Query 042000
Match_columns 249
No_of_seqs 157 out of 2300
Neff 11.1
Searched_HMMs 29240
Date Mon Mar 25 22:27:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042000.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042000hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ogq_A PGIP-2, polygalacturona 100.0 5.7E-34 2E-38 223.6 16.7 238 1-249 54-305 (313)
2 3rgz_A Protein brassinosteroid 100.0 6.7E-32 2.3E-36 235.1 19.6 246 2-249 423-741 (768)
3 3rgz_A Protein brassinosteroid 100.0 3.9E-31 1.3E-35 230.4 20.4 238 2-247 399-716 (768)
4 3v47_A TOLL-like receptor 5B a 100.0 6.4E-31 2.2E-35 216.5 20.6 249 1-249 34-409 (455)
5 3zyi_A Leucine-rich repeat-con 100.0 1.1E-30 3.7E-35 214.9 18.0 225 2-249 80-304 (452)
6 3zyj_A Leucine-rich repeat-con 100.0 1.6E-30 5.4E-35 213.3 17.8 225 2-249 69-293 (440)
7 2id5_A Lingo-1, leucine rich r 100.0 3E-30 1E-34 213.7 17.5 247 1-249 60-334 (477)
8 1ozn_A Reticulon 4 receptor; N 100.0 1.1E-29 3.7E-34 196.9 19.5 223 2-249 16-239 (285)
9 2z66_A Variable lymphocyte rec 100.0 8.3E-30 2.8E-34 199.5 17.0 237 2-249 12-262 (306)
10 4fcg_A Uncharacterized protein 100.0 2.5E-29 8.7E-34 198.3 17.7 228 1-246 85-312 (328)
11 3t6q_A CD180 antigen; protein- 100.0 4.6E-29 1.6E-33 212.3 20.1 246 1-249 282-561 (606)
12 1xku_A Decorin; proteoglycan, 100.0 4.8E-28 1.7E-32 191.4 20.5 232 2-247 57-305 (330)
13 2z80_A TOLL-like receptor 2, v 100.0 2.5E-29 8.7E-34 200.5 12.7 234 3-249 37-315 (353)
14 1ogq_A PGIP-2, polygalacturona 100.0 2.2E-28 7.5E-33 191.9 15.8 217 21-247 50-280 (313)
15 3o6n_A APL1; leucine-rich repe 100.0 5.1E-28 1.8E-32 195.5 17.8 107 138-249 247-353 (390)
16 2id5_A Lingo-1, leucine rich r 100.0 2E-28 6.9E-33 202.8 15.3 239 1-247 36-308 (477)
17 1ozn_A Reticulon 4 receptor; N 100.0 1E-27 3.6E-32 185.7 17.4 204 1-226 36-240 (285)
18 2ft3_A Biglycan; proteoglycan, 100.0 1.2E-27 4E-32 189.4 17.6 241 2-248 38-307 (332)
19 3oja_B Anopheles plasmodium-re 100.0 1E-27 3.6E-32 203.5 17.8 239 2-249 80-359 (597)
20 3vq2_A TLR4, TOLL-like recepto 100.0 1.5E-27 5E-32 203.1 18.4 221 19-249 326-559 (606)
21 3t6q_A CD180 antigen; protein- 100.0 5.1E-27 1.8E-31 199.7 21.7 236 2-246 259-511 (606)
22 1xku_A Decorin; proteoglycan, 100.0 4.9E-27 1.7E-31 185.6 19.9 231 2-247 36-275 (330)
23 4g8a_A TOLL-like receptor 4; l 100.0 4.4E-27 1.5E-31 200.8 20.3 112 138-249 468-581 (635)
24 2ft3_A Biglycan; proteoglycan, 100.0 5.3E-27 1.8E-31 185.6 19.0 211 22-247 34-276 (332)
25 2o6q_A Variable lymphocyte rec 100.0 1E-26 3.5E-31 178.8 20.0 182 46-249 38-219 (270)
26 2z62_A TOLL-like receptor 4, v 99.9 6.7E-27 2.3E-31 180.4 16.6 218 6-249 16-238 (276)
27 1ziw_A TOLL-like receptor 3; i 99.9 1.2E-26 4.1E-31 199.9 20.0 221 21-249 381-623 (680)
28 3j0a_A TOLL-like receptor 5; m 99.9 9.1E-27 3.1E-31 204.8 19.0 247 1-247 28-374 (844)
29 4fcg_A Uncharacterized protein 99.9 4.7E-27 1.6E-31 185.4 15.1 209 20-248 80-290 (328)
30 3o6n_A APL1; leucine-rich repe 99.9 7E-27 2.4E-31 188.8 15.9 240 2-247 50-330 (390)
31 4eco_A Uncharacterized protein 99.9 1.4E-26 4.8E-31 197.7 17.5 238 2-249 310-601 (636)
32 3v47_A TOLL-like receptor 5B a 99.9 3.2E-26 1.1E-30 188.5 18.1 119 103-228 294-412 (455)
33 2z66_A Variable lymphocyte rec 99.9 2.1E-26 7.3E-31 180.1 15.8 213 24-247 10-235 (306)
