BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042000
(249 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 105 bits (261), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 83/239 (34%), Positives = 126/239 (52%), Gaps = 19/239 (7%)
Query: 2 LVLSNNSLNGHMFPRNFNLTNLRWLQLDGNHFVGENPQSLS-KCSSLEGLYLNNNSLSGK 60
L +S+N G + P L +L++L L N F GE P LS C +L GL L+ N G
Sbjct: 252 LNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGA 309
Query: 61 IPRWLGNLTRLNHIIMPENHLEGLIP-----------ILDISDNNISGRLPSCTFSNCSS 109
+P + G+ + L + + N+ G +P +LD+S N SG LP + +S
Sbjct: 310 VPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSAS 369
Query: 110 LVTLDLSYNRINGSIPEWNIAYIYQGKVLSLLSGLDLSCNKLISHIPPQIGNLTRIETLN 169
L+TLDLS N +G I + + Q + L L L N IPP + N + + +L+
Sbjct: 370 LLTLDLSSNNFSGPI----LPNLCQNPK-NTLQELYLQNNGFTGKIPPTLSNCSELVSLH 424
Query: 170 LSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLAIFSVAYNNLSGEIP 228
LS N L+G+IPS+ +L + L L N L G+IP +L+ +KTL + +N+L+GEIP
Sbjct: 425 LSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIP 483
Score = 103 bits (256), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 103/322 (31%), Positives = 142/322 (44%), Gaps = 75/322 (23%)
Query: 1 SLVLSNNSLNGHMFPRNFNLTNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGK 60
SL LS N L+G + +L+ LR L+L N GE PQ L +LE L L+ N L+G+
Sbjct: 422 SLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGE 481
Query: 61 IPRWLGNLTRLNHIIMPENHLEGLIP----------ILDISDNNISGRLPSCTFSNCSSL 110
IP L N T LN I + N L G IP IL +S+N+ SG +P+ +C SL
Sbjct: 482 IPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA-ELGDCRSL 540
Query: 111 VTLDLSYNRINGSIPEW------NIA--------YIY------------QGKVLSLLSGL 144
+ LDL+ N NG+IP IA Y+Y G +L
Sbjct: 541 IWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIR 600
Query: 145 DLSCNKLIS-------------HIPPQIGNLTRIETLNLSHNNL---------------- 175
N+L + H P N + L++S+N L
Sbjct: 601 SEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFI 660
Query: 176 --------TGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLAIFSVAYNNLSGEI 227
+GSIP +L+ + LDLS+NKL+G+IP + L L ++ NNLSG I
Sbjct: 661 LNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPI 720
Query: 228 PEWTAQFATFNESSYEGNTFLC 249
PE QF TF + + N LC
Sbjct: 721 PEM-GQFETFPPAKFLNNPGLC 741
Score = 99.8 bits (247), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 82/210 (39%), Positives = 117/210 (55%), Gaps = 21/210 (10%)
Query: 20 LTNLRWLQLDGNHFVGENPQSLSKCS-SLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPE 78
+ L+ L L N F GE P+SL+ S SL L L++N+ SG I L NL + P+
Sbjct: 342 MRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPI---LPNLCQ-----NPK 393
Query: 79 NHLEGLIPILDISDNNISGRLPSCTFSNCSSLVTLDLSYNRINGSIPEWNIAYIYQGKVL 138
N L+ L + +N +G++P T SNCS LV+L LS+N ++G+IP L
Sbjct: 394 NTLQELY----LQNNGFTGKIPP-TLSNCSELVSLHLSFNYLSGTIPS-------SLGSL 441
Query: 139 SLLSGLDLSCNKLISHIPPQIGNLTRIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNK 198
S L L L N L IP ++ + +ETL L N+LTG IPS SN ++ + LSNN+
Sbjct: 442 SKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNR 501
Query: 199 LNGKIPHQLVELKTLAIFSVAYNNLSGEIP 228
L G+IP + L+ LAI ++ N+ SG IP
Sbjct: 502 LTGEIPKWIGRLENLAILKLSNNSFSGNIP 531
Score = 57.8 bits (138), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 76/238 (31%), Positives = 107/238 (44%), Gaps = 36/238 (15%)
Query: 1 SLVLSNNSLNGHMFPRNF--NLTNLRWLQLDGN--HFVGENPQSLSKCSSLEGLYLNNNS 56
SL LS NSL+G + + + L++L + N F G+ L K +SLE L L+ NS
Sbjct: 104 SLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL-KLNSLEVLDLSANS 162
Query: 57 LSGK-IPRWL--GNLTRLNHIIMPENHLEGLIPILDISDNNISGRLPSCTFSNCSSLVTL 113
+SG + W+ L H L IS N ISG + S C +L L
Sbjct: 163 ISGANVVGWVLSDGCGELKH--------------LAISGNKISGDV---DVSRCVNLEFL 205
Query: 114 DLSYNRINGSIPEWNIAYIYQGKVLSLLSGLDLSCNKLISHIPPQIGNLTRIETLNLSHN 173
D+S N + IP + G S L LD+S NKL I T ++ LN+S N
Sbjct: 206 DVSSNNFSTGIP-------FLGDC-SALQHLDISGNKLSGDFSRAISTCTELKLLNISSN 257
Query: 174 NLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLV-ELKTLAIFSVAYNNLSGEIPEW 230
G IP LK ++ L L+ NK G+IP L TL ++ N+ G +P +
Sbjct: 258 QFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPF 313
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 105 bits (261), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 82/246 (33%), Positives = 125/246 (50%), Gaps = 33/246 (13%)
Query: 2 LVLSNNSLNGHMFPRNFNLTNLRWLQLDGNHFVGENPQSLS-KCSSLEGLYLNNNSLSGK 60
L +S+N G + P L +L++L L N F GE P LS C +L GL L+ N G
Sbjct: 249 LNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGA 306
Query: 61 IPRWLGNLTRLNHIIMPENHLEGLIP-----------ILDISDNNISGRLPSCTFSNCSS 109
+P + G+ + L + + N+ G +P +LD+S N SG LP + +S
Sbjct: 307 VPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSAS 366
Query: 110 LVTLDLSYNRINGSI-------PEWNIAYIYQGKVLSLLSGLDLSCNKLISHIPPQIGNL 162
L+TLDLS N +G I P+ + +Y L N IPP + N
Sbjct: 367 LLTLDLSSNNFSGPILPNLCQNPKNTLQELY------------LQNNGFTGKIPPTLSNC 414
Query: 163 TRIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLAIFSVAYNN 222
+ + +L+LS N L+G+IPS+ +L + L L N L G+IP +L+ +KTL + +N+
Sbjct: 415 SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFND 474
Query: 223 LSGEIP 228
L+GEIP
Sbjct: 475 LTGEIP 480
Score = 103 bits (256), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 103/322 (31%), Positives = 142/322 (44%), Gaps = 75/322 (23%)
Query: 1 SLVLSNNSLNGHMFPRNFNLTNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGK 60
SL LS N L+G + +L+ LR L+L N GE PQ L +LE L L+ N L+G+
Sbjct: 419 SLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGE 478
Query: 61 IPRWLGNLTRLNHIIMPENHLEGLIP----------ILDISDNNISGRLPSCTFSNCSSL 110
IP L N T LN I + N L G IP IL +S+N+ SG +P+ +C SL
Sbjct: 479 IPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA-ELGDCRSL 537
Query: 111 VTLDLSYNRINGSIPEW------NIA--------YIY------------QGKVLSLLSGL 144
+ LDL+ N NG+IP IA Y+Y G +L
Sbjct: 538 IWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIR 597
Query: 145 DLSCNKLIS-------------HIPPQIGNLTRIETLNLSHNNL---------------- 175
N+L + H P N + L++S+N L
Sbjct: 598 SEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFI 657
Query: 176 --------TGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLAIFSVAYNNLSGEI 227
+GSIP +L+ + LDLS+NKL+G+IP + L L ++ NNLSG I
Sbjct: 658 LNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPI 717
Query: 228 PEWTAQFATFNESSYEGNTFLC 249
PE QF TF + + N LC
Sbjct: 718 PEM-GQFETFPPAKFLNNPGLC 738
Score = 99.8 bits (247), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 82/210 (39%), Positives = 117/210 (55%), Gaps = 21/210 (10%)
Query: 20 LTNLRWLQLDGNHFVGENPQSLSKCS-SLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPE 78
+ L+ L L N F GE P+SL+ S SL L L++N+ SG I L NL + P+
Sbjct: 339 MRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPI---LPNLCQ-----NPK 390
Query: 79 NHLEGLIPILDISDNNISGRLPSCTFSNCSSLVTLDLSYNRINGSIPEWNIAYIYQGKVL 138
N L+ L + +N +G++P T SNCS LV+L LS+N ++G+IP L
Sbjct: 391 NTLQELY----LQNNGFTGKIPP-TLSNCSELVSLHLSFNYLSGTIPS-------SLGSL 438
Query: 139 SLLSGLDLSCNKLISHIPPQIGNLTRIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNK 198
S L L L N L IP ++ + +ETL L N+LTG IPS SN ++ + LSNN+
Sbjct: 439 SKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNR 498
Query: 199 LNGKIPHQLVELKTLAIFSVAYNNLSGEIP 228
L G+IP + L+ LAI ++ N+ SG IP
Sbjct: 499 LTGEIPKWIGRLENLAILKLSNNSFSGNIP 528
Score = 57.8 bits (138), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 76/238 (31%), Positives = 107/238 (44%), Gaps = 36/238 (15%)
Query: 1 SLVLSNNSLNGHM--FPRNFNLTNLRWLQLDGN--HFVGENPQSLSKCSSLEGLYLNNNS 56
SL LS NSL+G + + + L++L + N F G+ L K +SLE L L+ NS
Sbjct: 101 SLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL-KLNSLEVLDLSANS 159
Query: 57 LSGK-IPRWL--GNLTRLNHIIMPENHLEGLIPILDISDNNISGRLPSCTFSNCSSLVTL 113
+SG + W+ L H L IS N ISG + S C +L L
Sbjct: 160 ISGANVVGWVLSDGCGELKH--------------LAISGNKISGDV---DVSRCVNLEFL 202
Query: 114 DLSYNRINGSIPEWNIAYIYQGKVLSLLSGLDLSCNKLISHIPPQIGNLTRIETLNLSHN 173
D+S N + IP + G S L LD+S NKL I T ++ LN+S N
Sbjct: 203 DVSSNNFSTGIP-------FLGDC-SALQHLDISGNKLSGDFSRAISTCTELKLLNISSN 254
Query: 174 NLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLV-ELKTLAIFSVAYNNLSGEIPEW 230
G IP LK ++ L L+ NK G+IP L TL ++ N+ G +P +
Sbjct: 255 QFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPF 310
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 93.6 bits (231), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 79/255 (30%), Positives = 121/255 (47%), Gaps = 47/255 (18%)
Query: 19 NLTNLRWLQLDG-NHFVGENPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMP 77
NL L +L + G N+ VG P +++K + L LY+ + ++SG IP +L + L
Sbjct: 74 NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV----- 128
Query: 78 ENHLEGLIPILDISDNNISGRLPSCTFSNCSSLVTLDLSYNRINGSIPEWNIAYIYQGKV 137
LD S N +SG LP + S+ +LV + NRI+G+IP+ +Y G
Sbjct: 129 ---------TLDFSYNALSGTLPP-SISSLPNLVGITFDGNRISGAIPD---SY---GSF 172
Query: 138 LSLLSGLDLSCNKLISHIPPQIGNLTRIETLNLSHNNLTGSIPSTFSNLKHVES------ 191
L + + +S N+L IPP NL + ++LS N L G F + K+ +
Sbjct: 173 SKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN 231
Query: 192 -----------------LDLSNNKLNGKIPHQLVELKTLAIFSVAYNNLSGEIPEWTAQF 234
LDL NN++ G +P L +LK L +V++NNL GEIP+
Sbjct: 232 SLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNL 290
Query: 235 ATFNESSYEGNTFLC 249
F+ S+Y N LC
Sbjct: 291 QRFDVSAYANNKCLC 305
Score = 57.8 bits (138), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 90/199 (45%), Gaps = 26/199 (13%)
Query: 1 SLVLSNNSLNGHMFPRNFNLTNLRWLQLDGNHFVGENPQSLSKCSSL-EGLYLNNNSLSG 59
+L S N+L+G + P +L NL + DGN G P S S L + ++ N L+G
Sbjct: 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTG 188
Query: 60 KIPRWLGNLTRLNHIIMPENHLEGLIPILDISDNNISGRLPSCTFSNCSSLVTLDLSYNR 119
KIP NL L + + N LEG +L SD N + L+ N
Sbjct: 189 KIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQ---------------KIHLAKNS 232
Query: 120 INGSIPEWNIAYIYQGKVLSLLSGLDLSCNKLISHIPPQIGNLTRIETLNLSHNNLTGSI 179
+ +++ + K L+GLDL N++ +P + L + +LN+S NNL G I
Sbjct: 233 L-----AFDLGKVGLSKN---LNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI 284
Query: 180 PSTFSNLKHVESLDLSNNK 198
P NL+ + +NNK
Sbjct: 285 PQG-GNLQRFDVSAYANNK 302
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 155 IPPQIGNLTRIETLNLSH-NNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTL 213
IP + NL + L + NNL G IP + L + L +++ ++G IP L ++KTL
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 214 AIFSVAYNNLSGEIPEWTAQFATFNESSYEGN 245
+YN LSG +P + +++GN
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGN 159
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 47.4 bits (111), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 62/207 (29%), Positives = 102/207 (49%), Gaps = 36/207 (17%)
Query: 19 NLTNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPE 78
NLT L + ++ N P L+ ++L GL L NN ++ P L NLT LN + +
Sbjct: 83 NLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSS 138
Query: 79 N------HLEGLIPI--LDISDNNISGRLPSCTFSNCSSLVTLDLSYNRINGSIPEWNIA 130
N L GL + L+ S N ++ P +N ++L LD+S N+++
Sbjct: 139 NTISDISALSGLTSLQQLNFSSNQVTDLKP---LANLTTLERLDISSNKVSDI------- 188
Query: 131 YIYQGKVLSLLSGLD--LSCNKLISHIPPQIGNLTRIETLNLSHNNLTGSIPSTFSNLKH 188
VL+ L+ L+ ++ N IS I P +G LT ++ L+L+ N L T ++L +
Sbjct: 189 -----SVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDI--GTLASLTN 240
Query: 189 VESLDLSNNKLNGKIP----HQLVELK 211
+ LDL+NN+++ P +L ELK
Sbjct: 241 LTDLDLANNQISNLAPLSGLTKLTELK 267
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 90/194 (46%), Gaps = 46/194 (23%)
Query: 44 CSSLEGL-YLNN--------NSLSGKIPRWLGNLTRLNHIIMPENHLEGLIPILDISDNN 94
S++G+ YLNN N L+ P L NLT+L I+M N + + P+
Sbjct: 53 IKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPL------- 103
Query: 95 ISGRLPSCTFSNCSSLVTLDLSYNRINGSIPEWNIAYIYQGKVLSLLSGLDLSCNKLISH 154
+N ++L L L N+I P N L+ L+ L+LS N IS
Sbjct: 104 ----------ANLTNLTGLTLFNNQITDIDPLKN---------LTNLNRLELSSNT-ISD 143
Query: 155 IPPQIGNLTRIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNG-KIPHQLVELKTL 213
I G LT ++ LN S N +T P +NL +E LD+S+NK++ + +L L++L
Sbjct: 144 ISALSG-LTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKVSDISVLAKLTNLESL 200
Query: 214 AIFSVAYNNLSGEI 227
+A NN +I
Sbjct: 201 ----IATNNQISDI 210
Score = 35.8 bits (81), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 94/204 (46%), Gaps = 30/204 (14%)
Query: 1 SLVLSNNSLNGHMFPRNFNLTNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGK 60
SL+ +NN + + P LTNL L L+GN ++ +L+ ++L L L NN +S
Sbjct: 199 SLIATNNQI-SDITPLGI-LTNLDELSLNGNQL--KDIGTLASLTNLTDLDLANNQISNL 254
Query: 61 IPRWLGNLTRLNHIIMPENHLEGLIPI--------LDISDNNISGRLPSCTFSNCSSLVT 112
P L LT+L + + N + + P+ L++++N + P SN +L
Sbjct: 255 AP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISP---ISNLKNLTY 309
