Query 042000
Match_columns 249
No_of_seqs 157 out of 2300
Neff 11.1
Searched_HMMs 46136
Date Fri Mar 29 12:57:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042000.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042000hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 1.1E-27 2.4E-32 214.6 16.2 219 2-228 145-373 (968)
2 PLN00113 leucine-rich repeat r 100.0 2.1E-27 4.6E-32 212.7 15.5 238 1-246 168-439 (968)
3 KOG4194 Membrane glycoprotein 99.9 9.7E-27 2.1E-31 186.1 2.6 239 1-247 153-428 (873)
4 KOG4194 Membrane glycoprotein 99.9 2.7E-25 5.9E-30 177.9 1.1 239 2-249 202-453 (873)
5 KOG4237 Extracellular matrix p 99.9 7.6E-24 1.7E-28 162.2 -2.1 248 1-249 71-360 (498)
6 KOG0444 Cytoskeletal regulator 99.9 8.1E-24 1.8E-28 171.3 -3.2 232 2-248 108-375 (1255)
7 KOG0472 Leucine-rich repeat pr 99.8 1.3E-22 2.9E-27 156.0 -4.3 237 3-248 234-541 (565)
8 KOG0444 Cytoskeletal regulator 99.8 5.3E-22 1.1E-26 161.0 -1.7 232 2-246 12-302 (1255)
9 KOG0617 Ras suppressor protein 99.8 1.4E-21 3.1E-26 134.1 -2.6 182 15-247 27-211 (264)
10 KOG0472 Leucine-rich repeat pr 99.8 1.5E-21 3.3E-26 150.2 -7.4 226 3-247 51-309 (565)
11 PLN03210 Resistant to P. syrin 99.8 1.5E-17 3.3E-22 150.7 16.4 237 1-246 615-904 (1153)
12 KOG0618 Serine/threonine phosp 99.7 2.9E-20 6.3E-25 156.1 -4.6 231 2-247 246-488 (1081)
13 cd00116 LRR_RI Leucine-rich re 99.7 2.6E-19 5.7E-24 141.8 0.6 225 19-247 49-319 (319)
14 PRK15387 E3 ubiquitin-protein 99.7 6.2E-17 1.3E-21 138.4 14.7 221 1-248 205-458 (788)
15 PRK15370 E3 ubiquitin-protein 99.7 1.9E-17 4.1E-22 142.1 11.1 222 2-247 183-427 (754)
16 PLN03210 Resistant to P. syrin 99.7 1.3E-16 2.9E-21 144.7 15.2 222 2-245 594-856 (1153)
17 KOG0617 Ras suppressor protein 99.7 5.2E-19 1.1E-23 121.6 -1.6 156 41-247 29-185 (264)
18 PRK15370 E3 ubiquitin-protein 99.7 3.7E-16 8E-21 134.2 13.6 197 21-247 178-400 (754)
19 cd00116 LRR_RI Leucine-rich re 99.7 2.1E-18 4.6E-23 136.6 -0.1 243 1-247 2-290 (319)
20 PRK15387 E3 ubiquitin-protein 99.6 3.7E-15 8.1E-20 127.7 12.6 208 2-233 227-467 (788)
21 KOG4237 Extracellular matrix p 99.6 1.5E-17 3.3E-22 128.0 -1.9 221 21-249 67-336 (498)
22 KOG0618 Serine/threonine phosp 99.6 1E-16 2.3E-21 135.1 -1.4 204 21-246 241-463 (1081)
23 KOG1909 Ran GTPase-activating 99.4 5.8E-15 1.3E-19 112.2 -2.2 141 104-247 153-310 (382)
24 KOG0532 Leucine-rich repeat (L 99.4 1.8E-14 3.9E-19 116.1 -3.2 171 23-224 77-247 (722)
25 KOG1909 Ran GTPase-activating 99.4 2.1E-14 4.6E-19 109.2 -3.1 218 18-246 27-281 (382)
26 PLN03150 hypothetical protein; 99.3 3.8E-12 8.2E-17 108.8 8.2 109 141-249 420-529 (623)
27 KOG3207 Beta-tubulin folding c 99.3 1.1E-12 2.4E-17 102.8 0.5 65 19-83 119-186 (505)
28 COG4886 Leucine-rich repeat (L 99.2 3.8E-11 8.3E-16 98.0 6.3 179 18-226 113-292 (394)
29 PF14580 LRR_9: Leucine-rich r 99.2 3.5E-11 7.6E-16 85.6 5.2 126 106-242 17-147 (175)
30 PF14580 LRR_9: Leucine-rich r 99.2 5.1E-11 1.1E-15 84.8 5.5 106 138-247 18-125 (175)
31 KOG0532 Leucine-rich repeat (L 99.2 1.2E-12 2.6E-17 105.8 -3.1 189 2-222 80-271 (722)
32 COG4886 Leucine-rich repeat (L 99.1 9.2E-11 2E-15 95.7 5.5 173 2-204 121-294 (394)
33 KOG1259 Nischarin, modulator o 99.1 2.7E-11 5.8E-16 91.2 1.1 189 44-247 213-411 (490)
34 KOG3207 Beta-tubulin folding c 99.1 1.6E-11 3.4E-16 96.4 -0.3 203 2-225 126-340 (505)
35 PLN03150 hypothetical protein; 99.1 4.5E-10 9.8E-15 96.3 7.5 109 22-151 419-527 (623)
36 PF13855 LRR_8: Leucine rich r 99.0 2.5E-10 5.3E-15 67.2 3.4 60 21-80 1-60 (61)
37 PF13855 LRR_8: Leucine rich r 99.0 3.6E-10 7.9E-15 66.4 3.4 59 164-222 2-60 (61)
38 COG5238 RNA1 Ran GTPase-activa 99.0 5E-11 1.1E-15 88.4 -1.9 237 2-247 35-315 (388)
39 KOG4658 Apoptotic ATPase [Sign 98.9 7.1E-10 1.5E-14 97.5 2.0 86 17-118 567-652 (889)
40 KOG1259 Nischarin, modulator o 98.8 6.2E-10 1.3E-14 84.0 0.4 193 16-225 209-413 (490)
41 KOG0531 Protein phosphatase 1, 98.7 9.7E-10 2.1E-14 90.1 -1.2 188 4-224 79-268 (414)
42 KOG4658 Apoptotic ATPase [Sign 98.7 5.7E-09 1.2E-13 92.0 2.5 79 1-80 575-653 (889)
43 KOG1859 Leucine-rich repeat pr 98.7 8.8E-10 1.9E-14 92.1 -2.9 108 137-249 185-293 (1096)
44 KOG2120 SCF ubiquitin ligase, 98.7 1.2E-10 2.6E-15 87.6 -7.4 180 22-222 186-374 (419)
45 COG5238 RNA1 Ran GTPase-activa 98.7 3.1E-09 6.7E-14 79.1 -0.5 217 19-246 28-283 (388)
46 KOG0531 Protein phosphatase 1, 98.7 1.5E-09 3.3E-14 89.0 -2.7 192 20-245 71-265 (414)
47 KOG2982 Uncharacterized conser 98.6 9.4E-09 2E-13 77.5 0.9 210 17-247 41-261 (418)
48 KOG2982 Uncharacterized conser 98.5 1.6E-08 3.5E-13 76.3 -0.3 184 19-217 69-285 (418)
49 KOG2120 SCF ubiquitin ligase, 98.5 2.2E-09 4.8E-14 80.9 -6.0 178 46-245 186-373 (419)
50 KOG4579 Leucine-rich repeat (L 98.1 3.4E-07 7.4E-12 61.4 -1.3 89 139-230 53-141 (177)
51 PRK15386 type III secretion pr 98.1 3.9E-05 8.4E-10 61.8 9.6 55 19-79 50-104 (426)
52 KOG1859 Leucine-rich repeat pr 98.1 3E-07 6.4E-12 77.5 -2.5 102 138-246 163-265 (1096)
53 KOG3665 ZYG-1-like serine/thre 98.1 1.2E-06 2.7E-11 75.6 1.1 129 104-240 144-280 (699)
54 KOG4579 Leucine-rich repeat (L 98.0 5.9E-07 1.3E-11 60.3 -1.0 79 163-244 53-132 (177)
55 PF12799 LRR_4: Leucine Rich r 98.0 9.4E-06 2E-10 43.8 3.5 36 188-224 2-37 (44)
56 KOG4341 F-box protein containi 98.0 1.9E-07 4.1E-12 73.6 -4.6 62 19-80 162-227 (483)
57 PF12799 LRR_4: Leucine Rich r 98.0 1.2E-05 2.6E-10 43.4 3.5 37 163-200 1-37 (44)
58 KOG1644 U2-associated snRNP A' 97.9 2.4E-05 5.1E-10 56.2 4.8 109 21-150 42-151 (233)
59 KOG3665 ZYG-1-like serine/thre 97.8 4.1E-06 8.9E-11 72.5 0.5 134 21-177 122-264 (699)
60 KOG1644 U2-associated snRNP A' 97.6 7.3E-05 1.6E-09 53.8 3.9 105 138-244 41-149 (233)
61 PRK15386 type III secretion pr 97.6 0.00019 4.2E-09 57.9 6.6 119 65-221 48-187 (426)
62 PF13306 LRR_5: Leucine rich r 97.5 0.0011 2.3E-08 45.1 7.9 38 40-78 7-44 (129)
63 PF13306 LRR_5: Leucine rich r 97.3 0.0011 2.3E-08 45.0 6.8 86 14-117 5-90 (129)
64 KOG2739 Leucine-rich acidic nu 97.3 0.00025 5.5E-09 53.0 3.4 39 138-176 64-104 (260)
65 KOG4341 F-box protein containi 97.0 7E-05 1.5E-09 59.6 -1.9 132 105-241 317-458 (483)
66 KOG2123 Uncharacterized conser 97.0 4.1E-05 9E-10 57.8 -3.5 99 107-217 18-123 (388)
67 KOG1947 Leucine rich repeat pr 96.8 0.00037 8E-09 58.5 0.2 61 20-80 187-254 (482)
68 KOG2739 Leucine-rich acidic nu 96.4 0.0035 7.5E-08 47.1 3.1 102 138-241 42-149 (260)
69 KOG2123 Uncharacterized conser 96.4 0.00032 7E-09 53.2 -2.3 100 138-241 18-123 (388)
70 KOG3864 Uncharacterized conser 96.3 0.00087 1.9E-08 48.4 -0.2 81 141-221 103-186 (221)
71 PF00560 LRR_1: Leucine Rich R 96.0 0.0026 5.7E-08 28.5 0.5 18 213-231 2-19 (22)
72 KOG3864 Uncharacterized conser 95.2 0.0022 4.7E-08 46.4 -2.0 83 164-246 102-187 (221)
73 PF13504 LRR_7: Leucine rich r 94.9 0.018 3.9E-07 23.9 1.2 13 212-224 2-14 (17)
74 PF13516 LRR_6: Leucine Rich r 94.2 0.014 2.9E-07 26.7 0.1 20 211-230 2-21 (24)
75 KOG4308 LRR-containing protein 94.1 8.4E-05 1.8E-09 61.8 -12.9 39 163-201 262-304 (478)
76 KOG1947 Leucine rich repeat pr 93.7 0.021 4.5E-07 48.0 0.2 105 137-241 212-327 (482)
77 KOG4308 LRR-containing protein 93.6 0.00023 5.1E-09 59.2 -11.2 85 162-246 203-301 (478)
78 KOG0473 Leucine-rich repeat pr 91.8 0.0028 6.2E-08 47.0 -6.3 84 138-224 41-124 (326)
79 smart00370 LRR Leucine-rich re 91.1 0.21 4.6E-06 23.1 1.9 15 21-35 2-16 (26)
80 smart00369 LRR_TYP Leucine-ric 91.1 0.21 4.6E-06 23.1 1.9 15 21-35 2-16 (26)
81 KOG0473 Leucine-rich repeat pr 90.1 0.0058 1.2E-07 45.4 -6.1 88 14-119 35-122 (326)
82 smart00368 LRR_RI Leucine rich 83.5 0.59 1.3E-05 22.1 0.8 15 211-225 2-16 (28)
83 smart00364 LRR_BAC Leucine-ric 80.9 1.1 2.4E-05 20.8 1.2 18 211-229 2-19 (26)
84 KOG3763 mRNA export factor TAP 80.7 1.1 2.3E-05 37.9 1.9 37 185-221 216-254 (585)
85 smart00367 LRR_CC Leucine-rich 78.2 0.97 2.1E-05 20.8 0.5 14 211-224 2-16 (26)
86 smart00365 LRR_SD22 Leucine-ri 75.2 2.9 6.4E-05 19.4 1.7 14 21-34 2-15 (26)
87 KOG4242 Predicted myosin-I-bin 66.1 19 0.00041 30.4 5.5 60 164-223 414-480 (553)
88 KOG3763 mRNA export factor TAP 63.7 4 8.6E-05 34.8 1.3 63 139-201 218-284 (585)
89 TIGR00864 PCC polycystin catio 23.9 52 0.0011 34.4 1.9 32 3-34 1-32 (2740)
90 TIGR00864 PCC polycystin catio 23.4 68 0.0015 33.7 2.6 32 145-176 1-32 (2740)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.95 E-value=1.1e-27 Score=214.55 Aligned_cols=219 Identities=40% Similarity=0.575 Sum_probs=115.7
Q ss_pred eEeeccccCCCCCCCCCCCCcccEEEccCccCCCCCCccccCCCCCCeEEccCccccccccccccccCCCCeEeCCCCcC
Q 042000 2 LVLSNNSLNGHMFPRNFNLTNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPENHL 81 (249)
Q Consensus 2 l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 81 (249)
|+|++|.+++..|..+.++++|++|++++|.+.+..|..++++++|++|++++|.+.+..|..+..+++|++|++++|.+
T Consensus 145 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 224 (968)
T PLN00113 145 LDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNL 224 (968)
T ss_pred EECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCcc
Confidence 45555555555566666666666666666666555566666666666666666666555566666666666666666655
Q ss_pred cCc----------cceEEeccccccccCCCCCcCCCCCccEEEccCccccccCCCcchhhhcccchhcccceEEcccCee
Q 042000 82 EGL----------IPILDISDNNISGRLPSCTFSNCSSLVTLDLSYNRINGSIPEWNIAYIYQGKVLSLLSGLDLSCNKL 151 (249)
Q Consensus 82 ~~~----------~~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 151 (249)
... +..+++++|.+.+.++. .+..+++|++|++++|.+.+.+|... ..+.+|++|++++|.+
T Consensus 225 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~L~~n~l~~~~p~~l-------~~l~~L~~L~Ls~n~l 296 (968)
T PLN00113 225 SGEIPYEIGGLTSLNHLDLVYNNLTGPIPS-SLGNLKNLQYLFLYQNKLSGPIPPSI-------FSLQKLISLDLSDNSL 296 (968)
T ss_pred CCcCChhHhcCCCCCEEECcCceeccccCh-hHhCCCCCCEEECcCCeeeccCchhH-------hhccCcCEEECcCCee
Confidence 432 33456666655544444 55556666666666665554444321 1234455555555554
Q ss_pred cccCCcccCCCCCccEEeCCCCCCccCCchhccCCcccCEEEeeCCcccCCcChhhhcCCCccEEEccccccccCCC
Q 042000 152 ISHIPPQIGNLTRIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLAIFSVAYNNLSGEIP 228 (249)
Q Consensus 152 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 228 (249)
....+..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+++.+|
T Consensus 297 ~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p 373 (968)
T PLN00113 297 SGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIP 373 (968)
T ss_pred ccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCC
Confidence 44444444444445555554444444444444444444444444444444444444444444444444444433333
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.95 E-value=2.1e-27 Score=212.75 Aligned_cols=238 Identities=34% Similarity=0.490 Sum_probs=151.3
Q ss_pred CeEeeccccCCCCCCCCCCCCcccEEEccCccCCCCCCccccCCCCCCeEEccCccccccccccccccCCCCeEeCCCCc
Q 042000 1 SLVLSNNSLNGHMFPRNFNLTNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPENH 80 (249)
Q Consensus 1 ~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 80 (249)
+|++++|.+.+.+|..+.++++|++|++++|.+.+..|..++++.+|++|++++|.+.+..|..+..+++|++|++++|.
T Consensus 168 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~ 247 (968)
T PLN00113 168 VLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNN 247 (968)
T ss_pred EEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCce
Confidence 36788888877788888888888888888888777777777788888888888887777777777778888888887776
Q ss_pred CcCc----------cceEEeccccccccCCCCCcCCCCCccEEEccCccccccCCCcchhhhcccchhcccceEEcccCe
Q 042000 81 LEGL----------IPILDISDNNISGRLPSCTFSNCSSLVTLDLSYNRINGSIPEWNIAYIYQGKVLSLLSGLDLSCNK 150 (249)
Q Consensus 81 ~~~~----------~~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 150 (249)
+.+. ++.++++.|.+.+.++. .+..+++|++|++++|.+.+.+|... ..+++|+.|++++|.
T Consensus 248 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~Ls~n~l~~~~p~~~-------~~l~~L~~L~l~~n~ 319 (968)
T PLN00113 248 LTGPIPSSLGNLKNLQYLFLYQNKLSGPIPP-SIFSLQKLISLDLSDNSLSGEIPELV-------IQLQNLEILHLFSNN 319 (968)
T ss_pred eccccChhHhCCCCCCEEECcCCeeeccCch-hHhhccCcCEEECcCCeeccCCChhH-------cCCCCCcEEECCCCc
Confidence 6532 44567777776655555 56666777777777777665554421 123445555555555
Q ss_pred ecccCCcccCCCCCccEEeCCCCCCccCCchhccCC------------------------cccCEEEeeCCcccCCcChh
Q 042000 151 LISHIPPQIGNLTRIETLNLSHNNLTGSIPSTFSNL------------------------KHVESLDLSNNKLNGKIPHQ 206 (249)
Q Consensus 151 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~------------------------~~L~~l~l~~n~~~~~~~~~ 206 (249)
+....+..+..+++|+.|++++|.+.+..|..+..+ ++++.+++++|.+.+..|..
T Consensus 320 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~ 399 (968)
T PLN00113 320 FTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKS 399 (968)
T ss_pred cCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHH
Confidence 444444444444555555555555444444444444 44555555555554455555
Q ss_pred hhcCCCccEEEccccccccCCChhhhhhcccccccccCCc
Q 042000 207 LVELKTLAIFSVAYNNLSGEIPEWTAQFATFNESSYEGNT 246 (249)
Q Consensus 207 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~n~ 246 (249)
+..+++|+.|++++|.+++.+|..+..++.|+.+++++|.
T Consensus 400 ~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~ 439 (968)
T PLN00113 400 LGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNN 439 (968)
T ss_pred HhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCc
Confidence 5556666666666666665566666666666666666654
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.92 E-value=9.7e-27 Score=186.13 Aligned_cols=239 Identities=23% Similarity=0.258 Sum_probs=171.9
Q ss_pred CeEeeccccCCCCCCCCCCCCcccEEEccCccCCCCCCccccCCCCCCeEEccCccccccccccccccCCCCeEeCCCCc
Q 042000 1 SLVLSNNSLNGHMFPRNFNLTNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPENH 80 (249)
Q Consensus 1 ~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 80 (249)
+||||.|.|+...-++|..-.++++|++++|.++....+.|..+.+|..|.++.|.++...+.+|.++++|+.|++.+|.
T Consensus 153 slDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~ 232 (873)
T KOG4194|consen 153 SLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNR 232 (873)
T ss_pred hhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccc
Confidence 47889998887777777777889999999999987777888888899999999999986666788889999999988887
Q ss_pred CcCc----------------------------------cceEEeccccccccCCCCCcCCCCCccEEEccCccccccCCC
Q 042000 81 LEGL----------------------------------IPILDISDNNISGRLPSCTFSNCSSLVTLDLSYNRINGSIPE 126 (249)
Q Consensus 81 ~~~~----------------------------------~~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 126 (249)
+.-. +++++++.|++. .+..+.+.++..|+.|++++|.|....++
T Consensus 233 irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~-~vn~g~lfgLt~L~~L~lS~NaI~rih~d 311 (873)
T KOG4194|consen 233 IRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQ-AVNEGWLFGLTSLEQLDLSYNAIQRIHID 311 (873)
T ss_pred eeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhh-hhhcccccccchhhhhccchhhhheeecc
Confidence 6432 333445555544 33333444555555555555555422111
Q ss_pred cchhhhcccchhcccceEEcccCeecccCCcccCCCCCccEEeCCCCCCccCCchhccCCcccCEEEeeCCcccC---Cc
Q 042000 127 WNIAYIYQGKVLSLLSGLDLSCNKLISHIPPQIGNLTRIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNG---KI 203 (249)
Q Consensus 127 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~---~~ 203 (249)
.+.....|++|+++.|++++..+..|..+..|++|+++.|.+......+|..+.+|++|+++.|.+.. ..
T Consensus 312 -------~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDa 384 (873)
T KOG4194|consen 312 -------SWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDA 384 (873)
T ss_pred -------hhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecc
Confidence 22335678888888888877777777777788888888888875555677777888888888887753 23
Q ss_pred ChhhhcCCCccEEEccccccccCCChhhhhhcccccccccCCcc
Q 042000 204 PHQLVELKTLAIFSVAYNNLSGEIPEWTAQFATFNESSYEGNTF 247 (249)
Q Consensus 204 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~n~~ 247 (249)
...+.++++|+.|++.+|++....-+.|.+++.|+.|++.+|+.
