ceeEEEEeeEEcCC-ceEEEeecCCCCC
Q 041993 183 GVKVLASGNSPNTDGIHVQL-SSDVTILNTRISTGDDCVSIGPG--------TSNLWIENVACGPG-HGISIGSLGKDLN 252 (391)
Q Consensus 183 n~~i~~~~~~~~~DGi~~~~-s~nv~I~n~~i~~~dD~i~i~~~--------~~nv~i~n~~~~~~-~gi~igs~g~~~~ 252 (391)
|++|.+.+ |+|.+.+ |+||+|+||.+..+ .++++++. .+||+|+||++.+. +|++|++.... .
T Consensus 210 ~~~I~~gD-----DcIaik~gs~nI~I~n~~c~~G-hGisIGS~g~~~~~~~V~nV~v~n~~~~~t~~GirIKT~~~~-~ 282 (394)
T PLN02155 210 GSTVQTGD-----DCVAIGPGTRNFLITKLACGPG-HGVSIGSLAKELNEDGVENVTVSSSVFTGSQNGVRIKSWARP-S 282 (394)
T ss_pred eeEEecCC-----ceEEcCCCCceEEEEEEEEECC-ceEEeccccccCCCCcEEEEEEEeeEEeCCCcEEEEEEecCC-C
Confidence 99999854 6788875 78999999999876 57999882 59999999999875 69999985221 2
Q ss_pred CCcEEEEEEEeeEEeCCceEEEEEEecCC---------CCeeEEEEEEEEEEEecCC-ccEEEEeeeCCCCCCCCCCCcc
Q 041993 253 EAGVQNVTVKTVTFTGTQNGLRIKSWGRP---------SNGFARNILFRNAIMKNVQ-NPIIIDQNYCPDNIGCPGQVSG 322 (391)
Q Consensus 253 ~~~i~nI~i~n~~~~~~~~gi~i~~~~~~---------~~g~i~nI~~~ni~~~~~~-~~i~i~~~~~~~~~~~~~~~~~ 322 (391)
.+.++||+|+|++|.+...+|.|.+.+.. ....++||+|+|++.+... .++.+... +.
T Consensus 283 gG~v~nI~f~ni~m~~v~~pI~i~q~Y~~~~~~~~~~~s~v~i~~It~~ni~gt~~~~~a~~l~c~------------~~ 350 (394)
T PLN02155 283 TGFVRNVFFQDLVMKNVENPIIIDQNYCPTHEGCPNEYSGVKISQVTYKNIQGTSATQEAMKLVCS------------KS 350 (394)
T ss_pred CEEEEEEEEEeEEEcCccccEEEEecccCCCCCCcCCCCCeEEEEEEEEeeEEEecCCceEEEEeC------------CC
Confidence 35799999999999999999999765421 1136899999999998763 45555531 23
Q ss_pred eEEEeEEEEeEEEeeCC
Q 041993 323 VKISDVTYQDVHGTSAT 339 (391)
Q Consensus 323 ~~i~nI~~~ni~~~~~~ 339 (391)
.+.+||+|+||.++...
T Consensus 351 ~pc~~I~l~nv~i~~~~ 367 (394)
T PLN02155 351 SPCTGITLQDIKLTYNK 367 (394)
T ss_pred CCEEEEEEEeeEEEecC
Confidence 46999999999988653
No 14
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of dextranase (3.2.1.11 from EC) and isopullulanase (3.2.1.57 from EC) which are all members of glycoside hydrolase family 49 (GH49 from CAZY). Dextranase hydrolyses alpha-1,6-glycosidic bonds in dextran polymers.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1X0C_A 1WMR_A 2Z8G_B 1OGM_X 1OGO_X.
Probab=99.83 E-value=5.7e-18 Score=164.76 Aligned_cols=275 Identities=17% Similarity=0.239 Sum_probs=156.5
Q ss_pred CcEEEEcCCeEEEee---eeeeCCccCcc-EEEEEc-cEEEeccCccccCCCCceEEEEeeeeeEEec-eeEeCCCcccc
Q 041993 59 AATIYVPPGRFFLRN---VAFQGPCKNNR-ITIRID-GTLVAPSDYRVIGNAGNWLFFQHVDGVTLNS-GILDGQGTALW 132 (391)
Q Consensus 59 g~~v~ip~G~Y~~~~---~~l~~~~~s~~-~~l~~~-G~l~~~~~~~~~~~~~~~i~~~~~~ni~I~G-G~idg~g~~~w 132 (391)
-.++||+||+|.++. +.|+ + + .+++++ |.+.. +++.....++|+.|.| |+|.|..+.|-
T Consensus 232 ~~~lYF~PGVy~ig~~~~l~L~----s-n~~~VYlApGAyVk----------GAf~~~~~~~nv~i~G~GVLSGe~Yvy~ 296 (582)
T PF03718_consen 232 KDTLYFKPGVYWIGSDYHLRLP----S-NTKWVYLAPGAYVK----------GAFEYTDTQQNVKITGRGVLSGEQYVYE 296 (582)
T ss_dssp SSEEEE-SEEEEEBCTC-EEE-----T-T--EEEE-TTEEEE----------S-EEE---SSEEEEESSSEEE-TTS-TT
T ss_pred cceEEeCCceEEeCCCccEEEC----C-CccEEEEcCCcEEE----------EEEEEccCCceEEEEeeEEEcCcceeEe
Confidence 469999999999986 7776 5 5 589998 64443 4454445789999999 99999877553
Q ss_pred ccccC-------CCCC-CCCCeeEE---EEeecceEEEeEEEecCCceeEEEecee----eEEEEeEEEEcCCCCCCCCc
Q 041993 133 ACKNS-------GKNC-PSGATSMG---FSNCNNIAINGLTSLNSQMYHVVFNGCN----NVKLKGVKVLASGNSPNTDG 197 (391)
Q Consensus 133 ~~~~~-------~~~~-~~~~~~i~---~~~~~nv~i~~v~i~n~~~~~i~~~~~~----nv~i~n~~i~~~~~~~~~DG 197 (391)
..... +... ...-+++. ...+.+++++|++|.++|+|.+.+.+.+ ...|+|.++..... .++||
T Consensus 297 A~~~e~y~~~s~A~~~~~~~lkm~~~~~~~g~q~~~~~GiTI~~pP~~Sm~l~g~~~~~~~~~i~nyKqVGaW~-~qtDG 375 (582)
T PF03718_consen 297 ADTEESYLHLSGAVKCHRESLKMLWHISANGGQTLTCEGITINDPPFHSMDLYGNENDKFSMNISNYKQVGAWY-FQTDG 375 (582)
T ss_dssp BBCCCTTSB-SSC---TTTB--SEEECS-SSSEEEEEES-EEE--SS-SEEEESSSGGGEEEEEEEEEEE---C-TT---
T ss_pred ccCCCCccccccccccchhhhhhhhhhccCCcceEEEEeeEecCCCcceEEecCCccccccceeeceeeeeeEE-eccCC
Confidence 21111 0000 11224444 3346699999999999999999999665 48999999998654 79999
Q ss_pred eeeeccccEEEEeeEEecCCceEEeCCCceeEEEEeeEEcCCc--e-EEEeecCCCCCCCcEEEEEEEeeEEeCCc----
Q 041993 198 IHVQLSSDVTILNTRISTGDDCVSIGPGTSNLWIENVACGPGH--G-ISIGSLGKDLNEAGVQNVTVKTVTFTGTQ---- 270 (391)
Q Consensus 198 i~~~~s~nv~I~n~~i~~~dD~i~i~~~~~nv~i~n~~~~~~~--g-i~igs~g~~~~~~~i~nI~i~n~~~~~~~---- 270 (391)
|.+. +|-+|+||+++..||+|.+.. +++.++||++|..+ + +.+|.. ...++||.|+|+.+.+++
T Consensus 376 i~ly--~nS~i~dcF~h~nDD~iKlYh--S~v~v~~~ViWk~~Ngpiiq~GW~-----pr~isnv~veni~IIh~r~~~~ 446 (582)
T PF03718_consen 376 IELY--PNSTIRDCFIHVNDDAIKLYH--SNVSVSNTVIWKNENGPIIQWGWT-----PRNISNVSVENIDIIHNRWIWH 446 (582)
T ss_dssp -B----TT-EEEEEEEEESS-SEE--S--TTEEEEEEEEEE-SSS-SEE--CS--------EEEEEEEEEEEEE---SSG
T ss_pred cccc--CCCeeeeeEEEecCchhheee--cCcceeeeEEEecCCCCeEEeecc-----ccccCceEEeeeEEEeeeeecc
Confidence 9997 688899999999999998776 79999999999643 2 888765 346899999999999863
Q ss_pred -----eEEEEEEecC----C-----CCeeEEEEEEEEEEEecCC-ccEEEEeeeCCCCCCCCCCCcceEEEeEEEEeEEE
Q 041993 271 -----NGLRIKSWGR----P-----SNGFARNILFRNAIMKNVQ-NPIIIDQNYCPDNIGCPGQVSGVKISDVTYQDVHG 335 (391)
Q Consensus 271 -----~gi~i~~~~~----~-----~~g~i~nI~~~ni~~~~~~-~~i~i~~~~~~~~~~~~~~~~~~~i~nI~~~ni~~ 335 (391)
.+|.-.+... . ..-.+++++|+|+++++.. ..++|...- ...+..|+|+.|+.+.+
T Consensus 447 ~~~~n~~I~~ss~~y~~~~s~~~adp~~ti~~~~~~nv~~EG~~~~l~ri~plq---------n~~nl~ikN~~~~~w~~ 517 (582)
T PF03718_consen 447 NNYVNTAILGSSPFYDDMASTKTADPSTTIRNMTFSNVRCEGMCPCLFRIYPLQ---------NYDNLVIKNVHFESWNG 517 (582)
T ss_dssp GCTTT-ECEEE--BTTS-SSS--BEEEEEEEEEEEEEEEEECCE-ECEEE--SE---------EEEEEEEEEEEECEET-
T ss_pred cCCCCceeEecccccccccCCCCCCcccceeeEEEEeEEEecccceeEEEeecC---------CCcceEEEEeecccccC
Confidence 3553332211 0 1236899999999999864 455665310 01223455555554432
Q ss_pred eeCCcceEEEec------CCCCceecEEEEeeEEEecC
Q 041993 336 TSATEVAVNFDC------SSKYPCSRIRLEDVKLTYKN 367 (391)
Q Consensus 336 ~~~~~~~~~i~~------~~~~~~~~v~~~nv~v~~~~ 367 (391)
..-......+.. .......+|.|+|.+|..+.
T Consensus 518 ~~~~~~~s~~k~~~~~~~~~~~~~~gi~i~N~tVgg~~ 555 (582)
T PF03718_consen 518 LDITSQVSGLKAYYNMANNKQNDTMGIIIENWTVGGEK 555 (582)
T ss_dssp CGCSTT-EEE---CCTTT--B--EEEEEEEEEEETTEE
T ss_pred cccccceeeccccccccccccccccceEEEeEEECCEE
Confidence 221111222221 11234789999999887543
No 15
>PLN02218 polygalacturonase ADPG
Probab=99.83 E-value=7.5e-18 Score=166.10 Aligned_cols=206 Identities=20% Similarity=0.289 Sum_probs=162.5
Q ss_pred eeEEEEeecceEEEe---EEEecC-------------------CceeEEEeceeeEEEEeEEEEcCCCCCCCCceeeecc
Q 041993 146 TSMGFSNCNNIAING---LTSLNS-------------------QMYHVVFNGCNNVKLKGVKVLASGNSPNTDGIHVQLS 203 (391)
Q Consensus 146 ~~i~~~~~~nv~i~~---v~i~n~-------------------~~~~i~~~~~~nv~i~n~~i~~~~~~~~~DGi~~~~s 203 (391)
..|.+.+.+|++|+| =+|... ....+.+..|+|++|+++++.+++. .-+++..|
T Consensus 148 ~wi~~~~~~ni~I~G~~~GtIDG~G~~WW~~~~~~~~~~~~~~rP~~i~f~~~~nv~I~gitl~nSp~----w~i~~~~~ 223 (431)
T PLN02218 148 KWIMFDGVNNLSVDGGSTGVVDGNGETWWQNSCKRNKAKPCTKAPTALTFYNSKSLIVKNLRVRNAQQ----IQISIEKC 223 (431)
T ss_pred cCEEEecCcEEEEECCCCcEEeCCchhhhhcccccCCcCccCcCCEEEEEEccccEEEeCeEEEcCCC----EEEEEEce
Confidence 357888999999988 333211 1235788999999999999999764 24888899
Q ss_pred ccEEEEeeEEec-----CCceEEeCCCceeEEEEeeEEcCCc-eEEEeecCCCCCCCcEEEEEEEeeEEeCCceEEEEEE
Q 041993 204 SDVTILNTRIST-----GDDCVSIGPGTSNLWIENVACGPGH-GISIGSLGKDLNEAGVQNVTVKTVTFTGTQNGLRIKS 277 (391)
Q Consensus 204 ~nv~I~n~~i~~-----~dD~i~i~~~~~nv~i~n~~~~~~~-gi~igs~g~~~~~~~i~nI~i~n~~~~~~~~gi~i~~ 277 (391)
+||+|+|.+|.+ .-|+|.+.+ ++||+|+||.+..++ .|+|++. .+||+|+||++.. .+|+.|.|
T Consensus 224 ~nV~i~~v~I~a~~~spNTDGIdi~s-s~nV~I~n~~I~tGDDcIaIksg--------s~nI~I~n~~c~~-GHGisIGS 293 (431)
T PLN02218 224 SNVQVSNVVVTAPADSPNTDGIHITN-TQNIRVSNSIIGTGDDCISIESG--------SQNVQINDITCGP-GHGISIGS 293 (431)
T ss_pred eeEEEEEEEEeCCCCCCCCCcEeecc-cceEEEEccEEecCCceEEecCC--------CceEEEEeEEEEC-CCCEEECc
Confidence 999999999986 358999988 999999999999875 6999763 4899999999975 47999988
Q ss_pred ecCC-CCeeEEEEEEEEEEEecCCccEEEEeeeCCCCCCCCCCCcceEEEeEEEEeEEEeeCCcceEEEecCC-------
Q 041993 278 WGRP-SNGFARNILFRNAIMKNVQNPIIIDQNYCPDNIGCPGQVSGVKISDVTYQDVHGTSATEVAVNFDCSS------- 349 (391)
Q Consensus 278 ~~~~-~~g~i~nI~~~ni~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~i~nI~~~ni~~~~~~~~~~~i~~~~------- 349 (391)
.... ..+.|+||+|+|+++.+..++++|+++.. ..+.++||+|+||++..... |+.+....
T Consensus 294 ~g~~~~~~~V~nV~v~n~~~~~t~nGvRIKT~~G----------g~G~v~nI~f~ni~m~~V~~-pI~Idq~Y~~~~~~~ 362 (431)
T PLN02218 294 LGDDNSKAFVSGVTVDGAKLSGTDNGVRIKTYQG----------GSGTASNIIFQNIQMENVKN-PIIIDQDYCDKSKCT 362 (431)
T ss_pred CCCCCCCceEEEEEEEccEEecCCcceEEeecCC----------CCeEEEEEEEEeEEEEcccc-cEEEEeeccCCCCCC
Confidence 7431 24689999999999999999999998522 34589999999999999875 67774321
Q ss_pred ----CCceecEEEEeeEEEecC-CCccceeec
Q 041993 350 ----KYPCSRIRLEDVKLTYKN-QPAAASCSH 376 (391)
Q Consensus 350 ----~~~~~~v~~~nv~v~~~~-~~~~~~c~~ 376 (391)
...++||+|+||+.+... .+..+.|..
T Consensus 363 ~~~s~v~I~nI~~~NI~gtsa~~~ai~l~cs~ 394 (431)
T PLN02218 363 SQQSAVQVKNVVYRNISGTSASDVAITFNCSK 394 (431)
T ss_pred CCCCCeEEEEEEEEeEEEEecCCcEEEEEECC
Confidence 124899999999998764 334455543
No 16
>PLN03010 polygalacturonase
Probab=99.82 E-value=2.1e-17 Score=161.59 Aligned_cols=206 Identities=16% Similarity=0.286 Sum_probs=161.6
Q ss_pred eeEEEEeecceEEEeEEEecC---Cce-eEEEeceeeEEEEeEEEEcCCCCCCCCceeeeccccEEEEeeEEec-----C
Q 041993 146 TSMGFSNCNNIAINGLTSLNS---QMY-HVVFNGCNNVKLKGVKVLASGNSPNTDGIHVQLSSDVTILNTRIST-----G 216 (391)
Q Consensus 146 ~~i~~~~~~nv~i~~v~i~n~---~~~-~i~~~~~~nv~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~-----~ 216 (391)
..+.+.+.+|+.|.|==..+. ..| .+.+..|+|++|+++++.+++. .-+++..|+||+|++.++.+ .
T Consensus 131 ~wi~f~~v~nv~I~G~G~IDG~G~~ww~~l~~~~~~nv~v~gitl~nsp~----~~i~i~~~~nv~i~~i~I~a~~~s~N 206 (409)
T PLN03010 131 MWISFSTVSGLMIDGSGTIDGRGSSFWEALHISKCDNLTINGITSIDSPK----NHISIKTCNYVAISKINILAPETSPN 206 (409)
T ss_pred ceEEEecccccEEeeceEEeCCCccccceEEEEeecCeEEeeeEEEcCCc----eEEEEeccccEEEEEEEEeCCCCCCC
Confidence 357889999999998433332 234 5889999999999999999764 24788899999999999986 3
Q ss_pred CceEEeCCCceeEEEEeeEEcCCc-eEEEeecCCCCCCCcEEEEEEEeeEEeCCceEEEEEEecCC-CCeeEEEEEEEEE
Q 041993 217 DDCVSIGPGTSNLWIENVACGPGH-GISIGSLGKDLNEAGVQNVTVKTVTFTGTQNGLRIKSWGRP-SNGFARNILFRNA 294 (391)
Q Consensus 217 dD~i~i~~~~~nv~i~n~~~~~~~-gi~igs~g~~~~~~~i~nI~i~n~~~~~~~~gi~i~~~~~~-~~g~i~nI~~~ni 294 (391)
-|+|.+.. ++||+|+||.+..++ +|+|++. ..++.|+++.+.. .+|+.|.+.... ....|+||+|+|+
T Consensus 207 TDGiDi~~-s~nV~I~n~~I~~gDDcIaiksg--------s~ni~I~~~~C~~-gHGisIGS~g~~~~~~~V~nV~v~n~ 276 (409)
T PLN03010 207 TDGIDISY-STNINIFDSTIQTGDDCIAINSG--------SSNINITQINCGP-GHGISVGSLGADGANAKVSDVHVTHC 276 (409)
T ss_pred CCceeeec-cceEEEEeeEEecCCCeEEecCC--------CCcEEEEEEEeEC-cCCEEEccCCCCCCCCeeEEEEEEee
Confidence 58999987 899999999999875 7999774 2467788888865 479999987431 2346999999999
Q ss_pred EEecCCccEEEEeeeCCCCCCCCCCCcceEEEeEEEEeEEEeeCCcceEEEecCC------------CCceecEEEEeeE
Q 041993 295 IMKNVQNPIIIDQNYCPDNIGCPGQVSGVKISDVTYQDVHGTSATEVAVNFDCSS------------KYPCSRIRLEDVK 362 (391)
Q Consensus 295 ~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~i~nI~~~ni~~~~~~~~~~~i~~~~------------~~~~~~v~~~nv~ 362 (391)
++.+..++++|+.+.. +.+.++||+|+||++..... |+.++..+ ..+++||+|+||+
T Consensus 277 ~i~~t~~GirIKt~~G----------~~G~v~nItf~nI~m~~v~~-pI~I~q~Y~~~~~~~~~~~s~v~Isdi~~~ni~ 345 (409)
T PLN03010 277 TFNQTTNGARIKTWQG----------GQGYARNISFENITLINTKN-PIIIDQQYIDKGKLDATKDSAVAISNVKYVGFR 345 (409)
T ss_pred EEeCCCcceEEEEecC----------CCEEEEEeEEEeEEEecCCc-cEEEEeeccCCCCCCCCCCCceEEEeEEEEeeE
Confidence 9999999999998632 24589999999999999864 67774311 1257999999999
Q ss_pred EEecC-CCccceeec
Q 041993 363 LTYKN-QPAAASCSH 376 (391)
Q Consensus 363 v~~~~-~~~~~~c~~ 376 (391)
-+... .+..+.|+.
T Consensus 346 GT~~~~~~i~l~Cs~ 360 (409)
T PLN03010 346 GTTSNENAITLKCSA 360 (409)
T ss_pred EEeCCCccEEEEeCC
Confidence 98665 455677654
No 17
>PLN03003 Probable polygalacturonase At3g15720
Probab=99.82 E-value=1.9e-17 Score=162.81 Aligned_cols=206 Identities=21% Similarity=0.282 Sum_probs=162.9
Q ss_pred eeEEEEeecceEEEeE-EEecC----------CceeEEEeceeeEEEEeEEEEcCCCCCCCCceeeeccccEEEEeeEEe
Q 041993 146 TSMGFSNCNNIAINGL-TSLNS----------QMYHVVFNGCNNVKLKGVKVLASGNSPNTDGIHVQLSSDVTILNTRIS 214 (391)
Q Consensus 146 ~~i~~~~~~nv~i~~v-~i~n~----------~~~~i~~~~~~nv~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~ 214 (391)
..|.+.+++|++|.|= +|... ....+.+..|+|++|+++++.+++. -.+++..|+||+|++.++.
T Consensus 105 ~wI~f~~~~~i~I~G~GtIDGqG~~wW~~~~~rP~~l~f~~~~nv~I~gitl~NSp~----w~i~i~~c~nV~i~~l~I~ 180 (456)
T PLN03003 105 QWILFTDIEGLVIEGDGEINGQGSSWWEHKGSRPTALKFRSCNNLRLSGLTHLDSPM----AHIHISECNYVTISSLRIN 180 (456)
T ss_pred ceEEEEcccceEEeccceEeCCchhhhhcccCCceEEEEEecCCcEEeCeEEecCCc----EEEEEeccccEEEEEEEEe
Confidence 3688999999999973 33221 1236899999999999999999764 2478889999999999998
Q ss_pred cC-----CceEEeCCCceeEEEEeeEEcCCc-eEEEeecCCCCCCCcEEEEEEEeeEEeCCceEEEEEEecCC-CCeeEE
Q 041993 215 TG-----DDCVSIGPGTSNLWIENVACGPGH-GISIGSLGKDLNEAGVQNVTVKTVTFTGTQNGLRIKSWGRP-SNGFAR 287 (391)
Q Consensus 215 ~~-----dD~i~i~~~~~nv~i~n~~~~~~~-gi~igs~g~~~~~~~i~nI~i~n~~~~~~~~gi~i~~~~~~-~~g~i~ 287 (391)
+. -|||.+.+ ++||+|+||.+..++ +|+|++. .+||+|+|+++... +||.|.+.... ..+.|+
T Consensus 181 ap~~spNTDGIDi~~-S~nV~I~n~~I~tGDDCIaiksg--------s~NI~I~n~~c~~G-HGISIGSlg~~g~~~~V~ 250 (456)
T PLN03003 181 APESSPNTDGIDVGA-SSNVVIQDCIIATGDDCIAINSG--------TSNIHISGIDCGPG-HGISIGSLGKDGETATVE 250 (456)
T ss_pred CCCCCCCCCcEeecC-cceEEEEecEEecCCCeEEeCCC--------CccEEEEeeEEECC-CCeEEeeccCCCCcceEE
Confidence 73 58999988 999999999999875 6999763 48999999999764 79999987531 235799
Q ss_pred EEEEEEEEEecCCccEEEEeeeCCCCCCCCCCCcceEEEeEEEEeEEEeeCCcceEEEecCC--------------CCce
Q 041993 288 NILFRNAIMKNVQNPIIIDQNYCPDNIGCPGQVSGVKISDVTYQDVHGTSATEVAVNFDCSS--------------KYPC 353 (391)
Q Consensus 288 nI~~~ni~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~i~nI~~~ni~~~~~~~~~~~i~~~~--------------~~~~ 353 (391)
||+++|+++.+..++++|+++.. +.+.++||+|+||++..... |+.++... ...+
T Consensus 251 NV~v~n~~~~~T~nGvRIKT~~G----------g~G~v~nItf~nI~m~nV~~-pI~Idq~Y~~~~~~~~~~~~~s~v~I 319 (456)
T PLN03003 251 NVCVQNCNFRGTMNGARIKTWQG----------GSGYARMITFNGITLDNVEN-PIIIDQFYNGGDSDNAKDRKSSAVEV 319 (456)
T ss_pred EEEEEeeEEECCCcEEEEEEeCC----------CCeEEEEEEEEeEEecCccc-eEEEEcccCCCCCCCcccCCCCCcEE
Confidence 99999999999999999998632 23579999999999998875 77774311 1258
Q ss_pred ecEEEEeeEEEecC-CCccceeec
Q 041993 354 SRIRLEDVKLTYKN-QPAAASCSH 376 (391)
Q Consensus 354 ~~v~~~nv~v~~~~-~~~~~~c~~ 376 (391)
+||+|+||+.+... .+..+.|+.
T Consensus 320 snI~f~NI~GTs~~~~ai~l~Cs~ 343 (456)
T PLN03003 320 SKVVFSNFIGTSKSEYGVDFRCSE 343 (456)
T ss_pred EeEEEEeEEEEeCccceEEEEeCC
Confidence 99999999987654 334455554
No 18
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=99.80 E-value=2.8e-17 Score=158.21 Aligned_cols=196 Identities=24% Similarity=0.340 Sum_probs=155.3
Q ss_pred CceEEEEeeeeeEEeceeEeCCCccccccccCCCCCCCCCeeEEEEeecceEEEeEEEecCC----ceeEEEeceeeEEE
Q 041993 106 GNWLFFQHVDGVTLNSGILDGQGTALWACKNSGKNCPSGATSMGFSNCNNIAINGLTSLNSQ----MYHVVFNGCNNVKL 181 (391)
Q Consensus 106 ~~~i~~~~~~ni~I~GG~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~n~~----~~~i~~~~~~nv~i 181 (391)
..++.+.+++|+.|+|-++... + .| .+++.+|+|++|++++|.++. ..++++..|+|++|
T Consensus 92 p~~i~~~~~~~~~i~~i~~~ns-p-~w--------------~~~~~~~~nv~i~~i~I~~~~~~~NtDGid~~~s~nv~I 155 (326)
T PF00295_consen 92 PRLIRFNNCKNVTIEGITIRNS-P-FW--------------HIHINDCDNVTISNITINNPANSPNTDGIDIDSSKNVTI 155 (326)
T ss_dssp SESEEEEEEEEEEEESEEEES--S-SE--------------SEEEESEEEEEEESEEEEEGGGCTS--SEEEESEEEEEE
T ss_pred cceeeeeeecceEEEeeEecCC-C-ee--------------EEEEEccCCeEEcceEEEecCCCCCcceEEEEeeeEEEE
Confidence 4679999999999999655422 1 22 478999999999999998754 35899999999999
Q ss_pred EeEEEEcCCCCCCCCceeeeccc-cEEEEeeEEecCCceEEeCC---C-----ceeEEEEeeEEcCC-ceEEEeecCCCC
Q 041993 182 KGVKVLASGNSPNTDGIHVQLSS-DVTILNTRISTGDDCVSIGP---G-----TSNLWIENVACGPG-HGISIGSLGKDL 251 (391)
Q Consensus 182 ~n~~i~~~~~~~~~DGi~~~~s~-nv~I~n~~i~~~dD~i~i~~---~-----~~nv~i~n~~~~~~-~gi~igs~g~~~ 251 (391)
+|+.|.+.+ |+|.+.+.+ ||+|+||.+..+ .++++++ + .+||+|+||++.+. +|++|++.. .
T Consensus 156 ~n~~i~~gD-----D~Iaiks~~~ni~v~n~~~~~g-hGisiGS~~~~~~~~~i~nV~~~n~~i~~t~~gi~iKt~~--~ 227 (326)
T PF00295_consen 156 ENCFIDNGD-----DCIAIKSGSGNILVENCTCSGG-HGISIGSEGSGGSQNDIRNVTFENCTIINTDNGIRIKTWP--G 227 (326)
T ss_dssp ESEEEESSS-----ESEEESSEECEEEEESEEEESS-SEEEEEEESSSSE--EEEEEEEEEEEEESESEEEEEEEET--T
T ss_pred EEeeccccc-----CcccccccccceEEEeEEEecc-ccceeeeccCCccccEEEeEEEEEEEeeccceEEEEEEec--c
Confidence 999999854 688888644 999999999875 5588865 2 48999999999875 699999853 1
Q ss_pred CCCcEEEEEEEeeEEeCCceEEEEEEecCC--------CCeeEEEEEEEEEEEecCC-ccEEEEeeeCCCCCCCCCCCcc
Q 041993 252 NEAGVQNVTVKTVTFTGTQNGLRIKSWGRP--------SNGFARNILFRNAIMKNVQ-NPIIIDQNYCPDNIGCPGQVSG 322 (391)
Q Consensus 252 ~~~~i~nI~i~n~~~~~~~~gi~i~~~~~~--------~~g~i~nI~~~ni~~~~~~-~~i~i~~~~~~~~~~~~~~~~~ 322 (391)
..+.++||+|+|++|.+...++.|...+.. ....++||+|+|++..... .++.+... +.
T Consensus 228 ~~G~v~nI~f~ni~~~~v~~pi~i~~~y~~~~~~~~~~~~~~i~nI~~~nitg~~~~~~~i~i~~~------------~~ 295 (326)
T PF00295_consen 228 GGGYVSNITFENITMENVKYPIFIDQDYRDGGPCGKPPSGVSISNITFRNITGTSAGSSAISIDCS------------PG 295 (326)
T ss_dssp TSEEEEEEEEEEEEEEEESEEEEEEEEECTTEESSCSSSSSEEEEEEEEEEEEEESTSEEEEEE-B------------TT
T ss_pred cceEEeceEEEEEEecCCceEEEEEeccccccccCcccCCceEEEEEEEeeEEEeccceEEEEEEC------------Cc
Confidence 246799999999999999999988764331 2247999999999998776 56666532 22
Q ss_pred eEEEeEEEEeEEEee
Q 041993 323 VKISDVTYQDVHGTS 337 (391)
Q Consensus 323 ~~i~nI~~~ni~~~~ 337 (391)
.+++||+|+|+.++.
T Consensus 296 ~~~~ni~f~nv~i~~ 310 (326)
T PF00295_consen 296 SPCSNITFENVNITG 310 (326)
T ss_dssp SSEEEEEEEEEEEES
T ss_pred CcEEeEEEEeEEEEc
Confidence 369999999999988
No 19
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=99.75 E-value=1.1e-15 Score=145.98 Aligned_cols=197 Identities=22% Similarity=0.320 Sum_probs=137.4
Q ss_pred HHHHHHHHcCCCCCcEEEEcCCeEEE-eeeeeeCCccCccEEEEEccEEEeccCccccCCCCceEEEEeeeeeEEeceeE
Q 041993 46 FLSAWANACGSPRAATIYVPPGRFFL-RNVAFQGPCKNNRITIRIDGTLVAPSDYRVIGNAGNWLFFQHVDGVTLNSGIL 124 (391)
Q Consensus 46 iq~Ai~~a~~~~~g~~v~ip~G~Y~~-~~~~l~~~~~s~~~~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~ni~I~GG~i 124 (391)
||+|+++| +.|++|.||+|+|.+ .++.+.. + +++|..+|. +. -+|
T Consensus 1 iQ~Ai~~A---~~GDtI~l~~G~Y~~~~~l~I~~---~-~Iti~G~g~----------------------~~-----tvi 46 (314)
T TIGR03805 1 LQEALIAA---QPGDTIVLPEGVFQFDRTLSLDA---D-GVTIRGAGM----------------------DE-----TIL 46 (314)
T ss_pred CHhHHhhC---CCCCEEEECCCEEEcceeEEEeC---C-CeEEEecCC----------------------Cc-----cEE
Confidence 69999876 569999999999986 4566641 3 566655431 00 123
Q ss_pred eCCCccccccccCCCCCCCCCeeEEEEeecceEEEeEEEecCCceeEEEeceeeEEEEeEEEEcCCC---CCCCCceeee
Q 041993 125 DGQGTALWACKNSGKNCPSGATSMGFSNCNNIAINGLTSLNSQMYHVVFNGCNNVKLKGVKVLASGN---SPNTDGIHVQ 201 (391)
Q Consensus 125 dg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~n~~~~~i~~~~~~nv~i~n~~i~~~~~---~~~~DGi~~~ 201 (391)
++.++. .....+ ...+++++|+++++.++..+++.+..|++++|+++++..... ....+||.++
T Consensus 47 d~~~~~------------~~~~~i-~v~a~~VtI~~ltI~~~~~~GI~v~~s~~i~I~n~~i~~~~~~~~~~~~~GI~~~ 113 (314)
T TIGR03805 47 DFSGQV------------GGAEGL-LVTSDDVTLSDLAVENTKGDGVKVKGSDGIIIRRLRVEWTGGPKSSNGAYGIYPV 113 (314)
T ss_pred ecccCC------------CCCceE-EEEeCCeEEEeeEEEcCCCCeEEEeCCCCEEEEeeEEEeccCccccCCcceEEEe
Confidence 333320 012233 346889999999998888888888889999999998874321 1246789998
Q ss_pred ccccEEEEeeEEecC-CceEEeCCCceeEEEEeeEEcCC-ceEEEeecCCCCCCCcEEEEEEEeeEEeCCceEEEEEEec
Q 041993 202 LSSDVTILNTRISTG-DDCVSIGPGTSNLWIENVACGPG-HGISIGSLGKDLNEAGVQNVTVKTVTFTGTQNGLRIKSWG 279 (391)
Q Consensus 202 ~s~nv~I~n~~i~~~-dD~i~i~~~~~nv~i~n~~~~~~-~gi~igs~g~~~~~~~i~nI~i~n~~~~~~~~gi~i~~~~ 279 (391)
.|++++|++|+++.. |++|.++. +++++|+||+++.. .|+.+.. ..++.|+++.+.+...|+.+...+
T Consensus 114 ~s~~v~I~~n~i~g~~d~GIyv~~-s~~~~v~nN~~~~n~~GI~i~~---------S~~~~v~~N~~~~N~~Gi~v~~~p 183 (314)
T TIGR03805 114 ESTNVLVEDSYVRGASDAGIYVGQ-SQNIVVRNNVAEENVAGIEIEN---------SQNADVYNNIATNNTGGILVFDLP 183 (314)
T ss_pred ccCCEEEECCEEECCCcccEEECC-CCCeEEECCEEccCcceEEEEe---------cCCcEEECCEEeccceeEEEeecC
Confidence 899999999999884 55888876 88999999998865 4777632 256788888888887888886554
Q ss_pred CCCCeeEEEEEEEEEEEecC
Q 041993 280 RPSNGFARNILFRNAIMKNV 299 (391)
Q Consensus 280 ~~~~g~i~nI~~~ni~~~~~ 299 (391)
+.....-+++++++.++.+.
T Consensus 184 ~~~~~~s~~~~v~~N~i~~n 203 (314)
T TIGR03805 184 GLPQPGGSNVRVFDNIIFDN 203 (314)
T ss_pred CCCcCCccceEEECCEEECC
Confidence 42223346777777777654
No 20
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=99.34 E-value=2.7e-11 Score=121.35 Aligned_cols=154 Identities=24% Similarity=0.316 Sum_probs=127.3
Q ss_pred CceeEEEeceeeEEEEeEEEEcCCCCCCCCceeeeccccEEEEeeEEecCC----ceEEeCCCceeEEEEeeEEcCCc-e
Q 041993 167 QMYHVVFNGCNNVKLKGVKVLASGNSPNTDGIHVQLSSDVTILNTRISTGD----DCVSIGPGTSNLWIENVACGPGH-G 241 (391)
Q Consensus 167 ~~~~i~~~~~~nv~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~d----D~i~i~~~~~nv~i~n~~~~~~~-g 241 (391)
+...+.+..|+||++++++|.+++. .++|+..|+|++++|.++.+.+ |++.+.+ |+|++|++|+|..++ .
T Consensus 237 rp~~~~l~~c~NV~~~g~~i~ns~~----~~~h~~~~~nl~~~nl~I~~~~~~NtDG~d~~s-c~NvlI~~~~fdtgDD~ 311 (542)
T COG5434 237 RPRTVVLKGCRNVLLEGLNIKNSPL----WTVHPVDCDNLTFRNLTIDANRFDNTDGFDPGS-CSNVLIEGCRFDTGDDC 311 (542)
T ss_pred CCceEEEeccceEEEeeeEecCCCc----EEEeeecccCceecceEEECCCCCCCCcccccc-ceeEEEeccEEecCCce
Confidence 4457889999999999999999754 5789999999999999999854 4888888 999999999999875 6
Q ss_pred EEEeecCCCC---CCCcEEEEEEEeeEEeCCceEEEEEEecCCCCeeEEEEEEEEEEEecCCccEEEEeeeCCCCCCCCC
Q 041993 242 ISIGSLGKDL---NEAGVQNVTVKTVTFTGTQNGLRIKSWGRPSNGFARNILFRNAIMKNVQNPIIIDQNYCPDNIGCPG 318 (391)
Q Consensus 242 i~igs~g~~~---~~~~i~nI~i~n~~~~~~~~gi~i~~~~~~~~g~i~nI~~~ni~~~~~~~~i~i~~~~~~~~~~~~~ 318 (391)
+++++..... .....++|.|+||.|.....++.+.++ .++.++||+++|+.|.+..++++|++...
T Consensus 312 I~iksg~~~~~~~~~~~~~~i~i~~c~~~~ghG~~v~Gse---~~ggv~ni~ved~~~~~~d~GLRikt~~~-------- 380 (542)
T COG5434 312 IAIKSGAGLDGKKGYGPSRNIVIRNCYFSSGHGGLVLGSE---MGGGVQNITVEDCVMDNTDRGLRIKTNDG-------- 380 (542)
T ss_pred EEeecccCCcccccccccccEEEecceecccccceEeeee---cCCceeEEEEEeeeeccCcceeeeeeecc--------
Confidence 9998753322 123479999999999987777777777 56889999999999999999999998633
Q ss_pred CCcceEEEeEEEEeEEEeeC
Q 041993 319 QVSGVKISDVTYQDVHGTSA 338 (391)
Q Consensus 319 ~~~~~~i~nI~~~ni~~~~~ 338 (391)
.++.++||+|+++.....
T Consensus 381 --~gG~v~nI~~~~~~~~nv 398 (542)
T COG5434 381 --RGGGVRNIVFEDNKMRNV 398 (542)
T ss_pred --cceeEEEEEEecccccCc
Confidence 225799999988876655
No 21
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional
Probab=99.22 E-value=1.6e-09 Score=98.40 Aligned_cols=227 Identities=20% Similarity=0.302 Sum_probs=139.0
Q ss_pred cCCCCCeEEeecCCccCCCCcccHHHHHHHHHHHcCCCCCcEEEEcCCeE--EE-eeeeeeCCccCccEEEEEccEEEec
Q 041993 20 SLAAPPSYNVVSFGAKPDGRTDSTKAFLSAWANACGSPRAATIYVPPGRF--FL-RNVAFQGPCKNNRITIRIDGTLVAP 96 (391)
Q Consensus 20 ~~~~~~~~~v~d~Ga~~dg~~d~t~aiq~Ai~~a~~~~~g~~v~ip~G~Y--~~-~~~~l~~~~~s~~~~l~~~G~l~~~ 96 (391)
+....+++++.||-. .|.-++|.+|+.+ +.||.+|+|-- .+ ..+.++ . +.||++.|.|+..
T Consensus 28 a~~~~~~vni~dy~~-----~dwiasfkqaf~e------~qtvvvpagl~cenint~ifip----~-gktl~v~g~l~gn 91 (464)
T PRK10123 28 ALPARQSVNINDYNP-----HDWIASFKQAFSE------GQTVVVPAGLVCDNINTGIFIP----P-GKTLHILGSLRGN 91 (464)
T ss_pred hcCCCceeehhhcCc-----ccHHHHHHHHhcc------CcEEEecCccEecccccceEeC----C-CCeEEEEEEeecC
Confidence 345667999999986 6899999999954 58999999952 23 356776 4 8999999988764
Q ss_pred cCccccCCCCceEEEEeeeeeEEec---eeEeCCCccccccccCCCCCCCCCeeEEEEeecceEEEeEEEecC-CceeEE
Q 041993 97 SDYRVIGNAGNWLFFQHVDGVTLNS---GILDGQGTALWACKNSGKNCPSGATSMGFSNCNNIAINGLTSLNS-QMYHVV 172 (391)
Q Consensus 97 ~~~~~~~~~~~~i~~~~~~ni~I~G---G~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~n~-~~~~i~ 172 (391)
.. +.++.-+|++ +.| |.+. . ...-...+.+.|+++.+..- |...+.
T Consensus 92 gr-------grfvlqdg~q---v~ge~~g~~h-------------------n-itldvrgsdc~ikgiamsgfgpvtqiy 141 (464)
T PRK10123 92 GR-------GRFVLQDGSQ---VTGEEGGSMH-------------------N-ITLDVRGSDCTIKGLAMSGFGPVTQIY 141 (464)
T ss_pred Cc-------eeEEEecCCE---eecCCCceee-------------------e-EEEeeccCceEEeeeeecccCceeEEE
Confidence 33 3344433333 333 2110 0 11112344566666666432 223344
Q ss_pred Ee-----ceeeEEEEeEEEEcCCCCCCCCceeeeccccEEEEeeEEec-CCceEEeCCC--ceeEE-----EEeeEEcCC
Q 041993 173 FN-----GCNNVKLKGVKVLASGNSPNTDGIHVQLSSDVTILNTRIST-GDDCVSIGPG--TSNLW-----IENVACGPG 239 (391)
Q Consensus 173 ~~-----~~~nv~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~-~dD~i~i~~~--~~nv~-----i~n~~~~~~ 239 (391)
+- -.+|++|+++++....++--..|+|-.- ..++|+||+|.. +.|+|..... .+|++ |+++.|.++
T Consensus 142 iggk~prvmrnl~id~itv~~anyailrqgfhnq~-dgaritn~rfs~lqgdaiewnvaindr~ilisdhvie~inctng 220 (464)
T PRK10123 142 IGGKNKRVMRNLTIDNLTVSHANYAILRQGFHNQI-IGANITNCKFSDLQGDAIEWNVAINDRDILISDHVIERINCTNG 220 (464)
T ss_pred EcCCCchhhhccEEccEEEeeccHHHHhhhhhhcc-ccceeeccccccccCceEEEEEEecccceeeehheheeecccCC
Confidence 33 2368888888887755443345666543 678899999987 5677655432 24444 455556554
Q ss_pred ---ceEEEeecCC-----CCCCCcEEEEEEEeeEEeCCceEEEEEEecCCCCeeEEEEEEEEEEE
Q 041993 240 ---HGISIGSLGK-----DLNEAGVQNVTVKTVTFTGTQNGLRIKSWGRPSNGFARNILFRNAIM 296 (391)
Q Consensus 240 ---~gi~igs~g~-----~~~~~~i~nI~i~n~~~~~~~~gi~i~~~~~~~~g~i~nI~~~ni~~ 296 (391)
+||.||..|. +++...+.|..+.|++-.+++.-+++..- ..-.++||.-+||+-
T Consensus 221 kinwgigiglagstydn~ype~q~vknfvvanitgs~crqlvhveng---khfvirnvkaknitp 282 (464)
T PRK10123 221 KINWGIGIGLAGSTYDNNYPEDQAVKNFVVANITGSDCRQLIHVENG---KHFVIRNIKAKNITP 282 (464)
T ss_pred cccceeeeeeccccccCCCchhhhhhhEEEEeccCcChhheEEecCC---cEEEEEeeeccccCC
Confidence 5888877665 33445678888888887777766655421 223445555555443
No 22
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=99.10 E-value=4.3e-08 Score=93.90 Aligned_cols=175 Identities=18% Similarity=0.198 Sum_probs=128.8
Q ss_pred EEEEeeeeeEEeceeEeCCCccccccccCCCCCCCCCeeEEEEeecceEEEeEEEe-------cCCceeEEEeceeeEEE
Q 041993 109 LFFQHVDGVTLNSGILDGQGTALWACKNSGKNCPSGATSMGFSNCNNIAINGLTSL-------NSQMYHVVFNGCNNVKL 181 (391)
Q Consensus 109 i~~~~~~ni~I~GG~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~-------n~~~~~i~~~~~~nv~i 181 (391)
+.. .+++|+|++-++...+ ..+|.+..|++++|+++++. ....+++.+..|++++|
T Consensus 58 i~v-~a~~VtI~~ltI~~~~----------------~~GI~v~~s~~i~I~n~~i~~~~~~~~~~~~~GI~~~~s~~v~I 120 (314)
T TIGR03805 58 LLV-TSDDVTLSDLAVENTK----------------GDGVKVKGSDGIIIRRLRVEWTGGPKSSNGAYGIYPVESTNVLV 120 (314)
T ss_pred EEE-EeCCeEEEeeEEEcCC----------------CCeEEEeCCCCEEEEeeEEEeccCccccCCcceEEEeccCCEEE
Confidence 444 3799999996554321 12688899999999999996 23468999999999999
Q ss_pred EeEEEEcCCCCCCCCceeeeccccEEEEeeEEecCCceEEeCCCceeEEEEeeEEcCC-ceEEEeecCCCCCCCcEEEEE
Q 041993 182 KGVKVLASGNSPNTDGIHVQLSSDVTILNTRISTGDDCVSIGPGTSNLWIENVACGPG-HGISIGSLGKDLNEAGVQNVT 260 (391)
Q Consensus 182 ~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~nv~i~n~~~~~~-~gi~igs~g~~~~~~~i~nI~ 260 (391)
+++++.... .+||.+..|++++|++++++....+|.+.. +.++.|+++.+... .|+.+...... .....++++
T Consensus 121 ~~n~i~g~~----d~GIyv~~s~~~~v~nN~~~~n~~GI~i~~-S~~~~v~~N~~~~N~~Gi~v~~~p~~-~~~~s~~~~ 194 (314)
T TIGR03805 121 EDSYVRGAS----DAGIYVGQSQNIVVRNNVAEENVAGIEIEN-SQNADVYNNIATNNTGGILVFDLPGL-PQPGGSNVR 194 (314)
T ss_pred ECCEEECCC----cccEEECCCCCeEEECCEEccCcceEEEEe-cCCcEEECCEEeccceeEEEeecCCC-CcCCccceE
Confidence 999998743 259999999999999999999888998876 88999999999864 57877443111 123468899
Q ss_pred EEeeEEeCCce-EE-----EEEEecCCCCeeE----EEEEEEEEEEecCC-ccEEEEe
Q 041993 261 VKTVTFTGTQN-GL-----RIKSWGRPSNGFA----RNILFRNAIMKNVQ-NPIIIDQ 307 (391)
Q Consensus 261 i~n~~~~~~~~-gi-----~i~~~~~~~~g~i----~nI~~~ni~~~~~~-~~i~i~~ 307 (391)
|+++.+.+... .+ .+...+. +.|.+ +++.|+|.++.+.. .++.+..