Query: 113 LDLSYNRINGSIPEWNIAYIYQGKVLSLLSGLDLSCNKLISHIPPQIGNLTRIETLNLSH 172
L L +N NI+ I L+ L L NK +S + + NLT I L+ H
Sbjct: 310 LTLYFN---------NISDISPVSSLTKLQRLFFYNNK-VSDVS-SLANLTNINWLSAGH 358
Query: 173 NNLTGSIPSTFSNLKHVESLDLSN 196
N ++ P +NL + L L++
Sbjct: 359 NQISDLTP--LANLTRITQLGLND 380
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 62/207 (29%), Positives = 101/207 (48%), Gaps = 36/207 (17%)
Query: 19 NLTNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPE 78
NLT L + ++ N P L+ ++L GL L NN ++ P L NLT LN + +
Sbjct: 83 NLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSS 138
Query: 79 N------HLEGLIPI--LDISDNNISGRLPSCTFSNCSSLVTLDLSYNRINGSIPEWNIA 130
N L GL + L S N ++ P +N ++L LD+S N+++
Sbjct: 139 NTISDISALSGLTSLQQLSFSSNQVTDLKP---LANLTTLERLDISSNKVSDI------- 188
Query: 131 YIYQGKVLSLLSGLD--LSCNKLISHIPPQIGNLTRIETLNLSHNNLTGSIPSTFSNLKH 188
VL+ L+ L+ ++ N IS I P +G LT ++ L+L+ N L T ++L +
Sbjct: 189 -----SVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDI--GTLASLTN 240
Query: 189 VESLDLSNNKLNGKIP----HQLVELK 211
+ LDL+NN+++ P +L ELK
Sbjct: 241 LTDLDLANNQISNLAPLSGLTKLTELK 267
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 84/178 (47%), Gaps = 35/178 (19%)
Query: 44 CSSLEGL-YLNN--------NSLSGKIPRWLGNLTRLNHIIMPENHLEGLIPILDIS--- 91
S++G+ YLNN N L+ P L NLT+L I+M N + + P+ +++
Sbjct: 53 IKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLT 110
Query: 92 -----DNNISGRLPSCTFSNCSSLVTLDLSYNRINGSIPEWNIAYIYQGKVLSLLSGLDL 146
+N I+ P N ++L L+LS N I+ I L+ L L
Sbjct: 111 GLTLFNNQITDIDP---LKNLTNLNRLELSSNTISD---------ISALSGLTSLQQLSF 158
Query: 147 SCNKLISHIPPQIGNLTRIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIP 204
S N++ P + NLT +E L++S N + S S + L ++ESL +NN+++ P
Sbjct: 159 SSNQVTDLKP--LANLTTLERLDISSNKV--SDISVLAKLTNLESLIATNNQISDITP 212
Score = 35.4 bits (80), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 94/204 (46%), Gaps = 30/204 (14%)
Query: 1 SLVLSNNSLNGHMFPRNFNLTNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGK 60
SL+ +NN + + P LTNL L L+GN ++ +L+ ++L L L NN +S
Sbjct: 199 SLIATNNQI-SDITPLGI-LTNLDELSLNGNQL--KDIGTLASLTNLTDLDLANNQISNL 254
Query: 61 IPRWLGNLTRLNHIIMPENHLEGLIPI--------LDISDNNISGRLPSCTFSNCSSLVT 112
P L LT+L + + N + + P+ L++++N + P SN +L
Sbjct: 255 AP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISP---ISNLKNLTY 309
Query: 113 LDLSYNRINGSIPEWNIAYIYQGKVLSLLSGLDLSCNKLISHIPPQIGNLTRIETLNLSH 172
L L +N NI+ I L+ L L NK +S + + NLT I L+ H
Sbjct: 310 LTLYFN---------NISDISPVSSLTKLQRLFFYNNK-VSDVS-SLANLTNINWLSAGH 358
Query: 173 NNLTGSIPSTFSNLKHVESLDLSN 196
N ++ P +NL + L L++
Sbjct: 359 NQISDLTP--LANLTRITQLGLND 380
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 62/207 (29%), Positives = 101/207 (48%), Gaps = 36/207 (17%)
Query: 19 NLTNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPE 78
NLT L + ++ N P L+ ++L GL L NN ++ P L NLT LN + +
Sbjct: 83 NLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSS 138
Query: 79 N------HLEGLIPI--LDISDNNISGRLPSCTFSNCSSLVTLDLSYNRINGSIPEWNIA 130
N L GL + L S N ++ P +N ++L LD+S N+++
Sbjct: 139 NTISDISALSGLTSLQQLSFSSNQVTDLKP---LANLTTLERLDISSNKVSDI------- 188
Query: 131 YIYQGKVLSLLSGLD--LSCNKLISHIPPQIGNLTRIETLNLSHNNLTGSIPSTFSNLKH 188
VL+ L+ L+ ++ N IS I P +G LT ++ L+L+ N L T ++L +
Sbjct: 189 -----SVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKD--IGTLASLTN 240
Query: 189 VESLDLSNNKLNGKIP----HQLVELK 211
+ LDL+NN+++ P +L ELK
Sbjct: 241 LTDLDLANNQISNLAPLSGLTKLTELK 267
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 95/204 (46%), Gaps = 30/204 (14%)
Query: 1 SLVLSNNSLNGHMFPRNFNLTNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGK 60
SL+ +NN + + P LTNL L L+GN ++ +L+ ++L L L NN +S
Sbjct: 199 SLIATNNQI-SDITPLGI-LTNLDELSLNGNQL--KDIGTLASLTNLTDLDLANNQISNL 254
Query: 61 IPRWLGNLTRLNHIIMPENHLEGLIPI--------LDISDNNISGRLPSCTFSNCSSLVT 112
P L LT+L + + N + + P+ L++++N + P SN +L
Sbjct: 255 AP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISP---ISNLKNLTY 309
Query: 113 LDLSYNRINGSIPEWNIAYIYQGKVLSLLSGLDLSCNKLISHIPPQIGNLTRIETLNLSH 172
L L +N NI+ I L+ L L S NK +S + + NLT I L+ H
Sbjct: 310 LTLYFN---------NISDISPVSSLTKLQRLFFSNNK-VSDVS-SLANLTNINWLSAGH 358
Query: 173 NNLTGSIPSTFSNLKHVESLDLSN 196
N ++ P +NL + L L++
Sbjct: 359 NQISDLTP--LANLTRITQLGLND 380
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 84/178 (47%), Gaps = 35/178 (19%)
Query: 44 CSSLEGL-YLNN--------NSLSGKIPRWLGNLTRLNHIIMPENHLEGLIPILDIS--- 91
S++G+ YLNN N L+ P L NLT+L I+M N + + P+ +++
Sbjct: 53 IKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLT 110
Query: 92 -----DNNISGRLPSCTFSNCSSLVTLDLSYNRINGSIPEWNIAYIYQGKVLSLLSGLDL 146
+N I+ P N ++L L+LS N I+ I L+ L L
Sbjct: 111 GLTLFNNQITDIDP---LKNLTNLNRLELSSNTISD---------ISALSGLTSLQQLSF 158
Query: 147 SCNKLISHIPPQIGNLTRIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIP 204
S N++ P + NLT +E L++S N + S S + L ++ESL +NN+++ P
Sbjct: 159 SSNQVTDLKP--LANLTTLERLDISSNKV--SDISVLAKLTNLESLIATNNQISDITP 212
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 63/217 (29%), Positives = 96/217 (44%), Gaps = 23/217 (10%)
Query: 19 NLTNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSG---KIPRWLGNL------- 68
NL NL L L N +P + + LE LYL+ N L K+P+ L L
Sbjct: 74 NLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEI 133
Query: 69 TRLNHIIMPENHLEGLIPILDISDNNISGRLPSCTFSNCSSLVTLDLSYNRINGSIPEWN 128
T++ + N L +I ++++ N L S N + LSY RI + N
Sbjct: 134 TKVRKSVF--NGLNQMI-VVELGTN----PLKSSGIENGAFQGMKKLSYIRIA----DTN 182
Query: 129 IAYIYQGKVLSLLSGLDLSCNKLISHIPPQIGNLTRIETLNLSHNNLTGSIPSTFSNLKH 188
I I QG SL + L L NK+ + L + L LS N+++ + +N H
Sbjct: 183 ITTIPQGLPPSL-TELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPH 241
Query: 189 VESLDLSNNKLNGKIPHQLVELKTLAIFSVAYNNLSG 225
+ L L+NNKL K+P L + K + + + NN+S
Sbjct: 242 LRELHLNNNKL-VKVPGGLADHKYIQVVYLHNNNISA 277
Score = 32.0 bits (71), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Query: 144 LDLSCNKLISHIPPQIGNLTRIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLN--- 200
LDL NK+ NL + TL L +N ++ P F+ L +E L LS N+L
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP 116
Query: 201 GKIPHQLVELKT 212
K+P L EL+
Sbjct: 117 EKMPKTLQELRV 128
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 63/217 (29%), Positives = 96/217 (44%), Gaps = 23/217 (10%)
Query: 19 NLTNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSG---KIPRWLGNL------- 68
NL NL L L N +P + + LE LYL+ N L K+P+ L L
Sbjct: 74 NLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEI 133
Query: 69 TRLNHIIMPENHLEGLIPILDISDNNISGRLPSCTFSNCSSLVTLDLSYNRINGSIPEWN 128
T++ + N L +I ++++ N L S N + LSY RI + N
Sbjct: 134 TKVRKSVF--NGLNQMI-VVELGTN----PLKSSGIENGAFQGMKKLSYIRIA----DTN 182
Query: 129 IAYIYQGKVLSLLSGLDLSCNKLISHIPPQIGNLTRIETLNLSHNNLTGSIPSTFSNLKH 188
I I QG SL + L L NK+ + L + L LS N+++ + +N H
Sbjct: 183 ITTIPQGLPPSL-TELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPH 241
Query: 189 VESLDLSNNKLNGKIPHQLVELKTLAIFSVAYNNLSG 225
+ L L+NNKL K+P L + K + + + NN+S
Sbjct: 242 LRELHLNNNKL-VKVPGGLADHKYIQVVYLHNNNISA 277
Score = 32.0 bits (71), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Query: 144 LDLSCNKLISHIPPQIGNLTRIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLN--- 200
LDL NK+ NL + TL L +N ++ P F+ L +E L LS N+L
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP 116
Query: 201 GKIPHQLVELKT 212
K+P L EL+
Sbjct: 117 EKMPKTLQELRV 128
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 61/206 (29%), Positives = 101/206 (49%), Gaps = 35/206 (16%)
Query: 19 NLTNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPE 78
NLT L + ++ N P L+ ++L GL L NN ++ P L NLT LN + +
Sbjct: 88 NLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSS 143
Query: 79 N------HLEGLIPILDIS-DNNISGRLPSCTFSNCSSLVTLDLSYNRINGSIPEWNIAY 131
N L GL + +S N ++ P +N ++L LD+S N+++
Sbjct: 144 NTISDISALSGLTSLQQLSFGNQVTDLKP---LANLTTLERLDISSNKVSDI-------- 192
Query: 132 IYQGKVLSLLSGLD--LSCNKLISHIPPQIGNLTRIETLNLSHNNLTGSIPSTFSNLKHV 189
VL+ L+ L+ ++ N IS I P +G LT ++ L+L+ N L T ++L ++
Sbjct: 193 ----SVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDI--GTLASLTNL 245
Query: 190 ESLDLSNNKLNGKIP----HQLVELK 211
LDL+NN+++ P +L ELK
Sbjct: 246 TDLDLANNQISNLAPLSGLTKLTELK 271
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 86/182 (47%), Gaps = 44/182 (24%)
Query: 44 CSSLEGL-YLNN--------NSLSGKIPRWLGNLTRLNHIIMPENHLEGLIPILDIS--- 91
S++G+ YLNN N L+ P L NLT+L I+M N + + P+ +++
Sbjct: 58 IKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLT 115
Query: 92 -----DNNISGRLPSCTFSNCSSLVTLDLSYNRINGSIPEWNIAYIYQGKVLSLLSGL-- 144
+N I+ P N ++L L+LS N I+ +S LSGL
Sbjct: 116 GLTLFNNQITDIDP---LKNLTNLNRLELSSNTISD---------------ISALSGLTS 157
Query: 145 --DLSCNKLISHIPPQIGNLTRIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGK 202
LS ++ + P + NLT +E L++S N + S S + L ++ESL +NN+++
Sbjct: 158 LQQLSFGNQVTDLKP-LANLTTLERLDISSNKV--SDISVLAKLTNLESLIATNNQISDI 214
Query: 203 IP 204
P
Sbjct: 215 TP 216
Score = 35.8 bits (81), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 94/204 (46%), Gaps = 30/204 (14%)
Query: 1 SLVLSNNSLNGHMFPRNFNLTNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGK 60
SL+ +NN + + P LTNL L L+GN ++ +L+ ++L L L NN +S
Sbjct: 203 SLIATNNQI-SDITPLGI-LTNLDELSLNGNQL--KDIGTLASLTNLTDLDLANNQISNL 258
Query: 61 IPRWLGNLTRLNHIIMPENHLEGLIPI--------LDISDNNISGRLPSCTFSNCSSLVT 112
P L LT+L + + N + + P+ L++++N + P SN +L
Sbjct: 259 AP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISP---ISNLKNLTY 313
Query: 113 LDLSYNRINGSIPEWNIAYIYQGKVLSLLSGLDLSCNKLISHIPPQIGNLTRIETLNLSH 172
L L +N NI+ I L+ L L NK +S + + NLT I L+ H
Sbjct: 314 LTLYFN---------NISDISPVSSLTKLQRLFFYNNK-VSDVS-SLANLTNINWLSAGH 362
Query: 173 NNLTGSIPSTFSNLKHVESLDLSN 196
N ++ P +NL + L L++
Sbjct: 363 NQISDLTP--LANLTRITQLGLND 384
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 61/206 (29%), Positives = 101/206 (49%), Gaps = 35/206 (16%)
Query: 19 NLTNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPE 78
NLT L + ++ N P L+ ++L GL L NN ++ P L NLT LN + +
Sbjct: 87 NLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSS 142
Query: 79 N------HLEGLIPILDIS-DNNISGRLPSCTFSNCSSLVTLDLSYNRINGSIPEWNIAY 131
N L GL + +S N ++ P +N ++L LD+S N+++
Sbjct: 143 NTISDISALSGLTSLQQLSFGNQVTDLKP---LANLTTLERLDISSNKVSDI-------- 191
Query: 132 IYQGKVLSLLSGLD--LSCNKLISHIPPQIGNLTRIETLNLSHNNLTGSIPSTFSNLKHV 189
VL+ L+ L+ ++ N IS I P +G LT ++ L+L+ N L T ++L ++
Sbjct: 192 ----SVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDI--GTLASLTNL 244
Query: 190 ESLDLSNNKLNGKIP----HQLVELK 211
LDL+NN+++ P +L ELK
Sbjct: 245 TDLDLANNQISNLAPLSGLTKLTELK 270
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 95/204 (46%), Gaps = 30/204 (14%)
Query: 1 SLVLSNNSLNGHMFPRNFNLTNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGK 60
SL+ +NN + + P LTNL L L+GN ++ +L+ ++L L L NN +S
Sbjct: 202 SLIATNNQI-SDITPLGI-LTNLDELSLNGNQL--KDIGTLASLTNLTDLDLANNQISNL 257
Query: 61 IPRWLGNLTRLNHIIMPENHLEGLIPI--------LDISDNNISGRLPSCTFSNCSSLVT 112
P L LT+L + + N + + P+ L++++N + P SN +L
Sbjct: 258 AP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISP---ISNLKNLTY 312
Query: 113 LDLSYNRINGSIPEWNIAYIYQGKVLSLLSGLDLSCNKLISHIPPQIGNLTRIETLNLSH 172
L L +N NI+ I L+ L L + NK +S + + NLT I L+ H
Sbjct: 313 LTLYFN---------NISDISPVSSLTKLQRLFFANNK-VSDVS-SLANLTNINWLSAGH 361
Query: 173 NNLTGSIPSTFSNLKHVESLDLSN 196
N ++ P +NL + L L++
Sbjct: 362 NQISDLTP--LANLTRITQLGLND 383
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 86/182 (47%), Gaps = 44/182 (24%)
Query: 44 CSSLEGL-YLNN--------NSLSGKIPRWLGNLTRLNHIIMPENHLEGLIPILDIS--- 91
S++G+ YLNN N L+ P L NLT+L I+M N + + P+ +++
Sbjct: 57 IKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLT 114
Query: 92 -----DNNISGRLPSCTFSNCSSLVTLDLSYNRINGSIPEWNIAYIYQGKVLSLLSGL-- 144
+N I+ P N ++L L+LS N I+ +S LSGL
Sbjct: 115 GLTLFNNQITDIDP---LKNLTNLNRLELSSNTISD---------------ISALSGLTS 156
Query: 145 --DLSCNKLISHIPPQIGNLTRIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGK 202
LS ++ + P + NLT +E L++S N + S S + L ++ESL +NN+++
Sbjct: 157 LQQLSFGNQVTDLKP-LANLTTLERLDISSNKV--SDISVLAKLTNLESLIATNNQISDI 213
Query: 203 IP 204
P
Sbjct: 214 TP 215
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 101/206 (49%), Gaps = 35/206 (16%)
Query: 19 NLTNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPE 78
NLT L + ++ N P L+ ++L GL L NN ++ P L NLT LN + +
Sbjct: 83 NLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSS 138
Query: 79 N------HLEGLIPILDIS-DNNISGRLPSCTFSNCSSLVTLDLSYNRINGSIPEWNIAY 131
N L GL + ++ N ++ P +N ++L LD+S N+++
Sbjct: 139 NTISDISALSGLTSLQQLNFGNQVTDLKP---LANLTTLERLDISSNKVSDI-------- 187
Query: 132 IYQGKVLSLLSGLD--LSCNKLISHIPPQIGNLTRIETLNLSHNNLTGSIPSTFSNLKHV 189
VL+ L+ L+ ++ N IS I P +G LT ++ L+L+ N L T ++L ++