34 4eco_A Uncharacterized protein 99.9 1.1E-26 3.8E-31 198.3 15.3 235 1-247 210-500 (636)
35 1p9a_G Platelet glycoprotein I 99.9 1E-25 3.4E-30 174.8 18.8 204 17-249 6-209 (290)
36 3oja_B Anopheles plasmodium-re 99.9 2.3E-26 7.8E-31 195.3 15.6 240 2-247 56-336 (597)
37 1ziw_A TOLL-like receptor 3; i 99.9 3.5E-26 1.2E-30 197.1 16.9 121 1-122 29-159 (680)
38 3j0a_A TOLL-like receptor 5; m 99.9 1.8E-26 6E-31 203.0 15.0 236 2-249 295-561 (844)
39 3zyi_A Leucine-rich repeat-con 99.9 1.2E-25 4.3E-30 184.8 19.1 218 3-247 60-278 (452)
40 3zyj_A Leucine-rich repeat-con 99.9 1.4E-25 4.7E-30 183.9 18.9 218 3-247 49-267 (440)
41 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 2.3E-25 7.8E-30 188.0 20.5 61 187-249 450-511 (562)
42 3o53_A Protein LRIM1, AGAP0063 99.9 3.1E-27 1.1E-31 185.7 8.5 214 19-249 32-251 (317)
43 2z63_A TOLL-like receptor 4, v 99.9 8.8E-26 3E-30 190.8 17.5 232 3-249 288-532 (570)
44 2z7x_B TOLL-like receptor 1, v 99.9 3.7E-26 1.3E-30 191.1 14.6 243 1-247 4-411 (520)
45 3vq2_A TLR4, TOLL-like recepto 99.9 1.4E-25 4.8E-30 190.9 17.6 231 2-247 290-533 (606)
46 2z81_A CD282 antigen, TOLL-lik 99.9 2.9E-26 9.8E-31 193.0 13.2 125 1-125 30-165 (549)
47 2z7x_B TOLL-like receptor 1, v 99.9 6.6E-26 2.3E-30 189.6 15.2 111 136-247 321-456 (520)
48 3oja_A Leucine-rich immune mol 99.9 1.6E-26 5.3E-31 191.5 11.2 214 19-249 32-251 (487)
49 4ecn_A Leucine-rich repeat pro 99.9 1.5E-25 5.3E-30 195.5 17.6 237 2-247 553-839 (876)
50 4fmz_A Internalin; leucine ric 99.9 6.8E-25 2.3E-29 174.5 19.4 226 1-247 92-345 (347)
51 3oja_A Leucine-rich immune mol 99.9 2.6E-26 9E-31 190.1 11.5 231 1-249 38-283 (487)
52 1wwl_A Monocyte differentiatio 99.9 5.7E-27 2E-31 183.8 7.0 223 2-248 68-309 (312)
53 3o53_A Protein LRIM1, AGAP0063 99.9 1.6E-26 5.4E-31 181.7 9.3 227 1-245 38-272 (317)
54 4ecn_A Leucine-rich repeat pro 99.9 7.4E-25 2.5E-29 191.2 19.7 239 1-247 519-818 (876)
55 2z80_A TOLL-like receptor 2, v 99.9 8.4E-26 2.9E-30 180.2 12.6 222 16-247 26-289 (353)
56 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 5.8E-25 2E-29 185.5 17.5 87 160-246 350-439 (562)
57 4fmz_A Internalin; leucine ric 99.9 2E-24 6.8E-29 171.8 19.6 233 1-248 70-324 (347)
58 2z62_A TOLL-like receptor 4, v 99.9 6.3E-25 2.1E-29 169.3 16.0 205 1-228 32-241 (276)
59 3rfs_A Internalin B, repeat mo 99.9 1.3E-24 4.3E-29 167.2 14.8 186 17-233 59-244 (272)
60 2z63_A TOLL-like receptor 4, v 99.9 1.6E-24 5.3E-29 183.1 15.1 232 1-246 32-336 (570)
61 1o6v_A Internalin A; bacterial 99.9 1.1E-23 3.7E-28 173.9 17.6 101 139-247 243-343 (466)
62 1wwl_A Monocyte differentiatio 99.9 3.1E-24 1.1E-28 168.2 13.1 204 1-225 99-310 (312)
63 3rfs_A Internalin B, repeat mo 99.9 1.2E-23 4.1E-28 161.8 15.4 186 17-228 37-222 (272)
64 2xwt_C Thyrotropin receptor; s 99.9 7.2E-24 2.5E-28 160.0 13.9 207 9-247 23-238 (239)
65 1o6v_A Internalin A; bacterial 99.9 3.8E-23 1.3E-27 170.6 19.2 103 137-247 263-365 (466)
66 2o6q_A Variable lymphocyte rec 99.9 8.3E-23 2.9E-27 156.9 19.1 200 2-226 21-220 (270)
67 3m19_A Variable lymphocyte rec 99.9 5.4E-23 1.9E-27 156.3 17.8 181 21-226 14-194 (251)
68 1p9a_G Platelet glycoprotein I 99.9 7.1E-23 2.4E-27 158.7 18.6 195 1-224 14-208 (290)