T Consensus 385 a~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~Nai 428 (873)
T KOG4194|consen 385 AVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAI 428 (873)
T ss_pred hhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcc
Confidence 45566788888888888888744445777888888888888874
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.90 E-value=2.7e-25 Score=177.91 Aligned_cols=239 Identities=26% Similarity=0.323 Sum_probs=181.7
Q ss_pred eEeeccccCCCCCCCCCCCCcccEEEccCccCCCCCCccccCCCCCCeEEccCccccccccccccccCCCCeEeCCCCcC
Q 042000 2 LVLSNNSLNGHMFPRNFNLTNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPENHL 81 (249)
Q Consensus 2 l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 81 (249)
|.|+.|.++...+..|.++++|+.|++..|.+...-.-+|..+++|+.+.+..|++...-..+|-.+.++++|++..|.+
T Consensus 202 lkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l 281 (873)
T KOG4194|consen 202 LKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRL 281 (873)
T ss_pred eecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchh
Confidence 44555555533333334455555555555555433234455555566666655655544455777888999999999988
Q ss_pred cCc----------cceEEeccccccccCCCCCcCCCCCccEEEccCccccccCCCcchhhhcccchhcccceEEcccCee
Q 042000 82 EGL----------IPILDISDNNISGRLPSCTFSNCSSLVTLDLSYNRINGSIPEWNIAYIYQGKVLSLLSGLDLSCNKL 151 (249)
Q Consensus 82 ~~~----------~~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 151 (249)
+.. +++++++.|.+. .+........++|++|++++|.++ .+++..+ ..++.|+.|+++.|++
T Consensus 282 ~~vn~g~lfgLt~L~~L~lS~NaI~-rih~d~WsftqkL~~LdLs~N~i~-~l~~~sf------~~L~~Le~LnLs~Nsi 353 (873)
T KOG4194|consen 282 QAVNEGWLFGLTSLEQLDLSYNAIQ-RIHIDSWSFTQKLKELDLSSNRIT-RLDEGSF------RVLSQLEELNLSHNSI 353 (873)
T ss_pred hhhhcccccccchhhhhccchhhhh-eeecchhhhcccceeEeccccccc-cCChhHH------HHHHHhhhhcccccch
Confidence 755 667999999998 665557888999999999999998 5555333 3367899999999998
Q ss_pred cccCCcccCCCCCccEEeCCCCCCcc---CCchhccCCcccCEEEeeCCcccCCcChhhhcCCCccEEEccccccccCCC
Q 042000 152 ISHIPPQIGNLTRIETLNLSHNNLTG---SIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLAIFSVAYNNLSGEIP 228 (249)
Q Consensus 152 ~~~~~~~l~~~~~L~~L~l~~~~~~~---~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 228 (249)
.......|..+.+|++|+++.|.+.+ .....|.+++.|+.|.+.+|++..+...+++++++|++||+.+|.+...-|
T Consensus 354 ~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~ 433 (873)
T KOG4194|consen 354 DHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQP 433 (873)
T ss_pred HHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecc
Confidence 77666778888999999999999874 234567789999999999999997778899999999999999999987778
Q ss_pred hhhhhhcccccccccCCcccC
Q 042000 229 EWTAQFATFNESSYEGNTFLC 249 (249)
Q Consensus 229 ~~~~~~~~l~~l~l~~n~~~c 249 (249)
..|.++ .|++|.+..-.|+|
T Consensus 434 nAFe~m-~Lk~Lv~nSssflC 453 (873)
T KOG4194|consen 434 NAFEPM-ELKELVMNSSSFLC 453 (873)
T ss_pred cccccc-hhhhhhhcccceEE
Confidence 888888 89999888888887
No 5
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.86 E-value=7.6e-24 Score=162.21 Aligned_cols=248 Identities=23% Similarity=0.282 Sum_probs=183.7
Q ss_pred CeEeeccccCCCCCCCCCCCCcccEEEccCccCCCCCCccccCCCCCCeEEccC-ccccccccccccccCCCCeEeCCCC
Q 042000 1 SLVLSNNSLNGHMFPRNFNLTNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNN-NSLSGKIPRWLGNLTRLNHIIMPEN 79 (249)
Q Consensus 1 ~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~ 79 (249)
+++|..|.|+...+.+|..+++|++||+++|.|..+.|++|..+..|..|.+.+ |+++......|.++..++.|.+.-|
T Consensus 71 eirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan 150 (498)
T KOG4237|consen 71 EIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNAN 150 (498)
T ss_pred EEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChh
Confidence 478999999988888999999999999999999988999999999988888877 8888666668888888888888877
Q ss_pred cCcCc----------cceEEeccccccccCCCCCcCCCCCccEEEccCcccc-ccCCCcchhhh----------------
Q 042000 80 HLEGL----------IPILDISDNNISGRLPSCTFSNCSSLVTLDLSYNRIN-GSIPEWNIAYI---------------- 132 (249)
Q Consensus 80 ~~~~~----------~~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~~~---------------- 132 (249)
.+... +..+.+.++.+. .+....+..+..++++.+..|... ...-.+.....
T Consensus 151 ~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~ 229 (498)
T KOG4237|consen 151 HINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPY 229 (498)
T ss_pred hhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchH
Confidence 76654 223556666666 555556777777777766655411 00000000000
Q ss_pred ----------cccchhcccceE--EcccCe-eccc-CCcccCCCCCccEEeCCCCCCccCCchhccCCcccCEEEeeCCc
Q 042000 133 ----------YQGKVLSLLSGL--DLSCNK-LISH-IPPQIGNLTRIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNK 198 (249)
Q Consensus 133 ----------~~~~~~~~L~~L--~l~~~~-~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~ 198 (249)
...+....++.+ .++... .... ....|..+++|+++++++|.++...+.+|....++++|.+..|+
T Consensus 230 rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~ 309 (498)
T KOG4237|consen 230 RLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNK 309 (498)
T ss_pred HHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcch
Confidence 000001111111 011111 1111 11235678999999999999998888999999999999999999
Q ss_pred ccCCcChhhhcCCCccEEEccccccccCCChhhhhhcccccccccCCcccC
Q 042000 199 LNGKIPHQLVELKTLAIFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLC 249 (249)
Q Consensus 199 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~n~~~c 249 (249)
+..+-...|.++..|+.|++.+|+++...|..|..+..|..+++.+|||.|
T Consensus 310 l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~C 360 (498)
T KOG4237|consen 310 LEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNC 360 (498)
T ss_pred HHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccC
Confidence 987778889999999999999999998889999999999999999999998
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.86 E-value=8.1e-24 Score=171.34 Aligned_cols=232 Identities=27% Similarity=0.324 Sum_probs=148.7
Q ss_pred eEeeccccCCCCCCCCCCCCcccEEEccCccCCCCCCccccCCCCCCeEEccCccccccccccccccCCCCeEeCCCCcC
Q 042000 2 LVLSNNSLNGHMFPRNFNLTNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPENHL 81 (249)
Q Consensus 2 l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 81 (249)
||||.|.++ ..|..+...+++-+|+++.|++..+....|.++..|-+|++++|++. .+|+.++.+..|++|.+++|++
T Consensus 108 lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL 185 (1255)
T KOG0444|consen 108 LDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPL 185 (1255)
T ss_pred eecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChh
Confidence 455555554 45555555555555555555554322233445556666666666665 5666667777777777777765
Q ss_pred cCc----------cce-------------------------EEeccccccccCCCCCcCCCCCccEEEccCccccccCCC
Q 042000 82 EGL----------IPI-------------------------LDISDNNISGRLPSCTFSNCSSLVTLDLSYNRINGSIPE 126 (249)
Q Consensus 82 ~~~----------~~~-------------------------l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 126 (249)
... ++. ++++.|.+- .+|. .+..+++|+.|++++|.++...
T Consensus 186 ~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPe-cly~l~~LrrLNLS~N~iteL~-- 261 (1255)
T KOG0444|consen 186 NHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPE-CLYKLRNLRRLNLSGNKITELN-- 261 (1255)
T ss_pred hHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchH-HHhhhhhhheeccCcCceeeee--
Confidence 432 111 333333333 3333 3445556666666666655211
Q ss_pred cchhhhcccchhcccceEEcccCeecccCCcccCCCCCccEEeCCCCCCc-cCCchhccCCcccCEEEeeCCcccCCcCh
Q 042000 127 WNIAYIYQGKVLSLLSGLDLSCNKLISHIPPQIGNLTRIETLNLSHNNLT-GSIPSTFSNLKHVESLDLSNNKLNGKIPH 205 (249)
Q Consensus 127 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~l~l~~n~~~~~~~~ 205 (249)
.......+|++|+++.|+++ ..|..+..++.|+.|.+.+|.++ .-+|+.++.+..|+.++.++|.+. ..|+
T Consensus 262 ------~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPE 333 (1255)
T KOG0444|consen 262 ------MTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPE 333 (1255)
T ss_pred ------ccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCch
Confidence 01122445667777777764 36677777777777777777765 346777777788888888888776 7788
Q ss_pred hhhcCCCccEEEccccccccCCChhhhhhcccccccccCCccc
Q 042000 206 QLVELKTLAIFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFL 248 (249)
Q Consensus 206 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~n~~~ 248 (249)
.++.|+.|+.|.+++|.+. .+|+.+--++.++.+++..||.+
T Consensus 334 glcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 334 GLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred hhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCc
Confidence 8999999999999999887 68888888899999999999854
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.82 E-value=1.3e-22 Score=155.96 Aligned_cols=237 Identities=29% Similarity=0.482 Sum_probs=155.7
Q ss_pred EeeccccCCCCCCCCC-CCCcccEEEccCccCCCCCCccccCCCCCCeEEccCccccccccccccccCCCCeEeCCCCcC
Q 042000 3 VLSNNSLNGHMFPRNF-NLTNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPENHL 81 (249)
Q Consensus 3 ~l~~~~l~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 81 (249)
+...|.|+ .+|.+.. ++.++.+||+++|++. ++|+.+..+.+|++||+++|.++ .+|..++++ +|+.|.+.+|++
T Consensus 234 h~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPl 309 (565)
T KOG0472|consen 234 HVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPL 309 (565)
T ss_pred HhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCch
Confidence 34445554 4444443 5666777777777776 56666666777777777777776 667777777 777777777665
Q ss_pred cCc---------------------------------------------------cceEEeccccccccCCCCCcCCCC--
Q 042000 82 EGL---------------------------------------------------IPILDISDNNISGRLPSCTFSNCS-- 108 (249)
Q Consensus 82 ~~~---------------------------------------------------~~~l~l~~~~~~~~~~~~~~~~l~-- 108 (249)
... ..++++++-++. .+|.++|..-.
T Consensus 310 rTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~ 388 (565)
T KOG0472|consen 310 RTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSE 388 (565)
T ss_pred HHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhc
Confidence 322 001333333333 33333332221
Q ss_pred CccEEEccCccccccCCCcchhh----------------h-cccchhcccceEEcccCeecccCCcccCCCCCccEEeCC
Q 042000 109 SLVTLDLSYNRINGSIPEWNIAY----------------I-YQGKVLSLLSGLDLSCNKLISHIPPQIGNLTRIETLNLS 171 (249)
Q Consensus 109 ~L~~L~l~~~~~~~~~~~~~~~~----------------~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 171 (249)
-....+++.|++. .+|...... . .....++.|..|+++.|-+.+ .|..++.+-.|+.++++
T Consensus 389 ~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~-LP~e~~~lv~Lq~LnlS 466 (565)
T KOG0472|consen 389 IVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLND-LPEEMGSLVRLQTLNLS 466 (565)
T ss_pred ceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhh-cchhhhhhhhhheeccc
Confidence 2445556666654 333321000 0 001235567778888877654 66667777778888888
Q ss_pred CCCCccCCchhccCCcccCEEEeeCCcccCCcChhhhcCCCccEEEccccccccCCChhhhhhcccccccccCCccc
Q 042000 172 HNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLAIFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFL 248 (249)
Q Consensus 172 ~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~n~~~ 248 (249)
.|.|. .+|........++.+-.++|++....++.+..+.+|..||+.+|.+. .+|..++.+++++++.+.||||-
T Consensus 467 ~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 467 FNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred ccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 88887 67877777777777777888887666667889999999999999998 78999999999999999999983
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.82 E-value=5.3e-22 Score=160.95 Aligned_cols=232 Identities=28% Similarity=0.452 Sum_probs=139.2
Q ss_pred eEeeccccC-CCCCCCCCCCCcccEEEccCccCCCCCCccccCCCCCCeEEccCcccc----------------------
Q 042000 2 LVLSNNSLN-GHMFPRNFNLTNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLS---------------------- 58 (249)
Q Consensus 2 l~l~~~~l~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~---------------------- 58 (249)
+|+++|+++ +.+|..+..+..++.|.+...++. .+|..++.+.+|++|.+.+|.+.
T Consensus 12 vDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~L 90 (1255)
T KOG0444|consen 12 VDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNL 90 (1255)
T ss_pred ccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhcccc
Confidence 578899888 566666677777777777777765 56666777777777777776554
Q ss_pred --ccccccccccCCCCeEeCCCCcCcCccc---------eEEeccccccccCCCCCcCCCCCccEEEccCccccccCCCc
Q 042000 59 --GKIPRWLGNLTRLNHIIMPENHLEGLIP---------ILDISDNNISGRLPSCTFSNCSSLVTLDLSYNRINGSIPEW 127 (249)
Q Consensus 59 --~~~~~~~~~l~~L~~L~l~~~~~~~~~~---------~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 127 (249)
..+|..+..+..|+.|++++|++...+. .++++.|++. .+|...+-++..|-+|++++|++. .+|..
T Consensus 91 KnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ 168 (1255)
T KOG0444|consen 91 KNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-MLPPQ 168 (1255)
T ss_pred ccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh-hcCHH
Confidence 1234444455666666666666554422 2555555555 455444555555556666665554 22221
Q ss_pred chhhhcccchhcccceEEcccCeecc-------------------------cCCcccCCCCCccEEeCCCCCCccCCchh
Q 042000 128 NIAYIYQGKVLSLLSGLDLSCNKLIS-------------------------HIPPQIGNLTRIETLNLSHNNLTGSIPST 182 (249)
Q Consensus 128 ~~~~~~~~~~~~~L~~L~l~~~~~~~-------------------------~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 182 (249)
.+.+..|++|.+++|.+.- ..|..+..+.+|..++++.|+++ .+|..
T Consensus 169 -------~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPec 240 (1255)
T KOG0444|consen 169 -------IRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPEC 240 (1255)
T ss_pred -------HHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHH
Confidence 1223344555555554321 23444445556666666666666 56666
Q ss_pred ccCCcccCEEEeeCCcccCCcChhhhcCCCccEEEccccccccCCChhhhhhcccccccccCCc
Q 042000 183 FSNLKHVESLDLSNNKLNGKIPHQLVELKTLAIFSVAYNNLSGEIPEWTAQFATFNESSYEGNT 246 (249)
Q Consensus 183 ~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~n~ 246 (249)
+-.+.+|+.|++++|+++ .+......+.++++|+++.|+++ .+|..+..++.|+.+-+.+|.
T Consensus 241 ly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~Nk 302 (1255)
T KOG0444|consen 241 LYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNK 302 (1255)
T ss_pred HhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCc
Confidence 666666666777776666 34334455566677777777776 677777777777776666654
No 9
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.80 E-value=1.4e-21 Score=134.11 Aligned_cols=182 Identities=27% Similarity=0.464 Sum_probs=116.6
Q ss_pred CCCCCCCcccEEEccCccCCCCCCccccCCCCCCeEEccCccccccccccccccCCCCeEeCCCCcCcCccceEEecccc
Q 042000 15 PRNFNLTNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPENHLEGLIPILDISDNN 94 (249)
Q Consensus 15 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~l~~~~ 94 (249)
+.++++.+++.|.+++|+++ .+|..++.+.+|+.|++.+|.+. .+|..+..+++|++|+++.|.+.
T Consensus 27 ~gLf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~------------ 92 (264)
T KOG0617|consen 27 PGLFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN------------ 92 (264)
T ss_pred ccccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh------------
Confidence 34556677788888888887 55667888888888888888887 77788888888888888777666
Q ss_pred ccccCCCCCcCCCCCccEEEccCccccccCCCcchhhhcccchhcccceEEcccCeecccCCcccCCCCCccEEeCCCCC
Q 042000 95 ISGRLPSCTFSNCSSLVTLDLSYNRINGSIPEWNIAYIYQGKVLSLLSGLDLSCNKLISHIPPQIGNLTRIETLNLSHNN 174 (249)
Q Consensus 95 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 174 (249)
.+|. .|..+|.|+.|++.+|.+++ ...|..|..++.|+.|++++|.
T Consensus 93 ---~lpr-gfgs~p~levldltynnl~e------------------------------~~lpgnff~m~tlralyl~dnd 138 (264)
T KOG0617|consen 93 ---ILPR-GFGSFPALEVLDLTYNNLNE------------------------------NSLPGNFFYMTTLRALYLGDND 138 (264)
T ss_pred ---cCcc-ccCCCchhhhhhcccccccc------------------------------ccCCcchhHHHHHHHHHhcCCC
Confidence 5555 67777778888777776652 2244444445555666666666
Q ss_pred CccCCchhccCCcccCEEEeeCCcccCCcChhhhcCCCccEEEccccccccCCChhhhhhccc---ccccccCCcc
Q 042000 175 LTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLAIFSVAYNNLSGEIPEWTAQFATF---NESSYEGNTF 247 (249)
Q Consensus 175 ~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l---~~l~l~~n~~ 247 (249)
+. .+|..++.+.+|+.|.+.+|.+. .+|..++.+..|+.|++.+|.++ .+|..++.+... +...+..|||
T Consensus 139 fe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l~l~~~k~v~r~E~NPw 211 (264)
T KOG0617|consen 139 FE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANLDLVGNKQVMRMEENPW 211 (264)
T ss_pred cc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhhhhhhhHHHHhhhhCCC
Confidence 65 45555555666666666666555 45555555666666666666655 455445443222 2334445554
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.77 E-value=1.5e-21 Score=150.21 Aligned_cols=226 Identities=25% Similarity=0.403 Sum_probs=136.5
Q ss_pred EeeccccCCCCCCCCCCCCcccEEEccCccCCCCCCccccCCCCCCeEEccCccccccccccccccCCCCeEeCCCCc--
Q 042000 3 VLSNNSLNGHMFPRNFNLTNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPENH-- 80 (249)
Q Consensus 3 ~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-- 80 (249)
+++.|.++ .+.+.+.++..+.++++.+|++. ..|.+++.+..++.++.++|++. .+|+.+..+.++.+++.++|.
T Consensus 51 ils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~ 127 (565)
T KOG0472|consen 51 ILSHNDLE-VLREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK 127 (565)
T ss_pred hhccCchh-hccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee
Confidence 34445554 44444555555555555555554 44445555555555555555554 445555555555555555444
Q ss_pred ---------------------CcCccc---------eEEeccccccccCCCCCcCCCCCccEEEccCccccccCCCcchh
Q 042000 81 ---------------------LEGLIP---------ILDISDNNISGRLPSCTFSNCSSLVTLDLSYNRINGSIPEWNIA 130 (249)
Q Consensus 81 ---------------------~~~~~~---------~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 130 (249)
++..++ .+++.++.+. .+++..+. +..|++++...|.+. .+|+.
T Consensus 128 el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i~-m~~L~~ld~~~N~L~-tlP~~--- 201 (565)
T KOG0472|consen 128 ELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLK-ALPENHIA-MKRLKHLDCNSNLLE-TLPPE--- 201 (565)
T ss_pred ecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchh-hCCHHHHH-HHHHHhcccchhhhh-cCChh---
Confidence 433211 1333334443 33331222 455555555555443 33331
Q ss_pred hhcccchhcccceEEcccCeecccCCcccCCCCCccEEeCCCCCCccCCchhc-cCCcccCEEEeeCCcccCCcChhhhc
Q 042000 131 YIYQGKVLSLLSGLDLSCNKLISHIPPQIGNLTRIETLNLSHNNLTGSIPSTF-SNLKHVESLDLSNNKLNGKIPHQLVE 209 (249)
Q Consensus 131 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~l~l~~n~~~~~~~~~~~~ 209 (249)
...+.+|.-|++..|.+.. .| .|++|..|++++++.|++. .+|... .+++++..|++.+|++. +.|+.++-
T Consensus 202 ----lg~l~~L~~LyL~~Nki~~-lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~cl 273 (565)
T KOG0472|consen 202 ----LGGLESLELLYLRRNKIRF-LP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICL 273 (565)
T ss_pred ----hcchhhhHHHHhhhccccc-CC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHH
Confidence 1224555556666666532 44 5677777777777777777 455443 47888899999999998 78888888
Q ss_pred CCCccEEEccccccccCCChhhhhhcccccccccCCcc
Q 042000 210 LKTLAIFSVAYNNLSGEIPEWTAQFATFNESSYEGNTF 247 (249)
Q Consensus 210 ~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~n~~ 247 (249)
+.+|++||+++|.++ .+|..++.+ .|+.+.+.|||.
T Consensus 274 LrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPl 309 (565)
T KOG0472|consen 274 LRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPL 309 (565)
T ss_pred hhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCch
Confidence 899999999999998 678778888 888899999985
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.77 E-value=1.5e-17 Score=150.71 Aligned_cols=237 Identities=22% Similarity=0.313 Sum_probs=138.4
Q ss_pred CeEeeccccCCCCCCCCCCCCcccEEEccCccCCCCCCccccCCCCCCeEEccCccccccccccccccCCCCeEeCCCCc
Q 042000 1 SLVLSNNSLNGHMFPRNFNLTNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPENH 80 (249)
Q Consensus 1 ~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 80 (249)
+|++++|.++ .+|..+..+++|+.|+++++......| .+..+++|++|++++|.....+|..+..+++|+.|++++|.
T Consensus 615 ~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~ 692 (1153)
T PLN03210 615 KLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCE 692 (1153)
T ss_pred EEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCC
Confidence 3678888876 677777788888888888775444555 36778888888888876555777777888888888887753
Q ss_pred -CcC--------ccceEEeccccccccCCCCCcCCCCCccEEEccCccccccCCCcc-hhhh------------------
Q 042000 81 -LEG--------LIPILDISDNNISGRLPSCTFSNCSSLVTLDLSYNRINGSIPEWN-IAYI------------------ 132 (249)
Q Consensus 81 -~~~--------~~~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~~~------------------ 132 (249)
+.. .+..+++++|.....++. . ..+|++|+++++.+. .+|... +..+
T Consensus 693 ~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~-~---~~nL~~L~L~~n~i~-~lP~~~~l~~L~~L~l~~~~~~~l~~~~~ 767 (1153)
T PLN03210 693 NLEILPTGINLKSLYRLNLSGCSRLKSFPD-I---STNISWLDLDETAIE-EFPSNLRLENLDELILCEMKSEKLWERVQ 767 (1153)
T ss_pred CcCccCCcCCCCCCCEEeCCCCCCcccccc-c---cCCcCeeecCCCccc-cccccccccccccccccccchhhcccccc
Confidence 211 133455655544333332 1 234566666665543 233210 0000
Q ss_pred ----cccchhcccceEEcccCeecccCCcccCCCCCccEEeCCCCCCccCCchhccCCcccCEEEeeC------------
Q 042000 133 ----YQGKVLSLLSGLDLSCNKLISHIPPQIGNLTRIETLNLSHNNLTGSIPSTFSNLKHVESLDLSN------------ 196 (249)
Q Consensus 133 ----~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~------------ 196 (249)
.....+++|+.|++++|......|..++.+++|+.|++++|...+.+|... .+++|+.|++++
T Consensus 768 ~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~ 846 (1153)
T PLN03210 768 PLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDIST 846 (1153)
T ss_pred ccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccccc
Confidence 001113567777777776555567777777788888887775433444433 344455555554
Q ss_pred ---------CcccCCcChhhhcCCCccEEEccccccccCCChhhhhhcccccccccCCc
Q 042000 197 ---------NKLNGKIPHQLVELKTLAIFSVAYNNLSGEIPEWTAQFATFNESSYEGNT 246 (249)
Q Consensus 197 ---------n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~n~ 246 (249)
|.+. .+|.++..+++|+.|++++|.-...+|..+..++.|+.+++.+|+
T Consensus 847 nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 847 NISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred ccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 4443 345555556666666666643222445445555555555555554
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.74 E-value=2.9e-20 Score=156.05 Aligned_cols=231 Identities=32% Similarity=0.412 Sum_probs=149.0
Q ss_pred eEeeccccCCCCCCCCCCCCcccEEEccCccCCCCCCccccCCCCCCeEEccCccccccccccccccCCCCeEeCCCCcC
Q 042000 2 LVLSNNSLNGHMFPRNFNLTNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPENHL 81 (249)
Q Consensus 2 l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 81 (249)
++++.|.++ .+|..+..|.+|+.++...|+++ ..|..+....+|+++.+..|.+. .+|+...+++.|++|++..|.+
T Consensus 246 ~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L 322 (1081)
T KOG0618|consen 246 LDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNL 322 (1081)
T ss_pred eecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhccc
Confidence 445555554 33455555555555555555553 34444444555555555555555 5566666677777777777776
Q ss_pred cCccc-----------eEEeccccccccCCCCCcCCCCCccEEEccCccccccCCCcchhhhcccchhcccceEEcccCe
Q 042000 82 EGLIP-----------ILDISDNNISGRLPSCTFSNCSSLVTLDLSYNRINGSIPEWNIAYIYQGKVLSLLSGLDLSCNK 150 (249)
Q Consensus 82 ~~~~~-----------~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 150 (249)
...+. .++.+.+.+. ..+...-..++.|+.|++.+|.++.. .+..+ ..+.+|+.|++++|+
T Consensus 323 ~~lp~~~l~v~~~~l~~ln~s~n~l~-~lp~~~e~~~~~Lq~LylanN~Ltd~----c~p~l---~~~~hLKVLhLsyNr 394 (1081)
T KOG0618|consen 323 PSLPDNFLAVLNASLNTLNVSSNKLS-TLPSYEENNHAALQELYLANNHLTDS----CFPVL---VNFKHLKVLHLSYNR 394 (1081)
T ss_pred cccchHHHhhhhHHHHHHhhhhcccc-ccccccchhhHHHHHHHHhcCccccc----chhhh---ccccceeeeeecccc
Confidence 65422 1222222222 22211123345677777777776522 11111 235678888888888
Q ss_pred ecccCCcccCCCCCccEEeCCCCCCccCCchhccCCcccCEEEeeCCcccCCcChhhhcCCCccEEEccccccccC-CCh
Q 042000 151 LISHIPPQIGNLTRIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLAIFSVAYNNLSGE-IPE 229 (249)
Q Consensus 151 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~ 229 (249)
+.......+.++..|++|++++|.++ .+|..+..+..|++|...+|.+. ..| .+.+++.|+.+|++.|+++.. ++.