Sbjct: 188 ----SVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDI--GTLASLTNL 240
Query: 190 ESLDLSNNKLNGKIP----HQLVELK 211
LDL+NN+++ P +L ELK
Sbjct: 241 TDLDLANNQISNLAPLSGLTKLTELK 266
Score = 35.8 bits (81), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 94/204 (46%), Gaps = 30/204 (14%)
Query: 1 SLVLSNNSLNGHMFPRNFNLTNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGK 60
SL+ +NN + + P LTNL L L+GN ++ +L+ ++L L L NN +S
Sbjct: 198 SLIATNNQI-SDITPLGI-LTNLDELSLNGNQL--KDIGTLASLTNLTDLDLANNQISNL 253
Query: 61 IPRWLGNLTRLNHIIMPENHLEGLIPI--------LDISDNNISGRLPSCTFSNCSSLVT 112
P L LT+L + + N + + P+ L++++N + P SN +L
Sbjct: 254 AP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISP---ISNLKNLTY 308
Query: 113 LDLSYNRINGSIPEWNIAYIYQGKVLSLLSGLDLSCNKLISHIPPQIGNLTRIETLNLSH 172
L L +N NI+ I L+ L L NK +S + + NLT I L+ H
Sbjct: 309 LTLYFN---------NISDISPVSSLTKLQRLFFYNNK-VSDVS-SLANLTNINWLSAGH 357
Query: 173 NNLTGSIPSTFSNLKHVESLDLSN 196
N ++ P +NL + L L++
Sbjct: 358 NQISDLTP--LANLTRITQLGLND 379
Score = 35.8 bits (81), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 86/182 (47%), Gaps = 44/182 (24%)
Query: 44 CSSLEGL-YLNN--------NSLSGKIPRWLGNLTRLNHIIMPENHLEGLIPILDIS--- 91
S++G+ YLNN N L+ P L NLT+L I+M N + + P+ +++
Sbjct: 53 IKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLT 110
Query: 92 -----DNNISGRLPSCTFSNCSSLVTLDLSYNRINGSIPEWNIAYIYQGKVLSLLSGL-- 144
+N I+ P N ++L L+LS N I+ +S LSGL
Sbjct: 111 GLTLFNNQITDIDP---LKNLTNLNRLELSSNTISD---------------ISALSGLTS 152
Query: 145 --DLSCNKLISHIPPQIGNLTRIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGK 202
L+ ++ + P + NLT +E L++S N + S S + L ++ESL +NN+++
Sbjct: 153 LQQLNFGNQVTDLKP-LANLTTLERLDISSNKV--SDISVLAKLTNLESLIATNNQISDI 209
Query: 203 IP 204
P
Sbjct: 210 TP 211
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 101/206 (49%), Gaps = 35/206 (16%)
Query: 19 NLTNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPE 78
NLT L + ++ N P L+ ++L GL L NN ++ P L NLT LN + +
Sbjct: 83 NLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSS 138
Query: 79 N------HLEGLIPILDIS-DNNISGRLPSCTFSNCSSLVTLDLSYNRINGSIPEWNIAY 131
N L GL + ++ N ++ P +N ++L LD+S N+++
Sbjct: 139 NTISDISALSGLTSLQQLNFGNQVTDLKP---LANLTTLERLDISSNKVSDI-------- 187
Query: 132 IYQGKVLSLLSGLD--LSCNKLISHIPPQIGNLTRIETLNLSHNNLTGSIPSTFSNLKHV 189
VL+ L+ L+ ++ N IS I P +G LT ++ L+L+ N L T ++L ++
Sbjct: 188 ----SVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDI--GTLASLTNL 240
Query: 190 ESLDLSNNKLNGKIP----HQLVELK 211
LDL+NN+++ P +L ELK
Sbjct: 241 TDLDLANNQISNLAPLSGLTKLTELK 266
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 95/204 (46%), Gaps = 30/204 (14%)
Query: 1 SLVLSNNSLNGHMFPRNFNLTNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGK 60
SL+ +NN + + P LTNL L L+GN ++ +L+ ++L L L NN +S
Sbjct: 198 SLIATNNQI-SDITPLGI-LTNLDELSLNGNQL--KDIGTLASLTNLTDLDLANNQISNL 253
Query: 61 IPRWLGNLTRLNHIIMPENHLEGLIPI--------LDISDNNISGRLPSCTFSNCSSLVT 112
P L LT+L + + N + + P+ L++++N + P SN +L
Sbjct: 254 AP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISP---ISNLKNLTY 308
Query: 113 LDLSYNRINGSIPEWNIAYIYQGKVLSLLSGLDLSCNKLISHIPPQIGNLTRIETLNLSH 172
L L +N NI+ I L+ L L S NK +S + + NLT I L+ H
Sbjct: 309 LTLYFN---------NISDISPVSSLTKLQRLFFSNNK-VSDVS-SLANLTNINWLSAGH 357
Query: 173 NNLTGSIPSTFSNLKHVESLDLSN 196
N ++ P +NL + L L++
Sbjct: 358 NQISDLTP--LANLTRITQLGLND 379
Score = 35.4 bits (80), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 86/182 (47%), Gaps = 44/182 (24%)
Query: 44 CSSLEGL-YLNN--------NSLSGKIPRWLGNLTRLNHIIMPENHLEGLIPILDIS--- 91
S++G+ YLNN N L+ P L NLT+L I+M N + + P+ +++
Sbjct: 53 IKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLT 110
Query: 92 -----DNNISGRLPSCTFSNCSSLVTLDLSYNRINGSIPEWNIAYIYQGKVLSLLSGL-- 144
+N I+ P N ++L L+LS N I+ +S LSGL
Sbjct: 111 GLTLFNNQITDIDP---LKNLTNLNRLELSSNTISD---------------ISALSGLTS 152
Query: 145 --DLSCNKLISHIPPQIGNLTRIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGK 202
L+ ++ + P + NLT +E L++S N + S S + L ++ESL +NN+++
Sbjct: 153 LQQLNFGNQVTDLKP-LANLTTLERLDISSNKV--SDISVLAKLTNLESLIATNNQISDI 209
Query: 203 IP 204
P
Sbjct: 210 TP 211
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 59/203 (29%), Positives = 93/203 (45%), Gaps = 30/203 (14%)
Query: 2 LVLSNNSLNGHMFPRNFNLTNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGKI 61
LV+ NN+ G L++L L+LD N F+ + + ++LE L L +L G +
Sbjct: 68 LVIRNNTFRG--------LSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAV 119
Query: 62 PRWLGNLTRLNHIIMPENHLEGLIPILDISDNNISGRLPSCTFSNCSSLVTLDLSYNRIN 121
GN + P LE L+ + DNNI P+ F N LDL++N++
Sbjct: 120 LS--GNFFK------PLTSLEMLV----LRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK 167
Query: 122 GSIPEWNIAYIYQGKVLSLLSGLDLSCNKLISHIP--PQIGNL---TRIETLNLSHNNLT 176
SI E ++ +QGK +LL ++ + + + GN T I TL+LS N
Sbjct: 168 -SICEEDLLN-FQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFK 225
Query: 177 GSIPSTFSNL---KHVESLDLSN 196
S+ F + ++SL LSN
Sbjct: 226 ESMAKRFFDAIAGTKIQSLILSN 248
Score = 32.3 bits (72), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 57/118 (48%), Gaps = 14/118 (11%)
Query: 85 IPILDISDNNISGRLPSCTFSNCSSLVTLDLSYNRINGSIPE---WNIAYIYQGKVLSLL 141
+ D+S + I L S FS+ + L L L+ N IN I + W + ++ +
Sbjct: 277 VKTCDLSKSKIFALLKS-VFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLK------- 327
Query: 142 SGLDLSCNKLISHIPPQIGNLTRIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKL 199
L+LS N L S NL ++E L+LS+N++ +F L +++ L L N+L
Sbjct: 328 --LNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQL 383
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 94/204 (46%), Gaps = 30/204 (14%)
Query: 2 LVLSNNSLNGHMFPRNFNLTNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGKI 61
LV+ NN+ G L++L L+LD N F+ + + ++LE L L +L G +
Sbjct: 68 LVIRNNTFRG--------LSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAV 119
Query: 62 PRWLGNLTRLNHIIMPENHLEGLIPILDISDNNISGRLPSCTFSNCSSLVTLDLSYNRIN 121
GN + P LE L+ + DNNI P+ F N LDL++N++
Sbjct: 120 LS--GNFFK------PLTSLEMLV----LRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK 167
Query: 122 GSIPEWNIAYIYQGKVLSLLSGLDLSCNKLISHIP--PQIGNL---TRIETLNLSHNNLT 176
SI E ++ +QGK +LL ++ + + + GN T I TL+LS N
Sbjct: 168 -SICEEDLLN-FQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFK 225
Query: 177 GSIPSTFSNL---KHVESLDLSNN 197
S+ F + ++SL LSN+
Sbjct: 226 ESMAKRFFDAIAGTKIQSLILSNS 249
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 79/185 (42%), Gaps = 24/185 (12%)
Query: 20 LTNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPEN 79
L N+R+L L GN + +L + ++L L L N L LT L +++ EN
Sbjct: 62 LPNVRYLALGGNKL--HDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVEN 119
Query: 80 HLEGLIPILDISDNNISGRLPSCTFSNCSSLVTLDLSYNRINGSIPEWNIAYIYQGKVLS 139
L+ L P F ++L L+L++N++ S+P+ L+
Sbjct: 120 QLQSL---------------PDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDK------LT 157
Query: 140 LLSGLDLSCNKLISHIPPQIGNLTRIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKL 199
L+ LDLS N+L S LT+++ L L N L F L ++ + L +N
Sbjct: 158 NLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW 217
Query: 200 NGKIP 204
+ P
Sbjct: 218 DCTCP 222
Score = 30.4 bits (67), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 162 LTRIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNG---KIPHQLVELKTLAIFS 217
LT + LNL+HN L F L ++ LDLS N+L + +L +LK L ++
Sbjct: 132 LTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQ 190
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 59/235 (25%), Positives = 101/235 (42%), Gaps = 62/235 (26%)
Query: 20 LTNLRWLQLDGNH----------------FVGENP----QSLSKCSSLEGLYLNNNSLSG 59
LTNL +L L+GN ++G N +L ++L LYLN +++S
Sbjct: 65 LTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISD 124
Query: 60 KIPRWLGNLTRLNHIIMPENH-LEGLIPI--------LDISDNNISGRLPSCTFSNCSSL 110
P L NLT+ + + NH L L P+ L ++++ + P +N + L
Sbjct: 125 ISP--LANLTKXYSLNLGANHNLSDLSPLSNXTGLNYLTVTESKVKDVTP---IANLTDL 179
Query: 111 VTLDLSYNRINGSIP-------EWNIAYIYQGKVLSLLSGLDLSCNKLISHIPPQIGNLT 163
+L L+YN+I P + AY+ Q I+ I P + N T
Sbjct: 180 YSLSLNYNQIEDISPLASLTSLHYFTAYVNQ-----------------ITDITP-VANXT 221
Query: 164 RIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNG-KIPHQLVELKTLAIFS 217
R+ +L + +N +T P +NL + L++ N+++ L +LK L + S
Sbjct: 222 RLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDINAVKDLTKLKXLNVGS 274
Score = 36.2 bits (82), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 46/108 (42%), Gaps = 26/108 (24%)
Query: 19 NLTNLRWLQLDGNHF----------------VGENPQS----LSKCSSLEGLYLNNNSLS 58
NL+ L WL++ N VG N S L+ S L L+LNNN L
Sbjct: 241 NLSQLTWLEIGTNQISDINAVKDLTKLKXLNVGSNQISDISVLNNLSQLNSLFLNNNQLG 300
Query: 59 GKIPRWLGNLTRLNHIIMPENHLEGLIPILDISDNNISGRLPSCTFSN 106
+ +G LT L + + +NH+ + P+ +S + S F+N
Sbjct: 301 NEDXEVIGGLTNLTTLFLSQNHITDIRPLASLS------KXDSADFAN 342
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 75/176 (42%), Gaps = 22/176 (12%)
Query: 42 SKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPENHLEGLIPI------------LD 89
SK S L +NN L+ + G+LT L +I+ N L+ L I LD
Sbjct: 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLD 380
Query: 90 ISDNNISGRLPSCTFSNCSSLVTLDLSYNRINGSIPEWNIAYIYQGKVLSLLSGLDLSCN 149
IS N++S S SL++L++S N + +I I KV LDL N
Sbjct: 381 ISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRI---KV------LDLHSN 431
Query: 150 KLISHIPPQIGNLTRIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPH 205
K I IP Q+ L ++ LN++ N L F L ++ + L N + P
Sbjct: 432 K-IKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 486
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 35/65 (53%)
Query: 159 IGNLTRIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLAIFSV 218
I +L+++ L +SHN + S F + +E LDLS+NKL H V LK L +
Sbjct: 41 ILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCHPTVNLKHLDLSFN 100
Query: 219 AYNNL 223
A++ L
Sbjct: 101 AFDAL 105
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 84/189 (44%), Gaps = 31/189 (16%)
Query: 45 SSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPENHLEGLIPILDISDNNISGRLPSCTF 104
+ + L L +N LS + LT+L + + +N L+ LP+ F
Sbjct: 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ---------------TLPAGIF 81
Query: 105 SNCSSLVTLDLSYNRINGSIPEWNIAYIYQGKVLSLLSGLDLSCNKLISHIPPQIGNLTR 164
+L TL ++ N++ ++P I Q L L+ L L N+L S P +LT+
Sbjct: 82 KELKNLETLWVTDNKLQ-ALP---IGVFDQ---LVNLAELRLDRNQLKSLPPRVFDSLTK 134
Query: 165 IETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPH----QLVELKTLAIFSVAY 220
+ L+L +N L F L ++ L L NN+L ++P +L ELKTL +
Sbjct: 135 LTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKL----D 189
Query: 221 NNLSGEIPE 229
NN +PE
Sbjct: 190 NNQLKRVPE 198
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 73/187 (39%), Gaps = 18/187 (9%)
Query: 21 TNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPENH 80
+ + L L N ++ + + L LYLN+N L L L + + +N
Sbjct: 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK 96
Query: 81 LEGL-IPILD--------ISDNNISGRLPSCTFSNCSSLVTLDLSYNRINGSIPEWNIAY 131
L+ L I + D D N LP F + + L L L YN + S+P+
Sbjct: 97 LQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDK 155
Query: 132 IYQGKVLSLLSGLDLSCNKLISHIPP-QIGNLTRIETLNLSHNNLTGSIPSTFSNLKHVE 190
+ K L L N + +P LT ++TL L +N L F +L+ ++
Sbjct: 156 LTSLKELRLY-------NNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLK 208
Query: 191 SLDLSNN 197
L L N
Sbjct: 209 MLQLQEN 215
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 71/161 (44%), Gaps = 30/161 (18%)
Query: 45 SSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPENHLEGLIPILDISDNNISGRLPSCTF 104
SS L N + + + L RL +I+ N L+ + ++
Sbjct: 353 SSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMT------------- 399
Query: 105 SNCSSLVTLDLSYNRINGSIPEWNIAYIYQGKVLSL----LSGLDLSCNKLISHIPPQIG 160
N SSL TLD+S N +N + A+ VL+L L+G C +PP
Sbjct: 400 KNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRC------LPP--- 450
Query: 161 NLTRIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNG 201
+++ L+L HNN SIP ++L+ ++ L++++N+L
Sbjct: 451 ---KVKVLDL-HNNRIMSIPKDVTHLQALQELNVASNQLKS 487
Score = 27.3 bits (59), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 28/58 (48%)
Query: 143 GLDLSCNKLISHIPPQIGNLTRIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLN 200
L LS N + P I L+ + L LSHN + F + +E LD+S+N+L
Sbjct: 56 ALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ 113
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 66/131 (50%), Gaps = 13/131 (9%)
Query: 70 RLNHIIMPENHLEGLIPILDISDNNISGRLPSCTFSNCSSLVTLDLSYNRINGSIPEWNI 129
+L HI P++ L I +L+++ N + RLP F+ S L LD +N I+ PE
Sbjct: 15 KLTHI--PDD-LPSNITVLNLTHNQLR-RLPPTNFTRYSQLAILDAGFNSISKLEPEL-- 68
Query: 130 AYIYQGKVLSLLSGLDLSCNKLISHIPPQIGNL-TRIETLNLSHNNLTGSIPSTFSNLKH 188
++L LL L+L N+L S I Q T + L+L N++ + F N K+
Sbjct: 69 -----CQILPLLKVLNLQHNEL-SQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKN 122