69 3bz5_A Internalin-J, INLJ; leu 99.9 2.5E-22 8.7E-27 165.0 21.2 196 1-226 46-248 (457)
70 3m19_A Variable lymphocyte rec 99.9 2.9E-22 9.9E-27 152.3 18.5 176 2-202 19-194 (251)
71 2z81_A CD282 antigen, TOLL-lik 99.9 2E-23 6.8E-28 175.7 12.9 233 3-246 11-262 (549)
72 2xwt_C Thyrotropin receptor; s 99.9 1.3E-22 4.6E-27 153.0 14.8 194 1-222 35-237 (239)
73 3bz5_A Internalin-J, INLJ; leu 99.9 4.7E-22 1.6E-26 163.4 19.2 216 1-246 68-297 (457)
74 4glp_A Monocyte differentiatio 99.9 6.3E-23 2.2E-27 160.7 13.0 206 20-248 90-307 (310)
75 1h6u_A Internalin H; cell adhe 99.9 2.1E-22 7.3E-27 157.4 15.8 190 19-246 39-228 (308)
76 3goz_A Leucine-rich repeat-con 99.9 2.9E-24 9.8E-29 171.8 4.3 243 2-247 3-296 (362)
77 4glp_A Monocyte differentiatio 99.9 2.1E-23 7.3E-28 163.4 8.9 204 1-225 95-308 (310)
78 2ca6_A RAN GTPase-activating p 99.9 1.2E-24 4E-29 175.6 -0.3 136 108-247 159-315 (386)
79 1h6u_A Internalin H; cell adhe 99.9 1E-21 3.5E-26 153.6 15.9 187 1-225 45-231 (308)
80 3g06_A SSPH2 (leucine-rich rep 99.9 8.1E-21 2.8E-25 160.8 22.4 219 2-248 45-297 (622)
81 1jl5_A Outer protein YOPM; leu 99.9 3.8E-21 1.3E-25 157.9 19.6 227 1-247 135-408 (454)
82 1jl5_A Outer protein YOPM; leu 99.9 2.8E-22 9.4E-27 164.6 10.7 196 2-224 16-250 (454)
83 2ast_B S-phase kinase-associat 99.9 5.4E-23 1.8E-27 162.8 5.4 220 2-246 75-304 (336)
84 2o6s_A Variable lymphocyte rec 99.9 6.1E-21 2.1E-25 140.9 14.0 161 46-235 29-189 (208)
85 2ast_B S-phase kinase-associat 99.9 6.3E-23 2.1E-27 162.4 3.4 219 2-245 52-282 (336)
86 1z7x_W Ribonuclease inhibitor; 99.9 5.7E-24 1.9E-28 175.3 -3.6 245 2-247 90-410 (461)
87 1z7x_W Ribonuclease inhibitor; 99.9 2.8E-23 9.5E-28 171.2 -0.5 226 19-247 168-439 (461)
88 3cvr_A Invasion plasmid antige 99.8 3.9E-20 1.3E-24 154.9 17.0 185 2-236 64-255 (571)
89 2xot_A Amphoterin-induced prot 99.8 3.1E-20 1.1E-24 148.3 15.7 177 24-249 21-203 (361)
90 3goz_A Leucine-rich repeat-con 99.8 5.4E-22 1.9E-26 158.6 4.1 228 1-231 26-304 (362)
91 3g06_A SSPH2 (leucine-rich rep 99.8 3E-19 1E-23 151.3 20.7 193 21-246 40-272 (622)
92 4ay9_X Follicle-stimulating ho 99.8 3.9E-20 1.3E-24 147.2 14.0 228 3-244 15-255 (350)
93 2v9t_B SLIT homolog 2 protein 99.8 8.3E-20 2.8E-24 135.9 14.5 153 24-225 14-166 (220)
94 4ay9_X Follicle-stimulating ho 99.8 1E-19 3.4E-24 144.8 14.0 216 14-242 3-233 (350)
95 2v70_A SLIT-2, SLIT homolog 2 99.8 2E-19 6.7E-24 133.9 14.6 153 48-225 14-167 (220)
96 2ca6_A RAN GTPase-activating p 99.8 4.5E-22 1.5E-26 160.5 -0.3 239 1-242 36-337 (386)
97 1h6t_A Internalin B; cell adhe 99.8 2.6E-19 8.8E-24 138.8 14.7 172 18-225 43-214 (291)
98 1m9s_A Internalin B; cell inva 99.8 1.5E-19 5.2E-24 152.8 13.8 174 17-226 39-212 (605)
99 2xot_A Amphoterin-induced prot 99.8 2.8E-19 9.6E-24 142.8 14.2 174 2-200 23-202 (361)
100 2v9t_B SLIT homolog 2 protein 99.8 6.4E-19 2.2E-23 131.1 15.0 150 2-200 16-165 (220)
101 3cvr_A Invasion plasmid antige 99.8 1.4E-18 4.9E-23 145.5 17.7 178 21-248 59-243 (571)
102 3e6j_A Variable lymphocyte rec 99.8 1.1E-18 3.8E-23 130.6 15.3 156 45-226 19-174 (229)
103 2o6s_A Variable lymphocyte rec 99.8 2.9E-19 1E-23 131.8 12.0 187 2-224 12-198 (208)
104 1h6t_A Internalin B; cell adhe 99.8 4.4E-19 1.5E-23 137.5 13.1 187 23-247 26-212 (291)
105 4g8a_A TOLL-like receptor 4; l 99.8 4E-18 1.4E-22 145.5 18.3 198 18-224 368-580 (635)