T Consensus 195 v~~N~i~~n~~~n~~~~gn~v~~~~~-g~Gi~i~~~~~v~I~~N~i~~n~~~~i~~~~ 251 (314)
T TIGR03805 195 VFDNIIFDNNTPNFAPAGSIVASVPA-GTGVVVMANRDVEIFGNVISNNDTANVLISS 251 (314)
T ss_pred EECCEEECCCCCCCcccCCceecCCC-CcEEEEEcccceEEECCEEeCCcceeEEEEe
Confidence 99999987632 11 1111111 33433 88999999998876 4666654
No 23
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=99.04 E-value=3.7e-09 Score=95.20 Aligned_cols=134 Identities=19% Similarity=0.274 Sum_probs=85.3
Q ss_pred eeeeeEEeceeEeCCCccccccccCCCCCCCCCeeEEEEeecceEEEeEEEecCCceeEEEeceeeEEEEeEEEEcCCCC
Q 041993 113 HVDGVTLNSGILDGQGTALWACKNSGKNCPSGATSMGFSNCNNIAINGLTSLNSQMYHVVFNGCNNVKLKGVKVLASGNS 192 (391)
Q Consensus 113 ~~~ni~I~GG~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~n~~~~~i~~~~~~nv~i~n~~i~~~~~~ 192 (391)
.++++++++-.+.-..+..|.+..-.-.......-..+.+++|+.++++.+..- ..+++++|+.|+|.++.+.+-
T Consensus 96 ~~~~i~L~nv~~~~A~Et~W~c~~i~l~nv~~~gdYf~m~s~ni~id~l~~~Gn----Y~Fq~~kNvei~ns~l~sKDA- 170 (277)
T PF12541_consen 96 ECSNITLENVDIPDADETLWNCRGIKLKNVQANGDYFFMNSENIYIDNLVLDGN----YSFQYCKNVEIHNSKLDSKDA- 170 (277)
T ss_pred cccCcEEEeeEeCCCcccCEEeCCeEEEeEEEeceEeeeeccceEEeceEEeCC----EEeeceeeEEEEccEEecccc-
Confidence 577888887666445556676542210000111123455677777777777433 456777888888888877532
Q ss_pred CCCCceeeeccccEEEEeeEEecCCceEEeCCCceeEEEEeeEEcCCceEEEeecCCCCCCCcEEEEEEEeeEEeCCceE
Q 041993 193 PNTDGIHVQLSSDVTILNTRISTGDDCVSIGPGTSNLWIENVACGPGHGISIGSLGKDLNEAGVQNVTVKTVTFTGTQNG 272 (391)
Q Consensus 193 ~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~nv~i~n~~~~~~~gi~igs~g~~~~~~~i~nI~i~n~~~~~~~~g 272 (391)
+|.|+||+|.|+.+.. -.+.-.++|+++.||++.+..|+. +++|++++||+|.+++-+
T Consensus 171 -------FWn~eNVtVyDS~i~G----EYLgW~SkNltliNC~I~g~QpLC-----------Y~~~L~l~nC~~~~tdla 228 (277)
T PF12541_consen 171 -------FWNCENVTVYDSVING----EYLGWNSKNLTLINCTIEGTQPLC-----------YCDNLVLENCTMIDTDLA 228 (277)
T ss_pred -------cccCCceEEEcceEee----eEEEEEcCCeEEEEeEEeccCccE-----------eecceEEeCcEeecceee
Confidence 6778888888888874 223333688888888887666654 457888888888877555
Q ss_pred E
Q 041993 273 L 273 (391)
Q Consensus 273 i 273 (391)
+
T Consensus 229 F 229 (277)
T PF12541_consen 229 F 229 (277)
T ss_pred e
Confidence 4
No 24
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=98.81 E-value=6.6e-08 Score=87.25 Aligned_cols=126 Identities=21% Similarity=0.304 Sum_probs=83.2
Q ss_pred EEeecceEEEeEEEecCCceeEEEeceeeEEEEeEEEEcCCCC-----CCCCce------eeeccccEEEEeeEEecCCc
Q 041993 150 FSNCNNIAINGLTSLNSQMYHVVFNGCNNVKLKGVKVLASGNS-----PNTDGI------HVQLSSDVTILNTRISTGDD 218 (391)
Q Consensus 150 ~~~~~nv~i~~v~i~n~~~~~i~~~~~~nv~i~n~~i~~~~~~-----~~~DGi------~~~~s~nv~I~n~~i~~~dD 218 (391)
|+.|++++++++++-+++-. +..|++++++|+.+.+...+ -.-|++ -+++++||.|+|+++.+.|-
T Consensus 94 fR~~~~i~L~nv~~~~A~Et---~W~c~~i~l~nv~~~gdYf~m~s~ni~id~l~~~GnY~Fq~~kNvei~ns~l~sKDA 170 (277)
T PF12541_consen 94 FRECSNITLENVDIPDADET---LWNCRGIKLKNVQANGDYFFMNSENIYIDNLVLDGNYSFQYCKNVEIHNSKLDSKDA 170 (277)
T ss_pred hhcccCcEEEeeEeCCCccc---CEEeCCeEEEeEEEeceEeeeeccceEEeceEEeCCEEeeceeeEEEEccEEecccc
Confidence 56788888888888776643 33567777777777432111 012222 24567888888888887652
Q ss_pred eEEeCCCceeEEEEeeEEcCCceEEEeecCCCCCCCcEEEEEEEeeEEeCCceEEEEEEecCCCCeeEEEEEEEEEEEec
Q 041993 219 CVSIGPGTSNLWIENVACGPGHGISIGSLGKDLNEAGVQNVTVKTVTFTGTQNGLRIKSWGRPSNGFARNILFRNAIMKN 298 (391)
Q Consensus 219 ~i~i~~~~~nv~i~n~~~~~~~gi~igs~g~~~~~~~i~nI~i~n~~~~~~~~gi~i~~~~~~~~g~i~nI~~~ni~~~~ 298 (391)
+.. ++||+|.|+.+.+ =.+|.. .+|+++.||++.+.+ +--+++|++++|++|.+
T Consensus 171 ---FWn-~eNVtVyDS~i~G---EYLgW~--------SkNltliNC~I~g~Q-----------pLCY~~~L~l~nC~~~~ 224 (277)
T PF12541_consen 171 ---FWN-CENVTVYDSVING---EYLGWN--------SKNLTLINCTIEGTQ-----------PLCYCDNLVLENCTMID 224 (277)
T ss_pred ---ccc-CCceEEEcceEee---eEEEEE--------cCCeEEEEeEEeccC-----------ccEeecceEEeCcEeec
Confidence 333 7888888888733 222222 378999999987662 34578889999999997
Q ss_pred CCccEE
Q 041993 299 VQNPII 304 (391)
Q Consensus 299 ~~~~i~ 304 (391)
++.++.
T Consensus 225 tdlaFE 230 (277)
T PF12541_consen 225 TDLAFE 230 (277)
T ss_pred ceeeee
Confidence 765543
No 25
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=98.76 E-value=3.2e-06 Score=78.81 Aligned_cols=150 Identities=12% Similarity=0.190 Sum_probs=107.5
Q ss_pred CceEEEEeeeeeEEeceeEeCCCccccccccCCCCCCCCCeeEEEEeecceEEEeEEEecCCceeEEEeceeeEEEEeEE
Q 041993 106 GNWLFFQHVDGVTLNSGILDGQGTALWACKNSGKNCPSGATSMGFSNCNNIAINGLTSLNSQMYHVVFNGCNNVKLKGVK 185 (391)
Q Consensus 106 ~~~i~~~~~~ni~I~GG~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~n~~~~~i~~~~~~nv~i~n~~ 185 (391)
+..+.+. ++++.++|-+..+.|.... ......+.-...+...|+...+... .+++.+..+.++.|++.+
T Consensus 69 G~~vtv~-aP~~~v~Gl~vr~sg~~lp---------~m~agI~v~~~at~A~Vr~N~l~~n-~~Gi~l~~s~d~~i~~n~ 137 (408)
T COG3420 69 GSYVTVA-APDVIVEGLTVRGSGRSLP---------AMDAGIFVGRTATGAVVRHNDLIGN-SFGIYLHGSADVRIEGNT 137 (408)
T ss_pred ccEEEEe-CCCceeeeEEEecCCCCcc---------cccceEEeccCcccceEEccccccc-ceEEEEeccCceEEEeeE
Confidence 4456664 7889999977777765322 1223344555677778888777765 478999999999999999
Q ss_pred EEcCCC---CCCCCceeeeccccEEEEeeEEecCCceEEeCCCceeEEEEeeEEcCCc-eEEEeecCCCCCCCcEEEEEE
Q 041993 186 VLASGN---SPNTDGIHVQLSSDVTILNTRISTGDDCVSIGPGTSNLWIENVACGPGH-GISIGSLGKDLNEAGVQNVTV 261 (391)
Q Consensus 186 i~~~~~---~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~nv~i~n~~~~~~~-gi~igs~g~~~~~~~i~nI~i 261 (391)
|....+ ...++||+++.++.+.|..+.+.-+.|||.... +++-.|+++.+...+ |.-. ....+..+
T Consensus 138 i~G~~~~r~~~rGnGI~vyNa~~a~V~~ndisy~rDgIy~~~-S~~~~~~gnr~~~~RygvHy---------M~t~~s~i 207 (408)
T COG3420 138 IQGLADLRVAERGNGIYVYNAPGALVVGNDISYGRDGIYSDT-SQHNVFKGNRFRDLRYGVHY---------MYTNDSRI 207 (408)
T ss_pred EeeccccchhhccCceEEEcCCCcEEEcCccccccceEEEcc-cccceecccchhheeeeEEE---------EeccCcEe
Confidence 998554 346789999999999999999999999999988 778888888876542 3221 12234556
Q ss_pred EeeEEeCCceEEEEE
Q 041993 262 KTVTFTGTQNGLRIK 276 (391)
Q Consensus 262 ~n~~~~~~~~gi~i~ 276 (391)
+++...++.-|+.+.
T Consensus 208 ~dn~s~~N~vG~ALM 222 (408)
T COG3420 208 SDNSSRDNRVGYALM 222 (408)
T ss_pred ecccccCCcceEEEE
Confidence 666666665565543
No 26
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=98.73 E-value=1.4e-07 Score=80.48 Aligned_cols=140 Identities=26% Similarity=0.333 Sum_probs=97.2
Q ss_pred eEEEEeecceEEEeEEEecCCceeEEEeceeeEEEEeEEEEcCCCCCCCCceeeeccccEEEEeeEEecCCceEEeCCCc
Q 041993 147 SMGFSNCNNIAINGLTSLNSQMYHVVFNGCNNVKLKGVKVLASGNSPNTDGIHVQLSSDVTILNTRISTGDDCVSIGPGT 226 (391)
Q Consensus 147 ~i~~~~~~nv~i~~v~i~n~~~~~i~~~~~~nv~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~ 226 (391)
+|.+....+++|++++|.+...+++.+..+..++|++++|.. ...|+.+....++++++|.+.....++.+. +.
T Consensus 2 Gi~i~~~~~~~i~~~~i~~~~~~gi~~~~~~~~~i~n~~i~~-----~~~gi~~~~~~~~~i~~~~~~~~~~~i~~~-~~ 75 (158)
T PF13229_consen 2 GISINNGSNVTIRNCTISNNGGDGIHVSGSSNITIENCTISN-----GGYGIYVSGGSNVTISNNTISDNGSGIYVS-GS 75 (158)
T ss_dssp CEEETTCEC-EEESEEEESSSSECEEE-SSCESEEES-EEES-----STTSEEEECCES-EEES-EEES-SEEEECC-S-
T ss_pred EEEEECCcCeEEeeeEEEeCCCeEEEEEcCCCeEEECeEEEC-----CCcEEEEecCCCeEEECeEEEEccceEEEE-ec
Confidence 366777888999999999999999999999999999999998 446899998899999999999877677777 48
Q ss_pred eeEEEEeeEEcCC--ceEEEeecCCCCCCCcEEEEEEEeeEEeCCc-eEEEEEEecCCCCeeEEEEEEEEEEEecCC-cc
Q 041993 227 SNLWIENVACGPG--HGISIGSLGKDLNEAGVQNVTVKTVTFTGTQ-NGLRIKSWGRPSNGFARNILFRNAIMKNVQ-NP 302 (391)
Q Consensus 227 ~nv~i~n~~~~~~--~gi~igs~g~~~~~~~i~nI~i~n~~~~~~~-~gi~i~~~~~~~~g~i~nI~~~ni~~~~~~-~~ 302 (391)
.+++|++|.+... .|+.+.. ...+++|+++++.+.. .|+.+.... -.+++++++++.+.. .+
T Consensus 76 ~~~~i~~~~i~~~~~~gi~~~~--------~~~~~~i~~n~~~~~~~~gi~~~~~~------~~~~~i~~n~i~~~~~~g 141 (158)
T PF13229_consen 76 SNITIENNRIENNGDYGIYISN--------SSSNVTIENNTIHNNGGSGIYLEGGS------SPNVTIENNTISNNGGNG 141 (158)
T ss_dssp CS-EEES-EEECSSS-SCE-TC--------EECS-EEES-EEECCTTSSCEEEECC--------S-EEECEEEECESSEE
T ss_pred CCceecCcEEEcCCCccEEEec--------cCCCEEEEeEEEEeCcceeEEEECCC------CCeEEEEEEEEEeCccee
Confidence 8999999999864 2677632 1356889999999876 688776543 234777888887654 55
Q ss_pred EEEE
Q 041993 303 IIID 306 (391)
Q Consensus 303 i~i~ 306 (391)
+.+.
T Consensus 142 i~~~ 145 (158)
T PF13229_consen 142 IYLI 145 (158)
T ss_dssp EE-T
T ss_pred EEEE
Confidence 5443
No 27
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of dextranase (3.2.1.11 from EC) and isopullulanase (3.2.1.57 from EC) which are all members of glycoside hydrolase family 49 (GH49 from CAZY). Dextranase hydrolyses alpha-1,6-glycosidic bonds in dextran polymers.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1X0C_A 1WMR_A 2Z8G_B 1OGM_X 1OGO_X.
Probab=98.67 E-value=1.2e-05 Score=79.73 Aligned_cols=243 Identities=15% Similarity=0.169 Sum_probs=131.9
Q ss_pred CCcEEEEcCCeEEEeeeeeeCCccCccEEEEEccEEEeccCc------cccC----C---CC---ceEE---EEeeeeeE
Q 041993 58 RAATIYVPPGRFFLRNVAFQGPCKNNRITIRIDGTLVAPSDY------RVIG----N---AG---NWLF---FQHVDGVT 118 (391)
Q Consensus 58 ~g~~v~ip~G~Y~~~~~~l~~~~~s~~~~l~~~G~l~~~~~~------~~~~----~---~~---~~i~---~~~~~ni~ 118 (391)
...+|||.||.|.-+.+++.+. ++ ++.+.+.|+|....-. ..|. . .+ .|+. ..+.++..
T Consensus 255 n~~~VYlApGAyVkGAf~~~~~-~~-nv~i~G~GVLSGe~Yvy~A~~~e~y~~~s~A~~~~~~~lkm~~~~~~~g~q~~~ 332 (582)
T PF03718_consen 255 NTKWVYLAPGAYVKGAFEYTDT-QQ-NVKITGRGVLSGEQYVYEADTEESYLHLSGAVKCHRESLKMLWHISANGGQTLT 332 (582)
T ss_dssp T--EEEE-TTEEEES-EEE----SS-EEEEESSSEEE-TTS-TTBBCCCTTSB-SSC---TTTB--SEEECS-SSSEEEE
T ss_pred CccEEEEcCCcEEEEEEEEccC-Cc-eEEEEeeEEEcCcceeEeccCCCCccccccccccchhhhhhhhhhccCCcceEE
Confidence 3579999999999998877621 24 8888888888754211 1121 0 00 2333 34567888
Q ss_pred EeceeEeCCCccccccccCCCCCCCCCeeEEEEeec----ceEEEeEEEecCCce---eEEEeceeeEEEEeEEEEcCCC
Q 041993 119 LNSGILDGQGTALWACKNSGKNCPSGATSMGFSNCN----NIAINGLTSLNSQMY---HVVFNGCNNVKLKGVKVLASGN 191 (391)
Q Consensus 119 I~GG~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~----nv~i~~v~i~n~~~~---~i~~~~~~nv~i~n~~i~~~~~ 191 (391)
+.|-+|... ++|. +.+.+-+ +.+|++.++..+-.| ++.+. ++.+|+||.++.
T Consensus 333 ~~GiTI~~p--P~~S--------------m~l~g~~~~~~~~~i~nyKqVGaW~~qtDGi~ly--~nS~i~dcF~h~--- 391 (582)
T PF03718_consen 333 CEGITINDP--PFHS--------------MDLYGNENDKFSMNISNYKQVGAWYFQTDGIELY--PNSTIRDCFIHV--- 391 (582)
T ss_dssp EES-EEE----SS-S--------------EEEESSSGGGEEEEEEEEEEE---CTT----B----TT-EEEEEEEEE---
T ss_pred EEeeEecCC--Ccce--------------EEecCCccccccceeeceeeeeeEEeccCCcccc--CCCeeeeeEEEe---
Confidence 888666422 2332 4444333 478999999876554 45554 788999999998
Q ss_pred CCCCCceeeeccccEEEEeeEEecCC--ceEEeCC---CceeEEEEeeEEcC----------CceEEEeecCCC------
Q 041993 192 SPNTDGIHVQLSSDVTILNTRISTGD--DCVSIGP---GTSNLWIENVACGP----------GHGISIGSLGKD------ 250 (391)
Q Consensus 192 ~~~~DGi~~~~s~nv~I~n~~i~~~d--D~i~i~~---~~~nv~i~n~~~~~----------~~gi~igs~g~~------ 250 (391)
+.|+|.+.. +++.|++|.++... -.+-++. ..+||.|+|+.+-. ..+|-. +...+
T Consensus 392 --nDD~iKlYh-S~v~v~~~ViWk~~Ngpiiq~GW~pr~isnv~veni~IIh~r~~~~~~~~n~~I~~-ss~~y~~~~s~ 467 (582)
T PF03718_consen 392 --NDDAIKLYH-SNVSVSNTVIWKNENGPIIQWGWTPRNISNVSVENIDIIHNRWIWHNNYVNTAILG-SSPFYDDMAST 467 (582)
T ss_dssp --SS-SEE--S-TTEEEEEEEEEE-SSS-SEE--CS---EEEEEEEEEEEEE---SSGGCTTT-ECEE-E--BTTS-SSS
T ss_pred --cCchhheee-cCcceeeeEEEecCCCCeEEeeccccccCceEEeeeEEEeeeeecccCCCCceeEe-cccccccccCC
Confidence 557898887 79999999998732 2233332 26899999998732 123322 22111
Q ss_pred --CC-CCcEEEEEEEeeEEeCCc-eEEEEEEecCCCCeeEEEEEEEEEEEecC--C---cc-EEEEeeeCCCCCCCCCCC
Q 041993 251 --LN-EAGVQNVTVKTVTFTGTQ-NGLRIKSWGRPSNGFARNILFRNAIMKNV--Q---NP-IIIDQNYCPDNIGCPGQV 320 (391)
Q Consensus 251 --~~-~~~i~nI~i~n~~~~~~~-~gi~i~~~~~~~~g~i~nI~~~ni~~~~~--~---~~-i~i~~~~~~~~~~~~~~~ 320 (391)
.+ ...+++++|+|+++++.- ..++|... .-.+|+.++|+.++.- . .. -.++..+.... .
T Consensus 468 ~~adp~~ti~~~~~~nv~~EG~~~~l~ri~pl-----qn~~nl~ikN~~~~~w~~~~~~~~~s~~k~~~~~~~------~ 536 (582)
T PF03718_consen 468 KTADPSTTIRNMTFSNVRCEGMCPCLFRIYPL-----QNYDNLVIKNVHFESWNGLDITSQVSGLKAYYNMAN------N 536 (582)
T ss_dssp --BEEEEEEEEEEEEEEEEECCE-ECEEE--S-----EEEEEEEEEEEEECEET-CGCSTT-EEE---CCTTT-------
T ss_pred CCCCcccceeeEEEEeEEEecccceeEEEeec-----CCCcceEEEEeecccccCcccccceeeccccccccc------c
Confidence 11 123689999999999964 45678743 4577888888888732 1 11 22333322211 1
Q ss_pred cceEEEeEEEEeEEEeeC
Q 041993 321 SGVKISDVTYQDVHGTSA 338 (391)
Q Consensus 321 ~~~~i~nI~~~ni~~~~~ 338 (391)
......+|.|+|.++-+.
T Consensus 537 ~~~~~~gi~i~N~tVgg~ 554 (582)
T PF03718_consen 537 KQNDTMGIIIENWTVGGE 554 (582)
T ss_dssp -B--EEEEEEEEEEETTE
T ss_pred ccccccceEEEeEEECCE
Confidence 134578888888886544
No 28
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=98.65 E-value=3.8e-06 Score=77.31 Aligned_cols=138 Identities=21% Similarity=0.239 Sum_probs=84.7
Q ss_pred EEEEEccEEEeccCccccCCCCceEEEEeeeeeEEec-e---eEeCCCccccccccCCCCCCCCCeeEEEEeecceEEEe
Q 041993 85 ITIRIDGTLVAPSDYRVIGNAGNWLFFQHVDGVTLNS-G---ILDGQGTALWACKNSGKNCPSGATSMGFSNCNNIAING 160 (391)
Q Consensus 85 ~~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~ni~I~G-G---~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~i~~ 160 (391)
+.|.+.|+|..+. ++ ...+.+..+.|.+|.| | ++.|- .+.++...|+.|++
T Consensus 77 ~ii~v~Gti~~s~-ps-----~~k~~iki~sNkTivG~g~~a~~~g~-------------------gl~i~~a~NVIirN 131 (345)
T COG3866 77 VIIVVKGTITAST-PS-----DKKITIKIGSNKTIVGSGADATLVGG-------------------GLKIRDAGNVIIRN 131 (345)
T ss_pred EEEEEcceEeccC-CC-----CceEEEeeccccEEEeeccccEEEec-------------------eEEEEeCCcEEEEe
Confidence 4677788887652 11 1247777888999988 3 44322 23444455555555
Q ss_pred EEEecCCceeEEEeceeeEEEEeEEEEcCCCCCCCCceee-eccccEEEEeeEEec---------CCceEEeCCCceeEE
Q 041993 161 LTSLNSQMYHVVFNGCNNVKLKGVKVLASGNSPNTDGIHV-QLSSDVTILNTRIST---------GDDCVSIGPGTSNLW 230 (391)
Q Consensus 161 v~i~n~~~~~i~~~~~~nv~i~n~~i~~~~~~~~~DGi~~-~~s~nv~I~n~~i~~---------~dD~i~i~~~~~nv~ 230 (391)
++|...+.| + ++-|+|.+ ..++|++|++|+|.. +|..+.++.++.+|+
T Consensus 132 ltf~~~~~~---------------------d-~~~D~Isi~~~~~nIWIDH~tf~~~s~~~~~~h~DGl~Dik~~AnyIT 189 (345)
T COG3866 132 LTFEGFYQG---------------------D-PNYDAISIYDDGHNIWIDHNTFSGGSYNASGSHGDGLVDIKKDANYIT 189 (345)
T ss_pred eEEEeeccC---------------------C-CCCCcEEeccCCeEEEEEeeEeccccccccccCCCccEEeccCCcEEE
Confidence 555433311 1 23467777 567888888888875 355577777788888
Q ss_pred EEeeEEcCCc-eEEEeecCCCCCCCcEEEEEEEeeEEeCC
Q 041993 231 IENVACGPGH-GISIGSLGKDLNEAGVQNVTVKTVTFTGT 269 (391)
Q Consensus 231 i~n~~~~~~~-gi~igs~g~~~~~~~i~nI~i~n~~~~~~ 269 (391)
|.+|++...+ +.-+|+.......++-.+||+.++.+.+.
T Consensus 190 iS~n~fhdh~Kssl~G~sD~~~~~~~~~kvT~hhNyFkn~ 229 (345)
T COG3866 190 ISYNKFHDHDKSSLLGSSDSSNYDDGKYKVTIHHNYFKNL 229 (345)
T ss_pred EEeeeeecCCeeeeeccCCcccccCCceeEEEeccccccc
Confidence 8888887643 56666643322224456788888888775
No 29
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=98.60 E-value=4.1e-06 Score=81.94 Aligned_cols=146 Identities=18% Similarity=0.203 Sum_probs=94.3
Q ss_pred eEEEEeecceEEEeEEEecCC------ceeEEEeceeeEEEEeEEEEcCCCCCCCCceeeeccccEEEEeeEEec-CCce
Q 041993 147 SMGFSNCNNIAINGLTSLNSQ------MYHVVFNGCNNVKLKGVKVLASGNSPNTDGIHVQLSSDVTILNTRIST-GDDC 219 (391)
Q Consensus 147 ~i~~~~~~nv~i~~v~i~n~~------~~~i~~~~~~nv~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~-~dD~ 219 (391)
.+.-...++++|+|++|.++. ...+.+..|++++|++++|..+. .-||.+..|+ ..|.++.+.. .+..
T Consensus 108 lIiai~A~nVTIsGLtIdGsG~dl~~rdAgI~v~~a~~v~Iedn~L~gsg----~FGI~L~~~~-~~I~~N~I~g~~~~~ 182 (455)
T TIGR03808 108 LLSSEGADGIGLSGLTLDGGGIPLPQRRGLIHCQGGRDVRITDCEITGSG----GNGIWLETVS-GDISGNTITQIAVTA 182 (455)
T ss_pred EEEEecCCCeEEEeeEEEeCCCcccCCCCEEEEccCCceEEEeeEEEcCC----cceEEEEcCc-ceEecceEeccccce
Confidence 466778999999999998765 34688899999999999999853 1366666666 5555555554 3444
Q ss_pred EEeCCCceeEEEEeeEEcCC--ceEEEeec------------------------CCCCCC---CcEEEEEEEeeEEeCCc
Q 041993 220 VSIGPGTSNLWIENVACGPG--HGISIGSL------------------------GKDLNE---AGVQNVTVKTVTFTGTQ 270 (391)
Q Consensus 220 i~i~~~~~nv~i~n~~~~~~--~gi~igs~------------------------g~~~~~---~~i~nI~i~n~~~~~~~ 270 (391)
|.+.. +++++|+++++... .||.+--. +++... -...+++|+++++.+++
T Consensus 183 I~lw~-S~g~~V~~N~I~g~RD~gi~i~r~~~~~dg~~v~~n~i~~i~a~~gg~~~~GNGI~~~~a~~v~V~gN~I~~~r 261 (455)
T TIGR03808 183 IVSFD-ALGLIVARNTIIGANDNGIEILRSAIGDDGTIVTDNRIEDIKAGPGGSGQYGNAINAFRAGNVIVRGNRIRNCD 261 (455)
T ss_pred EEEec-cCCCEEECCEEEccCCCCeEEEEeeecCCcceeeccccccccccCCCcCCccccEEEEccCCeEEECCEEeccc
Confidence 55444 66666666666543 23444311 111100 12356788888888887
Q ss_pred -eEEEEEEecCCCCeeEEEEEEEEEEEecCCc-cEEEE
Q 041993 271 -NGLRIKSWGRPSNGFARNILFRNAIMKNVQN-PIIID 306 (391)
Q Consensus 271 -~gi~i~~~~~~~~g~i~nI~~~ni~~~~~~~-~i~i~ 306 (391)
.||++.+. +|+.|++.++++..+ +++..
T Consensus 262 ~dgI~~nss--------s~~~i~~N~~~~~R~~alhym 291 (455)
T TIGR03808 262 YSAVRGNSA--------SNIQITGNSVSDVREVALYSE 291 (455)
T ss_pred cceEEEEcc--------cCcEEECcEeeeeeeeEEEEE
Confidence 78877644 447777777776665 55544
No 30
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=98.50 E-value=1.7e-06 Score=73.70 Aligned_cols=139 Identities=27% Similarity=0.361 Sum_probs=94.3
Q ss_pred EEEEeeeeeEEeceeEeCCCccccccccCCCCCCCCCeeEEEEeecceEEEeEEEecCCceeEEEeceeeEEEEeEEEEc
Q 041993 109 LFFQHVDGVTLNSGILDGQGTALWACKNSGKNCPSGATSMGFSNCNNIAINGLTSLNSQMYHVVFNGCNNVKLKGVKVLA 188 (391)
Q Consensus 109 i~~~~~~ni~I~GG~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~n~~~~~i~~~~~~nv~i~n~~i~~ 188 (391)
|.+.+..+++|.+-+|...+ ..+|.+..+..++|++.++.+ ...++.+....+++++++.+..
T Consensus 3 i~i~~~~~~~i~~~~i~~~~----------------~~gi~~~~~~~~~i~n~~i~~-~~~gi~~~~~~~~~i~~~~~~~ 65 (158)
T PF13229_consen 3 ISINNGSNVTIRNCTISNNG----------------GDGIHVSGSSNITIENCTISN-GGYGIYVSGGSNVTISNNTISD 65 (158)
T ss_dssp EEETTCEC-EEESEEEESSS----------------SECEEE-SSCESEEES-EEES-STTSEEEECCES-EEES-EEES
T ss_pred EEEECCcCeEEeeeEEEeCC----------------CeEEEEEcCCCeEEECeEEEC-CCcEEEEecCCCeEEECeEEEE
Confidence 34445566777776665432 336888889999999999999 7788999999999999999998
Q ss_pred CCCCCCCCceeeeccccEEEEeeEEecCC-ceEEeCCCceeEEEEeeEEcCC--ceEEEeecCCCCCCCcEEEEEEEeeE
Q 041993 189 SGNSPNTDGIHVQLSSDVTILNTRISTGD-DCVSIGPGTSNLWIENVACGPG--HGISIGSLGKDLNEAGVQNVTVKTVT 265 (391)
Q Consensus 189 ~~~~~~~DGi~~~~s~nv~I~n~~i~~~d-D~i~i~~~~~nv~i~n~~~~~~--~gi~igs~g~~~~~~~i~nI~i~n~~ 265 (391)
.. .|+.+..+.+++|++|.+.... .++.+....++++|++|++... .|+.+... .-.+++|++|+
T Consensus 66 ~~-----~~i~~~~~~~~~i~~~~i~~~~~~gi~~~~~~~~~~i~~n~~~~~~~~gi~~~~~-------~~~~~~i~~n~ 133 (158)
T PF13229_consen 66 NG-----SGIYVSGSSNITIENNRIENNGDYGIYISNSSSNVTIENNTIHNNGGSGIYLEGG-------SSPNVTIENNT 133 (158)
T ss_dssp -S-----EEEECCS-CS-EEES-EEECSSS-SCE-TCEECS-EEES-EEECCTTSSCEEEEC-------C--S-EEECEE
T ss_pred cc-----ceEEEEecCCceecCcEEEcCCCccEEEeccCCCEEEEeEEEEeCcceeEEEECC-------CCCeEEEEEEE
Confidence 43 6888888999999999999854 4888873267999999999864 57777443 12468899999
Q ss_pred EeCCc-eEEEEE
Q 041993 266 FTGTQ-NGLRIK 276 (391)
Q Consensus 266 ~~~~~-~gi~i~ 276 (391)
+.+.. .|+.+.
T Consensus 134 i~~~~~~gi~~~ 145 (158)
T PF13229_consen 134 ISNNGGNGIYLI 145 (158)
T ss_dssp EECESSEEEE-T
T ss_pred EEeCcceeEEEE
Confidence 99875 677665
No 31
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=98.46 E-value=8.1e-06 Score=75.12 Aligned_cols=135 Identities=21% Similarity=0.246 Sum_probs=104.6
Q ss_pred EEEEeeeeeEEeceeEeCCCccccccccCCCCCCCCCeeEEEEeecceEEEeEEEecCCceeEEEeceeeEEEEeEEEEc
Q 041993 109 LFFQHVDGVTLNSGILDGQGTALWACKNSGKNCPSGATSMGFSNCNNIAINGLTSLNSQMYHVVFNGCNNVKLKGVKVLA 188 (391)
Q Consensus 109 i~~~~~~ni~I~GG~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~n~~~~~i~~~~~~nv~i~n~~i~~ 188 (391)
+.+.+.+++.|++-++.... ..+.+..+++++|++.++.+. .+++++..+++++|++..+..
T Consensus 16 i~l~~~~~~~i~~n~i~~~~-----------------~gi~~~~s~~~~I~~n~i~~~-~~GI~~~~s~~~~i~~n~i~~ 77 (236)
T PF05048_consen 16 IYLWNSSNNSIENNTISNSR-----------------DGIYVENSDNNTISNNTISNN-RYGIHLMGSSNNTIENNTISN 77 (236)
T ss_pred EEEEeCCCCEEEcCEEEeCC-----------------CEEEEEEcCCeEEEeeEEECC-CeEEEEEccCCCEEEeEEEEc
Confidence 44555666777664443221 246888999999999999888 788999999999999999997
Q ss_pred CCCCCCCCceeeeccccEEEEeeEEecCCceEEeCCCceeEEEEeeEEcC-CceEEEeecCCCCCCCcEEEEEEEeeEEe
Q 041993 189 SGNSPNTDGIHVQLSSDVTILNTRISTGDDCVSIGPGTSNLWIENVACGP-GHGISIGSLGKDLNEAGVQNVTVKTVTFT 267 (391)
Q Consensus 189 ~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~nv~i~n~~~~~-~~gi~igs~g~~~~~~~i~nI~i~n~~~~ 267 (391)
. ..||.+..+.+.+|+++.+.....+|.+.. +.+.+|+++++.. ..||.+... .+.+|+++++.
T Consensus 78 n-----~~Gi~l~~s~~~~I~~N~i~~n~~GI~l~~-s~~~~I~~N~i~~~~~GI~l~~s---------~~n~I~~N~i~ 142 (236)
T PF05048_consen 78 N-----GYGIYLMGSSNNTISNNTISNNGYGIYLYG-SSNNTISNNTISNNGYGIYLSSS---------SNNTITGNTIS 142 (236)
T ss_pred c-----CCCEEEEcCCCcEEECCEecCCCceEEEee-CCceEEECcEEeCCCEEEEEEeC---------CCCEEECeEEe
Confidence 3 378999988877999999998777888876 7778899999874 357877332 56778888888
Q ss_pred CC-ceEEEEE
Q 041993 268 GT-QNGLRIK 276 (391)
Q Consensus 268 ~~-~~gi~i~ 276 (391)
+. ..|+.+.
T Consensus 143 ~n~~~Gi~~~ 152 (236)
T PF05048_consen 143 NNTDYGIYFL 152 (236)
T ss_pred CCCccceEEe
Confidence 88 7888843
No 32
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=98.36 E-value=1.7e-05 Score=73.00 Aligned_cols=136 Identities=23% Similarity=0.195 Sum_probs=111.1
Q ss_pred eeEEEEeecceEEEeEEEecCCceeEEEeceeeEEEEeEEEEcCCCCCCCCceeeeccccEEEEeeEEecCCceEEeCCC
Q 041993 146 TSMGFSNCNNIAINGLTSLNSQMYHVVFNGCNNVKLKGVKVLASGNSPNTDGIHVQLSSDVTILNTRISTGDDCVSIGPG 225 (391)
Q Consensus 146 ~~i~~~~~~nv~i~~v~i~n~~~~~i~~~~~~nv~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~ 225 (391)
..|.+.++++..|++.++.+.. .++.+..+.+++|++.++... ..||++..+++++|+++.+.....++.+..
T Consensus 14 ~Gi~l~~~~~~~i~~n~i~~~~-~gi~~~~s~~~~I~~n~i~~~-----~~GI~~~~s~~~~i~~n~i~~n~~Gi~l~~- 86 (236)
T PF05048_consen 14 NGIYLWNSSNNSIENNTISNSR-DGIYVENSDNNTISNNTISNN-----RYGIHLMGSSNNTIENNTISNNGYGIYLMG- 86 (236)
T ss_pred CcEEEEeCCCCEEEcCEEEeCC-CEEEEEEcCCeEEEeeEEECC-----CeEEEEEccCCCEEEeEEEEccCCCEEEEc-
Confidence 3588889999999999997664 667899999999999999974 579999999999999999999779999988
Q ss_pred ceeEEEEeeEEcCC-ceEEEeecCCCCCCCcEEEEEEEeeEEeCCceEEEEEEecCCCCeeEEEEEEEEEEEecC-CccE
Q 041993 226 TSNLWIENVACGPG-HGISIGSLGKDLNEAGVQNVTVKTVTFTGTQNGLRIKSWGRPSNGFARNILFRNAIMKNV-QNPI 303 (391)
Q Consensus 226 ~~nv~i~n~~~~~~-~gi~igs~g~~~~~~~i~nI~i~n~~~~~~~~gi~i~~~~~~~~g~i~nI~~~ni~~~~~-~~~i 303 (391)
+.+.+|+++.+... .||.+.. ..+.+|+++++.+...||.+... .+.++++.++.+. ..++
T Consensus 87 s~~~~I~~N~i~~n~~GI~l~~---------s~~~~I~~N~i~~~~~GI~l~~s--------~~n~I~~N~i~~n~~~Gi 149 (236)
T PF05048_consen 87 SSNNTISNNTISNNGYGIYLYG---------SSNNTISNNTISNNGYGIYLSSS--------SNNTITGNTISNNTDYGI 149 (236)
T ss_pred CCCcEEECCEecCCCceEEEee---------CCceEEECcEEeCCCEEEEEEeC--------CCCEEECeEEeCCCccce
Confidence 55569999999864 4777632 24578999999988889988743 4477777777776 6777
Q ss_pred EE
Q 041993 304 II 305 (391)
Q Consensus 304 ~i 305 (391)
.+
T Consensus 150 ~~ 151 (236)
T PF05048_consen 150 YF 151 (236)
T ss_pred EE
Confidence 73
No 33
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=98.35 E-value=0.00018 Score=70.42 Aligned_cols=33 Identities=27% Similarity=0.317 Sum_probs=22.4
Q ss_pred cHHHHHHHHHHHcCCCCCcEEEEcCCeEEEeeeeee
Q 041993 42 STKAFLSAWANACGSPRAATIYVPPGRFFLRNVAFQ 77 (391)
Q Consensus 42 ~t~aiq~Ai~~a~~~~~g~~v~ip~G~Y~~~~~~l~ 77 (391)
+.++||+||++| .+|++|+++.|+|.-..+.+.
T Consensus 3 s~~~lq~Ai~~a---~pGD~I~L~~Gty~~~~i~~~ 35 (425)
T PF14592_consen 3 SVAELQSAIDNA---KPGDTIVLADGTYKDVEIVFK 35 (425)
T ss_dssp SHHHHHHHHHH-----TT-EEEE-SEEEET-EEEE-
T ss_pred CHHHHHHHHHhC---CCCCEEEECCceeecceEEEE
Confidence 578999999876 579999999999984344543
No 34
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=98.34 E-value=5.3e-05 Score=69.36 Aligned_cols=41 Identities=20% Similarity=0.236 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHcCCCCCcEEEEcCCeEEEe-----eeeeeCCccCccEEEEEcc
Q 041993 43 TKAFLSAWANACGSPRAATIYVPPGRFFLR-----NVAFQGPCKNNRITIRIDG 91 (391)
Q Consensus 43 t~aiq~Ai~~a~~~~~g~~v~ip~G~Y~~~-----~~~l~~~~~s~~~~l~~~G 91 (391)
-+-|++|++.| ..|.+|+|-+|+|.-. ++.++ + +++|+++.
T Consensus 15 ~~Ti~~A~~~a---~~g~~i~l~~GtY~~~~ge~fPi~i~----~-gVtl~G~~ 60 (246)
T PF07602_consen 15 FKTITKALQAA---QPGDTIQLAPGTYSEATGETFPIIIK----P-GVTLIGNE 60 (246)
T ss_pred HHHHHHHHHhC---CCCCEEEECCceeccccCCcccEEec----C-CeEEeecc
Confidence 36799999766 5689999999999754 35565 5 78887764
No 35
>smart00656 Amb_all Amb_all domain.
Probab=98.29 E-value=4.6e-05 Score=67.66 Aligned_cols=99 Identities=20% Similarity=0.252 Sum_probs=71.9
Q ss_pred eEEEeceeeEEEEeEEEEcCCC--CCCCCceeeeccccEEEEeeEEecC----------CceEEeCCCceeEEEEeeEEc
Q 041993 170 HVVFNGCNNVKLKGVKVLASGN--SPNTDGIHVQLSSDVTILNTRISTG----------DDCVSIGPGTSNLWIENVACG 237 (391)
Q Consensus 170 ~i~~~~~~nv~i~n~~i~~~~~--~~~~DGi~~~~s~nv~I~n~~i~~~----------dD~i~i~~~~~nv~i~n~~~~ 237 (391)
++.+..++||.|+|++|..... ..+.|+|.+..+++|+|++|++..+ |..+.++.++.++++++|.|.
T Consensus 33 gl~i~~~~NVIirnl~i~~~~~~~~~~~D~i~~~~~~~VwIDHct~s~~~~~~~~~~~~D~~~di~~~s~~vTvs~~~f~ 112 (190)
T smart00656 33 GLTIKSVSNVIIRNLTIHDPKPVYGSDGDAISIDGSSNVWIDHVSLSGCTVTGFGDDTYDGLIDIKNGSTYVTISNNYFH 112 (190)
T ss_pred EEEEEecceEEEeCCEEECCccCCCCCCCEEEEeCCCeEEEEccEeEcceeccCCCCCCCccEEECcccccEEEECceEe
Confidence 3444446677777777776432 2467999999899999999999986 555677888999999999997
Q ss_pred CC-ceEEEeecCCCCCCCcEEEEEEEeeEEeCC
Q 041993 238 PG-HGISIGSLGKDLNEAGVQNVTVKTVTFTGT 269 (391)
Q Consensus 238 ~~-~gi~igs~g~~~~~~~i~nI~i~n~~~~~~ 269 (391)
.. .+.-+|+..... .....+|++.++.+.++
T Consensus 113 ~h~~~~liG~~d~~~-~~~~~~vT~h~N~~~~~ 144 (190)
T smart00656 113 NHWKVMLLGHSDSDT-DDGKMRVTIAHNYFGNL 144 (190)
T ss_pred cCCEEEEEccCCCcc-ccccceEEEECcEEcCc
Confidence 64 367777642221 12255799999999775
No 36
>smart00656 Amb_all Amb_all domain.
Probab=98.12 E-value=0.00017 Score=63.98 Aligned_cols=119 Identities=19% Similarity=0.217 Sum_probs=79.4
Q ss_pred EEEEeecceEEEeEEEecCC------ceeEEEeceeeEEEEeEEEEcCC----CCCCCCce-eee-ccccEEEEeeEEec
Q 041993 148 MGFSNCNNIAINGLTSLNSQ------MYHVVFNGCNNVKLKGVKVLASG----NSPNTDGI-HVQ-LSSDVTILNTRIST 215 (391)
Q Consensus 148 i~~~~~~nv~i~~v~i~n~~------~~~i~~~~~~nv~i~n~~i~~~~----~~~~~DGi-~~~-~s~nv~I~n~~i~~ 215 (391)
|.+..++|+.|+++++++.. ..++.+..+++|.|+.|++.... .....||. ++. .+.+++|++|.|..
T Consensus 34 l~i~~~~NVIirnl~i~~~~~~~~~~~D~i~~~~~~~VwIDHct~s~~~~~~~~~~~~D~~~di~~~s~~vTvs~~~f~~ 113 (190)
T smart00656 34 LTIKSVSNVIIRNLTIHDPKPVYGSDGDAISIDGSSNVWIDHVSLSGCTVTGFGDDTYDGLIDIKNGSTYVTISNNYFHN 113 (190)
T ss_pred EEEEecceEEEeCCEEECCccCCCCCCCEEEEeCCCeEEEEccEeEcceeccCCCCCCCccEEECcccccEEEECceEec
Confidence 55666778888888887653 25788888888888888888741 01124554 443 47999999999987
Q ss_pred CCceEEeCCCc-------eeEEEEeeEEcCCc--eEEEeecCCCCCCCcEEEEEEEeeEEeCCc-eEEEEE
Q 041993 216 GDDCVSIGPGT-------SNLWIENVACGPGH--GISIGSLGKDLNEAGVQNVTVKTVTFTGTQ-NGLRIK 276 (391)
Q Consensus 216 ~dD~i~i~~~~-------~nv~i~n~~~~~~~--gi~igs~g~~~~~~~i~nI~i~n~~~~~~~-~gi~i~ 276 (391)
..-+..++++. .+|++.+|.+.+.. .-.+. .+ .+++.|+.+.+.. +++.+.
T Consensus 114 h~~~~liG~~d~~~~~~~~~vT~h~N~~~~~~~R~P~~r--------~g--~~hv~NN~~~n~~~~~~~~~ 174 (190)
T smart00656 114 HWKVMLLGHSDSDTDDGKMRVTIAHNYFGNLRQRAPRVR--------FG--YVHVYNNYYTGWTSYAIGGR 174 (190)
T ss_pred CCEEEEEccCCCccccccceEEEECcEEcCcccCCCccc--------CC--EEEEEeeEEeCcccEeEecC
Confidence 66666666642 27999999987632 22221 11 4788899888865 455443
No 37
>PLN02497 probable pectinesterase
Probab=98.09 E-value=0.0012 Score=63.24 Aligned_cols=199 Identities=15% Similarity=0.090 Sum_probs=105.1
Q ss_pred cHHHHHHHHHHHcCCC-CCcEEEEcCCeEEEeeeeeeCCccCccEEEEEccEEEeccCccccCCCCceEEEEeeeeeEEe
Q 041993 42 STKAFLSAWANACGSP-RAATIYVPPGRFFLRNVAFQGPCKNNRITIRIDGTLVAPSDYRVIGNAGNWLFFQHVDGVTLN 120 (391)
Q Consensus 42 ~t~aiq~Ai~~a~~~~-~g~~v~ip~G~Y~~~~~~l~~~~~s~~~~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~ni~I~ 120 (391)
|-.-||+||+++.... .-.+++|.+|+|.-. +.++.. |+ +++|+++|. + ...|...+..
T Consensus 43 df~TIq~AIdavP~~~~~~~~I~Ik~G~Y~Ek-V~Ip~~-k~-~itl~G~g~-----~-------~tiIt~~~~~----- 102 (331)
T PLN02497 43 NFTTIQSAIDSVPSNNKHWFCINVKAGLYREK-VKIPYD-KP-FIVLVGAGK-----R-------RTRIEWDDHD----- 102 (331)
T ss_pred CccCHHHHHhhccccCCceEEEEEeCcEEEEE-EEecCC-CC-cEEEEecCC-----C-------CceEEEeccc-----
Confidence 5778999997653321 123689999999643 333211 25 888888761 0 0011111000
Q ss_pred ceeEeCCCccccccccCCCCCCCCCeeEEEEeecceEEEeEEEecCCc-----------eeEEEe-ceeeEEEEeEEEEc
Q 041993 121 SGILDGQGTALWACKNSGKNCPSGATSMGFSNCNNIAINGLTSLNSQM-----------YHVVFN-GCNNVKLKGVKVLA 188 (391)
Q Consensus 121 GG~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~n~~~-----------~~i~~~-~~~nv~i~n~~i~~ 188 (391)
++ ....-.....+++..+|+++.|... ..+-+. ..+...+++|.|..
T Consensus 103 -~t--------------------~~SaT~~v~a~~f~a~nlT~~Nt~~~~~~~~~~~~~QAVAl~v~gDr~~fy~C~f~G 161 (331)
T PLN02497 103 -ST--------------------AQSPTFSTLADNTVVKSITFANSYNFPSKGNKNPRVPAVAAMIGGDKSAFYSCGFAG 161 (331)
T ss_pred -cc--------------------cCceEEEEecCCeEEEccEEEeCCCCccccCCCCCcceEEEEecCCcEEEEeeEEec
Confidence 00 0011223456778888888877642 122222 35677788888877
Q ss_pred CCCCCCCCceeeeccccEEEEeeEEecCCceEEeCCCceeEEEEeeEEcCC--------ce-EEEeecCCCCCCCcEEEE
Q 041993 189 SGNSPNTDGIHVQLSSDVTILNTRISTGDDCVSIGPGTSNLWIENVACGPG--------HG-ISIGSLGKDLNEAGVQNV 259 (391)
Q Consensus 189 ~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~nv~i~n~~~~~~--------~g-i~igs~g~~~~~~~i~nI 259 (391)
..| -+-. ....-.+++|.|...=|-| + |.....++||++..- .| |.--+ +.........