Query: 189 VESLDLSNNKL 199
+ LDLS+N L
Sbjct: 123 LIKLDLSHNGL 133
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 70/144 (48%), Gaps = 19/144 (13%)
Query: 88 LDISDNNISGRLPSCTFSNCSSLVTLDLSYNRINGSI--PEW----NIAYIYQGKVLSLL 141
L+++ N+IS ++ + TFS L LDL N I + EW NI IY LS
Sbjct: 386 LNLTKNHIS-KIANGTFSWLGQLRILDLGLNEIEQKLSGQEWRGLRNIFEIY----LSYN 440
Query: 142 SGLDLSCNKLISHIPPQIGNLTRIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNG 201
L LS + + +L R+ ++ N+ S PS F L+++ LDLSNN +
Sbjct: 441 KYLQLSTSSF-----ALVPSLQRLMLRRVALKNVDIS-PSPFRPLRNLTILDLSNNNI-A 493
Query: 202 KIPHQLVE-LKTLAIFSVAYNNLS 224
I L+E L+ L I +NNL+
Sbjct: 494 NINEDLLEGLENLEILDFQHNNLA 517
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 62/127 (48%), Gaps = 12/127 (9%)
Query: 108 SSLVTLDLSYNRINGSIPEWNIAYIYQGKVLSLLSGLDLSCNKLISHIPPQIG---NLTR 164
SSL LDLS N + P + GK+ +LL L+ +L H+ ++ + T
Sbjct: 171 SSLRKLDLSSNPLKEFSPG---CFQTIGKLFALL----LNNAQLNPHLTEKLCWELSNTS 223
Query: 165 IETLNLSHNNLTGSIPSTFSNLK--HVESLDLSNNKLNGKIPHQLVELKTLAIFSVAYNN 222
I+ L+L++N L + STFS LK ++ LDLS N L+ L +L S+ YNN
Sbjct: 224 IQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNN 283
Query: 223 LSGEIPE 229
+ P
Sbjct: 284 IQRLSPR 290
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 77/214 (35%), Gaps = 41/214 (19%)
Query: 45 SSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPENHLEGLIPI----------LDISDNN 94
+ L+ L L L G +P + L L +++ NH + L I L I N
Sbjct: 275 TQLQELDLTATHLKG-LPSGMKGLNLLKKLVLSVNHFDQLCQISAANFPSLTHLYIRGNV 333
Query: 95 ISGRLPSCTFSNCSSLVTLDLSYNRINGSIPEWNIAYIYQGKVLSLLSGLDLSCNKLISH 154
L +L TLDLS+N I S C L
Sbjct: 334 KKLHLGVGCLEKLGNLQTLDLSHNDIEAS-----------------------DCCSL--- 367
Query: 155 IPPQIGNLTRIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVE-LKTL 213
Q+ NL+ ++TLNLSHN G F +E LDL+ +L+ P + L L
Sbjct: 368 ---QLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLHINAPQSPFQNLHFL 424
Query: 214 AIFSVAYNNLSGEIPEWTAQFATFNESSYEGNTF 247
+ ++ Y L A + +GN F
Sbjct: 425 QVLNLTYCFLDTSNQHLLAGLPVLRHLNLKGNHF 458
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 64/293 (21%), Positives = 116/293 (39%), Gaps = 63/293 (21%)
Query: 1 SLVLSNNSLNGHMFPRNFNLTNLRWLQLDGN--HFVG-ENPQSLSKCSSLEGLYLNNNSL 57
SL L +N ++ FP++F NL+ L N H++ E+ +SL + +L L N N++
Sbjct: 130 SLYLGSNHISSIKFPKDFPARNLKVLDFQNNAIHYISREDMRSLEQAINL-SLNFNGNNV 188
Query: 58 SG---------------------------------KIPRWLGNLTRLNHIIMPENHLEGL 84
G WLG ++ + L+GL
Sbjct: 189 KGIELGAFDSTIFQSLNFGGTPNLSVIFNGLQNSTTQSLWLGTFEDIDDEDISSAMLKGL 248
Query: 85 IPI----LDISDNNISGRLPSCTFSNCSSLVTLDLSYNRINGSIPEWNIAYIYQGKVLSL 140
+ L++ ++ S + S TF + L LDL+ + G +P K++
Sbjct: 249 CEMSVESLNLQEHRFSD-ISSTTFQCFTQLQELDLTATHLKG-LPSGMKGLNLLKKLVLS 306
Query: 141 LSGLDLSCNKLISHIPPQI-----GNLTR-------------IETLNLSHNNLTGSIPST 182
++ D C ++ P GN+ + ++TL+LSHN++ S +
Sbjct: 307 VNHFDQLCQISAANFPSLTHLYIRGNVKKLHLGVGCLEKLGNLQTLDLSHNDIEASDCCS 366
Query: 183 FS--NLKHVESLDLSNNKLNGKIPHQLVELKTLAIFSVAYNNLSGEIPEWTAQ 233
NL H+++L+LS+N+ G E L + +A+ L P+ Q
Sbjct: 367 LQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLHINAPQSPFQ 419
Score = 30.8 bits (68), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 94/215 (43%), Gaps = 39/215 (18%)
Query: 19 NLTNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPE 78
NL++L+ L L N +G Q+ +C LE L L TRL HI P+
Sbjct: 371 NLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLA--------------FTRL-HINAPQ 415
Query: 79 NHLEGL---------IPILDISDNNISGRLPSCTFSNCSSLVTLDLSYNRI-NGSIPEWN 128
+ + L LD S+ ++ LP L L+L N +G+I + N
Sbjct: 416 SPFQNLHFLQVLNLTYCFLDTSNQHLLAGLPV--------LRHLNLKGNHFQDGTITKTN 467
Query: 129 IAYIYQGKVLSLLSGLDLSCNKLISHIPPQIGNLTRIETLNLSHNNLTGSIPSTFSNLKH 188
+ + + L L LS L+S +L ++ ++LSHN+LT + S+LK
Sbjct: 468 LL-----QTVGSLEVLILSSCGLLSIDQQAFHSLGKMSHVDLSHNSLTCDSIDSLSHLKG 522
Query: 189 VESLDLSNNKLNGKIPHQLVELKTLAIFSVAYNNL 223
+ L+L+ N +N P L L + ++++N L
Sbjct: 523 I-YLNLAANSINIISPRLLPILSQQSTINLSHNPL 556
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 68/151 (45%), Gaps = 22/151 (14%)
Query: 99 LPSCTFSNCSSLVTLDLSYNRINGSIPEWNIAYIYQGKVLSLL-SGLDLSCNKLISHIPP 157
L + F C L LDL++ R+ + ++ KVL+L S LD+S +L +P
Sbjct: 391 LKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPA 450
Query: 158 --------------------QIGNLTRIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNN 197
+ L R+E L LS +L+ F++LK + +DLS+N
Sbjct: 451 LQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHN 510
Query: 198 KLNGKIPHQLVELKTLAIFSVAYNNLSGEIP 228
+L L LK + + ++A N++S +P
Sbjct: 511 RLTSSSIEALSHLKGIYL-NLASNHISIILP 540
Score = 30.4 bits (67), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 63/168 (37%), Gaps = 40/168 (23%)
Query: 45 SSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPENHLEGLIPI----------LDISDNN 94
S L+ L L LS ++P L L+ L +++ N E L I L I N
Sbjct: 278 SGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNT 336
Query: 95 ISGRLPSCTFSNCSSLVTLDLSYNRINGSIPEWNIAYIYQGKVLSLLSGLDLSCNKLISH 154
L + N +L LDLS++ I S C L
Sbjct: 337 KRLELGTGCLENLENLRELDLSHDDIETS-----------------------DCCNL--- 370
Query: 155 IPPQIGNLTRIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGK 202
Q+ NL+ +++LNLS+N F +E LDL+ +L K
Sbjct: 371 ---QLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVK 415
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 53/209 (25%), Positives = 96/209 (45%), Gaps = 29/209 (13%)
Query: 19 NLTNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPE 78
+L +L LQL NH + + ++L L L +N L+ L++L + +
Sbjct: 86 HLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRN 145
Query: 79 NHLEGLIPILDISDNNISGRLPSCTFSNCSSLVTLDLSYNRINGSIPEWNIAYIYQGKV- 137
N +E + PS F+ SL LDL + ++YI +G
Sbjct: 146 NPIESI---------------PSYAFNRIPSLRRLDLGELK--------RLSYISEGAFE 182
Query: 138 -LSLLSGLDLS-CNKLISHIPPQIGNLTRIETLNLSHNNLTGSIPSTFSNLKHVESLDLS 195
LS L L+L+ CN + IP + L +++ L+LS N+L+ P +F L H++ L +
Sbjct: 183 GLSNLRYLNLAMCN--LREIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMI 239
Query: 196 NNKLNGKIPHQLVELKTLAIFSVAYNNLS 224
+++ + L++L ++A+NNL+
Sbjct: 240 QSQIQVIERNAFDNLQSLVEINLAHNNLT 268
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 83/194 (42%), Gaps = 25/194 (12%)
Query: 20 LTNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSG-------KIPRW----LGNL 68
L NL L+L N + S L+ L+L NN + +IP LG L
Sbjct: 111 LANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGEL 170
Query: 69 TRLNHIIMPENHLEGL--IPILDISDNNISGRLPSCTFSNCSSLVTLDLSYNRINGSIPE 126
RL++I E EGL + L+++ N+ +P+ T L LDLS N ++ P
Sbjct: 171 KRLSYI--SEGAFEGLSNLRYLNLAMCNLR-EIPNLT--PLIKLDELDLSGNHLSAIRPG 225
Query: 127 WNIAYIYQGKVLSLLSGLDLSCNKLISHIPPQIGNLTRIETLNLSHNNLTGSIPSTFSNL 186
++ K+ + S + + NL + +NL+HNNLT F+ L
Sbjct: 226 SFQGLMHLQKLWMIQSQIQVIERN-------AFDNLQSLVEINLAHNNLTLLPHDLFTPL 278
Query: 187 KHVESLDLSNNKLN 200
H+E + L +N N
Sbjct: 279 HHLERIHLHHNPWN 292
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 35/56 (62%), Gaps = 7/56 (12%)
Query: 159 IGNLTRIETLNLSHNNLTG-SIPSTFSNLKHVESLDLSNNKLNG------KIPHQL 207
IG+L ++ LN++HN + +P FSNL ++E LDLS+NK+ ++ HQ+
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 60/232 (25%), Positives = 100/232 (43%), Gaps = 25/232 (10%)
Query: 19 NLTNLRWLQL--DGNHFVGENPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIM 76
+L +L +L L +G F G QS +SL+ L L+ N + +LG L +L H+
Sbjct: 345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLG-LEQLEHLDF 403
Query: 77 PENHLEGL-----------IPILDISDNNISGRLPSCTFSNCSSLVTLDLSYNRINGSIP 125
++L+ + + LDIS + F+ SSL L ++ N S
Sbjct: 404 QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG-IFNGLSSLEVLKMAGN----SFQ 458
Query: 126 EWNIAYIYQGKVLSLLSGLDLSCNKLISHIPPQIGNLTRIETLNLSHNNLTGSIPSTFSN 185
E + I+ L L+ LDLS +L P +L+ ++ LN+SHNN +
Sbjct: 459 ENFLPDIFTE--LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKC 516
Query: 186 LKHVESLDLSNNKLNGKIPHQLVELKTLAIFSVAYNNLSGEIPEWTAQFATF 237
L ++ LD S N + +L + S+A+ NL+ T + +F
Sbjct: 517 LNSLQVLDYSLNHIMTSKKQELQHFPS----SLAFLNLTQNDFACTCEHQSF 564
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 35/56 (62%), Gaps = 7/56 (12%)
Query: 159 IGNLTRIETLNLSHNNLTG-SIPSTFSNLKHVESLDLSNNKLNG------KIPHQL 207
IG+L ++ LN++HN + +P FSNL ++E LDLS+NK+ ++ HQ+
Sbjct: 144 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 199
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 4/97 (4%)
Query: 141 LSGLDLSCNKLISHIPPQIGNLTRIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLN 200
L+ LDLS +L P +L+ ++ LN+SHNN + L ++ LD S N +
Sbjct: 496 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 555
Query: 201 GKIPHQLVELKTLAIFSVAYNNLSGEIPEWTAQFATF 237
+L + S+A+ NL+ T + +F
Sbjct: 556 TSKKQELQHFPS----SLAFLNLTQNDFACTCEHQSF 588
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 58/117 (49%), Gaps = 8/117 (6%)
Query: 85 IPILDISDNNISGRLPSCTFSNCSSLVTLDLSYNRINGSIPEWNIAYIYQGKVLSLLSGL 144
I +L+++ N + RLP+ F+ S L +LD+ +N I+ PE + L +L L
Sbjct: 32 ITVLNLTHNQLR-RLPAANFTRYSQLTSLDVGFNTISKLEPEL-------CQKLPMLKVL 83
Query: 145 DLSCNKLISHIPPQIGNLTRIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNG 201
+L N+L T + L+L N++ + F K++ +LDLS+N L+
Sbjct: 84 NLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSS 140
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 67/144 (46%), Gaps = 17/144 (11%)
Query: 87 ILDISDNNISGRLPSCTFSNCSSLVTLDLSYNRINGSI--PEW----NIAYIYQGKVLSL 140
IL+++ N IS ++ S FS L LDL N I + EW NI IY LS
Sbjct: 390 ILNLTKNKIS-KIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIY----LSY 444
Query: 141 LSGLDLSCNKLISHIPPQIGNLTRIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLN 200
L L+ N + +L R+ ++ N+ S PS F L+++ LDLSNN +
Sbjct: 445 NKYLQLTRNSF-----ALVPSLQRLMLRRVALKNVDSS-PSPFQPLRNLTILDLSNNNIA 498
Query: 201 GKIPHQLVELKTLAIFSVAYNNLS 224
L L+ L I + +NNL+
Sbjct: 499 NINDDMLEGLEKLEILDLQHNNLA 522
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 36.6 bits (83), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 35/56 (62%), Gaps = 7/56 (12%)
Query: 159 IGNLTRIETLNLSHNNLTG-SIPSTFSNLKHVESLDLSNNKLNG------KIPHQL 207
IG+L ++ LN++HN + +P FSNL ++E LDLS+NK+ ++ HQ+
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 36.6 bits (83), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 58/117 (49%), Gaps = 8/117 (6%)
Query: 85 IPILDISDNNISGRLPSCTFSNCSSLVTLDLSYNRINGSIPEWNIAYIYQGKVLSLLSGL 144
I +L+++ N + RLP+ F+ S L +LD+ +N I+ PE + L +L L
Sbjct: 27 ITVLNLTHNQLR-RLPAANFTRYSQLTSLDVGFNTISKLEPEL-------CQKLPMLKVL 78
Query: 145 DLSCNKLISHIPPQIGNLTRIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNG 201
+L N+L T + L+L N++ + F K++ +LDLS+N L+
Sbjct: 79 NLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSS 135
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 67/144 (46%), Gaps = 17/144 (11%)
Query: 87 ILDISDNNISGRLPSCTFSNCSSLVTLDLSYNRINGSI--PEW----NIAYIYQGKVLSL 140
IL+++ N IS ++ S FS L LDL N I + EW NI IY LS
Sbjct: 385 ILNLTKNKIS-KIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIY----LSY 439
Query: 141 LSGLDLSCNKLISHIPPQIGNLTRIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLN 200
L L+ N + +L R+ ++ N+ S PS F L+++ LDLSNN +
Sbjct: 440 NKYLQLTRNSF-----ALVPSLQRLMLRRVALKNVDSS-PSPFQPLRNLTILDLSNNNIA 493
Query: 201 GKIPHQLVELKTLAIFSVAYNNLS 224
L L+ L I + +NNL+
Sbjct: 494 NINDDMLEGLEKLEILDLQHNNLA 517
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 36.6 bits (83), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 70/141 (49%), Gaps = 14/141 (9%)
Query: 92 DNNISGRLPSCTFSNCSSLVTLDLSYNRINGSIPEWNIAYIYQGKVLSLLSGLDLSCNKL 151
D N L + F + + L TL L+ N++ S+P ++ Q L L L N+L
Sbjct: 67 DYNQLQTLSAGVFDDLTELGTLGLANNQL-ASLPLGVFDHLTQ------LDKLYLGGNQL 119
Query: 152 ISHIPPQIGNLTRIETLNLSHNNLTGSIPS-TFSNLKHVESLDLSNNKLNGKIPH----Q 206
S LT+++ L L+ N L SIP+ F L ++++L LS N+L +PH +
Sbjct: 120 KSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGAFDR 177
Query: 207 LVELKTLAIFSVAYNNLSGEI 227
L +L+T+ +F ++ EI
Sbjct: 178 LGKLQTITLFGNQFDCSRCEI 198
Score = 31.6 bits (70), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 64/142 (45%), Gaps = 15/142 (10%)
Query: 20 LTNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPEN 79
LT L WL LD N + + L L L NN L+ +LT+L+ + + N
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN 117
Query: 80 HLEGL----------IPILDISDNNISGRLPSCTFSNCSSLVTLDLSYNRINGSIPEWNI 129
L+ L + L ++ N + +P+ F ++L TL LS N++ S+P
Sbjct: 118 QLKSLPSGVFDRLTKLKELRLNTNQLQS-IPAGAFDKLTNLQTLSLSTNQLQ-SVPHG-- 173
Query: 130 AYIYQGKVLSL-LSGLDLSCNK 150
A+ GK+ ++ L G C++
Sbjct: 174 AFDRLGKLQTITLFGNQFDCSR 195
Score = 28.1 bits (61), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 27/56 (48%)
Query: 144 LDLSCNKLISHIPPQIGNLTRIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKL 199
LDL L + LT++ LNL +N L F +L + +L L+NN+L
Sbjct: 40 LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL 95