106 2v70_A SLIT-2, SLIT homolog 2 99.8 2.8E-18 9.7E-23 127.6 14.4 153 24-201 14-167 (220)
107 3e6j_A Variable lymphocyte rec 99.8 6.1E-18 2.1E-22 126.6 15.5 152 24-201 22-173 (229)
108 1m9s_A Internalin B; cell inva 99.8 6E-19 2E-23 149.2 9.4 189 21-247 21-209 (605)
109 4ezg_A Putative uncharacterize 99.8 3.1E-18 1E-22 125.3 11.6 106 138-247 87-193 (197)
110 1xeu_A Internalin C; cellular 99.8 4.8E-18 1.6E-22 129.7 11.5 161 4-201 26-186 (263)
111 4ezg_A Putative uncharacterize 99.8 5.5E-18 1.9E-22 123.9 11.0 154 42-225 41-195 (197)
112 1xeu_A Internalin C; cellular 99.7 4.2E-18 1.4E-22 130.1 9.1 171 19-226 17-187 (263)
113 1w8a_A SLIT protein; signaling 99.7 1.5E-17 5.1E-22 121.1 10.1 133 72-228 11-143 (192)
114 2wfh_A SLIT homolog 2 protein 99.7 5.3E-17 1.8E-21 118.2 11.6 108 109-224 32-139 (193)
115 3sb4_A Hypothetical leucine ri 99.7 4.3E-17 1.5E-21 128.5 11.5 103 138-242 225-328 (329)
116 1dce_A Protein (RAB geranylger 99.7 6.2E-20 2.1E-24 154.2 -5.4 204 18-242 346-567 (567)
117 2o6r_A Variable lymphocyte rec 99.7 3.2E-16 1.1E-20 112.5 12.2 114 108-228 28-141 (177)
118 1dce_A Protein (RAB geranylger 99.7 6.4E-19 2.2E-23 148.1 -4.5 197 42-247 346-545 (567)
119 2ell_A Acidic leucine-rich nuc 99.7 6.6E-16 2.3E-20 109.9 11.3 130 108-246 24-158 (168)
120 2je0_A Acidic leucine-rich nuc 99.7 6E-16 2.1E-20 107.9 10.1 128 108-244 17-149 (149)
121 1w8a_A SLIT protein; signaling 99.6 1.9E-15 6.6E-20 109.9 12.1 131 47-202 10-141 (192)
122 3ogk_B Coronatine-insensitive 99.6 2.1E-17 7.3E-22 140.1 1.3 88 160-247 433-525 (592)
123 4b8c_D Glucose-repressible alc 99.6 1.1E-16 3.7E-21 138.4 5.3 142 37-204 216-358 (727)
124 2ell_A Acidic leucine-rich nuc 99.6 2.1E-15 7.1E-20 107.3 11.0 132 45-224 24-160 (168)
125 3sb4_A Hypothetical leucine ri 99.6 8.6E-16 2.9E-20 121.1 8.2 208 1-218 53-328 (329)
126 3ogk_B Coronatine-insensitive 99.6 3.3E-17 1.1E-21 138.9 -0.4 85 162-246 377-474 (592)
127 2wfh_A SLIT homolog 2 protein 99.6 1.7E-14 5.7E-19 104.9 13.2 79 24-121 13-91 (193)
128 3g39_A Variable lymphocyte rec 99.6 6.7E-15 2.3E-19 104.9 10.1 108 109-226 10-117 (170)
129 1a9n_A U2A', U2A'; complex (nu 99.6 8.4E-15 2.9E-19 105.0 10.5 103 140-246 43-151 (176)
130 4b8c_D Glucose-repressible alc 99.6 4.4E-16 1.5E-20 134.7 3.6 181 21-229 173-359 (727)
131 2je0_A Acidic leucine-rich nuc 99.6 6.6E-15 2.3E-19 102.6 8.9 61 159-219 84-148 (149)
132 2o6r_A Variable lymphocyte rec 99.6 4.3E-14 1.5E-18 101.3 13.4 81 23-121 9-89 (177)
133 2r9u_A Variable lymphocyte rec 99.6 1.9E-14 6.4E-19 102.9 10.1 106 110-225 14-119 (174)
134 2p1m_B Transport inhibitor res 99.6 3.6E-16 1.2E-20 132.6 0.5 86 161-247 430-518 (594)
135 2p1m_B Transport inhibitor res 99.5 3E-16 1E-20 133.1 -2.1 62 19-80 103-167 (594)
136 4fdw_A Leucine rich hypothetic 99.5 1.8E-13 6.2E-18 110.4 13.7 213 14-245 129-355 (401)
137 1a9n_A U2A', U2A'; complex (nu 99.5 4.7E-14 1.6E-18 101.1 8.8 133 40-224 14-153 (176)
138 3g39_A Variable lymphocyte rec 99.5 1.5E-13 5E-18 97.9 10.8 104 1-122 13-116 (170)
139 2r9u_A Variable lymphocyte rec 99.5 2.4E-13 8.1E-18 97.1 10.9 102 2-121 17-118 (174)
140 4fdw_A Leucine rich hypothetic 99.5 7.7E-13 2.6E-17 106.7 14.7 213 14-244 151-379 (401)