T Consensus 162 ~QD-----TLy~-~~gRqyf~~C~IeG~VDFI-F--G~g~a~Fe~C~I~s~~~~~~~~~~g~ITA~~---r~~~~~~~Gf 229 (331)
T PLN02497 162 VQD-----TLWD-SDGRHYFKRCTIQGAVDFI-F--GSGQSIYESCVIQVLGGQLEPGLAGFITAQG---RTNPYDANGF 229 (331)
T ss_pred ccc-----ceee-CCCcEEEEeCEEEecccEE-c--cCceEEEEccEEEEecCcCCCCCceEEEecC---CCCCCCCceE
Confidence 433 2221 2345677888888654432 2 235678888887631 12 11111 0011223456
Q ss_pred EEEeeEEeCCceEEEEEEecCCCCeeEEEEEEEEEEEec
Q 041993 260 TVKTVTFTGTQNGLRIKSWGRPSNGFARNILFRNAIMKN 298 (391)
Q Consensus 260 ~i~n~~~~~~~~gi~i~~~~~~~~g~i~nI~~~ni~~~~ 298 (391)
.|.||.+.+.. -+.+. . .......++|.+..|.+
T Consensus 230 vF~~C~itg~g-~~yLG---R-PW~~ysrvvf~~t~m~~ 263 (331)
T PLN02497 230 VFKNCLVYGTG-SAYLG---R-PWRGYSRVLFYNSNLTD 263 (331)
T ss_pred EEEccEEccCC-CEEEe---C-CCCCCceEEEEecccCC
Confidence 78888887642 22232 1 23345677788877765
No 38
>PLN02176 putative pectinesterase
Probab=98.06 E-value=0.0023 Score=61.52 Aligned_cols=199 Identities=16% Similarity=0.100 Sum_probs=108.6
Q ss_pred cHHHHHHHHHHHcCCC-CCcEEEEcCCeEEEeeeeeeCCccCccEEEEEccEEEeccCccccCCCCceEEEEeeeeeEEe
Q 041993 42 STKAFLSAWANACGSP-RAATIYVPPGRFFLRNVAFQGPCKNNRITIRIDGTLVAPSDYRVIGNAGNWLFFQHVDGVTLN 120 (391)
Q Consensus 42 ~t~aiq~Ai~~a~~~~-~g~~v~ip~G~Y~~~~~~l~~~~~s~~~~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~ni~I~ 120 (391)
|-.-||+||+++.... .--+|+|++|+|.-. +.++.. |+ +++|.++|. + ...|...+..
T Consensus 50 df~TIq~AIdavP~~~~~~~~I~Ik~GvY~Ek-V~Ip~~-k~-~vtl~G~g~-----~-------~TiIt~~~~~----- 109 (340)
T PLN02176 50 YFKTVQSAIDSIPLQNQNWIRILIQNGIYREK-VTIPKE-KG-YIYMQGKGI-----E-------KTIIAYGDHQ----- 109 (340)
T ss_pred CccCHHHHHhhchhcCCceEEEEECCcEEEEE-EEECCC-Cc-cEEEEEcCC-----C-------ceEEEEeCCc-----
Confidence 5778999997653221 124689999999743 344211 25 899988761 0 0011110000
Q ss_pred ceeEeCCCccccccccCCCCCCCCCeeEEEEeecceEEEeEEEecCCc----------eeEEEe-ceeeEEEEeEEEEcC
Q 041993 121 SGILDGQGTALWACKNSGKNCPSGATSMGFSNCNNIAINGLTSLNSQM----------YHVVFN-GCNNVKLKGVKVLAS 189 (391)
Q Consensus 121 GG~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~n~~~----------~~i~~~-~~~nv~i~n~~i~~~ 189 (391)
++ + .... .....+++..+|+++.|... ..+-+. ..+...+.+|.|...
T Consensus 110 -~t-~------------------~saT-~~v~a~~F~a~nlT~~Nt~~~~~~~~~~~~QAVAl~v~gDr~~f~~C~f~G~ 168 (340)
T PLN02176 110 -AT-D------------------TSAT-FTSYASNIIITGITFKNTYNIASNSSRPTKPAVAARMLGDKYAIIDSSFDGF 168 (340)
T ss_pred -cc-c------------------cceE-EEEECCCEEEEeeEEEeCCCccCCCCCCccceEEEEecCccEEEEccEEecc
Confidence 00 0 0011 22357778888888877632 222222 357788888888864
Q ss_pred CCCCCCCceeeeccccEEEEeeEEecCCceEEeCCCceeEEEEeeEEcCC---------ce-EEEeecCCCCCCCcEEEE
Q 041993 190 GNSPNTDGIHVQLSSDVTILNTRISTGDDCVSIGPGTSNLWIENVACGPG---------HG-ISIGSLGKDLNEAGVQNV 259 (391)
Q Consensus 190 ~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~nv~i~n~~~~~~---------~g-i~igs~g~~~~~~~i~nI 259 (391)
.| -+... ...-.+++|.|...=|-|- |.....++||++..- .| |.--+ +.....-...
T Consensus 169 QD-----TLy~~-~gRqyf~~CyIeG~VDFIF---G~a~a~Fe~C~I~s~~~~~~~~~~~g~ITA~~---r~~~~~~~Gf 236 (340)
T PLN02176 169 QD-----TLFDG-KGRHYYKRCVISGGIDFIF---GYAQSIFEGCTLKLTLGIYPPNEPYGTITAQG---RPSPSDKGGF 236 (340)
T ss_pred cc-----eeEeC-CcCEEEEecEEEecccEEe---cCceEEEeccEEEEecccCCCCCCcEEEEeCC---CCCCCCCcEE
Confidence 32 22222 3467788888887545332 245788888888631 12 21111 0111223467
Q ss_pred EEEeeEEeCCceEEEEEEecCCCCeeEEEEEEEEEEEec
Q 041993 260 TVKTVTFTGTQNGLRIKSWGRPSNGFARNILFRNAIMKN 298 (391)
Q Consensus 260 ~i~n~~~~~~~~gi~i~~~~~~~~g~i~nI~~~ni~~~~ 298 (391)
.|.||++.+.. -+.+. ........++|.|..|.+
T Consensus 237 vF~~C~itg~g-~~yLG----RPW~~yarvVf~~t~m~~ 270 (340)
T PLN02176 237 VFKDCTVTGVG-KALLG----RAWGSYARVIFYRSRFSD 270 (340)
T ss_pred EEECCEEccCc-ceeee----cCCCCCceEEEEecCcCC
Confidence 88999987743 22222 133446678888888865
No 39
>PLN02480 Probable pectinesterase
Probab=98.03 E-value=0.00094 Score=64.35 Aligned_cols=201 Identities=12% Similarity=0.079 Sum_probs=111.2
Q ss_pred cccHHHHHHHHHHHcCCC-CCcEEEEcCCeEEEeeeeeeCCccCccEEEEEccEEEeccCccccCCCCceEEEEeeeeeE
Q 041993 40 TDSTKAFLSAWANACGSP-RAATIYVPPGRFFLRNVAFQGPCKNNRITIRIDGTLVAPSDYRVIGNAGNWLFFQHVDGVT 118 (391)
Q Consensus 40 ~d~t~aiq~Ai~~a~~~~-~g~~v~ip~G~Y~~~~~~l~~~~~s~~~~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~ni~ 118 (391)
..|-.-||+||+++.... .-.+|+|++|+|. ..+.+... |+ +++|.+++. +...
T Consensus 57 ~g~f~TIQ~AIdaap~~~~~~~~I~Ik~GvY~-E~V~I~~~-kp-~ItL~G~g~----------------------~~Tv 111 (343)
T PLN02480 57 KGDFTSVQSAIDAVPVGNSEWIIVHLRKGVYR-EKVHIPEN-KP-FIFMRGNGK----------------------GRTS 111 (343)
T ss_pred CCCcccHHHHHhhCccCCCceEEEEEcCcEEE-EEEEECCC-Cc-eEEEEecCC----------------------CCeE
Confidence 346889999997652111 1124789999997 44555311 23 677776641 1111
Q ss_pred EeceeEeCCCccccccccCCCCCCCCCeeEEEEeecceEEEeEEEecCC---------ceeEEE-eceeeEEEEeEEEEc
Q 041993 119 LNSGILDGQGTALWACKNSGKNCPSGATSMGFSNCNNIAINGLTSLNSQ---------MYHVVF-NGCNNVKLKGVKVLA 188 (391)
Q Consensus 119 I~GG~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~n~~---------~~~i~~-~~~~nv~i~n~~i~~ 188 (391)
|.+ +... .. .. .........++++++|++|+|.. ...+.+ ...+...++||.|..
T Consensus 112 I~~-----~~~~--------~~-~~-~saTvtV~a~~f~a~nLTf~Nta~~g~~~~~~~QAVAl~v~gDra~f~~c~f~G 176 (343)
T PLN02480 112 IVW-----SQSS--------SD-NA-ASATFTVEAPHFVAFGISIRNDAPTGMAFTSENQSVAAFVGADKVAFYHCAFYS 176 (343)
T ss_pred EEc-----cccc--------cC-CC-CceEEEEECCCEEEEeeEEEecCCCCCCCCCCCceEEEEecCCcEEEEeeEEec
Confidence 211 1000 00 00 11223445778888888888872 133444 346788888888887
Q ss_pred CCCCCCCCceeeeccccEEEEeeEEecCCceEEeCCCceeEEEEeeEEcCC-------ce-EEEeecCCCCCCCcEEEEE
Q 041993 189 SGNSPNTDGIHVQLSSDVTILNTRISTGDDCVSIGPGTSNLWIENVACGPG-------HG-ISIGSLGKDLNEAGVQNVT 260 (391)
Q Consensus 189 ~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~nv~i~n~~~~~~-------~g-i~igs~g~~~~~~~i~nI~ 260 (391)
..| -+-. ....-.++||.|...=|-| .|.....++||++..- .| |.-.+. ....-....
T Consensus 177 ~QD-----TLy~-~~gR~yf~~C~IeG~VDFI---FG~g~a~fe~C~i~s~~~~~~~~~G~ITA~~r----~~~~~~Gfv 243 (343)
T PLN02480 177 THN-----TLFD-YKGRHYYHSCYIQGSIDFI---FGRGRSIFHNCEIFVIADRRVKIYGSITAHNR----ESEDNSGFV 243 (343)
T ss_pred ccc-----eeEe-CCCCEEEEeCEEEeeeeEE---ccceeEEEEccEEEEecCCCCCCceEEEcCCC----CCCCCCEEE
Confidence 433 2221 2345778888888654432 2345788888888642 13 221111 012234577
Q ss_pred EEeeEEeCCceEEEEEEecCCCCeeEEEEEEEEEEEec
Q 041993 261 VKTVTFTGTQNGLRIKSWGRPSNGFARNILFRNAIMKN 298 (391)
Q Consensus 261 i~n~~~~~~~~gi~i~~~~~~~~g~i~nI~~~ni~~~~ 298 (391)
|.||++.+.. .+.+. ........++|.|+.|.+
T Consensus 244 F~~C~i~g~g-~~yLG----RPW~~ya~vVf~~t~l~~ 276 (343)
T PLN02480 244 FIKGKVYGIG-EVYLG----RAKGAYSRVIFAKTYLSK 276 (343)
T ss_pred EECCEEcccC-ceeee----cCCCCcceEEEEecccCC
Confidence 8888887642 23332 134456778888888864
No 40
>PLN02773 pectinesterase
Probab=98.02 E-value=0.0016 Score=62.09 Aligned_cols=211 Identities=15% Similarity=0.094 Sum_probs=114.4
Q ss_pred cHHHHHHHHHHHcCCC-CCcEEEEcCCeEEEeeeeeeCCccCccEEEEEcc---EEEeccCccccCCCCceEEEEeeeee
Q 041993 42 STKAFLSAWANACGSP-RAATIYVPPGRFFLRNVAFQGPCKNNRITIRIDG---TLVAPSDYRVIGNAGNWLFFQHVDGV 117 (391)
Q Consensus 42 ~t~aiq~Ai~~a~~~~-~g~~v~ip~G~Y~~~~~~l~~~~~s~~~~l~~~G---~l~~~~~~~~~~~~~~~i~~~~~~ni 117 (391)
|=.-||+||+++.... .--+|+|.+|+|.- .+.+... |. +++|.+++ ++..-.+....... . ...
T Consensus 16 df~TIq~Aida~P~~~~~~~~I~Ik~G~Y~E-~V~I~~~-k~-~itl~G~~~~~TiI~~~~~a~~~~~------~-~~~- 84 (317)
T PLN02773 16 DYCTVQDAIDAVPLCNRCRTVIRVAPGVYRQ-PVYVPKT-KN-LITLAGLSPEATVLTWNNTATKIDH------H-QAS- 84 (317)
T ss_pred CccCHHHHHhhchhcCCceEEEEEeCceEEE-EEEECcC-Cc-cEEEEeCCCCceEEEccCccccccc------c-ccc-
Confidence 4778999998763322 12478999999973 3445311 24 78888875 22211111000000 0 000
Q ss_pred EEeceeEeCCCccccccccCCCCCCCCCeeEEEEeecceEEEeEEEecCCc----eeEEEe-ceeeEEEEeEEEEcCCCC
Q 041993 118 TLNSGILDGQGTALWACKNSGKNCPSGATSMGFSNCNNIAINGLTSLNSQM----YHVVFN-GCNNVKLKGVKVLASGNS 192 (391)
Q Consensus 118 ~I~GG~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~n~~~----~~i~~~-~~~nv~i~n~~i~~~~~~ 192 (391)
...| .+ .....-....++++..++++|+|... ..+-+. ..+.+.+.+|+|....|
T Consensus 85 ~~~g-----~g--------------T~~SaTv~v~a~~f~a~nlT~~Nt~~~~~gQAvAl~v~gDr~~f~~c~~~G~QD- 144 (317)
T PLN02773 85 RVIG-----TG--------------TFGCGTVIVEGEDFIAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQD- 144 (317)
T ss_pred cccC-----cC--------------ccCceEEEEECCCeEEEeeEEEeCCCCCCCcEEEEEecCccEEEEccEeecccc-
Confidence 0001 00 11122345578999999999998742 222222 35778888888887433
Q ss_pred CCCCceeeeccccEEEEeeEEecCCceEEeCCCceeEEEEeeEEcCC-ce-EEEeecCCCCCCCcEEEEEEEeeEEeCCc
Q 041993 193 PNTDGIHVQLSSDVTILNTRISTGDDCVSIGPGTSNLWIENVACGPG-HG-ISIGSLGKDLNEAGVQNVTVKTVTFTGTQ 270 (391)
Q Consensus 193 ~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~nv~i~n~~~~~~-~g-i~igs~g~~~~~~~i~nI~i~n~~~~~~~ 270 (391)
-+-.. ..+-.++||.|...=|-|- |.....+++|++..- .| |.--+. .....-....|.||++.+..
T Consensus 145 ----TL~~~-~gr~yf~~c~IeG~VDFIF---G~g~a~Fe~c~i~s~~~g~ITA~~r---~~~~~~~GfvF~~c~it~~~ 213 (317)
T PLN02773 145 ----TLYLH-YGKQYLRDCYIEGSVDFIF---GNSTALLEHCHIHCKSAGFITAQSR---KSSQESTGYVFLRCVITGNG 213 (317)
T ss_pred ----eeEeC-CCCEEEEeeEEeecccEEe---eccEEEEEeeEEEEccCcEEECCCC---CCCCCCceEEEEccEEecCC
Confidence 23322 2457888888887545332 245688888888652 34 221111 01112245778888888753
Q ss_pred e--EEEEEEecCCCCeeEEEEEEEEEEEec
Q 041993 271 N--GLRIKSWGRPSNGFARNILFRNAIMKN 298 (391)
Q Consensus 271 ~--gi~i~~~~~~~~g~i~nI~~~ni~~~~ 298 (391)
. -+.+. . .......++|.|+.|.+
T Consensus 214 ~~~~~yLG---R-pW~~~a~vVf~~t~l~~ 239 (317)
T PLN02773 214 GSGYMYLG---R-PWGPFGRVVFAYTYMDA 239 (317)
T ss_pred CCcceeec---C-CCCCCceEEEEecccCC
Confidence 2 12222 1 33445678888888875
No 41
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=97.98 E-value=2.9e-05 Score=69.57 Aligned_cols=76 Identities=29% Similarity=0.344 Sum_probs=53.7
Q ss_pred CCCCceeeeccccEEEEeeEEecC---------CceEEeCCCceeEEEEeeEEcCC-ceEEEeecCCCCCCCcEEEEEEE
Q 041993 193 PNTDGIHVQLSSDVTILNTRISTG---------DDCVSIGPGTSNLWIENVACGPG-HGISIGSLGKDLNEAGVQNVTVK 262 (391)
Q Consensus 193 ~~~DGi~~~~s~nv~I~n~~i~~~---------dD~i~i~~~~~nv~i~n~~~~~~-~gi~igs~g~~~~~~~i~nI~i~ 262 (391)
...|+|.+..++||+|++|++... |..+.++.++.+|+|++|.+.+. .+.-+|+......... .++++.
T Consensus 73 ~~~Dai~i~~~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~~~s~~vTiS~n~f~~~~k~~l~G~~d~~~~~~~-~~vT~h 151 (200)
T PF00544_consen 73 SDGDAISIDNSSNVWIDHCSFSWGNFECNSDSSDGLIDIKKGSDNVTISNNIFDNHNKTMLIGSSDSNSTDRG-LRVTFH 151 (200)
T ss_dssp CS--SEEEESTEEEEEES-EEEETTS-GGGSSSSSSEEEESSTEEEEEES-EEEEEEETCEESSCTTCGGGTT-EEEEEE
T ss_pred cCCCeEEEEecccEEEeccEEeccccccccccCCceEEEEeCCceEEEEchhccccccccccCCCCCccccCC-ceEEEE
Confidence 467899999999999999999866 55578887899999999999864 3566676422222334 889999
Q ss_pred eeEEeCC
Q 041993 263 TVTFTGT 269 (391)
Q Consensus 263 n~~~~~~ 269 (391)
++.+.++
T Consensus 152 hN~f~~~ 158 (200)
T PF00544_consen 152 HNYFANT 158 (200)
T ss_dssp S-EEEEE
T ss_pred eEEECch
Confidence 9999765
No 42
>PLN02682 pectinesterase family protein
Probab=97.96 E-value=0.0028 Score=61.47 Aligned_cols=211 Identities=15% Similarity=0.129 Sum_probs=115.2
Q ss_pred ccHHHHHHHHHHHcCCC-CCcEEEEcCCeEEEeeeeeeCCccCccEEEEEccEEEeccCccccCCCCceEEEEeeeeeEE
Q 041993 41 DSTKAFLSAWANACGSP-RAATIYVPPGRFFLRNVAFQGPCKNNRITIRIDGTLVAPSDYRVIGNAGNWLFFQHVDGVTL 119 (391)
Q Consensus 41 d~t~aiq~Ai~~a~~~~-~g~~v~ip~G~Y~~~~~~l~~~~~s~~~~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~ni~I 119 (391)
-|=.-||+||+++.... .-.+|+|.+|+|.-. +.++.. |+ +++|+++|. + ...|...+.-
T Consensus 80 Gdf~TIQ~AIdavP~~~~~r~vI~Ik~G~Y~Ek-V~Ip~~-k~-~Itl~G~g~-----~-------~TiIt~~~~a---- 140 (369)
T PLN02682 80 GDFTTIQAAIDSLPVINLVRVVIKVNAGTYREK-VNIPPL-KA-YITLEGAGA-----D-------KTIIQWGDTA---- 140 (369)
T ss_pred CCccCHHHHHhhccccCCceEEEEEeCceeeEE-EEEecc-Cc-eEEEEecCC-----C-------ccEEEecccc----
Confidence 35678999997653222 235789999999643 344211 25 899988862 0 0011110000
Q ss_pred eceeEeCCCccccccccCCCCCCCCCeeEEEEeecceEEEeEEEecCCc---------eeEEEe-ceeeEEEEeEEEEcC
Q 041993 120 NSGILDGQGTALWACKNSGKNCPSGATSMGFSNCNNIAINGLTSLNSQM---------YHVVFN-GCNNVKLKGVKVLAS 189 (391)
Q Consensus 120 ~GG~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~n~~~---------~~i~~~-~~~nv~i~n~~i~~~ 189 (391)
+.....|..+ .+....-.....+++..+|++|+|... ..+-+. ..+...+.+|+|...
T Consensus 141 --~~~~~~g~~~----------gT~~SAT~~v~a~~F~a~nlTf~Nt~~~~~~g~~g~QAVAL~v~gDr~~fy~C~f~G~ 208 (369)
T PLN02682 141 --DTPGPGGRPL----------GTYGSATFAVNSPYFIAKNITFKNTAPVPPPGALGKQAVALRISADTAAFYGCKFLGA 208 (369)
T ss_pred --CccCCCCCcc----------ccccceEEEEECCCeEEEeeEEEcccccCCCCCCcccEEEEEecCCcEEEEcceEecc
Confidence 0000011111 111223345568889999999998642 223332 467888888888874
Q ss_pred CCCCCCCceeeeccccEEEEeeEEecCCceEEeCCCceeEEEEeeEEcC---Cce-EEEeecCCCCCCCcEEEEEEEeeE
Q 041993 190 GNSPNTDGIHVQLSSDVTILNTRISTGDDCVSIGPGTSNLWIENVACGP---GHG-ISIGSLGKDLNEAGVQNVTVKTVT 265 (391)
Q Consensus 190 ~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~nv~i~n~~~~~---~~g-i~igs~g~~~~~~~i~nI~i~n~~ 265 (391)
.| -+-. ....-.++||.|...=|-|- |.....+++|++.. ..| |.--+. . ....-....|.||+
T Consensus 209 QD-----TLy~-~~gRqyf~~C~IeG~VDFIF---G~g~a~Fe~C~I~s~~~~~G~ITA~~r--~-~~~~~~GfvF~~C~ 276 (369)
T PLN02682 209 QD-----TLYD-HLGRHYFKDCYIEGSVDFIF---GNGLSLYEGCHLHAIARNFGALTAQKR--Q-SVLEDTGFSFVNCK 276 (369)
T ss_pred cc-----ceEE-CCCCEEEEeeEEcccccEEe---cCceEEEEccEEEEecCCCeEEecCCC--C-CCCCCceEEEEeeE
Confidence 33 2222 23457788888887544332 24578888888864 123 221111 0 11223467788888
Q ss_pred EeCCceEEEEEEecCCCCeeEEEEEEEEEEEecC
Q 041993 266 FTGTQNGLRIKSWGRPSNGFARNILFRNAIMKNV 299 (391)
Q Consensus 266 ~~~~~~gi~i~~~~~~~~g~i~nI~~~ni~~~~~ 299 (391)
+.+.. -+.+. . .......++|.|..|.+.
T Consensus 277 itg~g-~~yLG---R-pW~~yarvVf~~t~m~~~ 305 (369)
T PLN02682 277 VTGSG-ALYLG---R-AWGTFSRVVFAYTYMDNI 305 (369)
T ss_pred ecCCC-ceEee---c-CCCCcceEEEEeccCCCc
Confidence 87753 23332 1 334466788888888754
No 43
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=97.88 E-value=0.00099 Score=60.20 Aligned_cols=123 Identities=29% Similarity=0.474 Sum_probs=81.4
Q ss_pred eEEEeEEEecCC------ceeEEEeceeeEEEEeEEEEcCCCCCCCCceeeeccccEEEEeeEEecCCceEEeCCCceeE
Q 041993 156 IAINGLTSLNSQ------MYHVVFNGCNNVKLKGVKVLASGNSPNTDGIHVQLSSDVTILNTRISTGDDCVSIGPGTSNL 229 (391)
Q Consensus 156 v~i~~v~i~n~~------~~~i~~~~~~nv~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~nv 229 (391)
+.|+++++.... ..++.+..++++.|+|+++... +.+|+.+..+....+.+.... .++.+..+..++
T Consensus 94 ~~i~nl~i~~~~~~~~~~~~~i~~~~~~~~~i~nv~~~~~----~~~~i~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 166 (225)
T PF12708_consen 94 IQIRNLTIDGNGIDPNNNNNGIRFNSSQNVSISNVRIENS----GGDGIYFNTGTDYRIIGSTHV---SGIFIDNGSNNV 166 (225)
T ss_dssp EEEEEEEEEETCGCE-SCEEEEEETTEEEEEEEEEEEES-----SS-SEEEECCEECEEECCEEE---EEEEEESCEEEE
T ss_pred EEEEeeEEEcccccCCCCceEEEEEeCCeEEEEeEEEEcc----CccEEEEEccccCcEeecccc---eeeeeccceeEE
Confidence 337777776432 3568888899999999999874 447788775444444433322 122333235678
Q ss_pred EEEeeEEcCC-ceEEEeecCCCCCCCcEEEEEEEeeEEeC-CceEEEEEEecCCCCeeEEEEEEEEEEEecCCccE
Q 041993 230 WIENVACGPG-HGISIGSLGKDLNEAGVQNVTVKTVTFTG-TQNGLRIKSWGRPSNGFARNILFRNAIMKNVQNPI 303 (391)
Q Consensus 230 ~i~n~~~~~~-~gi~igs~g~~~~~~~i~nI~i~n~~~~~-~~~gi~i~~~~~~~~g~i~nI~~~ni~~~~~~~~i 303 (391)
.+.++.+..+ .|+..++ ++++++||.+.+ ...|+.+.... +++++|++++++..+|
T Consensus 167 ~~~~~~~~~~~~g~~~~~----------~~~~i~n~~~~~~~~~gi~i~~~~--------~~~i~n~~i~~~~~g~ 224 (225)
T PF12708_consen 167 IVNNCIFNGGDNGIILGN----------NNITISNNTFEGNCGNGINIEGGS--------NIIISNNTIENCDDGI 224 (225)
T ss_dssp EEECEEEESSSCSEECEE----------EEEEEECEEEESSSSESEEEEECS--------EEEEEEEEEESSSEEE
T ss_pred EECCccccCCCceeEeec----------ceEEEEeEEECCccceeEEEECCe--------EEEEEeEEEECCccCc
Confidence 8888888765 4643322 689999999998 67898887442 2888888888887665
No 44
>PLN02634 probable pectinesterase
Probab=97.88 E-value=0.011 Score=57.09 Aligned_cols=206 Identities=15% Similarity=0.130 Sum_probs=110.5
Q ss_pred cHHHHHHHHHHHcCC-CCCcEEEEcCCeEEEeeeeeeCCccCccEEEEEcc---EEEeccCccccCCCCceEEEEeeeee
Q 041993 42 STKAFLSAWANACGS-PRAATIYVPPGRFFLRNVAFQGPCKNNRITIRIDG---TLVAPSDYRVIGNAGNWLFFQHVDGV 117 (391)
Q Consensus 42 ~t~aiq~Ai~~a~~~-~~g~~v~ip~G~Y~~~~~~l~~~~~s~~~~l~~~G---~l~~~~~~~~~~~~~~~i~~~~~~ni 117 (391)
|=..||+||+++... ..-.+|+|.+|+|.-. +.+... |+ +++|+++| ++..-.+.. .+
T Consensus 67 df~TIQaAIda~P~~~~~r~vI~Ik~GvY~Ek-V~Ip~~-k~-~ItL~G~g~~~TiIt~~~~a--------------~~- 128 (359)
T PLN02634 67 DFRSVQDAVDSVPKNNTMSVTIKINAGFYREK-VVVPAT-KP-YITFQGAGRDVTAIEWHDRA--------------SD- 128 (359)
T ss_pred CccCHHHHHhhCcccCCccEEEEEeCceEEEE-EEEcCC-CC-eEEEEecCCCceEEEecccc--------------cc-
Confidence 577899999765322 1234789999999643 333211 25 89998886 221100100 00
Q ss_pred EEeceeEeCCCccccccccCCCCCCCCCeeEEEEeecceEEEeEEEecCCc---------eeEEEe-ceeeEEEEeEEEE
Q 041993 118 TLNSGILDGQGTALWACKNSGKNCPSGATSMGFSNCNNIAINGLTSLNSQM---------YHVVFN-GCNNVKLKGVKVL 187 (391)
Q Consensus 118 ~I~GG~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~n~~~---------~~i~~~-~~~nv~i~n~~i~ 187 (391)
....|..+ ......-.....+++..+|++|+|... ..+-+. ..+...+.+|.|.
T Consensus 129 ------~~~~g~~~----------~T~~SaTv~V~a~~F~a~niTf~Nta~~~~~g~~~~QAVAl~v~gDra~f~~C~f~ 192 (359)
T PLN02634 129 ------RGANGQQL----------RTYQTASVTVYANYFTARNISFKNTAPAPMPGMQGWQAVAFRISGDKAFFFGCGFY 192 (359)
T ss_pred ------cCCCCccc----------ccccceEEEEECCCeEEEeCeEEeCCccCCCCCCCCceEEEEecCCcEEEEEeEEe
Confidence 00011100 001112223456788888888887632 222222 3577888888888
Q ss_pred cCCCCCCCCceeeeccccEEEEeeEEecCCceEEeCCCceeEEEEeeEEcCC---ce-EEEeecCCCCCCCcEEEEEEEe
Q 041993 188 ASGNSPNTDGIHVQLSSDVTILNTRISTGDDCVSIGPGTSNLWIENVACGPG---HG-ISIGSLGKDLNEAGVQNVTVKT 263 (391)
Q Consensus 188 ~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~nv~i~n~~~~~~---~g-i~igs~g~~~~~~~i~nI~i~n 263 (391)
...| -+-.. ..+-.++||.|...=|-|- |.....++||++..- .| +.- .+. .....-....|.|
T Consensus 193 G~QD-----TL~~~-~gR~yf~~CyIeG~VDFIF---G~g~a~Fe~C~I~s~~~~~g~ITA--~~R-~~~~~~~GfvF~~ 260 (359)
T PLN02634 193 GAQD-----TLCDD-AGRHYFKECYIEGSIDFIF---GNGRSMYKDCELHSIASRFGSIAA--HGR-TCPEEKTGFAFVG 260 (359)
T ss_pred cccc-----eeeeC-CCCEEEEeeEEcccccEEc---CCceEEEeccEEEEecCCCcEEEe--CCC-CCCCCCcEEEEEc
Confidence 7433 22222 3467788888887544332 245678888888642 23 221 111 1112235678888
Q ss_pred eEEeCCceEEEEEEecCCCCeeEEEEEEEEEEEec
Q 041993 264 VTFTGTQNGLRIKSWGRPSNGFARNILFRNAIMKN 298 (391)
Q Consensus 264 ~~~~~~~~gi~i~~~~~~~~g~i~nI~~~ni~~~~ 298 (391)
|++.+.. -+.+. ...+....++|.+..|.+
T Consensus 261 C~vtg~g-~~yLG----RPW~~yarvVf~~t~l~~ 290 (359)
T PLN02634 261 CRVTGTG-PLYVG----RAMGQYSRIVYAYTYFDA 290 (359)
T ss_pred CEEcCCc-ceEec----CCCCCcceEEEEecccCC
Confidence 8887652 22222 134456678888888765
No 45
>PLN02170 probable pectinesterase/pectinesterase inhibitor
Probab=97.83 E-value=0.0076 Score=61.11 Aligned_cols=205 Identities=12% Similarity=0.132 Sum_probs=113.7
Q ss_pred cHHHHHHHHHHHcC--CCCCcEEEEcCCeEEEeeeeeeCCccCccEEEEEccEEEeccCccccCCCCceEEEEeeeeeEE
Q 041993 42 STKAFLSAWANACG--SPRAATIYVPPGRFFLRNVAFQGPCKNNRITIRIDGTLVAPSDYRVIGNAGNWLFFQHVDGVTL 119 (391)
Q Consensus 42 ~t~aiq~Ai~~a~~--~~~g~~v~ip~G~Y~~~~~~l~~~~~s~~~~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~ni~I 119 (391)
|-.-||+||++++. ...--+++|.+|+|.-. +.++.. |+ +++|.++|. +...|
T Consensus 236 ~f~TIq~AI~a~~~~~~~~r~vI~Ik~GvY~E~-V~I~~~-k~-nItl~G~g~----------------------~~TiI 290 (529)
T PLN02170 236 THKTIGEALLSTSLESGGGRTVIYLKAGTYHEN-LNIPTK-QK-NVMLVGDGK----------------------GKTVI 290 (529)
T ss_pred chhhHHHHHHhcccccCCceEEEEEeCCeeEEE-EecCCC-Cc-eEEEEEcCC----------------------CCeEE
Confidence 56789999975422 12235789999999743 334211 25 888888762 11111
Q ss_pred eceeEeCCCccccccccCCCCCCCCCeeEEEEeecceEEEeEEEecCCc----eeEEEe-ceeeEEEEeEEEEcCCCCCC
Q 041993 120 NSGILDGQGTALWACKNSGKNCPSGATSMGFSNCNNIAINGLTSLNSQM----YHVVFN-GCNNVKLKGVKVLASGNSPN 194 (391)
Q Consensus 120 ~GG~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~n~~~----~~i~~~-~~~nv~i~n~~i~~~~~~~~ 194 (391)
.+..-.+.| | .+....-.....+++..+|++|.|... ..+-+. ..+...+++|.|....|
T Consensus 291 t~~~~~~~g---~---------~T~~SaTv~v~~~~F~a~nitf~Ntag~~~~QAVALrv~gDr~~fy~C~f~GyQD--- 355 (529)
T PLN02170 291 VGSRSNRGG---W---------TTYQTATVAAMGDGFIARDITFVNSAGPNSEQAVALRVGSDKSVVYRCSVEGYQD--- 355 (529)
T ss_pred EeCCcCCCC---C---------ccccceEEEEEcCCeEEEeeEEEecCCCCCCceEEEEecCCcEEEEeeeEeccCC---
Confidence 110000001 0 011223345568889999999988742 233332 36778888898887433
Q ss_pred CCceeeeccccEEEEeeEEecCCceEEeCCCceeEEEEeeEEcCCc----eEEEeecCCCCCCCcEEEEEEEeeEEeCCc
Q 041993 195 TDGIHVQLSSDVTILNTRISTGDDCVSIGPGTSNLWIENVACGPGH----GISIGSLGKDLNEAGVQNVTVKTVTFTGTQ 270 (391)
Q Consensus 195 ~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~nv~i~n~~~~~~~----gi~igs~g~~~~~~~i~nI~i~n~~~~~~~ 270 (391)
-+... +.+-..++|+|...=|-|- |.....++||.+..-. .-.|=..++ .+...-..+.|.||++.+..
T Consensus 356 --TLy~~-~~Rqyy~~C~I~GtVDFIF---G~a~avFq~C~I~~~~~~~~~g~ITAq~R-~~~~~~~Gfvf~~C~it~~~ 428 (529)
T PLN02170 356 --SLYTH-SKRQFYRETDITGTVDFIF---GNSAVVFQSCNIAARKPSGDRNYVTAQGR-SDPNQNTGISIHNCRITAES 428 (529)
T ss_pred --cceeC-CCCEEEEeeEEccccceec---ccceEEEeccEEEEecCCCCceEEEecCC-CCCCCCceEEEEeeEEecCC
Confidence 23322 3456778899887544332 3457888888886421 111211111 11223356788999987753
Q ss_pred eEEEEEEecCCCCeeEEEEEEEEEEEec
Q 041993 271 NGLRIKSWGRPSNGFARNILFRNAIMKN 298 (391)
Q Consensus 271 ~gi~i~~~~~~~~g~i~nI~~~ni~~~~ 298 (391)
-.++. ..+.....++|.+..|.+
T Consensus 429 -~~yLG----RPW~~ysrvVf~~t~l~~ 451 (529)
T PLN02170 429 -MTYLG----RPWKEYSRTVVMQSFIDG 451 (529)
T ss_pred -ceeee----CCCCCCceEEEEecccCC
Confidence 22222 133445678888887765
No 46
>PRK10531 acyl-CoA thioesterase; Provisional
Probab=97.83 E-value=0.0067 Score=59.74 Aligned_cols=117 Identities=14% Similarity=0.147 Sum_probs=63.5
Q ss_pred eEEEEeecceEEEeEEEecCCc--------eeEEEe-ceeeEEEEeEEEEcCCCCCCC------CceeeeccccEEEEee
Q 041993 147 SMGFSNCNNIAINGLTSLNSQM--------YHVVFN-GCNNVKLKGVKVLASGNSPNT------DGIHVQLSSDVTILNT 211 (391)
Q Consensus 147 ~i~~~~~~nv~i~~v~i~n~~~--------~~i~~~-~~~nv~i~n~~i~~~~~~~~~------DGi~~~~s~nv~I~n~ 211 (391)
.-.....+++..+|++|+|... ..+-+. ..+.+.+++|.|....|-... .+..........+++|
T Consensus 199 ATv~v~ad~F~a~NLTf~Ntag~~~~~~~~QAVALrv~GDra~fy~C~flG~QDTLy~~~~~~~~~~~~~~~gRqYf~~C 278 (422)
T PRK10531 199 AVFWSQNNGLQLQNLTIENTLGDSVDAGNHPAVALRTDGDKVQIENVNILGRQDTFFVTNSGVQNRLETDRQPRTYVKNS 278 (422)
T ss_pred EEEEEECCCEEEEeeEEEeCCCCCCCCCcceeEEEEEcCCcEEEEeeEEecccceeeeccccccccccccccccEEEEeC
Confidence 3455678999999999998853 222222 457788888888874431100 0000111235677888
Q ss_pred EEecCCceEEeCCCceeEEEEeeEEcCC------ceEEEeecCCCCCCCcEEEEEEEeeEEeCC
Q 041993 212 RISTGDDCVSIGPGTSNLWIENVACGPG------HGISIGSLGKDLNEAGVQNVTVKTVTFTGT 269 (391)
Q Consensus 212 ~i~~~dD~i~i~~~~~nv~i~n~~~~~~------~gi~igs~g~~~~~~~i~nI~i~n~~~~~~ 269 (391)
.|...=|-| + |.....++||++..- .|.-.-. . .....-....|.||++...
T Consensus 279 yIeG~VDFI-F--G~g~AvFenC~I~s~~~~~~~~g~ITA~-~--t~~~~~~GfvF~nCrit~~ 336 (422)
T PRK10531 279 YIEGDVDFV-F--GRGAVVFDNTEFRVVNSRTQQEAYVFAP-A--TLPNIYYGFLAINSRFNAS 336 (422)
T ss_pred EEeecccEE-c--cCceEEEEcCEEEEecCCCCCceEEEec-C--CCCCCCCEEEEECCEEecC
Confidence 888654432 2 245677888877541 1211100 0 0112234567788887764
No 47
>PLN02665 pectinesterase family protein
Probab=97.80 E-value=0.0065 Score=59.04 Aligned_cols=206 Identities=14% Similarity=0.111 Sum_probs=112.9
Q ss_pred cHHHHHHHHHHHcCCC-CCcEEEEcCCeEEEeeeeeeCCccCccEEEEEccEEEeccCccccCCCCceEEEEeeeeeEEe
Q 041993 42 STKAFLSAWANACGSP-RAATIYVPPGRFFLRNVAFQGPCKNNRITIRIDGTLVAPSDYRVIGNAGNWLFFQHVDGVTLN 120 (391)
Q Consensus 42 ~t~aiq~Ai~~a~~~~-~g~~v~ip~G~Y~~~~~~l~~~~~s~~~~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~ni~I~ 120 (391)
|-..||+||+++.... .-.+|+|.+|+|.- .+.++.. |+ +++|++++. + ...|...+
T Consensus 79 df~TIq~AIdaiP~~~~~r~vI~Ik~GvY~E-kV~Ip~~-kp-~Itl~G~~~-----~-------~tiIt~~~------- 136 (366)
T PLN02665 79 DFKTITDAIKSIPAGNTQRVIIDIGPGEYNE-KITIDRS-KP-FVTLYGSPG-----A-------MPTLTFDG------- 136 (366)
T ss_pred CccCHHHHHhhCcccCCceEEEEEeCcEEEE-EEEecCC-CC-EEEEEecCC-----C-------CCEEEECC-------
Confidence 5778999998653222 12467899999974 3444211 24 788888751 0 01111110
Q ss_pred ceeEeCCCccccccccCCCCCCCCCeeEEEEeecceEEEeEEEecCCc---------eeEEEe-ceeeEEEEeEEEEcCC
Q 041993 121 SGILDGQGTALWACKNSGKNCPSGATSMGFSNCNNIAINGLTSLNSQM---------YHVVFN-GCNNVKLKGVKVLASG 190 (391)
Q Consensus 121 GG~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~n~~~---------~~i~~~-~~~nv~i~n~~i~~~~ 190 (391)
.... + .+....-....++++..+|++|+|... ..+-+. ..+...+.||+|....
T Consensus 137 ------~a~~-~---------gT~~SaTv~v~a~~F~a~nitf~Nta~~~~~~~~g~QAVAl~v~gDka~f~~C~f~G~Q 200 (366)
T PLN02665 137 ------TAAK-Y---------GTVYSATLIVESDYFMAANIIIKNSAPRPDGKRKGAQAVAMRISGDKAAFYNCRFIGFQ 200 (366)
T ss_pred ------ccCC-C---------CCcceEEEEEECCCeEEEeeEEEeCCCCcCCCCCCcceEEEEEcCCcEEEEcceecccc
Confidence 0000 0 011123345568888888888888632 222222 3577888888888743
Q ss_pred CCCCCCceeeeccccEEEEeeEEecCCceEEeCCCceeEEEEeeEEcC-Cce--EEEeecCCCCCCCcEEEEEEEeeEEe
Q 041993 191 NSPNTDGIHVQLSSDVTILNTRISTGDDCVSIGPGTSNLWIENVACGP-GHG--ISIGSLGKDLNEAGVQNVTVKTVTFT 267 (391)
Q Consensus 191 ~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~nv~i~n~~~~~-~~g--i~igs~g~~~~~~~i~nI~i~n~~~~ 267 (391)
| -+... ..+-.++||.|...=|-|- |.....+++|++.. ..+ -.|=..+. .....-....|.||++.
T Consensus 201 D-----TL~~~-~gr~yf~~CyIeG~VDFIF---G~g~a~fe~C~i~s~~~~~~g~ITA~~r-~~~~~~~GfvF~~C~it 270 (366)
T PLN02665 201 D-----TLCDD-KGRHFFKDCYIEGTVDFIF---GSGKSLYLNTELHVVGDGGLRVITAQAR-NSEAEDSGFSFVHCKVT 270 (366)
T ss_pred c-----eeEeC-CCCEEEEeeEEeeccceec---cccceeeEccEEEEecCCCcEEEEcCCC-CCCCCCceEEEEeeEEe
Confidence 3 23222 3457788888887544332 34577888888864 222 11101111 11112345679999998
Q ss_pred CCceEEEEEEecCCCCeeEEEEEEEEEEEecC
Q 041993 268 GTQNGLRIKSWGRPSNGFARNILFRNAIMKNV 299 (391)
Q Consensus 268 ~~~~gi~i~~~~~~~~g~i~nI~~~ni~~~~~ 299 (391)
+....+.+. ........++|.+..|.+.
T Consensus 271 g~~~~~yLG----RpW~~ysrvVf~~t~m~~~ 298 (366)
T PLN02665 271 GTGTGAYLG----RAWMSRPRVVFAYTEMSSV 298 (366)
T ss_pred cCCCceeec----CCCCCcceEEEEccccCCe
Confidence 764233333 1334456788888888753
No 48
>PLN02671 pectinesterase
Probab=97.70 E-value=0.0098 Score=57.56 Aligned_cols=208 Identities=14% Similarity=0.172 Sum_probs=111.3
Q ss_pred cHHHHHHHHHHHcCCC-CCcEEEEcCCeEEEeeeeeeCCccCccEEEEEccEEEeccCccccCCCCceEEEEeeeeeEEe
Q 041993 42 STKAFLSAWANACGSP-RAATIYVPPGRFFLRNVAFQGPCKNNRITIRIDGTLVAPSDYRVIGNAGNWLFFQHVDGVTLN 120 (391)
Q Consensus 42 ~t~aiq~Ai~~a~~~~-~g~~v~ip~G~Y~~~~~~l~~~~~s~~~~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~ni~I~ 120 (391)
|-.-||+||+++.... .-.+|+|.+|+|.-. +.++.. |+ +++|.++|. . .++..|.
T Consensus 70 df~TIQ~AIdavP~~~~~~~~I~Ik~GvY~Ek-V~I~~~-k~-~Itl~G~g~-----~---------------~~~TvIt 126 (359)
T PLN02671 70 DSLTVQGAVDMVPDYNSQRVKIYILPGIYREK-VLVPKS-KP-YISFIGNES-----R---------------AGDTVIS 126 (359)
T ss_pred CccCHHHHHHhchhcCCccEEEEEeCceEEEE-EEECCC-CC-eEEEEecCC-----C---------------CCCEEEE
Confidence 5778999998653322 235889999999743 344211 24 788877651 0 0111111
Q ss_pred c----eeEeCCCccccccccCCCCCCCCCeeEEEEeecceEEEeEEEecCCc--------eeEEEe-ceeeEEEEeEEEE
Q 041993 121 S----GILDGQGTALWACKNSGKNCPSGATSMGFSNCNNIAINGLTSLNSQM--------YHVVFN-GCNNVKLKGVKVL 187 (391)
Q Consensus 121 G----G~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~n~~~--------~~i~~~-~~~nv~i~n~~i~ 187 (391)
. +....+|..| .+....-.....+++..+|++|.|... ..+-+. ..+...+.+|.|.
T Consensus 127 ~~~~a~~~~~~g~~~----------gT~~SaTv~v~a~~F~a~nitfeNt~~~~~g~~~~QAVALrv~gDra~f~~c~f~ 196 (359)
T PLN02671 127 WNDKASDLDSNGFEL----------GTYRTASVTIESDYFCATGITFENTVVAEPGGQGMQAVALRISGDKAFFYKVRVL 196 (359)
T ss_pred cCCcccccccCCccc----------cceeeEEEEEECCceEEEeeEEEcCCCCCCCCCCccEEEEEEcCccEEEEcceEe
Confidence 1 0011111100 111223345567888888888888721 222222 3577888888888
Q ss_pred cCCCCCCCCceeeeccccEEEEeeEEecCCceEEeCCCceeEEEEeeEEcCC---ce-EEEeecCCCCCCCcEEEEEEEe
Q 041993 188 ASGNSPNTDGIHVQLSSDVTILNTRISTGDDCVSIGPGTSNLWIENVACGPG---HG-ISIGSLGKDLNEAGVQNVTVKT 263 (391)
Q Consensus 188 ~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~nv~i~n~~~~~~---~g-i~igs~g~~~~~~~i~nI~i~n 263 (391)
...| -+-.. .-.-.++||.|...=|-|- |.....++||++..- .| |.--+.. ....-....|.|
T Consensus 197 G~QD-----TLy~~-~gR~yf~~CyIeG~VDFIF---G~g~A~Fe~C~I~s~~~~~G~ITA~~r~---~~~~~~GfvF~~ 264 (359)
T PLN02671 197 GAQD-----TLLDE-TGSHYFYQCYIQGSVDFIF---GNAKSLYQDCVIQSTAKRSGAIAAHHRD---SPTEDTGFSFVN 264 (359)
T ss_pred cccc-----ccEeC-CCcEEEEecEEEEeccEEe---cceeEEEeccEEEEecCCCeEEEeeccC---CCCCCccEEEEc
Confidence 7433 22212 2456778888887544332 235688888888642 23 2221110 112234577888
Q ss_pred eEEeCCceEEEEEEecCCCCeeEEEEEEEEEEEecC
Q 041993 264 VTFTGTQNGLRIKSWGRPSNGFARNILFRNAIMKNV 299 (391)
Q Consensus 264 ~~~~~~~~gi~i~~~~~~~~g~i~nI~~~ni~~~~~ 299 (391)
|++.+.. -+.+. . .......++|.|..|.+.