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 36.6 bits (83), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 58/117 (49%), Gaps = 8/117 (6%)
Query: 85 IPILDISDNNISGRLPSCTFSNCSSLVTLDLSYNRINGSIPEWNIAYIYQGKVLSLLSGL 144
I +L+++ N + RLP+ F+ S L +LD+ +N I+ PE + L +L L
Sbjct: 37 ITVLNLTHNQLR-RLPAANFTRYSQLTSLDVGFNTISKLEPEL-------CQKLPMLKVL 88
Query: 145 DLSCNKLISHIPPQIGNLTRIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNG 201
+L N+L T + L+L N++ + F K++ +LDLS+N L+
Sbjct: 89 NLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSS 145
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 67/144 (46%), Gaps = 17/144 (11%)
Query: 87 ILDISDNNISGRLPSCTFSNCSSLVTLDLSYNRINGSI--PEW----NIAYIYQGKVLSL 140
IL+++ N IS ++ S FS L LDL N I + EW NI IY LS
Sbjct: 395 ILNLTKNKIS-KIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIY----LSY 449
Query: 141 LSGLDLSCNKLISHIPPQIGNLTRIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLN 200
L L+ N + +L R+ ++ N+ S PS F L+++ LDLSNN +
Sbjct: 450 NKYLQLTRNSF-----ALVPSLQRLMLRRVALKNVDSS-PSPFQPLRNLTILDLSNNNIA 503
Query: 201 GKIPHQLVELKTLAIFSVAYNNLS 224
L L+ L I + +NNL+
Sbjct: 504 NINDDMLEGLEKLEILDLQHNNLA 527
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 54/111 (48%), Gaps = 15/111 (13%)
Query: 90 ISDNNISGRLPSCTFSNCSSLVTLDLSYNRINGSIPEWNIAYIYQGKVLSLLSGLDLSCN 149
IS + + GRLP LV L+L N++ G P ++G S + L L N
Sbjct: 44 ISSDGLFGRLPH--------LVKLELKRNQLTGIEPN-----AFEGA--SHIQELQLGEN 88
Query: 150 KLISHIPPQIGNLTRIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLN 200
K+ L +++TLNL N ++ +P +F +L + SL+L++N N
Sbjct: 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139
Score = 33.9 bits (76), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 6/73 (8%)
Query: 159 IGNLTRIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNK---LNGKIPHQLVELKTLAI 215
G L + L L N LTG P+ F H++ L L NK ++ K+ L +LKTL +
Sbjct: 50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109
Query: 216 FSVAYNNLSGEIP 228
+ N +S +P
Sbjct: 110 YD---NQISCVMP 119
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 36.6 bits (83), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 35/56 (62%), Gaps = 7/56 (12%)
Query: 159 IGNLTRIETLNLSHNNLTG-SIPSTFSNLKHVESLDLSNNKLNG------KIPHQL 207
IG+L ++ LN++HN + +P FSNL ++E LDLS+NK+ ++ HQ+
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 177
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 36.6 bits (83), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 35/56 (62%), Gaps = 7/56 (12%)
Query: 159 IGNLTRIETLNLSHNNLTG-SIPSTFSNLKHVESLDLSNNKLNG------KIPHQL 207
IG+L ++ LN++HN + +P FSNL ++E LDLS+NK+ ++ HQ+
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 36.6 bits (83), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 35/56 (62%), Gaps = 7/56 (12%)
Query: 159 IGNLTRIETLNLSHNNLTG-SIPSTFSNLKHVESLDLSNNKLNG------KIPHQL 207
IG+L ++ LN++HN + +P FSNL ++E LDLS+NK+ ++ HQ+
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 176
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 36.2 bits (82), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 35/56 (62%), Gaps = 7/56 (12%)
Query: 159 IGNLTRIETLNLSHNNLTG-SIPSTFSNLKHVESLDLSNNKLNG------KIPHQL 207
IG+L ++ LN++HN + +P FSNL ++E LDLS+NK+ ++ HQ+
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 176
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 36.2 bits (82), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 35/56 (62%), Gaps = 7/56 (12%)
Query: 159 IGNLTRIETLNLSHNNLTG-SIPSTFSNLKHVESLDLSNNKLNG------KIPHQL 207
IG+L ++ LN++HN + +P FSNL ++E LDLS+NK+ ++ HQ+
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 177
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 36.2 bits (82), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 86/200 (43%), Gaps = 24/200 (12%)
Query: 47 LEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPENHLEGLIP-------ILDISDNNISGRL 99
L L L NN +S + L +L + + +NHL + P L I DN I ++
Sbjct: 80 LYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELRIHDNRIR-KV 138
Query: 100 PSCTFSNCSSLVTLDLSYNRINGSIPE--------WNIAYIYQGKVLSL-------LSGL 144
P FS ++ +++ N + S E N I + K+ + L+ L
Sbjct: 139 PKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNEL 198
Query: 145 DLSCNKLISHIPPQIGNLTRIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIP 204
L NK+ + + +++ L L HN + + S L + L L NNKL+ ++P
Sbjct: 199 HLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVP 257
Query: 205 HQLVELKTLAIFSVAYNNLS 224
L +LK L + + NN++
Sbjct: 258 AGLPDLKLLQVVYLHTNNIT 277
Score = 26.9 bits (58), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 4/84 (4%)
Query: 146 LSCNKL-ISHIPPQIGNLTRIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIP 204
+ C+ L + +P +I T + L+L +N+++ F L+H+ +L L NNK++
Sbjct: 38 VQCSDLGLKAVPKEISPDTTL--LDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHE 95
Query: 205 HQLVELKTLAIFSVAYNNLSGEIP 228
L+ L ++ N+L EIP
Sbjct: 96 KAFSPLRKLQKLYISKNHLV-EIP 118
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 36.2 bits (82), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 68/135 (50%), Gaps = 14/135 (10%)
Query: 92 DNNISGRLPSCTFSNCSSLVTLDLSYNRINGSIPEWNIAYIYQGKVLSLLSGLDLSCNKL 151
D N L + F + + L TL L+ N++ S+P ++ Q L L L N+L
Sbjct: 67 DYNQLQTLSAGVFDDLTELGTLGLANNQL-ASLPLGVFDHLTQ------LDKLYLGGNQL 119
Query: 152 ISHIPPQIGNLTRIETLNLSHNNLTGSIPS-TFSNLKHVESLDLSNNKLNGKIPH----Q 206
S LT+++ L L+ N L SIP+ F L ++++L LS N+L +PH +
Sbjct: 120 KSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGAFDR 177
Query: 207 LVELKTLAIFSVAYN 221
L +L+T+ +F ++
Sbjct: 178 LGKLQTITLFGNQFD 192
Score = 31.2 bits (69), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 64/142 (45%), Gaps = 15/142 (10%)
Query: 20 LTNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPEN 79
LT L WL LD N + + L L L NN L+ +LT+L+ + + N
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN 117
Query: 80 HLEGL----------IPILDISDNNISGRLPSCTFSNCSSLVTLDLSYNRINGSIPEWNI 129
L+ L + L ++ N + +P+ F ++L TL LS N++ S+P
Sbjct: 118 QLKSLPSGVFDRLTKLKELRLNTNQLQS-IPAGAFDKLTNLQTLSLSTNQLQ-SVPHG-- 173
Query: 130 AYIYQGKVLSL-LSGLDLSCNK 150
A+ GK+ ++ L G C++
Sbjct: 174 AFDRLGKLQTITLFGNQFDCSR 195
Score = 28.1 bits (61), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 27/56 (48%)
Query: 144 LDLSCNKLISHIPPQIGNLTRIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKL 199
LDL L + LT++ LNL +N L F +L + +L L+NN+L
Sbjct: 40 LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL 95
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 36.2 bits (82), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 85/194 (43%), Gaps = 19/194 (9%)
Query: 19 NLTNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPE 78
N + L+WL L ++ L L L N + P LT L +++ E
Sbjct: 54 NFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVE 113
Query: 79 NHLEGL--IPI--------LDISDNNI-SGRLPSCTFSNCSSLVTLDLSYNRINGSIPEW 127
L L PI L+++ N I S +LP+ FSN ++LV +DLSYN I +I
Sbjct: 114 TKLASLESFPIGQLITLKKLNVAHNFIHSCKLPA-YFSNLTNLVHVDLSYNYIQ-TITVN 171
Query: 128 NIAYIYQGKVLSLLSGLDLSCNKLISHIPPQIGNLTRIETLNLSHN-NLTGSIPSTFSNL 186
++ ++ + ++L LD+S N I I Q ++ L L N N + + + NL
Sbjct: 172 DLQFLRENPQVNL--SLDMSLNP-IDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNL 228
Query: 187 K--HVESLDLSNNK 198
HV L L K
Sbjct: 229 AGLHVHRLILGEFK 242
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 6/87 (6%)
Query: 141 LSGLDLSCNKLISHIPPQIGNLTRIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKL- 199
L+ LDLS +L L R++ LN+SHNNL S ++ L + +LD S N++
Sbjct: 475 LTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE 534
Query: 200 --NGKIPHQLVELKTLAIFSVAYNNLS 224
G + H K+LA F++ N+++
Sbjct: 535 TSKGILQH---FPKSLAFFNLTNNSVA 558
Score = 27.3 bits (59), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 51/117 (43%), Gaps = 18/117 (15%)
Query: 99 LPSCTFSNCSSLVTLDLSYNRING-SIPEWN--------------IAYIYQGKV--LSLL 141
L S +FSN S L LDLS I W+ I G L+ L
Sbjct: 47 LKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSL 106
Query: 142 SGLDLSCNKLISHIPPQIGNLTRIETLNLSHNNL-TGSIPSTFSNLKHVESLDLSNN 197
L KL S IG L ++ LN++HN + + +P+ FSNL ++ +DLS N
Sbjct: 107 ENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN 163
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 35.8 bits (81), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 85/194 (43%), Gaps = 19/194 (9%)
Query: 19 NLTNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPE 78
N + L+WL L ++ L L L N + P LT L +++ E
Sbjct: 49 NFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVE 108
Query: 79 NHLEGL--IPI--------LDISDNNI-SGRLPSCTFSNCSSLVTLDLSYNRINGSIPEW 127
L L PI L+++ N I S +LP+ FSN ++LV +DLSYN I +I
Sbjct: 109 TKLASLESFPIGQLITLKKLNVAHNFIHSCKLPA-YFSNLTNLVHVDLSYNYIQ-TITVN 166
Query: 128 NIAYIYQGKVLSLLSGLDLSCNKLISHIPPQIGNLTRIETLNLSHN-NLTGSIPSTFSNL 186
++ ++ + ++L LD+S N I I Q ++ L L N N + + + NL
Sbjct: 167 DLQFLRENPQVNL--SLDMSLNP-IDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNL 223
Query: 187 K--HVESLDLSNNK 198
HV L L K
Sbjct: 224 AGLHVHRLILGEFK 237
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 6/87 (6%)
Query: 141 LSGLDLSCNKLISHIPPQIGNLTRIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKL- 199
L+ LDLS +L L R++ LN+SHNNL S ++ L + +LD S N++
Sbjct: 470 LTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE 529
Query: 200 --NGKIPHQLVELKTLAIFSVAYNNLS 224
G + H K+LA F++ N+++
Sbjct: 530 TSKGILQH---FPKSLAFFNLTNNSVA 553
Score = 27.3 bits (59), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 51/117 (43%), Gaps = 18/117 (15%)
Query: 99 LPSCTFSNCSSLVTLDLSYNRING-SIPEWN--------------IAYIYQGKV--LSLL 141
L S +FSN S L LDLS I W+ I G L+ L
Sbjct: 42 LKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSL 101
Query: 142 SGLDLSCNKLISHIPPQIGNLTRIETLNLSHNNL-TGSIPSTFSNLKHVESLDLSNN 197
L KL S IG L ++ LN++HN + + +P+ FSNL ++ +DLS N
Sbjct: 102 ENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN 158
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 35.8 bits (81), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 77/178 (43%), Gaps = 24/178 (13%)
Query: 20 LTNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPEN 79
L N+R+L L GN + +L + ++L L L N L LT L +++ EN
Sbjct: 62 LPNVRYLALGGNKL--HDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVEN 119
Query: 80 HLEGLIPILDISDNNISGRLPSCTFSNCSSLVTLDLSYNRINGSIPEWNIAYIYQGKVLS 139
L+ L P F ++L L L +N++ S+P+ ++ L+
Sbjct: 120 QLQSL---------------PDGVFDKLTNLTYLYLYHNQLQ-SLPKG----VFDK--LT 157
Query: 140 LLSGLDLSCNKLISHIPPQIGNLTRIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNN 197
L+ LDL N+L S LT+++ L+L+ N L F L + + L NN
Sbjct: 158 NLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSVPDGVFDRLTSLTHIWLLNN 215
Score = 26.9 bits (58), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 162 LTRIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNG---KIPHQLVELKTLAI 215
LT + L L HN L F L ++ LDL NN+L + +L +LK L++
Sbjct: 132 LTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSL 188
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 35.0 bits (79), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 58/127 (45%), Gaps = 17/127 (13%)
Query: 75 IMPENHLEGL-IPILDISDNNISGRLPSCTFSNCSSLVTLDLSYNRINGSIPEWNIAYIY 133
+MP L L + +++ + G LP L TLDLS+N++ S+P
Sbjct: 51 LMPYTRLTQLNLDRCELTKLQVDGTLPV--------LGTLDLSHNQLQ-SLP-------L 94
Query: 134 QGKVLSLLSGLDLSCNKLISHIPPQIGNLTRIETLNLSHNNLTGSIPSTFSNLKHVESLD 193
G+ L L+ LD+S N+L S + L ++ L L N L P + +E L
Sbjct: 95 LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS 154
Query: 194 LSNNKLN 200
L+NN+L
Sbjct: 155 LANNQLT 161
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 34.7 bits (78), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 58/127 (45%), Gaps = 17/127 (13%)
Query: 75 IMPENHLEGL-IPILDISDNNISGRLPSCTFSNCSSLVTLDLSYNRINGSIPEWNIAYIY 133
+MP L L + +++ + G LP L TLDLS+N++ S+P
Sbjct: 51 LMPYTRLTQLNLDRCELTKLQVDGTLPV--------LGTLDLSHNQLQ-SLP-------L 94
Query: 134 QGKVLSLLSGLDLSCNKLISHIPPQIGNLTRIETLNLSHNNLTGSIPSTFSNLKHVESLD 193
G+ L L+ LD+S N+L S + L ++ L L N L P + +E L
Sbjct: 95 LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS 154
Query: 194 LSNNKLN 200
L+NN+L
Sbjct: 155 LANNQLT 161
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 34.7 bits (78), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 155 IPPQIGNLTRIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLA 214
+P ++ N + ++LS+N ++ +FSN+ + +L LS N+L P LK+L
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105
Query: 215 IFSVAYNNLSGEIPE 229
+ S+ N++S +PE
Sbjct: 106 LLSLHGNDIS-VVPE 119
Score = 31.6 bits (70), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 41/83 (49%)
Query: 141 LSGLDLSCNKLISHIPPQIGNLTRIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLN 200
L+ +DLS N++ + N+T++ TL LS+N L P TF LK + L L N ++
Sbjct: 56 LTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS 115