T Consensus 395 L~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~ 471 (1081)
T KOG0618|consen 395 LNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPE 471 (1081)
T ss_pred cccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhh
Confidence 87666667778888888999999888 68888888888888888888887 667 677889999999999998754 333
Q ss_pred hhhhhcccccccccCCcc
Q 042000 230 WTAQFATFNESSYEGNTF 247 (249)
Q Consensus 230 ~~~~~~~l~~l~l~~n~~ 247 (249)
.. .-++|++++++||++
T Consensus 472 ~~-p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 472 AL-PSPNLKYLDLSGNTR 488 (1081)
T ss_pred hC-CCcccceeeccCCcc
Confidence 33 338999999999984
No 13
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.74 E-value=2.6e-19 Score=141.78 Aligned_cols=225 Identities=25% Similarity=0.254 Sum_probs=99.6
Q ss_pred CCCcccEEEccCccCCC------CCCccccCCCCCCeEEccCccccccccccccccCC---CCeEeCCCCcCc-------
Q 042000 19 NLTNLRWLQLDGNHFVG------ENPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTR---LNHIIMPENHLE------- 82 (249)
Q Consensus 19 ~~~~L~~L~l~~~~~~~------~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~---L~~L~l~~~~~~------- 82 (249)
..+.++.++++++.+.. ..+..+..+++|++|++++|.+....+..+..+.+ |++|++++|.+.
T Consensus 49 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l 128 (319)
T cd00116 49 PQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLL 128 (319)
T ss_pred hCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHH
Confidence 44445555555554431 01123344555555555555554333333333333 555555555444
Q ss_pred --------CccceEEeccccccc----cCCCCCcCCCCCccEEEccCccccccCCCcchhhhcccchhcccceEEcccCe
Q 042000 83 --------GLIPILDISDNNISG----RLPSCTFSNCSSLVTLDLSYNRINGSIPEWNIAYIYQGKVLSLLSGLDLSCNK 150 (249)
Q Consensus 83 --------~~~~~l~l~~~~~~~----~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 150 (249)
..+..+++++|.+.+ .+.. .+..+++|++|++++|.+.+.... ..........+|++|++++|.
T Consensus 129 ~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~---~l~~~l~~~~~L~~L~L~~n~ 204 (319)
T cd00116 129 AKGLKDLPPALEKLVLGRNRLEGASCEALAK-ALRANRDLKELNLANNGIGDAGIR---ALAEGLKANCNLEVLDLNNNG 204 (319)
T ss_pred HHHHHhCCCCceEEEcCCCcCCchHHHHHHH-HHHhCCCcCEEECcCCCCchHHHH---HHHHHHHhCCCCCEEeccCCc
Confidence 122334444444331 1111 233344555555555554321000 000011112356666666655
Q ss_pred eccc----CCcccCCCCCccEEeCCCCCCccCCchhc-----cCCcccCEEEeeCCcccC----CcChhhhcCCCccEEE
Q 042000 151 LISH----IPPQIGNLTRIETLNLSHNNLTGSIPSTF-----SNLKHVESLDLSNNKLNG----KIPHQLVELKTLAIFS 217 (249)
Q Consensus 151 ~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~~~~~-----~~~~~L~~l~l~~n~~~~----~~~~~~~~~~~L~~L~ 217 (249)
+.+. ....+..+++|+.|++++|.+.+.....+ ...+.|+++++++|.+++ .+...+..+++|+.++
T Consensus 205 i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~ 284 (319)
T cd00116 205 LTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELD 284 (319)
T ss_pred cChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEE
Confidence 4321 12233445556666666665553111111 113456666666665542 1223344445666666
Q ss_pred ccccccccC----CChhhhhh-cccccccccCCcc
Q 042000 218 VAYNNLSGE----IPEWTAQF-ATFNESSYEGNTF 247 (249)
Q Consensus 218 l~~n~l~~~----~~~~~~~~-~~l~~l~l~~n~~ 247 (249)
+++|.+++. +++.+... +.++++++.+|||
T Consensus 285 l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 285 LRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred CCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 666666533 23333333 4556666666654
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.74 E-value=6.2e-17 Score=138.43 Aligned_cols=221 Identities=24% Similarity=0.279 Sum_probs=134.3
Q ss_pred CeEeeccccCCCCCCCCCCCCcccEEEccCccCCCCCCccccCCCCCCeEEccCccccccccccccccCCCCeEeCCCCc
Q 042000 1 SLVLSNNSLNGHMFPRNFNLTNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPENH 80 (249)
Q Consensus 1 ~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 80 (249)
.|+++++.++ .+|+.+. ++|+.|++.+|+++. +|. ..++|++|++++|.++ .+|.. .++|++|++..|.
T Consensus 205 ~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls~N~ 273 (788)
T PRK15387 205 VLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPVL---PPGLLELSIFSNP 273 (788)
T ss_pred EEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccC-cccCc---ccccceeeccCCc
Confidence 3788899888 6777775 478888888888873 443 2578888888888877 44432 3466777777766
Q ss_pred CcCc------cceEEeccccccccCCCCCcCCCCCccEEEccCccccccCCCcchh---------hhc-ccchhcccceE
Q 042000 81 LEGL------IPILDISDNNISGRLPSCTFSNCSSLVTLDLSYNRINGSIPEWNIA---------YIY-QGKVLSLLSGL 144 (249)
Q Consensus 81 ~~~~------~~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~---------~~~-~~~~~~~L~~L 144 (249)
+... +..+++++|++. .+|. ..++|+.|++++|.+.+ +|..... .+. ....+.+|+.|
T Consensus 274 L~~Lp~lp~~L~~L~Ls~N~Lt-~LP~----~p~~L~~LdLS~N~L~~-Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~L 347 (788)
T PRK15387 274 LTHLPALPSGLCKLWIFGNQLT-SLPV----LPPGLQELSVSDNQLAS-LPALPSELCKLWAYNNQLTSLPTLPSGLQEL 347 (788)
T ss_pred hhhhhhchhhcCEEECcCCccc-cccc----cccccceeECCCCcccc-CCCCcccccccccccCccccccccccccceE
Confidence 5542 334556666555 3433 12456666666666552 2221000 000 00112356667
Q ss_pred EcccCeecccCCcccC-----------------CCCCccEEeCCCCCCccCCchhccCCcccCEEEeeCCcccCCcChhh
Q 042000 145 DLSCNKLISHIPPQIG-----------------NLTRIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQL 207 (249)
Q Consensus 145 ~l~~~~~~~~~~~~l~-----------------~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~ 207 (249)
++++|.++. .|.... ...+|+.|++++|.+. .+|.. .++|+.|++++|.+.+ +|..
T Consensus 348 dLS~N~Ls~-LP~lp~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Lss-IP~l- 420 (788)
T PRK15387 348 SVSDNQLAS-LPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLTS-LPML- 420 (788)
T ss_pred ecCCCccCC-CCCCCcccceehhhccccccCcccccccceEEecCCccc-CCCCc---ccCCCEEEccCCcCCC-CCcc-
Confidence 777666543 221110 0134566666666665 24432 2467777777777763 4432
Q ss_pred hcCCCccEEEccccccccCCChhhhhhcccccccccCCccc
Q 042000 208 VELKTLAIFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFL 248 (249)
Q Consensus 208 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~n~~~ 248 (249)
..+|+.|++++|+++ .+|..+..++.++.+++++|++-
T Consensus 421 --~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls 458 (788)
T PRK15387 421 --PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS 458 (788)
T ss_pred --hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCC
Confidence 246778888888887 68888889999999999999864
No 15
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.73 E-value=1.9e-17 Score=142.06 Aligned_cols=222 Identities=27% Similarity=0.378 Sum_probs=132.9
Q ss_pred eEeeccccCCCCCCCCCCCCcccEEEccCccCCCCCCccccCCCCCCeEEccCccccccccccccccCCCCeEeCCCCcC
Q 042000 2 LVLSNNSLNGHMFPRNFNLTNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPENHL 81 (249)
Q Consensus 2 l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 81 (249)
|+++++.++ .+|..+. ++++.|++++|++. .+|..+. .+|++|++++|.+. .+|..+. .+|+.|++++|.+
T Consensus 183 L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L 253 (754)
T PRK15370 183 LRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRI 253 (754)
T ss_pred EEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCcc
Confidence 566666666 4555443 46777777777766 3343332 46777777777665 4444432 3566677776665
Q ss_pred cCc-------cceEEeccccccccCCCCCcCCCCCccEEEccCccccccCCCcchhh----------h--cccchhcccc
Q 042000 82 EGL-------IPILDISDNNISGRLPSCTFSNCSSLVTLDLSYNRINGSIPEWNIAY----------I--YQGKVLSLLS 142 (249)
Q Consensus 82 ~~~-------~~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~----------~--~~~~~~~~L~ 142 (249)
... +..++++.|.+. .+|. .+. ..|+.|++++|.+. .+|...... + .....+.+|+
T Consensus 254 ~~LP~~l~s~L~~L~Ls~N~L~-~LP~-~l~--~sL~~L~Ls~N~Lt-~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~ 328 (754)
T PRK15370 254 TELPERLPSALQSLDLFHNKIS-CLPE-NLP--EELRYLSVYDNSIR-TLPAHLPSGITHLNVQSNSLTALPETLPPGLK 328 (754)
T ss_pred CcCChhHhCCCCEEECcCCccC-cccc-ccC--CCCcEEECCCCccc-cCcccchhhHHHHHhcCCccccCCccccccce
Confidence 543 445666666665 4554 221 36777777777665 233211000 0 0001234677
Q ss_pred eEEcccCeecccCCcccCCCCCccEEeCCCCCCccCCchhccCCcccCEEEeeCCcccCCcChhhhcCCCccEEEccccc
Q 042000 143 GLDLSCNKLISHIPPQIGNLTRIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLAIFSVAYNN 222 (249)
Q Consensus 143 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~ 222 (249)
.|++++|.++. .|..+. ++|+.|++++|.+. .+|..+ .+.|+.|++++|.+. .+|..+. .+|+.|++++|.
T Consensus 329 ~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~ 399 (754)
T PRK15370 329 TLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALT-NLPENLP--AALQIMQASRNN 399 (754)
T ss_pred eccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCC
Confidence 77777777654 343332 57888888888877 456544 357888888888887 4554443 367888888888
Q ss_pred cccCCChhhhh----hcccccccccCCcc
Q 042000 223 LSGEIPEWTAQ----FATFNESSYEGNTF 247 (249)
Q Consensus 223 l~~~~~~~~~~----~~~l~~l~l~~n~~ 247 (249)
+. .+|..+.. ++.+..+++.+||+
T Consensus 400 L~-~LP~sl~~~~~~~~~l~~L~L~~Npl 427 (754)
T PRK15370 400 LV-RLPESLPHFRGEGPQPTRIIVEYNPF 427 (754)
T ss_pred cc-cCchhHHHHhhcCCCccEEEeeCCCc
Confidence 87 55655543 36778888999886
No 16
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.72 E-value=1.3e-16 Score=144.68 Aligned_cols=222 Identities=22% Similarity=0.230 Sum_probs=133.3
Q ss_pred eEeeccccCCCCCCCCCCCCcccEEEccCccCCCCCCccccCCCCCCeEEccCccccccccccccccCCCCeEeCCCCcC
Q 042000 2 LVLSNNSLNGHMFPRNFNLTNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPENHL 81 (249)
Q Consensus 2 l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 81 (249)
|++.++.++ .+|..+ ...+|++|+++++++. ..+..+..+++|++++++++.....+| .+..+++|++|++.+|..
T Consensus 594 L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~ 669 (1153)
T PLN03210 594 LRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSS 669 (1153)
T ss_pred EEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCC
Confidence 566777776 566665 5789999999999987 567778889999999999876554555 578899999999998753
Q ss_pred cC----------ccceEEeccccccccCCCCCcCCCCCccEEEccCccccccCCCcchhhhcccchhcccceEEcccCee
Q 042000 82 EG----------LIPILDISDNNISGRLPSCTFSNCSSLVTLDLSYNRINGSIPEWNIAYIYQGKVLSLLSGLDLSCNKL 151 (249)
Q Consensus 82 ~~----------~~~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 151 (249)
-. .+..+++++|.....+|. .+ .+++|+.|++++|.....+|+. ..+|++|+++++.+
T Consensus 670 L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~-~i-~l~sL~~L~Lsgc~~L~~~p~~----------~~nL~~L~L~~n~i 737 (1153)
T PLN03210 670 LVELPSSIQYLNKLEDLDMSRCENLEILPT-GI-NLKSLYRLNLSGCSRLKSFPDI----------STNISWLDLDETAI 737 (1153)
T ss_pred ccccchhhhccCCCCEEeCCCCCCcCccCC-cC-CCCCCCEEeCCCCCCccccccc----------cCCcCeeecCCCcc
Confidence 21 144567776655545655 22 5677778887777644444431 34566777776665
Q ss_pred cccCCcccCCC-------------------------------CCccEEeCCCCCCccCCchhccCCcccCEEEeeCCccc
Q 042000 152 ISHIPPQIGNL-------------------------------TRIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLN 200 (249)
Q Consensus 152 ~~~~~~~l~~~-------------------------------~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~ 200 (249)
.. .|..+ .+ ++|+.|++++|.....+|..+..+++|+.|++++|...
T Consensus 738 ~~-lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L 815 (1153)
T PLN03210 738 EE-FPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINL 815 (1153)
T ss_pred cc-ccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCc
Confidence 33 22221 12 34455555555444445555555555555555555333
Q ss_pred CCcChhhhcCCCccEEEccccccccCCChhhhhhcccccccccCC
Q 042000 201 GKIPHQLVELKTLAIFSVAYNNLSGEIPEWTAQFATFNESSYEGN 245 (249)
Q Consensus 201 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~n 245 (249)
+.+|... .+++|+.|++++|.....+|.. .++++.+++++|
T Consensus 816 ~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n 856 (1153)
T PLN03210 816 ETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRT 856 (1153)
T ss_pred CeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECCCC
Confidence 3344333 3455555555555332233322 234555555554
No 17
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.71 E-value=5.2e-19 Score=121.63 Aligned_cols=156 Identities=28% Similarity=0.509 Sum_probs=134.3
Q ss_pred ccCCCCCCeEEccCccccccccccccccCCCCeEeCCCCcCcCccceEEeccccccccCCCCCcCCCCCccEEEccCccc
Q 042000 41 LSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPENHLEGLIPILDISDNNISGRLPSCTFSNCSSLVTLDLSYNRI 120 (249)
Q Consensus 41 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 120 (249)
+.++.+++.|.+++|+++ ..|+.+..+.+|+.|++.+|++. .+|. .++++++|+.|+++-|++
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie---------------~lp~-~issl~klr~lnvgmnrl 91 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE---------------ELPT-SISSLPKLRILNVGMNRL 91 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh---------------hcCh-hhhhchhhhheecchhhh
Confidence 345778888899999888 77788888899998888888877 6666 778888888888776554
Q ss_pred cccCCCcchhhhcccchhcccceEEcccCeecccCCcccCCCCCccEEeCCCCCCc-cCCchhccCCcccCEEEeeCCcc
Q 042000 121 NGSIPEWNIAYIYQGKVLSLLSGLDLSCNKLISHIPPQIGNLTRIETLNLSHNNLT-GSIPSTFSNLKHVESLDLSNNKL 199 (249)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~l~l~~n~~ 199 (249)
. ..|..|+.++.|+.|++++|++. ..+|..|..+..|+.|++++|.+
T Consensus 92 ~--------------------------------~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndf 139 (264)
T KOG0617|consen 92 N--------------------------------ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDF 139 (264)
T ss_pred h--------------------------------cCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCc
Confidence 3 36677888999999999999987 46788888999999999999999
Q ss_pred cCCcChhhhcCCCccEEEccccccccCCChhhhhhcccccccccCCcc
Q 042000 200 NGKIPHQLVELKTLAIFSVAYNNLSGEIPEWTAQFATFNESSYEGNTF 247 (249)
Q Consensus 200 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~n~~ 247 (249)
. .+|..++++++|+.|.++.|.+. .+|+.++.++.|+++++.||..
T Consensus 140 e-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl 185 (264)
T KOG0617|consen 140 E-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRL 185 (264)
T ss_pred c-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhccccee
Confidence 7 89999999999999999999988 7999999999999999999863
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.69 E-value=3.7e-16 Score=134.20 Aligned_cols=197 Identities=26% Similarity=0.400 Sum_probs=129.7
Q ss_pred CcccEEEccCccCCCCCCccccCCCCCCeEEccCccccccccccccccCCCCeEeCCCCcCcCc-------cceEEeccc
Q 042000 21 TNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPENHLEGL-------IPILDISDN 93 (249)
Q Consensus 21 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-------~~~l~l~~~ 93 (249)
.+...|++++++++ .+|..+. ..|+.|++++|.+. .+|..+. .+|++|++++|.+... +..+++++|
T Consensus 178 ~~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~LtsLP~~l~~~L~~L~Ls~N 251 (754)
T PRK15370 178 NNKTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLTSIPATLPDTIQEMELSIN 251 (754)
T ss_pred cCceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccccCChhhhccccEEECcCC
Confidence 45678999999887 4555443 57999999999998 5666554 5899999999988754 456889999
Q ss_pred cccccCCCCCcCCCCCccEEEccCccccccCCCcchhhhcccchhcccceEEcccCeecccCCcccC-------------
Q 042000 94 NISGRLPSCTFSNCSSLVTLDLSYNRINGSIPEWNIAYIYQGKVLSLLSGLDLSCNKLISHIPPQIG------------- 160 (249)
Q Consensus 94 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~------------- 160 (249)
.+. .+|. .+. ..|+.|+++.|.+. .+|+.. +.+|+.|++++|.++. .|..+.
T Consensus 252 ~L~-~LP~-~l~--s~L~~L~Ls~N~L~-~LP~~l---------~~sL~~L~Ls~N~Lt~-LP~~lp~sL~~L~Ls~N~L 316 (754)
T PRK15370 252 RIT-ELPE-RLP--SALQSLDLFHNKIS-CLPENL---------PEELRYLSVYDNSIRT-LPAHLPSGITHLNVQSNSL 316 (754)
T ss_pred ccC-cCCh-hHh--CCCCEEECcCCccC-cccccc---------CCCCcEEECCCCcccc-CcccchhhHHHHHhcCCcc
Confidence 887 6766 332 47999999999887 455421 2467888888877654 222221
Q ss_pred ------CCCCccEEeCCCCCCccCCchhccCCcccCEEEeeCCcccCCcChhhhcCCCccEEEccccccccCCChhhhhh
Q 042000 161 ------NLTRIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLAIFSVAYNNLSGEIPEWTAQF 234 (249)
Q Consensus 161 ------~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~ 234 (249)
..++|+.|++++|.+++ +|..+ .++|+.|++++|.+. .+|..+ .++|+.|++++|.++ .+|..+.
T Consensus 317 t~LP~~l~~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt-~LP~~l~-- 387 (754)
T PRK15370 317 TALPETLPPGLKTLEAGENALTS-LPASL--PPELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALT-NLPENLP-- 387 (754)
T ss_pred ccCCccccccceeccccCCcccc-CChhh--cCcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCC-CCCHhHH--
Confidence 11355556666665552 44333 246777777777665 344433 256777777777776 4555443
Q ss_pred cccccccccCCcc
Q 042000 235 ATFNESSYEGNTF 247 (249)
Q Consensus 235 ~~l~~l~l~~n~~ 247 (249)
..|+.+++++|.+
T Consensus 388 ~sL~~LdLs~N~L 400 (754)
T PRK15370 388 AALQIMQASRNNL 400 (754)
T ss_pred HHHHHHhhccCCc
Confidence 2466666666653
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.69 E-value=2.1e-18 Score=136.59 Aligned_cols=243 Identities=24% Similarity=0.288 Sum_probs=168.3
Q ss_pred CeEeeccccCCCCCCCC-CCCCcccEEEccCccCCCC----CCccccCCCCCCeEEccCcccc------ccccccccccC
Q 042000 1 SLVLSNNSLNGHMFPRN-FNLTNLRWLQLDGNHFVGE----NPQSLSKCSSLEGLYLNNNSLS------GKIPRWLGNLT 69 (249)
Q Consensus 1 ~l~l~~~~l~~~~~~~~-~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~------~~~~~~~~~l~ 69 (249)
.|+|..+.+++.....+ ..+..|++++++++.+... ++..+...+.+++++++++.+. ...+..+..++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 47888888885444444 4678899999999988543 3334556778999999988765 22345677788
Q ss_pred CCCeEeCCCCcCcCc-------------cceEEeccccccc----cCCCCCcCCC-CCccEEEccCccccccCCCcchhh
Q 042000 70 RLNHIIMPENHLEGL-------------IPILDISDNNISG----RLPSCTFSNC-SSLVTLDLSYNRINGSIPEWNIAY 131 (249)
Q Consensus 70 ~L~~L~l~~~~~~~~-------------~~~l~l~~~~~~~----~~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~~~~~ 131 (249)
+|+.|++++|.+... +..++++.|.+.+ .+.. .+..+ ++|++|++++|.+.+..... .