141 1ds9_A Outer arm dynein; leuci 99.5 9E-16 3.1E-20 112.2 -4.2 82 139-224 93-185 (198)
142 1ds9_A Outer arm dynein; leuci 99.5 4.9E-16 1.7E-20 113.6 -5.7 130 103-246 43-183 (198)
143 3un9_A NLR family member X1; l 99.4 9.2E-15 3.2E-19 116.8 -3.7 172 44-233 71-261 (372)
144 2ifg_A High affinity nerve gro 99.4 1.7E-12 5.7E-17 103.0 8.8 86 138-224 30-116 (347)
145 3un9_A NLR family member X1; l 99.3 7.2E-14 2.4E-18 111.7 -0.7 163 68-247 71-251 (372)
146 2ifg_A High affinity nerve gro 99.3 1.1E-11 3.9E-16 98.2 10.9 103 2-122 13-117 (347)
147 2ra8_A Uncharacterized protein 99.0 6.8E-11 2.3E-15 93.8 1.4 70 162-231 251-327 (362)
148 4fs7_A Uncharacterized protein 99.0 1.1E-08 3.8E-13 82.4 13.8 215 14-239 155-392 (394)
149 2ra8_A Uncharacterized protein 99.0 8.5E-10 2.9E-14 87.6 7.0 84 137-222 250-341 (362)
150 4gt6_A Cell surface protein; l 98.9 1.2E-07 4.1E-12 76.3 15.6 103 139-245 265-367 (394)
151 4fs7_A Uncharacterized protein 98.8 1.1E-07 3.6E-12 76.7 12.5 188 12-216 176-393 (394)
152 4gt6_A Cell surface protein; l 98.7 5E-07 1.7E-11 72.7 15.0 103 137-245 286-388 (394)
153 1io0_A Tropomodulin; LRR prote 98.7 3.4E-09 1.2E-13 76.2 1.3 119 103-224 31-164 (185)
154 3e4g_A ATP synthase subunit S, 98.7 8.4E-09 2.9E-13 72.7 2.7 87 139-225 61-154 (176)
155 3e4g_A ATP synthase subunit S, 98.6 1.3E-08 4.3E-13 71.8 3.1 85 163-247 61-151 (176)
156 4h09_A Hypothetical leucine ri 98.6 2.5E-06 8.4E-11 68.3 16.7 104 138-244 239-342 (379)
157 1io0_A Tropomodulin; LRR prote 98.6 5.1E-09 1.7E-13 75.3 0.5 109 138-246 35-162 (185)
158 3rw6_A Nuclear RNA export fact 98.4 4.7E-07 1.6E-11 68.5 6.0 79 161-241 168-257 (267)
159 3rw6_A Nuclear RNA export fact 98.2 1.5E-06 5.1E-11 65.7 4.7 80 137-217 168-257 (267)
160 4h09_A Hypothetical leucine ri 98.1 4.9E-05 1.7E-09 60.7 11.8 199 9-235 146-356 (379)
161 3rfe_A Platelet glycoprotein I 97.9 1.7E-05 6E-10 53.1 4.9 56 167-224 12-68 (130)
162 1pgv_A TMD-1, tropomodulin TMD 97.8 6.9E-06 2.4E-10 58.9 2.0 119 103-224 36-170 (197)
163 1pgv_A TMD-1, tropomodulin TMD 97.6 3.6E-05 1.2E-09 55.2 3.0 109 138-246 40-168 (197)
164 3rfe_A Platelet glycoprotein I 97.1 0.0011 3.7E-08 44.3 5.9 56 25-82 12-68 (130)
165 2lz0_A Uncharacterized protein 88.1 1.1 3.8E-05 28.0 5.0 45 9-54 8-52 (100)
166 2lz0_A Uncharacterized protein 85.4 1.4 4.9E-05 27.4 4.4 49 30-79 5-53 (100)
No 1
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=5.7e-34 Score=223.64 Aligned_cols=238 Identities=32% Similarity=0.510 Sum_probs=211.8
Q ss_pred CeEeeccccCC--CCCCCCCCCCcccEEEccC-ccCCCCCCccccCCCCCCeEEccCccccccccccccccCCCCeEeCC
Q 042000 1 SLVLSNNSLNG--HMFPRNFNLTNLRWLQLDG-NHFVGENPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMP 77 (249)
Q Consensus 1 ~l~l~~~~l~~--~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 77 (249)
+|+|++|.+++ .+|+.+.++++|++|++++ |.+.+..|..|+++++|++|++++|.+.+..|..+..+++|++|+++
T Consensus 54 ~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls 133 (313)
T 1ogq_A 54 NLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFS 133 (313)
T ss_dssp EEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECC
T ss_pred EEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCC
Confidence 37899999998 8999999999999999995 88888889999999999999999999988899999999999999999