Query: 201 GKIPHQLVELKTLAIFSVAYNNL 223
+L L+ ++ N L
Sbjct: 116 VVPEGAFNDLSALSHLAIGANPL 138
Score = 30.4 bits (67), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 17/91 (18%)
Query: 50 LYLNNNSLSGKIPRWLGNLTRLNHIIMPENHLEGLIPILDISDNNISGRLPSCTFSNCSS 109
LYL+ N + +P+ L N L ++D+S+N IS L + +FSN +
Sbjct: 36 LYLDGNQFT-LVPKELSNYKHLT--------------LIDLSNNRIS-TLSNQSFSNMTQ 79
Query: 110 LVTLDLSYNRINGSIPEWNIAYIYQGKVLSL 140
L+TL LSYNR+ IP + ++LSL
Sbjct: 80 LLTLILSYNRLR-CIPPRTFDGLKSLRLLSL 109
Score = 27.3 bits (59), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 49/103 (47%), Gaps = 12/103 (11%)
Query: 26 LQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPENHLEGLI 85
L LDGN F P+ LS L + L+NN +S + N+T+L +I+ N L +
Sbjct: 36 LYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIP 94
Query: 86 P----------ILDISDNNISGRLPSCTFSNCSSLVTLDLSYN 118
P +L + N+IS +P F++ S+L L + N
Sbjct: 95 PRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGAN 136
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 34.7 bits (78), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 58/126 (46%), Gaps = 17/126 (13%)
Query: 75 IMPENHLEGL-IPILDISDNNISGRLPSCTFSNCSSLVTLDLSYNRINGSIPEWNIAYIY 133
+MP L L + +++ + G LP L TLDLS+N++ S+P
Sbjct: 51 LMPYTRLTQLNLDRCELTKLQVDGTLPV--------LGTLDLSHNQLQ-SLP-------L 94
Query: 134 QGKVLSLLSGLDLSCNKLISHIPPQIGNLTRIETLNLSHNNLTGSIPSTFSNLKHVESLD 193
G+ L L+ LD+S N+L S + L ++ L L N L P + +E L
Sbjct: 95 LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS 154
Query: 194 LSNNKL 199
L+NN+L
Sbjct: 155 LANNQL 160
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 34.7 bits (78), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 58/126 (46%), Gaps = 17/126 (13%)
Query: 75 IMPENHLEGL-IPILDISDNNISGRLPSCTFSNCSSLVTLDLSYNRINGSIPEWNIAYIY 133
+MP L L + +++ + G LP L TLDLS+N++ S+P
Sbjct: 51 LMPYTRLTQLNLDRCELTKLQVDGTLPV--------LGTLDLSHNQLQ-SLP-------L 94
Query: 134 QGKVLSLLSGLDLSCNKLISHIPPQIGNLTRIETLNLSHNNLTGSIPSTFSNLKHVESLD 193
G+ L L+ LD+S N+L S + L ++ L L N L P + +E L
Sbjct: 95 LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS 154
Query: 194 LSNNKL 199
L+NN+L
Sbjct: 155 LANNQL 160
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 33.9 bits (76), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 74/167 (44%), Gaps = 29/167 (17%)
Query: 81 LEGLIPILDISDNNISGRLPSCTFSNCSSLVTLDLSYNRIN-----GSIPEWNIAYIYQG 135
L +LD+S NN+S T + ++L +L LS+N +N +P N+ Y
Sbjct: 37 LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRY---- 92
Query: 136 KVLSLLSGLDLSCNKLISHIPPQIGNLTRIETLNLSHNNLTGSIPSTFSNLKHVESLDLS 195
LDLS N L + +L +E L L +N++ + F ++ ++ L LS
Sbjct: 93 --------LDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLS 144
Query: 196 NNKLNGKIPHQLV----ELKTLAIFSVAYNNLSG-------EIPEWT 231
N++ + P +L+ +L L + ++ N L ++P W
Sbjct: 145 QNQI-SRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWV 190
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 57/134 (42%), Gaps = 19/134 (14%)
Query: 1 SLVLSNNSLNGHMFPRNFNLTNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGK 60
SL+LS+N LN + NLR+L L NH + S +LE L L NN +
Sbjct: 68 SLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVV 127
Query: 61 IPRWLGNLTRLNHIIMPENHLEGLIPILDISDNNISGRLPSCTFSNCSSLVTLDLSYNRI 120
++ +L + + +N + P+ I D N +LP L+ LDLS N++
Sbjct: 128 DRNAFEDMAQLQKLYLSQNQISR-FPVELIKDGN---KLP--------KLMLLDLSSNKL 175
Query: 121 NG-------SIPEW 127
+P W
Sbjct: 176 KKLPLTDLQKLPAW 189
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 33.9 bits (76), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 85/192 (44%), Gaps = 27/192 (14%)
Query: 20 LTNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGKIPRW------------LGN 67
L +L L+L N Q+ S L L+L NN + IP + LG
Sbjct: 82 LPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIES-IPSYAFNRVPSLRRLDLGE 140
Query: 68 LTRLNHIIMPENHLEGLIPI--LDISDNNISGRLPSCTFSNCSSLVTLDLSYNRINGSIP 125
L RL +I E EGL+ + L++ N+ +P+ T L L+LS NR++ P
Sbjct: 141 LKRLEYI--SEAAFEGLVNLRYLNLGMCNLKD-IPNLT--ALVRLEELELSGNRLDLIRP 195
Query: 126 EWNIAYIYQGKVLSLLSGLDLSCNKLISHIPPQIGNLTRIETLNLSHNNLTGSIPSTFSN 185
+QG L+ L L L ++ + +L +E LNLSHNNL F+
Sbjct: 196 G-----SFQG--LTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTP 248
Query: 186 LKHVESLDLSNN 197
L +E + L++N
Sbjct: 249 LHRLERVHLNHN 260
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 55/131 (41%), Gaps = 17/131 (12%)
Query: 93 NNISGRLPSCTFSNCSSLVTLDLSYNRINGSIPEW------NIAYIYQG----------K 136
NN +PS F+ SL LDL + I E N+ Y+ G
Sbjct: 116 NNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIPNLT 175
Query: 137 VLSLLSGLDLSCNKLISHIPPQIGNLTRIETLNLSHNNLTGSIPSTFSNLKHVESLDLSN 196
L L L+LS N+L P LT + L L H + + F +LK +E L+LS+
Sbjct: 176 ALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSH 235
Query: 197 NKLNGKIPHQL 207
N L +PH L
Sbjct: 236 NNLMS-LPHDL 245
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 33.5 bits (75), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 57/126 (45%), Gaps = 17/126 (13%)
Query: 75 IMPENHLEGL-IPILDISDNNISGRLPSCTFSNCSSLVTLDLSYNRINGSIPEWNIAYIY 133
+MP L L + +++ + G LP L TLDLS+N++ S+P
Sbjct: 51 LMPYTRLTQLNLDRCELTKLQVDGTLPV--------LGTLDLSHNQLQ-SLP-------L 94
Query: 134 QGKVLSLLSGLDLSCNKLISHIPPQIGNLTRIETLNLSHNNLTGSIPSTFSNLKHVESLD 193
G+ L L+ LD+S N+L S + L ++ L L N L P + +E L
Sbjct: 95 LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS 154
Query: 194 LSNNKL 199
L+NN L
Sbjct: 155 LANNDL 160
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 57/126 (45%), Gaps = 17/126 (13%)
Query: 75 IMPENHLEGL-IPILDISDNNISGRLPSCTFSNCSSLVTLDLSYNRINGSIPEWNIAYIY 133
+MP L L + +++ + G LP L TLDLS+N++ S+P
Sbjct: 51 LMPYTRLTQLNLDRCELTKLQVDGTLPV--------LGTLDLSHNQLQ-SLP-------L 94
Query: 134 QGKVLSLLSGLDLSCNKLISHIPPQIGNLTRIETLNLSHNNLTGSIPSTFSNLKHVESLD 193
G+ L L+ LD+S N+L S + L ++ L L N L P + +E L
Sbjct: 95 LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS 154
Query: 194 LSNNKL 199
L+NN L
Sbjct: 155 LANNNL 160
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 6/78 (7%)
Query: 164 RIETLNLSHNNL-TGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLAIFSVAYNN 222
+I+ + + +NNL T + ++ K + L+ N+L GK+P E+K LA ++AYN
Sbjct: 306 KIQIIYIGYNNLKTFPVETSLQKXKKLGXLECLYNQLEGKLPAFGSEIK-LASLNLAYNQ 364
Query: 223 LSGEIPEWTAQFATFNES 240
++ EIP A F F E
Sbjct: 365 IT-EIP---ANFCGFTEQ 378
Score = 31.2 bits (69), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 43/71 (60%), Gaps = 7/71 (9%)
Query: 157 PQIGNLTRIETLNLSHNNLTGSIPSTFSNL-KHVESLDLSNNKLNGKIPHQLVELKTLAI 215
P G+ ++ +LNL++N +T IP+ F + VE+L ++NKL IP+ + + K++++
Sbjct: 347 PAFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPN-IFDAKSVSV 403
Query: 216 FSV---AYNNL 223
S +YN +
Sbjct: 404 XSAIDFSYNEI 414
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 56/118 (47%), Gaps = 13/118 (11%)
Query: 85 IPILDISDNNISGRLPSCTFSNCSSLVTLDLSYNRINGSIPEWNIAYIYQGKVLSLLSGL 144
I I+ I NN+ + L L+ YN++ G +P + G + L S L
Sbjct: 307 IQIIYIGYNNLKTFPVETSLQKXKKLGXLECLYNQLEGKLPAF-------GSEIKLAS-L 358
Query: 145 DLSCNKLISHIPPQIGNLT-RIETLNLSHNNLTGSIPSTF--SNLKHVESLDLSNNKL 199
+L+ N+ I+ IP T ++E L+ +HN L IP+ F ++ ++D S N++
Sbjct: 359 NLAYNQ-ITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVXSAIDFSYNEI 414
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 60/138 (43%), Gaps = 28/138 (20%)
Query: 93 NNISGRLPSCTFSNCSSLVTLDLSYNRI---------------NGSIPEWNIAYI---YQ 134
N + G+LP+ F + L +L+L+YN+I N S + YI +
Sbjct: 340 NQLEGKLPA--FGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFD 397
Query: 135 GKVLSLLSGLDLSCNKL-------ISHIPPQIGNLTRIETLNLSHNNLTGSIPSTFSNLK 187
K +S+ S +D S N++ + P + ++NLS+N ++ FS
Sbjct: 398 AKSVSVXSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGS 457
Query: 188 HVESLDLSNNKLNGKIPH 205
+ S++L N L +IP
Sbjct: 458 PLSSINLXGNXLT-EIPK 474
Score = 27.7 bits (60), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 20/82 (24%)
Query: 16 RNFNLTNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHII 75
+ F + N R Q GN + E P+ ++ C SL L + +N ++ ++N I
Sbjct: 539 KGFGIRNQRDAQ--GNRTLREWPEGITLCPSLTQLQIGSN-----------DIRKVNEKI 585
Query: 76 MPENHLEGLIPILDISDN-NIS 96
P I +LDI DN NIS
Sbjct: 586 TPN------ISVLDIKDNPNIS 601
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 57/126 (45%), Gaps = 17/126 (13%)
Query: 75 IMPENHLEGL-IPILDISDNNISGRLPSCTFSNCSSLVTLDLSYNRINGSIPEWNIAYIY 133
+MP L L + +++ + G LP L TLDLS+N++ S+P
Sbjct: 51 LMPYTRLTQLNLDRAELTKLQVDGTLPV--------LGTLDLSHNQLQ-SLP-------L 94
Query: 134 QGKVLSLLSGLDLSCNKLISHIPPQIGNLTRIETLNLSHNNLTGSIPSTFSNLKHVESLD 193
G+ L L+ LD+S N+L S + L ++ L L N L P + +E L
Sbjct: 95 LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS 154
Query: 194 LSNNKL 199
L+NN L
Sbjct: 155 LANNNL 160
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 57/126 (45%), Gaps = 17/126 (13%)
Query: 75 IMPENHLEGL-IPILDISDNNISGRLPSCTFSNCSSLVTLDLSYNRINGSIPEWNIAYIY 133
+MP L L + +++ + G LP L TLDLS+N++ S+P
Sbjct: 52 LMPYTRLTQLNLDRCELTKLQVDGTLPV--------LGTLDLSHNQLQ-SLP-------L 95
Query: 134 QGKVLSLLSGLDLSCNKLISHIPPQIGNLTRIETLNLSHNNLTGSIPSTFSNLKHVESLD 193
G+ L L+ LD+S N+L S + L ++ L L N L P + +E L
Sbjct: 96 LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS 155
Query: 194 LSNNKL 199
L+NN L
Sbjct: 156 LANNNL 161
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 62/169 (36%), Gaps = 11/169 (6%)
Query: 83 GLIPILDISDNNISGRLPSCTFSNCSSLVTLDLSYNRINGSIPEWNIAYIYQG-KVLSLL 141
L+ LD+SDN + TF L TL L + P +++G L L
Sbjct: 79 ALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPG-----LFRGLAALQYL 133
Query: 142 SGLDLSCNKLISHIPPQIGNLTRIETLNLSHNNLTGSIPS-TFSNLKHVESLDLSNNKLN 200
D + L +GNLT + H N S+P F L ++ L L N++
Sbjct: 134 YLQDNALQALPDDTFRDLGNLTHL----FLHGNRISSVPERAFRGLHSLDRLLLHQNRVA 189
Query: 201 GKIPHQLVELKTLAIFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLC 249
PH +L L + NNLS E A N ++C
Sbjct: 190 HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC 238
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 76/198 (38%), Gaps = 47/198 (23%)
Query: 1 SLVLSNNSLNGHMFPRNFN-LTNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSG 59
L LS+N+ + P F+ L L L LD P ++L+ LYL +N+L
Sbjct: 83 QLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA 142
Query: 60 KIPRWLGNLTRLNHIIMPENHLEGLIPILDISDNNISGRLPSCTFSNCSSLVTLDLSYNR 119
LP TF + +L L L NR
Sbjct: 143 ---------------------------------------LPDDTFRDLGNLTHLFLHGNR 163
Query: 120 INGSIPEWNIAYIYQGKVLSLLSGLDLSCNKLISHIPPQIGNLTRIETLNLSHNNLTGSI 179
I+ S+PE ++G L L L L N++ P +L R+ TL L NNL+
Sbjct: 164 IS-SVPE----RAFRG--LHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP 216
Query: 180 PSTFSNLKHVESLDLSNN 197
+ L+ ++ L L++N
Sbjct: 217 TEALAPLRALQYLRLNDN 234
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 62/169 (36%), Gaps = 11/169 (6%)
Query: 83 GLIPILDISDNNISGRLPSCTFSNCSSLVTLDLSYNRINGSIPEWNIAYIYQG-KVLSLL 141
L+ LD+SDN + TF L TL L + P +++G L L
Sbjct: 80 ALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPG-----LFRGLAALQYL 134
Query: 142 SGLDLSCNKLISHIPPQIGNLTRIETLNLSHNNLTGSIPS-TFSNLKHVESLDLSNNKLN 200
D + L +GNLT + H N S+P F L ++ L L N++
Sbjct: 135 YLQDNALQALPDDTFRDLGNLTHL----FLHGNRISSVPERAFRGLHSLDRLLLHQNRVA 190
Query: 201 GKIPHQLVELKTLAIFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLC 249
PH +L L + NNLS E A N ++C
Sbjct: 191 HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC 239
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 76/198 (38%), Gaps = 47/198 (23%)
Query: 1 SLVLSNNSLNGHMFPRNFN-LTNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSG 59
L LS+N+ + P F+ L L L LD P ++L+ LYL +N+L
Sbjct: 84 QLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA 143
Query: 60 KIPRWLGNLTRLNHIIMPENHLEGLIPILDISDNNISGRLPSCTFSNCSSLVTLDLSYNR 119
LP TF + +L L L NR
Sbjct: 144 ---------------------------------------LPDDTFRDLGNLTHLFLHGNR 164
Query: 120 INGSIPEWNIAYIYQGKVLSLLSGLDLSCNKLISHIPPQIGNLTRIETLNLSHNNLTGSI 179
I+ S+PE ++G L L L L N++ P +L R+ TL L NNL+
Sbjct: 165 IS-SVPE----RAFRG--LHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP 217
Query: 180 PSTFSNLKHVESLDLSNN 197
+ L+ ++ L L++N
Sbjct: 218 TEALAPLRALQYLRLNDN 235
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 57/126 (45%), Gaps = 17/126 (13%)
Query: 75 IMPENHLEGL-IPILDISDNNISGRLPSCTFSNCSSLVTLDLSYNRINGSIPEWNIAYIY 133
+MP L L + +++ + G LP L TLDLS+N++ S+P
Sbjct: 51 LMPYTRLTQLNLDRAELTKLQVDGTLPV--------LGTLDLSHNQLQ-SLP-------L 94
Query: 134 QGKVLSLLSGLDLSCNKLISHIPPQIGNLTRIETLNLSHNNLTGSIPSTFSNLKHVESLD 193
G+ L L+ LD+S N+L S + L ++ L L N L P + +E L
Sbjct: 95 LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS 154
Query: 194 LSNNKL 199
L+NN L
Sbjct: 155 LANNNL 160
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 57/126 (45%), Gaps = 17/126 (13%)
Query: 75 IMPENHLEGL-IPILDISDNNISGRLPSCTFSNCSSLVTLDLSYNRINGSIPEWNIAYIY 133