T Consensus 265 C~itg~g-~vyLG---R-PW~~yarvVf~~t~m~~~ 295 (359)
T PLN02671 265 CVINGTG-KIYLG---R-AWGNYSRTVYSNCFIADI 295 (359)
T ss_pred cEEccCc-cEEEe---C-CCCCCceEEEEecccCCe
Confidence 8887642 22332 1 233456788888877653
No 49
>PLN02916 pectinesterase family protein
Probab=97.66 E-value=0.0066 Score=61.26 Aligned_cols=209 Identities=13% Similarity=0.093 Sum_probs=112.1
Q ss_pred cHHHHHHHHHHHcC----CCCCcEEEEcCCeEEEeeeeeeCCccCccEEEEEccEEEeccCccccCCCCceEEEEeeeee
Q 041993 42 STKAFLSAWANACG----SPRAATIYVPPGRFFLRNVAFQGPCKNNRITIRIDGTLVAPSDYRVIGNAGNWLFFQHVDGV 117 (391)
Q Consensus 42 ~t~aiq~Ai~~a~~----~~~g~~v~ip~G~Y~~~~~~l~~~~~s~~~~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~ni 117 (391)
|-.-||+||+++.. ...-.+|+|.+|+|.- .+.++.. |+ +++|.++|. +..
T Consensus 198 ~f~TIq~AI~a~P~~~~~~~~r~vI~Ik~GvY~E-~V~I~~~-k~-~i~l~G~g~----------------------~~T 252 (502)
T PLN02916 198 THRTINQALAALSRMGKSRTNRVIIYVKAGVYNE-KVEIDRH-MK-NVMFVGDGM----------------------DKT 252 (502)
T ss_pred CccCHHHHHHhcccccCCCCceEEEEEeCceeeE-EEEecCC-Cc-eEEEEecCC----------------------CCc
Confidence 46689999976532 1122478999999974 3344211 24 788888761 011
Q ss_pred EEece--eEeCCCccccccccCCCCCCCCCeeEEEEeecceEEEeEEEecCCc----eeEEEe-ceeeEEEEeEEEEcCC
Q 041993 118 TLNSG--ILDGQGTALWACKNSGKNCPSGATSMGFSNCNNIAINGLTSLNSQM----YHVVFN-GCNNVKLKGVKVLASG 190 (391)
Q Consensus 118 ~I~GG--~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~n~~~----~~i~~~-~~~nv~i~n~~i~~~~ 190 (391)
.|.+. .-+|.+ +....-.....+++..+|++|.|... ..+-+. .++...+++|.|....
T Consensus 253 iIt~~~~~~~g~~--------------T~~SAT~~v~~~~F~A~nitf~Ntag~~~~QAVALrv~~D~a~fy~C~f~G~Q 318 (502)
T PLN02916 253 IITNNRNVPDGST--------------TYSSATFGVSGDGFWARDITFENTAGPHKHQAVALRVSSDLSVFYRCSFKGYQ 318 (502)
T ss_pred EEEeCCccCCCCc--------------ceeeEEEEEECCCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEeccC
Confidence 11110 001100 11122344567788888888887742 233333 4577888888888743
Q ss_pred CCCCCCceeeeccccEEEEeeEEecCCceEEeCCCceeEEEEeeEEcCCc-----eEEEeecCCCCCCCcEEEEEEEeeE
Q 041993 191 NSPNTDGIHVQLSSDVTILNTRISTGDDCVSIGPGTSNLWIENVACGPGH-----GISIGSLGKDLNEAGVQNVTVKTVT 265 (391)
Q Consensus 191 ~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~nv~i~n~~~~~~~-----gi~igs~g~~~~~~~i~nI~i~n~~ 265 (391)
| -+... +.+-..++|.|...=|-| .|.....++||.+.... .-.|=..+. .....-..+.|.||+
T Consensus 319 D-----TLy~~-~~Rqyy~~C~I~GtVDFI---FG~a~avFq~C~I~~~~~~~~~~g~ITAq~r-~~~~~~tGfvf~~C~ 388 (502)
T PLN02916 319 D-----TLFVH-SLRQFYRDCHIYGTIDFI---FGDAAVVFQNCDIFVRRPMDHQGNMITAQGR-DDPHENTGISIQHSR 388 (502)
T ss_pred c-----eeEeC-CCCEEEEecEEeccccee---ccCceEEEecCEEEEecCCCCCcceEEecCC-CCCCCCcEEEEEeeE
Confidence 3 23322 345677888888754433 23467888888885321 111111111 111223567788888
Q ss_pred EeCCceEEE----EEEecCCCCeeEEEEEEEEEEEecC
Q 041993 266 FTGTQNGLR----IKSWGRPSNGFARNILFRNAIMKNV 299 (391)
Q Consensus 266 ~~~~~~gi~----i~~~~~~~~g~i~nI~~~ni~~~~~ 299 (391)
+........ .+.+=|........++|.+..|.+.
T Consensus 389 it~~~~~~~~~g~~~~yLGRPW~~ysrvVf~~t~~~~~ 426 (502)
T PLN02916 389 VRASPEFEAVKGRFKSFLGRPWKKYSRTVFLKTDLDGL 426 (502)
T ss_pred EecCccccccccccceEeecCCCCCceEEEEecccCCe
Confidence 877532110 1111122444566777877777653
No 50
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=97.66 E-value=0.007 Score=62.21 Aligned_cols=151 Identities=17% Similarity=0.053 Sum_probs=78.7
Q ss_pred cHHHHHHHHHHHcCC--CCCcEEEEcCCeEEEeeeeeeCCccCccEEEEEccEEEeccCccccCCCCceEEEEeeeeeEE
Q 041993 42 STKAFLSAWANACGS--PRAATIYVPPGRFFLRNVAFQGPCKNNRITIRIDGTLVAPSDYRVIGNAGNWLFFQHVDGVTL 119 (391)
Q Consensus 42 ~t~aiq~Ai~~a~~~--~~g~~v~ip~G~Y~~~~~~l~~~~~s~~~~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~ni~I 119 (391)
+-.-||+||+++... .+--+|+|.+|+|.-. +.+... |. +++|.++|.= ...|... .+...
T Consensus 252 ~f~TIq~Av~a~p~~~~~~r~vI~vk~GvY~E~-V~i~~~-k~-~v~l~G~g~~------------~TiIt~~--~~~~~ 314 (553)
T PLN02708 252 CYKTVQEAVNAAPDNNGDRKFVIRIKEGVYEET-VRVPLE-KK-NVVFLGDGMG------------KTVITGS--LNVGQ 314 (553)
T ss_pred CccCHHHHHHhhhhccCCccEEEEEeCceEEee-eeecCC-Cc-cEEEEecCCC------------ceEEEec--CccCC
Confidence 567899999876331 2235889999999743 333211 24 8888887620 0011110 00000
Q ss_pred eceeEeCCCccccccccCCCCCCCCCeeEEEEeecceEEEeEEEecCCc----eeEEEe-ceeeEEEEeEEEEcCCCCCC
Q 041993 120 NSGILDGQGTALWACKNSGKNCPSGATSMGFSNCNNIAINGLTSLNSQM----YHVVFN-GCNNVKLKGVKVLASGNSPN 194 (391)
Q Consensus 120 ~GG~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~n~~~----~~i~~~-~~~nv~i~n~~i~~~~~~~~ 194 (391)
.| | .+....-.....+++..+|++|.|... ..+-+. .++.+.+.+|.|....|
T Consensus 315 ~g----------~---------~T~~saT~~v~~~~f~a~~it~~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G~QD--- 372 (553)
T PLN02708 315 PG----------I---------STYNTATVGVLGDGFMARDLTIQNTAGPDAHQAVAFRSDSDLSVIENCEFLGNQD--- 372 (553)
T ss_pred CC----------c---------CccceEEEEEEcCCeEEEeeEEEcCCCCCCCceEEEEecCCcEEEEeeeeeeccc---
Confidence 01 0 011112233467788888888887752 223332 35666777777766332
Q ss_pred CCceeeeccccEEEEeeEEecCCceEEeCCCceeEEEEeeEEc
Q 041993 195 TDGIHVQLSSDVTILNTRISTGDDCVSIGPGTSNLWIENVACG 237 (391)
Q Consensus 195 ~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~nv~i~n~~~~ 237 (391)
-+... +..-.+++|.|...=|-|- |.....++||.+.
T Consensus 373 --TLy~~-~~rq~y~~C~I~GtVDFIF---G~a~avfq~c~i~ 409 (553)
T PLN02708 373 --TLYAH-SLRQFYKSCRIQGNVDFIF---GNSAAVFQDCAIL 409 (553)
T ss_pred --cceeC-CCceEEEeeEEeecCCEEe---cCceEEEEccEEE
Confidence 22222 2345566777765433221 2346666777665
No 51
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=97.64 E-value=0.0013 Score=61.79 Aligned_cols=89 Identities=10% Similarity=0.051 Sum_probs=46.7
Q ss_pred CCCeeEEEEeecceEEEeEEEecCCceeEEEeceeeEEEEeEEEEcCCCCCCCCceeeeccccEEEEeeEEecCCceEEe
Q 041993 143 SGATSMGFSNCNNIAINGLTSLNSQMYHVVFNGCNNVKLKGVKVLASGNSPNTDGIHVQLSSDVTILNTRISTGDDCVSI 222 (391)
Q Consensus 143 ~~~~~i~~~~~~nv~i~~v~i~n~~~~~i~~~~~~nv~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i 222 (391)
.|...|.+.+++...|.+-.+.-- ..++....++...|++.+++... -|.|...+++..++++..+...-+.++
T Consensus 148 ~rGnGI~vyNa~~a~V~~ndisy~-rDgIy~~~S~~~~~~gnr~~~~R-----ygvHyM~t~~s~i~dn~s~~N~vG~AL 221 (408)
T COG3420 148 ERGNGIYVYNAPGALVVGNDISYG-RDGIYSDTSQHNVFKGNRFRDLR-----YGVHYMYTNDSRISDNSSRDNRVGYAL 221 (408)
T ss_pred hccCceEEEcCCCcEEEcCccccc-cceEEEcccccceecccchhhee-----eeEEEEeccCcEeecccccCCcceEEE
Confidence 345556666666666665554211 23455555555555555554422 245555555566655555554444554
Q ss_pred CCCceeEEEEeeEEcC
Q 041993 223 GPGTSNLWIENVACGP 238 (391)
Q Consensus 223 ~~~~~nv~i~n~~~~~ 238 (391)
-. ++.++|+|+.-++
T Consensus 222 My-s~~l~V~~nrS~G 236 (408)
T COG3420 222 MY-SDRLKVSDNRSSG 236 (408)
T ss_pred EE-eccEEEEcCcccC
Confidence 44 5566666665543
No 52
>PLN02933 Probable pectinesterase/pectinesterase inhibitor
Probab=97.59 E-value=0.013 Score=59.52 Aligned_cols=211 Identities=13% Similarity=0.145 Sum_probs=114.1
Q ss_pred cHHHHHHHHHHHcCCC-CCcEEEEcCCeEEEeeeeeeCCccCccEEEEEccEEEeccCccccCCCCceEEEEeeeeeEEe
Q 041993 42 STKAFLSAWANACGSP-RAATIYVPPGRFFLRNVAFQGPCKNNRITIRIDGTLVAPSDYRVIGNAGNWLFFQHVDGVTLN 120 (391)
Q Consensus 42 ~t~aiq~Ai~~a~~~~-~g~~v~ip~G~Y~~~~~~l~~~~~s~~~~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~ni~I~ 120 (391)
+=.-||+||+++.... .--+|+|.+|+|. ..+.++.. |. +++|.++|. + ...|... ++
T Consensus 229 ~f~TIq~Ai~a~P~~~~~r~vI~Ik~GvY~-E~V~I~~~-k~-~itl~G~g~-----~-------~TiIt~~--~~---- 287 (530)
T PLN02933 229 NFTTINEAVSAAPNSSETRFIIYIKGGEYF-ENVELPKK-KT-MIMFIGDGI-----G-------KTVIKAN--RS---- 287 (530)
T ss_pred CccCHHHHHHhchhcCCCcEEEEEcCceEE-EEEEecCC-Cc-eEEEEEcCC-----C-------CcEEEeC--Cc----
Confidence 4678999997653321 2357899999997 34455321 24 788888762 0 0011110 00
Q ss_pred ceeEeCCCccccccccCCCCCCCCCeeEEEEeecceEEEeEEEecCCc----eeEEEe-ceeeEEEEeEEEEcCCCCCCC
Q 041993 121 SGILDGQGTALWACKNSGKNCPSGATSMGFSNCNNIAINGLTSLNSQM----YHVVFN-GCNNVKLKGVKVLASGNSPNT 195 (391)
Q Consensus 121 GG~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~n~~~----~~i~~~-~~~nv~i~n~~i~~~~~~~~~ 195 (391)
..+| |. .....-.....+++..+|++|.|... ..+-+. ..+...+.+|.|....|
T Consensus 288 --~~dg-----~~---------T~~SaT~~v~a~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~QD---- 347 (530)
T PLN02933 288 --RIDG-----WS---------TFQTATVGVKGKGFIAKDISFVNYAGPAKHQAVALRSGSDHSAFYRCEFDGYQD---- 347 (530)
T ss_pred --cCCC-----Cc---------cccceEEEEECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEEeEEEeccc----
Confidence 0011 00 11122344568888899999987742 233333 36778888888887433
Q ss_pred CceeeeccccEEEEeeEEecCCceEEeCCCceeEEEEeeEEcCCc-----eEEEeecCCCCCCCcEEEEEEEeeEEeCCc
Q 041993 196 DGIHVQLSSDVTILNTRISTGDDCVSIGPGTSNLWIENVACGPGH-----GISIGSLGKDLNEAGVQNVTVKTVTFTGTQ 270 (391)
Q Consensus 196 DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~nv~i~n~~~~~~~-----gi~igs~g~~~~~~~i~nI~i~n~~~~~~~ 270 (391)
-+... +..-.+++|+|...=|-| .|.....++||.+..-. .-.|=..+. .....-..+.|.||.+....
T Consensus 348 -TLy~~-~~Rqyy~~C~IeGtVDFI---FG~a~avFq~C~i~~~~~~~~~~~~iTAq~r-~~~~~~tGfvf~~C~it~~~ 421 (530)
T PLN02933 348 -TLYVH-SAKQFYRECDIYGTIDFI---FGNAAVVFQNCSLYARKPNPNHKIAFTAQSR-NQSDQPTGISIISSRILAAP 421 (530)
T ss_pred -ccccC-CCceEEEeeEEeccccee---ccCceEEEeccEEEEeccCCCCceEEEecCC-CCCCCCceEEEEeeEEecCC
Confidence 22222 245678888888754432 23456888888886311 111111111 11122356788888887743
Q ss_pred eEEEE----EEecCCCCeeEEEEEEEEEEEecC
Q 041993 271 NGLRI----KSWGRPSNGFARNILFRNAIMKNV 299 (391)
Q Consensus 271 ~gi~i----~~~~~~~~g~i~nI~~~ni~~~~~ 299 (391)
..... +.+=|..+.....++|.+..|.+.
T Consensus 422 ~~~~~~~~~~~yLGRPW~~ysrvVf~~s~l~~~ 454 (530)
T PLN02933 422 DLIPVKENFKAYLGRPWRKYSRTVIIKSFIDDL 454 (530)
T ss_pred cccccccccceEeccCCCCCceEEEEecccCCe
Confidence 21111 111122444567788888888653
No 53
>PLN02713 Probable pectinesterase/pectinesterase inhibitor
Probab=97.58 E-value=0.012 Score=60.57 Aligned_cols=207 Identities=14% Similarity=0.115 Sum_probs=116.7
Q ss_pred cHHHHHHHHHHHcCC----CCCcEEEEcCCeEEEeeeeeeCCccCccEEEEEccEEEeccCccccCCCCceEEEEeeeee
Q 041993 42 STKAFLSAWANACGS----PRAATIYVPPGRFFLRNVAFQGPCKNNRITIRIDGTLVAPSDYRVIGNAGNWLFFQHVDGV 117 (391)
Q Consensus 42 ~t~aiq~Ai~~a~~~----~~g~~v~ip~G~Y~~~~~~l~~~~~s~~~~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~ni 117 (391)
+=.-||+||+++... .+-.+|+|++|+|.- .+.++.. |. +++|.++|. +..
T Consensus 261 ~f~TIq~Av~a~p~~~~~~~~~~vI~Ik~G~Y~E-~V~i~~~-k~-~i~l~G~g~----------------------~~T 315 (566)
T PLN02713 261 NFTTINDAVAAAPNNTDGSNGYFVIYVTAGVYEE-YVSIPKN-KK-YLMMIGDGI----------------------NQT 315 (566)
T ss_pred CCCCHHHHHHhhhcccCCCCceEEEEEcCcEEEE-EEEecCC-Cc-eEEEEecCC----------------------CCc
Confidence 467899999765321 112478999999974 3344211 24 788888761 111
Q ss_pred EEec--eeEeCCCccccccccCCCCCCCCCeeEEEEeecceEEEeEEEecCCc----eeEEEe-ceeeEEEEeEEEEcCC
Q 041993 118 TLNS--GILDGQGTALWACKNSGKNCPSGATSMGFSNCNNIAINGLTSLNSQM----YHVVFN-GCNNVKLKGVKVLASG 190 (391)
Q Consensus 118 ~I~G--G~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~n~~~----~~i~~~-~~~nv~i~n~~i~~~~ 190 (391)
.|.+ -..+|-+ +....-.....+++..+|++|.|... ..+-+. ..+...+.+|.|....
T Consensus 316 iIt~~~~~~~g~~--------------T~~SaT~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~Q 381 (566)
T PLN02713 316 VITGNRSVVDGWT--------------TFNSATFAVVGQNFVAVNITFRNTAGPAKHQAVALRSGADLSTFYSCSFEAYQ 381 (566)
T ss_pred EEEcCCcccCCCc--------------cccceeEEEECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeeccCC
Confidence 1111 0001100 01112334467899999999998642 233333 4678899999998743
Q ss_pred CCCCCCceeeeccccEEEEeeEEecCCceEEeCCCceeEEEEeeEEcCCc------e-EEEeecCCCCCCCcEEEEEEEe
Q 041993 191 NSPNTDGIHVQLSSDVTILNTRISTGDDCVSIGPGTSNLWIENVACGPGH------G-ISIGSLGKDLNEAGVQNVTVKT 263 (391)
Q Consensus 191 ~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~nv~i~n~~~~~~~------g-i~igs~g~~~~~~~i~nI~i~n 263 (391)
|-+... +..-.+++|.|...=|-| .|...+.++||.+.... + |.- .+. .+...-..+.|.|
T Consensus 382 -----DTLy~~-~~Rqyy~~C~I~GtVDFI---FG~a~avfq~C~i~~~~~~~~~~~~iTA--q~r-~~~~~~~G~vf~~ 449 (566)
T PLN02713 382 -----DTLYTH-SLRQFYRECDIYGTVDFI---FGNAAVVFQNCNLYPRLPMQGQFNTITA--QGR-TDPNQNTGTSIQN 449 (566)
T ss_pred -----cceEEC-CCCEEEEeeEEeccccee---cccceEEEeccEEEEecCCCCCcceeee--cCC-CCCCCCCEEEEEc
Confidence 333333 356788999998754433 23568899999986421 2 221 111 1122345788999
Q ss_pred eEEeCCceEE----EEEEecCCCCeeEEEEEEEEEEEecC
Q 041993 264 VTFTGTQNGL----RIKSWGRPSNGFARNILFRNAIMKNV 299 (391)
Q Consensus 264 ~~~~~~~~gi----~i~~~~~~~~g~i~nI~~~ni~~~~~ 299 (391)
|.+....... ..+.+=|..+.....++|.+..|.+.
T Consensus 450 c~i~~~~~~~~~~~~~~~yLGRPW~~ysr~V~~~s~~~~~ 489 (566)
T PLN02713 450 CTIKAADDLASSNYTVKTYLGRPWKEYSRTVVMQSYIDGL 489 (566)
T ss_pred CEEecCCcccccccccceeeecCCCCcceEEEEecccCCe
Confidence 9998753210 01111122344567788888888753
No 54
>PLN02745 Putative pectinesterase/pectinesterase inhibitor
Probab=97.57 E-value=0.015 Score=60.22 Aligned_cols=208 Identities=11% Similarity=0.066 Sum_probs=117.3
Q ss_pred cHHHHHHHHHHHcCCC-CCcEEEEcCCeEEEeeeeeeCCccCccEEEEEccEEEeccCccccCCCCceEEEEeeeeeEEe
Q 041993 42 STKAFLSAWANACGSP-RAATIYVPPGRFFLRNVAFQGPCKNNRITIRIDGTLVAPSDYRVIGNAGNWLFFQHVDGVTLN 120 (391)
Q Consensus 42 ~t~aiq~Ai~~a~~~~-~g~~v~ip~G~Y~~~~~~l~~~~~s~~~~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~ni~I~ 120 (391)
+-.-||+||+++.... .--+|+|.+|+|.-. +.++.. |. +++|.++|. + ...|... ++. -.
T Consensus 296 ~f~TIq~Ai~a~P~~~~~r~vI~Ik~GvY~E~-V~I~~~-k~-~i~l~G~g~-----~-------~TiIt~~--~~~-~~ 357 (596)
T PLN02745 296 NFTTISDALAAMPAKYEGRYVIYVKQGIYDET-VTVDKK-MV-NVTMYGDGS-----Q-------KTIVTGN--KNF-AD 357 (596)
T ss_pred CcccHHHHHHhccccCCceEEEEEeCCeeEEE-EEEcCC-Cc-eEEEEecCC-----C-------ceEEEEC--Ccc-cC
Confidence 4678999997653321 235789999999743 344211 24 888888862 0 0011110 000 00
Q ss_pred c-eeEeCCCccccccccCCCCCCCCCeeEEEEeecceEEEeEEEecCCc----eeEEEe-ceeeEEEEeEEEEcCCCCCC
Q 041993 121 S-GILDGQGTALWACKNSGKNCPSGATSMGFSNCNNIAINGLTSLNSQM----YHVVFN-GCNNVKLKGVKVLASGNSPN 194 (391)
Q Consensus 121 G-G~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~n~~~----~~i~~~-~~~nv~i~n~~i~~~~~~~~ 194 (391)
| +++ ...-.....+++..+|++|.|... ..+-+. .++...+.+|.|....|
T Consensus 358 g~~T~--------------------~saT~~v~~~~F~a~nitf~Ntag~~~~QAVAl~v~~Dr~~f~~c~~~G~QD--- 414 (596)
T PLN02745 358 GVRTF--------------------RTATFVALGEGFMAKSMGFRNTAGPEKHQAVAIRVQSDRSIFLNCRFEGYQD--- 414 (596)
T ss_pred CCcce--------------------eeEEEEEEcCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEeeccc---
Confidence 1 111 112334478889999999988642 233333 46889999999998543
Q ss_pred CCceeeeccccEEEEeeEEecCCceEEeCCCceeEEEEeeEEcCCc------e-EEEeecCCCCCCCcEEEEEEEeeEEe
Q 041993 195 TDGIHVQLSSDVTILNTRISTGDDCVSIGPGTSNLWIENVACGPGH------G-ISIGSLGKDLNEAGVQNVTVKTVTFT 267 (391)
Q Consensus 195 ~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~nv~i~n~~~~~~~------g-i~igs~g~~~~~~~i~nI~i~n~~~~ 267 (391)
-+... ..+-.+++|.|...=|-| + |.....++||.+.... + |.- .+ +.+...-..+.|.||++.
T Consensus 415 --TLy~~-~~Rqyy~~C~I~GtVDFI-F--G~a~avf~~C~i~~~~~~~~~~~~iTA--q~-r~~~~~~~Gfvf~~c~i~ 485 (596)
T PLN02745 415 --TLYAQ-THRQFYRSCVITGTIDFI-F--GDAAAIFQNCLIFVRKPLPNQQNTVTA--QG-RVDKFETTGIVLQNCRIA 485 (596)
T ss_pred --ccccC-CCcEEEEeeEEEeeccEE-e--cceeEEEEecEEEEecCCCCCCceEEe--cC-CCCCCCCceEEEEeeEEe
Confidence 22222 346788999999754532 2 3568899999986421 2 211 11 111223457889999998
Q ss_pred CCceEEE----EEEecCCCCeeEEEEEEEEEEEecC
Q 041993 268 GTQNGLR----IKSWGRPSNGFARNILFRNAIMKNV 299 (391)
Q Consensus 268 ~~~~gi~----i~~~~~~~~g~i~nI~~~ni~~~~~ 299 (391)
+...... .+.+=|..+.....++|.+..|.+.
T Consensus 486 ~~~~~~~~~~~~~~yLGRPW~~ysrvv~~~s~l~~~ 521 (596)
T PLN02745 486 PDEDLKPVKTEVKSYLGRPWKEFSRTIVMESTIEDV 521 (596)
T ss_pred cCccccccccccceeccCCCCCCccEEEEecccCCe
Confidence 7532111 1112222445567788888888653
No 55
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3.1.1.11 from EC (pectin methylesterase) catalyses the de-esterification of pectin into pectate and methanol. Pectin is one of the main components of the plant cell wall. In plants, pectinesterase plays an important role in cell wall metabolism during fruit ripening. In plant bacterial pathogens such as Erwinia carotovora and in fungal pathogens such as Aspergillus niger, pectinesterase is involved in maceration and soft-rotting of plant tissue. Plant pectinesterases are regulated by pectinesterase inhibitors, which are ineffective against microbial enzymes []. Prokaryotic and eukaryotic pectinesterases share a few regions of sequence similarity. The crystal structure of pectinesterase from Erwinia chrysanthemi revealed a beta-helix structure similar to that found in pectinolytic enzymes, though it is different from most structures of esterases []. The putative catalytic residues are in a similar location to those of the active site and substrate-binding cleft of pectate lyase.; GO: 0030599 pectinesterase activity, 0042545 cell wall modification, 0005618 cell wall; PDB: 1QJV_B 1XG2_A 1GQ8_A 2NTQ_A 2NTP_A 2NT9_A 2NT6_B 2NSP_B 2NTB_A 2NST_A ....
Probab=97.55 E-value=0.0052 Score=58.46 Aligned_cols=48 Identities=21% Similarity=0.304 Sum_probs=28.2
Q ss_pred ccHHHHHHHHHHHcCCC-CCcEEEEcCCeEEEeeeeeeCCccCccEEEEEcc
Q 041993 41 DSTKAFLSAWANACGSP-RAATIYVPPGRFFLRNVAFQGPCKNNRITIRIDG 91 (391)
Q Consensus 41 d~t~aiq~Ai~~a~~~~-~g~~v~ip~G~Y~~~~~~l~~~~~s~~~~l~~~G 91 (391)
-|=.-||+||+++.... ..-+|+|.+|+|.-. +.+... |+ +++|.+++
T Consensus 10 gdf~TIq~Aida~p~~~~~~~~I~I~~G~Y~E~-V~i~~~-k~-~v~l~G~~ 58 (298)
T PF01095_consen 10 GDFTTIQAAIDAAPDNNTSRYTIFIKPGTYREK-VTIPRS-KP-NVTLIGEG 58 (298)
T ss_dssp SSBSSHHHHHHHS-SSSSS-EEEEE-SEEEE---EEE-ST-ST-TEEEEES-
T ss_pred CCccCHHHHHHhchhcCCceEEEEEeCeeEccc-cEeccc-cc-eEEEEecC
Confidence 35678999998753221 234899999999743 444321 24 78888775
No 56
>PLN02468 putative pectinesterase/pectinesterase inhibitor
Probab=97.54 E-value=0.012 Score=60.67 Aligned_cols=209 Identities=14% Similarity=0.102 Sum_probs=115.4
Q ss_pred cHHHHHHHHHHHcCC-CCCcEEEEcCCeEEEeeeeeeCCccCccEEEEEccEEEeccCccccCCCCceEEEEeeeeeEEe
Q 041993 42 STKAFLSAWANACGS-PRAATIYVPPGRFFLRNVAFQGPCKNNRITIRIDGTLVAPSDYRVIGNAGNWLFFQHVDGVTLN 120 (391)
Q Consensus 42 ~t~aiq~Ai~~a~~~-~~g~~v~ip~G~Y~~~~~~l~~~~~s~~~~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~ni~I~ 120 (391)
+-.-||+||+++... ..-.+|+|.+|+|.- .+.+... |. +++|.++|. + ...|.. ..+
T Consensus 269 ~f~tI~~Av~a~p~~~~~~~vI~ik~GvY~E-~V~i~~~-k~-~i~~~G~g~-----~-------~tiIt~--~~~---- 327 (565)
T PLN02468 269 KYKTISEALKDVPEKSEKRTIIYVKKGVYFE-NVRVEKK-KW-NVVMVGDGM-----S-------KTIVSG--SLN---- 327 (565)
T ss_pred CccCHHHHHHhchhcCCCcEEEEEeCCceEE-EEEecCC-CC-eEEEEecCC-----C-------CCEEEe--CCc----
Confidence 457899999765332 223588999999974 3344211 24 788888761 0 001110 000
Q ss_pred ceeEeCCCccccccccCCCCCCCCCeeEEEEeecceEEEeEEEecCCc----eeEEEe-ceeeEEEEeEEEEcCCCCCCC
Q 041993 121 SGILDGQGTALWACKNSGKNCPSGATSMGFSNCNNIAINGLTSLNSQM----YHVVFN-GCNNVKLKGVKVLASGNSPNT 195 (391)
Q Consensus 121 GG~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~n~~~----~~i~~~-~~~nv~i~n~~i~~~~~~~~~ 195 (391)
..||.. +-...-.....+++..++++|.|... ..+-+. .++...+.+|.|....|
T Consensus 328 --~~dg~~--------------t~~saT~~v~~~~f~a~~itf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G~QD---- 387 (565)
T PLN02468 328 --FVDGTP--------------TFSTATFAVFGKGFMARDMGFRNTAGPIKHQAVALMSSADLSVFYRCTMDAFQD---- 387 (565)
T ss_pred --cCCCCC--------------ccceeeeeEECCCeEEEEEEEEeCCCCCCCceEEEEEcCCcEEEEEeEEEeccc----
Confidence 001110 01112234457888999999987743 233333 46788999999987543
Q ss_pred CceeeeccccEEEEeeEEecCCceEEeCCCceeEEEEeeEEcCC------ce-EEEeecCCCCCCCcEEEEEEEeeEEeC
Q 041993 196 DGIHVQLSSDVTILNTRISTGDDCVSIGPGTSNLWIENVACGPG------HG-ISIGSLGKDLNEAGVQNVTVKTVTFTG 268 (391)
Q Consensus 196 DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~nv~i~n~~~~~~------~g-i~igs~g~~~~~~~i~nI~i~n~~~~~ 268 (391)
-+... +..-..++|.|...=|-| .|.....++||.+... .+ |.- .+. .+...-..+.|.||++..
T Consensus 388 -TLy~~-~~rq~y~~C~I~GtvDFI---FG~a~avfq~c~i~~~~~~~~~~~~iTA--~~r-~~~~~~~G~vf~~c~i~~ 459 (565)
T PLN02468 388 -TLYAH-AQRQFYRECNIYGTVDFI---FGNSAVVFQNCNILPRRPMKGQQNTITA--QGR-TDPNQNTGISIQNCTILP 459 (565)
T ss_pred -hhccC-CCceEEEeeEEeccccee---eccceEEEeccEEEEecCCCCCCceEEe--cCC-CCCCCCceEEEEccEEec
Confidence 22222 345678899998754433 2356888999998632 12 221 111 112234568899999987
Q ss_pred CceEEEEEEecCCCCeeEEEEEEEEEEEecC
Q 041993 269 TQNGLRIKSWGRPSNGFARNILFRNAIMKNV 299 (391)
Q Consensus 269 ~~~gi~i~~~~~~~~g~i~nI~~~ni~~~~~ 299 (391)
....-..+.+=|..+.....++|.+..|.+.
T Consensus 460 ~~~~~~~~~yLGRPW~~~sr~v~~~s~~~~~ 490 (565)
T PLN02468 460 LGDLTSVKTFLGRPWKNYSTTVIMHSMMGSL 490 (565)
T ss_pred CCCccccceeeecCCCCCceEEEEecccCCe
Confidence 5421111211122444566678888877653
No 57
>PLN02201 probable pectinesterase/pectinesterase inhibitor
Probab=97.54 E-value=0.021 Score=58.09 Aligned_cols=209 Identities=12% Similarity=0.106 Sum_probs=115.1
Q ss_pred cHHHHHHHHHHHcCC-CCCcEEEEcCCeEEEeeeeeeCCccCccEEEEEccEEEeccCccccCCCCceEEEEeeeeeEEe
Q 041993 42 STKAFLSAWANACGS-PRAATIYVPPGRFFLRNVAFQGPCKNNRITIRIDGTLVAPSDYRVIGNAGNWLFFQHVDGVTLN 120 (391)
Q Consensus 42 ~t~aiq~Ai~~a~~~-~~g~~v~ip~G~Y~~~~~~l~~~~~s~~~~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~ni~I~ 120 (391)
+=.-||+||+++... ..-.+|+|.+|+|.-. +.++.. |. +++|.++|. + ...|... ++
T Consensus 217 ~f~TIq~Ai~a~P~~~~~r~vI~Ik~GvY~E~-V~I~~~-k~-~i~l~G~g~-----~-------~TiIt~~--~~---- 275 (520)
T PLN02201 217 NFTTIMDAVLAAPDYSTKRYVIYIKKGVYLEN-VEIKKK-KW-NIMMVGDGI-----D-------ATVITGN--RS---- 275 (520)
T ss_pred CccCHHHHHHhchhcCCCcEEEEEeCceeEEE-EEecCC-Cc-eEEEEecCC-----C-------CcEEEeC--Cc----
Confidence 577899999765322 2235889999999643 444311 24 788888762 0 0011110 00
Q ss_pred ceeEeCCCccccccccCCCCCCCCCeeEEEEeecceEEEeEEEecCCc----eeEEEe-ceeeEEEEeEEEEcCCCCCCC
Q 041993 121 SGILDGQGTALWACKNSGKNCPSGATSMGFSNCNNIAINGLTSLNSQM----YHVVFN-GCNNVKLKGVKVLASGNSPNT 195 (391)
Q Consensus 121 GG~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~n~~~----~~i~~~-~~~nv~i~n~~i~~~~~~~~~ 195 (391)
..+|.+ +....-.....+++..+|++|.|... ..+-+. ..+...+++|.|....
T Consensus 276 --~~~g~~--------------T~~SAT~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~G~Q----- 334 (520)
T PLN02201 276 --FIDGWT--------------TFRSATFAVSGRGFIARDITFQNTAGPEKHQAVALRSDSDLSVFYRCAMRGYQ----- 334 (520)
T ss_pred --cCCCCc--------------ccceEEEEEECCCeEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeeeeccC-----
Confidence 001100 01112344568888889999988743 233333 3578888899888743
Q ss_pred CceeeeccccEEEEeeEEecCCceEEeCCCceeEEEEeeEEcCC------ce-EEEeecCCCCCCCcEEEEEEEeeEEeC
Q 041993 196 DGIHVQLSSDVTILNTRISTGDDCVSIGPGTSNLWIENVACGPG------HG-ISIGSLGKDLNEAGVQNVTVKTVTFTG 268 (391)
Q Consensus 196 DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~nv~i~n~~~~~~------~g-i~igs~g~~~~~~~i~nI~i~n~~~~~ 268 (391)
|-+... ...-..++|+|...=|-|- |.....++||++..- .| |.--+ . .+...-....|.||.+.+
T Consensus 335 DTLy~~-~~Rqyy~~C~I~GtVDFIF---G~a~avf~~C~i~~~~~~~~~~~~iTAq~--r-~~~~~~~Gfvf~~C~it~ 407 (520)
T PLN02201 335 DTLYTH-TMRQFYRECRITGTVDFIF---GDATAVFQNCQILAKKGLPNQKNTITAQG--R-KDPNQPTGFSIQFSNISA 407 (520)
T ss_pred CeeEeC-CCCEEEEeeEEeecccEEe---cCceEEEEccEEEEecCCCCCCceEEecC--C-CCCCCCcEEEEEeeEEec
Confidence 323332 3456778899987544332 345788899988641 12 22211 1 112234568889999876
Q ss_pred CceEEE----EEEecCCCCeeEEEEEEEEEEEecC
Q 041993 269 TQNGLR----IKSWGRPSNGFARNILFRNAIMKNV 299 (391)
Q Consensus 269 ~~~gi~----i~~~~~~~~g~i~nI~~~ni~~~~~ 299 (391)
...... .+.+=|..+.....++|.+..|.+.
T Consensus 408 ~~~~~~~~~~~~~yLGRPW~~ysrvv~~~t~l~~~ 442 (520)
T PLN02201 408 DTDLLPYLNTTATYLGRPWKLYSRTVFMQNYMSDA 442 (520)
T ss_pred CccccccccccceEeecCCCCCceEEEEecCcCCe
Confidence 432110 0111122445567788888888753
No 58
>PLN02304 probable pectinesterase
Probab=97.50 E-value=0.026 Score=55.01 Aligned_cols=203 Identities=14% Similarity=0.148 Sum_probs=107.0
Q ss_pred cHHHHHHHHHHHcCC-CCCcEEEEcCCeEEEeeeeeeCCccCccEEEEEcc---EEEeccCccccCCCCceEEEEeeeee
Q 041993 42 STKAFLSAWANACGS-PRAATIYVPPGRFFLRNVAFQGPCKNNRITIRIDG---TLVAPSDYRVIGNAGNWLFFQHVDGV 117 (391)
Q Consensus 42 ~t~aiq~Ai~~a~~~-~~g~~v~ip~G~Y~~~~~~l~~~~~s~~~~l~~~G---~l~~~~~~~~~~~~~~~i~~~~~~ni 117 (391)
|=.-||+||+++... ..-.+|+|.+|+|.- .+.++.. |+ +++|+++| ++..-.+. ..
T Consensus 86 df~TIQ~AIdavP~~~~~r~vI~Ik~GvY~E-kV~Ip~~-K~-~Itl~G~g~~~TiIt~~~~---------------a~- 146 (379)
T PLN02304 86 NFTTVQSAVDAVGNFSQKRNVIWINSGIYYE-KVTVPKT-KP-NITFQGQGFDSTAIAWNDT---------------AK- 146 (379)
T ss_pred CccCHHHHHhhCcccCCCcEEEEEeCeEeEE-EEEECCC-CC-cEEEEecCCCCcEEEccCc---------------cc-
Confidence 467899999865322 123578999999963 3344211 35 89998876 21110000 00
Q ss_pred EEeceeEeCCCccccccccCCCCCCCCCeeEEEEeecceEEEeEEEecCCc---------eeEEEe-ceeeEEEEeEEEE
Q 041993 118 TLNSGILDGQGTALWACKNSGKNCPSGATSMGFSNCNNIAINGLTSLNSQM---------YHVVFN-GCNNVKLKGVKVL 187 (391)
Q Consensus 118 ~I~GG~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~n~~~---------~~i~~~-~~~nv~i~n~~i~ 187 (391)
-.+|++ ...-.....+++..+|++|.|... ..+-+. ..+...+.+|.|.
T Consensus 147 -~~~gT~--------------------~SaTv~v~a~~F~a~nITf~Nta~~~~~g~~~~QAVAL~v~gDra~fy~C~f~ 205 (379)
T PLN02304 147 -SANGTF--------------------YSASVQVFASNFIAKNISFMNVAPIPKPGDVGAQAVAIRIAGDQAAFWGCGFF 205 (379)
T ss_pred -CCCCcc--------------------ceEEEEEECCCeEEEeeEEEecCCCCCCCCCCccEEEEEecCCcEEEEeceEe
Confidence 000111 112233456788888888887641 223222 3577888888888
Q ss_pred cCCCCCCCCceeeeccccEEEEeeEEecCCceEEeCCCceeEEEEeeEEcCC-ceEE------EeecC--CCCCCCcEEE
Q 041993 188 ASGNSPNTDGIHVQLSSDVTILNTRISTGDDCVSIGPGTSNLWIENVACGPG-HGIS------IGSLG--KDLNEAGVQN 258 (391)
Q Consensus 188 ~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~nv~i~n~~~~~~-~gi~------igs~g--~~~~~~~i~n 258 (391)
...| -+... ...-.++||.|...=|-|- |.....+++|++..- ..+. -|... .+.....-..
T Consensus 206 G~QD-----TLy~~-~gR~Yf~~CyIeG~VDFIF---G~g~A~Fe~C~I~s~~~~~~~g~~~~~G~ITA~~Rt~~~~~~G 276 (379)
T PLN02304 206 GAQD-----TLHDD-RGRHYFKDCYIQGSIDFIF---GDARSLYENCRLISMANPVPPGSKSINGAVTAHGRTSKDENTG 276 (379)
T ss_pred cccc-----eeEeC-CCCEEEEeeEEcccccEEe---ccceEEEEccEEEEecCCcccccccCceEEEecCCCCCCCCce
Confidence 7433 22222 3456778888886544332 235678888887631 1110 01110 0011122345
Q ss_pred EEEEeeEEeCCceEEEEEEecCCCCeeEEEEEEEEEEEec
Q 041993 259 VTVKTVTFTGTQNGLRIKSWGRPSNGFARNILFRNAIMKN 298 (391)
Q Consensus 259 I~i~n~~~~~~~~gi~i~~~~~~~~g~i~nI~~~ni~~~~ 298 (391)
..|.||.+.+.. -+.+. ..+.....++|.+..|.+
T Consensus 277 fvF~~C~itg~g-~vyLG----RPW~pysrvVf~~t~m~~ 311 (379)
T PLN02304 277 FSFVNCTIGGTG-RIWLG----RAWRPYSRVVFAYTSMTD 311 (379)
T ss_pred EEEECCEEccCc-ceeec----CCCCCcceEEEEecccCC
Confidence 678888887642 22222 133445677777777765
No 59
>PLN02484 probable pectinesterase/pectinesterase inhibitor
Probab=97.45 E-value=0.028 Score=58.26 Aligned_cols=208 Identities=14% Similarity=0.148 Sum_probs=116.8
Q ss_pred cHHHHHHHHHHHcCCC-CCcEEEEcCCeEEEeeeeeeCCccCccEEEEEccEEEeccCccccCCCCceEEEEeeeeeEEe
Q 041993 42 STKAFLSAWANACGSP-RAATIYVPPGRFFLRNVAFQGPCKNNRITIRIDGTLVAPSDYRVIGNAGNWLFFQHVDGVTLN 120 (391)
Q Consensus 42 ~t~aiq~Ai~~a~~~~-~g~~v~ip~G~Y~~~~~~l~~~~~s~~~~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~ni~I~ 120 (391)
|-.-||+||+++.... .--+|+|.+|+|.-..+.+... |. +++|.++|. +...|+
T Consensus 283 ~f~TIq~Ai~a~P~~~~~r~vI~Ik~G~Y~E~~v~i~~~-k~-ni~l~G~g~----------------------~~TiIt 338 (587)
T PLN02484 283 TFKTISEAIKKAPEHSSRRTIIYVKAGRYEENNLKVGRK-KT-NLMFIGDGK----------------------GKTVIT 338 (587)
T ss_pred CcccHHHHHHhccccCCCcEEEEEeCCEEEEEEEEECCC-Cc-eEEEEecCC----------------------CCeEEe
Confidence 4678999997653322 2357899999997644455321 34 888888761 111111
Q ss_pred ce--eEeCCCccccccccCCCCCCCCCeeEEEEeecceEEEeEEEecCCc----eeEEEe-ceeeEEEEeEEEEcCCCCC
Q 041993 121 SG--ILDGQGTALWACKNSGKNCPSGATSMGFSNCNNIAINGLTSLNSQM----YHVVFN-GCNNVKLKGVKVLASGNSP 193 (391)
Q Consensus 121 GG--~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~n~~~----~~i~~~-~~~nv~i~n~~i~~~~~~~ 193 (391)
++ ..++.+ +-...-.....+++..+|++|.|... ..+-+. ..+...+.+|.|....|
T Consensus 339 ~~~~~~~~~~--------------t~~saT~~v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~G~QD-- 402 (587)
T PLN02484 339 GGKSIFDNLT--------------TFHTASFAATGAGFIARDMTFENWAGPAKHQAVALRVGADHAVVYRCNIIGYQD-- 402 (587)
T ss_pred cCCcccCCCc--------------ccceEEEEEEcCCEEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeEeccCc--
Confidence 10 000000 01112334467888888888887643 233333 36788899999987443
Q ss_pred CCCceeeeccccEEEEeeEEecCCceEEeCCCceeEEEEeeEEcCC------ce-EEEeecCCCCCCCcEEEEEEEeeEE
Q 041993 194 NTDGIHVQLSSDVTILNTRISTGDDCVSIGPGTSNLWIENVACGPG------HG-ISIGSLGKDLNEAGVQNVTVKTVTF 266 (391)
Q Consensus 194 ~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~nv~i~n~~~~~~------~g-i~igs~g~~~~~~~i~nI~i~n~~~ 266 (391)
-+... +..-.+++|.|...=|-| .|.....++||.+..- .| |.- .+. .+...-..+.|.||.+
T Consensus 403 ---TLy~~-~~Rqyy~~C~I~GtVDFI---FG~a~avfq~C~i~~~~~~~~~~~~ITA--q~r-~~~~~~~G~vf~~c~i 472 (587)
T PLN02484 403 ---TLYVH-SNRQFFRECDIYGTVDFI---FGNAAVVLQNCSIYARKPMAQQKNTITA--QNR-KDPNQNTGISIHACRI 472 (587)
T ss_pred ---ccccC-CCcEEEEecEEEecccee---cccceeEEeccEEEEecCCCCCceEEEe--cCC-CCCCCCcEEEEEeeEE
Confidence 22222 345678899998754432 2356788999998642 12 221 111 1112345788999999
Q ss_pred eCCceEE----EEEEecCCCCeeEEEEEEEEEEEecC
Q 041993 267 TGTQNGL----RIKSWGRPSNGFARNILFRNAIMKNV 299 (391)
Q Consensus 267 ~~~~~gi----~i~~~~~~~~g~i~nI~~~ni~~~~~ 299 (391)
.+..... .++.+=|..+.....++|.+..|.+.
T Consensus 473 ~~~~~~~~~~~~~~~yLGRPW~~ysrvV~~~s~i~~~ 509 (587)
T PLN02484 473 LAASDLAASKGSFPTYLGRPWKLYSRTVYMMSYMGDH 509 (587)
T ss_pred ecCCccccccCccceeccCCCCCCceEEEEecccCCe
Confidence 8753210 11111122445567788888888754
No 60
>PLN02995 Probable pectinesterase/pectinesterase inhibitor
Probab=97.45 E-value=0.022 Score=58.35 Aligned_cols=211 Identities=13% Similarity=0.091 Sum_probs=115.9
Q ss_pred cHHHHHHHHHHHcC---CCCCcEEEEcCCeEEEeeeeeeCCccCccEEEEEccEEEeccCccccCCCCceEEEEeeeeeE
Q 041993 42 STKAFLSAWANACG---SPRAATIYVPPGRFFLRNVAFQGPCKNNRITIRIDGTLVAPSDYRVIGNAGNWLFFQHVDGVT 118 (391)
Q Consensus 42 ~t~aiq~Ai~~a~~---~~~g~~v~ip~G~Y~~~~~~l~~~~~s~~~~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~ni~ 118 (391)
|-.-||+||+++.. ..+-.+|+|.+|+|.-. +.++.. |+ +++|.++|. +...