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~-~l~~~~~~L~~L~L~~n~l~~~~~~~---~ 157 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAK-GLKDLPPALEKLVLGRNRLEGASCEA---L 157 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHH-HHHhCCCCceEEEcCCCcCCchHHHH---H
Confidence 999999999887521 5667888877652 1111 34555 78999999999876322111 1
Q ss_pred hcccchhcccceEEcccCeeccc----CCcccCCCCCccEEeCCCCCCccC----CchhccCCcccCEEEeeCCcccCCc
Q 042000 132 IYQGKVLSLLSGLDLSCNKLISH----IPPQIGNLTRIETLNLSHNNLTGS----IPSTFSNLKHVESLDLSNNKLNGKI 203 (249)
Q Consensus 132 ~~~~~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~l~l~~n~~~~~~ 203 (249)
......+..|++|++++|.+.+. .+..+...++|+.|++++|.+.+. ++..+..+++|++|++++|.+.+..
T Consensus 158 ~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~ 237 (319)
T cd00116 158 AKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAG 237 (319)
T ss_pred HHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHH
Confidence 11222346799999999987642 222344557999999999988632 3445667889999999999988643
Q ss_pred Chhhhc-----CCCccEEEccccccccC----CChhhhhhcccccccccCCcc
Q 042000 204 PHQLVE-----LKTLAIFSVAYNNLSGE----IPEWTAQFATFNESSYEGNTF 247 (249)
Q Consensus 204 ~~~~~~-----~~~L~~L~l~~n~l~~~----~~~~~~~~~~l~~l~l~~n~~ 247 (249)
...+.. .+.|++|++++|.+++. ++..+..+++|+.+++++|.+
T Consensus 238 ~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l 290 (319)
T cd00116 238 AAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKF 290 (319)
T ss_pred HHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCC
Confidence 333322 37999999999988732 344555668899999999875
No 20
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.63 E-value=3.7e-15 Score=127.68 Aligned_cols=208 Identities=26% Similarity=0.328 Sum_probs=127.9
Q ss_pred eEeeccccCCCCCCCCCCCCcccEEEccCccCCCCCCccccCCCCCCeEEccCcccccccccccc---------------
Q 042000 2 LVLSNNSLNGHMFPRNFNLTNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGKIPRWLG--------------- 66 (249)
Q Consensus 2 l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~--------------- 66 (249)
|++++|.++ .+|.. .++|++|++++|+++. +|.. .++|++|++.+|.+. .+|..+.
T Consensus 227 L~L~~N~Lt-~LP~l---p~~Lk~LdLs~N~Lts-LP~l---p~sL~~L~Ls~N~L~-~Lp~lp~~L~~L~Ls~N~Lt~L 297 (788)
T PRK15387 227 LVIPDNNLT-SLPAL---PPELRTLEVSGNQLTS-LPVL---PPGLLELSIFSNPLT-HLPALPSGLCKLWIFGNQLTSL 297 (788)
T ss_pred EEccCCcCC-CCCCC---CCCCcEEEecCCccCc-ccCc---ccccceeeccCCchh-hhhhchhhcCEEECcCCccccc
Confidence 567777777 34432 4677888888887763 3321 234455555554443 1111110
Q ss_pred --ccCCCCeEeCCCCcCcCc------cceEEeccccccccCCCCCcCCCCCccEEEccCccccccCCCcchh--------
Q 042000 67 --NLTRLNHIIMPENHLEGL------IPILDISDNNISGRLPSCTFSNCSSLVTLDLSYNRINGSIPEWNIA-------- 130 (249)
Q Consensus 67 --~l~~L~~L~l~~~~~~~~------~~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-------- 130 (249)
..++|+.|++++|.+... +..+++++|.+. .+|. -..+|++|++++|.+.. +|.....
T Consensus 298 P~~p~~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~N~L~-~LP~----lp~~Lq~LdLS~N~Ls~-LP~lp~~L~~L~Ls~ 371 (788)
T PRK15387 298 PVLPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLT-SLPT----LPSGLQELSVSDNQLAS-LPTLPSELYKLWAYN 371 (788)
T ss_pred cccccccceeECCCCccccCCCCcccccccccccCccc-cccc----cccccceEecCCCccCC-CCCCCcccceehhhc
Confidence 124566666666665542 222444444443 2332 01357777887777763 3321000
Q ss_pred -hhc-ccchhcccceEEcccCeecccCCcccCCCCCccEEeCCCCCCccCCchhccCCcccCEEEeeCCcccCCcChhhh
Q 042000 131 -YIY-QGKVLSLLSGLDLSCNKLISHIPPQIGNLTRIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLV 208 (249)
Q Consensus 131 -~~~-~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~ 208 (249)
.+. ....+.+|+.|++++|.++. .|.. .++|+.|++++|.+. .+|.. ..+|+.|++++|.++ .+|..+.
T Consensus 372 N~L~~LP~l~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~ 442 (788)
T PRK15387 372 NRLTSLPALPSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLI 442 (788)
T ss_pred cccccCcccccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHh
Confidence 000 00113468889999998764 3432 368999999999998 46653 357889999999998 6898999
Q ss_pred cCCCccEEEccccccccCCChhhhh
Q 042000 209 ELKTLAIFSVAYNNLSGEIPEWTAQ 233 (249)
Q Consensus 209 ~~~~L~~L~l~~n~l~~~~~~~~~~ 233 (249)
.+++++.+++++|.+++..+..+..
T Consensus 443 ~L~~L~~LdLs~N~Ls~~~~~~L~~ 467 (788)
T PRK15387 443 HLSSETTVNLEGNPLSERTLQALRE 467 (788)
T ss_pred hccCCCeEECCCCCCCchHHHHHHH
Confidence 9999999999999999887776643
No 21
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.63 E-value=1.5e-17 Score=128.01 Aligned_cols=221 Identities=22% Similarity=0.224 Sum_probs=143.8
Q ss_pred CcccEEEccCccCCCCCCccccCCCCCCeEEccCccccccccccccccCCCCeEeCCC-CcCcCccc----------eEE
Q 042000 21 TNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPE-NHLEGLIP----------ILD 89 (249)
Q Consensus 21 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~----------~l~ 89 (249)
+...++++..|+|+...+.+|..+++|+.|++++|.++...|.+|.++.++..|.+.+ |+|+.... .+.
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL 146 (498)
T ss_pred CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence 3556899999999988899999999999999999999989999999999998887766 88874311 122
Q ss_pred eccccccccCCCCCcCCCCCccEEEccCccccccCCCcchhhhcccchhcccceEEcccCeec---------c---cCCc
Q 042000 90 ISDNNISGRLPSCTFSNCSSLVTLDLSYNRINGSIPEWNIAYIYQGKVLSLLSGLDLSCNKLI---------S---HIPP 157 (249)
Q Consensus 90 l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~---------~---~~~~ 157 (249)
+.-+++. -+....+..++++..|.+..|.+. .++...+ .....++.+.+..|.+. + ..+.
T Consensus 147 lNan~i~-Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf------~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~i 218 (498)
T KOG4237|consen 147 LNANHIN-CIRQDALRDLPSLSLLSLYDNKIQ-SICKGTF------QGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPI 218 (498)
T ss_pred cChhhhc-chhHHHHHHhhhcchhcccchhhh-hhccccc------cchhccchHhhhcCccccccccchhhhHHhhchh
Confidence 2222222 222234555556666655555543 2222111 11233333333322210 0 0000
Q ss_pred ccCCCC----------------------CccEE---eCCCCCCccCCc-hhccCCcccCEEEeeCCcccCCcChhhhcCC
Q 042000 158 QIGNLT----------------------RIETL---NLSHNNLTGSIP-STFSNLKHVESLDLSNNKLNGKIPHQLVELK 211 (249)
Q Consensus 158 ~l~~~~----------------------~L~~L---~l~~~~~~~~~~-~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~ 211 (249)
.++.+. .++.+ -.+.+.....-| ..|..+++|+.+++++|+++++-+.+|+.+.
T Consensus 219 etsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a 298 (498)
T KOG4237|consen 219 ETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAA 298 (498)
T ss_pred hcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchh
Confidence 000000 11111 011121221222 4677899999999999999999999999999
Q ss_pred CccEEEccccccccCCChhhhhhcccccccccCCcccC
Q 042000 212 TLAIFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLC 249 (249)
Q Consensus 212 ~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~n~~~c 249 (249)
.++.|.+..|++...-..+|.++..|+.+++.+|..-|
T Consensus 299 ~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~ 336 (498)
T KOG4237|consen 299 ELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITT 336 (498)
T ss_pred hhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEE
Confidence 99999999999986667788999999999999997543
No 22
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.58 E-value=1e-16 Score=135.08 Aligned_cols=204 Identities=29% Similarity=0.423 Sum_probs=140.3
Q ss_pred CcccEEEccCccCCCCCCccccCCCCCCeEEccCccccccccccccccCCCCeEeCCCCcCcCccceEEeccccccccCC
Q 042000 21 TNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPENHLEGLIPILDISDNNISGRLP 100 (249)
Q Consensus 21 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~l~~~~~~~~~~ 100 (249)
.++++++++.+++. ..|..+..+.+|+.+...+|.+. .+|..+....+|+.+.+.+|.+. .++
T Consensus 241 ~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~---------------yip 303 (1081)
T KOG0618|consen 241 LNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE---------------YIP 303 (1081)
T ss_pred ccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh---------------hCC
Confidence 34555566555555 33455555566666666655554 44555555555555555555544 444
Q ss_pred CCCcCCCCCccEEEccCccccccCCCcchhh-------------------hcccchhcccceEEcccCeecccCCcccCC
Q 042000 101 SCTFSNCSSLVTLDLSYNRINGSIPEWNIAY-------------------IYQGKVLSLLSGLDLSCNKLISHIPPQIGN 161 (249)
Q Consensus 101 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~-------------------~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ 161 (249)
. .......|++|++..|.+. .+|+..+.. .........|+.|.+.+|++++..-+.+..
T Consensus 304 ~-~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~ 381 (1081)
T KOG0618|consen 304 P-FLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVN 381 (1081)
T ss_pred C-cccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhcc
Confidence 4 4445566666666666554 333321110 011123445777888899988877777888
Q ss_pred CCCccEEeCCCCCCccCCchhccCCcccCEEEeeCCcccCCcChhhhcCCCccEEEccccccccCCChhhhhhccccccc
Q 042000 162 LTRIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLAIFSVAYNNLSGEIPEWTAQFATFNESS 241 (249)
Q Consensus 162 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~ 241 (249)
+..|+.|++++|.+.......+..+..|++|+++||+++ .+|..+-.++.|++|...+|.+. ..| .+..++.|+.++
T Consensus 382 ~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lD 458 (1081)
T KOG0618|consen 382 FKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLD 458 (1081)
T ss_pred ccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEe
Confidence 899999999999998544456688999999999999998 68888888999999999999988 678 588999999999
Q ss_pred ccCCc
Q 042000 242 YEGNT 246 (249)
Q Consensus 242 l~~n~ 246 (249)
++.|.
T Consensus 459 lS~N~ 463 (1081)
T KOG0618|consen 459 LSCNN 463 (1081)
T ss_pred cccch
Confidence 99885
No 23
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.44 E-value=5.8e-15 Score=112.20 Aligned_cols=141 Identities=17% Similarity=0.227 Sum_probs=97.9
Q ss_pred cCCCCCccEEEccCccccccCCCcchhhhcccchhcccceEEcccCeeccc----CCcccCCCCCccEEeCCCCCCcc--
Q 042000 104 FSNCSSLVTLDLSYNRINGSIPEWNIAYIYQGKVLSLLSGLDLSCNKLISH----IPPQIGNLTRIETLNLSHNNLTG-- 177 (249)
Q Consensus 104 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~-- 177 (249)
..+-++||++..++|++. ..+...+... .+..+.|+.+.+..|.+... ....+..++.|+.|++.+|.++.
T Consensus 153 ~~~~~~Lrv~i~~rNrle-n~ga~~~A~~--~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~eg 229 (382)
T KOG1909|consen 153 AASKPKLRVFICGRNRLE-NGGATALAEA--FQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEG 229 (382)
T ss_pred cCCCcceEEEEeeccccc-cccHHHHHHH--HHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHH
Confidence 344567899888888765 2222222222 23346788888888876432 23456778999999999999873
Q ss_pred --CCchhccCCcccCEEEeeCCcccCCcChhh-----hcCCCccEEEccccccccC----CChhhhhhcccccccccCCc
Q 042000 178 --SIPSTFSNLKHVESLDLSNNKLNGKIPHQL-----VELKTLAIFSVAYNNLSGE----IPEWTAQFATFNESSYEGNT 246 (249)
Q Consensus 178 --~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~-----~~~~~L~~L~l~~n~l~~~----~~~~~~~~~~l~~l~l~~n~ 246 (249)
.+..++..+++|+.+++++|.+...+...+ ...|+|+.+.+.+|.++.. +...+..-+.|..|++++|.
T Consensus 230 s~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 230 SVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred HHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 345667788899999999998876544333 3368999999999998744 33344566888889999987
Q ss_pred c
Q 042000 247 F 247 (249)
Q Consensus 247 ~ 247 (249)
+
T Consensus 310 l 310 (382)
T KOG1909|consen 310 L 310 (382)
T ss_pred c
Confidence 5
No 24
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.37 E-value=1.8e-14 Score=116.09 Aligned_cols=171 Identities=32% Similarity=0.505 Sum_probs=92.4
Q ss_pred ccEEEccCccCCCCCCccccCCCCCCeEEccCccccccccccccccCCCCeEeCCCCcCcCccceEEeccccccccCCCC
Q 042000 23 LRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPENHLEGLIPILDISDNNISGRLPSC 102 (249)
Q Consensus 23 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~l~~~~~~~~~~~~ 102 (249)
-...|++.|++. .+|..+..+..|+.+.+++|.+. .+|.++..+..|++++++.|.++ .+|.
T Consensus 77 t~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS---------------~lp~- 138 (722)
T KOG0532|consen 77 TVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS---------------HLPD- 138 (722)
T ss_pred hhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh---------------cCCh-
Confidence 334677777776 55555655666777777777665 66677777777777777777766 4444
Q ss_pred CcCCCCCccEEEccCccccccCCCcchhhhcccchhcccceEEcccCeecccCCcccCCCCCccEEeCCCCCCccCCchh
Q 042000 103 TFSNCSSLVTLDLSYNRINGSIPEWNIAYIYQGKVLSLLSGLDLSCNKLISHIPPQIGNLTRIETLNLSHNNLTGSIPST 182 (249)
Q Consensus 103 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 182 (249)
.+-.+ -|+.|.+++|++. .+|+.. .....|..|+.+.|.+.. .+..++.+.+|+.|++..|.+. .+|..
T Consensus 139 ~lC~l-pLkvli~sNNkl~-~lp~~i-------g~~~tl~~ld~s~nei~s-lpsql~~l~slr~l~vrRn~l~-~lp~E 207 (722)
T KOG0532|consen 139 GLCDL-PLKVLIVSNNKLT-SLPEEI-------GLLPTLAHLDVSKNEIQS-LPSQLGYLTSLRDLNVRRNHLE-DLPEE 207 (722)
T ss_pred hhhcC-cceeEEEecCccc-cCCccc-------ccchhHHHhhhhhhhhhh-chHHhhhHHHHHHHHHhhhhhh-hCCHH
Confidence 22222 3666666666654 333311 112334445555554422 3444444555555555555554 23333
Q ss_pred ccCCcccCEEEeeCCcccCCcChhhhcCCCccEEEccccccc
Q 042000 183 FSNLKHVESLDLSNNKLNGKIPHQLVELKTLAIFSVAYNNLS 224 (249)
Q Consensus 183 ~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~ 224 (249)
+..+ .|..||++.|++. .+|-.|..+..|++|-|.+|.+.
T Consensus 208 l~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 208 LCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred HhCC-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC
Confidence 3322 2455555555554 44555555555555555555554
No 25
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.37 E-value=2.1e-14 Score=109.19 Aligned_cols=218 Identities=17% Similarity=0.169 Sum_probs=154.3
Q ss_pred CCCCcccEEEccCccCCCCCC----ccccCCCCCCeEEccCcccc---cc-------ccccccccCCCCeEeCCCCcCcC
Q 042000 18 FNLTNLRWLQLDGNHFVGENP----QSLSKCSSLEGLYLNNNSLS---GK-------IPRWLGNLTRLNHIIMPENHLEG 83 (249)
Q Consensus 18 ~~~~~L~~L~l~~~~~~~~~~----~~~~~l~~L~~L~l~~~~~~---~~-------~~~~~~~l~~L~~L~l~~~~~~~ 83 (249)
..+..++.+++++|.+...-. ..+++.+.|+..++++--.. .. +.+++..+++|+++++++|.+..
T Consensus 27 ~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~ 106 (382)
T KOG1909|consen 27 EPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP 106 (382)
T ss_pred cccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc
Confidence 356788999999999875433 34556788999998874211 12 23445567799999999998764
Q ss_pred ccceEEeccccccccCCCCCcCCCCCccEEEccCccccccCCCcchh------hhcccchhcccceEEcccCeeccc---
Q 042000 84 LIPILDISDNNISGRLPSCTFSNCSSLVTLDLSYNRINGSIPEWNIA------YIYQGKVLSLLSGLDLSCNKLISH--- 154 (249)
Q Consensus 84 ~~~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~------~~~~~~~~~~L~~L~l~~~~~~~~--- 154 (249)
.-.. .+.. .++++..|++|.+.+|.+...-...... ........+.|+.+.+..|++.+.
T Consensus 107 ~g~~----------~l~~-ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~ 175 (382)
T KOG1909|consen 107 KGIR----------GLEE-LLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGAT 175 (382)
T ss_pred cchH----------HHHH-HHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHH
Confidence 3111 2222 5677888999999999876321111100 122223466799999999987553
Q ss_pred -CCcccCCCCCccEEeCCCCCCcc----CCchhccCCcccCEEEeeCCcccC----CcChhhhcCCCccEEEcccccccc
Q 042000 155 -IPPQIGNLTRIETLNLSHNNLTG----SIPSTFSNLKHVESLDLSNNKLNG----KIPHQLVELKTLAIFSVAYNNLSG 225 (249)
Q Consensus 155 -~~~~l~~~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~l~l~~n~~~~----~~~~~~~~~~~L~~L~l~~n~l~~ 225 (249)
+...+...+.|+.+.+..|.|.. .+...+.++++|+.|++.+|.++. .+...++.+++|+.+++++|.+..
T Consensus 176 ~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~ 255 (382)
T KOG1909|consen 176 ALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLEN 255 (382)
T ss_pred HHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccccccc
Confidence 23445667899999999999872 234577899999999999998874 356778889999999999999986
Q ss_pred CCChhh-----hhhcccccccccCCc
Q 042000 226 EIPEWT-----AQFATFNESSYEGNT 246 (249)
Q Consensus 226 ~~~~~~-----~~~~~l~~l~l~~n~ 246 (249)
.....+ ...|.|+.+.+.+|-
T Consensus 256 ~Ga~a~~~al~~~~p~L~vl~l~gNe 281 (382)
T KOG1909|consen 256 EGAIAFVDALKESAPSLEVLELAGNE 281 (382)
T ss_pred ccHHHHHHHHhccCCCCceeccCcch
Confidence 655444 356899999999885
No 26
>PLN03150 hypothetical protein; Provisional
Probab=99.33 E-value=3.8e-12 Score=108.85 Aligned_cols=109 Identities=34% Similarity=0.571 Sum_probs=100.2
Q ss_pred cceEEcccCeecccCCcccCCCCCccEEeCCCCCCccCCchhccCCcccCEEEeeCCcccCCcChhhhcCCCccEEEccc
Q 042000 141 LSGLDLSCNKLISHIPPQIGNLTRIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLAIFSVAY 220 (249)
Q Consensus 141 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~ 220 (249)
++.|+++++.+....+..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|+.+..+++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 77889999998888888899999999999999999989999999999999999999999999999999999999999999
Q ss_pred cccccCCChhhhhh-cccccccccCCcccC
Q 042000 221 NNLSGEIPEWTAQF-ATFNESSYEGNTFLC 249 (249)
Q Consensus 221 n~l~~~~~~~~~~~-~~l~~l~l~~n~~~c 249 (249)
|.+++.+|..+... ..+..+++.+|+.+|
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc 529 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAGLC 529 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCcccc
Confidence 99999999988753 466788999999888
No 27
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=1.1e-12 Score=102.78 Aligned_cols=65 Identities=20% Similarity=0.262 Sum_probs=39.5
Q ss_pred CCCcccEEEccCccCCCCCC-ccccCCCCCCeEEccCccccc--cccccccccCCCCeEeCCCCcCcC
Q 042000 19 NLTNLRWLQLDGNHFVGENP-QSLSKCSSLEGLYLNNNSLSG--KIPRWLGNLTRLNHIIMPENHLEG 83 (249)
Q Consensus 19 ~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~ 83 (249)
++..|+++.+.++.+..... .....+++++.|++++|=+.. .+......+++|+.|+++.|.+..
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~ 186 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSN 186 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccC
Confidence 55667777777766542111 123457777778877764432 233455677777777777776653
No 28
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.18 E-value=3.8e-11 Score=97.98 Aligned_cols=179 Identities=36% Similarity=0.522 Sum_probs=100.4
Q ss_pred CCCCcccEEEccCccCCCCCCccccCCC-CCCeEEccCccccccccccccccCCCCeEeCCCCcCcCccceEEecccccc
Q 042000 18 FNLTNLRWLQLDGNHFVGENPQSLSKCS-SLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPENHLEGLIPILDISDNNIS 96 (249)
Q Consensus 18 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~l~~~~~~ 96 (249)
...+.++.+++.++.+. ..+....... +|+.+++++|.+. .++..++.+++|+.|+++.|++.
T Consensus 113 ~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-------------- 176 (394)
T COG4886 113 LELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-------------- 176 (394)
T ss_pred hcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh--------------
Confidence 34455666666666665 3333444443 6667777766665 44445566666776666666665
Q ss_pred ccCCCCCcCCCCCccEEEccCccccccCCCcchhhhcccchhcccceEEcccCeecccCCcccCCCCCccEEeCCCCCCc
Q 042000 97 GRLPSCTFSNCSSLVTLDLSYNRINGSIPEWNIAYIYQGKVLSLLSGLDLSCNKLISHIPPQIGNLTRIETLNLSHNNLT 176 (249)
Q Consensus 97 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 176 (249)
.++. .....+.|+.|+++++.+. .+|... ..+..|+++.+++|+... .+..+..+.++..+.+..|++.