+MP L L + +++ + G LP L TLDLS+N++ S+P
Sbjct: 51 LMPYTRLTQLNLDRAELTKLQVDGTLPV--------LGTLDLSHNQLQ-SLP-------L 94
Query: 134 QGKVLSLLSGLDLSCNKLISHIPPQIGNLTRIETLNLSHNNLTGSIPSTFSNLKHVESLD 193
G+ L L+ LD+S N+L S + L ++ L L N L P + +E L
Sbjct: 95 LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS 154
Query: 194 LSNNKL 199
L+NN L
Sbjct: 155 LANNNL 160
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 85/195 (43%), Gaps = 33/195 (16%)
Query: 20 LTNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGKIPRW------------LGN 67
L +L L+L N Q+ S L L+L NN + IP + LG
Sbjct: 82 LPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIES-IPSYAFNRVPSLRRLDLGE 140
Query: 68 LTRLNHIIMPENHLEGLIPI--LDISDNNISGRLPSCTFSNCSSLVTLD---LSYNRING 122
L RL +I E EGL+ + L++ N+ N ++LV L+ LS NR++
Sbjct: 141 LKRLEYI--SEAAFEGLVNLRYLNLGMCNLKD------IPNLTALVRLEELELSGNRLDL 192
Query: 123 SIPEWNIAYIYQGKVLSLLSGLDLSCNKLISHIPPQIGNLTRIETLNLSHNNLTGSIPST 182
P +QG L+ L L L ++ + +L +E LNLSHNNL
Sbjct: 193 IRPG-----SFQG--LTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDL 245
Query: 183 FSNLKHVESLDLSNN 197
F+ L +E + L++N
Sbjct: 246 FTPLHRLERVHLNHN 260
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 55/131 (41%), Gaps = 17/131 (12%)
Query: 93 NNISGRLPSCTFSNCSSLVTLDLSYNRINGSIPEW------NIAYIYQG----------K 136
NN +PS F+ SL LDL + I E N+ Y+ G
Sbjct: 116 NNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIPNLT 175
Query: 137 VLSLLSGLDLSCNKLISHIPPQIGNLTRIETLNLSHNNLTGSIPSTFSNLKHVESLDLSN 196
L L L+LS N+L P LT + L L H + + F +LK +E L+LS+
Sbjct: 176 ALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSH 235
Query: 197 NKLNGKIPHQL 207
N L +PH L
Sbjct: 236 NNLMS-LPHDL 245
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 75/199 (37%), Gaps = 25/199 (12%)
Query: 28 LDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPENHLEGLIPI 87
L GN S C +L L+L++N+L+G LT L+
Sbjct: 38 LHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLT--------------LLEQ 83
Query: 88 LDISDNNISGRLPSCTFSNCSSLVTLDLSYNRINGSIPEWNIAYIYQG-KVLSLLSGLDL 146
LD+SDN + TF L TL L + P +++G L L D
Sbjct: 84 LDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQELGPG-----LFRGLAALQYLYLQDN 138
Query: 147 SCNKLISHIPPQIGNLTRIETLNLSHNNLTGSIPS-TFSNLKHVESLDLSNNKLNGKIPH 205
+ L + +GNLT + H N S+P F L ++ L L N + PH
Sbjct: 139 NLQALPDNTFRDLGNLTHL----FLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPH 194
Query: 206 QLVELKTLAIFSVAYNNLS 224
+L L + NNLS
Sbjct: 195 AFRDLGRLMTLYLFANNLS 213
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 32.3 bits (72), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 68/146 (46%), Gaps = 12/146 (8%)
Query: 80 HLEGLIPILDISDNNISGRLPSCTFSNCSSLVTLDLSYNRINGSIPEWNIAYIYQGKVLS 139
HLE L ++++N +S P F+N +L TL L NR+ IP ++ G LS
Sbjct: 57 HLEEL----ELNENIVSAVEPG-AFNNLFNLRTLGLRSNRLK-LIP----LGVFTG--LS 104
Query: 140 LLSGLDLSCNKLISHIPPQIGNLTRIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKL 199
L+ LD+S NK++ + +L +++L + N+L FS L +E L L L
Sbjct: 105 NLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNL 164
Query: 200 NGKIPHQLVELKTLAIFSVAYNNLSG 225
L L L + + + N++
Sbjct: 165 TSIPTEALSHLHGLIVLRLRHLNINA 190
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 67/146 (45%), Gaps = 23/146 (15%)
Query: 99 LPSCTFSNCSSLVTLDLSYNRINGSIPEWNIAYIYQGKVLSL-------------LSGLD 145
+P+ S+ L+ L L + IN +I +++ +Y+ KVL + L GL+
Sbjct: 167 IPTEALSHLHGLIVLRLRHLNIN-AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLN 225
Query: 146 LS------CNKLISHIPP-QIGNLTRIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNK 198
L+ CN ++ +P + +L + LNLS+N ++ S L ++ + L +
Sbjct: 226 LTSLSITHCN--LTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQ 283
Query: 199 LNGKIPHQLVELKTLAIFSVAYNNLS 224
L P+ L L + +V+ N L+
Sbjct: 284 LAVVEPYAFRGLNYLRVLNVSGNQLT 309
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 31/57 (54%)
Query: 144 LDLSCNKLISHIPPQIGNLTRIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLN 200
LDL N++ + + + +E L L+ N ++ P F+NL ++ +L L +N+L
Sbjct: 37 LDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK 93
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 32.0 bits (71), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 48/104 (46%), Gaps = 19/104 (18%)
Query: 20 LTNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPEN 79
L L L++ GNHF P S SSL+ L++ N+ +S ++ N
Sbjct: 217 LVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS----------------LIERN 260
Query: 80 HLEGLIPI--LDISDNNISGRLPSCTFSNCSSLVTLDLSYNRIN 121
+GL + L+++ NN+S LP F+ LV L L +N N
Sbjct: 261 AFDGLASLVELNLAHNNLSS-LPHDLFTPLRYLVELHLHHNPWN 303
Score = 27.3 bits (59), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 152 ISHIPPQIGNLTRIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKL 199
+S +P I + TR LNL NN+ TF +L H+E L L N +
Sbjct: 66 LSEVPQGIPSNTRY--LNLMENNIQMIQADTFRHLHHLEVLQLGRNSI 111
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 32.0 bits (71), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 7/101 (6%)
Query: 99 LPSCTFSNCSSLVTLDLSYNRINGSIPEWNIAYIYQGKVLSLLSGLDLSCNKLISHIPPQ 158
L S F L L+L+YN+IN E + G L L L+LS N L
Sbjct: 281 LNSRVFETLKDLKVLNLAYNKINKIADE-----AFYG--LDNLQVLNLSYNLLGELYSSN 333
Query: 159 IGNLTRIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKL 199
L ++ ++L N++ TF L+ +++LDL +N L
Sbjct: 334 FYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNAL 374
Score = 31.6 bits (70), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 69/175 (39%), Gaps = 27/175 (15%)
Query: 19 NLTNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGKIPR--WLGNLTRLNHIIM 76
NL NLR L L + +P + L L L LS + + + NL L
Sbjct: 71 NLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTR--- 127
Query: 77 PENHLEGLIPILDISDNNISGRLPSCTFSNCSSLVTLDLSYNRINGSIPEWNIAYIYQGK 136
LD+S N I +F +SL ++D S N+I + E + + QGK
Sbjct: 128 -----------LDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQI-FLVCEHELEPL-QGK 174
Query: 137 VLSLLSGLDLSCNKLISHIPPQIGNLTR------IETLNLSHNNLTGSIPSTFSN 185
LS S L+ N L S + G +E L++S N T I FSN
Sbjct: 175 TLSFFS---LAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSN 226
Score = 30.4 bits (67), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 66/237 (27%), Positives = 96/237 (40%), Gaps = 41/237 (17%)
Query: 11 GHMFPRNF-NLTNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSG-----KIPRW 64
G ++ NF L + ++ L NH Q+ L+ L L +N+L+ IP
Sbjct: 327 GELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDI 386
Query: 65 LGNLTRL----------NHIIMPENHLEGL--------IPILDISDNNISGRLPSC---- 102
+ +L N I + EN LE L +P L I N R SC
Sbjct: 387 FLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILN-QNRFSSCSGDQ 445
Query: 103 TFSNCSSLVTLDLSYNRINGSIPEWNIAYIYQGKVLSLLSGLDLSCNKLISHIPPQIGNL 162
T S SL L L N + + +++G LS L L L+ N L S P +L
Sbjct: 446 TPSENPSLEQLFLGENMLQLAWETELCWDVFEG--LSHLQVLYLNHNYLNSLPPGVFSHL 503
Query: 163 TRIETLNLSHNNLT----GSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLAI 215
T + L+L+ N LT +P+ ++E LD+S N+L P V L L I
Sbjct: 504 TALRGLSLNSNRLTVLSHNDLPA------NLEILDISRNQLLAPNPDVFVSLSVLDI 554
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 165 IETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLAIFSVAYNNLS 224
+ L+LSH + F LK ++ L+L+ NK+N L L + +++Y NL
Sbjct: 268 VRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSY-NLL 326
Query: 225 GEI 227
GE+
Sbjct: 327 GEL 329
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 12/84 (14%)
Query: 45 SSLEGLYLNNNSLSGKIPRWLGNLTRLNHI--------IMPENHLEGLIPILDISDNNIS 96
S L+ LYLN+N L+ P +LT L + ++ N L + ILDIS N +
Sbjct: 480 SHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEILDISRNQLL 539
Query: 97 GRLPSCTFSNCSSLVTLDLSYNRI 120
P SL LD+++N+
Sbjct: 540 APNPDVFV----SLSVLDITHNKF 559
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 32.0 bits (71), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
Query: 158 QIGNLTRIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVE-LKTLAIF 216
Q+ NL ++ LNLS+N G F +E LD++ L+ K PH + L L +
Sbjct: 370 QLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVL 429
Query: 217 SVAYNNLSGEIPEWTAQFATFNESSYEGNTF 247
++++ L A + +GN+F
Sbjct: 430 NLSHCLLDTSNQHLLAGLQDLRHLNLQGNSF 460
Score = 30.4 bits (67), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 63/146 (43%), Gaps = 22/146 (15%)
Query: 99 LPSCTFSNCSSLVTLDLSYNRINGSIPEWNIAYIYQGKVLSLLSGL-DLSCNKLISHIPP 157
L F C L LD+++ ++ P ++ +VL+L L D S L++ +
Sbjct: 390 LEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLLDTSNQHLLAGLQD 449
Query: 158 -----------QIGNLTR---------IETLNLSHNNLTGSIPSTFSNLKHVESLDLSNN 197
Q G++++ +E L LS NL F L++V LDLS+N
Sbjct: 450 LRHLNLQGNSFQDGSISKTNLLQMVGSLEILILSSCNLLSIDQQAFHGLRNVNHLDLSHN 509
Query: 198 KLNGKIPHQLVELKTLAIFSVAYNNL 223
L G L LK L + ++A NN+
Sbjct: 510 SLTGDSMDALSHLKGLYL-NMASNNI 534
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 65/292 (22%), Positives = 106/292 (36%), Gaps = 61/292 (20%)
Query: 1 SLVLSNNSLNGHMFPRNFNLTNLRWLQLDGN--HFVG-ENPQSLSKCSSLEGLYLNNNSL 57
SL L +N ++ P NF NL+ L N H++ ++ SL + ++L L N N +
Sbjct: 132 SLHLGSNHISSINLPENFPTQNLKVLDFQNNAIHYISRKDTNSLEQATNL-SLNFNGNDI 190
Query: 58 SGKIP---------------------------------RWLGNLTRLNHIIMPENHLEGL 84
G P WLG + + EGL
Sbjct: 191 KGIEPGAFISKIFQSLKFGGSLNLFIIFKGLQNSTLQSLWLGTFEDTDDQYLTSATFEGL 250
Query: 85 IPILDISDNNISGR---LPSCTFSNCSSLVTLDLSYNRINGSIPEWNIAYIYQGKVLSLL 141
+ S N R L S TF + + LDL+ +NG +P K++
Sbjct: 251 CDMSVESINLQKHRFSDLSSSTFRCFTRVQELDLTAAHLNG-LPSGIEGMNSLKKLVLNA 309
Query: 142 SGLDLSCNKLISHIPPQ-----IGNLTR-------------IETLNLSHNNLTGSIPS-- 181
+ D C + P GN+ + ++ L+LSH+++ S
Sbjct: 310 NSFDQLCQINAASFPSLRDLYIKGNMRKLDLGTRCLEKLENLQKLDLSHSDIEASDCCNL 369
Query: 182 TFSNLKHVESLDLSNNKLNGKIPHQLVELKTLAIFSVAYNNLSGEIPEWTAQ 233
NL+H++ L+LS N+ G E L + VA+ +L + P Q
Sbjct: 370 QLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQ 421
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 31.6 bits (70), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 51/224 (22%), Positives = 90/224 (40%), Gaps = 48/224 (21%)
Query: 16 RNFNLTNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHII 75
R L NL LQ++ + + + +++ LY+ N++ P N+ L ++
Sbjct: 69 RQVELLNLNDLQIEE-----IDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123
Query: 76 MPENHLEGL----------IPILDISDNNISGRLPSCTFSNCSSLVTLDLSYNRING--- 122
+ N L L + L +S+NN+ R+ TF +SL L LS NR+
Sbjct: 124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHVDL 182
Query: 123 ----SIPEWNIAY-----------------------IYQGKVLSLLSGLDLSCNKLISHI 155
S+ N++Y + +G V L+ L L N L
Sbjct: 183 SLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD-- 240
Query: 156 PPQIGNLTRIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKL 199
+ N + ++LS+N L + F ++ +E L +SNN+L
Sbjct: 241 TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL 284
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 50/119 (42%), Gaps = 20/119 (16%)
Query: 85 IPILDISDNNISGRLPSCTFSNCSSLVTLDLSYNRING-------SIPEWNIAYIYQGKV 137
+ IL + NN++ + N LV +DLSYN + + YI ++
Sbjct: 228 LTILKLQHNNLTD---TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL 284
Query: 138 LSL---------LSGLDLSCNKLISHIPPQIGNLTRIETLNLSHNNLTGSIPSTFSNLK 187
++L L LDLS N L+ H+ R+E L L HN++ ST LK
Sbjct: 285 VALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLK 342
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 31.6 bits (70), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 165 IETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLAIFSVAYNNLS 224
I + L N + P FS K + +DLSNN+++ P L++L V Y N
Sbjct: 34 ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSL-VLYGNKI 92
Query: 225 GEIPE 229
E+P+
Sbjct: 93 TELPK 97
Score = 27.7 bits (60), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 152 ISHIPP-QIGNLTRIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVE 209
I IPP ++ ++LS+N ++ P F L+ + SL L NK+ ++P L E
Sbjct: 44 IKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFE 101
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 31.6 bits (70), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 165 IETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLAIFSVAYNNLS 224
I + L N + P FS K + +DLSNN+++ P L++L V Y N
Sbjct: 34 ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSL-VLYGNKI 92
Query: 225 GEIPE 229
E+P+
Sbjct: 93 TELPK 97
Score = 27.7 bits (60), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 152 ISHIPP-QIGNLTRIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVE 209
I IPP ++ ++LS+N ++ P F L+ + SL L NK+ ++P L E
Sbjct: 44 IKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFE 101
>pdb|4DVQ|A Chain A, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Deoxycorticosterone
pdb|4DVQ|B Chain B, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Deoxycorticosterone
pdb|4DVQ|C Chain C, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Deoxycorticosterone