T Consensus 234 ~f~TIq~Ai~a~p~~~~~~~r~vI~Ik~G~Y~E~-V~i~~~-k~-~i~l~G~g~----------------------~~Tv 288 (539)
T PLN02995 234 HFNTVQAAIDVAGRRKVTSGRFVIYVKRGIYQEN-INVRLN-ND-DIMLVGDGM----------------------RSTI 288 (539)
T ss_pred CccCHHHHHHhcccccCCCceEEEEEeCCEeEEE-EEecCC-CC-cEEEEEcCC----------------------CCeE
Confidence 56789999976532 12235789999999754 333211 35 899988872 0011
Q ss_pred EeceeEeCCCccccccccCCCCCCCCCeeEEEEeecceEEEeEEEecCCc----eeEEEe-ceeeEEEEeEEEEcCCCCC
Q 041993 119 LNSGILDGQGTALWACKNSGKNCPSGATSMGFSNCNNIAINGLTSLNSQM----YHVVFN-GCNNVKLKGVKVLASGNSP 193 (391)
Q Consensus 119 I~GG~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~n~~~----~~i~~~-~~~nv~i~n~~i~~~~~~~ 193 (391)
|.+..--+.+ | .+....-.....+++..+|++|.|... ..+-+. ..+...+++|.|....|
T Consensus 289 It~~~~~~~~--~----------~T~~SaT~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~Dr~~f~~c~~~G~QD-- 354 (539)
T PLN02995 289 ITGGRSVKGG--Y----------TTYNSATAGIEGLHFIAKGITFRNTAGPAKGQAVALRSSSDLSIFYKCSIEGYQD-- 354 (539)
T ss_pred EEeCCccCCC--C----------cccceEEEEEECCCeEEEeeEEEeCCCCCCCceEEEEEcCCceeEEcceEecccc--
Confidence 1110000000 0 011112233467888888888887743 233333 36788899999987543
Q ss_pred CCCceeeeccccEEEEeeEEecCCceEEeCCCceeEEEEeeEEcCCc---e--EEEeecCCCCCCCcEEEEEEEeeEEeC
Q 041993 194 NTDGIHVQLSSDVTILNTRISTGDDCVSIGPGTSNLWIENVACGPGH---G--ISIGSLGKDLNEAGVQNVTVKTVTFTG 268 (391)
Q Consensus 194 ~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~nv~i~n~~~~~~~---g--i~igs~g~~~~~~~i~nI~i~n~~~~~ 268 (391)
-+... +..-..++|.|...=|-|- |.....++||++.... | -.|=..+. .....-..+.|.||++.+
T Consensus 355 ---TLy~~-~~Rqyy~~C~I~GtVDFIF---G~a~avf~~C~i~~~~~~~~~~~~iTA~~r-~~~~~~~G~vf~~c~i~~ 426 (539)
T PLN02995 355 ---TLMVH-SQRQFYRECYIYGTVDFIF---GNAAAVFQNCIILPRRPLKGQANVITAQGR-ADPFQNTGISIHNSRILP 426 (539)
T ss_pred ---hhccC-CCceEEEeeEEeeccceEe---cccceEEeccEEEEecCCCCCcceEecCCC-CCCCCCceEEEEeeEEec
Confidence 22222 3456888999987544332 3457888999886421 1 11211111 111234578899999987
Q ss_pred CceEE----EEEEecCCCCeeEEEEEEEEEEEecC
Q 041993 269 TQNGL----RIKSWGRPSNGFARNILFRNAIMKNV 299 (391)
Q Consensus 269 ~~~gi----~i~~~~~~~~g~i~nI~~~ni~~~~~ 299 (391)
..... ..+.+=|..+.....++|.+..|.+.
T Consensus 427 ~~~~~~~~~~~~~yLGRPW~~ysrvv~~~t~~~~~ 461 (539)
T PLN02995 427 APDLKPVVRTVKTYMGRPWMKFSRTVVLQTYLDNV 461 (539)
T ss_pred CCcccccccccceeccCCCCCCcceEEEeccccCc
Confidence 53211 01111122444566788888888654
No 61
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional
Probab=97.41 E-value=0.033 Score=57.18 Aligned_cols=207 Identities=13% Similarity=0.114 Sum_probs=117.9
Q ss_pred cHHHHHHHHHHHcCCCC----CcEEEEcCCeEEEeeeeeeCCccCccEEEEEccEEEeccCccccCCCCceEEEEeeeee
Q 041993 42 STKAFLSAWANACGSPR----AATIYVPPGRFFLRNVAFQGPCKNNRITIRIDGTLVAPSDYRVIGNAGNWLFFQHVDGV 117 (391)
Q Consensus 42 ~t~aiq~Ai~~a~~~~~----g~~v~ip~G~Y~~~~~~l~~~~~s~~~~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~ni 117 (391)
+=.-||+||+++..... --+|+|.+|+|.- .+.+... |. +++|.++|. +..
T Consensus 234 ~f~TI~~Av~a~p~~~~~~~~r~vI~vk~G~Y~E-~V~i~~~-k~-~i~l~G~g~----------------------~~t 288 (538)
T PLN03043 234 NFTTITDAIAAAPNNSKPEDGYFVIYAREGYYEE-YVVVPKN-KK-NIMLIGDGI----------------------NKT 288 (538)
T ss_pred CCcCHHHHHHhccccCCCCcceEEEEEcCeeeEE-EEEeCCC-CC-cEEEEecCC----------------------CCe
Confidence 46789999976533211 2478999999964 3344211 24 888888761 111
Q ss_pred EEec--eeEeCCCccccccccCCCCCCCCCeeEEEEeecceEEEeEEEecCCc----eeEEEe-ceeeEEEEeEEEEcCC
Q 041993 118 TLNS--GILDGQGTALWACKNSGKNCPSGATSMGFSNCNNIAINGLTSLNSQM----YHVVFN-GCNNVKLKGVKVLASG 190 (391)
Q Consensus 118 ~I~G--G~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~n~~~----~~i~~~-~~~nv~i~n~~i~~~~ 190 (391)
.|.+ -..|| |. +....-.....+++..+|++|+|... ..+-+. .++...+.+|.|....
T Consensus 289 iIt~~~~~~dg-----~~---------T~~saT~~v~~~~F~a~~it~~Ntag~~~~QAvAlrv~~D~~~f~~C~~~gyQ 354 (538)
T PLN03043 289 IITGNHSVVDG-----WT---------TFNSSTFAVSGERFVAVDVTFRNTAGPEKHQAVALRNNADLSTFYRCSFEGYQ 354 (538)
T ss_pred EEEeCCccCCC-----Cc---------cccceEEEEECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEeccC
Confidence 1111 00011 10 11123345567899999999998643 234333 4577899999999754
Q ss_pred CCCCCCceeeeccccEEEEeeEEecCCceEEeCCCceeEEEEeeEEcCC------ce-EEEeecCCCCCCCcEEEEEEEe
Q 041993 191 NSPNTDGIHVQLSSDVTILNTRISTGDDCVSIGPGTSNLWIENVACGPG------HG-ISIGSLGKDLNEAGVQNVTVKT 263 (391)
Q Consensus 191 ~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~nv~i~n~~~~~~------~g-i~igs~g~~~~~~~i~nI~i~n 263 (391)
| -+... +..-..++|.|...=|-|- |.....++||.+..- .+ |.-. +. .+...-..+.|.|
T Consensus 355 D-----TLy~~-~~rq~y~~c~I~GtVDFIF---G~a~avfq~c~i~~r~~~~~~~~~iTA~--~r-~~~~~~tG~~~~~ 422 (538)
T PLN03043 355 D-----TLYVH-SLRQFYRECDIYGTVDFIF---GNAAAIFQNCNLYARKPMANQKNAFTAQ--GR-TDPNQNTGISIIN 422 (538)
T ss_pred c-----ccccC-CCcEEEEeeEEeeccceEe---ecceeeeeccEEEEecCCCCCCceEEec--CC-CCCCCCceEEEEe
Confidence 3 23222 3457889999997544332 346789999998642 12 2221 11 1122345688999
Q ss_pred eEEeCCceEE----EEEEecCCCCeeEEEEEEEEEEEecC
Q 041993 264 VTFTGTQNGL----RIKSWGRPSNGFARNILFRNAIMKNV 299 (391)
Q Consensus 264 ~~~~~~~~gi----~i~~~~~~~~g~i~nI~~~ni~~~~~ 299 (391)
|++.....-. ..+.+=|..+.....++|.+..|.+.
T Consensus 423 c~i~~~~~~~~~~~~~~~yLGRpW~~ysr~v~~~s~i~~~ 462 (538)
T PLN03043 423 CTIEAAPDLAMDPNSTMNFLGRPWKPYSRTVYMQSYIGDL 462 (538)
T ss_pred cEEecCCcccccccccceeccCCCCCCceEEEEecccCCe
Confidence 9998753211 01111122444567788888888753
No 62
>PLN02488 probable pectinesterase/pectinesterase inhibitor
Probab=97.37 E-value=0.05 Score=54.90 Aligned_cols=211 Identities=11% Similarity=0.047 Sum_probs=113.0
Q ss_pred ccHHHHHHHHHHHcCCC-CCcEEEEcCCeEEEeeeeeeCCccCccEEEEEccEEEeccCccccCCCCceEEEEeeeeeEE
Q 041993 41 DSTKAFLSAWANACGSP-RAATIYVPPGRFFLRNVAFQGPCKNNRITIRIDGTLVAPSDYRVIGNAGNWLFFQHVDGVTL 119 (391)
Q Consensus 41 d~t~aiq~Ai~~a~~~~-~g~~v~ip~G~Y~~~~~~l~~~~~s~~~~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~ni~I 119 (391)
-+=.-||+||+++.... .--+|+|.+|+|.-. +.+... |. +++|.++|. + ...|... .+.
T Consensus 207 G~f~TIq~AI~a~P~~~~~r~vI~Ik~GvY~E~-V~I~~~-k~-nItliGdg~-----~-------~TiIt~n--~~~-- 267 (509)
T PLN02488 207 GKYNTVNAAIAAAPEHSRKRFVIYIKTGVYDEI-VRIGST-KP-NLTLIGDGQ-----D-------STIITGN--LSA-- 267 (509)
T ss_pred CCccCHHHHHHhchhcCCCcEEEEEeCCeeEEE-EEecCC-Cc-cEEEEecCC-----C-------ceEEEEc--ccc--
Confidence 35677999997653321 235789999999743 344211 25 888888861 0 0011110 000
Q ss_pred eceeEeCCCccccccccCCCCCCCCCeeEEEEeecceEEEeEEEecCCc----eeEEEe-ceeeEEEEeEEEEcCCCCCC
Q 041993 120 NSGILDGQGTALWACKNSGKNCPSGATSMGFSNCNNIAINGLTSLNSQM----YHVVFN-GCNNVKLKGVKVLASGNSPN 194 (391)
Q Consensus 120 ~GG~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~n~~~----~~i~~~-~~~nv~i~n~~i~~~~~~~~ 194 (391)
-+|.+ +-...-.....+++..+|++++|... ..+-+. .++...+.+|.|....|
T Consensus 268 ----~~g~~--------------T~~SATv~v~g~gF~A~nitf~Ntag~~~~QAVALrv~~Dra~Fy~C~f~GyQD--- 326 (509)
T PLN02488 268 ----SNGKR--------------TFYTATVASNGDGFIGIDMCFRNTAGPAKGPAVALRVSGDMSVIYRCRIEGYQD--- 326 (509)
T ss_pred ----cCCCC--------------ceeeEEEEEEcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeeccCc---
Confidence 00100 00112233457778888888887642 233333 35778888888887433
Q ss_pred CCceeeeccccEEEEeeEEecCCceEEeCCCceeEEEEeeEEcCC-----ceEEEeecCCCCCCCcEEEEEEEeeEEeCC
Q 041993 195 TDGIHVQLSSDVTILNTRISTGDDCVSIGPGTSNLWIENVACGPG-----HGISIGSLGKDLNEAGVQNVTVKTVTFTGT 269 (391)
Q Consensus 195 ~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~nv~i~n~~~~~~-----~gi~igs~g~~~~~~~i~nI~i~n~~~~~~ 269 (391)
-+.. .+.+-.+++|.|...=|-|- |.....++||.+..- ..-.|=..+. .....-..+.|.||++...
T Consensus 327 --TLy~-~~~RqyyrdC~I~GtVDFIF---G~a~avFq~C~I~sr~~~~~~~~~ITAq~R-~~~~~~tGfvf~~C~it~~ 399 (509)
T PLN02488 327 --ALYP-HRDRQFYRECFITGTVDFIC---GNAAAVFQFCQIVARQPMMGQSNVITAQSR-ESKDDNSGFSIQKCNITAS 399 (509)
T ss_pred --ceee-CCCCEEEEeeEEeeccceEe---cceEEEEEccEEEEecCCCCCCEEEEeCCC-CCCCCCcEEEEEeeEEecC
Confidence 2322 23567788888887544332 356788888888642 1112211111 1112235688888888875
Q ss_pred ceEEE----EEEecCCCCeeEEEEEEEEEEEec
Q 041993 270 QNGLR----IKSWGRPSNGFARNILFRNAIMKN 298 (391)
Q Consensus 270 ~~gi~----i~~~~~~~~g~i~nI~~~ni~~~~ 298 (391)
..... .+.+=|..+.....++|.+..|.+
T Consensus 400 ~~~~~~~~~~~~YLGRPW~~ySrvVf~~s~i~~ 432 (509)
T PLN02488 400 SDLDPVKATVKTYLGRPWRKYSTVAVLQSFIGD 432 (509)
T ss_pred CcccccccccceeecCCCCCCccEEEEeccCCC
Confidence 42111 111112234455667777777765
No 63
>PLN02197 pectinesterase
Probab=97.37 E-value=0.039 Score=57.01 Aligned_cols=214 Identities=13% Similarity=0.071 Sum_probs=117.3
Q ss_pred cHHHHHHHHHHHcCCCC-CcEEEEcCCeEEEeeeeeeCCccCccEEEEEccEEEeccCccccCCCCceEEEEeeeeeEEe
Q 041993 42 STKAFLSAWANACGSPR-AATIYVPPGRFFLRNVAFQGPCKNNRITIRIDGTLVAPSDYRVIGNAGNWLFFQHVDGVTLN 120 (391)
Q Consensus 42 ~t~aiq~Ai~~a~~~~~-g~~v~ip~G~Y~~~~~~l~~~~~s~~~~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~ni~I~ 120 (391)
|-.-||+||+++..... --+|+|.+|+|.-. +.+... |. +++|.++|. + ...|... ++....
T Consensus 286 ~f~TIq~Ai~a~P~~~~~r~vI~Ik~GvY~E~-V~I~~~-k~-ni~l~G~g~-----~-------~TiIt~~--~~~~~~ 348 (588)
T PLN02197 286 QFKTISQAVMACPDKNPGRCIIHIKAGIYNEQ-VTIPKK-KN-NIFMFGDGA-----R-------KTVISYN--RSVKLS 348 (588)
T ss_pred CcCCHHHHHHhccccCCceEEEEEeCceEEEE-EEccCC-Cc-eEEEEEcCC-----C-------CeEEEec--cccccC
Confidence 56789999976533221 24689999999743 334211 24 888888861 0 0011111 111000
Q ss_pred ceeEeCCCccccccccCCCCCCCCCeeEEEEeecceEEEeEEEecCCc----eeEEEe-ceeeEEEEeEEEEcCCCCCCC
Q 041993 121 SGILDGQGTALWACKNSGKNCPSGATSMGFSNCNNIAINGLTSLNSQM----YHVVFN-GCNNVKLKGVKVLASGNSPNT 195 (391)
Q Consensus 121 GG~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~n~~~----~~i~~~-~~~nv~i~n~~i~~~~~~~~~ 195 (391)
+|.+ +-...-.....+++..+|++|.|... ..+-+. .++...+++|.|....|
T Consensus 349 ----~g~~--------------T~~SaT~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~GyQD---- 406 (588)
T PLN02197 349 ----PGTT--------------TSLSGTVQVESEGFMAKWIGFKNTAGPMGHQAVAIRVNGDRAVIFNCRFDGYQD---- 406 (588)
T ss_pred ----CCCc--------------ccceeEEEEECCcEEEEEeEEEeCCCCCCCceEEEEecCCcEEEEEeEEEecCc----
Confidence 0100 01112234468889999999998643 334333 46888999999987433
Q ss_pred CceeeeccccEEEEeeEEecCCceEEeCCCceeEEEEeeEEcCC---ce--EEEeecCCCCCCCcEEEEEEEeeEEeCCc
Q 041993 196 DGIHVQLSSDVTILNTRISTGDDCVSIGPGTSNLWIENVACGPG---HG--ISIGSLGKDLNEAGVQNVTVKTVTFTGTQ 270 (391)
Q Consensus 196 DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~nv~i~n~~~~~~---~g--i~igs~g~~~~~~~i~nI~i~n~~~~~~~ 270 (391)
-+... +..-.+++|.|...=|-| .|.....++||.+... .| -.|=..+.......-..+.|.||.+.+..
T Consensus 407 -TLy~~-~~Rqyy~~C~I~GtVDFI---FG~a~avfq~C~i~~r~~~~~~~~~iTAqgr~~~~~~~tG~vf~~C~it~~~ 481 (588)
T PLN02197 407 -TLYVN-NGRQFYRNIVVSGTVDFI---FGKSATVIQNSLIVVRKGSKGQYNTVTADGNEKGLAMKIGIVLQNCRIVPDK 481 (588)
T ss_pred -ceEec-CCCEEEEeeEEEeccccc---ccceeeeeecCEEEEecCCCCCceeEECCCCCCCCCCCcEEEEEccEEecCC
Confidence 33333 355688999998754432 2345689999988632 12 12211111100122456889999998754
Q ss_pred eEE----EEEEecCCCCeeEEEEEEEEEEEecC
Q 041993 271 NGL----RIKSWGRPSNGFARNILFRNAIMKNV 299 (391)
Q Consensus 271 ~gi----~i~~~~~~~~g~i~nI~~~ni~~~~~ 299 (391)
... ..+.+=|..+.....++|.+..|.+.
T Consensus 482 ~~~~~~~~~~~yLGRPW~~ysrvV~~~s~~~~~ 514 (588)
T PLN02197 482 KLTAERLTVASYLGRPWKKFSTTVIISTEIGDL 514 (588)
T ss_pred cccccccccccccCCCCCCCceEEEEecccCCe
Confidence 211 11222232445567788888888653
No 64
>PLN02416 probable pectinesterase/pectinesterase inhibitor
Probab=97.37 E-value=0.03 Score=57.45 Aligned_cols=208 Identities=15% Similarity=0.133 Sum_probs=113.6
Q ss_pred cHHHHHHHHHHHcCCC-CCcEEEEcCCeEEEeeeeeeCCccCccEEEEEccEEEeccCccccCCCCceEEEEeeeeeEEe
Q 041993 42 STKAFLSAWANACGSP-RAATIYVPPGRFFLRNVAFQGPCKNNRITIRIDGTLVAPSDYRVIGNAGNWLFFQHVDGVTLN 120 (391)
Q Consensus 42 ~t~aiq~Ai~~a~~~~-~g~~v~ip~G~Y~~~~~~l~~~~~s~~~~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~ni~I~ 120 (391)
|=.-||+||+++.... .-.+|+|.+|+|.- .+.++.. |+ +++|.++|. +...|.
T Consensus 241 ~f~TIq~Ai~a~p~~~~~r~vI~Ik~GvY~E-~V~i~~~-k~-~i~l~G~g~----------------------~~TiIt 295 (541)
T PLN02416 241 NFSTITDAINFAPNNSNDRIIIYVREGVYEE-NVEIPIY-KT-NIVLIGDGS----------------------DVTFIT 295 (541)
T ss_pred CccCHHHHHHhhhhcCCceEEEEEeCceeEE-EEecCCC-Cc-cEEEEecCC----------------------CceEEe
Confidence 5678999997653322 22478999999964 3333211 24 888888762 001111
Q ss_pred c--eeEeCCCccccccccCCCCCCCCCeeEEEEeecceEEEeEEEecCCc----eeEEEe-ceeeEEEEeEEEEcCCCCC
Q 041993 121 S--GILDGQGTALWACKNSGKNCPSGATSMGFSNCNNIAINGLTSLNSQM----YHVVFN-GCNNVKLKGVKVLASGNSP 193 (391)
Q Consensus 121 G--G~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~n~~~----~~i~~~-~~~nv~i~n~~i~~~~~~~ 193 (391)
+ -..+| |. .....-.....+++..+|++|.|... ..+-+. .++...+.+|.|....|
T Consensus 296 ~~~~~~~g-----~~---------T~~saT~~v~~~~F~a~nitf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G~QD-- 359 (541)
T PLN02416 296 GNRSVVDG-----WT---------TFRSATLAVSGEGFLARDITIENTAGPEKHQAVALRVNADLVALYRCTINGYQD-- 359 (541)
T ss_pred CCCccCCC-----CC---------ccceEEEEEECCCeEEEeeEEEECCCCCCCceEEEEEcCccEEEEcceEecccc--
Confidence 1 00011 00 01112234458889999999987743 223332 46788899999887543
Q ss_pred CCCceeeeccccEEEEeeEEecCCceEEeCCCceeEEEEeeEEcCCc---e--EEEeecCCCCCCCcEEEEEEEeeEEeC
Q 041993 194 NTDGIHVQLSSDVTILNTRISTGDDCVSIGPGTSNLWIENVACGPGH---G--ISIGSLGKDLNEAGVQNVTVKTVTFTG 268 (391)
Q Consensus 194 ~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~nv~i~n~~~~~~~---g--i~igs~g~~~~~~~i~nI~i~n~~~~~ 268 (391)
-+... +..-..++|.|...=|-|- |.....++||++..-. | -.|=..+ +.....-..+.|.||++..
T Consensus 360 ---TLy~~-~~Rqyy~~C~I~GtVDFIF---G~a~avfq~c~i~~~~~~~~~~~~iTA~~-r~~~~~~~G~vf~~c~i~~ 431 (541)
T PLN02416 360 ---TLYVH-SFRQFYRECDIYGTIDYIF---GNAAVVFQACNIVSKMPMPGQFTVITAQS-RDTPDEDTGISIQNCSILA 431 (541)
T ss_pred ---hhccC-CCceEEEeeEEeeccceee---ccceEEEeccEEEEecCCCCCceEEECCC-CCCCCCCCEEEEEeeEEec
Confidence 22222 3566888999987544332 3467888899886421 1 1120111 1112234568899999876
Q ss_pred CceEE----EEEEecCCCCeeEEEEEEEEEEEec
Q 041993 269 TQNGL----RIKSWGRPSNGFARNILFRNAIMKN 298 (391)
Q Consensus 269 ~~~gi----~i~~~~~~~~g~i~nI~~~ni~~~~ 298 (391)
..... ..+.+=|..+.....++|.+..|.+
T Consensus 432 ~~~~~~~~~~~~~yLGRPW~~~sr~v~~~s~i~~ 465 (541)
T PLN02416 432 TEDLYSNSNSVKSYLGRPWRVYSRTVVLESYIDD 465 (541)
T ss_pred CCccccccccccccccCCCCCCccEEEEecccCC
Confidence 53210 0111112234455677888877765
No 65
>PLN02506 putative pectinesterase/pectinesterase inhibitor
Probab=97.36 E-value=0.017 Score=59.02 Aligned_cols=204 Identities=15% Similarity=0.134 Sum_probs=111.5
Q ss_pred cHHHHHHHHHHHcCC-CCCcEEEEcCCeEEEeeeeeeCCccCccEEEEEccEEEeccCccccCCCCceEEEEeeeeeEEe
Q 041993 42 STKAFLSAWANACGS-PRAATIYVPPGRFFLRNVAFQGPCKNNRITIRIDGTLVAPSDYRVIGNAGNWLFFQHVDGVTLN 120 (391)
Q Consensus 42 ~t~aiq~Ai~~a~~~-~~g~~v~ip~G~Y~~~~~~l~~~~~s~~~~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~ni~I~ 120 (391)
+=.-||+||+++... .+--+|+|.+|+|.-. +.+... |. +++|.++|. +...|.
T Consensus 243 ~f~TIq~Av~a~p~~~~~r~vI~Vk~GvY~E~-V~I~~~-k~-~i~l~G~g~----------------------~~tiIt 297 (537)
T PLN02506 243 HYRTITEAINEAPNHSNRRYIIYVKKGVYKEN-IDMKKK-KT-NIMLVGDGI----------------------GQTVVT 297 (537)
T ss_pred CccCHHHHHHhchhcCCCcEEEEEeCCeeeEE-EeccCC-Cc-eEEEEEcCC----------------------CCeEEE
Confidence 467899999765332 2235889999999653 222210 24 888887761 111111
Q ss_pred c-eeEeCCCccccccccCCCCCCCCCeeEEEEeecceEEEeEEEecCCc----eeEEEe-ceeeEEEEeEEEEcCCCCCC
Q 041993 121 S-GILDGQGTALWACKNSGKNCPSGATSMGFSNCNNIAINGLTSLNSQM----YHVVFN-GCNNVKLKGVKVLASGNSPN 194 (391)
Q Consensus 121 G-G~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~n~~~----~~i~~~-~~~nv~i~n~~i~~~~~~~~ 194 (391)
+ ... ..| | .+....-.....+++..+|++|.|... ..+-+. ..+...+.+|.|....|
T Consensus 298 ~~~~~-~~g---~---------~T~~saT~~v~~~~F~a~nit~~Ntag~~~~QAVAl~v~~D~~~fy~C~~~G~QD--- 361 (537)
T PLN02506 298 GNRNF-MQG---W---------TTFRTATVAVSGRGFIARDITFRNTAGPQNHQAVALRVDSDQSAFYRCSMEGYQD--- 361 (537)
T ss_pred eCccc-cCC---C---------CcccceEEEEEcCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeecccc---
Confidence 1 000 001 0 011112345578889999999998742 233333 36788888888887433
Q ss_pred CCceeeeccccEEEEeeEEecCCceEEeCCCceeEEEEeeEEcCCc-----eEEEeecCCCCCCCcEEEEEEEeeEEeCC
Q 041993 195 TDGIHVQLSSDVTILNTRISTGDDCVSIGPGTSNLWIENVACGPGH-----GISIGSLGKDLNEAGVQNVTVKTVTFTGT 269 (391)
Q Consensus 195 ~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~nv~i~n~~~~~~~-----gi~igs~g~~~~~~~i~nI~i~n~~~~~~ 269 (391)
-+... +..-..++|.|...=|-| + |.....++||.+..-. .-.|=..+.. ....-..+.|.||++...
T Consensus 362 --TLy~~-~~rqyy~~C~I~GtVDFI-F--G~a~avfq~C~i~~r~~~~~~~~~iTA~~r~-~~~~~~G~vf~~c~i~~~ 434 (537)
T PLN02506 362 --TLYAH-SLRQFYRECEIYGTIDFI-F--GNGAAVLQNCKIYTRVPLPLQKVTITAQGRK-SPHQSTGFSIQDSYVLAT 434 (537)
T ss_pred --cceec-CCceEEEeeEEecccceE-c--cCceeEEeccEEEEccCCCCCCceEEccCCC-CCCCCcEEEEEcCEEccC
Confidence 22222 345678888888754433 2 3456888888886421 1112111111 112235677888888764
Q ss_pred ceEEEEEEecCCCCeeEEEEEEEEEEEec
Q 041993 270 QNGLRIKSWGRPSNGFARNILFRNAIMKN 298 (391)
Q Consensus 270 ~~gi~i~~~~~~~~g~i~nI~~~ni~~~~ 298 (391)
. ..++. ..+.....++|.+..|.+
T Consensus 435 ~-~~yLG----RPW~~~sr~v~~~t~l~~ 458 (537)
T PLN02506 435 Q-PTYLG----RPWKQYSRTVFMNTYMSQ 458 (537)
T ss_pred C-ceEEe----cCCCCCceEEEEecCCCC
Confidence 2 23332 134446677777777765
No 66
>PLN02432 putative pectinesterase
Probab=97.31 E-value=0.079 Score=50.09 Aligned_cols=199 Identities=15% Similarity=0.129 Sum_probs=105.9
Q ss_pred cHHHHHHHHHHHcCCC-CCcEEEEcCCeEEEeeeeeeCCccCccEEEEEccEEEeccCccccCCCCceEEEEeeeeeEEe
Q 041993 42 STKAFLSAWANACGSP-RAATIYVPPGRFFLRNVAFQGPCKNNRITIRIDGTLVAPSDYRVIGNAGNWLFFQHVDGVTLN 120 (391)
Q Consensus 42 ~t~aiq~Ai~~a~~~~-~g~~v~ip~G~Y~~~~~~l~~~~~s~~~~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~ni~I~ 120 (391)
|=.-||+||+++.... .-.+|+|.+|+|.-. +.++.. |+ +++|.+++. ++..|.
T Consensus 22 ~f~TIq~Aida~p~~~~~~~~I~I~~G~Y~E~-V~ip~~-k~-~itl~G~~~----------------------~~TvI~ 76 (293)
T PLN02432 22 DFRKIQDAIDAVPSNNSQLVFIWVKPGIYREK-VVVPAD-KP-FITLSGTQA----------------------SNTIIT 76 (293)
T ss_pred CccCHHHHHhhccccCCceEEEEEeCceeEEE-EEEecc-Cc-eEEEEEcCC----------------------CCeEEE
Confidence 5788999998753322 224789999999532 344211 24 788877651 111111
Q ss_pred ceeEeCCCccccccccCCCCCCCCCeeEEEEeecceEEEeEEEecCCc---eeEEEe-ceeeEEEEeEEEEcCCCCCCCC
Q 041993 121 SGILDGQGTALWACKNSGKNCPSGATSMGFSNCNNIAINGLTSLNSQM---YHVVFN-GCNNVKLKGVKVLASGNSPNTD 196 (391)
Q Consensus 121 GG~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~n~~~---~~i~~~-~~~nv~i~n~~i~~~~~~~~~D 196 (391)
. + ++. . ..+ ..-.....+++..+|++|+|... ..+-+. ..+...+.+|.|....|
T Consensus 77 ~---~-~~~---~--------~~~-saT~~v~a~~f~a~nlt~~Nt~g~~~QAvAl~v~gDr~~f~~c~~~G~QD----- 135 (293)
T PLN02432 77 W---N-DGG---D--------IFE-SPTLSVLASDFVGRFLTIQNTFGSSGKAVALRVAGDRAAFYGCRILSYQD----- 135 (293)
T ss_pred e---c-CCc---c--------ccc-ceEEEEECCCeEEEeeEEEeCCCCCCceEEEEEcCCcEEEEcceEecccc-----
Confidence 1 0 000 0 000 11223456788888888887632 222222 35778888888886432
Q ss_pred ceeeeccccEEEEeeEEecCCceEEeCCCceeEEEEeeEEcC---Cce-EEEeecCCCCCCCcEEEEEEEeeEEeCCceE
Q 041993 197 GIHVQLSSDVTILNTRISTGDDCVSIGPGTSNLWIENVACGP---GHG-ISIGSLGKDLNEAGVQNVTVKTVTFTGTQNG 272 (391)
Q Consensus 197 Gi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~nv~i~n~~~~~---~~g-i~igs~g~~~~~~~i~nI~i~n~~~~~~~~g 272 (391)
-+-.. ...-.++||.|...=|-|- |.....+++|++.. ..| +.--+. .....-....|.||++.+.. .
T Consensus 136 TLy~~-~gr~yf~~c~I~G~VDFIF---G~g~a~Fe~c~i~s~~~~~g~itA~~r---~~~~~~~Gfvf~~c~itg~g-~ 207 (293)
T PLN02432 136 TLLDD-TGRHYYRNCYIEGATDFIC---GNAASLFEKCHLHSLSPNNGAITAQQR---TSASENTGFTFLGCKLTGAG-T 207 (293)
T ss_pred eeEEC-CCCEEEEeCEEEecccEEe---cCceEEEEeeEEEEecCCCCeEEecCC---CCCCCCceEEEEeeEEcccc-h
Confidence 22222 2456778888887544332 23568888888863 123 221111 01112235778888887532 1
Q ss_pred EEEEEecCCCCeeEEEEEEEEEEEec
Q 041993 273 LRIKSWGRPSNGFARNILFRNAIMKN 298 (391)
Q Consensus 273 i~i~~~~~~~~g~i~nI~~~ni~~~~ 298 (391)
+.+ +........++|.|..|.+
T Consensus 208 ~yL----GRpW~~~srvvf~~t~l~~ 229 (293)
T PLN02432 208 TYL----GRPWGPYSRVVFALSYMSS 229 (293)
T ss_pred hhc----cCCCCCccEEEEEecccCC
Confidence 222 1133445677788877764
No 67
>PLN02314 pectinesterase
Probab=97.30 E-value=0.037 Score=57.45 Aligned_cols=209 Identities=16% Similarity=0.142 Sum_probs=115.1
Q ss_pred cHHHHHHHHHHHcCCC-CCcEEEEcCCeEEEeeeeeeCCccCccEEEEEccEEEeccCccccCCCCceEEEEeeeeeEEe
Q 041993 42 STKAFLSAWANACGSP-RAATIYVPPGRFFLRNVAFQGPCKNNRITIRIDGTLVAPSDYRVIGNAGNWLFFQHVDGVTLN 120 (391)
Q Consensus 42 ~t~aiq~Ai~~a~~~~-~g~~v~ip~G~Y~~~~~~l~~~~~s~~~~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~ni~I~ 120 (391)
+-.-||+||+++.... .--+|+|.+|+|.- .+.+... |. +++|.++|. + ...|.. ..+.
T Consensus 289 ~f~TI~~Av~a~p~~~~~r~vI~ik~G~Y~E-~V~i~~~-k~-~i~l~G~g~-----~-------~tiIt~--~~~~--- 348 (586)
T PLN02314 289 DVKTINEAVASIPKKSKSRFVIYVKEGTYVE-NVLLDKS-KW-NVMIYGDGK-----D-------KTIISG--SLNF--- 348 (586)
T ss_pred CccCHHHHHhhccccCCceEEEEEcCceEEE-EEEecCC-Cc-eEEEEecCC-----C-------CcEEEe--cCCc---
Confidence 4667999997653321 22478999999974 3333211 24 888888761 0 001111 0110
Q ss_pred ceeEeCCCccccccccCCCCCCCCCeeEEEEeecceEEEeEEEecCCc----eeEEEe-ceeeEEEEeEEEEcCCCCCCC
Q 041993 121 SGILDGQGTALWACKNSGKNCPSGATSMGFSNCNNIAINGLTSLNSQM----YHVVFN-GCNNVKLKGVKVLASGNSPNT 195 (391)
Q Consensus 121 GG~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~n~~~----~~i~~~-~~~nv~i~n~~i~~~~~~~~~ 195 (391)
.+|.. . -...-.....+++..+|++|.|... ..+-+. ..+...+.+|.|....|
T Consensus 349 ---~~g~~-t-------------~~saT~~v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~f~~c~~~G~QD---- 407 (586)
T PLN02314 349 ---VDGTP-T-------------FSTATFAAAGKGFIAKDMGFINTAGAAKHQAVAFRSGSDMSVFYQCSFDAFQD---- 407 (586)
T ss_pred ---CCCCC-c-------------cceEEEEEEcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeEEEeccc----
Confidence 01110 0 1112334468888889999988742 233333 46778889999987433
Q ss_pred CceeeeccccEEEEeeEEecCCceEEeCCCceeEEEEeeEEcCC------ceEEEeecCCCCCCCcEEEEEEEeeEEeCC
Q 041993 196 DGIHVQLSSDVTILNTRISTGDDCVSIGPGTSNLWIENVACGPG------HGISIGSLGKDLNEAGVQNVTVKTVTFTGT 269 (391)
Q Consensus 196 DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~nv~i~n~~~~~~------~gi~igs~g~~~~~~~i~nI~i~n~~~~~~ 269 (391)
-+... +..-..++|.|...=|-| .|.....++||.+... .+ .|=..+. .+...-..+.|.||.+.+.
T Consensus 408 -TLy~~-~~rq~y~~C~I~GtvDFI---FG~a~avf~~c~i~~~~~~~~~~~-~iTA~~r-~~~~~~~G~vf~~c~i~~~ 480 (586)
T PLN02314 408 -TLYAH-SNRQFYRDCDITGTIDFI---FGNAAVVFQNCNIQPRQPLPNQFN-TITAQGK-KDPNQNTGISIQRCTISAF 480 (586)
T ss_pred -hheeC-CCCEEEEeeEEEecccee---ccCceeeeeccEEEEecCCCCCCc-eEecCCC-CCCCCCCEEEEEeeEEecC
Confidence 23222 345678899998754433 2346788999988642 12 1211111 1122345688999999876
Q ss_pred ceEEEEEEecCCCCeeEEEEEEEEEEEecC
Q 041993 270 QNGLRIKSWGRPSNGFARNILFRNAIMKNV 299 (391)
Q Consensus 270 ~~gi~i~~~~~~~~g~i~nI~~~ni~~~~~ 299 (391)
.. +..+.+=|..+.....++|.+..|.+.
T Consensus 481 ~~-~~~~~yLGRpW~~ysr~v~~~s~i~~~ 509 (586)
T PLN02314 481 GN-LTAPTYLGRPWKDFSTTVIMQSYIGSF 509 (586)
T ss_pred Cc-ccccccccCCCCCCceEEEEecccCCc
Confidence 42 111111122344456678888887764
No 68
>PLN02217 probable pectinesterase/pectinesterase inhibitor
Probab=97.28 E-value=0.043 Score=57.38 Aligned_cols=211 Identities=12% Similarity=0.050 Sum_probs=119.2
Q ss_pred cHHHHHHHHHHHcCCC-CCcEEEEcCCeEEEeeeeeeCCccCccEEEEEccEEEeccCccccCCCCceEEEEeeeeeEEe
Q 041993 42 STKAFLSAWANACGSP-RAATIYVPPGRFFLRNVAFQGPCKNNRITIRIDGTLVAPSDYRVIGNAGNWLFFQHVDGVTLN 120 (391)
Q Consensus 42 ~t~aiq~Ai~~a~~~~-~g~~v~ip~G~Y~~~~~~l~~~~~s~~~~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~ni~I~ 120 (391)
+=.-||+||+++.... .--+|+|.+|+|.-. +.+... |. +++|.++|. +...|.
T Consensus 261 ~f~TIq~Av~a~P~~~~~r~vI~Ik~GvY~E~-V~I~~~-k~-~i~l~Gdg~----------------------~~TiIt 315 (670)
T PLN02217 261 QYKTINEALNFVPKKKNTTFVVHIKAGIYKEY-VQVNRS-MT-HLVFIGDGP----------------------DKTVIS 315 (670)
T ss_pred CccCHHHHHHhccccCCceEEEEEeCCceEEE-EEEcCC-CC-cEEEEecCC----------------------CCeEEE
Confidence 5678999997653221 234789999999653 333211 24 777777761 111111
Q ss_pred ceeEeCCCccccccccCCCCCCCCCeeEEEEeecceEEEeEEEecCCc----eeEEEe-ceeeEEEEeEEEEcCCCCCCC
Q 041993 121 SGILDGQGTALWACKNSGKNCPSGATSMGFSNCNNIAINGLTSLNSQM----YHVVFN-GCNNVKLKGVKVLASGNSPNT 195 (391)
Q Consensus 121 GG~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~n~~~----~~i~~~-~~~nv~i~n~~i~~~~~~~~~ 195 (391)
+..--..|. .+....-.....+++..+|++|.|... ..+-+. ..+...+++|.|....|
T Consensus 316 ~~~~~~dg~------------~T~~SAT~~v~g~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~QD---- 379 (670)
T PLN02217 316 GSKSYKDGI------------TTYKTATVAIVGDHFIAKNIGFENTAGAIKHQAVAIRVLSDESIFYNCKFDGYQD---- 379 (670)
T ss_pred cCCccCCCC------------CccceEEEEEECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeeeccc----
Confidence 100000010 001112234468889999999988753 334333 46889999999997433
Q ss_pred CceeeeccccEEEEeeEEecCCceEEeCCCceeEEEEeeEEcCCc-----eEEEeecCCCCCCCcEEEEEEEeeEEeCCc
Q 041993 196 DGIHVQLSSDVTILNTRISTGDDCVSIGPGTSNLWIENVACGPGH-----GISIGSLGKDLNEAGVQNVTVKTVTFTGTQ 270 (391)
Q Consensus 196 DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~nv~i~n~~~~~~~-----gi~igs~g~~~~~~~i~nI~i~n~~~~~~~ 270 (391)
-+... ..+-.+++|.|...=|-|- |.....++||.+.... .-.|=..+. .+...-..+.|.||++.+..
T Consensus 380 -TLy~~-~~Rqyy~~C~I~GtVDFIF---G~a~avfq~C~I~~r~~~~~~~~~ITAqgr-~~~~~~tGfvf~~C~i~~~~ 453 (670)
T PLN02217 380 -TLYAH-SHRQFYRDCTISGTIDFLF---GDAAAVFQNCTLLVRKPLLNQACPITAHGR-KDPRESTGFVLQGCTIVGEP 453 (670)
T ss_pred -hhccC-CCcEEEEeCEEEEeccEEe---cCceEEEEccEEEEccCCCCCceeEecCCC-CCCCCCceEEEEeeEEecCc
Confidence 23322 3567889999997544332 3467999999997421 112211111 11223457899999998864
Q ss_pred eEEE----EEEecCCCCeeEEEEEEEEEEEecC
Q 041993 271 NGLR----IKSWGRPSNGFARNILFRNAIMKNV 299 (391)
Q Consensus 271 ~gi~----i~~~~~~~~g~i~nI~~~ni~~~~~ 299 (391)
..+. .+.+=|..+.....++|.+..|.+.
T Consensus 454 ~~~~~~~~~~~yLGRPW~~ysrvVf~~t~l~~~ 486 (670)
T PLN02217 454 DYLAVKETSKAYLGRPWKEYSRTIIMNTFIPDF 486 (670)
T ss_pred cccccccccceeeccCCCCCceEEEEecccCCe
Confidence 2111 1111122455577888888888754
No 69
>PLN02990 Probable pectinesterase/pectinesterase inhibitor
Probab=97.26 E-value=0.054 Score=55.97 Aligned_cols=212 Identities=13% Similarity=0.103 Sum_probs=116.7
Q ss_pred cHHHHHHHHHHHcCCC-CCcEEEEcCCeEEEeeeeeeCCccCccEEEEEccEEEeccCccccCCCCceEEEEeeeeeEEe
Q 041993 42 STKAFLSAWANACGSP-RAATIYVPPGRFFLRNVAFQGPCKNNRITIRIDGTLVAPSDYRVIGNAGNWLFFQHVDGVTLN 120 (391)
Q Consensus 42 ~t~aiq~Ai~~a~~~~-~g~~v~ip~G~Y~~~~~~l~~~~~s~~~~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~ni~I~ 120 (391)
+-.-||+||+++.... .--+|+|.+|+|.-. +.++.. |. +++|.++|. + ...|.. ..+..
T Consensus 270 ~f~TIq~Av~a~p~~~~~r~vI~Ik~GvY~E~-V~i~~~-k~-~i~l~G~g~-----~-------~TiIt~--~~~~~-- 330 (572)
T PLN02990 270 QYKTINEALNAVPKANQKPFVIYIKQGVYNEK-VDVTKK-MT-HVTFIGDGP-----T-------KTKITG--SLNFY-- 330 (572)
T ss_pred CCcCHHHHHhhCcccCCceEEEEEeCceeEEE-EEecCC-CC-cEEEEecCC-----C-------ceEEEe--ccccC--
Confidence 4667999997653221 234789999999743 344211 24 888888861 0 001111 01100
Q ss_pred ceeEeCCCccccccccCCCCCCCCCeeEEEEeecceEEEeEEEecCCc----eeEEEe-ceeeEEEEeEEEEcCCCCCCC
Q 041993 121 SGILDGQGTALWACKNSGKNCPSGATSMGFSNCNNIAINGLTSLNSQM----YHVVFN-GCNNVKLKGVKVLASGNSPNT 195 (391)
Q Consensus 121 GG~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~n~~~----~~i~~~-~~~nv~i~n~~i~~~~~~~~~ 195 (391)
+|. |. +-...-.....+++..+|++|.|... ..+-+. .++...+++|.|....|
T Consensus 331 ----~g~----~~---------T~~saT~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G~QD---- 389 (572)
T PLN02990 331 ----IGK----VK---------TYLTATVAINGDHFTAKNIGFENTAGPEGHQAVALRVSADYAVFYNCQIDGYQD---- 389 (572)
T ss_pred ----CCC----cc---------ceeeeEEEEEcCCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEecccc----
Confidence 000 00 00112234467888889999988753 233333 46788999999987433
Q ss_pred CceeeeccccEEEEeeEEecCCceEEeCCCceeEEEEeeEEcCC---ce--EEEeecCCCCCCCcEEEEEEEeeEEeCCc
Q 041993 196 DGIHVQLSSDVTILNTRISTGDDCVSIGPGTSNLWIENVACGPG---HG--ISIGSLGKDLNEAGVQNVTVKTVTFTGTQ 270 (391)
Q Consensus 196 DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~nv~i~n~~~~~~---~g--i~igs~g~~~~~~~i~nI~i~n~~~~~~~ 270 (391)
-+... +..-.+++|.|...=|-|- |.....++||++..- .+ -.|=..+. .+...-..+.|.||++.+..
T Consensus 390 -TLy~~-~~Rqyy~~C~I~GtVDFIF---G~a~avf~~C~i~~~~~~~~~~~~iTAq~r-~~~~~~~G~vf~~C~it~~~ 463 (572)
T PLN02990 390 -TLYVH-SHRQFFRDCTVSGTVDFIF---GDAKVVLQNCNIVVRKPMKGQSCMITAQGR-SDVRESTGLVLQNCHITGEP 463 (572)
T ss_pred -hhccC-CCcEEEEeeEEecccceEc---cCceEEEEccEEEEecCCCCCceEEEeCCC-CCCCCCceEEEEeeEEecCc
Confidence 22222 3456789999997544332 345788999998631 11 12211111 11123456889999998864
Q ss_pred eEEEE----EEecCCCCeeEEEEEEEEEEEecC
Q 041993 271 NGLRI----KSWGRPSNGFARNILFRNAIMKNV 299 (391)
Q Consensus 271 ~gi~i----~~~~~~~~g~i~nI~~~ni~~~~~ 299 (391)
..... +.+=|..+.....++|.+..|.+.
T Consensus 464 ~~~~~~~~~~~yLGRpW~~ysrvV~~~s~i~~~ 496 (572)
T PLN02990 464 AYIPVKSINKAYLGRPWKEFSRTIIMGTTIDDV 496 (572)
T ss_pred cccccccccceEeecCCCCCceEEEEecccCCe
Confidence 21111 111122444567788888888753
No 70
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=97.23 E-value=0.0082 Score=53.76 Aligned_cols=116 Identities=17% Similarity=0.179 Sum_probs=71.8
Q ss_pred EeecceEEEeEEEec---------------CCceeEEEeceeeEEEEeEEEEcCCC---CCCCCc-eeee-ccccEEEEe
Q 041993 151 SNCNNIAINGLTSLN---------------SQMYHVVFNGCNNVKLKGVKVLASGN---SPNTDG-IHVQ-LSSDVTILN 210 (391)
Q Consensus 151 ~~~~nv~i~~v~i~n---------------~~~~~i~~~~~~nv~i~n~~i~~~~~---~~~~DG-i~~~-~s~nv~I~n 210 (391)
.+++|+.|+++++.+ ....++.+..+++|.|+.|++..... ....|| +++. .+.+|+|++
T Consensus 43 ~~~~NVIirNl~~~~~~~~~~~~~~~~~~~~~~Dai~i~~~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~~~s~~vTiS~ 122 (200)
T PF00544_consen 43 KGASNVIIRNLRFRNVPVDPGPDWSGDGDSSDGDAISIDNSSNVWIDHCSFSWGNFECNSDSSDGLIDIKKGSDNVTISN 122 (200)
T ss_dssp ESCEEEEEES-EEECEEEECSTEEETTEEECS--SEEEESTEEEEEES-EEEETTS-GGGSSSSSSEEEESSTEEEEEES
T ss_pred cCCCeEEEECCEEEeccccCCcccCCCccccCCCeEEEEecccEEEeccEEeccccccccccCCceEEEEeCCceEEEEc
Confidence 378888888888887 23456888899999999999988621 111454 5765 489999999
Q ss_pred eEEecCCceEEeCCC-------ceeEEEEeeEEcCCce--EEEeecCCCCCCCcEEEEEEEeeEEeC-CceEEEEE
Q 041993 211 TRISTGDDCVSIGPG-------TSNLWIENVACGPGHG--ISIGSLGKDLNEAGVQNVTVKTVTFTG-TQNGLRIK 276 (391)
Q Consensus 211 ~~i~~~dD~i~i~~~-------~~nv~i~n~~~~~~~g--i~igs~g~~~~~~~i~nI~i~n~~~~~-~~~gi~i~ 276 (391)
|.|...+.+..+++. ..++++.+|.+..... -.+. .-.+++.|+.+.+ ..+++...