T Consensus 177 -~l~~-~~~~~~~L~~L~ls~N~i~-~l~~~~-------~~~~~L~~l~~~~N~~~~-~~~~~~~~~~l~~l~l~~n~~~ 245 (394)
T COG4886 177 -DLPK-LLSNLSNLNNLDLSGNKIS-DLPPEI-------ELLSALEELDLSNNSIIE-LLSSLSNLKNLSGLELSNNKLE 245 (394)
T ss_pred -hhhh-hhhhhhhhhheeccCCccc-cCchhh-------hhhhhhhhhhhcCCccee-cchhhhhcccccccccCCceee
Confidence 3333 2224556666666666665 222210 123346666666664222 3344555566666666666655
Q ss_pred cCCchhccCCcccCEEEeeCCcccCCcChhhhcCCCccEEEccccccccC
Q 042000 177 GSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLAIFSVAYNNLSGE 226 (249)
Q Consensus 177 ~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 226 (249)
..+..+..++.++.+++++|.+.+... +....+++.++++++.+...
T Consensus 246 -~~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 246 -DLPESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNA 292 (394)
T ss_pred -eccchhccccccceecccccccccccc--ccccCccCEEeccCcccccc
Confidence 335555666667777777776663322 55666677777776665533
No 29
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.18 E-value=3.5e-11 Score=85.60 Aligned_cols=126 Identities=29% Similarity=0.353 Sum_probs=40.5
Q ss_pred CCCCccEEEccCccccccCCCcchhhhcccchhcccceEEcccCeecccCCcccCCCCCccEEeCCCCCCccCCchhc-c
Q 042000 106 NCSSLVTLDLSYNRINGSIPEWNIAYIYQGKVLSLLSGLDLSCNKLISHIPPQIGNLTRIETLNLSHNNLTGSIPSTF-S 184 (249)
Q Consensus 106 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~-~ 184 (249)
+..++++|++.++.+. .+.. + ...+.+|+.|++++|.++.. +.+..++.|+.|++++|.+.. +...+ .
T Consensus 17 n~~~~~~L~L~~n~I~-~Ie~-----L--~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~-i~~~l~~ 85 (175)
T PF14580_consen 17 NPVKLRELNLRGNQIS-TIEN-----L--GATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISS-ISEGLDK 85 (175)
T ss_dssp --------------------S---------TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHH
T ss_pred cccccccccccccccc-cccc-----h--hhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCc-cccchHH
Confidence 3345666777766665 1111 0 01245567777777776543 345566777777777777773 33333 3
Q ss_pred CCcccCEEEeeCCcccCC-cChhhhcCCCccEEEccccccccCC---Chhhhhhcccccccc
Q 042000 185 NLKHVESLDLSNNKLNGK-IPHQLVELKTLAIFSVAYNNLSGEI---PEWTAQFATFNESSY 242 (249)
Q Consensus 185 ~~~~L~~l~l~~n~~~~~-~~~~~~~~~~L~~L~l~~n~l~~~~---~~~~~~~~~l~~l~l 242 (249)
.+++|++|++++|++.+. -...+..+++|+.|++.+|.++..- ...+..+|+|+.||-
T Consensus 86 ~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 86 NLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp H-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred hCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 467777777777777642 2345566777777777777776431 123346677766653
No 30
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.17 E-value=5.1e-11 Score=84.76 Aligned_cols=106 Identities=26% Similarity=0.349 Sum_probs=42.2
Q ss_pred hcccceEEcccCeecccCCcccC-CCCCccEEeCCCCCCccCCchhccCCcccCEEEeeCCcccCCcChhhhcCCCccEE
Q 042000 138 LSLLSGLDLSCNKLISHIPPQIG-NLTRIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLAIF 216 (249)
Q Consensus 138 ~~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L 216 (249)
+..+++|++.+|.+... +.++ .+.+|+.|++++|.+.. +. .+..+++|++|++++|.+++..+.....+++|++|
T Consensus 18 ~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~-l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 18 PVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITK-LE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQEL 93 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S-CHHHHHH-TT--EE
T ss_pred ccccccccccccccccc--cchhhhhcCCCEEECCCCCCcc-cc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEE
Confidence 45689999999998653 4565 47899999999999993 43 46778999999999999995433333568999999
Q ss_pred EccccccccC-CChhhhhhcccccccccCCcc
Q 042000 217 SVAYNNLSGE-IPEWTAQFATFNESSYEGNTF 247 (249)
Q Consensus 217 ~l~~n~l~~~-~~~~~~~~~~l~~l~l~~n~~ 247 (249)
++++|++... ....+..+++|+.+++.|||.
T Consensus 94 ~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv 125 (175)
T PF14580_consen 94 YLSNNKISDLNELEPLSSLPKLRVLSLEGNPV 125 (175)
T ss_dssp E-TTS---SCCCCGGGGG-TT--EEE-TT-GG
T ss_pred ECcCCcCCChHHhHHHHcCCCcceeeccCCcc
Confidence 9999999753 235577899999999999996
No 31
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.16 E-value=1.2e-12 Score=105.80 Aligned_cols=189 Identities=28% Similarity=0.402 Sum_probs=151.2
Q ss_pred eEeeccccCCCCCCCCCCCCcccEEEccCccCCCCCCccccCCCCCCeEEccCccccccccccccccCCCCeEeCCCCcC
Q 042000 2 LVLSNNSLNGHMFPRNFNLTNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPENHL 81 (249)
Q Consensus 2 l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 81 (249)
.||+.|.+. .+|..++.+-.|+.+.+..|.+. .+|.++.++..|++++++.|.+. .+|..+..++ |+.|.+++|++
T Consensus 80 aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl 155 (722)
T KOG0532|consen 80 ADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKL 155 (722)
T ss_pred hhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCcc
Confidence 578888887 88888888899999999999887 67888999999999999999998 7777766554 88889999988
Q ss_pred cCccceEEeccccccccCCCCCcCCCCCccEEEccCccccccCCCcchhhhcccchhcccceEEcccCeecccCCcccCC
Q 042000 82 EGLIPILDISDNNISGRLPSCTFSNCSSLVTLDLSYNRINGSIPEWNIAYIYQGKVLSLLSGLDLSCNKLISHIPPQIGN 161 (249)
Q Consensus 82 ~~~~~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ 161 (249)
. .+|. .+...+.|..|+.+.|.+. .+|. +...+.+|+.|.+..|++.+ .|+.+.
T Consensus 156 ~---------------~lp~-~ig~~~tl~~ld~s~nei~-slps-------ql~~l~slr~l~vrRn~l~~-lp~El~- 209 (722)
T KOG0532|consen 156 T---------------SLPE-EIGLLPTLAHLDVSKNEIQ-SLPS-------QLGYLTSLRDLNVRRNHLED-LPEELC- 209 (722)
T ss_pred c---------------cCCc-ccccchhHHHhhhhhhhhh-hchH-------HhhhHHHHHHHHHhhhhhhh-CCHHHh-
Confidence 8 6666 5567788999999999876 3333 22346778888999999876 555566
Q ss_pred CCCccEEeCCCCCCccCCchhccCCcccCEEEeeCCcccCCcChhhhcC---CCccEEEccccc
Q 042000 162 LTRIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVEL---KTLAIFSVAYNN 222 (249)
Q Consensus 162 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~---~~L~~L~l~~n~ 222 (249)
.-.|..||++.|++. .+|-.|..+.+|++|-+.+|++. ..|..++.. .-.++|+...|+
T Consensus 210 ~LpLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 210 SLPLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred CCceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence 345999999999999 79999999999999999999998 555555433 445677777774
No 32
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.11 E-value=9.2e-11 Score=95.73 Aligned_cols=173 Identities=39% Similarity=0.543 Sum_probs=126.7
Q ss_pred eEeeccccCCCCCCCCCCCC-cccEEEccCccCCCCCCccccCCCCCCeEEccCccccccccccccccCCCCeEeCCCCc
Q 042000 2 LVLSNNSLNGHMFPRNFNLT-NLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPENH 80 (249)
Q Consensus 2 l~l~~~~l~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 80 (249)
+++.+|.++ .+++...... +|+.|++++|++. ..+..++.++.|+.|++++|.+. .++......+.|+.|++++|+
T Consensus 121 L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~ 197 (394)
T COG4886 121 LDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNK 197 (394)
T ss_pred EecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCc
Confidence 677888887 7788777775 9999999999997 44456889999999999999998 566665588999999999999
Q ss_pred CcCccceEEeccccccccCCCCCcCCCCCccEEEccCccccccCCCcchhhhcccchhcccceEEcccCeecccCCcccC
Q 042000 81 LEGLIPILDISDNNISGRLPSCTFSNCSSLVTLDLSYNRINGSIPEWNIAYIYQGKVLSLLSGLDLSCNKLISHIPPQIG 160 (249)
Q Consensus 81 ~~~~~~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~ 160 (249)
+. .++. .......|+++.+++|.+.... . .......+..+.+.++.+.. .+..++
T Consensus 198 i~---------------~l~~-~~~~~~~L~~l~~~~N~~~~~~-~-------~~~~~~~l~~l~l~~n~~~~-~~~~~~ 252 (394)
T COG4886 198 IS---------------DLPP-EIELLSALEELDLSNNSIIELL-S-------SLSNLKNLSGLELSNNKLED-LPESIG 252 (394)
T ss_pred cc---------------cCch-hhhhhhhhhhhhhcCCcceecc-h-------hhhhcccccccccCCceeee-ccchhc
Confidence 88 5554 3334445888888888432111 1 11234556666677777644 356667
Q ss_pred CCCCccEEeCCCCCCccCCchhccCCcccCEEEeeCCcccCCcC
Q 042000 161 NLTRIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIP 204 (249)
Q Consensus 161 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 204 (249)
.+++++.|++++|.+.. ++. +....+++.++++++.+....+
T Consensus 253 ~l~~l~~L~~s~n~i~~-i~~-~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 253 NLSNLETLDLSNNQISS-ISS-LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred cccccceeccccccccc-ccc-ccccCccCEEeccCccccccch
Confidence 77788889999888883 443 7778888889988887764433
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.08 E-value=2.7e-11 Score=91.21 Aligned_cols=189 Identities=22% Similarity=0.224 Sum_probs=123.2
Q ss_pred CCCCCeEEccCccccccccccccccCCCCeEeCCCCcCcCccc---e---EEecc---ccccccCCCCCcCCCCCccEEE
Q 042000 44 CSSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPENHLEGLIP---I---LDISD---NNISGRLPSCTFSNCSSLVTLD 114 (249)
Q Consensus 44 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---~---l~l~~---~~~~~~~~~~~~~~l~~L~~L~ 114 (249)
..+|+.+.+++|.-. .+......-+.|+++.+....++.... + .|... ....+.+.. .+..-..|.+++
T Consensus 213 f~~l~~~~~s~~~~~-~i~~~~~~kptl~t~~v~~s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~-~~dTWq~LtelD 290 (490)
T KOG1259|consen 213 FRNLKTLKFSALSTE-NIVDIELLKPTLQTICVHNTTIQDVPSLLPETILADPSGSEPSTSNGSALV-SADTWQELTELD 290 (490)
T ss_pred hhhhheeeeeccchh-heeceeecCchhheeeeecccccccccccchhhhcCccCCCCCccCCceEE-ecchHhhhhhcc
Confidence 457777888877543 222222234567777776665554311 1 01000 000001111 222234688889
Q ss_pred ccCccccccCCCcchhhhcccchhcccceEEcccCeecccCCcccCCCCCccEEeCCCCCCccCCchhccCCcccCEEEe
Q 042000 115 LSYNRINGSIPEWNIAYIYQGKVLSLLSGLDLSCNKLISHIPPQIGNLTRIETLNLSHNNLTGSIPSTFSNLKHVESLDL 194 (249)
Q Consensus 115 l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l 194 (249)
+++|.+. .+.+ .....+.++.|+++.|.+... ..+..+++|+.|++++|.+. ....|-..+.++++|.+
T Consensus 291 LS~N~I~-~iDE-------SvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 291 LSGNLIT-QIDE-------SVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKL 359 (490)
T ss_pred ccccchh-hhhh-------hhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeeh
Confidence 9999886 3333 123367789999999988654 34777889999999999988 45566667888999999
Q ss_pred eCCcccCCcChhhhcCCCccEEEccccccccC-CChhhhhhcccccccccCCcc
Q 042000 195 SNNKLNGKIPHQLVELKTLAIFSVAYNNLSGE-IPEWTAQFATFNESSYEGNTF 247 (249)
Q Consensus 195 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~~~~l~~l~l~~n~~ 247 (249)
++|.+.+ ...+..+-+|..||+++|++... -...++++|-|+.+.+.+||.
T Consensus 360 a~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 360 AQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred hhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCc
Confidence 9998863 23456678889999999998743 235678899999999999985
No 34
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=1.6e-11 Score=96.41 Aligned_cols=203 Identities=26% Similarity=0.259 Sum_probs=136.0
Q ss_pred eEeeccccCCCCC-CCCCCCCcccEEEccCccCCCC--CCccccCCCCCCeEEccCccccccc-cccccccCCCCeEeCC
Q 042000 2 LVLSNNSLNGHMF-PRNFNLTNLRWLQLDGNHFVGE--NPQSLSKCSSLEGLYLNNNSLSGKI-PRWLGNLTRLNHIIMP 77 (249)
Q Consensus 2 l~l~~~~l~~~~~-~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~ 77 (249)
+.|.++....... .....|++++.||+++|-+... +......+++|+.|+++.|.+.... ...-..+++|+.|.++
T Consensus 126 IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~ 205 (505)
T KOG3207|consen 126 ISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLN 205 (505)
T ss_pred eeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEec
Confidence 3455665542221 2445899999999999966532 2233457999999999999875221 1222356788988888
Q ss_pred CCcCcCccceEEeccccccccCCCCCcCCCCCccEEEccCccccccCCCcchhhhcccchhcccceEEcccCeecccC-C
Q 042000 78 ENHLEGLIPILDISDNNISGRLPSCTFSNCSSLVTLDLSYNRINGSIPEWNIAYIYQGKVLSLLSGLDLSCNKLISHI-P 156 (249)
Q Consensus 78 ~~~~~~~~~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~ 156 (249)
.|+++.. .+.. ....+|.|+.|++.+|..... .......+..|++|++++|.+.+.. .
T Consensus 206 ~CGls~k-------------~V~~-~~~~fPsl~~L~L~~N~~~~~-------~~~~~~i~~~L~~LdLs~N~li~~~~~ 264 (505)
T KOG3207|consen 206 SCGLSWK-------------DVQW-ILLTFPSLEVLYLEANEIILI-------KATSTKILQTLQELDLSNNNLIDFDQG 264 (505)
T ss_pred cCCCCHH-------------HHHH-HHHhCCcHHHhhhhcccccce-------ecchhhhhhHHhhccccCCcccccccc
Confidence 8887732 2222 456778999999998852111 1112234667999999999876532 2
Q ss_pred cccCCCCCccEEeCCCCCCccC-Cchh-----ccCCcccCEEEeeCCcccCC-cChhhhcCCCccEEEcccccccc
Q 042000 157 PQIGNLTRIETLNLSHNNLTGS-IPST-----FSNLKHVESLDLSNNKLNGK-IPHQLVELKTLAIFSVAYNNLSG 225 (249)
Q Consensus 157 ~~l~~~~~L~~L~l~~~~~~~~-~~~~-----~~~~~~L~~l~l~~n~~~~~-~~~~~~~~~~L~~L~l~~n~l~~ 225 (249)
...+.++.|+.|+++.+.+... .|+. ...+++|+.|++..|++.+. ....+..+++|+.+.+..|.++.
T Consensus 265 ~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 265 YKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred cccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence 3467788999999999988732 2322 34678999999999998542 23445667888888888887763
No 35
>PLN03150 hypothetical protein; Provisional
Probab=99.05 E-value=4.5e-10 Score=96.25 Aligned_cols=109 Identities=28% Similarity=0.400 Sum_probs=81.1
Q ss_pred cccEEEccCccCCCCCCccccCCCCCCeEEccCccccccccccccccCCCCeEeCCCCcCcCccceEEeccccccccCCC
Q 042000 22 NLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPENHLEGLIPILDISDNNISGRLPS 101 (249)
Q Consensus 22 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~l~~~~~~~~~~~ 101 (249)
.++.|+++++.+.+..|..++++.+|+.|++++|.+.+.+|..+..+++|+.|++++|.+++ .+|.
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg--------------~iP~ 484 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNG--------------SIPE 484 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCC--------------CCch
Confidence 36778888888888888888888888888888888887888888888888888888887764 3333
Q ss_pred CCcCCCCCccEEEccCccccccCCCcchhhhcccchhcccceEEcccCee
Q 042000 102 CTFSNCSSLVTLDLSYNRINGSIPEWNIAYIYQGKVLSLLSGLDLSCNKL 151 (249)
Q Consensus 102 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 151 (249)
.+..+++|++|++++|.+.+.+|..... ...++..+++.+|..
T Consensus 485 -~l~~L~~L~~L~Ls~N~l~g~iP~~l~~------~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 485 -SLGQLTSLRILNLNGNSLSGRVPAALGG------RLLHRASFNFTDNAG 527 (623)
T ss_pred -HHhcCCCCCEEECcCCcccccCChHHhh------ccccCceEEecCCcc
Confidence 6777888888888888888877764211 123345677777653
No 36
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.03 E-value=2.5e-10 Score=67.17 Aligned_cols=60 Identities=33% Similarity=0.440 Sum_probs=42.8
Q ss_pred CcccEEEccCccCCCCCCccccCCCCCCeEEccCccccccccccccccCCCCeEeCCCCc
Q 042000 21 TNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPENH 80 (249)
Q Consensus 21 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 80 (249)
++|++|++++|++....+.+|.++++|++|++++|.+....+.+|..+++|++|++++|.
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 456777777777775555677777777777777777775656677777777777777765
No 37
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.00 E-value=3.6e-10 Score=66.44 Aligned_cols=59 Identities=42% Similarity=0.640 Sum_probs=28.6
Q ss_pred CccEEeCCCCCCccCCchhccCCcccCEEEeeCCcccCCcChhhhcCCCccEEEccccc
Q 042000 164 RIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLAIFSVAYNN 222 (249)
Q Consensus 164 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~ 222 (249)
+|++|++++|.++...+.+|..+++|++|++++|.+....++.+..+++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 34455555555543333444445555555555555544444444555555555555443
No 38
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.95 E-value=5e-11 Score=88.40 Aligned_cols=237 Identities=19% Similarity=0.189 Sum_probs=135.2
Q ss_pred eEeeccccCCCCCCCCC----CCCcccEEEccCccCC---CCCC-------ccccCCCCCCeEEccCccccccccccc--
Q 042000 2 LVLSNNSLNGHMFPRNF----NLTNLRWLQLDGNHFV---GENP-------QSLSKCSSLEGLYLNNNSLSGKIPRWL-- 65 (249)
Q Consensus 2 l~l~~~~l~~~~~~~~~----~~~~L~~L~l~~~~~~---~~~~-------~~~~~l~~L~~L~l~~~~~~~~~~~~~-- 65 (249)
++||||.|...-+..++ +-++|+..++++-... ..++ +++.+|++|+.+++++|.+....|+.+
T Consensus 35 vdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d 114 (388)
T COG5238 35 VDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEELGD 114 (388)
T ss_pred EeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccchHHHH
Confidence 56777766655454444 3356666666654222 1111 234567777777777777665444433
Q ss_pred --cccCCCCeEeCCCCcCcCccceEEeccccccccC---C-CCCcCCCCCccEEEccCccccccCCCcchhhhcccchhc
Q 042000 66 --GNLTRLNHIIMPENHLEGLIPILDISDNNISGRL---P-SCTFSNCSSLVTLDLSYNRINGSIPEWNIAYIYQGKVLS 139 (249)
Q Consensus 66 --~~l~~L~~L~l~~~~~~~~~~~l~l~~~~~~~~~---~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 139 (249)
...+.|.+|.+++|.+.+.- +.++...+ . ..-...-|.|++...+.|++. ..+......... .-.
T Consensus 115 ~is~~t~l~HL~l~NnGlGp~a------G~rigkal~~la~nKKaa~kp~Le~vicgrNRle-ngs~~~~a~~l~--sh~ 185 (388)
T COG5238 115 LISSSTDLVHLKLNNNGLGPIA------GGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE-NGSKELSAALLE--SHE 185 (388)
T ss_pred HHhcCCCceeEEeecCCCCccc------hhHHHHHHHHHHHHhhhccCCCceEEEeccchhc-cCcHHHHHHHHH--hhc
Confidence 34566777777777665331 11111000 0 002244577888888888765 222211111111 124
Q ss_pred ccceEEcccCeecccC-----CcccCCCCCccEEeCCCCCCcc----CCchhccCCcccCEEEeeCCcccCCcChhh---
Q 042000 140 LLSGLDLSCNKLISHI-----PPQIGNLTRIETLNLSHNNLTG----SIPSTFSNLKHVESLDLSNNKLNGKIPHQL--- 207 (249)
Q Consensus 140 ~L~~L~l~~~~~~~~~-----~~~l~~~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~--- 207 (249)
.|+.+.+..|.+.... ...+.-+.+|+.|++.+|.++. .+..++..++.|+.|.+.+|-++..+...+
T Consensus 186 ~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~ 265 (388)
T COG5238 186 NLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRR 265 (388)
T ss_pred CceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHH
Confidence 6888888888763321 1112345789999999998872 234566677788999999988775544332
Q ss_pred ---hcCCCccEEEccccccccCCChh--h-----hhhcccccccccCCcc
Q 042000 208 ---VELKTLAIFSVAYNNLSGEIPEW--T-----AQFATFNESSYEGNTF 247 (249)
Q Consensus 208 ---~~~~~L~~L~l~~n~l~~~~~~~--~-----~~~~~l~~l~l~~n~~ 247 (249)
...|+|+.|...+|.+.+.+... + ..+|.|..+.+.||.+
T Consensus 266 f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~ 315 (388)
T COG5238 266 FNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRI 315 (388)
T ss_pred hhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcc
Confidence 23488888888888776543222 1 2456666667777653
No 39
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.87 E-value=7.1e-10 Score=97.51 Aligned_cols=86 Identities=27% Similarity=0.301 Sum_probs=62.0
Q ss_pred CCCCCcccEEEccCccCCCCCCccccCCCCCCeEEccCccccccccccccccCCCCeEeCCCCcCcCccceEEecccccc
Q 042000 17 NFNLTNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPENHLEGLIPILDISDNNIS 96 (249)
Q Consensus 17 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~l~~~~~~ 96 (249)
|..++.|++||+++|.-.+..|..++.+.+||+|+++++.+. .+|..++++.+|.+|++..+....
T Consensus 567 f~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~------------- 632 (889)
T KOG4658|consen 567 FRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLE------------- 632 (889)
T ss_pred HhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccc-------------
Confidence 556888888888887655578888888888888888888887 788888888888888887655321
Q ss_pred ccCCCCCcCCCCCccEEEccCc
Q 042000 97 GRLPSCTFSNCSSLVTLDLSYN 118 (249)
Q Consensus 97 ~~~~~~~~~~l~~L~~L~l~~~ 118 (249)
.+ ......+.+||+|.+...