Q ss_pred CCcCcCc----------cceEEeccccccccCCCCCcCCCC-CccEEEccCccccccCCCcchhhhcccchhcccceEEc
Q 042000 78 ENHLEGL----------IPILDISDNNISGRLPSCTFSNCS-SLVTLDLSYNRINGSIPEWNIAYIYQGKVLSLLSGLDL 146 (249)
Q Consensus 78 ~~~~~~~----------~~~l~l~~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l 146 (249)
+|.+.+. +..+++++|.+.+.++. .+..++ .|++|++++|.+.+..|... ..+. |++|++
T Consensus 134 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~-~l~~l~~~L~~L~L~~N~l~~~~~~~~-------~~l~-L~~L~L 204 (313)
T 1ogq_A 134 YNALSGTLPPSISSLPNLVGITFDGNRISGAIPD-SYGSFSKLFTSMTISRNRLTGKIPPTF-------ANLN-LAFVDL 204 (313)
T ss_dssp SSEEESCCCGGGGGCTTCCEEECCSSCCEEECCG-GGGCCCTTCCEEECCSSEEEEECCGGG-------GGCC-CSEEEC
T ss_pred CCccCCcCChHHhcCCCCCeEECcCCcccCcCCH-HHhhhhhcCcEEECcCCeeeccCChHH-------hCCc-ccEEEC
Confidence 9987743 55689999999877777 777787 89999999999987666532 1233 999999
Q ss_pred ccCeecccCCcccCCCCCccEEeCCCCCCccCCchhccCCcccCEEEeeCCcccCCcChhhhcCCCccEEEccccccccC
Q 042000 147 SCNKLISHIPPQIGNLTRIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLAIFSVAYNNLSGE 226 (249)
Q Consensus 147 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 226 (249)
++|.++...+..+..+++|+.|++++|.+.+..+. +..+++|++|++++|.+.+..|..+..+++|+.|++++|.+++.
T Consensus 205 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 283 (313)
T 1ogq_A 205 SRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE 283 (313)
T ss_dssp CSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEE
T ss_pred cCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCccccc
Confidence 99999888888899999999999999999865554 78889999999999999989999999999999999999999988
Q ss_pred CChhhhhhcccccccccCCcccC
Q 042000 227 IPEWTAQFATFNESSYEGNTFLC 249 (249)
Q Consensus 227 ~~~~~~~~~~l~~l~l~~n~~~c 249 (249)
+|.. ..+++|+.+++.+|+++|
T Consensus 284 ip~~-~~l~~L~~l~l~~N~~lc 305 (313)
T 1ogq_A 284 IPQG-GNLQRFDVSAYANNKCLC 305 (313)
T ss_dssp CCCS-TTGGGSCGGGTCSSSEEE
T ss_pred CCCC-ccccccChHHhcCCCCcc
Confidence 8886 889999999999999887
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=6.7e-32 Score=235.14 Aligned_cols=246 Identities=40% Similarity=0.572 Sum_probs=182.0
Q ss_pred eEeeccccCCCCCCCCCCCCcccEEEccCccCCCCCCccccCCCCCCeEEccCccccccccccccccCCCCeEeCCCCcC
Q 042000 2 LVLSNNSLNGHMFPRNFNLTNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPENHL 81 (249)
Q Consensus 2 l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 81 (249)
|++++|.+++.+|..+.++++|++|++++|.+.+..|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+
T Consensus 423 L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l 502 (768)
T 3rgz_A 423 LHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRL 502 (768)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCC
T ss_pred EECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCcc
Confidence 56677777766777777777777777777777766777777777777777777777767777777777777777777776
Q ss_pred cCc----------cceEEeccccccccCCCCCcCCCCCccEEEccCccccccCCCcchhhh-------------------
Q 042000 82 EGL----------IPILDISDNNISGRLPSCTFSNCSSLVTLDLSYNRINGSIPEWNIAYI------------------- 132 (249)
Q Consensus 82 ~~~----------~~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~------------------- 132 (249)
.+. +..+++++|.+.+.+|. .+..+++|++|++++|.+.+.+|...+...