T Consensus 123 n~f~~~~k~~l~G~~d~~~~~~~~~vT~hhN~f~~~~~R~P~~r----------~G~~Hv~NN~~~~~~~y~i~~~ 188 (200)
T PF00544_consen 123 NIFDNHNKTMLIGSSDSNSTDRGLRVTFHHNYFANTNSRNPRVR----------FGYVHVYNNYYYNWSGYAIGAR 188 (200)
T ss_dssp -EEEEEEETCEESSCTTCGGGTTEEEEEES-EEEEEEE-TTEEC----------SCEEEEES-EEEEECSESEEEE
T ss_pred hhccccccccccCCCCCccccCCceEEEEeEEECchhhCCCccc----------ccEEEEEEeeeECCCCEEEEcc
Confidence 999875443333331 3699999999864321 1220 1237788887755 44566554
No 71
>PLN02313 Pectinesterase/pectinesterase inhibitor
Probab=97.20 E-value=0.054 Score=56.19 Aligned_cols=208 Identities=13% Similarity=0.142 Sum_probs=109.8
Q ss_pred cHHHHHHHHHHHcCCC-CCcEEEEcCCeEEEeeeeeeCCccCccEEEEEccEEEeccCccccCCCCceEEEEeeeeeEEe
Q 041993 42 STKAFLSAWANACGSP-RAATIYVPPGRFFLRNVAFQGPCKNNRITIRIDGTLVAPSDYRVIGNAGNWLFFQHVDGVTLN 120 (391)
Q Consensus 42 ~t~aiq~Ai~~a~~~~-~g~~v~ip~G~Y~~~~~~l~~~~~s~~~~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~ni~I~ 120 (391)
|-.-||+||+++.... .--+|+|.+|+|.-. +.+... |. +++|.++|. +...|+
T Consensus 286 ~f~TI~~Av~a~p~~~~~r~vI~ik~GvY~E~-V~i~~~-k~-ni~l~Gdg~----------------------~~TiIt 340 (587)
T PLN02313 286 DFTTVAAAVAAAPEKSNKRFVIHIKAGVYREN-VEVTKK-KK-NIMFLGDGR----------------------GKTIIT 340 (587)
T ss_pred CCccHHHHHHhccccCCceEEEEEeCceeEEE-EEeCCC-CC-eEEEEecCC----------------------CccEEE
Confidence 5678999997653322 224889999999743 333211 24 788888762 111111
Q ss_pred c--eeEeCCCccccccccCCCCCCCCCeeEEEEeecceEEEeEEEecCCc----eeEEEe-ceeeEEEEeEEEEcCCCCC
Q 041993 121 S--GILDGQGTALWACKNSGKNCPSGATSMGFSNCNNIAINGLTSLNSQM----YHVVFN-GCNNVKLKGVKVLASGNSP 193 (391)
Q Consensus 121 G--G~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~n~~~----~~i~~~-~~~nv~i~n~~i~~~~~~~ 193 (391)
+ -..+|.. .-...-.....+++..+|++|.|... ..+-+. .++...+.+|.|....|
T Consensus 341 ~~~~~~~g~~--------------t~~sat~~v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~g~QD-- 404 (587)
T PLN02313 341 GSRNVVDGST--------------TFHSATVAAVGERFLARDITFQNTAGPSKHQAVALRVGSDFSAFYQCDMFAYQD-- 404 (587)
T ss_pred eCCcccCCCC--------------ceeeEEEEEECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeEecccc--
Confidence 1 0001110 00112234467888888888887743 233333 45777888888886433
Q ss_pred CCCceeeeccccEEEEeeEEecCCceEEeCCCceeEEEEeeEEcCCc---e--EEEeecCCCCCCCcEEEEEEEeeEEeC
Q 041993 194 NTDGIHVQLSSDVTILNTRISTGDDCVSIGPGTSNLWIENVACGPGH---G--ISIGSLGKDLNEAGVQNVTVKTVTFTG 268 (391)
Q Consensus 194 ~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~nv~i~n~~~~~~~---g--i~igs~g~~~~~~~i~nI~i~n~~~~~ 268 (391)
-+... +..-..++|.|...=|-|- |.....++||.+.... | -.|=..|. .+...-..+.|.||.+..
T Consensus 405 ---TLy~~-~~rq~y~~c~I~GtvDFIF---G~a~avfq~c~i~~r~~~~~~~~~iTAqgr-~~~~~~tG~v~~~c~i~~ 476 (587)
T PLN02313 405 ---TLYVH-SNRQFFVKCHITGTVDFIF---GNAAAVLQDCDINARRPNSGQKNMVTAQGR-SDPNQNTGIVIQNCRIGG 476 (587)
T ss_pred ---hhccC-CCcEEEEeeEEeeccceec---cceeEEEEccEEEEecCCCCCcceEEecCC-CCCCCCceEEEEecEEec
Confidence 22222 3455778888887544332 3467888888886321 1 11211111 112234567788888876
Q ss_pred CceEEE----EEEecCCCCeeEEEEEEEEEEEec
Q 041993 269 TQNGLR----IKSWGRPSNGFARNILFRNAIMKN 298 (391)
Q Consensus 269 ~~~gi~----i~~~~~~~~g~i~nI~~~ni~~~~ 298 (391)
...... .+.+=|..+.....++|.+..|.+
T Consensus 477 ~~~~~~~~~~~~~yLGRPW~~ysr~v~~~s~i~~ 510 (587)
T PLN02313 477 TSDLLAVKGTFPTYLGRPWKEYSRTVIMQSDISD 510 (587)
T ss_pred CCccccccccchhhccCCCCCCccEEEEecccCC
Confidence 542111 111112233445566666666654
No 72
>PLN02301 pectinesterase/pectinesterase inhibitor
Probab=97.20 E-value=0.061 Score=55.21 Aligned_cols=209 Identities=12% Similarity=0.110 Sum_probs=116.2
Q ss_pred cHHHHHHHHHHHcCCC-CCcEEEEcCCeEEEeeeeeeCCccCccEEEEEccEEEeccCccccCCCCceEEEEeeeeeEEe
Q 041993 42 STKAFLSAWANACGSP-RAATIYVPPGRFFLRNVAFQGPCKNNRITIRIDGTLVAPSDYRVIGNAGNWLFFQHVDGVTLN 120 (391)
Q Consensus 42 ~t~aiq~Ai~~a~~~~-~g~~v~ip~G~Y~~~~~~l~~~~~s~~~~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~ni~I~ 120 (391)
|=.-||+||+++.... .--+|+|.+|+|.-. +.+... |. +++|.++|. + ...|.. ..+.
T Consensus 247 ~f~TIq~Ai~a~P~~~~~r~vI~Ik~G~Y~E~-V~i~~~-k~-~i~l~G~g~-----~-------~TiIt~--~~~~--- 306 (548)
T PLN02301 247 KYKTVKEAVASAPDNSKTRYVIYVKKGTYKEN-VEIGKK-KK-NLMLVGDGM-----D-------STIITG--SLNV--- 306 (548)
T ss_pred CcccHHHHHHhhhhcCCceEEEEEeCceeeEE-EEecCC-Cc-eEEEEecCC-----C-------CcEEEe--CCcc---
Confidence 5678999997763322 124789999999643 344211 24 888888761 0 001110 0000
Q ss_pred ceeEeCCCccccccccCCCCCCCCCeeEEEEeecceEEEeEEEecCCc----eeEEEe-ceeeEEEEeEEEEcCCCCCCC
Q 041993 121 SGILDGQGTALWACKNSGKNCPSGATSMGFSNCNNIAINGLTSLNSQM----YHVVFN-GCNNVKLKGVKVLASGNSPNT 195 (391)
Q Consensus 121 GG~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~n~~~----~~i~~~-~~~nv~i~n~~i~~~~~~~~~ 195 (391)
.||.+ .-...-.....+++..+|+++.|... ..+-+. .++...+++|.|....|
T Consensus 307 ---~dg~~--------------T~~SaT~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~QD---- 365 (548)
T PLN02301 307 ---IDGST--------------TFRSATVAAVGDGFIAQDIWFQNTAGPEKHQAVALRVSADQAVINRCRIDAYQD---- 365 (548)
T ss_pred ---CCCCC--------------ceeeEEEEEECCceEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeeeeccc----
Confidence 01110 01112344567888899999988643 233333 46788999999987443
Q ss_pred CceeeeccccEEEEeeEEecCCceEEeCCCceeEEEEeeEEcCCc------e-EEEeecCCCCCCCcEEEEEEEeeEEeC
Q 041993 196 DGIHVQLSSDVTILNTRISTGDDCVSIGPGTSNLWIENVACGPGH------G-ISIGSLGKDLNEAGVQNVTVKTVTFTG 268 (391)
Q Consensus 196 DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~nv~i~n~~~~~~~------g-i~igs~g~~~~~~~i~nI~i~n~~~~~ 268 (391)
-+... +..-..++|.|...=|-| .|.....++||++..-. + |.- .+. .+...-..+.|.||.+..
T Consensus 366 -TLy~~-~~Rqyy~~C~I~GtVDFI---FG~a~avfq~c~i~~~~~~~~~~~~iTA--qgr-~~~~~~tG~vf~~c~i~~ 437 (548)
T PLN02301 366 -TLYAH-SLRQFYRDSYITGTVDFI---FGNAAVVFQNCKIVARKPMAGQKNMVTA--QGR-TDPNQNTGISIQKCDIIA 437 (548)
T ss_pred -cceec-CCcEEEEeeEEEecccee---cccceeEEeccEEEEecCCCCCCceEEe--cCC-CCCCCCCEEEEEeeEEec
Confidence 23322 345688999999754433 23568889999986421 2 222 111 112234578899999987
Q ss_pred CceEEE----EEEecCCCCeeEEEEEEEEEEEecC
Q 041993 269 TQNGLR----IKSWGRPSNGFARNILFRNAIMKNV 299 (391)
Q Consensus 269 ~~~gi~----i~~~~~~~~g~i~nI~~~ni~~~~~ 299 (391)
...... .+.+=|..+.....++|.+..|.+.
T Consensus 438 ~~~~~~~~~~~~~yLGRPW~~ysr~V~~~s~l~~~ 472 (548)
T PLN02301 438 SSDLEPVKGSFKTYLGRPWKEYSRTVVMQSYIDDH 472 (548)
T ss_pred CccccccccccceeeecCCCCCceEEEEecccCCe
Confidence 532110 1111122444566778888777653
No 73
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=96.78 E-value=0.026 Score=52.55 Aligned_cols=123 Identities=16% Similarity=0.194 Sum_probs=79.8
Q ss_pred EEEEeecceEEEeEEEec-CCceeEEEeceeeEEEEeEEEEcCCCCCCCCceeeeccccEEEEeeEEecCCceEEeCCCc
Q 041993 148 MGFSNCNNIAINGLTSLN-SQMYHVVFNGCNNVKLKGVKVLASGNSPNTDGIHVQLSSDVTILNTRISTGDDCVSIGPGT 226 (391)
Q Consensus 148 i~~~~~~nv~i~~v~i~n-~~~~~i~~~~~~nv~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~ 226 (391)
+.+.-|.|.+|.|+--.. ...+++.+.+.+||.|+|++|+.. ...|+ .+|+|.+..+.
T Consensus 95 ~~iki~sNkTivG~g~~a~~~g~gl~i~~a~NVIirNltf~~~---~~~d~------------------~~D~Isi~~~~ 153 (345)
T COG3866 95 ITIKIGSNKTIVGSGADATLVGGGLKIRDAGNVIIRNLTFEGF---YQGDP------------------NYDAISIYDDG 153 (345)
T ss_pred EEEeeccccEEEeeccccEEEeceEEEEeCCcEEEEeeEEEee---ccCCC------------------CCCcEEeccCC
Confidence 667777777777765321 234566666677777777777651 22222 15889886669
Q ss_pred eeEEEEeeEEcCC---------ce-EEEeecCCCCCCCcEEEEEEEeeEEeCCceEEEEEEecCC-CCeeEEEEEEEEEE
Q 041993 227 SNLWIENVACGPG---------HG-ISIGSLGKDLNEAGVQNVTVKTVTFTGTQNGLRIKSWGRP-SNGFARNILFRNAI 295 (391)
Q Consensus 227 ~nv~i~n~~~~~~---------~g-i~igs~g~~~~~~~i~nI~i~n~~~~~~~~gi~i~~~~~~-~~g~i~nI~~~ni~ 295 (391)
+||-|.+|++..+ +| +-| ..+...|+|+++.+.+.....-+.+.-.. ....-.+|++.+..
T Consensus 154 ~nIWIDH~tf~~~s~~~~~~h~DGl~Di--------k~~AnyITiS~n~fhdh~Kssl~G~sD~~~~~~~~~kvT~hhNy 225 (345)
T COG3866 154 HNIWIDHNTFSGGSYNASGSHGDGLVDI--------KKDANYITISYNKFHDHDKSSLLGSSDSSNYDDGKYKVTIHHNY 225 (345)
T ss_pred eEEEEEeeEeccccccccccCCCccEEe--------ccCCcEEEEEeeeeecCCeeeeeccCCcccccCCceeEEEeccc
Confidence 9999999999752 23 444 23457899999999999888766543210 11234567777777
Q ss_pred EecC
Q 041993 296 MKNV 299 (391)
Q Consensus 296 ~~~~ 299 (391)
+++.
T Consensus 226 Fkn~ 229 (345)
T COG3866 226 FKNL 229 (345)
T ss_pred cccc
Confidence 7664
No 74
>PF12218 End_N_terminal: N terminal extension of bacteriophage endosialidase; InterPro: IPR024429 This entry represents the N-terminal extension domain of endosialidases which is approximately 70 amino acids in length. The two N-terminal domains (this domain and the beta propeller) assemble in the compact 'cap' whereas the C-terminal domain forms an extended tail-like structure. The very N-terminal part of the 'cap' region (residues 246 to 312) holds the only alpha-helix of the protein and is presumably the residual part of the deleted N-terminal head-binding domain [].; PDB: 3JU4_A 3GVL_A 3GVK_B 3GVJ_A 1V0E_B 1V0F_E.
Probab=96.64 E-value=0.0028 Score=44.15 Aligned_cols=41 Identities=27% Similarity=0.216 Sum_probs=23.3
Q ss_pred ccCCCCcccHHHHHHHHHHHcCCCCCcEEEEcCCeEEEeeeeee
Q 041993 34 AKPDGRTDSTKAFLSAWANACGSPRAATIYVPPGRFFLRNVAFQ 77 (391)
Q Consensus 34 a~~dg~~d~t~aiq~Ai~~a~~~~~g~~v~ip~G~Y~~~~~~l~ 77 (391)
|++||++|||+||.++|++. +.|..|---.=||.+.++.-.
T Consensus 1 A~GDGvtdDt~A~~a~l~a~---~~g~~IDg~GlTykVs~lPd~ 41 (67)
T PF12218_consen 1 AKGDGVTDDTAAITAALEAS---PVGRKIDGAGLTYKVSSLPDI 41 (67)
T ss_dssp ---CCCCE-HHHHHHHHHHS----TTS-EE-TT-EEEESS---G
T ss_pred CCCccccCcHHHHHHHHhcc---CCCeEEecCCceEEEeeCccH
Confidence 68999999999999999754 344444444448999876544
No 75
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=96.29 E-value=1.2 Score=43.41 Aligned_cols=169 Identities=15% Similarity=0.148 Sum_probs=100.6
Q ss_pred eecCCccCCCCcccHHHHHHHHHHHcCCCCCcEEEEcCC-eEEEe-eeeeeCCccCccEEEEEcc-EEEecc-CccccCC
Q 041993 29 VVSFGAKPDGRTDSTKAFLSAWANACGSPRAATIYVPPG-RFFLR-NVAFQGPCKNNRITIRIDG-TLVAPS-DYRVIGN 104 (391)
Q Consensus 29 v~d~Ga~~dg~~d~t~aiq~Ai~~a~~~~~g~~v~ip~G-~Y~~~-~~~l~~~~~s~~~~l~~~G-~l~~~~-~~~~~~~ 104 (391)
|+.|=..|+. | +.+||+. ...|.+-|| +|.+. ++.++ + ...+.+.| +++... +...|..
T Consensus 46 vkt~~~~P~e--D----le~~I~~------haKVaL~Pg~~Y~i~~~V~I~----~-~cYIiGnGA~V~v~~~~~~~f~v 108 (386)
T PF01696_consen 46 VKTYWMEPGE--D----LEEAIRQ------HAKVALRPGAVYVIRKPVNIR----S-CCYIIGNGATVRVNGPDRVAFRV 108 (386)
T ss_pred EEEEEcCCCc--C----HHHHHHh------cCEEEeCCCCEEEEeeeEEec----c-eEEEECCCEEEEEeCCCCceEEE
Confidence 5566666663 4 3445533 235777666 79875 78887 4 68888887 555421 2211211
Q ss_pred ----CCceEEEEeeeeeEEeceeEeCCCccccccccCCCCCCCCCeeEEEEeecceEEEeEEEecCCceeEEEeceeeEE
Q 041993 105 ----AGNWLFFQHVDGVTLNSGILDGQGTALWACKNSGKNCPSGATSMGFSNCNNIAINGLTSLNSQMYHVVFNGCNNVK 180 (391)
Q Consensus 105 ----~~~~i~~~~~~ni~I~GG~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~n~~~~~i~~~~~~nv~ 180 (391)
..|. +.+..+|++.+-.+++.+ ...++.+....++.+.|+.+.+.....+... ....
T Consensus 109 ~~~~~~P~--V~gM~~VtF~ni~F~~~~---------------~~~g~~f~~~t~~~~hgC~F~gf~g~cl~~~--~~~~ 169 (386)
T PF01696_consen 109 CMQSMGPG--VVGMEGVTFVNIRFEGRD---------------TFSGVVFHANTNTLFHGCSFFGFHGTCLESW--AGGE 169 (386)
T ss_pred EcCCCCCe--EeeeeeeEEEEEEEecCC---------------ccceeEEEecceEEEEeeEEecCcceeEEEc--CCcE
Confidence 1232 234666777665565443 1235667778888888888888777776665 4677
Q ss_pred EEeEEEEcCCCCCCCCceeeeccccEEEEeeEEecCCceEEeCCCceeEEEEeeEEcCCce
Q 041993 181 LKGVKVLASGNSPNTDGIHVQLSSDVTILNTRISTGDDCVSIGPGTSNLWIENVACGPGHG 241 (391)
Q Consensus 181 i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~nv~i~n~~~~~~~g 241 (391)
++++++.+.. -|+.-.+-..+.|++|.|...-=|| .+ ..+..|++|.+.+..-
T Consensus 170 VrGC~F~~C~-----~gi~~~~~~~lsVk~C~FekC~igi--~s-~G~~~i~hn~~~ec~C 222 (386)
T PF01696_consen 170 VRGCTFYGCW-----KGIVSRGKSKLSVKKCVFEKCVIGI--VS-EGPARIRHNCASECGC 222 (386)
T ss_pred EeeeEEEEEE-----EEeecCCcceEEeeheeeeheEEEE--Ee-cCCeEEecceecccce
Confidence 7888876643 2444444566778888887543333 22 3467777777766554
No 76
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism]
Probab=95.63 E-value=0.18 Score=47.47 Aligned_cols=47 Identities=17% Similarity=0.046 Sum_probs=29.5
Q ss_pred ccHHHHHHHHHHHcCCCC--CcEEEEcCCeEEEeeeeeeCCccC-ccEEEEEcc
Q 041993 41 DSTKAFLSAWANACGSPR--AATIYVPPGRFFLRNVAFQGPCKN-NRITIRIDG 91 (391)
Q Consensus 41 d~t~aiq~Ai~~a~~~~~--g~~v~ip~G~Y~~~~~~l~~~~~s-~~~~l~~~G 91 (391)
++-..||+|+++|..+.. -..+.+.+|.|.- .+..+. + ..++|++++
T Consensus 92 ~~f~TIQaAvdaA~~~~~~kr~yI~vk~GvY~e-~v~Vp~---~~~~ITLyGed 141 (405)
T COG4677 92 VTFTTIQAAVDAAIIKRTNKRQYIAVKAGVYQE-TVYVPA---APGGITLYGED 141 (405)
T ss_pred cchHHHHHHHhhhcccCCCceEEEEEccceece-eEEecC---CCCceeEEecC
Confidence 566789999987643322 3466778999943 234432 2 148888864
No 77
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue. It catalyses the eliminative cleavage of pectate to produce oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. Pectate lyase is an extracellular enzyme and is induced by pectin. It is subject to self-catabolite repression, and has been implicated in plant disease. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail []. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization.; GO: 0030570 pectate lyase activity, 0005576 extracellular region; PDB: 3T9G_B 3B90_B 3B8Y_A 3B4N_B 1EE6_A.
Probab=95.18 E-value=2.3 Score=38.27 Aligned_cols=40 Identities=20% Similarity=0.219 Sum_probs=19.1
Q ss_pred CCceeeeccccEEEEeeEEec-CCceEEeCCCceeEEEEeeEE
Q 041993 195 TDGIHVQLSSDVTILNTRIST-GDDCVSIGPGTSNLWIENVAC 236 (391)
Q Consensus 195 ~DGi~~~~s~nv~I~n~~i~~-~dD~i~i~~~~~nv~i~n~~~ 236 (391)
.||||... +-+|+|+.++. +.|++.++.....++|.+.-.
T Consensus 75 ~dGIHC~G--~Ctl~NVwwedVcEDA~T~kg~~~~~~I~ggga 115 (215)
T PF03211_consen 75 ADGIHCKG--SCTLENVWWEDVCEDAATFKGDGGTVTIIGGGA 115 (215)
T ss_dssp TT-EEEES--CEEEEEEEESS-SSESEEEESSEEEEEEESTEE
T ss_pred cCceEEcC--CEEEEEEEecccceeeeEEcCCCceEEEeCCcc
Confidence 35555554 45555555544 455555555333444444433
No 78
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue. It catalyses the eliminative cleavage of pectate to produce oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. Pectate lyase is an extracellular enzyme and is induced by pectin. It is subject to self-catabolite repression, and has been implicated in plant disease. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail []. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization.; GO: 0030570 pectate lyase activity, 0005576 extracellular region; PDB: 3T9G_B 3B90_B 3B8Y_A 3B4N_B 1EE6_A.
Probab=94.63 E-value=1.6 Score=39.22 Aligned_cols=134 Identities=16% Similarity=0.082 Sum_probs=81.0
Q ss_pred eecceEEEeEEEecCCceeEEEeceeeEEEEeEEEEcCCCCCCCCceeeeccc-cEEEEeeEEecCCceEEeCCCceeEE
Q 041993 152 NCNNIAINGLTSLNSQMYHVVFNGCNNVKLKGVKVLASGNSPNTDGIHVQLSS-DVTILNTRISTGDDCVSIGPGTSNLW 230 (391)
Q Consensus 152 ~~~nv~i~~v~i~n~~~~~i~~~~~~nv~i~n~~i~~~~~~~~~DGi~~~~s~-nv~I~n~~i~~~dD~i~i~~~~~nv~ 230 (391)
--+..+++++-|-.+...+||-.+ +.+|+|+.+..- ..|.+.+.... .++|.+.-.++.+|=+--..+...++
T Consensus 59 le~GatlkNvIiG~~~~dGIHC~G--~Ctl~NVwwedV----cEDA~T~kg~~~~~~I~ggga~~A~DKV~Q~Ng~Gtv~ 132 (215)
T PF03211_consen 59 LEDGATLKNVIIGANQADGIHCKG--SCTLENVWWEDV----CEDAATFKGDGGTVTIIGGGARNASDKVFQHNGGGTVT 132 (215)
T ss_dssp EETTEEEEEEEETSS-TT-EEEES--CEEEEEEEESS-----SSESEEEESSEEEEEEESTEEEEEEEEEEEE-SSEEEE
T ss_pred ecCCCEEEEEEEcCCCcCceEEcC--CEEEEEEEeccc----ceeeeEEcCCCceEEEeCCcccCCCccEEEecCceeEE
Confidence 357899999999777778899887 899999999885 34788888766 78888888888655544444456788
Q ss_pred EEeeEEcCCceEEEeecCCCCCC-CcEEEEEEEeeEEeCCceEEEEEEecCCCCeeEEEEEEEE
Q 041993 231 IENVACGPGHGISIGSLGKDLNE-AGVQNVTVKTVTFTGTQNGLRIKSWGRPSNGFARNILFRN 293 (391)
Q Consensus 231 i~n~~~~~~~gi~igs~g~~~~~-~~i~nI~i~n~~~~~~~~gi~i~~~~~~~~g~i~nI~~~n 293 (391)
|+|.+... .|--+-|-|.-... +.-+++.+++........-+.|....+ +...++++.++.
T Consensus 133 I~nF~a~d-~GKl~RSCGnC~~~~~~~r~v~v~~~~~~~~~~~~giN~N~g-D~ati~~~~~~~ 194 (215)
T PF03211_consen 133 IKNFYAED-FGKLYRSCGNCSNNGGPRRHVVVNNVVAGPGNSLVGINRNYG-DTATISNSCIKG 194 (215)
T ss_dssp EEEEEEEE-EEEEEEE-TTETS----EEEEEEEEEEEEEEEEEEEEEEGGT-TTEEEEEEEEEE
T ss_pred EEeEEEcC-CCEEEEeCCCCCCCCCcceEEEEeeEEecCCcEEEEEECCCC-CeEEEEEEEecC
Confidence 88855432 23112222221111 234556666655443322334444444 555666666555
No 79
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=93.85 E-value=0.085 Score=34.64 Aligned_cols=39 Identities=26% Similarity=0.239 Sum_probs=17.7
Q ss_pred ceeeeccccEEEEeeEEecCCceEEeCCCceeEEEEeeEE
Q 041993 197 GIHVQLSSDVTILNTRISTGDDCVSIGPGTSNLWIENVAC 236 (391)
Q Consensus 197 Gi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~nv~i~n~~~ 236 (391)
||.++.|.+.+|+++.+....+||.+.. +.+-+++++.+
T Consensus 1 GI~l~~s~~~~i~~N~i~~~~~GI~~~~-s~~n~i~~N~~ 39 (44)
T TIGR03804 1 GIYLESSSNNTLENNTASNNSYGIYLTD-SSNNTLSNNTA 39 (44)
T ss_pred CEEEEecCCCEEECcEEeCCCCEEEEEe-CCCCEeECCEE
Confidence 3444444444455555554444544444 33334444333
No 80
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=93.63 E-value=5.5 Score=39.02 Aligned_cols=107 Identities=12% Similarity=0.097 Sum_probs=60.5
Q ss_pred eecceEEEeEEEecCC-ceeEEEeceeeEEEEeEEEEcCCCCCCCCceeeeccccEEEEeeEEecCCceEEeCCCceeEE
Q 041993 152 NCNNIAINGLTSLNSQ-MYHVVFNGCNNVKLKGVKVLASGNSPNTDGIHVQLSSDVTILNTRISTGDDCVSIGPGTSNLW 230 (391)
Q Consensus 152 ~~~nv~i~~v~i~n~~-~~~i~~~~~~nv~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~nv~ 230 (391)
+-.++++.|+.+...+ ..++-+....++++.++.+.+. .. .-++......|++|.|...--|+.-. +...+.
T Consensus 119 gM~~VtF~ni~F~~~~~~~g~~f~~~t~~~~hgC~F~gf----~g--~cl~~~~~~~VrGC~F~~C~~gi~~~-~~~~ls 191 (386)
T PF01696_consen 119 GMEGVTFVNIRFEGRDTFSGVVFHANTNTLFHGCSFFGF----HG--TCLESWAGGEVRGCTFYGCWKGIVSR-GKSKLS 191 (386)
T ss_pred eeeeeEEEEEEEecCCccceeEEEecceEEEEeeEEecC----cc--eeEEEcCCcEEeeeEEEEEEEEeecC-CcceEE
Confidence 4456777777776655 4556666667777777777763 22 23333356777777776544444332 256677
Q ss_pred EEeeEEcCCc-eEEEeecCCCCCCCcEEEEEEEeeEEeCCceEEEEE
Q 041993 231 IENVACGPGH-GISIGSLGKDLNEAGVQNVTVKTVTFTGTQNGLRIK 276 (391)
Q Consensus 231 i~n~~~~~~~-gi~igs~g~~~~~~~i~nI~i~n~~~~~~~~gi~i~ 276 (391)
|++|.|.-+. ||. ++| +..+++|.+.++.-.+.++
T Consensus 192 Vk~C~FekC~igi~--s~G---------~~~i~hn~~~ec~Cf~l~~ 227 (386)
T PF01696_consen 192 VKKCVFEKCVIGIV--SEG---------PARIRHNCASECGCFVLMK 227 (386)
T ss_pred eeheeeeheEEEEE--ecC---------CeEEecceecccceEEEEc
Confidence 7777775543 442 221 2345566666654444333
No 81
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=92.50 E-value=0.22 Score=32.62 Aligned_cols=40 Identities=25% Similarity=0.272 Sum_probs=30.3
Q ss_pred EEEeceeeEEEEeEEEEcCCCCCCCCceeeeccccEEEEeeEEec
Q 041993 171 VVFNGCNNVKLKGVKVLASGNSPNTDGIHVQLSSDVTILNTRIST 215 (391)
Q Consensus 171 i~~~~~~nv~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~ 215 (391)
+.+..+.+.+|++.++.. +.+||++..|++-+|+++.+..
T Consensus 2 I~l~~s~~~~i~~N~i~~-----~~~GI~~~~s~~n~i~~N~~~~ 41 (44)
T TIGR03804 2 IYLESSSNNTLENNTASN-----NSYGIYLTDSSNNTLSNNTASS 41 (44)
T ss_pred EEEEecCCCEEECcEEeC-----CCCEEEEEeCCCCEeECCEEEc
Confidence 566677777788888876 4468888888888888887764
No 82
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=91.79 E-value=6.9 Score=36.11 Aligned_cols=135 Identities=18% Similarity=0.221 Sum_probs=70.4
Q ss_pred EEEeceeeEEEEeEEEEcCCCCCCCCceeeeccccEEEEeeEEec-CCceEEeCCCceeEEEEeeEEcCCceEEEeecCC
Q 041993 171 VVFNGCNNVKLKGVKVLASGNSPNTDGIHVQLSSDVTILNTRIST-GDDCVSIGPGTSNLWIENVACGPGHGISIGSLGK 249 (391)
Q Consensus 171 i~~~~~~nv~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~-~dD~i~i~~~~~nv~i~n~~~~~~~gi~igs~g~ 249 (391)
+.+....+.+|++++|.++.. ...-|+.+.++ +.+|+||+|.+ ..+ |+.+-...
T Consensus 91 ~tI~~~~~~~i~GvtItN~n~-~~g~Gi~Iess-~~tI~Nntf~~~~~~----------------------GI~v~g~~- 145 (246)
T PF07602_consen 91 VTIILANNATISGVTITNPNI-ARGTGIWIESS-SPTIANNTFTNNGRE----------------------GIFVTGTS- 145 (246)
T ss_pred EEEEecCCCEEEEEEEEcCCC-CcceEEEEecC-CcEEEeeEEECCccc----------------------cEEEEeee-
Confidence 445556778888888888621 13345666554 66666666665 233 33331110
Q ss_pred CCCCCcEEEEEEEeeEEeCCceEEEEEEecCCCCeeEEEEEEEEEEEecCCccEEEEeeeCCCCCCCCC-CCcceEEEeE
Q 041993 250 DLNEAGVQNVTVKTVTFTGTQNGLRIKSWGRPSNGFARNILFRNAIMKNVQNPIIIDQNYCPDNIGCPG-QVSGVKISDV 328 (391)
Q Consensus 250 ~~~~~~i~nI~i~n~~~~~~~~gi~i~~~~~~~~g~i~nI~~~ni~~~~~~~~i~i~~~~~~~~~~~~~-~~~~~~i~nI 328 (391)
....+.++.|+++.+.....|+.+..... + +. ..++|..+++...++.+.... +.-+.... .++.-.|++-
T Consensus 146 --~~~~i~~~vI~GN~~~~~~~Gi~i~~~~~---~-~~-n~I~NN~I~~N~~Gi~~~~~~-pDlG~~s~~~~g~N~~~~N 217 (246)
T PF07602_consen 146 --ANPGINGNVISGNSIYFNKTGISISDNAA---P-VE-NKIENNIIENNNIGIVAIGDA-PDLGTGSEGSPGNNIFRNN 217 (246)
T ss_pred --cCCcccceEeecceEEecCcCeEEEcccC---C-cc-ceeeccEEEeCCcCeEeeccC-CccccCCCCCCCCcEEecC
Confidence 02356667788888877777777764322 1 22 233556666555566655433 11111011 1222356666
Q ss_pred EEEeEEEeeC
Q 041993 329 TYQDVHGTSA 338 (391)
Q Consensus 329 ~~~ni~~~~~ 338 (391)
..-|+.....
T Consensus 218 ~~~Dl~~~~~ 227 (246)
T PF07602_consen 218 GRYDLNNSAT 227 (246)
T ss_pred cceeeEeccC
Confidence 6666666433
No 83
>PF09251 PhageP22-tail: Salmonella phage P22 tail-spike; InterPro: IPR015331 This entry is represented by the Bacteriophage P22, Gp9, tailspike protein (TSP). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The TSP C-terminal domain adopts a structure that consists of a single-stranded right-handed beta-helix, which in turn is made of parallel beta-strands and short turns. They are required for recognition of the 0-antigenic repeating units of the cell surface, and for subsequent infection of the bacterial cell by the phage []. ; PDB: 1QA3_A 1QRB_A 2XC1_C 1QA2_A 1TYX_A 2VFQ_A 2VFO_A 1TYU_A 2VFN_A 1QA1_A ....
Probab=91.20 E-value=11 Score=37.20 Aligned_cols=22 Identities=18% Similarity=0.232 Sum_probs=10.9
Q ss_pred ceeEEEEeeEEcCC--ceEEEeec
Q 041993 226 TSNLWIENVACGPG--HGISIGSL 247 (391)
Q Consensus 226 ~~nv~i~n~~~~~~--~gi~igs~ 247 (391)
+.|+.+++...-.. +|+-+++.
T Consensus 263 nYnLqF~d~~~i~~~~DG~Dl~aD 286 (549)
T PF09251_consen 263 NYNLQFRDSVTISPVWDGFDLGAD 286 (549)
T ss_dssp EBS-EEEEEEEES-SSESEEE-SS
T ss_pred eeeEEEeccceEEEeecceeccCC
Confidence 45667777665443 35665543
No 84
>PLN02682 pectinesterase family protein
Probab=90.87 E-value=17 Score=35.60 Aligned_cols=113 Identities=7% Similarity=0.023 Sum_probs=72.9
Q ss_pred eceeeEEEEeEEEEcCCCC-----CCCCceeee-ccccEEEEeeEEecCCceEEeCCCceeEEEEeeEEcCCceEEEeec
Q 041993 174 NGCNNVKLKGVKVLASGNS-----PNTDGIHVQ-LSSDVTILNTRISTGDDCVSIGPGTSNLWIENVACGPGHGISIGSL 247 (391)
Q Consensus 174 ~~~~nv~i~n~~i~~~~~~-----~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~~~~nv~i~n~~~~~~~gi~igs~ 247 (391)
...+++..+|++|.+.... .....+-+. ...++.+.+|.|....|-+.... ..-.++||+|.+.-.+=+|..
T Consensus 160 v~a~~F~a~nlTf~Nt~~~~~~g~~g~QAVAL~v~gDr~~fy~C~f~G~QDTLy~~~--gRqyf~~C~IeG~VDFIFG~g 237 (369)
T PLN02682 160 VNSPYFIAKNITFKNTAPVPPPGALGKQAVALRISADTAAFYGCKFLGAQDTLYDHL--GRHYFKDCYIEGSVDFIFGNG 237 (369)
T ss_pred EECCCeEEEeeEEEcccccCCCCCCcccEEEEEecCCcEEEEcceEeccccceEECC--CCEEEEeeEEcccccEEecCc
Confidence 3456888999999885321 111223332 25899999999999888776654 457899999988777766542
Q ss_pred CCCCCCCcEEEEEEEeeEEeCCc--eEEEEEEecCCCCeeEEEEEEEEEEEecC
Q 041993 248 GKDLNEAGVQNVTVKTVTFTGTQ--NGLRIKSWGRPSNGFARNILFRNAIMKNV 299 (391)
Q Consensus 248 g~~~~~~~i~nI~i~n~~~~~~~--~gi~i~~~~~~~~g~i~nI~~~ni~~~~~ 299 (391)
...|++|.+.... .| .|..........-....|.|+++...
T Consensus 238 ----------~a~Fe~C~I~s~~~~~G-~ITA~~r~~~~~~~GfvF~~C~itg~ 280 (369)
T PLN02682 238 ----------LSLYEGCHLHAIARNFG-ALTAQKRQSVLEDTGFSFVNCKVTGS 280 (369)
T ss_pred ----------eEEEEccEEEEecCCCe-EEecCCCCCCCCCceEEEEeeEecCC
Confidence 4678888886432 23 23322111112235788999999864
No 85
>PLN02665 pectinesterase family protein
Probab=89.34 E-value=7.4 Score=38.11 Aligned_cols=115 Identities=10% Similarity=0.078 Sum_probs=74.2
Q ss_pred EeceeeEEEEeEEEEcCCCC-----CCCC--ceeeeccccEEEEeeEEecCCceEEeCCCceeEEEEeeEEcCCceEEEe
Q 041993 173 FNGCNNVKLKGVKVLASGNS-----PNTD--GIHVQLSSDVTILNTRISTGDDCVSIGPGTSNLWIENVACGPGHGISIG 245 (391)
Q Consensus 173 ~~~~~nv~i~n~~i~~~~~~-----~~~D--Gi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~nv~i~n~~~~~~~gi~ig 245 (391)
...+++++.+|++|.+.... .... .+.+. .....+.||.|....|-+.... ..-.++||+|.+.-.+=+|
T Consensus 150 ~v~a~~F~a~nitf~Nta~~~~~~~~g~QAVAl~v~-gDka~f~~C~f~G~QDTL~~~~--gr~yf~~CyIeG~VDFIFG 226 (366)
T PLN02665 150 IVESDYFMAANIIIKNSAPRPDGKRKGAQAVAMRIS-GDKAAFYNCRFIGFQDTLCDDK--GRHFFKDCYIEGTVDFIFG 226 (366)
T ss_pred EEECCCeEEEeeEEEeCCCCcCCCCCCcceEEEEEc-CCcEEEEcceeccccceeEeCC--CCEEEEeeEEeeccceecc
Confidence 34568899999999985321 1112 23333 5889999999999888776544 4578999999877676665
Q ss_pred ecCCCCCCCcEEEEEEEeeEEeCCceE--EEEEEecCCCCeeEEEEEEEEEEEecCC
Q 041993 246 SLGKDLNEAGVQNVTVKTVTFTGTQNG--LRIKSWGRPSNGFARNILFRNAIMKNVQ 300 (391)
Q Consensus 246 s~g~~~~~~~i~nI~i~n~~~~~~~~g--i~i~~~~~~~~g~i~nI~~~ni~~~~~~ 300 (391)
.. ...|++|++.-...+ -.|..........-....|.|+++....
T Consensus 227 ~g----------~a~fe~C~i~s~~~~~~g~ITA~~r~~~~~~~GfvF~~C~itg~~ 273 (366)
T PLN02665 227 SG----------KSLYLNTELHVVGDGGLRVITAQARNSEAEDSGFSFVHCKVTGTG 273 (366)
T ss_pred cc----------ceeeEccEEEEecCCCcEEEEcCCCCCCCCCceEEEEeeEEecCC
Confidence 52 356888888754332 1233222111123346789999998754
No 86
>PLN02480 Probable pectinesterase
Probab=89.13 E-value=8.6 Score=37.33 Aligned_cols=111 Identities=6% Similarity=0.054 Sum_probs=73.6
Q ss_pred ceeeEEEEeEEEEcCCC---C--CCCCceeee-ccccEEEEeeEEecCCceEEeCCCceeEEEEeeEEcCCceEEEeecC
Q 041993 175 GCNNVKLKGVKVLASGN---S--PNTDGIHVQ-LSSDVTILNTRISTGDDCVSIGPGTSNLWIENVACGPGHGISIGSLG 248 (391)
Q Consensus 175 ~~~nv~i~n~~i~~~~~---~--~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~~~~nv~i~n~~~~~~~gi~igs~g 248 (391)
..++++++|++|.+... . ...-++-+. .+.++.+.||.|....|-+.... ..-.++||+|.+.-.+=+|.
T Consensus 130 ~a~~f~a~nLTf~Nta~~g~~~~~~~QAVAl~v~gDra~f~~c~f~G~QDTLy~~~--gR~yf~~C~IeG~VDFIFG~-- 205 (343)
T PLN02480 130 EAPHFVAFGISIRNDAPTGMAFTSENQSVAAFVGADKVAFYHCAFYSTHNTLFDYK--GRHYYHSCYIQGSIDFIFGR-- 205 (343)
T ss_pred ECCCEEEEeeEEEecCCCCCCCCCCCceEEEEecCCcEEEEeeEEecccceeEeCC--CCEEEEeCEEEeeeeEEccc--
Confidence 45789999999998631 1 122355553 46899999999999888766543 46789999997766666654
Q ss_pred CCCCCCcEEEEEEEeeEEeCCc------eEEEEEEecCCCCeeEEEEEEEEEEEecC
Q 041993 249 KDLNEAGVQNVTVKTVTFTGTQ------NGLRIKSWGRPSNGFARNILFRNAIMKNV 299 (391)
Q Consensus 249 ~~~~~~~i~nI~i~n~~~~~~~------~gi~i~~~~~~~~g~i~nI~~~ni~~~~~ 299 (391)
-...|+||.+.... .|. |..+.. ....-....|.|+++...
T Consensus 206 --------g~a~fe~C~i~s~~~~~~~~~G~-ITA~~r-~~~~~~GfvF~~C~i~g~ 252 (343)
T PLN02480 206 --------GRSIFHNCEIFVIADRRVKIYGS-ITAHNR-ESEDNSGFVFIKGKVYGI 252 (343)
T ss_pred --------eeEEEEccEEEEecCCCCCCceE-EEcCCC-CCCCCCEEEEECCEEccc
Confidence 24678888887542 132 332222 112334688999999764
No 87
>PLN02468 putative pectinesterase/pectinesterase inhibitor
Probab=87.84 E-value=14 Score=38.38 Aligned_cols=114 Identities=7% Similarity=0.044 Sum_probs=74.1
Q ss_pred ceeeEEEEeEEEEcCCCCCCCCceeee-ccccEEEEeeEEecCCceEEeCCCceeEEEEeeEEcCCceEEEeecCCCCCC
Q 041993 175 GCNNVKLKGVKVLASGNSPNTDGIHVQ-LSSDVTILNTRISTGDDCVSIGPGTSNLWIENVACGPGHGISIGSLGKDLNE 253 (391)
Q Consensus 175 ~~~nv~i~n~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~~~~nv~i~n~~~~~~~gi~igs~g~~~~~ 253 (391)
..++++.+|++|.+.........+-+. .+....+.+|.|....|-+...+ ..-.+++|+|.+.-.+=+|..
T Consensus 343 ~~~~f~a~~itf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G~QDTLy~~~--~rq~y~~C~I~GtvDFIFG~a------ 414 (565)
T PLN02468 343 FGKGFMARDMGFRNTAGPIKHQAVALMSSADLSVFYRCTMDAFQDTLYAHA--QRQFYRECNIYGTVDFIFGNS------ 414 (565)
T ss_pred ECCCeEEEEEEEEeCCCCCCCceEEEEEcCCcEEEEEeEEEeccchhccCC--CceEEEeeEEecccceeeccc------
Confidence 457899999999886432222333333 35889999999999888777665 335699999987777766553
Q ss_pred CcEEEEEEEeeEEeCCc----eEEEEEEecCCCCeeEEEEEEEEEEEecCC
Q 041993 254 AGVQNVTVKTVTFTGTQ----NGLRIKSWGRPSNGFARNILFRNAIMKNVQ 300 (391)
Q Consensus 254 ~~i~nI~i~n~~~~~~~----~gi~i~~~~~~~~g~i~nI~~~ni~~~~~~ 300 (391)
...|+||.+.-.. ..-.|..........-..+.|.|+++....
T Consensus 415 ----~avfq~c~i~~~~~~~~~~~~iTA~~r~~~~~~~G~vf~~c~i~~~~ 461 (565)
T PLN02468 415 ----AVVFQNCNILPRRPMKGQQNTITAQGRTDPNQNTGISIQNCTILPLG 461 (565)
T ss_pred ----eEEEeccEEEEecCCCCCCceEEecCCCCCCCCceEEEEccEEecCC
Confidence 3678888886431 111333322112234457999999998653
No 88
>PLN02170 probable pectinesterase/pectinesterase inhibitor
Probab=87.79 E-value=19 Score=37.04 Aligned_cols=116 Identities=8% Similarity=0.099 Sum_probs=74.9
Q ss_pred EeceeeEEEEeEEEEcCCCCCCCCceeee-ccccEEEEeeEEecCCceEEeCCCceeEEEEeeEEcCCceEEEeecCCCC
Q 041993 173 FNGCNNVKLKGVKVLASGNSPNTDGIHVQ-LSSDVTILNTRISTGDDCVSIGPGTSNLWIENVACGPGHGISIGSLGKDL 251 (391)
Q Consensus 173 ~~~~~nv~i~n~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~~~~nv~i~n~~~~~~~gi~igs~g~~~ 251 (391)
....+++..+|++|.+.........+-+. ......+.+|.|....|-+...+ ..-.+++|+|.+.-.+=+|..
T Consensus 309 ~v~~~~F~a~nitf~Ntag~~~~QAVALrv~gDr~~fy~C~f~GyQDTLy~~~--~Rqyy~~C~I~GtVDFIFG~a---- 382 (529)
T PLN02170 309 AAMGDGFIARDITFVNSAGPNSEQAVALRVGSDKSVVYRCSVEGYQDSLYTHS--KRQFYRETDITGTVDFIFGNS---- 382 (529)
T ss_pred EEEcCCeEEEeeEEEecCCCCCCceEEEEecCCcEEEEeeeEeccCCcceeCC--CCEEEEeeEEccccceecccc----
Confidence 34457888999999886432222333332 25889999999999888877665 345779999988767666542
Q ss_pred CCCcEEEEEEEeeEEeCCce---EEEEEEecCCCCeeEEEEEEEEEEEecCC
Q 041993 252 NEAGVQNVTVKTVTFTGTQN---GLRIKSWGRPSNGFARNILFRNAIMKNVQ 300 (391)
Q Consensus 252 ~~~~i~nI~i~n~~~~~~~~---gi~i~~~~~~~~g~i~nI~~~ni~~~~~~ 300 (391)
...|+||.+.-... .-.|..........-..+.|.|+++....