T Consensus 633 -~~-~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 633 -SI-PGILLELQSLRVLRLPRS 652 (889)
T ss_pred -cc-cchhhhcccccEEEeecc
Confidence 12 224455677777766544
No 40
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.84 E-value=6.2e-10 Score=83.99 Aligned_cols=193 Identities=25% Similarity=0.220 Sum_probs=114.9
Q ss_pred CCCCCCcccEEEccCccCCCCCCccccCCCCCCeEEccCccccccccccccccCCCCeEeCCC-CcCcC----------c
Q 042000 16 RNFNLTNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPE-NHLEG----------L 84 (249)
Q Consensus 16 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~----------~ 84 (249)
.+.-+++|+.+.++.|.-..+ .+....-+.|+++......++.. +.+-....+...--+. ....+ .
T Consensus 209 ~l~~f~~l~~~~~s~~~~~~i-~~~~~~kptl~t~~v~~s~~~~~--~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~ 285 (490)
T KOG1259|consen 209 NLNAFRNLKTLKFSALSTENI-VDIELLKPTLQTICVHNTTIQDV--PSLLPETILADPSGSEPSTSNGSALVSADTWQE 285 (490)
T ss_pred chHHhhhhheeeeeccchhhe-eceeecCchhheeeeeccccccc--ccccchhhhcCccCCCCCccCCceEEecchHhh
Confidence 344567888888888754321 12223446777877766544311 0110001110000000 00000 0
Q ss_pred cceEEeccccccccCCCCCcCCCCCccEEEccCccccccCCCcchhhhcccchhcccceEEcccCeecccCCcccCCCCC
Q 042000 85 IPILDISDNNISGRLPSCTFSNCSSLVTLDLSYNRINGSIPEWNIAYIYQGKVLSLLSGLDLSCNKLISHIPPQIGNLTR 164 (249)
Q Consensus 85 ~~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~ 164 (249)
++++|++.|.+. .+.. ..+-.|+++.|+++.|++.. +. ....+.+|+.||+++|.++. ...+-..+.+
T Consensus 286 LtelDLS~N~I~-~iDE-SvKL~Pkir~L~lS~N~i~~-v~--------nLa~L~~L~~LDLS~N~Ls~-~~Gwh~KLGN 353 (490)
T KOG1259|consen 286 LTELDLSGNLIT-QIDE-SVKLAPKLRRLILSQNRIRT-VQ--------NLAELPQLQLLDLSGNLLAE-CVGWHLKLGN 353 (490)
T ss_pred hhhccccccchh-hhhh-hhhhccceeEEeccccceee-eh--------hhhhcccceEeecccchhHh-hhhhHhhhcC
Confidence 223444444443 5554 66677899999999998762 11 12347788999999998754 4445566778
Q ss_pred ccEEeCCCCCCccCCchhccCCcccCEEEeeCCcccC-CcChhhhcCCCccEEEcccccccc
Q 042000 165 IETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNG-KIPHQLVELKTLAIFSVAYNNLSG 225 (249)
Q Consensus 165 L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~-~~~~~~~~~~~L~~L~l~~n~l~~ 225 (249)
.++|.+++|.+. ....++.+-+|..|++++|+|.. .-...++.+|-|+++.+.+|.+.+
T Consensus 354 IKtL~La~N~iE--~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 354 IKTLKLAQNKIE--TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred EeeeehhhhhHh--hhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 889999998887 22345566778889999998863 223456778888889999998874
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.75 E-value=9.7e-10 Score=90.13 Aligned_cols=188 Identities=27% Similarity=0.316 Sum_probs=94.0
Q ss_pred eeccccCCCCCCCCCCCCcccEEEccCccCCCCCCccccCCCCCCeEEccCccccccccccccccCCCCeEeCCCCcCcC
Q 042000 4 LSNNSLNGHMFPRNFNLTNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPENHLEG 83 (249)
Q Consensus 4 l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 83 (249)
+++|.+. .+-..+..+++++.+++.+|++... ...+..+++|++|++++|.++.. ..+..++.|+.|++.+|.+.
T Consensus 79 l~~n~i~-~~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~N~i~- 153 (414)
T KOG0531|consen 79 LRQNLIA-KILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLSGNLIS- 153 (414)
T ss_pred cchhhhh-hhhcccccccceeeeeccccchhhc-ccchhhhhcchheeccccccccc--cchhhccchhhheeccCcch-
Confidence 4455554 2334456667777777777777633 22256677777777777777633 34445566777777777666
Q ss_pred ccceEEeccccccccCCCCCcCCCCCccEEEccCccccccCCCcchhhhcccchhcccceEEcccCeecccCCcccCCCC
Q 042000 84 LIPILDISDNNISGRLPSCTFSNCSSLVTLDLSYNRINGSIPEWNIAYIYQGKVLSLLSGLDLSCNKLISHIPPQIGNLT 163 (249)
Q Consensus 84 ~~~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~ 163 (249)
.+. .+..+..|+.+++++|.+...-+. . ...+..++.+.+.+|.+... ..+..+.
T Consensus 154 --------------~~~--~~~~l~~L~~l~l~~n~i~~ie~~------~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~ 208 (414)
T KOG0531|consen 154 --------------DIS--GLESLKSLKLLDLSYNRIVDIEND------E-LSELISLEELDLGGNSIREI--EGLDLLK 208 (414)
T ss_pred --------------hcc--CCccchhhhcccCCcchhhhhhhh------h-hhhccchHHHhccCCchhcc--cchHHHH
Confidence 222 233456666677776665521110 0 12244555555655554321 2222223
Q ss_pred CccEEeCCCCCCccCCchhccCCc--ccCEEEeeCCcccCCcChhhhcCCCccEEEccccccc
Q 042000 164 RIETLNLSHNNLTGSIPSTFSNLK--HVESLDLSNNKLNGKIPHQLVELKTLAIFSVAYNNLS 224 (249)
Q Consensus 164 ~L~~L~l~~~~~~~~~~~~~~~~~--~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~ 224 (249)
.+..+++..|.+...-+ +.... +|+.+++++|++.. .+..+..+..+..+++..+.+.
T Consensus 209 ~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~~-~~~~~~~~~~l~~l~~~~n~~~ 268 (414)
T KOG0531|consen 209 KLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGNRISR-SPEGLENLKNLPVLDLSSNRIS 268 (414)
T ss_pred HHHHhhcccccceeccC--cccchhHHHHHHhcccCcccc-ccccccccccccccchhhcccc
Confidence 33333444444431111 01111 25555555555542 2233344455555555555443
No 42
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.72 E-value=5.7e-09 Score=91.97 Aligned_cols=79 Identities=27% Similarity=0.263 Sum_probs=68.2
Q ss_pred CeEeeccccCCCCCCCCCCCCcccEEEccCccCCCCCCccccCCCCCCeEEccCccccccccccccccCCCCeEeCCCCc
Q 042000 1 SLVLSNNSLNGHMFPRNFNLTNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPENH 80 (249)
Q Consensus 1 ~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 80 (249)
+|||++|.--+.+|..++++-+|++|++++..+. ..|..++++..|.+|++..+......+.....+.+|++|.+....
T Consensus 575 VLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 575 VLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred EEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence 5899998655689999999999999999999998 788999999999999999887654556777779999999987654
No 43
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.69 E-value=8.8e-10 Score=92.14 Aligned_cols=108 Identities=29% Similarity=0.357 Sum_probs=85.3
Q ss_pred hhcccceEEcccCeecccCCcccCCCCCccEEeCCCCCCccCCchhccCCcccCEEEeeCCcccCCcChhhhcCCCccEE
Q 042000 137 VLSLLSGLDLSCNKLISHIPPQIGNLTRIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLAIF 216 (249)
Q Consensus 137 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L 216 (249)
.++.++.|++++|.+++.. .+..++.|++||+++|.++ .+|..-..-.+|..|.+++|.++. + ..+.++.+|+.|
T Consensus 185 ll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrnN~l~t-L-~gie~LksL~~L 259 (1096)
T KOG1859|consen 185 LLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRNNALTT-L-RGIENLKSLYGL 259 (1096)
T ss_pred HHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhhhheeeeecccHHHh-h-hhHHhhhhhhcc
Confidence 3677899999999987653 6788999999999999998 566544444559999999999873 3 346789999999
Q ss_pred EccccccccCCC-hhhhhhcccccccccCCcccC
Q 042000 217 SVAYNNLSGEIP-EWTAQFATFNESSYEGNTFLC 249 (249)
Q Consensus 217 ~l~~n~l~~~~~-~~~~~~~~l~~l~l~~n~~~c 249 (249)
|+++|-+.+-.. .-+..+..|+.|.+.|||..|
T Consensus 260 DlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 260 DLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred chhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence 999998764311 224567889999999999887
No 44
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=1.2e-10 Score=87.56 Aligned_cols=180 Identities=21% Similarity=0.217 Sum_probs=112.3
Q ss_pred cccEEEccCccCCCC-CCccccCCCCCCeEEccCccccccccccccccCCCCeEeCCCCc-CcCccceEEeccccccccC
Q 042000 22 NLRWLQLDGNHFVGE-NPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPENH-LEGLIPILDISDNNISGRL 99 (249)
Q Consensus 22 ~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~l~l~~~~~~~~~ 99 (249)
.|+.||++...++.. .-..+..|.+|+.+.+.++.+.+.+...+.+-..|+.++++.+. ++. +..
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~---------n~~---- 252 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTE---------NAL---- 252 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccch---------hHH----
Confidence 467777777666532 12234467778888888877776666667777778877777653 221 000
Q ss_pred CCCCcCCCCCccEEEccCccccccCCCcchhhhcccchhcccceEEcccCeec--cc-CCcccCCCCCccEEeCCCCCCc
Q 042000 100 PSCTFSNCSSLVTLDLSYNRINGSIPEWNIAYIYQGKVLSLLSGLDLSCNKLI--SH-IPPQIGNLTRIETLNLSHNNLT 176 (249)
Q Consensus 100 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~~-~~~~l~~~~~L~~L~l~~~~~~ 176 (249)
.-.+.++..|..|++++|........ .... ..-+.|+.|+++|+... .. .......+++|.+|++++|...
T Consensus 253 -~ll~~scs~L~~LNlsWc~l~~~~Vt----v~V~-hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l 326 (419)
T KOG2120|consen 253 -QLLLSSCSRLDELNLSWCFLFTEKVT----VAVA-HISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVML 326 (419)
T ss_pred -HHHHHhhhhHhhcCchHhhccchhhh----HHHh-hhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeecccccccc
Confidence 11467788899999999886532211 1111 11356788888887531 11 1112345889999999988643
Q ss_pred -cCCchhccCCcccCEEEeeCCcccCCcChh---hhcCCCccEEEccccc
Q 042000 177 -GSIPSTFSNLKHVESLDLSNNKLNGKIPHQ---LVELKTLAIFSVAYNN 222 (249)
Q Consensus 177 -~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~---~~~~~~L~~L~l~~n~ 222 (249)
......+..++.|++++++.|..- .|+. +...|+|.+||+.++-
T Consensus 327 ~~~~~~~~~kf~~L~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 327 KNDCFQEFFKFNYLQHLSLSRCYDI--IPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred CchHHHHHHhcchheeeehhhhcCC--ChHHeeeeccCcceEEEEecccc
Confidence 333445667888999999888653 3332 3556888888888763
No 45
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.67 E-value=3.1e-09 Score=79.08 Aligned_cols=217 Identities=17% Similarity=0.122 Sum_probs=142.9
Q ss_pred CCCcccEEEccCccCCCCCC----ccccCCCCCCeEEccCcccc---c-------cccccccccCCCCeEeCCCCcCcCc
Q 042000 19 NLTNLRWLQLDGNHFVGENP----QSLSKCSSLEGLYLNNNSLS---G-------KIPRWLGNLTRLNHIIMPENHLEGL 84 (249)
Q Consensus 19 ~~~~L~~L~l~~~~~~~~~~----~~~~~l~~L~~L~l~~~~~~---~-------~~~~~~~~l~~L~~L~l~~~~~~~~ 84 (249)
.+..++.++++||.+..... ..+++-.+|+..+++.--.. + -+.+++-++++|+.+++++|.+...
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 46788999999999985433 33556678999988874221 1 2335666889999999999988754
Q ss_pred cceEEeccccccccCCCCCcCCCCCccEEEccCccccccCCCcch------hhhcccchhcccceEEcccCeecccCC--
Q 042000 85 IPILDISDNNISGRLPSCTFSNCSSLVTLDLSYNRINGSIPEWNI------AYIYQGKVLSLLSGLDLSCNKLISHIP-- 156 (249)
Q Consensus 85 ~~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~------~~~~~~~~~~~L~~L~l~~~~~~~~~~-- 156 (249)
.++ .+.. .+++-..|.+|.+.+|.+......... ........-+.|+...+..|++.....
T Consensus 108 ~~e----------~L~d-~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~ 176 (388)
T COG5238 108 FPE----------ELGD-LISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKEL 176 (388)
T ss_pred cch----------HHHH-HHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHH
Confidence 332 2222 566777899999999987522222111 111111223458888888888744211
Q ss_pred --cccCCCCCccEEeCCCCCCccCC-----chhccCCcccCEEEeeCCcccC----CcChhhhcCCCccEEEcccccccc
Q 042000 157 --PQIGNLTRIETLNLSHNNLTGSI-----PSTFSNLKHVESLDLSNNKLNG----KIPHQLVELKTLAIFSVAYNNLSG 225 (249)
Q Consensus 157 --~~l~~~~~L~~L~l~~~~~~~~~-----~~~~~~~~~L~~l~l~~n~~~~----~~~~~~~~~~~L~~L~l~~n~l~~ 225 (249)
..+..-.+|+++.+..|.|.... -..+.++.+|+.|++.+|.++- .+...++.++.|+.|.+..|.++.
T Consensus 177 ~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~ 256 (388)
T COG5238 177 SAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSN 256 (388)
T ss_pred HHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhcc
Confidence 11222358999999999987331 1233578999999999998863 456777888999999999999876
Q ss_pred CCChhh-h-----hhcccccccccCCc
Q 042000 226 EIPEWT-A-----QFATFNESSYEGNT 246 (249)
Q Consensus 226 ~~~~~~-~-----~~~~l~~l~l~~n~ 246 (249)
.....+ . ..++|..+.+.+|.
T Consensus 257 ~G~~~v~~~f~e~~~p~l~~L~~~Yne 283 (388)
T COG5238 257 EGVKSVLRRFNEKFVPNLMPLPGDYNE 283 (388)
T ss_pred ccHHHHHHHhhhhcCCCccccccchhh
Confidence 544332 2 34666666655553
No 46
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.65 E-value=1.5e-09 Score=88.95 Aligned_cols=192 Identities=30% Similarity=0.320 Sum_probs=103.7
Q ss_pred CCcccEEEccCccCCCCCCccccCCCCCCeEEccCccccccccccccccCCCCeEeCCCCcCcCccceEEeccccccccC
Q 042000 20 LTNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPENHLEGLIPILDISDNNISGRL 99 (249)
Q Consensus 20 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~l~~~~~~~~~ 99 (249)
+..++.+++..+.+.. ....+..+.+|+.+++.+|.+. .....+..+++|++|++++|.|. .+
T Consensus 71 l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~---------------~i 133 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKIT---------------KL 133 (414)
T ss_pred hHhHHhhccchhhhhh-hhcccccccceeeeeccccchh-hcccchhhhhcchheeccccccc---------------cc
Confidence 3444455555555442 2223455666777777777665 22222556667777777777666 22
Q ss_pred CCCCcCCCCCccEEEccCccccccCCCcchhhhcccchhcccceEEcccCeecccCC-cccCCCCCccEEeCCCCCCccC
Q 042000 100 PSCTFSNCSSLVTLDLSYNRINGSIPEWNIAYIYQGKVLSLLSGLDLSCNKLISHIP-PQIGNLTRIETLNLSHNNLTGS 178 (249)
Q Consensus 100 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~ 178 (249)
. .+..++.|+.|++.+|.+.. +. ....+..|+.+++++|++..... . ...+.+++.+.+.+|.+..
T Consensus 134 ~--~l~~l~~L~~L~l~~N~i~~-~~--------~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~- 200 (414)
T KOG0531|consen 134 E--GLSTLTLLKELNLSGNLISD-IS--------GLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE- 200 (414)
T ss_pred c--chhhccchhhheeccCcchh-cc--------CCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc-
Confidence 2 34455557777777777651 11 11225667777777777654322 1 3556677777777777762
Q ss_pred CchhccCCcccCEEEeeCCcccCCcChhhhcCC--CccEEEccccccccCCChhhhhhcccccccccCC
Q 042000 179 IPSTFSNLKHVESLDLSNNKLNGKIPHQLVELK--TLAIFSVAYNNLSGEIPEWTAQFATFNESSYEGN 245 (249)
Q Consensus 179 ~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~--~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~n 245 (249)
...+.....+..+++..|.+...-+ +.... .|+.+++++|.+.. .+..+..+..+..+++..|
T Consensus 201 -i~~~~~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~~-~~~~~~~~~~l~~l~~~~n 265 (414)
T KOG0531|consen 201 -IEGLDLLKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGNRISR-SPEGLENLKNLPVLDLSSN 265 (414)
T ss_pred -ccchHHHHHHHHhhcccccceeccC--cccchhHHHHHHhcccCcccc-ccccccccccccccchhhc
Confidence 2223334444445666666653211 11122 37788888887763 3233444455555554443
No 47
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.62 E-value=9.4e-09 Score=77.54 Aligned_cols=210 Identities=19% Similarity=0.135 Sum_probs=109.5
Q ss_pred CCCCCcccEEEccCccCCCC-CCcccc-CCCCCCeEEccCcccccc--ccccccccCCCCeEeCCCCcCcCccceEEecc
Q 042000 17 NFNLTNLRWLQLDGNHFVGE-NPQSLS-KCSSLEGLYLNNNSLSGK--IPRWLGNLTRLNHIIMPENHLEGLIPILDISD 92 (249)
Q Consensus 17 ~~~~~~L~~L~l~~~~~~~~-~~~~~~-~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~l~l~~ 92 (249)
++..+.++.+.+-++.+... ....|+ .+..++.+++.+|.+++. +...+.+++.|++|+++.|.++..+.
T Consensus 41 v~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~------ 114 (418)
T KOG2982|consen 41 VSSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIK------ 114 (418)
T ss_pred eccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccc------
Confidence 33334444555555555422 112233 456777888888877632 23345677888888888887764332
Q ss_pred ccccccCCCCCcCCCCCccEEEccCccccccCCCcchhhhcccchhcccceEEcccCeecccCC--cccCC-CCCccEEe
Q 042000 93 NNISGRLPSCTFSNCSSLVTLDLSYNRINGSIPEWNIAYIYQGKVLSLLSGLDLSCNKLISHIP--PQIGN-LTRIETLN 169 (249)
Q Consensus 93 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~l~~-~~~L~~L~ 169 (249)
..| ....+|+++.+.+..+.++..+... ..++.+++|.++.|.+..... .-... .+.+.++.
T Consensus 115 -----~lp----~p~~nl~~lVLNgT~L~w~~~~s~l------~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh 179 (418)
T KOG2982|consen 115 -----SLP----LPLKNLRVLVLNGTGLSWTQSTSSL------DDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLH 179 (418)
T ss_pred -----cCc----ccccceEEEEEcCCCCChhhhhhhh------hcchhhhhhhhccchhhhhccccccccccchhhhhhh
Confidence 111 1334667777766665543322111 113345555555553321100 00111 13555566
Q ss_pred CCCCCCcc--CCchhccCCcccCEEEeeCCcccCC-cChhhhcCCCccEEEccccccccC-CChhhhhhcccccccccCC
Q 042000 170 LSHNNLTG--SIPSTFSNLKHVESLDLSNNKLNGK-IPHQLVELKTLAIFSVAYNNLSGE-IPEWTAQFATFNESSYEGN 245 (249)
Q Consensus 170 l~~~~~~~--~~~~~~~~~~~L~~l~l~~n~~~~~-~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~~~~l~~l~l~~n 245 (249)
...|.... ..-.....++++..+-+..|++.+. -.+..+..+.+..|+++.+++... ....+.+++++..+++..|
T Consensus 180 ~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~ 259 (418)
T KOG2982|consen 180 QLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSEN 259 (418)
T ss_pred cCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCC
Confidence 55555431 1111223456677777777766542 233445556666777777766532 2344567777777777777
Q ss_pred cc
Q 042000 246 TF 247 (249)
Q Consensus 246 ~~ 247 (249)
|.
T Consensus 260 Pl 261 (418)
T KOG2982|consen 260 PL 261 (418)
T ss_pred cc
Confidence 64
No 48
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.51 E-value=1.6e-08 Score=76.31 Aligned_cols=184 Identities=18% Similarity=0.247 Sum_probs=100.1
Q ss_pred CCCcccEEEccCccCCCC--CCccccCCCCCCeEEccCccccccccccc-cccCCCCeEeCCCCcCcCccceEEeccccc
Q 042000 19 NLTNLRWLQLDGNHFVGE--NPQSLSKCSSLEGLYLNNNSLSGKIPRWL-GNLTRLNHIIMPENHLEGLIPILDISDNNI 95 (249)
Q Consensus 19 ~~~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~l~l~~~~~ 95 (249)
.+..++++|+.+|.++.. +...+.++|+|++|++++|.+...+ ..+ ....+|++|.+.++.+...
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I-~~lp~p~~nl~~lVLNgT~L~w~----------- 136 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDI-KSLPLPLKNLRVLVLNGTGLSWT----------- 136 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcc-ccCcccccceEEEEEcCCCCChh-----------
Confidence 567788888888887642 2233457888888888888765211 222 2455777777777654422
Q ss_pred cccCCCCCcCCCCCccEEEccCccccccCC------Ccc---------------h-hhhcccchhcccceEEcccCeecc
Q 042000 96 SGRLPSCTFSNCSSLVTLDLSYNRINGSIP------EWN---------------I-AYIYQGKVLSLLSGLDLSCNKLIS 153 (249)
Q Consensus 96 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~------~~~---------------~-~~~~~~~~~~~L~~L~l~~~~~~~ 153 (249)
.... .+..+|.+++|.++.|....... ++. + ......+.++++..+.+..|.+.+
T Consensus 137 --~~~s-~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~ 213 (418)
T KOG2982|consen 137 --QSTS-SLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKT 213 (418)
T ss_pred --hhhh-hhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccc
Confidence 1111 34445555555555542221000 000 0 000011234556666666665533
Q ss_pred c-CCcccCCCCCccEEeCCCCCCccC-CchhccCCcccCEEEeeCCcccCCcChh------hhcCCCccEEE
Q 042000 154 H-IPPQIGNLTRIETLNLSHNNLTGS-IPSTFSNLKHVESLDLSNNKLNGKIPHQ------LVELKTLAIFS 217 (249)
Q Consensus 154 ~-~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~l~l~~n~~~~~~~~~------~~~~~~L~~L~ 217 (249)
. ..+....++.+--|+++.+++... ..+++..++.|..+.++++++.+.+... +..+++++.|+
T Consensus 214 ~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLN 285 (418)
T KOG2982|consen 214 ESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLN 285 (418)
T ss_pred hhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEec
Confidence 2 223344556666778888877632 2356677888888888888887644321 23355566554
No 49
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=2.2e-09 Score=80.88 Aligned_cols=178 Identities=20% Similarity=0.211 Sum_probs=109.7
Q ss_pred CCCeEEccCcccc-ccccccccccCCCCeEeCCCCcCcCccceEEeccccccccCCCCCcCCCCCccEEEccCccccccC
Q 042000 46 SLEGLYLNNNSLS-GKIPRWLGNLTRLNHIIMPENHLEGLIPILDISDNNISGRLPSCTFSNCSSLVTLDLSYNRINGSI 124 (249)
Q Consensus 46 ~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 124 (249)
.||++|++...++ ......+..+.+|+.|.+.++.+.. .+.. .+..-..|+.++++.+.= +
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD--------------~I~~-~iAkN~~L~~lnlsm~sG---~ 247 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDD--------------PIVN-TIAKNSNLVRLNLSMCSG---F 247 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCc--------------HHHH-HHhccccceeeccccccc---c
Confidence 3666666665443 1222344455666666666555442 2222 455667888888887651 1
Q ss_pred CCcchhhhcccchhcccceEEcccCeecccCC-cccCC-CCCccEEeCCCCCCc---cCCchhccCCcccCEEEeeCCcc
Q 042000 125 PEWNIAYIYQGKVLSLLSGLDLSCNKLISHIP-PQIGN-LTRIETLNLSHNNLT---GSIPSTFSNLKHVESLDLSNNKL 199 (249)
Q Consensus 125 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~-~~~L~~L~l~~~~~~---~~~~~~~~~~~~L~~l~l~~n~~ 199 (249)
.+.....+ ...+..|..|+++.|...+..- ..+.+ -++|+.|+++++... ..+......++++.+|++++|..