T Consensus 503 ~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~-~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~ 581 (768)
T 3rgz_A 503 TGEIPKWIGRLENLAILKLSNNSFSGNIPA-ELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKND 581 (768)
T ss_dssp CSCCCGGGGGCTTCCEEECCSSCCEEECCG-GGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECC
T ss_pred CCcCChHHhcCCCCCEEECCCCcccCcCCH-HHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccc
Confidence 643 44577788877766666 677788888888888888777665432100
Q ss_pred --------------------------------------------cccchhcccceEEcccCeecccCCcccCCCCCccEE
Q 042000 133 --------------------------------------------YQGKVLSLLSGLDLSCNKLISHIPPQIGNLTRIETL 168 (249)
Q Consensus 133 --------------------------------------------~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 168 (249)
.....+.+|+.|++++|.++...|..++.++.|+.|
T Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L 661 (768)
T 3rgz_A 582 GMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFIL 661 (768)
T ss_dssp SCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEE
T ss_pred cccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEE
Confidence 001123567788888888877778888888888888
Q ss_pred eCCCCCCccCCchhccCCcccCEEEeeCCcccCCcChhhhcCCCccEEEccccccccCCChhhhhhcccccccccCCccc
Q 042000 169 NLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLAIFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFL 248 (249)
Q Consensus 169 ~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~n~~~ 248 (249)
++++|.+++.+|..++.+++|+.|++++|++++.+|..+..+++|++|++++|++++.+|.. +++.++....+.|||.+
T Consensus 662 ~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~~L 740 (768)
T 3rgz_A 662 NLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNPGL 740 (768)
T ss_dssp ECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS-SSGGGSCGGGGCSCTEE
T ss_pred eCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc-hhhccCCHHHhcCCchh
Confidence 88888888888888888888888888888888888888888888888888888888777763 45666777778888877
Q ss_pred C
Q 042000 249 C 249 (249)
Q Consensus 249 c 249 (249)
|
T Consensus 741 c 741 (768)
T 3rgz_A 741 C 741 (768)
T ss_dssp E
T ss_pred c
Confidence 7
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.98 E-value=3.9e-31 Score=230.38 Aligned_cols=238 Identities=31% Similarity=0.437 Sum_probs=185.3
Q ss_pred eEeeccccCCCCCCCCCCCCcccEEEccCccCCCCCCccccCCCCCCeEEccCccccccccccccccCCCCeEeCCCCcC
Q 042000 2 LVLSNNSLNGHMFPRNFNLTNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPENHL 81 (249)
Q Consensus 2 l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 81 (249)
|++++|.+++.+|..+.++++|++|++++|.+.+..|..++++++|++|++++|.+.+..|..+..+++|++|++++|.+
T Consensus 399 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l 478 (768)
T 3rgz_A 399 LYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDL 478 (768)
T ss_dssp EECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCC
T ss_pred EECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcc
Confidence 55666666666666666777777777777777666666777777777777777777666677777777777777777766
Q ss_pred cCc----------cceEEeccccccccCCCCCcCCCCCccEEEccCccccccCCCcchhhhcccchhcccceEEcccCee
Q 042000 82 EGL----------IPILDISDNNISGRLPSCTFSNCSSLVTLDLSYNRINGSIPEWNIAYIYQGKVLSLLSGLDLSCNKL 151 (249)
Q Consensus 82 ~~~----------~~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 151 (249)
.+. +..+++++|.+.+.+|. .+..+++|++|++++|.+.+.+|.. ...+++|++|++++|.+
T Consensus 479 ~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~-~~~~l~~L~~L~L~~N~l~~~~p~~-------l~~l~~L~~L~Ls~N~l 550 (768)
T 3rgz_A 479 TGEIPSGLSNCTNLNWISLSNNRLTGEIPK-WIGRLENLAILKLSNNSFSGNIPAE-------LGDCRSLIWLDLNTNLF 550 (768)
T ss_dssp CSCCCGGGGGCTTCCEEECCSSCCCSCCCG-GGGGCTTCCEEECCSSCCEEECCGG-------GGGCTTCCEEECCSSEE
T ss_pred cCcCCHHHhcCCCCCEEEccCCccCCcCCh-HHhcCCCCCEEECCCCcccCcCCHH-------HcCCCCCCEEECCCCcc
Confidence 533 44577777777756665 6667777778888777777666652 23467889999998887
Q ss_pred cccCCc----------------------------------------------------------------------ccCC
Q 042000 152 ISHIPP----------------------------------------------------------------------QIGN 161 (249)
Q Consensus 152 ~~~~~~----------------------------------------------------------------------~l~~ 161 (249)
....|. .+..