T Consensus 383 ------~avFq~C~I~~~~~~~~~g~ITAq~R~~~~~~~Gfvf~~C~it~~~ 428 (529)
T PLN02170 383 ------AVVFQSCNIAARKPSGDRNYVTAQGRSDPNQNTGISIHNCRITAES 428 (529)
T ss_pred ------eEEEeccEEEEecCCCCceEEEecCCCCCCCCceEEEEeeEEecCC
Confidence 36688888865321 12333222112233456899999998753
No 89
>PLN02698 Probable pectinesterase/pectinesterase inhibitor
Probab=86.91 E-value=16 Score=37.44 Aligned_cols=139 Identities=6% Similarity=-0.018 Sum_probs=70.2
Q ss_pred EEeecceEEEeEEEecCCc----eeEEEe-ceeeEEEEeEEEEcCCCCCCCCceeeeccccEEEEeeEEecCCceEEeCC
Q 041993 150 FSNCNNIAINGLTSLNSQM----YHVVFN-GCNNVKLKGVKVLASGNSPNTDGIHVQLSSDVTILNTRISTGDDCVSIGP 224 (391)
Q Consensus 150 ~~~~~nv~i~~v~i~n~~~----~~i~~~-~~~nv~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~ 224 (391)
....+++..+|++|+|... ..+-+. ..+...+.+|.|....| -+... ...-.+++|.|...=|-|-
T Consensus 266 ~v~~~~F~a~nitf~Ntag~~~~QAvAl~v~~D~~~fy~c~~~G~QD-----TLy~~-~~rqyy~~C~I~G~vDFIF--- 336 (497)
T PLN02698 266 TITGDGFIARDIGFKNAAGPKGEQAIALSITSDHSVLYRCSIAGYQD-----TLYAA-ALRQFYRECDIYGTIDFIF--- 336 (497)
T ss_pred EEECCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeecccc-----hheeC-CCcEEEEeeEEEeccceEe---
Confidence 3467888888888887743 222222 35677777777776332 22222 2345667777776434332
Q ss_pred CceeEEEEeeEEcCC---ce--EEEeecCCCCCCCcEEEEEEEeeEEeCCceEEEE----EEecCCCCeeEEEEEEEEEE
Q 041993 225 GTSNLWIENVACGPG---HG--ISIGSLGKDLNEAGVQNVTVKTVTFTGTQNGLRI----KSWGRPSNGFARNILFRNAI 295 (391)
Q Consensus 225 ~~~nv~i~n~~~~~~---~g--i~igs~g~~~~~~~i~nI~i~n~~~~~~~~gi~i----~~~~~~~~g~i~nI~~~ni~ 295 (391)
|.....++||++... .+ -.|=..+. .....-..+.|.||++......... +.+=|........++|.+..
T Consensus 337 G~a~avf~~C~i~~~~~~~~~~~~iTAq~r-~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRPW~~ysr~vf~~s~ 415 (497)
T PLN02698 337 GNAAAVFQNCYLFLRRPHGKSYNVILANGR-SDPGQNTGFSLQSCRIRTSSDFSPVKHSYSSYLGRPWKKYSRAIVMESY 415 (497)
T ss_pred cccceeecccEEEEecCCCCCceEEEecCC-CCCCCCceEEEEeeEEecCCcccccccccceeccCCCCCCceEEEEecc
Confidence 234567777777531 11 01101111 1112234577777777765321111 11112233445566666666
Q ss_pred Eec
Q 041993 296 MKN 298 (391)
Q Consensus 296 ~~~ 298 (391)
|.+
T Consensus 416 l~~ 418 (497)
T PLN02698 416 IDD 418 (497)
T ss_pred cCC
Confidence 654
No 90
>PRK10531 acyl-CoA thioesterase; Provisional
Probab=86.44 E-value=35 Score=34.12 Aligned_cols=117 Identities=12% Similarity=0.109 Sum_probs=74.0
Q ss_pred EeceeeEEEEeEEEEcCCCC----CCCCceeee-ccccEEEEeeEEecCCceEEeCCC----------ceeEEEEeeEEc
Q 041993 173 FNGCNNVKLKGVKVLASGNS----PNTDGIHVQ-LSSDVTILNTRISTGDDCVSIGPG----------TSNLWIENVACG 237 (391)
Q Consensus 173 ~~~~~nv~i~n~~i~~~~~~----~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~~----------~~nv~i~n~~~~ 237 (391)
....++++.+|++|.+.... .....+-+. ....+.+.+|.|....|-+..... ...-.+++|+|.
T Consensus 202 ~v~ad~F~a~NLTf~Ntag~~~~~~~~QAVALrv~GDra~fy~C~flG~QDTLy~~~~~~~~~~~~~~~gRqYf~~CyIe 281 (422)
T PRK10531 202 WSQNNGLQLQNLTIENTLGDSVDAGNHPAVALRTDGDKVQIENVNILGRQDTFFVTNSGVQNRLETDRQPRTYVKNSYIE 281 (422)
T ss_pred EEECCCEEEEeeEEEeCCCCCCCCCcceeEEEEEcCCcEEEEeeEEecccceeeeccccccccccccccccEEEEeCEEe
Confidence 44668899999999986421 112223332 258899999999998887776321 225889999998
Q ss_pred CCceEEEeecCCCCCCCcEEEEEEEeeEEeCCce----EEEEEEecCCCCeeEEEEEEEEEEEecCC
Q 041993 238 PGHGISIGSLGKDLNEAGVQNVTVKTVTFTGTQN----GLRIKSWGRPSNGFARNILFRNAIMKNVQ 300 (391)
Q Consensus 238 ~~~gi~igs~g~~~~~~~i~nI~i~n~~~~~~~~----gi~i~~~~~~~~g~i~nI~~~ni~~~~~~ 300 (391)
+.-.+=+|.- ...|+||++.-... .-.|..... ....-...+|.|+++....
T Consensus 282 G~VDFIFG~g----------~AvFenC~I~s~~~~~~~~g~ITA~~t-~~~~~~GfvF~nCrit~~g 337 (422)
T PRK10531 282 GDVDFVFGRG----------AVVFDNTEFRVVNSRTQQEAYVFAPAT-LPNIYYGFLAINSRFNASG 337 (422)
T ss_pred ecccEEccCc----------eEEEEcCEEEEecCCCCCceEEEecCC-CCCCCCEEEEECCEEecCC
Confidence 7767666552 36688888865321 122322211 2223456899999998743
No 91
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional
Probab=86.39 E-value=2.2 Score=39.75 Aligned_cols=19 Identities=26% Similarity=0.371 Sum_probs=12.0
Q ss_pred ceeEEEEeeEEcCCceEEE
Q 041993 226 TSNLWIENVACGPGHGISI 244 (391)
Q Consensus 226 ~~nv~i~n~~~~~~~gi~i 244 (391)
|.|+.|.|+.+.++.|+-|
T Consensus 300 cdnfvidni~mvnsagmli 318 (464)
T PRK10123 300 CDNFVIDNIEMINSAGMLI 318 (464)
T ss_pred ccceEEeccccccccccEE
Confidence 6677777776666655444
No 92
>PLN02217 probable pectinesterase/pectinesterase inhibitor
Probab=85.49 E-value=12 Score=39.74 Aligned_cols=114 Identities=9% Similarity=0.134 Sum_probs=73.5
Q ss_pred ceeeEEEEeEEEEcCCCCCCCCceeee-ccccEEEEeeEEecCCceEEeCCCceeEEEEeeEEcCCceEEEeecCCCCCC
Q 041993 175 GCNNVKLKGVKVLASGNSPNTDGIHVQ-LSSDVTILNTRISTGDDCVSIGPGTSNLWIENVACGPGHGISIGSLGKDLNE 253 (391)
Q Consensus 175 ~~~nv~i~n~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~~~~nv~i~n~~~~~~~gi~igs~g~~~~~ 253 (391)
..+++..+|++|.+.........+-+. ......+.+|.|....|-+.... ..-.+++|+|.+.-.+=+|..
T Consensus 335 ~g~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~a------ 406 (670)
T PLN02217 335 VGDHFIAKNIGFENTAGAIKHQAVAIRVLSDESIFYNCKFDGYQDTLYAHS--HRQFYRDCTISGTIDFLFGDA------ 406 (670)
T ss_pred ECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeeeccchhccCC--CcEEEEeCEEEEeccEEecCc------
Confidence 457888889988886432223334443 25889999999999878776654 456889999977666666542
Q ss_pred CcEEEEEEEeeEEeCCc----eEEEEEEecCCCCeeEEEEEEEEEEEecCC
Q 041993 254 AGVQNVTVKTVTFTGTQ----NGLRIKSWGRPSNGFARNILFRNAIMKNVQ 300 (391)
Q Consensus 254 ~~i~nI~i~n~~~~~~~----~gi~i~~~~~~~~g~i~nI~~~ni~~~~~~ 300 (391)
...|+||.+.-.. ..-.|..........-..+.|.|+++....
T Consensus 407 ----~avfq~C~I~~r~~~~~~~~~ITAqgr~~~~~~tGfvf~~C~i~~~~ 453 (670)
T PLN02217 407 ----AAVFQNCTLLVRKPLLNQACPITAHGRKDPRESTGFVLQGCTIVGEP 453 (670)
T ss_pred ----eEEEEccEEEEccCCCCCceeEecCCCCCCCCCceEEEEeeEEecCc
Confidence 3678888886431 112333322112233457999999998753
No 93
>PLN02713 Probable pectinesterase/pectinesterase inhibitor
Probab=85.21 E-value=16 Score=38.14 Aligned_cols=114 Identities=9% Similarity=0.051 Sum_probs=72.6
Q ss_pred ceeeEEEEeEEEEcCCCCCCCCceeee-ccccEEEEeeEEecCCceEEeCCCceeEEEEeeEEcCCceEEEeecCCCCCC
Q 041993 175 GCNNVKLKGVKVLASGNSPNTDGIHVQ-LSSDVTILNTRISTGDDCVSIGPGTSNLWIENVACGPGHGISIGSLGKDLNE 253 (391)
Q Consensus 175 ~~~nv~i~n~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~~~~nv~i~n~~~~~~~gi~igs~g~~~~~ 253 (391)
..+++..+|++|.+.........+-+. .+....+.+|.|....|-+...+ ..-.+++|+|.+.-.+=+|..
T Consensus 338 ~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~a------ 409 (566)
T PLN02713 338 VGQNFVAVNITFRNTAGPAKHQAVALRSGADLSTFYSCSFEAYQDTLYTHS--LRQFYRECDIYGTVDFIFGNA------ 409 (566)
T ss_pred ECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeeccCCcceEECC--CCEEEEeeEEecccceecccc------
Confidence 457889999999886432223334333 25788999999999888777765 345889999977666666542
Q ss_pred CcEEEEEEEeeEEeCCc----eEEEEEEecCCCCeeEEEEEEEEEEEecCC
Q 041993 254 AGVQNVTVKTVTFTGTQ----NGLRIKSWGRPSNGFARNILFRNAIMKNVQ 300 (391)
Q Consensus 254 ~~i~nI~i~n~~~~~~~----~gi~i~~~~~~~~g~i~nI~~~ni~~~~~~ 300 (391)
...|+||.+.-.. ..-.|..........-..+.|.|+++....
T Consensus 410 ----~avfq~C~i~~~~~~~~~~~~iTAq~r~~~~~~~G~vf~~c~i~~~~ 456 (566)
T PLN02713 410 ----AVVFQNCNLYPRLPMQGQFNTITAQGRTDPNQNTGTSIQNCTIKAAD 456 (566)
T ss_pred ----eEEEeccEEEEecCCCCCcceeeecCCCCCCCCCEEEEEcCEEecCC
Confidence 3678888886431 111233222112223456899999998643
No 94
>PLN02301 pectinesterase/pectinesterase inhibitor
Probab=85.20 E-value=17 Score=37.71 Aligned_cols=114 Identities=8% Similarity=0.076 Sum_probs=73.6
Q ss_pred ceeeEEEEeEEEEcCCCCCCCCceeee-ccccEEEEeeEEecCCceEEeCCCceeEEEEeeEEcCCceEEEeecCCCCCC
Q 041993 175 GCNNVKLKGVKVLASGNSPNTDGIHVQ-LSSDVTILNTRISTGDDCVSIGPGTSNLWIENVACGPGHGISIGSLGKDLNE 253 (391)
Q Consensus 175 ~~~nv~i~n~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~~~~nv~i~n~~~~~~~gi~igs~g~~~~~ 253 (391)
..+++..+|++|.+.........+-+. .+....+.+|.|....|-+...+ ..-.++||+|.+.-.+=+|..
T Consensus 321 ~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~a------ 392 (548)
T PLN02301 321 VGDGFIAQDIWFQNTAGPEKHQAVALRVSADQAVINRCRIDAYQDTLYAHS--LRQFYRDSYITGTVDFIFGNA------ 392 (548)
T ss_pred ECCceEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeeeeccccceecC--CcEEEEeeEEEeccceecccc------
Confidence 457888999999885432222334333 25889999999999888877765 335899999987766666552
Q ss_pred CcEEEEEEEeeEEeCCce----EEEEEEecCCCCeeEEEEEEEEEEEecCC
Q 041993 254 AGVQNVTVKTVTFTGTQN----GLRIKSWGRPSNGFARNILFRNAIMKNVQ 300 (391)
Q Consensus 254 ~~i~nI~i~n~~~~~~~~----gi~i~~~~~~~~g~i~nI~~~ni~~~~~~ 300 (391)
...|+||.+.-... .-.|..........-..+.|.|+++....
T Consensus 393 ----~avfq~c~i~~~~~~~~~~~~iTAqgr~~~~~~tG~vf~~c~i~~~~ 439 (548)
T PLN02301 393 ----AVVFQNCKIVARKPMAGQKNMVTAQGRTDPNQNTGISIQKCDIIASS 439 (548)
T ss_pred ----eeEEeccEEEEecCCCCCCceEEecCCCCCCCCCEEEEEeeEEecCc
Confidence 36688888864321 11233222112233457999999998653
No 95
>PLN02201 probable pectinesterase/pectinesterase inhibitor
Probab=85.17 E-value=24 Score=36.26 Aligned_cols=115 Identities=5% Similarity=0.032 Sum_probs=72.7
Q ss_pred eceeeEEEEeEEEEcCCCCCCCCceeee-ccccEEEEeeEEecCCceEEeCCCceeEEEEeeEEcCCceEEEeecCCCCC
Q 041993 174 NGCNNVKLKGVKVLASGNSPNTDGIHVQ-LSSDVTILNTRISTGDDCVSIGPGTSNLWIENVACGPGHGISIGSLGKDLN 252 (391)
Q Consensus 174 ~~~~nv~i~n~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~~~~nv~i~n~~~~~~~gi~igs~g~~~~ 252 (391)
...+++..+|++|.+.........+-+. .+....+.+|.|....|-+.... ..-.+++|+|.+.-.+=+|..
T Consensus 290 v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~a----- 362 (520)
T PLN02201 290 VSGRGFIARDITFQNTAGPEKHQAVALRSDSDLSVFYRCAMRGYQDTLYTHT--MRQFYRECRITGTVDFIFGDA----- 362 (520)
T ss_pred EECCCeEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeeeeccCCeeEeCC--CCEEEEeeEEeecccEEecCc-----
Confidence 3457888888888886432223334433 25788999999999888777665 235778999987767666552
Q ss_pred CCcEEEEEEEeeEEeCCc----eEEEEEEecCCCCeeEEEEEEEEEEEecCC
Q 041993 253 EAGVQNVTVKTVTFTGTQ----NGLRIKSWGRPSNGFARNILFRNAIMKNVQ 300 (391)
Q Consensus 253 ~~~i~nI~i~n~~~~~~~----~gi~i~~~~~~~~g~i~nI~~~ni~~~~~~ 300 (391)
...|+||.+.-.. ..-.|..........-..+.|.|+++....
T Consensus 363 -----~avf~~C~i~~~~~~~~~~~~iTAq~r~~~~~~~Gfvf~~C~it~~~ 409 (520)
T PLN02201 363 -----TAVFQNCQILAKKGLPNQKNTITAQGRKDPNQPTGFSIQFSNISADT 409 (520)
T ss_pred -----eEEEEccEEEEecCCCCCCceEEecCCCCCCCCcEEEEEeeEEecCc
Confidence 3678888886521 111233322212233456899999997643
No 96
>PLN02488 probable pectinesterase/pectinesterase inhibitor
Probab=85.16 E-value=25 Score=35.87 Aligned_cols=114 Identities=8% Similarity=0.015 Sum_probs=75.3
Q ss_pred ceeeEEEEeEEEEcCCCCCCCCceeee-ccccEEEEeeEEecCCceEEeCCCceeEEEEeeEEcCCceEEEeecCCCCCC
Q 041993 175 GCNNVKLKGVKVLASGNSPNTDGIHVQ-LSSDVTILNTRISTGDDCVSIGPGTSNLWIENVACGPGHGISIGSLGKDLNE 253 (391)
Q Consensus 175 ~~~nv~i~n~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~~~~nv~i~n~~~~~~~gi~igs~g~~~~~ 253 (391)
..+++..+|++|.+.........+-+. .+....+.+|.|....|-+...+ ..-.+++|+|.+.-.+=+|..
T Consensus 282 ~g~gF~A~nitf~Ntag~~~~QAVALrv~~Dra~Fy~C~f~GyQDTLy~~~--~RqyyrdC~I~GtVDFIFG~a------ 353 (509)
T PLN02488 282 NGDGFIGIDMCFRNTAGPAKGPAVALRVSGDMSVIYRCRIEGYQDALYPHR--DRQFYRECFITGTVDFICGNA------ 353 (509)
T ss_pred EcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeeccCcceeeCC--CCEEEEeeEEeeccceEecce------
Confidence 457788888888885432223344443 25889999999999888777655 456899999987767666553
Q ss_pred CcEEEEEEEeeEEeCCce----EEEEEEecCCCCeeEEEEEEEEEEEecCC
Q 041993 254 AGVQNVTVKTVTFTGTQN----GLRIKSWGRPSNGFARNILFRNAIMKNVQ 300 (391)
Q Consensus 254 ~~i~nI~i~n~~~~~~~~----gi~i~~~~~~~~g~i~nI~~~ni~~~~~~ 300 (391)
...|+||.+.-... .-.|..........-..+.|.|+++....
T Consensus 354 ----~avFq~C~I~sr~~~~~~~~~ITAq~R~~~~~~tGfvf~~C~it~~~ 400 (509)
T PLN02488 354 ----AAVFQFCQIVARQPMMGQSNVITAQSRESKDDNSGFSIQKCNITASS 400 (509)
T ss_pred ----EEEEEccEEEEecCCCCCCEEEEeCCCCCCCCCcEEEEEeeEEecCC
Confidence 47788888875321 12343332212233456999999998754
No 97
>PLN02416 probable pectinesterase/pectinesterase inhibitor
Probab=84.93 E-value=16 Score=37.84 Aligned_cols=113 Identities=9% Similarity=0.103 Sum_probs=72.2
Q ss_pred ceeeEEEEeEEEEcCCCCCCCCceeee-ccccEEEEeeEEecCCceEEeCCCceeEEEEeeEEcCCceEEEeecCCCCCC
Q 041993 175 GCNNVKLKGVKVLASGNSPNTDGIHVQ-LSSDVTILNTRISTGDDCVSIGPGTSNLWIENVACGPGHGISIGSLGKDLNE 253 (391)
Q Consensus 175 ~~~nv~i~n~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~~~~nv~i~n~~~~~~~gi~igs~g~~~~~ 253 (391)
..+++..+|++|.+.........+-+. .+..+.+.+|.|....|-+...+ ..-.+++|+|.+.-.+=+|..
T Consensus 315 ~~~~F~a~nitf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~a------ 386 (541)
T PLN02416 315 SGEGFLARDITIENTAGPEKHQAVALRVNADLVALYRCTINGYQDTLYVHS--FRQFYRECDIYGTIDYIFGNA------ 386 (541)
T ss_pred ECCCeEEEeeEEEECCCCCCCceEEEEEcCccEEEEcceEecccchhccCC--CceEEEeeEEeeccceeeccc------
Confidence 467899999999886432223333333 25889999999999888776654 345899999987766666552
Q ss_pred CcEEEEEEEeeEEeCCce--E--EEEEEecCCCCeeEEEEEEEEEEEecC
Q 041993 254 AGVQNVTVKTVTFTGTQN--G--LRIKSWGRPSNGFARNILFRNAIMKNV 299 (391)
Q Consensus 254 ~~i~nI~i~n~~~~~~~~--g--i~i~~~~~~~~g~i~nI~~~ni~~~~~ 299 (391)
...|+||.+.-... | -.|..........-..+.|.|+++...
T Consensus 387 ----~avfq~c~i~~~~~~~~~~~~iTA~~r~~~~~~~G~vf~~c~i~~~ 432 (541)
T PLN02416 387 ----AVVFQACNIVSKMPMPGQFTVITAQSRDTPDEDTGISIQNCSILAT 432 (541)
T ss_pred ----eEEEeccEEEEecCCCCCceEEECCCCCCCCCCCEEEEEeeEEecC
Confidence 36688888864311 1 123222111122345789999999754
No 98
>PLN02995 Probable pectinesterase/pectinesterase inhibitor
Probab=84.72 E-value=15 Score=38.11 Aligned_cols=114 Identities=10% Similarity=0.060 Sum_probs=67.5
Q ss_pred ceeeEEEEeEEEEcCCCCCCCCceeee-ccccEEEEeeEEecCCceEEeCCCceeEEEEeeEEcCCceEEEeecCCCCCC
Q 041993 175 GCNNVKLKGVKVLASGNSPNTDGIHVQ-LSSDVTILNTRISTGDDCVSIGPGTSNLWIENVACGPGHGISIGSLGKDLNE 253 (391)
Q Consensus 175 ~~~nv~i~n~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~~~~nv~i~n~~~~~~~gi~igs~g~~~~~ 253 (391)
..++++.+|++|.+.........+-+. .+....+.+|.|....|-+...+ ..-.+++|+|.+.-.+=+|..
T Consensus 310 ~~~~F~a~nitf~Ntag~~~~QAVAlrv~~Dr~~f~~c~~~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~a------ 381 (539)
T PLN02995 310 EGLHFIAKGITFRNTAGPAKGQAVALRSSSDLSIFYKCSIEGYQDTLMVHS--QRQFYRECYIYGTVDFIFGNA------ 381 (539)
T ss_pred ECCCeEEEeeEEEeCCCCCCCceEEEEEcCCceeEEcceEecccchhccCC--CceEEEeeEEeeccceEeccc------
Confidence 356777788888775422222333333 24778888888888777666554 234788888877666666542
Q ss_pred CcEEEEEEEeeEEeCCce----EEEEEEecCCCCeeEEEEEEEEEEEecCC
Q 041993 254 AGVQNVTVKTVTFTGTQN----GLRIKSWGRPSNGFARNILFRNAIMKNVQ 300 (391)
Q Consensus 254 ~~i~nI~i~n~~~~~~~~----gi~i~~~~~~~~g~i~nI~~~ni~~~~~~ 300 (391)
...|+||.+.-... .-.|..........-..+.|.|+++....
T Consensus 382 ----~avf~~C~i~~~~~~~~~~~~iTA~~r~~~~~~~G~vf~~c~i~~~~ 428 (539)
T PLN02995 382 ----AAVFQNCIILPRRPLKGQANVITAQGRADPFQNTGISIHNSRILPAP 428 (539)
T ss_pred ----ceEEeccEEEEecCCCCCcceEecCCCCCCCCCceEEEEeeEEecCC
Confidence 35677777764321 11233221111223467899999998753
No 99
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional
Probab=84.63 E-value=24 Score=36.58 Aligned_cols=115 Identities=7% Similarity=0.050 Sum_probs=74.3
Q ss_pred eceeeEEEEeEEEEcCCCCCCCCceeee-ccccEEEEeeEEecCCceEEeCCCceeEEEEeeEEcCCceEEEeecCCCCC
Q 041993 174 NGCNNVKLKGVKVLASGNSPNTDGIHVQ-LSSDVTILNTRISTGDDCVSIGPGTSNLWIENVACGPGHGISIGSLGKDLN 252 (391)
Q Consensus 174 ~~~~nv~i~n~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~~~~nv~i~n~~~~~~~gi~igs~g~~~~ 252 (391)
...+++..+|++|.+.........+-+. .+....+.+|.|....|-+...+ ..-.++||+|.+.-.+=+|..
T Consensus 310 v~~~~F~a~~it~~Ntag~~~~QAvAlrv~~D~~~f~~C~~~gyQDTLy~~~--~rq~y~~c~I~GtVDFIFG~a----- 382 (538)
T PLN03043 310 VSGERFVAVDVTFRNTAGPEKHQAVALRNNADLSTFYRCSFEGYQDTLYVHS--LRQFYRECDIYGTVDFIFGNA----- 382 (538)
T ss_pred EECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEeccCcccccCC--CcEEEEeeEEeeccceEeecc-----
Confidence 3457899999999886432233344443 25779999999999888777665 346889999987767766553
Q ss_pred CCcEEEEEEEeeEEeCCc----eEEEEEEecCCCCeeEEEEEEEEEEEecCC
Q 041993 253 EAGVQNVTVKTVTFTGTQ----NGLRIKSWGRPSNGFARNILFRNAIMKNVQ 300 (391)
Q Consensus 253 ~~~i~nI~i~n~~~~~~~----~gi~i~~~~~~~~g~i~nI~~~ni~~~~~~ 300 (391)
...|+||.+.-.. ..-.|..........-..+.|.|+++....
T Consensus 383 -----~avfq~c~i~~r~~~~~~~~~iTA~~r~~~~~~tG~~~~~c~i~~~~ 429 (538)
T PLN03043 383 -----AAIFQNCNLYARKPMANQKNAFTAQGRTDPNQNTGISIINCTIEAAP 429 (538)
T ss_pred -----eeeeeccEEEEecCCCCCCceEEecCCCCCCCCceEEEEecEEecCC
Confidence 3668888886521 111233222112223356999999998653
No 100
>PLN02990 Probable pectinesterase/pectinesterase inhibitor
Probab=84.63 E-value=27 Score=36.42 Aligned_cols=114 Identities=9% Similarity=0.164 Sum_probs=73.8
Q ss_pred ceeeEEEEeEEEEcCCCCCCCCceeee-ccccEEEEeeEEecCCceEEeCCCceeEEEEeeEEcCCceEEEeecCCCCCC
Q 041993 175 GCNNVKLKGVKVLASGNSPNTDGIHVQ-LSSDVTILNTRISTGDDCVSIGPGTSNLWIENVACGPGHGISIGSLGKDLNE 253 (391)
Q Consensus 175 ~~~nv~i~n~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~~~~nv~i~n~~~~~~~gi~igs~g~~~~~ 253 (391)
..+++..+|++|.+.........+-+. .+....+.+|.|....|-+...+ ..-.+++|+|.+.-.+=+|..
T Consensus 345 ~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~a------ 416 (572)
T PLN02990 345 NGDHFTAKNIGFENTAGPEGHQAVALRVSADYAVFYNCQIDGYQDTLYVHS--HRQFFRDCTVSGTVDFIFGDA------ 416 (572)
T ss_pred EcCCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEecccchhccCC--CcEEEEeeEEecccceEccCc------
Confidence 457888999999886432223334443 35889999999999888777665 345789999987767766552
Q ss_pred CcEEEEEEEeeEEeCCc----eEEEEEEecCCCCeeEEEEEEEEEEEecCC
Q 041993 254 AGVQNVTVKTVTFTGTQ----NGLRIKSWGRPSNGFARNILFRNAIMKNVQ 300 (391)
Q Consensus 254 ~~i~nI~i~n~~~~~~~----~gi~i~~~~~~~~g~i~nI~~~ni~~~~~~ 300 (391)
...|+||.+.-.. ..-.|..........-..+.|.|+++....
T Consensus 417 ----~avf~~C~i~~~~~~~~~~~~iTAq~r~~~~~~~G~vf~~C~it~~~ 463 (572)
T PLN02990 417 ----KVVLQNCNIVVRKPMKGQSCMITAQGRSDVRESTGLVLQNCHITGEP 463 (572)
T ss_pred ----eEEEEccEEEEecCCCCCceEEEeCCCCCCCCCceEEEEeeEEecCc
Confidence 3678888886421 112333322111223456999999998754
No 101
>PLN02432 putative pectinesterase
Probab=84.02 E-value=22 Score=33.79 Aligned_cols=111 Identities=10% Similarity=0.091 Sum_probs=72.9
Q ss_pred ceeeEEEEeEEEEcCCCCCCCCceeee-ccccEEEEeeEEecCCceEEeCCCceeEEEEeeEEcCCceEEEeecCCCCCC
Q 041993 175 GCNNVKLKGVKVLASGNSPNTDGIHVQ-LSSDVTILNTRISTGDDCVSIGPGTSNLWIENVACGPGHGISIGSLGKDLNE 253 (391)
Q Consensus 175 ~~~nv~i~n~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~~~~nv~i~n~~~~~~~gi~igs~g~~~~~ 253 (391)
..+++..+|++|.+... .....+-+. ....+.+.+|.|....|-+.... ..-.++||.|.+.-.+=+|..
T Consensus 92 ~a~~f~a~nlt~~Nt~g-~~~QAvAl~v~gDr~~f~~c~~~G~QDTLy~~~--gr~yf~~c~I~G~VDFIFG~g------ 162 (293)
T PLN02432 92 LASDFVGRFLTIQNTFG-SSGKAVALRVAGDRAAFYGCRILSYQDTLLDDT--GRHYYRNCYIEGATDFICGNA------ 162 (293)
T ss_pred ECCCeEEEeeEEEeCCC-CCCceEEEEEcCCcEEEEcceEecccceeEECC--CCEEEEeCEEEecccEEecCc------
Confidence 45789999999998532 122333333 25889999999999888776654 457899999987767766552
Q ss_pred CcEEEEEEEeeEEeCCc--eEEEEEEecCCCCeeEEEEEEEEEEEecC
Q 041993 254 AGVQNVTVKTVTFTGTQ--NGLRIKSWGRPSNGFARNILFRNAIMKNV 299 (391)
Q Consensus 254 ~~i~nI~i~n~~~~~~~--~gi~i~~~~~~~~g~i~nI~~~ni~~~~~ 299 (391)
...|++|.+.... .| .|..........-....|.|+++...
T Consensus 163 ----~a~Fe~c~i~s~~~~~g-~itA~~r~~~~~~~Gfvf~~c~itg~ 205 (293)
T PLN02432 163 ----ASLFEKCHLHSLSPNNG-AITAQQRTSASENTGFTFLGCKLTGA 205 (293)
T ss_pred ----eEEEEeeEEEEecCCCC-eEEecCCCCCCCCceEEEEeeEEccc
Confidence 3668888886421 23 33322211112234689999999853
No 102
>PLN02314 pectinesterase
Probab=83.93 E-value=20 Score=37.61 Aligned_cols=114 Identities=8% Similarity=0.093 Sum_probs=74.0
Q ss_pred eceeeEEEEeEEEEcCCCCCCCCceeee-ccccEEEEeeEEecCCceEEeCCCceeEEEEeeEEcCCceEEEeecCCCCC
Q 041993 174 NGCNNVKLKGVKVLASGNSPNTDGIHVQ-LSSDVTILNTRISTGDDCVSIGPGTSNLWIENVACGPGHGISIGSLGKDLN 252 (391)
Q Consensus 174 ~~~~nv~i~n~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~~~~nv~i~n~~~~~~~gi~igs~g~~~~ 252 (391)
...+++..+|++|.+.........+-+. .+....+.+|.|....|-+...+ ..-.+++|+|.+.-.+=+|..
T Consensus 362 v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~f~~c~~~G~QDTLy~~~--~rq~y~~C~I~GtvDFIFG~a----- 434 (586)
T PLN02314 362 AAGKGFIAKDMGFINTAGAAKHQAVAFRSGSDMSVFYQCSFDAFQDTLYAHS--NRQFYRDCDITGTIDFIFGNA----- 434 (586)
T ss_pred EEcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeEEEeccchheeCC--CCEEEEeeEEEeccceeccCc-----
Confidence 3567889999999886432222333333 25788999999999888777665 335889999987766666542
Q ss_pred CCcEEEEEEEeeEEeCCc-----eEEEEEEecCCCCeeEEEEEEEEEEEecCC
Q 041993 253 EAGVQNVTVKTVTFTGTQ-----NGLRIKSWGRPSNGFARNILFRNAIMKNVQ 300 (391)
Q Consensus 253 ~~~i~nI~i~n~~~~~~~-----~gi~i~~~~~~~~g~i~nI~~~ni~~~~~~ 300 (391)
...|+||.+.-.. .+ .|..........-..+.|.|+++....
T Consensus 435 -----~avf~~c~i~~~~~~~~~~~-~iTA~~r~~~~~~~G~vf~~c~i~~~~ 481 (586)
T PLN02314 435 -----AVVFQNCNIQPRQPLPNQFN-TITAQGKKDPNQNTGISIQRCTISAFG 481 (586)
T ss_pred -----eeeeeccEEEEecCCCCCCc-eEecCCCCCCCCCCEEEEEeeEEecCC
Confidence 3668888886421 12 233222112234457899999998754
No 103
>PLN02304 probable pectinesterase
Probab=83.77 E-value=43 Score=32.99 Aligned_cols=112 Identities=10% Similarity=0.148 Sum_probs=71.2
Q ss_pred ceeeEEEEeEEEEcCCCC-----CCCCceeee-ccccEEEEeeEEecCCceEEeCCCceeEEEEeeEEcCCceEEEeecC
Q 041993 175 GCNNVKLKGVKVLASGNS-----PNTDGIHVQ-LSSDVTILNTRISTGDDCVSIGPGTSNLWIENVACGPGHGISIGSLG 248 (391)
Q Consensus 175 ~~~nv~i~n~~i~~~~~~-----~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~~~~nv~i~n~~~~~~~gi~igs~g 248 (391)
..+++..+|++|.+.... .....+-+. ....+.+.+|.|....|-+.... ..-.++||+|.+.-.+=+|..
T Consensus 160 ~a~~F~a~nITf~Nta~~~~~g~~~~QAVAL~v~gDra~fy~C~f~G~QDTLy~~~--gR~Yf~~CyIeG~VDFIFG~g- 236 (379)
T PLN02304 160 FASNFIAKNISFMNVAPIPKPGDVGAQAVAIRIAGDQAAFWGCGFFGAQDTLHDDR--GRHYFKDCYIQGSIDFIFGDA- 236 (379)
T ss_pred ECCCeEEEeeEEEecCCCCCCCCCCccEEEEEecCCcEEEEeceEecccceeEeCC--CCEEEEeeEEcccccEEeccc-
Confidence 357888888888875321 112233332 25889999999999888776554 357799999988777767553
Q ss_pred CCCCCCcEEEEEEEeeEEeCCc----------eEEEEEEecCCCCeeEEEEEEEEEEEecC
Q 041993 249 KDLNEAGVQNVTVKTVTFTGTQ----------NGLRIKSWGRPSNGFARNILFRNAIMKNV 299 (391)
Q Consensus 249 ~~~~~~~i~nI~i~n~~~~~~~----------~gi~i~~~~~~~~g~i~nI~~~ni~~~~~ 299 (391)
...|++|.+.... .| .|..........-....|.|+++...
T Consensus 237 ---------~A~Fe~C~I~s~~~~~~~g~~~~~G-~ITA~~Rt~~~~~~GfvF~~C~itg~ 287 (379)
T PLN02304 237 ---------RSLYENCRLISMANPVPPGSKSING-AVTAHGRTSKDENTGFSFVNCTIGGT 287 (379)
T ss_pred ---------eEEEEccEEEEecCCcccccccCce-EEEecCCCCCCCCceEEEECCEEccC
Confidence 3568888887432 12 23322111122334678999999763
No 104
>PLN02745 Putative pectinesterase/pectinesterase inhibitor
Probab=83.60 E-value=40 Score=35.41 Aligned_cols=114 Identities=10% Similarity=0.082 Sum_probs=74.5
Q ss_pred ceeeEEEEeEEEEcCCCCCCCCceeee-ccccEEEEeeEEecCCceEEeCCCceeEEEEeeEEcCCceEEEeecCCCCCC
Q 041993 175 GCNNVKLKGVKVLASGNSPNTDGIHVQ-LSSDVTILNTRISTGDDCVSIGPGTSNLWIENVACGPGHGISIGSLGKDLNE 253 (391)
Q Consensus 175 ~~~nv~i~n~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~~~~nv~i~n~~~~~~~gi~igs~g~~~~~ 253 (391)
..+++..+|++|.+.........+-+. .+....+.+|.|....|-+.... ..-.+++|+|.+.-.+=+|..
T Consensus 370 ~~~~F~a~nitf~Ntag~~~~QAVAl~v~~Dr~~f~~c~~~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~a------ 441 (596)
T PLN02745 370 LGEGFMAKSMGFRNTAGPEKHQAVAIRVQSDRSIFLNCRFEGYQDTLYAQT--HRQFYRSCVITGTIDFIFGDA------ 441 (596)
T ss_pred EcCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEeecccccccCC--CcEEEEeeEEEeeccEEecce------
Confidence 567899999999885432222333333 35889999999999888776654 457899999987766666552
Q ss_pred CcEEEEEEEeeEEeCCc----eEEEEEEecCCCCeeEEEEEEEEEEEecCC
Q 041993 254 AGVQNVTVKTVTFTGTQ----NGLRIKSWGRPSNGFARNILFRNAIMKNVQ 300 (391)
Q Consensus 254 ~~i~nI~i~n~~~~~~~----~gi~i~~~~~~~~g~i~nI~~~ni~~~~~~ 300 (391)
...|+||.+.-.. ..-.|..........-..+.|.|+++....
T Consensus 442 ----~avf~~C~i~~~~~~~~~~~~iTAq~r~~~~~~~Gfvf~~c~i~~~~ 488 (596)
T PLN02745 442 ----AAIFQNCLIFVRKPLPNQQNTVTAQGRVDKFETTGIVLQNCRIAPDE 488 (596)
T ss_pred ----eEEEEecEEEEecCCCCCCceEEecCCCCCCCCceEEEEeeEEecCc
Confidence 4678888886431 111333322112233467999999998753
No 105
>PLN02671 pectinesterase
Probab=83.09 E-value=48 Score=32.41 Aligned_cols=112 Identities=10% Similarity=0.119 Sum_probs=69.4
Q ss_pred ceeeEEEEeEEEEcCCC----CCCCCceeee-ccccEEEEeeEEecCCceEEeCCCceeEEEEeeEEcCCceEEEeecCC
Q 041993 175 GCNNVKLKGVKVLASGN----SPNTDGIHVQ-LSSDVTILNTRISTGDDCVSIGPGTSNLWIENVACGPGHGISIGSLGK 249 (391)
Q Consensus 175 ~~~nv~i~n~~i~~~~~----~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~~~~nv~i~n~~~~~~~gi~igs~g~ 249 (391)
..++++.+|++|.+... ......+-+. ...++.+.||.|....|-+.... ..-.++||+|.+.-.+=+|..
T Consensus 152 ~a~~F~a~nitfeNt~~~~~g~~~~QAVALrv~gDra~f~~c~f~G~QDTLy~~~--gR~yf~~CyIeG~VDFIFG~g-- 227 (359)
T PLN02671 152 ESDYFCATGITFENTVVAEPGGQGMQAVALRISGDKAFFYKVRVLGAQDTLLDET--GSHYFYQCYIQGSVDFIFGNA-- 227 (359)
T ss_pred ECCceEEEeeEEEcCCCCCCCCCCccEEEEEEcCccEEEEcceEeccccccEeCC--CcEEEEecEEEEeccEEecce--
Confidence 34677777777777521 1112223332 25889999999999888776554 357899999987766666542
Q ss_pred CCCCCcEEEEEEEeeEEeCCc--eEEEEEEecCCCCeeEEEEEEEEEEEecC
Q 041993 250 DLNEAGVQNVTVKTVTFTGTQ--NGLRIKSWGRPSNGFARNILFRNAIMKNV 299 (391)
Q Consensus 250 ~~~~~~i~nI~i~n~~~~~~~--~gi~i~~~~~~~~g~i~nI~~~ni~~~~~ 299 (391)
...|++|.+.... .| .|..........-....|.|+++...
T Consensus 228 --------~A~Fe~C~I~s~~~~~G-~ITA~~r~~~~~~~GfvF~~C~itg~ 270 (359)
T PLN02671 228 --------KSLYQDCVIQSTAKRSG-AIAAHHRDSPTEDTGFSFVNCVINGT 270 (359)
T ss_pred --------eEEEeccEEEEecCCCe-EEEeeccCCCCCCccEEEEccEEccC
Confidence 3668888886532 23 33322111112235689999999763
No 106
>PLN02484 probable pectinesterase/pectinesterase inhibitor
Probab=83.02 E-value=32 Score=35.99 Aligned_cols=115 Identities=6% Similarity=0.059 Sum_probs=73.6
Q ss_pred eceeeEEEEeEEEEcCCCCCCCCceeee-ccccEEEEeeEEecCCceEEeCCCceeEEEEeeEEcCCceEEEeecCCCCC
Q 041993 174 NGCNNVKLKGVKVLASGNSPNTDGIHVQ-LSSDVTILNTRISTGDDCVSIGPGTSNLWIENVACGPGHGISIGSLGKDLN 252 (391)
Q Consensus 174 ~~~~nv~i~n~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~~~~nv~i~n~~~~~~~gi~igs~g~~~~ 252 (391)
...+++..+|++|.+.........+-+. ......+.+|.|....|-+...+ ..-.+++|+|.+.-.+=+|..
T Consensus 357 v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~a----- 429 (587)
T PLN02484 357 ATGAGFIARDMTFENWAGPAKHQAVALRVGADHAVVYRCNIIGYQDTLYVHS--NRQFFRECDIYGTVDFIFGNA----- 429 (587)
T ss_pred EEcCCEEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeEeccCcccccCC--CcEEEEecEEEeccceecccc-----
Confidence 3457888888888885432222334333 25889999999999888776655 346889999987766666552
Q ss_pred CCcEEEEEEEeeEEeCCc----eEEEEEEecCCCCeeEEEEEEEEEEEecCC
Q 041993 253 EAGVQNVTVKTVTFTGTQ----NGLRIKSWGRPSNGFARNILFRNAIMKNVQ 300 (391)
Q Consensus 253 ~~~i~nI~i~n~~~~~~~----~gi~i~~~~~~~~g~i~nI~~~ni~~~~~~ 300 (391)
...|+||.+.-.. ..-.|..........-..+.|.|+++....
T Consensus 430 -----~avfq~C~i~~~~~~~~~~~~ITAq~r~~~~~~~G~vf~~c~i~~~~ 476 (587)
T PLN02484 430 -----AVVLQNCSIYARKPMAQQKNTITAQNRKDPNQNTGISIHACRILAAS 476 (587)
T ss_pred -----eeEEeccEEEEecCCCCCceEEEecCCCCCCCCcEEEEEeeEEecCC
Confidence 3668888886421 112333322112233467999999998643
No 107
>PLN02197 pectinesterase
Probab=82.39 E-value=28 Score=36.47 Aligned_cols=114 Identities=10% Similarity=0.146 Sum_probs=72.6
Q ss_pred ceeeEEEEeEEEEcCCCCCCCCceeee-ccccEEEEeeEEecCCceEEeCCCceeEEEEeeEEcCCceEEEeecCCCCCC
Q 041993 175 GCNNVKLKGVKVLASGNSPNTDGIHVQ-LSSDVTILNTRISTGDDCVSIGPGTSNLWIENVACGPGHGISIGSLGKDLNE 253 (391)
Q Consensus 175 ~~~nv~i~n~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~~~~nv~i~n~~~~~~~gi~igs~g~~~~~ 253 (391)
..+++..+|++|.+.........+-+. .+....+.+|.|....|-+...+ ..-.+++|+|.+.-.+=+|..
T Consensus 362 ~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~GyQDTLy~~~--~Rqyy~~C~I~GtVDFIFG~a------ 433 (588)
T PLN02197 362 ESEGFMAKWIGFKNTAGPMGHQAVAIRVNGDRAVIFNCRFDGYQDTLYVNN--GRQFYRNIVVSGTVDFIFGKS------ 433 (588)
T ss_pred ECCcEEEEEeEEEeCCCCCCCceEEEEecCCcEEEEEeEEEecCcceEecC--CCEEEEeeEEEecccccccce------
Confidence 467888889988885432223344443 25889999999999888777665 345889999977666656543
Q ss_pred CcEEEEEEEeeEEeCCc--eE--EEEEEecCCC-CeeEEEEEEEEEEEecCC
Q 041993 254 AGVQNVTVKTVTFTGTQ--NG--LRIKSWGRPS-NGFARNILFRNAIMKNVQ 300 (391)
Q Consensus 254 ~~i~nI~i~n~~~~~~~--~g--i~i~~~~~~~-~g~i~nI~~~ni~~~~~~ 300 (391)
-..|+||.+.-.. .+ -.|....... ...-..+.|.|+++....
T Consensus 434 ----~avfq~C~i~~r~~~~~~~~~iTAqgr~~~~~~~tG~vf~~C~it~~~ 481 (588)
T PLN02197 434 ----ATVIQNSLIVVRKGSKGQYNTVTADGNEKGLAMKIGIVLQNCRIVPDK 481 (588)
T ss_pred ----eeeeecCEEEEecCCCCCceeEECCCCCCCCCCCcEEEEEccEEecCC
Confidence 2678888876321 11 1232221101 133457999999998753
No 108
>PLN02698 Probable pectinesterase/pectinesterase inhibitor
Probab=82.07 E-value=49 Score=33.96 Aligned_cols=114 Identities=8% Similarity=0.071 Sum_probs=74.5
Q ss_pred ceeeEEEEeEEEEcCCCCCCCCceeee-ccccEEEEeeEEecCCceEEeCCCceeEEEEeeEEcCCceEEEeecCCCCCC
Q 041993 175 GCNNVKLKGVKVLASGNSPNTDGIHVQ-LSSDVTILNTRISTGDDCVSIGPGTSNLWIENVACGPGHGISIGSLGKDLNE 253 (391)
Q Consensus 175 ~~~nv~i~n~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~~~~nv~i~n~~~~~~~gi~igs~g~~~~~ 253 (391)
..+++..+|++|.+.........+-+. .+.++.+.+|.|....|-+.... ..-.+++|+|.+.-.+=+|..
T Consensus 268 ~~~~F~a~nitf~Ntag~~~~QAvAl~v~~D~~~fy~c~~~G~QDTLy~~~--~rqyy~~C~I~G~vDFIFG~a------ 339 (497)
T PLN02698 268 TGDGFIARDIGFKNAAGPKGEQAIALSITSDHSVLYRCSIAGYQDTLYAAA--LRQFYRECDIYGTIDFIFGNA------ 339 (497)
T ss_pred ECCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeecccchheeCC--CcEEEEeeEEEeccceEeccc------
Confidence 457899999999886432222333333 25889999999999888877765 335899999987767767653
Q ss_pred CcEEEEEEEeeEEeCCce--E--EEEEEecCCCCeeEEEEEEEEEEEecCC
Q 041993 254 AGVQNVTVKTVTFTGTQN--G--LRIKSWGRPSNGFARNILFRNAIMKNVQ 300 (391)
Q Consensus 254 ~~i~nI~i~n~~~~~~~~--g--i~i~~~~~~~~g~i~nI~~~ni~~~~~~ 300 (391)
...|+||.+.-... + -.|..........-..+.|.|+++....
T Consensus 340 ----~avf~~C~i~~~~~~~~~~~~iTAq~r~~~~~~~G~vf~~c~i~~~~ 386 (497)
T PLN02698 340 ----AAVFQNCYLFLRRPHGKSYNVILANGRSDPGQNTGFSLQSCRIRTSS 386 (497)
T ss_pred ----ceeecccEEEEecCCCCCceEEEecCCCCCCCCceEEEEeeEEecCC
Confidence 35688888864221 1 1233222112233457999999998754
No 109
>PLN02176 putative pectinesterase
Probab=81.97 E-value=24 Score=34.18 Aligned_cols=112 Identities=18% Similarity=0.280 Sum_probs=72.2
Q ss_pred ceeeEEEEeEEEEcCCCC------CCCCceeee-ccccEEEEeeEEecCCceEEeCCCceeEEEEeeEEcCCceEEEeec
Q 041993 175 GCNNVKLKGVKVLASGNS------PNTDGIHVQ-LSSDVTILNTRISTGDDCVSIGPGTSNLWIENVACGPGHGISIGSL 247 (391)
Q Consensus 175 ~~~nv~i~n~~i~~~~~~------~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~~~~nv~i~n~~~~~~~gi~igs~ 247 (391)
.+++++.+|++|.+.... .....+-+. ......+.+|.|....|-+.... ..-.+++|+|.+.-.+=+|..