T Consensus 248 t~n~~~ll--~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~ 325 (419)
T KOG2120|consen 248 TENALQLL--LSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVM 325 (419)
T ss_pred chhHHHHH--HHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccc
Confidence 12222222 2347778889999887644221 11122 268889999988643 12233446789999999999844
Q ss_pred -cCCcChhhhcCCCccEEEccccccccCCChh---hhhhcccccccccCC
Q 042000 200 -NGKIPHQLVELKTLAIFSVAYNNLSGEIPEW---TAQFATFNESSYEGN 245 (249)
Q Consensus 200 -~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~---~~~~~~l~~l~l~~n 245 (249)
+...-..+-+++.|+++.++.|..- +|.. +.+.|++.++++.|+
T Consensus 326 l~~~~~~~~~kf~~L~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 326 LKNDCFQEFFKFNYLQHLSLSRCYDI--IPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred cCchHHHHHHhcchheeeehhhhcCC--ChHHeeeeccCcceEEEEeccc
Confidence 4444566778899999999999754 3443 356688888888775
No 50
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.10 E-value=3.4e-07 Score=61.41 Aligned_cols=89 Identities=25% Similarity=0.293 Sum_probs=59.7
Q ss_pred cccceEEcccCeecccCCcccCCCCCccEEeCCCCCCccCCchhccCCcccCEEEeeCCcccCCcChhhhcCCCccEEEc
Q 042000 139 SLLSGLDLSCNKLISHIPPQIGNLTRIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLAIFSV 218 (249)
Q Consensus 139 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~l 218 (249)
..|+..++++|.+.+..+.....++..+.+++++|.+. .+|..+..++.|+.++++.|++. ..|..+-.+.++..|+.
T Consensus 53 ~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds 130 (177)
T KOG4579|consen 53 YELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDS 130 (177)
T ss_pred ceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcC
Confidence 45667777777765533333334567777777777777 56666777777788888777776 66666666777777777
Q ss_pred cccccccCCChh
Q 042000 219 AYNNLSGEIPEW 230 (249)
Q Consensus 219 ~~n~l~~~~~~~ 230 (249)
.+|... .+|..
T Consensus 131 ~~na~~-eid~d 141 (177)
T KOG4579|consen 131 PENARA-EIDVD 141 (177)
T ss_pred CCCccc-cCcHH
Confidence 777665 34443
No 51
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.07 E-value=3.9e-05 Score=61.84 Aligned_cols=55 Identities=11% Similarity=0.079 Sum_probs=33.6
Q ss_pred CCCcccEEEccCccCCCCCCccccCCCCCCeEEccCccccccccccccccCCCCeEeCCCC
Q 042000 19 NLTNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPEN 79 (249)
Q Consensus 19 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 79 (249)
.+++++.|++++|.+. ..|. -..+|++|.+++|.....+|..+. .+|++|.+.+|
T Consensus 50 ~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~C 104 (426)
T PRK15386 50 EARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHC 104 (426)
T ss_pred HhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCc
Confidence 3677788888888665 3341 223578888877544334444332 46777777766
No 52
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.06 E-value=3e-07 Score=77.53 Aligned_cols=102 Identities=26% Similarity=0.381 Sum_probs=77.7
Q ss_pred hcccceEEcccCeecccCCcccCCCCCccEEeCCCCCCccCCchhccCCcccCEEEeeCCcccCCcChh-hhcCCCccEE
Q 042000 138 LSLLSGLDLSCNKLISHIPPQIGNLTRIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQ-LVELKTLAIF 216 (249)
Q Consensus 138 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~-~~~~~~L~~L 216 (249)
...|...++++|.++. +-+.+.-++.++.|+++.|+++. .. .+..+++|++|++++|.+. ..|.. ..++. |+.|
T Consensus 163 Wn~L~~a~fsyN~L~~-mD~SLqll~ale~LnLshNk~~~-v~-~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L 237 (1096)
T KOG1859|consen 163 WNKLATASFSYNRLVL-MDESLQLLPALESLNLSHNKFTK-VD-NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLL 237 (1096)
T ss_pred hhhHhhhhcchhhHHh-HHHHHHHHHHhhhhccchhhhhh-hH-HHHhcccccccccccchhc-cccccchhhhh-heee
Confidence 3446667777787643 55566667899999999999983 33 7888999999999999887 34433 33344 9999
Q ss_pred EccccccccCCChhhhhhcccccccccCCc
Q 042000 217 SVAYNNLSGEIPEWTAQFATFNESSYEGNT 246 (249)
Q Consensus 217 ~l~~n~l~~~~~~~~~~~~~l~~l~l~~n~ 246 (249)
.+++|.++. -..+.++.+|+.|+++.|-
T Consensus 238 ~lrnN~l~t--L~gie~LksL~~LDlsyNl 265 (1096)
T KOG1859|consen 238 NLRNNALTT--LRGIENLKSLYGLDLSYNL 265 (1096)
T ss_pred eecccHHHh--hhhHHhhhhhhccchhHhh
Confidence 999999983 3447889999999999885
No 53
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.06 E-value=1.2e-06 Score=75.62 Aligned_cols=129 Identities=19% Similarity=0.204 Sum_probs=84.6
Q ss_pred cCCCCCccEEEccCccccccCCCcchhhhcccchhcccceEEcccCeecccCCcccCCCCCccEEeCCCCCCcc-CCchh
Q 042000 104 FSNCSSLVTLDLSYNRINGSIPEWNIAYIYQGKVLSLLSGLDLSCNKLISHIPPQIGNLTRIETLNLSHNNLTG-SIPST 182 (249)
Q Consensus 104 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~ 182 (249)
-..+|.|+.|.+.+-.+.. + ........+++|..||++++.++.. ..++.+++|+.|.+.+-.+.. ..-..
T Consensus 144 g~~LPsL~sL~i~~~~~~~---~---dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~ 215 (699)
T KOG3665|consen 144 GTMLPSLRSLVISGRQFDN---D---DFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLID 215 (699)
T ss_pred hhhCcccceEEecCceecc---h---hHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHH
Confidence 3456889999988866531 1 1222334588899999999887654 557778899998888877762 22234
Q ss_pred ccCCcccCEEEeeCCcccCCc--C----hhhhcCCCccEEEccccccccCCChhh-hhhcccccc
Q 042000 183 FSNLKHVESLDLSNNKLNGKI--P----HQLVELKTLAIFSVAYNNLSGEIPEWT-AQFATFNES 240 (249)
Q Consensus 183 ~~~~~~L~~l~l~~n~~~~~~--~----~~~~~~~~L~~L~l~~n~l~~~~~~~~-~~~~~l~~l 240 (249)
+..+.+|+.||+|..+..... . +.-..+|+|+.||+++..+.+..-+.+ ...++|+.+
T Consensus 216 LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i 280 (699)
T KOG3665|consen 216 LFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQI 280 (699)
T ss_pred HhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhh
Confidence 557899999999987654321 1 112337899999999887775543333 344444443
No 54
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.04 E-value=5.9e-07 Score=60.31 Aligned_cols=79 Identities=20% Similarity=0.427 Sum_probs=38.4
Q ss_pred CCccEEeCCCCCCccCCchhc-cCCcccCEEEeeCCcccCCcChhhhcCCCccEEEccccccccCCChhhhhhccccccc
Q 042000 163 TRIETLNLSHNNLTGSIPSTF-SNLKHVESLDLSNNKLNGKIPHQLVELKTLAIFSVAYNNLSGEIPEWTAQFATFNESS 241 (249)
Q Consensus 163 ~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~ 241 (249)
..|+.+++++|.+. .+|..| ..++.+..+++++|.+. ..|..+..++.|+.++++.|.+. ..|+.+..+-++-.|+
T Consensus 53 ~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 53 YELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLD 129 (177)
T ss_pred ceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhc
Confidence 34455555555555 233333 23345555555555555 34444555555555555555555 3444444444444444
Q ss_pred ccC
Q 042000 242 YEG 244 (249)
Q Consensus 242 l~~ 244 (249)
..+
T Consensus 130 s~~ 132 (177)
T KOG4579|consen 130 SPE 132 (177)
T ss_pred CCC
Confidence 333
No 55
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.00 E-value=9.4e-06 Score=43.79 Aligned_cols=36 Identities=36% Similarity=0.640 Sum_probs=17.8
Q ss_pred ccCEEEeeCCcccCCcChhhhcCCCccEEEccccccc
Q 042000 188 HVESLDLSNNKLNGKIPHQLVELKTLAIFSVAYNNLS 224 (249)
Q Consensus 188 ~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~ 224 (249)
+|++|++++|.+. .++..+..+++|+.|++++|.++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4555555555555 33434555555555555555554
No 56
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.99 E-value=1.9e-07 Score=73.59 Aligned_cols=62 Identities=21% Similarity=0.242 Sum_probs=34.4
Q ss_pred CCCcccEEEccCcc-CCCCCCcccc-CCCCCCeEEccCcc-ccccccc-cccccCCCCeEeCCCCc
Q 042000 19 NLTNLRWLQLDGNH-FVGENPQSLS-KCSSLEGLYLNNNS-LSGKIPR-WLGNLTRLNHIIMPENH 80 (249)
Q Consensus 19 ~~~~L~~L~l~~~~-~~~~~~~~~~-~l~~L~~L~l~~~~-~~~~~~~-~~~~l~~L~~L~l~~~~ 80 (249)
+|++++.|++.+|. ++...-..++ .+++|+++++..|. ++....+ ....+++|++++++.++
T Consensus 162 ~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~ 227 (483)
T KOG4341|consen 162 NCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCP 227 (483)
T ss_pred hCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCc
Confidence 67888888887774 3322222232 46777777777743 2222222 22356677777766543
No 57
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.97 E-value=1.2e-05 Score=43.40 Aligned_cols=37 Identities=43% Similarity=0.756 Sum_probs=24.9
Q ss_pred CCccEEeCCCCCCccCCchhccCCcccCEEEeeCCccc
Q 042000 163 TRIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLN 200 (249)
Q Consensus 163 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~ 200 (249)
++|++|++++|+++ .+|..+..+++|+.|++++|+++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 35777777777777 45555677777777777777776
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.89 E-value=2.4e-05 Score=56.22 Aligned_cols=109 Identities=23% Similarity=0.256 Sum_probs=70.6
Q ss_pred CcccEEEccCccCCCCCCccccCCCCCCeEEccCccccccccccccccCCCCeEeCCCCcCcCccceEEeccccccccCC
Q 042000 21 TNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPENHLEGLIPILDISDNNISGRLP 100 (249)
Q Consensus 21 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~l~~~~~~~~~~ 100 (249)
.....+|+++|.+.. -..|..++.|++|.+.+|.++...|.--..+++|..|.+.+|.+.. +.
T Consensus 42 d~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~---------------l~ 104 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQE---------------LG 104 (233)
T ss_pred cccceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhh---------------hh
Confidence 355678888887752 2346678888888888888885555554566778888888887762 22
Q ss_pred C-CCcCCCCCccEEEccCccccccCCCcchhhhcccchhcccceEEcccCe
Q 042000 101 S-CTFSNCSSLVTLDLSYNRINGSIPEWNIAYIYQGKVLSLLSGLDLSCNK 150 (249)
Q Consensus 101 ~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 150 (249)
+ .-+..+|+|++|.+-+|.+...-.-. . .....+++|+.||...-.
T Consensus 105 dl~pLa~~p~L~~Ltll~Npv~~k~~YR---~-yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 105 DLDPLASCPKLEYLTLLGNPVEHKKNYR---L-YVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred hcchhccCCccceeeecCCchhcccCce---e-EEEEecCcceEeehhhhh
Confidence 1 24567788888888888776321111 0 111236678888876654
No 59
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.84 E-value=4.1e-06 Score=72.48 Aligned_cols=134 Identities=16% Similarity=0.223 Sum_probs=63.8
Q ss_pred CcccEEEccCccCCCCC-Ccccc-CCCCCCeEEccCcccc-ccccccccccCCCCeEeCCCCcCcCccceEEeccccccc
Q 042000 21 TNLRWLQLDGNHFVGEN-PQSLS-KCSSLEGLYLNNNSLS-GKIPRWLGNLTRLNHIIMPENHLEGLIPILDISDNNISG 97 (249)
Q Consensus 21 ~~L~~L~l~~~~~~~~~-~~~~~-~l~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~l~~~~~~~ 97 (249)
.+|+.|+++|....... +..++ .+|.|+.|.+.+-.+. +.+.....++++|..||+++++++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~--------------- 186 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS--------------- 186 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc---------------
Confidence 45666677665332121 12233 4567777776664432 122333445666777666666655
Q ss_pred cCCCCCcCCCCCccEEEccCccccccCCCcchhhhcccchhcccceEEcccCeecccC------CcccCCCCCccEEeCC
Q 042000 98 RLPSCTFSNCSSLVTLDLSYNRINGSIPEWNIAYIYQGKVLSLLSGLDLSCNKLISHI------PPQIGNLTRIETLNLS 171 (249)
Q Consensus 98 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~------~~~l~~~~~L~~L~l~ 171 (249)
.+. .++.+++|+.|.+.+-.+.. ...+...-.+++|+.||+|........ .+.-..+|+|+.||.+
T Consensus 187 nl~--GIS~LknLq~L~mrnLe~e~------~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcS 258 (699)
T KOG3665|consen 187 NLS--GISRLKNLQVLSMRNLEFES------YQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCS 258 (699)
T ss_pred CcH--HHhccccHHHHhccCCCCCc------hhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecC
Confidence 221 34555556655555443321 011111122555666666654432211 0111225566666666
Q ss_pred CCCCcc
Q 042000 172 HNNLTG 177 (249)
Q Consensus 172 ~~~~~~ 177 (249)
+..+..
T Consensus 259 gTdi~~ 264 (699)
T KOG3665|consen 259 GTDINE 264 (699)
T ss_pred CcchhH
Confidence 666553
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.63 E-value=7.3e-05 Score=53.77 Aligned_cols=105 Identities=20% Similarity=0.231 Sum_probs=76.3
Q ss_pred hcccceEEcccCeecccCCcccCCCCCccEEeCCCCCCccCCchhccCCcccCEEEeeCCcccCCc-ChhhhcCCCccEE
Q 042000 138 LSLLSGLDLSCNKLISHIPPQIGNLTRIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKI-PHQLVELKTLAIF 216 (249)
Q Consensus 138 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~-~~~~~~~~~L~~L 216 (249)
..+...+|+++|.+.. ...|..++.|..|.+.+|.|+...|..-.-+++|..|.+.+|.+.+.. .+.+..+|.|+.|
T Consensus 41 ~d~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL 118 (233)
T ss_pred ccccceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence 4456778888888643 356778889999999999998666665566788999999999886421 2345677899999
Q ss_pred EccccccccCC---ChhhhhhcccccccccC
Q 042000 217 SVAYNNLSGEI---PEWTAQFATFNESSYEG 244 (249)
Q Consensus 217 ~l~~n~l~~~~---~~~~~~~~~l~~l~l~~ 244 (249)
.+-+|.++..- --.+..+|+++.+++.+
T Consensus 119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred eecCCchhcccCceeEEEEecCcceEeehhh
Confidence 99998887331 12345678888887764
No 61
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.61 E-value=0.00019 Score=57.93 Aligned_cols=119 Identities=14% Similarity=0.271 Sum_probs=67.3
Q ss_pred ccccCCCCeEeCCCCcCcCccceEEeccccccccCCCCCcCCC-CCccEEEccCccccccCCCcchhhhcccchhcccce
Q 042000 65 LGNLTRLNHIIMPENHLEGLIPILDISDNNISGRLPSCTFSNC-SSLVTLDLSYNRINGSIPEWNIAYIYQGKVLSLLSG 143 (249)
Q Consensus 65 ~~~l~~L~~L~l~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 143 (249)
+..+.+++.|++++|.+. .+| .+ ++|++|.+++|.....+|+ ..+.+|++
T Consensus 48 ~~~~~~l~~L~Is~c~L~---------------sLP-----~LP~sLtsL~Lsnc~nLtsLP~---------~LP~nLe~ 98 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE---------------SLP-----VLPNELTEITIENCNNLTTLPG---------SIPEGLEK 98 (426)
T ss_pred HHHhcCCCEEEeCCCCCc---------------ccC-----CCCCCCcEEEccCCCCcccCCc---------hhhhhhhh
Confidence 445788888888888666 444 23 3699999998765444443 12467999
Q ss_pred EEcccCeecccCCcccCCCCCccEEeCCCCCCc--cCCchhccC------------------CcccCEEEeeCCcccCCc
Q 042000 144 LDLSCNKLISHIPPQIGNLTRIETLNLSHNNLT--GSIPSTFSN------------------LKHVESLDLSNNKLNGKI 203 (249)
Q Consensus 144 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~--~~~~~~~~~------------------~~~L~~l~l~~n~~~~~~ 203 (249)
|++++|......| ..|+.|++..+... +.+|..+.. .++|++|++++|... ..
T Consensus 99 L~Ls~Cs~L~sLP------~sLe~L~L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i-~L 171 (426)
T PRK15386 99 LTVCHCPEISGLP------ESVRSLEIKGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNI-IL 171 (426)
T ss_pred eEccCcccccccc------cccceEEeCCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCcc-cC
Confidence 9999884222233 35666666554432 123322211 135666666666544 23
Q ss_pred ChhhhcCCCccEEEcccc
Q 042000 204 PHQLVELKTLAIFSVAYN 221 (249)
Q Consensus 204 ~~~~~~~~~L~~L~l~~n 221 (249)
|+.+. .+|+.|+++.+
T Consensus 172 P~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 172 PEKLP--ESLQSITLHIE 187 (426)
T ss_pred ccccc--ccCcEEEeccc
Confidence 33222 46666666554
No 62
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.45 E-value=0.0011 Score=45.05 Aligned_cols=38 Identities=26% Similarity=0.406 Sum_probs=13.3
Q ss_pred cccCCCCCCeEEccCccccccccccccccCCCCeEeCCC
Q 042000 40 SLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPE 78 (249)
Q Consensus 40 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 78 (249)
+|.++.+|+.+.+.. .+......+|..+++++.+.+..
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~ 44 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPN 44 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESS
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhcccccccccccccc
Confidence 344444555555543 23323333444444455544443
No 63
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.34 E-value=0.0011 Score=45.05 Aligned_cols=86 Identities=24% Similarity=0.415 Sum_probs=50.8
Q ss_pred CCCCCCCCcccEEEccCccCCCCCCccccCCCCCCeEEccCccccccccccccccCCCCeEeCCCCcCcCccceEEeccc
Q 042000 14 FPRNFNLTNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPENHLEGLIPILDISDN 93 (249)
Q Consensus 14 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~l~~~ 93 (249)
...|.++.+|+.+.+.. .+......+|.++.+|+.+.+.++ +......+|..+.+++.+.+.. .+.
T Consensus 5 ~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~----------- 70 (129)
T PF13306_consen 5 NNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK----------- 70 (129)
T ss_dssp TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT------------
T ss_pred HHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccc-----------
Confidence 45677888999999985 455455677888989999999875 5545556777777888888754 222
Q ss_pred cccccCCCCCcCCCCCccEEEccC
Q 042000 94 NISGRLPSCTFSNCSSLVTLDLSY 117 (249)
Q Consensus 94 ~~~~~~~~~~~~~l~~L~~L~l~~ 117 (249)
.++...+..+.+++.+.+..
T Consensus 71 ----~i~~~~F~~~~~l~~i~~~~ 90 (129)
T PF13306_consen 71 ----SIGDNAFSNCTNLKNIDIPS 90 (129)
T ss_dssp ----EE-TTTTTT-TTECEEEETT
T ss_pred ----ccccccccccccccccccCc
Confidence 33344666677777777654
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.30 E-value=0.00025 Score=52.99 Aligned_cols=39 Identities=28% Similarity=0.359 Sum_probs=19.2
Q ss_pred hcccceEEcccC--eecccCCcccCCCCCccEEeCCCCCCc
Q 042000 138 LSLLSGLDLSCN--KLISHIPPQIGNLTRIETLNLSHNNLT 176 (249)
Q Consensus 138 ~~~L~~L~l~~~--~~~~~~~~~l~~~~~L~~L~l~~~~~~ 176 (249)
+++|++|+++.| +....+......+++|+++++++|.+.
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred cchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 445555666555 333323222333455555555555554
No 65
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.03 E-value=7e-05 Score=59.59 Aligned_cols=132 Identities=22% Similarity=0.275 Sum_probs=75.5
Q ss_pred CCCCCccEEEccCccccccCCCcchhhhcccchhcccceEEcccCeeccc--CCcccCCCCCccEEeCCCCCCccCC---
Q 042000 105 SNCSSLVTLDLSYNRINGSIPEWNIAYIYQGKVLSLLSGLDLSCNKLISH--IPPQIGNLTRIETLNLSHNNLTGSI--- 179 (249)
Q Consensus 105 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~l~~~~~L~~L~l~~~~~~~~~--- 179 (249)
.+..+|+++.+..|+... +..+.. -....+.|+.+++.++..... ....-.+++.|+++.++.|......