pdb|4DVQ|D Chain D, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Deoxycorticosterone
pdb|4DVQ|E Chain E, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Deoxycorticosterone
pdb|4DVQ|F Chain F, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Deoxycorticosterone
pdb|4DVQ|G Chain G, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Deoxycorticosterone
pdb|4DVQ|H Chain H, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Deoxycorticosterone
pdb|4DVQ|I Chain I, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Deoxycorticosterone
pdb|4DVQ|J Chain J, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Deoxycorticosterone
pdb|4DVQ|K Chain K, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Deoxycorticosterone
pdb|4DVQ|L Chain L, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Deoxycorticosterone
pdb|4FDH|A Chain A, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Fadrozole
pdb|4FDH|B Chain B, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Fadrozole
pdb|4FDH|C Chain C, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Fadrozole
pdb|4FDH|D Chain D, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Fadrozole
pdb|4FDH|E Chain E, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Fadrozole
pdb|4FDH|F Chain F, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Fadrozole
pdb|4FDH|G Chain G, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Fadrozole
pdb|4FDH|H Chain H, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Fadrozole
pdb|4FDH|I Chain I, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Fadrozole
pdb|4FDH|J Chain J, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Fadrozole
pdb|4FDH|K Chain K, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Fadrozole
pdb|4FDH|L Chain L, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Fadrozole
Length = 483
Score = 30.8 bits (68), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 31/69 (44%)
Query: 62 PRWLGNLTRLNHIIMPENHLEGLIPILDISDNNISGRLPSCTFSNCSSLVTLDLSYNRIN 121
P W N RLN ++ ++ +P++D + S L N +TLD+ + +
Sbjct: 109 PEWRFNRLRLNPDVLSPKAVQRFLPMVDAVARDFSQALKKKVLQNARGSLTLDVQPSIFH 168
Query: 122 GSIPEWNIA 130
+I N+A
Sbjct: 169 YTIEASNLA 177
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 30.8 bits (68), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 54/226 (23%), Positives = 95/226 (42%), Gaps = 52/226 (23%)
Query: 16 RNFNLTNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHII 75
R L NL LQ++ + + + +++ LY+ N++ P N+ L ++
Sbjct: 75 RQVELLNLNDLQIEEI-----DTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129
Query: 76 MPENHLEGL----------IPILDISDNNISGRLPSCTFSNCSSLVTLDLSYNRING--- 122
+ N L L + L +S+NN+ R+ TF +SL L LS NR+
Sbjct: 130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHVDL 188
Query: 123 ----SIPEWNIAYIYQGKVLSLLS------GLDLSCNKL----------ISHIPPQIGNL 162
S+ N++Y +LS L+ LD S N + ++ + Q NL
Sbjct: 189 SLIPSLFHANVSY----NLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNL 244
Query: 163 TR---------IETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKL 199
T + ++LS+N L + F ++ +E L +SNN+L
Sbjct: 245 TDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL 290
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 50/119 (42%), Gaps = 20/119 (16%)
Query: 85 IPILDISDNNISGRLPSCTFSNCSSLVTLDLSYNRING-------SIPEWNIAYIYQGKV 137
+ IL + NN++ + N LV +DLSYN + + YI ++
Sbjct: 234 LTILKLQHNNLTD---TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL 290
Query: 138 LSL---------LSGLDLSCNKLISHIPPQIGNLTRIETLNLSHNNLTGSIPSTFSNLK 187
++L L LDLS N L+ H+ R+E L L HN++ ST LK
Sbjct: 291 VALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLK 348
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
Query: 142 SGLDLSCN-KLISHIPPQIGNLTRIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLN 200
SG + C+ K ++ +P I T++ L L N +T P F L + LDL NN+L
Sbjct: 10 SGTTVDCSGKSLASVPTGIPTTTQV--LYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLT 67
Query: 201 ---GKIPHQLVELKTLAI 215
+ +L +L L++
Sbjct: 68 VLPAGVFDKLTQLTQLSL 85
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
Query: 142 SGLDLSCN-KLISHIPPQIGNLTRIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLN 200
SG + C+ K ++ +P I T++ L L N +T P F L + LDL NN+L
Sbjct: 18 SGTTVDCSGKSLASVPTGIPTTTQV--LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT 75
Query: 201 ---GKIPHQLVELKTLAI 215
+ +L +L L++
Sbjct: 76 VLPAGVFDKLTQLTQLSL 93
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
Query: 142 SGLDLSCN-KLISHIPPQIGNLTRIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLN 200
SG + C+ K ++ +P I T++ L L N +T P F L + LDL NN+L
Sbjct: 10 SGTTVDCSGKSLASVPTGIPTTTQV--LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT 67
Query: 201 ---GKIPHQLVELKTLAI 215
+ +L +L L++
Sbjct: 68 VLPAGVFDKLTQLTQLSL 85
>pdb|3ALF|A Chain A, Crystal Structure Of Class V Chitinase From Nicotiana
Tobaccum
Length = 353
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 56/137 (40%), Gaps = 15/137 (10%)
Query: 9 LNGHMFPRNFNLTNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGK--IPRWLG 66
+NG +P NL W+ L F G N S S+ +S L+ N +SG I W+
Sbjct: 162 VNGLNYPVESLARNLDWINLMAYDFYGPN-WSPSQTNSHAQLFDPVNHVSGSDGINAWI- 219
Query: 67 NLTRLNHIIMPENHLEGLIPILDIS----DNNISG-RLPSCTFSNCSSLVTLDLSYNRIN 121
+P L IP + + NI G R P+ SN ++ ++YNRI
Sbjct: 220 ------QAGVPTKKLVLGIPFYGYAWRLVNANIHGLRAPAAGKSNVGAVDDGSMTYNRIR 273
Query: 122 GSIPEWNIAYIYQGKVL 138
I E +Y ++
Sbjct: 274 DYIVESRATTVYNATIV 290
>pdb|3ALG|A Chain A, Crystal Structure Of Class V Chitinase (E115q Mutant) From
Nicotiana Tobaccum In Complex With Nag4
Length = 353
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 56/137 (40%), Gaps = 15/137 (10%)
Query: 9 LNGHMFPRNFNLTNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGK--IPRWLG 66
+NG +P NL W+ L F G N S S+ +S L+ N +SG I W+
Sbjct: 162 VNGLNYPVESLARNLDWINLMAYDFYGPN-WSPSQTNSHAQLFDPVNHVSGSDGINAWI- 219
Query: 67 NLTRLNHIIMPENHLEGLIPILDIS----DNNISG-RLPSCTFSNCSSLVTLDLSYNRIN 121
+P L IP + + NI G R P+ SN ++ ++YNRI
Sbjct: 220 ------QAGVPTKKLVLGIPFYGYAWRLVNANIHGLRAPAAGKSNVGAVDDGSMTYNRIR 273
Query: 122 GSIPEWNIAYIYQGKVL 138
I E +Y ++
Sbjct: 274 DYIVESRATTVYNATIV 290
>pdb|4FS7|A Chain A, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Bacova_04585) From Bacteroides Ovatus Atcc 8483
At 1.19 A Resolution
Length = 394
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 44 CSSLEGLYLNNNSL--SGKIPRWLGNLTRLNH--IIMPENHLEGLIPILDISDNNISGRL 99
C+ LE + + NN L G + L ++ + +I+PE G + ++ + +
Sbjct: 252 CTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVPEKTFYGCSSLTEVKLLDSVKFI 311
Query: 100 PSCTFSNCSSLVTLDLSY 117
F +C+SLV++DL Y
Sbjct: 312 GEEAFESCTSLVSIDLPY 329
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 61/232 (26%), Positives = 97/232 (41%), Gaps = 25/232 (10%)
Query: 19 NLTNLRWLQLDGN--HFVGENPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIM 76
LT L L L N F G QS +SL+ L L+ N + +LG L +L H+
Sbjct: 50 KLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLG-LEQLEHLDF 108
Query: 77 PENHLEGL-----------IPILDISDNNISGRLPSCTFSNCSSLVTLDLSYNRINGSIP 125
++L+ + + LDIS + F+ SSL L ++ N S
Sbjct: 109 QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG-IFNGLSSLEVLKMAGN----SFQ 163
Query: 126 EWNIAYIYQGKVLSLLSGLDLSCNKLISHIPPQIGNLTRIETLNLSHNNLTGSIPSTFSN 185
E + I+ L L+ LDLS +L P +L+ ++ LN+SHNN +
Sbjct: 164 ENFLPDIFTE--LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKC 221
Query: 186 LKHVESLDLSNNKLNGKIPHQLVELKTLAIFSVAYNNLSGEIPEWTAQFATF 237
L ++ LD S N + +L + S+A+ NL+ T + +F
Sbjct: 222 LNSLQVLDYSLNHIMTSKKQELQHFPS----SLAFLNLTQNDFACTCEHQSF 269
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
Query: 139 SLLSGLDLSCNKLISHIPPQIGNLTRIETLNLSHNNLTGSIPS 181
L+ L L+ N L + +P +I NL+ + L+LSHN LT S+P+
Sbjct: 247 DFLTRLYLNGNSL-TELPAEIKNLSNLRVLDLSHNRLT-SLPA 287
>pdb|1XWD|C Chain C, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
pdb|1XWD|F Chain F, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
Length = 252
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 88 LDISDNNISGRLPSCTFSNCSSLVTLDLSYNRINGSIPEWNI 129
L++SDNN LP+ F S V LD+S RI+ S+P + +
Sbjct: 182 LNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYGL 222
>pdb|1KPS|B Chain B, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
pdb|1KPS|D Chain D, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
Length = 171
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 49 GLYLNNNSLSGKIPRWLGNLTRLNHIIMPENHLEGLIPILDISDNNISGRLPSCTFSNCS 108
GL + + + IP G L LNH++ + + L P+L +G L +C+F+ +
Sbjct: 105 GLLKSEDKIKA-IPSLHGPLMVLNHVVRQDYFPKALAPLLLAFVTKPNGALETCSFARHN 163
Query: 109 SLVTL 113
L TL
Sbjct: 164 LLQTL 168
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 27.7 bits (60), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 19 NLTNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPE 78
+LT L L L N + L+ L++ N L+ ++PR + LT L H+ + +
Sbjct: 86 SLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQ 144
Query: 79 NHLEGL 84
N L+ +
Sbjct: 145 NQLKSI 150
>pdb|4AY9|X Chain X, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Y Chain Y, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Z Chain Z, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
Length = 350
Score = 27.7 bits (60), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 88 LDISDNNISGRLPSCTFSNCSSLVTLDLSYNRINGSIPEWNI 129
L++SDNN LP+ F S V LD+S RI+ S+P + +
Sbjct: 182 LNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYGL 222
>pdb|1J4S|A Chain A, Structure Of Artocarpin: A Lectin With Mannose Specificity
(Form 1)
pdb|1J4S|B Chain B, Structure Of Artocarpin: A Lectin With Mannose Specificity
(Form 1)
pdb|1J4S|C Chain C, Structure Of Artocarpin: A Lectin With Mannose Specificity
(Form 1)
pdb|1J4S|D Chain D, Structure Of Artocarpin: A Lectin With Mannose Specificity
(Form 1)
Length = 149
Score = 27.3 bits (59), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 23/57 (40%), Gaps = 7/57 (12%)
Query: 160 GNLTRIETLNLSHNNLTGSIP-------STFSNLKHVESLDLSNNKLNGKIPHQLVE 209
G+ T I + LS+ GS FS KH L N K+ K P + +E
Sbjct: 21 GSYTGIRQIELSYKEAIGSFSVIYDLNGDPFSGPKHTSKLPYKNVKIELKFPDEFLE 77
>pdb|1J4T|A Chain A, Structure Of Artocarpin: A Lectin With Mannose Specificity
(Form 2)
pdb|1J4T|B Chain B, Structure Of Artocarpin: A Lectin With Mannose Specificity
(Form 2)
pdb|1J4T|C Chain C, Structure Of Artocarpin: A Lectin With Mannose Specificity
(Form 2)
pdb|1J4T|D Chain D, Structure Of Artocarpin: A Lectin With Mannose Specificity
(Form 2)
pdb|1J4T|E Chain E, Structure Of Artocarpin: A Lectin With Mannose Specificity
(Form 2)
pdb|1J4T|F Chain F, Structure Of Artocarpin: A Lectin With Mannose Specificity
(Form 2)
pdb|1J4T|G Chain G, Structure Of Artocarpin: A Lectin With Mannose Specificity
(Form 2)
pdb|1J4T|H Chain H, Structure Of Artocarpin: A Lectin With Mannose Specificity
(Form 2)
pdb|1J4U|A Chain A, Structure Of Artocarpin Complexed With Me-Alpha-Mannose
pdb|1J4U|B Chain B, Structure Of Artocarpin Complexed With Me-Alpha-Mannose
pdb|1J4U|C Chain C, Structure Of Artocarpin Complexed With Me-Alpha-Mannose
pdb|1J4U|D Chain D, Structure Of Artocarpin Complexed With Me-Alpha-Mannose
Length = 149
Score = 27.3 bits (59), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 23/57 (40%), Gaps = 7/57 (12%)
Query: 160 GNLTRIETLNLSHNNLTGSIP-------STFSNLKHVESLDLSNNKLNGKIPHQLVE 209
G+ T I + LS+ GS FS KH L N K+ K P + +E
Sbjct: 21 GSYTGIRQIELSYKEAIGSFSVIYDLNGDPFSGPKHTSKLPYKNVKIELKFPDEFLE 77
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte
Receptor 2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte
Receptor 2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte
Receptor 2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte
Receptor 2913 Ectodomain
Length = 174
Score = 27.3 bits (59), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 30/64 (46%)
Query: 21 TNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPENH 80
T+ + L L+ N P +L+ LY N+N L+ LT+L + + +NH
Sbjct: 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92
Query: 81 LEGL 84
L+ +
Sbjct: 93 LKSI 96
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.134 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,692,089
Number of Sequences: 62578
Number of extensions: 309808
Number of successful extensions: 1345
Number of sequences better than 100.0: 118
Number of HSP's better than 100.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 694
Number of HSP's gapped (non-prelim): 375
length of query: 249
length of database: 14,973,337
effective HSP length: 96
effective length of query: 153
effective length of database: 8,965,849
effective search space: 1371774897
effective search space used: 1371774897
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)