T Consensus 120 ~a~~F~a~nlT~~Nt~~~~~~~~~~~~QAVAl~v~gDr~~f~~C~f~G~QDTLy~~~--gRqyf~~CyIeG~VDFIFG~a 197 (340)
T PLN02176 120 YASNIIITGITFKNTYNIASNSSRPTKPAVAARMLGDKYAIIDSSFDGFQDTLFDGK--GRHYYKRCVISGGIDFIFGYA 197 (340)
T ss_pred ECCCEEEEeeEEEeCCCccCCCCCCccceEEEEecCccEEEEccEEecccceeEeCC--cCEEEEecEEEecccEEecCc
Confidence 468899999999885321 112233332 25889999999999888776554 468899999987766666552
Q ss_pred CCCCCCCcEEEEEEEeeEEeCCc--------eEEEEEEecCCCCeeEEEEEEEEEEEecC
Q 041993 248 GKDLNEAGVQNVTVKTVTFTGTQ--------NGLRIKSWGRPSNGFARNILFRNAIMKNV 299 (391)
Q Consensus 248 g~~~~~~~i~nI~i~n~~~~~~~--------~gi~i~~~~~~~~g~i~nI~~~ni~~~~~ 299 (391)
...|+||++.-.. .| .|-.........-....|.|+++...
T Consensus 198 ----------~a~Fe~C~I~s~~~~~~~~~~~g-~ITA~~r~~~~~~~GfvF~~C~itg~ 246 (340)
T PLN02176 198 ----------QSIFEGCTLKLTLGIYPPNEPYG-TITAQGRPSPSDKGGFVFKDCTVTGV 246 (340)
T ss_pred ----------eEEEeccEEEEecccCCCCCCcE-EEEeCCCCCCCCCcEEEEECCEEccC
Confidence 3678888887421 12 23222111112334688999999864
No 110
>PLN02497 probable pectinesterase
Probab=81.55 E-value=19 Score=34.73 Aligned_cols=114 Identities=12% Similarity=0.100 Sum_probs=72.2
Q ss_pred eceeeEEEEeEEEEcCCCCC-------CCCceeee-ccccEEEEeeEEecCCceEEeCCCceeEEEEeeEEcCCceEEEe
Q 041993 174 NGCNNVKLKGVKVLASGNSP-------NTDGIHVQ-LSSDVTILNTRISTGDDCVSIGPGTSNLWIENVACGPGHGISIG 245 (391)
Q Consensus 174 ~~~~nv~i~n~~i~~~~~~~-------~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~~~~nv~i~n~~~~~~~gi~ig 245 (391)
...+++..+|++|.+..... ....+-+. ...+..+.||.|....|-+.... ..-.++||++.+.-.+=+|
T Consensus 112 v~a~~f~a~nlT~~Nt~~~~~~~~~~~~~QAVAl~v~gDr~~fy~C~f~G~QDTLy~~~--gRqyf~~C~IeG~VDFIFG 189 (331)
T PLN02497 112 TLADNTVVKSITFANSYNFPSKGNKNPRVPAVAAMIGGDKSAFYSCGFAGVQDTLWDSD--GRHYFKRCTIQGAVDFIFG 189 (331)
T ss_pred EecCCeEEEccEEEeCCCCccccCCCCCcceEEEEecCCcEEEEeeEEeccccceeeCC--CcEEEEeCEEEecccEEcc
Confidence 35678999999999864211 11222322 25889999999999888776544 4578999999877676665
Q ss_pred ecCCCCCCCcEEEEEEEeeEEeCCce------EEEEEEecCCCCeeEEEEEEEEEEEecC
Q 041993 246 SLGKDLNEAGVQNVTVKTVTFTGTQN------GLRIKSWGRPSNGFARNILFRNAIMKNV 299 (391)
Q Consensus 246 s~g~~~~~~~i~nI~i~n~~~~~~~~------gi~i~~~~~~~~g~i~nI~~~ni~~~~~ 299 (391)
.. ...|+||.+..... .-.|..........-....|.|+++...
T Consensus 190 ~g----------~a~Fe~C~I~s~~~~~~~~~~g~ITA~~r~~~~~~~GfvF~~C~itg~ 239 (331)
T PLN02497 190 SG----------QSIYESCVIQVLGGQLEPGLAGFITAQGRTNPYDANGFVFKNCLVYGT 239 (331)
T ss_pred Cc----------eEEEEccEEEEecCcCCCCCceEEEecCCCCCCCCceEEEEccEEccC
Confidence 42 36788888864211 1233322111222344678999999864
No 111
>PLN02773 pectinesterase
Probab=80.17 E-value=51 Score=31.68 Aligned_cols=114 Identities=9% Similarity=0.132 Sum_probs=76.8
Q ss_pred eceeeEEEEeEEEEcCCCCCCCCceeee-ccccEEEEeeEEecCCceEEeCCCceeEEEEeeEEcCCceEEEeecCCCCC
Q 041993 174 NGCNNVKLKGVKVLASGNSPNTDGIHVQ-LSSDVTILNTRISTGDDCVSIGPGTSNLWIENVACGPGHGISIGSLGKDLN 252 (391)
Q Consensus 174 ~~~~nv~i~n~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~~~~nv~i~n~~~~~~~gi~igs~g~~~~ 252 (391)
..++++..+|++|.+..........-+. ....+.+.||.|....|-+.... ..-.++||.|.+.-.+=+|+.
T Consensus 99 v~a~~f~a~nlT~~Nt~~~~~gQAvAl~v~gDr~~f~~c~~~G~QDTL~~~~--gr~yf~~c~IeG~VDFIFG~g----- 171 (317)
T PLN02773 99 VEGEDFIAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHY--GKQYLRDCYIEGSVDFIFGNS----- 171 (317)
T ss_pred EECCCeEEEeeEEEeCCCCCCCcEEEEEecCccEEEEccEeecccceeEeCC--CCEEEEeeEEeecccEEeecc-----
Confidence 3567899999999986432122233332 25889999999999888877654 468899999988777767653
Q ss_pred CCcEEEEEEEeeEEeCCceEEEEEEecCCCCeeEEEEEEEEEEEecCC
Q 041993 253 EAGVQNVTVKTVTFTGTQNGLRIKSWGRPSNGFARNILFRNAIMKNVQ 300 (391)
Q Consensus 253 ~~~i~nI~i~n~~~~~~~~gi~i~~~~~~~~g~i~nI~~~ni~~~~~~ 300 (391)
...|++|++.....|. |..........-....|.|+++....
T Consensus 172 -----~a~Fe~c~i~s~~~g~-ITA~~r~~~~~~~GfvF~~c~it~~~ 213 (317)
T PLN02773 172 -----TALLEHCHIHCKSAGF-ITAQSRKSSQESTGYVFLRCVITGNG 213 (317)
T ss_pred -----EEEEEeeEEEEccCcE-EECCCCCCCCCCceEEEEccEEecCC
Confidence 3779999997655553 33221111112345899999998754
No 112
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=79.49 E-value=19 Score=31.53 Aligned_cols=63 Identities=21% Similarity=0.277 Sum_probs=34.9
Q ss_pred ccEEEEeeEEecC-CceE-EeCC-------CceeEEEEeeEEcCC-c--eE--EEeecCCCCCCCcEEEEEEEeeEEeCC
Q 041993 204 SDVTILNTRISTG-DDCV-SIGP-------GTSNLWIENVACGPG-H--GI--SIGSLGKDLNEAGVQNVTVKTVTFTGT 269 (391)
Q Consensus 204 ~nv~I~n~~i~~~-dD~i-~i~~-------~~~nv~i~n~~~~~~-~--gi--~igs~g~~~~~~~i~nI~i~n~~~~~~ 269 (391)
.+|.|-|+.|.+- .-+| .++. ..+||.|.++.|+.. . .+ .-|-. ..++.|..|||++|.+.
T Consensus 2 ~dIEIYnN~I~~T~g~GIWl~gy~~~ysk~~a~nVhIhhN~fY~tGtn~~~~wvGGIv-----~sGF~ntlIENNVfDG~ 76 (198)
T PF08480_consen 2 DDIEIYNNTIYNTYGPGIWLFGYDGSYSKDSAKNVHIHHNIFYDTGTNPNIDWVGGIV-----TSGFYNTLIENNVFDGV 76 (198)
T ss_pred CceEEecceeecccCceEEEEecCCCCCccccccEEEECcEeecCCcCCCCceeeeEE-----eccccccEEEeeeeccc
Confidence 3677777777651 1122 1111 246888888888742 1 11 11111 24567778888888887
Q ss_pred ce
Q 041993 270 QN 271 (391)
Q Consensus 270 ~~ 271 (391)
..
T Consensus 77 y~ 78 (198)
T PF08480_consen 77 YH 78 (198)
T ss_pred cc
Confidence 54
No 113
>PLN02634 probable pectinesterase
Probab=79.19 E-value=44 Score=32.69 Aligned_cols=112 Identities=8% Similarity=0.083 Sum_probs=70.8
Q ss_pred ceeeEEEEeEEEEcCCC-----CCCCCceeee-ccccEEEEeeEEecCCceEEeCCCceeEEEEeeEEcCCceEEEeecC
Q 041993 175 GCNNVKLKGVKVLASGN-----SPNTDGIHVQ-LSSDVTILNTRISTGDDCVSIGPGTSNLWIENVACGPGHGISIGSLG 248 (391)
Q Consensus 175 ~~~nv~i~n~~i~~~~~-----~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~~~~nv~i~n~~~~~~~gi~igs~g 248 (391)
..+++..+|++|.+... ......+-+. ...+..+.+|.|....|-+.... ..-.++||++.+.-.+=+|..
T Consensus 147 ~a~~F~a~niTf~Nta~~~~~g~~~~QAVAl~v~gDra~f~~C~f~G~QDTL~~~~--gR~yf~~CyIeG~VDFIFG~g- 223 (359)
T PLN02634 147 YANYFTARNISFKNTAPAPMPGMQGWQAVAFRISGDKAFFFGCGFYGAQDTLCDDA--GRHYFKECYIEGSIDFIFGNG- 223 (359)
T ss_pred ECCCeEEEeCeEEeCCccCCCCCCCCceEEEEecCCcEEEEEeEEecccceeeeCC--CCEEEEeeEEcccccEEcCCc-
Confidence 34677788888877531 1122233332 25889999999999888776543 468899999987767666542
Q ss_pred CCCCCCcEEEEEEEeeEEeCCc--eEEEEEEecCCCCeeEEEEEEEEEEEecC
Q 041993 249 KDLNEAGVQNVTVKTVTFTGTQ--NGLRIKSWGRPSNGFARNILFRNAIMKNV 299 (391)
Q Consensus 249 ~~~~~~~i~nI~i~n~~~~~~~--~gi~i~~~~~~~~g~i~nI~~~ni~~~~~ 299 (391)
...|+||.+.... .| .|..........-....|.|+++...
T Consensus 224 ---------~a~Fe~C~I~s~~~~~g-~ITA~~R~~~~~~~GfvF~~C~vtg~ 266 (359)
T PLN02634 224 ---------RSMYKDCELHSIASRFG-SIAAHGRTCPEEKTGFAFVGCRVTGT 266 (359)
T ss_pred ---------eEEEeccEEEEecCCCc-EEEeCCCCCCCCCcEEEEEcCEEcCC
Confidence 3568888887542 23 23322211122335689999999864
No 114
>PF09251 PhageP22-tail: Salmonella phage P22 tail-spike; InterPro: IPR015331 This entry is represented by the Bacteriophage P22, Gp9, tailspike protein (TSP). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The TSP C-terminal domain adopts a structure that consists of a single-stranded right-handed beta-helix, which in turn is made of parallel beta-strands and short turns. They are required for recognition of the 0-antigenic repeating units of the cell surface, and for subsequent infection of the bacterial cell by the phage []. ; PDB: 1QA3_A 1QRB_A 2XC1_C 1QA2_A 1TYX_A 2VFQ_A 2VFO_A 1TYU_A 2VFN_A 1QA1_A ....
Probab=78.38 E-value=37 Score=33.65 Aligned_cols=67 Identities=22% Similarity=0.308 Sum_probs=38.8
Q ss_pred cccEEEEeeEEec-CCceEEeCCC-----------------------ceeEEEEeeEEcCCceEEEeecCCCCCCCcEEE
Q 041993 203 SSDVTILNTRIST-GDDCVSIGPG-----------------------TSNLWIENVACGPGHGISIGSLGKDLNEAGVQN 258 (391)
Q Consensus 203 s~nv~I~n~~i~~-~dD~i~i~~~-----------------------~~nv~i~n~~~~~~~gi~igs~g~~~~~~~i~n 258 (391)
+-|..++|..... --|++.++++ -.|-.|+|+....+.|+.++-.| ..+.++|
T Consensus 263 nYnLqF~d~~~i~~~~DG~Dl~aDtg~~~~~dR~~D~~laqYp~~qLPtnHiidNi~~~~~lGVG~~~DG---~~~yvsn 339 (549)
T PF09251_consen 263 NYNLQFRDSVTISPVWDGFDLGADTGMGPETDRPGDYPLAQYPWHQLPTNHIIDNILVRGSLGVGIGMDG---KGGYVSN 339 (549)
T ss_dssp EBS-EEEEEEEES-SSESEEE-SS-SSSTTS--TTS--TTTS-TT------EEEEEEEES-SSESCEEEC---CS-EEEE
T ss_pred eeeEEEeccceEEEeecceeccCCCCCCCCccCCCCcchhhCchhhCchhhhhhhhheeccceeeeeecC---CCceEee
Confidence 4556666665543 5678888764 25888999999888888776654 2345777
Q ss_pred EEEEeeEEeCCceEEEEE
Q 041993 259 VTVKTVTFTGTQNGLRIK 276 (391)
Q Consensus 259 I~i~n~~~~~~~~gi~i~ 276 (391)
|++++|.- .|+.++
T Consensus 340 i~~~d~~g----~G~~~~ 353 (549)
T PF09251_consen 340 ITVQDCAG----AGIFIR 353 (549)
T ss_dssp EEEES-SS----ESEEEE
T ss_pred EEeecccC----CceEEe
Confidence 77766642 456555
No 115
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=76.22 E-value=11 Score=37.55 Aligned_cols=112 Identities=18% Similarity=0.231 Sum_probs=44.1
Q ss_pred eEEEEeEEEEcCC-C-CCCCCceeeec------cccEEEEeeEEecCC---ceEEeCCCceeEEEEeeEEcCCce-EEEe
Q 041993 178 NVKLKGVKVLASG-N-SPNTDGIHVQL------SSDVTILNTRISTGD---DCVSIGPGTSNLWIENVACGPGHG-ISIG 245 (391)
Q Consensus 178 nv~i~n~~i~~~~-~-~~~~DGi~~~~------s~nv~I~n~~i~~~d---D~i~i~~~~~nv~i~n~~~~~~~g-i~ig 245 (391)
.-+|+...+...+ . +.....|.+.. ..+.+|+++.|...| .-|++|+ ..-+|++++|..+.| +.+
T Consensus 165 ~h~IdhNyF~~rp~~g~NggEtIRiG~S~~S~~~s~t~Ve~NlFe~cdGE~EIISvKS--~~N~ir~Ntf~es~G~ltl- 241 (425)
T PF14592_consen 165 YHRIDHNYFGPRPPKGGNGGETIRIGTSHSSMSDSNTTVENNLFERCDGEVEIISVKS--SDNTIRNNTFRESQGSLTL- 241 (425)
T ss_dssp --EEES-EEE-E---SSS---SEEE-SSTT-B-----EEES-EEEEE-SSSEEEEEES--BT-EEES-EEES-SSEEEE-
T ss_pred CceEEeccccccCCCCCCCceeEEEecccccccccceeeecchhhhcCCceeEEEeec--CCceEeccEEEeccceEEE-
Confidence 4456666665321 1 22334555532 367778887777643 3356665 455667777766654 544
Q ss_pred ecCCCCCCCcEEEEEEEeeEEeCCc-----eEEEEEEecCCCCeeEEEEEEEEEEEecCCccEE
Q 041993 246 SLGKDLNEAGVQNVTVKTVTFTGTQ-----NGLRIKSWGRPSNGFARNILFRNAIMKNVQNPII 304 (391)
Q Consensus 246 s~g~~~~~~~i~nI~i~n~~~~~~~-----~gi~i~~~~~~~~g~i~nI~~~ni~~~~~~~~i~ 304 (391)
-+| .+-+|+++.|.+.. .||+|-. .+-.|.|-.|++++-....-++.
T Consensus 242 RHG--------n~n~V~gN~FiGng~~~~tGGIRIi~----~~H~I~nNY~~gl~g~~~~~~~~ 293 (425)
T PF14592_consen 242 RHG--------NRNTVEGNVFIGNGVKEGTGGIRIIG----EGHTIYNNYFEGLTGTRFRGALA 293 (425)
T ss_dssp EE---------SS-EEES-EEEE-SSSS-B--EEE-S----BS-EEES-EEEESSB-TTTTSEE
T ss_pred ecC--------CCceEeccEEecCCCcCCCCceEEec----CCcEEEcceeeccccceeeccee
Confidence 121 11345555555431 2566542 22355555666655544444444
No 116
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=74.27 E-value=60 Score=28.47 Aligned_cols=93 Identities=15% Similarity=0.082 Sum_probs=51.1
Q ss_pred cccEEEEeeEEec-C-------CceEEeCCCceeEEEEeeEEcCCc--eEEE-eecCCCCCCCcEEEEEEEeeEEeCCc-
Q 041993 203 SSDVTILNTRIST-G-------DDCVSIGPGTSNLWIENVACGPGH--GISI-GSLGKDLNEAGVQNVTVKTVTFTGTQ- 270 (391)
Q Consensus 203 s~nv~I~n~~i~~-~-------dD~i~i~~~~~nv~i~n~~~~~~~--gi~i-gs~g~~~~~~~i~nI~i~n~~~~~~~- 270 (391)
.+||+|+++.|.. | -.+|.. +|-.|.+|||+.|.+.. ++.- .........+.-.-.+++|+.+.++.
T Consensus 33 a~nVhIhhN~fY~tGtn~~~~wvGGIv~-sGF~ntlIENNVfDG~y~aai~~~y~~~~~sp~gsgyttivRNNII~NT~~ 111 (198)
T PF08480_consen 33 AKNVHIHHNIFYDTGTNPNIDWVGGIVT-SGFYNTLIENNVFDGVYHAAIAQMYPDYDLSPKGSGYTTIVRNNIIVNTRK 111 (198)
T ss_pred cccEEEECcEeecCCcCCCCceeeeEEe-ccccccEEEeeeecccccceEEEEecccccCCCCCceEEEEEcceEeeeee
Confidence 3688888888875 2 123322 33578899999998764 3332 11210111222333778888887754
Q ss_pred -------eEEEEEEecCCCCeeEEEEEEEEEEEecCC
Q 041993 271 -------NGLRIKSWGRPSNGFARNILFRNAIMKNVQ 300 (391)
Q Consensus 271 -------~gi~i~~~~~~~~g~i~nI~~~ni~~~~~~ 300 (391)
.|..|...- ..-..+.++|..+-+..
T Consensus 112 r~~~~~GtGYgv~N~L----~~tHsFvLenNclYnN~ 144 (198)
T PF08480_consen 112 RKSSPAGTGYGVINYL----PETHSFVLENNCLYNNA 144 (198)
T ss_pred cccCCCCceeEEEecC----CCcceEEEEccceeccC
Confidence 244444321 12345667777666543
No 117
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3.1.1.11 from EC (pectin methylesterase) catalyses the de-esterification of pectin into pectate and methanol. Pectin is one of the main components of the plant cell wall. In plants, pectinesterase plays an important role in cell wall metabolism during fruit ripening. In plant bacterial pathogens such as Erwinia carotovora and in fungal pathogens such as Aspergillus niger, pectinesterase is involved in maceration and soft-rotting of plant tissue. Plant pectinesterases are regulated by pectinesterase inhibitors, which are ineffective against microbial enzymes []. Prokaryotic and eukaryotic pectinesterases share a few regions of sequence similarity. The crystal structure of pectinesterase from Erwinia chrysanthemi revealed a beta-helix structure similar to that found in pectinolytic enzymes, though it is different from most structures of esterases []. The putative catalytic residues are in a similar location to those of the active site and substrate-binding cleft of pectate lyase.; GO: 0030599 pectinesterase activity, 0042545 cell wall modification, 0005618 cell wall; PDB: 1QJV_B 1XG2_A 1GQ8_A 2NTQ_A 2NTP_A 2NT9_A 2NT6_B 2NSP_B 2NTB_A 2NST_A ....
Probab=64.39 E-value=73 Score=30.33 Aligned_cols=136 Identities=15% Similarity=0.146 Sum_probs=63.7
Q ss_pred EEEeecceEEEeEEEecCCce------eEEEeceeeEEEEeEEEEcCCCCCCCCceeeeccccEEEEeeEEecCCceEEe
Q 041993 149 GFSNCNNIAINGLTSLNSQMY------HVVFNGCNNVKLKGVKVLASGNSPNTDGIHVQLSSDVTILNTRISTGDDCVSI 222 (391)
Q Consensus 149 ~~~~~~nv~i~~v~i~n~~~~------~i~~~~~~nv~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i 222 (391)
.....+++.+++++|.|.... .+.+ ..+...+.+|.|.... |-+... ..+..++||.|...-|-|--
T Consensus 82 ~~v~a~~f~~~nit~~Nt~g~~~~qAvAl~~-~~d~~~f~~c~~~g~Q-----DTL~~~-~~r~y~~~c~IeG~vDFIfG 154 (298)
T PF01095_consen 82 FSVNADDFTAENITFENTAGPSGGQAVALRV-SGDRAAFYNCRFLGYQ-----DTLYAN-GGRQYFKNCYIEGNVDFIFG 154 (298)
T ss_dssp EEE-STT-EEEEEEEEEHCSGSG----SEEE-T-TSEEEEEEEEE-ST-----T-EEE--SSEEEEES-EEEESEEEEEE
T ss_pred ccccccceeeeeeEEecCCCCcccceeeeee-cCCcEEEEEeEEcccc-----ceeeec-cceeEEEeeEEEecCcEEEC
Confidence 344688999999999876421 2332 3466777777777632 333333 24566777777765554332
Q ss_pred CCCceeEEEEeeEEcCC-----ceEEEeecCCCCCCCcEEEEEEEeeEEeCCce--------EEEEEEecCCCCeeEEEE
Q 041993 223 GPGTSNLWIENVACGPG-----HGISIGSLGKDLNEAGVQNVTVKTVTFTGTQN--------GLRIKSWGRPSNGFARNI 289 (391)
Q Consensus 223 ~~~~~nv~i~n~~~~~~-----~gi~igs~g~~~~~~~i~nI~i~n~~~~~~~~--------gi~i~~~~~~~~g~i~nI 289 (391)
.....+++|++... ..-.|=..+. .....-....|.||++..... ...+. . .++.-..+
T Consensus 155 ---~~~a~f~~c~i~~~~~~~~~~~~ItA~~r-~~~~~~~G~vF~~c~i~~~~~~~~~~~~~~~yLG---R-pW~~~s~v 226 (298)
T PF01095_consen 155 ---NGTAVFENCTIHSRRPGGGQGGYITAQGR-TSPSQKSGFVFDNCTITGDSGVSPSYSDGSVYLG---R-PWGPYSRV 226 (298)
T ss_dssp ---SSEEEEES-EEEE--SSTSSTEEEEEE----CTTSS-EEEEES-EEEESTTTCGGCCCSTEEEE------SSEETEE
T ss_pred ---CeeEEeeeeEEEEeccccccceeEEeCCc-cccCCCeEEEEEEeEEecCccccccccceeEEec---C-cccceeeE
Confidence 23566777777531 1111111110 011223456777777776421 12222 1 23344567
Q ss_pred EEEEEEEecC
Q 041993 290 LFRNAIMKNV 299 (391)
Q Consensus 290 ~~~ni~~~~~ 299 (391)
+|.|+.|.+.
T Consensus 227 vf~~t~m~~~ 236 (298)
T PF01095_consen 227 VFINTYMDDH 236 (298)
T ss_dssp EEES-EE-TT
T ss_pred EEEccccCCe
Confidence 7777777653
No 118
>PLN02916 pectinesterase family protein
Probab=55.36 E-value=2.5e+02 Score=28.90 Aligned_cols=115 Identities=8% Similarity=0.064 Sum_probs=76.1
Q ss_pred eceeeEEEEeEEEEcCCCCCCCCceeee-ccccEEEEeeEEecCCceEEeCCCceeEEEEeeEEcCCceEEEeecCCCCC
Q 041993 174 NGCNNVKLKGVKVLASGNSPNTDGIHVQ-LSSDVTILNTRISTGDDCVSIGPGTSNLWIENVACGPGHGISIGSLGKDLN 252 (391)
Q Consensus 174 ~~~~nv~i~n~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~~~~nv~i~n~~~~~~~gi~igs~g~~~~ 252 (391)
...+++..+|++|.+.........+-+. .+....+.+|.|....|-+...+ ..-.+++|+|.+.-.+=+|..
T Consensus 274 v~~~~F~A~nitf~Ntag~~~~QAVALrv~~D~a~fy~C~f~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~a----- 346 (502)
T PLN02916 274 VSGDGFWARDITFENTAGPHKHQAVALRVSSDLSVFYRCSFKGYQDTLFVHS--LRQFYRDCHIYGTIDFIFGDA----- 346 (502)
T ss_pred EECCCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEeccCceeEeCC--CCEEEEecEEecccceeccCc-----
Confidence 3457888999999886432233334443 35889999999999888887765 346889999988777766552
Q ss_pred CCcEEEEEEEeeEEeCCc----eEEEEEEecCCCCeeEEEEEEEEEEEecCC
Q 041993 253 EAGVQNVTVKTVTFTGTQ----NGLRIKSWGRPSNGFARNILFRNAIMKNVQ 300 (391)
Q Consensus 253 ~~~i~nI~i~n~~~~~~~----~gi~i~~~~~~~~g~i~nI~~~ni~~~~~~ 300 (391)
...|+||.+.-.. ..-.|..........-..+.|.|+++....
T Consensus 347 -----~avFq~C~I~~~~~~~~~~g~ITAq~r~~~~~~tGfvf~~C~it~~~ 393 (502)
T PLN02916 347 -----AVVFQNCDIFVRRPMDHQGNMITAQGRDDPHENTGISIQHSRVRASP 393 (502)
T ss_pred -----eEEEecCEEEEecCCCCCcceEEecCCCCCCCCcEEEEEeeEEecCc
Confidence 3668888886432 112343322212233467999999998753
No 119
>smart00722 CASH Domain present in carbohydrate binding proteins and sugar hydrolses.
Probab=54.63 E-value=1.1e+02 Score=24.53 Aligned_cols=68 Identities=16% Similarity=0.192 Sum_probs=46.9
Q ss_pred EeecceEEEeEEEecCC---ceeEEEeceeeEEEEeEEEEcCCCCCCCCceeeeccccEEEEe-eEEecCCceEE
Q 041993 151 SNCNNIAINGLTSLNSQ---MYHVVFNGCNNVKLKGVKVLASGNSPNTDGIHVQLSSDVTILN-TRISTGDDCVS 221 (391)
Q Consensus 151 ~~~~nv~i~~v~i~n~~---~~~i~~~~~~nv~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n-~~i~~~dD~i~ 221 (391)
...++..+++-.+.+.. .+++.+..+.+..+.+..+. .. .. .+|++++.+.+..+.+ .......|++.
T Consensus 73 ~~~~~~~i~~N~~~~~~~~~~~Gi~~~~~~~~~~~~N~i~-~~-~~-g~G~~~~~~~~~~~~~~~~~~~~~~Gi~ 144 (146)
T smart00722 73 QNTGKNLIIDNVTINGTEGSGAGIVVTAGSEGLFIGNRII-TN-ND-GDGNYLSDSSGGDLIGNRIYDNGRDGIA 144 (146)
T ss_pred cCccccEEEcceecCCCccceEEEEEECCccceEecCeEE-ee-cC-CCCEEEeCCCCcEEEcceeEecCCCcEe
Confidence 56777778777777663 78888887776666666555 21 12 6899999888888877 55555556554
No 120
>smart00710 PbH1 Parallel beta-helix repeats. The tertiary structures of pectate lyases and rhamnogalacturonase A show a stack of parallel beta strands that are coiled into a large helix. Each coil of the helix represents a structural repeat that, in some homologues, can be recognised from sequence information alone. Conservation of asparagines might be connected with asparagine-ladders that contribute to the stability of the fold. Proteins containing these repeats most often are enzymes with polysaccharide substrates.
Probab=52.13 E-value=16 Score=19.77 Aligned_cols=19 Identities=32% Similarity=0.464 Sum_probs=12.2
Q ss_pred EEEEEeeEEeCCce-EEEEE
Q 041993 258 NVTVKTVTFTGTQN-GLRIK 276 (391)
Q Consensus 258 nI~i~n~~~~~~~~-gi~i~ 276 (391)
+++|+++++.+... |+.+.
T Consensus 3 ~~~i~~n~i~~~~~~Gi~i~ 22 (26)
T smart00710 3 NVTIENNTIRNNGGDGIYIG 22 (26)
T ss_pred CEEEECCEEEeCCCCcEEEe
Confidence 46677777776655 66554
No 121
>PLN02313 Pectinesterase/pectinesterase inhibitor
Probab=50.55 E-value=2.6e+02 Score=29.40 Aligned_cols=114 Identities=7% Similarity=0.112 Sum_probs=69.9
Q ss_pred ceeeEEEEeEEEEcCCCCCCCCceeee-ccccEEEEeeEEecCCceEEeCCCceeEEEEeeEEcCCceEEEeecCCCCCC
Q 041993 175 GCNNVKLKGVKVLASGNSPNTDGIHVQ-LSSDVTILNTRISTGDDCVSIGPGTSNLWIENVACGPGHGISIGSLGKDLNE 253 (391)
Q Consensus 175 ~~~nv~i~n~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~~~~nv~i~n~~~~~~~gi~igs~g~~~~~ 253 (391)
..+++..+|++|.+.........+-+. .+....+.+|.|....|-+...+ ..-.+++|++.+.-.+=+|..
T Consensus 360 ~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~g~QDTLy~~~--~rq~y~~c~I~GtvDFIFG~a------ 431 (587)
T PLN02313 360 VGERFLARDITFQNTAGPSKHQAVALRVGSDFSAFYQCDMFAYQDTLYVHS--NRQFFVKCHITGTVDFIFGNA------ 431 (587)
T ss_pred ECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeEecccchhccCC--CcEEEEeeEEeeccceeccce------
Confidence 456788888888875432222333332 25778888999988777776665 234888888877666655442
Q ss_pred CcEEEEEEEeeEEeCCce--E--EEEEEecCCCCeeEEEEEEEEEEEecCC
Q 041993 254 AGVQNVTVKTVTFTGTQN--G--LRIKSWGRPSNGFARNILFRNAIMKNVQ 300 (391)
Q Consensus 254 ~~i~nI~i~n~~~~~~~~--g--i~i~~~~~~~~g~i~nI~~~ni~~~~~~ 300 (391)
...|+||.+.-... + -.|..+.......-..+.|.|+++....
T Consensus 432 ----~avfq~c~i~~r~~~~~~~~~iTAqgr~~~~~~tG~v~~~c~i~~~~ 478 (587)
T PLN02313 432 ----AAVLQDCDINARRPNSGQKNMVTAQGRSDPNQNTGIVIQNCRIGGTS 478 (587)
T ss_pred ----eEEEEccEEEEecCCCCCcceEEecCCCCCCCCceEEEEecEEecCC
Confidence 36788888864311 1 1233222212233457899999998654
No 122
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=49.75 E-value=3.3e+02 Score=28.48 Aligned_cols=114 Identities=8% Similarity=0.126 Sum_probs=75.8
Q ss_pred ceeeEEEEeEEEEcCCCCCCCCceeee-ccccEEEEeeEEecCCceEEeCCCceeEEEEeeEEcCCceEEEeecCCCCCC
Q 041993 175 GCNNVKLKGVKVLASGNSPNTDGIHVQ-LSSDVTILNTRISTGDDCVSIGPGTSNLWIENVACGPGHGISIGSLGKDLNE 253 (391)
Q Consensus 175 ~~~nv~i~n~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~~~~nv~i~n~~~~~~~gi~igs~g~~~~~ 253 (391)
..+++..+|++|.+.........+-+. .+..+.+.||.|....|-+...+ ..-.+++|+|.+.-.+=+|..
T Consensus 328 ~~~~f~a~~it~~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G~QDTLy~~~--~rq~y~~C~I~GtVDFIFG~a------ 399 (553)
T PLN02708 328 LGDGFMARDLTIQNTAGPDAHQAVAFRSDSDLSVIENCEFLGNQDTLYAHS--LRQFYKSCRIQGNVDFIFGNS------ 399 (553)
T ss_pred EcCCeEEEeeEEEcCCCCCCCceEEEEecCCcEEEEeeeeeeccccceeCC--CceEEEeeEEeecCCEEecCc------
Confidence 457899999999986432223344443 25889999999999888887765 335689999988777777553
Q ss_pred CcEEEEEEEeeEEeCC------c--eEEEEEEecCCCCeeEEEEEEEEEEEecCC
Q 041993 254 AGVQNVTVKTVTFTGT------Q--NGLRIKSWGRPSNGFARNILFRNAIMKNVQ 300 (391)
Q Consensus 254 ~~i~nI~i~n~~~~~~------~--~gi~i~~~~~~~~g~i~nI~~~ni~~~~~~ 300 (391)
...|+||.+.-. . ..-.|..........-..+.|.|+++....
T Consensus 400 ----~avfq~c~i~~~~~~~~~~~~~~~~iTA~~r~~~~~~~G~vf~~C~it~~~ 450 (553)
T PLN02708 400 ----AAVFQDCAILIAPRQLKPEKGENNAVTAHGRTDPAQSTGFVFQNCLINGTE 450 (553)
T ss_pred ----eEEEEccEEEEeccccCCCCCCceEEEeCCCCCCCCCceEEEEccEEecCC
Confidence 467888888732 1 112333222112233457999999997653
No 123
>PLN02506 putative pectinesterase/pectinesterase inhibitor
Probab=46.94 E-value=2.8e+02 Score=28.84 Aligned_cols=115 Identities=7% Similarity=0.053 Sum_probs=75.9
Q ss_pred EeceeeEEEEeEEEEcCCCCCCCCceeee-ccccEEEEeeEEecCCceEEeCCCceeEEEEeeEEcCCceEEEeecCCCC
Q 041993 173 FNGCNNVKLKGVKVLASGNSPNTDGIHVQ-LSSDVTILNTRISTGDDCVSIGPGTSNLWIENVACGPGHGISIGSLGKDL 251 (391)
Q Consensus 173 ~~~~~nv~i~n~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~~~~nv~i~n~~~~~~~gi~igs~g~~~ 251 (391)
....+++..+|++|.+.........+-+. ...++.+.+|.|....|-+...+ ..-.++||+|.+.-.+=+|..
T Consensus 315 ~v~~~~F~a~nit~~Ntag~~~~QAVAl~v~~D~~~fy~C~~~G~QDTLy~~~--~rqyy~~C~I~GtVDFIFG~a---- 388 (537)
T PLN02506 315 AVSGRGFIARDITFRNTAGPQNHQAVALRVDSDQSAFYRCSMEGYQDTLYAHS--LRQFYRECEIYGTIDFIFGNG---- 388 (537)
T ss_pred EEEcCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeecccccceecC--CceEEEeeEEecccceEccCc----
Confidence 34568899999999986432223334333 25899999999999888777665 346899999988777767553
Q ss_pred CCCcEEEEEEEeeEEeCCce----EEEEEEecCCCCeeEEEEEEEEEEEecC
Q 041993 252 NEAGVQNVTVKTVTFTGTQN----GLRIKSWGRPSNGFARNILFRNAIMKNV 299 (391)
Q Consensus 252 ~~~~i~nI~i~n~~~~~~~~----gi~i~~~~~~~~g~i~nI~~~ni~~~~~ 299 (391)
...|+||.+.-... .-.|..........-..+.|.|+++...
T Consensus 389 ------~avfq~C~i~~r~~~~~~~~~iTA~~r~~~~~~~G~vf~~c~i~~~ 434 (537)
T PLN02506 389 ------AAVLQNCKIYTRVPLPLQKVTITAQGRKSPHQSTGFSIQDSYVLAT 434 (537)
T ss_pred ------eeEEeccEEEEccCCCCCCceEEccCCCCCCCCcEEEEEcCEEccC
Confidence 36788888874321 1233332211222345688999999864
No 124
>PF08194 DIM: DIM protein; InterPro: IPR013172 Drosophila immune-induced molecules (DIMs) are short proteins induced during the immune response of Drosophila []. This entry includes DIMs 1 to 4 and DIM23.
Probab=45.55 E-value=31 Score=21.60 Aligned_cols=14 Identities=29% Similarity=0.515 Sum_probs=7.7
Q ss_pred CcchhhHHHHHHHH
Q 041993 1 MCYFHFLISILLLS 14 (391)
Q Consensus 1 m~~~~~~~~~~~~~ 14 (391)
|+.+.+.|+++++.
T Consensus 1 Mk~l~~a~~l~lLa 14 (36)
T PF08194_consen 1 MKCLSLAFALLLLA 14 (36)
T ss_pred CceeHHHHHHHHHH
Confidence 77776644444443
No 125
>PF10162 G8: G8 domain; InterPro: IPR019316 This entry represents a domain found in disease proteins PKHD1 and KIAA1199 and is named G8 after its 8 conserved glycines. It is predicted to contain 10 beta strands and an alpha helix [].
Probab=38.19 E-value=1e+02 Score=25.03 Aligned_cols=54 Identities=20% Similarity=0.317 Sum_probs=32.6
Q ss_pred CCcEEEEcCCeEEEeeeeeeCCccCccEEEEEccEEEeccCccccCCCCceEEEEeeeeeEEec-eeEe
Q 041993 58 RAATIYVPPGRFFLRNVAFQGPCKNNRITIRIDGTLVAPSDYRVIGNAGNWLFFQHVDGVTLNS-GILD 125 (391)
Q Consensus 58 ~g~~v~ip~G~Y~~~~~~l~~~~~s~~~~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~ni~I~G-G~id 125 (391)
.+..|+||+|...+-..... . --.|.++|+|.+.++. . +.+. ++.|.|.| |.+.
T Consensus 11 ~g~~V~I~~g~~v~lD~~~~----~-l~~l~I~G~L~f~~~~-~-------~~L~-a~~I~V~~Gg~l~ 65 (125)
T PF10162_consen 11 AGDNVVIPAGQTVLLDVSTP----K-LGSLIIGGTLIFDDDR-D-------ITLR-AEYILVEGGGRLI 65 (125)
T ss_pred CCCEEEECCCCEEEEcCCCh----h-eeEEEEEEEEEEccCC-C-------CEEE-EEEEEECCCCeEE
Confidence 47899999997654332322 1 2345558999887651 1 2232 67788887 4554
No 126
>PLN02933 Probable pectinesterase/pectinesterase inhibitor
Probab=37.85 E-value=4.9e+02 Score=27.06 Aligned_cols=116 Identities=6% Similarity=0.061 Sum_probs=75.4
Q ss_pred EeceeeEEEEeEEEEcCCCCCCCCceeee-ccccEEEEeeEEecCCceEEeCCCceeEEEEeeEEcCCceEEEeecCCCC
Q 041993 173 FNGCNNVKLKGVKVLASGNSPNTDGIHVQ-LSSDVTILNTRISTGDDCVSIGPGTSNLWIENVACGPGHGISIGSLGKDL 251 (391)
Q Consensus 173 ~~~~~nv~i~n~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~~~~nv~i~n~~~~~~~gi~igs~g~~~ 251 (391)
....+++..+|++|.+.........+-+. .+....+.+|.|....|-+...+ ..-.+++|+|.+.-.+=+|..
T Consensus 301 ~v~a~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~QDTLy~~~--~Rqyy~~C~IeGtVDFIFG~a---- 374 (530)
T PLN02933 301 GVKGKGFIAKDISFVNYAGPAKHQAVALRSGSDHSAFYRCEFDGYQDTLYVHS--AKQFYRECDIYGTIDFIFGNA---- 374 (530)
T ss_pred EEECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEEeEEEecccccccCC--CceEEEeeEEecccceeccCc----
Confidence 33457899999999886432223344443 25889999999999888777665 345999999988777767553
Q ss_pred CCCcEEEEEEEeeEEeCCc----eEEEEEEecCCCCeeEEEEEEEEEEEecCC
Q 041993 252 NEAGVQNVTVKTVTFTGTQ----NGLRIKSWGRPSNGFARNILFRNAIMKNVQ 300 (391)
Q Consensus 252 ~~~~i~nI~i~n~~~~~~~----~gi~i~~~~~~~~g~i~nI~~~ni~~~~~~ 300 (391)
...|+||.+.-.. ..-.|-.........-..+.|.|+++....
T Consensus 375 ------~avFq~C~i~~~~~~~~~~~~iTAq~r~~~~~~tGfvf~~C~it~~~ 421 (530)
T PLN02933 375 ------AVVFQNCSLYARKPNPNHKIAFTAQSRNQSDQPTGISIISSRILAAP 421 (530)
T ss_pred ------eEEEeccEEEEeccCCCCceEEEecCCCCCCCCceEEEEeeEEecCC
Confidence 3568888886432 111233222212223456999999998643
No 127
>PF11912 DUF3430: Protein of unknown function (DUF3430); InterPro: IPR021837 This family of proteins are functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 209 to 265 amino acids in length.
Probab=30.56 E-value=54 Score=29.08 Aligned_cols=30 Identities=23% Similarity=0.204 Sum_probs=18.4
Q ss_pred CcchhhHHHHHHHHHHHhccCCCCCeEEeecCC
Q 041993 1 MCYFHFLISILLLSIFNTSSLAAPPSYNVVSFG 33 (391)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~G 33 (391)
||++..|++++++++.. ......+++..|.
T Consensus 1 MKll~~lilli~~~~~~---~~~~~yvn~~py~ 30 (212)
T PF11912_consen 1 MKLLISLILLILLIINF---SSSSQYVNFQPYQ 30 (212)
T ss_pred CcHHHHHHHHHHHHHhh---hcCCcEEEEEEec
Confidence 77765444443333322 2677789999997
No 128
>PF12099 DUF3575: Protein of unknown function (DUF3575); InterPro: IPR021958 This family of proteins are functionally uncharacterised. This family is only found in bacteria. Proteins in this family are typically between 187 to 236 amino acids in length.
Probab=26.39 E-value=70 Score=28.21 Aligned_cols=29 Identities=28% Similarity=0.175 Sum_probs=19.6
Q ss_pred CcchhhHHHHHHHHHHHhccCCCCCeEEe
Q 041993 1 MCYFHFLISILLLSIFNTSSLAAPPSYNV 29 (391)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~v 29 (391)
|+..+++++++++++......+.++.+.|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~q~~av 29 (189)
T PF12099_consen 1 MKKIRILFLLLLLFCSLSPSNARAQKVAV 29 (189)
T ss_pred CceehHHHHHHHHHHHhccccccceEEEE
Confidence 77777777766665555545667777777
No 129
>KOG1777 consensus Putative Zn-finger protein [General function prediction only]
Probab=26.04 E-value=94 Score=31.09 Aligned_cols=29 Identities=21% Similarity=0.345 Sum_probs=20.2
Q ss_pred CceeeeccccEEEEeeEEecCCceEEeCC
Q 041993 196 DGIHVQLSSDVTILNTRISTGDDCVSIGP 224 (391)
Q Consensus 196 DGi~~~~s~nv~I~n~~i~~~dD~i~i~~ 224 (391)
.|+.+.--+|=+|+.+.|++++.++-+..
T Consensus 419 sgvqirtGsNP~i~~NkIWggqNGvLVyn 447 (625)
T KOG1777|consen 419 SGVQIRTGSNPKIRRNKIWGGQNGVLVYN 447 (625)
T ss_pred cceEeecCCCCeeeecceecCcccEEEEc
Confidence 35666555677888888888877766554
No 130
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=24.86 E-value=50 Score=25.67 Aligned_cols=9 Identities=33% Similarity=0.198 Sum_probs=3.6
Q ss_pred HHHhccCCC
Q 041993 15 IFNTSSLAA 23 (391)
Q Consensus 15 ~~~~~~~~~ 23 (391)
+|++++..+
T Consensus 16 lLlisSeva 24 (95)
T PF07172_consen 16 LLLISSEVA 24 (95)
T ss_pred HHHHHhhhh
Confidence 344444333
No 131
>COG4704 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.06 E-value=1.5e+02 Score=24.54 Aligned_cols=36 Identities=14% Similarity=0.255 Sum_probs=20.7
Q ss_pred cccHHHHHHHHHHHcCC-CCCcEEEEcCCeEEEeeee
Q 041993 40 TDSTKAFLSAWANACGS-PRAATIYVPPGRFFLRNVA 75 (391)
Q Consensus 40 ~d~t~aiq~Ai~~a~~~-~~g~~v~ip~G~Y~~~~~~ 75 (391)
.++...||+|=.....+ ..-...-+|||+|-+..++
T Consensus 59 ~~~~~~f~ractsit~dpv~~~f~~Lk~G~YAvaa~q 95 (151)
T COG4704 59 MSDPSRFQRACTSITGDPVSKSFYGLKPGKYAVAAFQ 95 (151)
T ss_pred CCCchHHhhhcccccCCchhheeecCCCccEEEEEEE
Confidence 56788888883322111 1112345799999886433
No 132
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism]
Probab=21.94 E-value=2.8e+02 Score=26.83 Aligned_cols=40 Identities=18% Similarity=0.244 Sum_probs=21.1
Q ss_pred EEeecceEEEeEEEecCCceeE---------EEeceeeEEEEeEEEEcC
Q 041993 150 FSNCNNIAINGLTSLNSQMYHV---------VFNGCNNVKLKGVKVLAS 189 (391)
Q Consensus 150 ~~~~~nv~i~~v~i~n~~~~~i---------~~~~~~nv~i~n~~i~~~ 189 (391)
+..-+++..++++++|....+. .-...+-+.++||.+...
T Consensus 185 ~v~~ndf~~~nlT~en~~gd~~lagn~~AVaL~~dgDka~frnv~llg~ 233 (405)
T COG4677 185 WVQNNDFQLQNLTIENTLGDGVLAGNHPAVALATDGDKAIFRNVNLLGN 233 (405)
T ss_pred eeecCCcccccceeecccCCccccCCceeEEEEecCCceeeeeeeEeec
Confidence 3345556666666665543321 122445666777766653
No 133
>smart00722 CASH Domain present in carbohydrate binding proteins and sugar hydrolses.
Probab=21.81 E-value=4.1e+02 Score=21.04 Aligned_cols=13 Identities=23% Similarity=0.514 Sum_probs=6.5
Q ss_pred ecceEEEeEEEec
Q 041993 153 CNNIAINGLTSLN 165 (391)
Q Consensus 153 ~~nv~i~~v~i~n 165 (391)
..+++++|+++.+
T Consensus 44 ~~~~~~~G~~~~~ 56 (146)
T smart00722 44 SNDVRVDGITIGG 56 (146)
T ss_pred CCCCEEECeEEEe
Confidence 3444555555544
No 134
>PHA00672 hypothetical protein
Probab=21.78 E-value=1.6e+02 Score=24.10 Aligned_cols=18 Identities=22% Similarity=0.242 Sum_probs=13.2
Q ss_pred cEEEEcCCeEEEeeeeee
Q 041993 60 ATIYVPPGRFFLRNVAFQ 77 (391)
Q Consensus 60 ~~v~ip~G~Y~~~~~~l~ 77 (391)
.++.+|+|+-+++.+.-.
T Consensus 50 Rei~IPkGt~LtG~~hkf 67 (152)
T PHA00672 50 RTIRIPAGVALTGALIKV 67 (152)
T ss_pred EEEeccCceeeeeeeeEe
Confidence 478899999888765443
Done!