T Consensus 317 ~~~~~L~~l~l~~c~~fs---d~~ft~--l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~ 391 (483)
T KOG4341|consen 317 QHCHNLQVLELSGCQQFS---DRGFTM--LGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIR 391 (483)
T ss_pred cCCCceEEEeccccchhh---hhhhhh--hhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhh
Confidence 345678888887776321 111111 123356677777777654322 1222235788888888877543111
Q ss_pred --chhccCCcccCEEEeeCCccc-CCcChhhhcCCCccEEEccccc-cccCCCh-hhhhhccccccc
Q 042000 180 --PSTFSNLKHVESLDLSNNKLN-GKIPHQLVELKTLAIFSVAYNN-LSGEIPE-WTAQFATFNESS 241 (249)
Q Consensus 180 --~~~~~~~~~L~~l~l~~n~~~-~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~-~~~~~~~l~~l~ 241 (249)
...-.....++.+.+++++.. +...+.+..+++|+++++-.++ ++....+ ...++|+++...
T Consensus 392 ~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a 458 (483)
T KOG4341|consen 392 HLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHA 458 (483)
T ss_pred hhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceehh
Confidence 122235567788888888553 4556667778888888888874 4433222 234666665443
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.95 E-value=4.1e-05 Score=57.81 Aligned_cols=99 Identities=25% Similarity=0.261 Sum_probs=70.1
Q ss_pred CCCccEEEccCccccccCCCcchhhhcccchhcccceEEcccCeecccCCcccCCCCCccEEeCCCCCCccCCc--hhcc
Q 042000 107 CSSLVTLDLSYNRINGSIPEWNIAYIYQGKVLSLLSGLDLSCNKLISHIPPQIGNLTRIETLNLSHNNLTGSIP--STFS 184 (249)
Q Consensus 107 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~--~~~~ 184 (249)
+.+.+.|+..+|.+. .+.....++.|+.|.++-|.++.. ..+..|++|++|++..|.|. .+. .-+.
T Consensus 18 l~~vkKLNcwg~~L~---------DIsic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~-sldEL~YLk 85 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLD---------DISICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIE-SLDELEYLK 85 (388)
T ss_pred HHHhhhhcccCCCcc---------HHHHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccc-cHHHHHHHh
Confidence 445677777777765 112223477788888888887654 34677899999999999988 343 3446
Q ss_pred CCcccCEEEeeCCcccCCcC-----hhhhcCCCccEEE
Q 042000 185 NLKHVESLDLSNNKLNGKIP-----HQLVELKTLAIFS 217 (249)
Q Consensus 185 ~~~~L~~l~l~~n~~~~~~~-----~~~~~~~~L~~L~ 217 (249)
++++|+.|++..|+=.+..+ ..+.-+|+|+.||
T Consensus 86 nlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 86 NLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred cCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 88999999999987765444 3455678888886
No 67
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.76 E-value=0.00037 Score=58.50 Aligned_cols=61 Identities=21% Similarity=0.185 Sum_probs=29.7
Q ss_pred CCcccEEEccCccCCCC--CCccccCCCCCCeEEccCc-ccccc----ccccccccCCCCeEeCCCCc
Q 042000 20 LTNLRWLQLDGNHFVGE--NPQSLSKCSSLEGLYLNNN-SLSGK----IPRWLGNLTRLNHIIMPENH 80 (249)
Q Consensus 20 ~~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~-~~~~~----~~~~~~~l~~L~~L~l~~~~ 80 (249)
++.|+.+.+.++.-... .......++.|+.++++++ ..... .......+++|+.+++..+.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~ 254 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCG 254 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhh
Confidence 56666666666633222 1122345667777777652 11100 11122344566666666554
No 68
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.37 E-value=0.0035 Score=47.11 Aligned_cols=102 Identities=18% Similarity=0.206 Sum_probs=68.6
Q ss_pred hcccceEEcccCeecccCCcccCCCCCccEEeCCCC--CCccCCchhccCCcccCEEEeeCCcccCC-cChhhhcCCCcc
Q 042000 138 LSLLSGLDLSCNKLISHIPPQIGNLTRIETLNLSHN--NLTGSIPSTFSNLKHVESLDLSNNKLNGK-IPHQLVELKTLA 214 (249)
Q Consensus 138 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~--~~~~~~~~~~~~~~~L~~l~l~~n~~~~~-~~~~~~~~~~L~ 214 (249)
+..|+.+.+.+..+++. ..+..+++|++|.++.| .+.+.++.....+++|+++++++|++... -...+..+.+|.
T Consensus 42 ~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~ 119 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLK 119 (260)
T ss_pred ccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchh
Confidence 34455566666665442 45667889999999999 44444555556679999999999988741 123346678899
Q ss_pred EEEccccccccCCC---hhhhhhccccccc
Q 042000 215 IFSVAYNNLSGEIP---EWTAQFATFNESS 241 (249)
Q Consensus 215 ~L~l~~n~l~~~~~---~~~~~~~~l~~l~ 241 (249)
+|++.+|..+.... ..+.-+++|+.++
T Consensus 120 ~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD 149 (260)
T KOG2739|consen 120 SLDLFNCSVTNLDDYREKVFLLLPSLKYLD 149 (260)
T ss_pred hhhcccCCccccccHHHHHHHHhhhhcccc
Confidence 99999998775322 2334456666654
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.36 E-value=0.00032 Score=53.16 Aligned_cols=100 Identities=17% Similarity=0.140 Sum_probs=70.6
Q ss_pred hcccceEEcccCeecccCCcccCCCCCccEEeCCCCCCccCCchhccCCcccCEEEeeCCcccCCc-ChhhhcCCCccEE
Q 042000 138 LSLLSGLDLSCNKLISHIPPQIGNLTRIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKI-PHQLVELKTLAIF 216 (249)
Q Consensus 138 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~-~~~~~~~~~L~~L 216 (249)
+.+.++|++.+|.+.+. .....++.|+.|.++-|.|+... .+..+.+|++|++..|.|.+.- ..-+.++|+|+.|
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 66788899999988663 23445789999999999998432 4567899999999999887432 2335678888888
Q ss_pred EccccccccCCC-----hhhhhhccccccc
Q 042000 217 SVAYNNLSGEIP-----EWTAQFATFNESS 241 (249)
Q Consensus 217 ~l~~n~l~~~~~-----~~~~~~~~l~~l~ 241 (249)
-|..|.=.+..+ ..+.-+|+|+.|+
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 888775443322 2345567777654
No 70
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.34 E-value=0.00087 Score=48.37 Aligned_cols=81 Identities=17% Similarity=0.193 Sum_probs=44.7
Q ss_pred cceEEcccCeecccCCcccCCCCCccEEeCCCCCCccCC-chhc-cCCcccCEEEeeCC-cccCCcChhhhcCCCccEEE
Q 042000 141 LSGLDLSCNKLISHIPPQIGNLTRIETLNLSHNNLTGSI-PSTF-SNLKHVESLDLSNN-KLNGKIPHQLVELKTLAIFS 217 (249)
Q Consensus 141 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~~-~~~~~L~~l~l~~n-~~~~~~~~~~~~~~~L~~L~ 217 (249)
++.++-+++.+..+..+.+..++.++.|.+.+|.--+.. ...+ +..++|+.|++++| .|++.....+..+++|+.|+
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 555666666655555555566666666666666432111 1111 13456666666666 56655556666666666666
Q ss_pred cccc
Q 042000 218 VAYN 221 (249)
Q Consensus 218 l~~n 221 (249)
+.+-
T Consensus 183 l~~l 186 (221)
T KOG3864|consen 183 LYDL 186 (221)
T ss_pred hcCc
Confidence 6543
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.97 E-value=0.0026 Score=28.49 Aligned_cols=18 Identities=33% Similarity=0.451 Sum_probs=9.5
Q ss_pred ccEEEccccccccCCChhh
Q 042000 213 LAIFSVAYNNLSGEIPEWT 231 (249)
Q Consensus 213 L~~L~l~~n~l~~~~~~~~ 231 (249)
|++||+++|.++ .+|..+
T Consensus 2 L~~Ldls~n~l~-~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSF 19 (22)
T ss_dssp ESEEEETSSEES-EEGTTT
T ss_pred ccEEECCCCcCE-eCChhh
Confidence 455566655555 444433
No 72
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.18 E-value=0.0022 Score=46.38 Aligned_cols=83 Identities=13% Similarity=0.093 Sum_probs=54.8
Q ss_pred CccEEeCCCCCCccCCchhccCCcccCEEEeeCCcccC-CcChhhh-cCCCccEEEcccc-ccccCCChhhhhhcccccc
Q 042000 164 RIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNG-KIPHQLV-ELKTLAIFSVAYN-NLSGEIPEWTAQFATFNES 240 (249)
Q Consensus 164 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~-~~~~~~~-~~~~L~~L~l~~n-~l~~~~~~~~~~~~~l~~l 240 (249)
.++.++-+++.|....-..+..++.++.+.+.+|+-.+ ...+-+. -.++|+.|++++| .++...-.++..+++|+.+
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 46778888877776666666777777888877774432 2222222 2477888888877 5775556667777777777
Q ss_pred cccCCc
Q 042000 241 SYEGNT 246 (249)
Q Consensus 241 ~l~~n~ 246 (249)
.+.+-|
T Consensus 182 ~l~~l~ 187 (221)
T KOG3864|consen 182 HLYDLP 187 (221)
T ss_pred HhcCch
Confidence 776654
No 73
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.87 E-value=0.018 Score=23.91 Aligned_cols=13 Identities=23% Similarity=0.434 Sum_probs=5.4
Q ss_pred CccEEEccccccc
Q 042000 212 TLAIFSVAYNNLS 224 (249)
Q Consensus 212 ~L~~L~l~~n~l~ 224 (249)
+|+.|++++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 4555555555544
No 74
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=94.20 E-value=0.014 Score=26.69 Aligned_cols=20 Identities=15% Similarity=0.205 Sum_probs=10.3
Q ss_pred CCccEEEccccccccCCChh
Q 042000 211 KTLAIFSVAYNNLSGEIPEW 230 (249)
Q Consensus 211 ~~L~~L~l~~n~l~~~~~~~ 230 (249)
++|++|++++|.+++..+..
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~ 21 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASA 21 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHH
Confidence 45666666666665444433
No 75
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.12 E-value=8.4e-05 Score=61.80 Aligned_cols=39 Identities=31% Similarity=0.520 Sum_probs=19.8
Q ss_pred CCccEEeCCCCCCccC----CchhccCCcccCEEEeeCCcccC
Q 042000 163 TRIETLNLSHNNLTGS----IPSTFSNLKHVESLDLSNNKLNG 201 (249)
Q Consensus 163 ~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~l~l~~n~~~~ 201 (249)
..+++++++.|.+... ++..+..++.++.+.++.|++.+
T Consensus 262 ~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 262 ETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred hhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 3455666666665522 22333344555566666555543
No 76
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=93.66 E-value=0.021 Score=48.03 Aligned_cols=105 Identities=20% Similarity=0.139 Sum_probs=57.2
Q ss_pred hhcccceEEcccC-eeccc----CCcccCCCCCccEEeCCCCC-CccCCchhc-cCCcccCEEEeeCCc-ccCCc-Chhh
Q 042000 137 VLSLLSGLDLSCN-KLISH----IPPQIGNLTRIETLNLSHNN-LTGSIPSTF-SNLKHVESLDLSNNK-LNGKI-PHQL 207 (249)
Q Consensus 137 ~~~~L~~L~l~~~-~~~~~----~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~-~~~~~L~~l~l~~n~-~~~~~-~~~~ 207 (249)
..+.|+.|+++++ ..... .......+.+|+.++++++. +++..-..+ ..+++|+.|.+..|. +++.. ....
T Consensus 212 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~ 291 (482)
T KOG1947|consen 212 KCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIA 291 (482)
T ss_pred hCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHH
Confidence 3566777777762 11111 11223345777778877777 543332232 346778888877776 55433 3344
Q ss_pred hcCCCccEEEccccccc-cC-CChhhhhhccccccc
Q 042000 208 VELKTLAIFSVAYNNLS-GE-IPEWTAQFATFNESS 241 (249)
Q Consensus 208 ~~~~~L~~L~l~~n~l~-~~-~~~~~~~~~~l~~l~ 241 (249)
..+++|++|+++.|... .. +......+++++.+.
T Consensus 292 ~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~ 327 (482)
T KOG1947|consen 292 ERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELK 327 (482)
T ss_pred HhcCcccEEeeecCccchHHHHHHHHHhCcchhhhh
Confidence 55777888888877443 21 222233455555544
No 77
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.63 E-value=0.00023 Score=59.22 Aligned_cols=85 Identities=27% Similarity=0.362 Sum_probs=40.1
Q ss_pred CCCccEEeCCCCCCccC----CchhccCCcc-cCEEEeeCCcccCCc----ChhhhcC-CCccEEEccccccccC----C
Q 042000 162 LTRIETLNLSHNNLTGS----IPSTFSNLKH-VESLDLSNNKLNGKI----PHQLVEL-KTLAIFSVAYNNLSGE----I 227 (249)
Q Consensus 162 ~~~L~~L~l~~~~~~~~----~~~~~~~~~~-L~~l~l~~n~~~~~~----~~~~~~~-~~L~~L~l~~n~l~~~----~ 227 (249)
..+++.|+++.|.++.. +...+...+. +..++++.|.+.+.+ ...+..+ +.+++++++.|.+++. +
T Consensus 203 ~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L 282 (478)
T KOG4308|consen 203 LSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDL 282 (478)
T ss_pred cccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHH
Confidence 34556666666655411 1122333333 444666666555431 1222222 4455666666665533 2
Q ss_pred ChhhhhhcccccccccCCc
Q 042000 228 PEWTAQFATFNESSYEGNT 246 (249)
Q Consensus 228 ~~~~~~~~~l~~l~l~~n~ 246 (249)
+..+..++.++.+.+.+|+
T Consensus 283 ~~~l~~~~~l~~l~l~~n~ 301 (478)
T KOG4308|consen 283 AEVLVSCRQLEELSLSNNP 301 (478)
T ss_pred HHHHhhhHHHHHhhcccCc
Confidence 2333344555555555555
No 78
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.77 E-value=0.0028 Score=46.96 Aligned_cols=84 Identities=19% Similarity=0.240 Sum_probs=58.4
Q ss_pred hcccceEEcccCeecccCCcccCCCCCccEEeCCCCCCccCCchhccCCcccCEEEeeCCcccCCcChhhhcCCCccEEE
Q 042000 138 LSLLSGLDLSCNKLISHIPPQIGNLTRIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLAIFS 217 (249)
Q Consensus 138 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~ 217 (249)
....+.||++.+++.. ....++.++.++.++++.|++. ..|..+.....++.+++..|... ..|..+...+.++.++
T Consensus 41 ~kr~tvld~~s~r~vn-~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLVN-LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE 117 (326)
T ss_pred cceeeeehhhhhHHHh-hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence 4556677777777544 4455666677777888877777 56766666666777777666665 6677777777777777
Q ss_pred ccccccc
Q 042000 218 VAYNNLS 224 (249)
Q Consensus 218 l~~n~l~ 224 (249)
.-.+.+.
T Consensus 118 ~k~~~~~ 124 (326)
T KOG0473|consen 118 QKKTEFF 124 (326)
T ss_pred hccCcch
Confidence 7777655
No 79
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=91.13 E-value=0.21 Score=23.06 Aligned_cols=15 Identities=40% Similarity=0.545 Sum_probs=8.4
Q ss_pred CcccEEEccCccCCC
Q 042000 21 TNLRWLQLDGNHFVG 35 (249)
Q Consensus 21 ~~L~~L~l~~~~~~~ 35 (249)
++|++|++.+|++..
T Consensus 2 ~~L~~L~L~~N~l~~ 16 (26)
T smart00370 2 PNLRELDLSNNQLSS 16 (26)
T ss_pred CCCCEEECCCCcCCc
Confidence 445566666665553
No 80
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=91.13 E-value=0.21 Score=23.06 Aligned_cols=15 Identities=40% Similarity=0.545 Sum_probs=8.4
Q ss_pred CcccEEEccCccCCC
Q 042000 21 TNLRWLQLDGNHFVG 35 (249)
Q Consensus 21 ~~L~~L~l~~~~~~~ 35 (249)
++|++|++.+|++..
T Consensus 2 ~~L~~L~L~~N~l~~ 16 (26)
T smart00369 2 PNLRELDLSNNQLSS 16 (26)
T ss_pred CCCCEEECCCCcCCc
Confidence 445566666665553
No 81
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=90.07 E-value=0.0058 Score=45.40 Aligned_cols=88 Identities=14% Similarity=0.113 Sum_probs=60.6
Q ss_pred CCCCCCCCcccEEEccCccCCCCCCccccCCCCCCeEEccCccccccccccccccCCCCeEeCCCCcCcCccceEEeccc
Q 042000 14 FPRNFNLTNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPENHLEGLIPILDISDN 93 (249)
Q Consensus 14 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~l~~~ 93 (249)
...+......+.||++.+.+. .....|..+..+..++++.|.+. ..|++++.+..+.+++...|..+
T Consensus 35 v~ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~----------- 101 (326)
T KOG0473|consen 35 VREIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS----------- 101 (326)
T ss_pred hhhhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-----------
Confidence 444556777888888888765 33344556667777788877776 67778877777777777777666
Q ss_pred cccccCCCCCcCCCCCccEEEccCcc
Q 042000 94 NISGRLPSCTFSNCSSLVTLDLSYNR 119 (249)
Q Consensus 94 ~~~~~~~~~~~~~l~~L~~L~l~~~~ 119 (249)
..|. .+...+.+++++...+.
T Consensus 102 ----~~p~-s~~k~~~~k~~e~k~~~ 122 (326)
T KOG0473|consen 102 ----QQPK-SQKKEPHPKKNEQKKTE 122 (326)
T ss_pred ----hCCc-cccccCCcchhhhccCc
Confidence 4554 66667777777666554
No 82
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=83.50 E-value=0.59 Score=22.14 Aligned_cols=15 Identities=20% Similarity=0.328 Sum_probs=8.9
Q ss_pred CCccEEEcccccccc
Q 042000 211 KTLAIFSVAYNNLSG 225 (249)
Q Consensus 211 ~~L~~L~l~~n~l~~ 225 (249)
++|++|||++|.++.
T Consensus 2 ~~L~~LdL~~N~i~~ 16 (28)
T smart00368 2 PSLRELDLSNNKLGD 16 (28)
T ss_pred CccCEEECCCCCCCH
Confidence 356666666666653
No 83
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=80.90 E-value=1.1 Score=20.84 Aligned_cols=18 Identities=33% Similarity=0.593 Sum_probs=12.7
Q ss_pred CCccEEEccccccccCCCh
Q 042000 211 KTLAIFSVAYNNLSGEIPE 229 (249)
Q Consensus 211 ~~L~~L~l~~n~l~~~~~~ 229 (249)
++|+.|++++|+++ .+|+
T Consensus 2 ~~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLT-SLPE 19 (26)
T ss_pred cccceeecCCCccc-cCcc
Confidence 45777888888777 5665
No 84
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=80.74 E-value=1.1 Score=37.95 Aligned_cols=37 Identities=27% Similarity=0.301 Sum_probs=18.3
Q ss_pred CCcccCEEEeeCCcccC--CcChhhhcCCCccEEEcccc
Q 042000 185 NLKHVESLDLSNNKLNG--KIPHQLVELKTLAIFSVAYN 221 (249)
Q Consensus 185 ~~~~L~~l~l~~n~~~~--~~~~~~~~~~~L~~L~l~~n 221 (249)
..+.+..+++++|++-. .+.......|+++.|+|++|
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 44555555555555532 22223344455666666655
No 85
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=78.20 E-value=0.97 Score=20.84 Aligned_cols=14 Identities=7% Similarity=0.121 Sum_probs=8.7
Q ss_pred CCccEEEccccc-cc
Q 042000 211 KTLAIFSVAYNN-LS 224 (249)
Q Consensus 211 ~~L~~L~l~~n~-l~ 224 (249)
++|++|++++|. ++
T Consensus 2 ~~L~~L~l~~C~~it 16 (26)
T smart00367 2 PNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCEeCCCCCCCcC
Confidence 566677777663 44
No 86
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=75.19 E-value=2.9 Score=19.43 Aligned_cols=14 Identities=43% Similarity=0.442 Sum_probs=8.1
Q ss_pred CcccEEEccCccCC
Q 042000 21 TNLRWLQLDGNHFV 34 (249)
Q Consensus 21 ~~L~~L~l~~~~~~ 34 (249)
.+|++|++++|++.
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 45566666666554
No 87
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=66.06 E-value=19 Score=30.35 Aligned_cols=60 Identities=20% Similarity=0.231 Sum_probs=29.0
Q ss_pred CccEEeCCCCCCccC---CchhccCCcccCEEEeeCCcccC----CcChhhhcCCCccEEEcccccc
Q 042000 164 RIETLNLSHNNLTGS---IPSTFSNLKHVESLDLSNNKLNG----KIPHQLVELKTLAIFSVAYNNL 223 (249)
Q Consensus 164 ~L~~L~l~~~~~~~~---~~~~~~~~~~L~~l~l~~n~~~~----~~~~~~~~~~~L~~L~l~~n~l 223 (249)
-++.+.++.+..... .......-+.+..+++++|.+.+ .+|.......++..+..+.|..
T Consensus 414 ~l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~p 480 (553)
T KOG4242|consen 414 VLAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNLP 480 (553)
T ss_pred cccCcccCCCcccccHHHHHHhhccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCCc
Confidence 345555555555411 11222344556666666665543 2344444445555555554443
No 88
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=63.69 E-value=4 Score=34.76 Aligned_cols=63 Identities=29% Similarity=0.266 Sum_probs=26.2
Q ss_pred cccceEEcccCeeccc--CCcccCCCCCccEEeCCCCCCccCCchhcc--CCcccCEEEeeCCcccC
Q 042000 139 SLLSGLDLSCNKLISH--IPPQIGNLTRIETLNLSHNNLTGSIPSTFS--NLKHVESLDLSNNKLNG 201 (249)
Q Consensus 139 ~~L~~L~l~~~~~~~~--~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~l~l~~n~~~~ 201 (249)
+.+..+.+++|++... +...-...|+|..|+|++|...-.....+. ....|++|.+.||++.+
T Consensus 218 p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 218 PEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred cceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCcccc
Confidence 3445555555554221 111112245666666666521101111111 22345566666665543
No 89
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=23.87 E-value=52 Score=34.43 Aligned_cols=32 Identities=34% Similarity=0.308 Sum_probs=26.2
Q ss_pred EeeccccCCCCCCCCCCCCcccEEEccCccCC
Q 042000 3 VLSNNSLNGHMFPRNFNLTNLRWLQLDGNHFV 34 (249)
Q Consensus 3 ~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~ 34 (249)
||++|.|+...+..|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 68899998766777778899999999998664
No 90
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=23.39 E-value=68 Score=33.69 Aligned_cols=32 Identities=28% Similarity=0.345 Sum_probs=20.4
Q ss_pred EcccCeecccCCcccCCCCCccEEeCCCCCCc
Q 042000 145 DLSCNKLISHIPPQIGNLTRIETLNLSHNNLT 176 (249)
Q Consensus 145 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 176 (249)
||++|++.......|..+++|+.|+|.+|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 35566666555556666667777777766654
Done!