T Consensus 551 ~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~ 630 (768)
T 3rgz_A 551 NGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDN 630 (768)
T ss_dssp ESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSS
T ss_pred CCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhc
Confidence 643332 2334
Q ss_pred CCCccEEeCCCCCCccCCchhccCCcccCEEEeeCCcccCCcChhhhcCCCccEEEccccccccCCChhhhhhccccccc
Q 042000 162 LTRIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLAIFSVAYNNLSGEIPEWTAQFATFNESS 241 (249)
Q Consensus 162 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~ 241 (249)
+++|+.|++++|.+.+.+|..++.++.|+.|++++|.+++.+|..+..+++|++||+++|++++.+|..+..++.|+.++
T Consensus 631 l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ 710 (768)
T 3rgz_A 631 NGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEID 710 (768)
T ss_dssp SBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEE
T ss_pred cccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEE
Confidence 57789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcc
Q 042000 242 YEGNTF 247 (249)
Q Consensus 242 l~~n~~ 247 (249)
+++|++
T Consensus 711 ls~N~l 716 (768)
T 3rgz_A 711 LSNNNL 716 (768)
T ss_dssp CCSSEE
T ss_pred CcCCcc
Confidence 999975
No 4
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.98 E-value=6.4e-31 Score=216.51 Aligned_cols=249 Identities=23% Similarity=0.237 Sum_probs=181.8
Q ss_pred CeEeeccccCCCCCCCCCCCCcccEEEccCccCCCC-CCccccCCCCCCeEEccCccccccccccccccCCCCeEeCCCC
Q 042000 1 SLVLSNNSLNGHMFPRNFNLTNLRWLQLDGNHFVGE-NPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPEN 79 (249)
Q Consensus 1 ~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 79 (249)
+|+|++|.+++..+..+.++++|++|++++|.+.+. .+.+|+++++|++|++++|.+.+..|..|.++++|++|++++|
T Consensus 34 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 113 (455)
T 3v47_A 34 YVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQC 113 (455)
T ss_dssp EEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTS
T ss_pred EEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCC
Confidence 478999999887788899999999999999987643 4567888999999999999888777888888999999999988
Q ss_pred cCcCc------------cceEEeccccccccCCCCCcCCCCCccEEEccCccccccCCCcchhh----------------
Q 042000 80 HLEGL------------IPILDISDNNISGRLPSCTFSNCSSLVTLDLSYNRINGSIPEWNIAY---------------- 131 (249)
Q Consensus 80 ~~~~~------------~~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~---------------- 131 (249)
.+.+. ++.+++++|.+.+..+...+..+++|++|++++|.+.+..+......
T Consensus 114 ~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~ 193 (455)
T 3v47_A 114 NLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQ 193 (455)
T ss_dssp CCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCT
T ss_pred CCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCccc
Confidence 87641 55688888888744444336777778888887777664433211000
Q ss_pred --------------------------------------------------------------------------------
Q 042000 132 -------------------------------------------------------------------------------- 131 (249)
Q Consensus 132 -------------------------------------------------------------------------------- 131 (249)
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (455)
T 3v47_A 194 DMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLE 273 (455)
T ss_dssp TCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGT
T ss_pred ccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccccccccc
Confidence
Q ss_pred ------------------hcccchhcccceEEcccCeecccCCcccCCCCCccEEeCCCCCCccCCchhccCCcccCEEE
Q 042000 132 ------------------IYQGKVLSLLSGLDLSCNKLISHIPPQIGNLTRIETLNLSHNNLTGSIPSTFSNLKHVESLD 193 (249)
Q Consensus 132 ------------------~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~ 193 (249)
......+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|++|+
T Consensus 274 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 353 (455)
T 3v47_A 274 ASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLD 353 (455)
T ss_dssp TSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEE
T ss_pred ccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEE
Confidence 00011234455666666665555555666667777777777777655566777778888888
Q ss_pred eeCCcccCCcChhhhcCCCccEEEccccccccCCChhhhhhcccccccccCCcccC
Q 042000 194 LSNNKLNGKIPHQLVELKTLAIFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLC 249 (249)
Q Consensus 194 l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~n~~~c 249 (249)
+++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|+.+++++|++.|
T Consensus 354 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 409 (455)
T 3v47_A 354 LSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 409 (455)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCccc
Confidence 88888876667778888888888888888886555666788888888888888876
No 5
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.97 E-value=1.1e-30 Score=214.92 Aligned_cols=225 Identities=24% Similarity=0.244 Sum_probs=172.9
Q ss_pred eEeeccccCCCCCCCCCCCCcccEEEccCccCCCCCCccccCCCCCCeEEccCccccccccccccccCCCCeEeCCCCcC
Q 042000 2 LVLSNNSLNGHMFPRNFNLTNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPENHL 81 (249)
Q Consensus 2 l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 81 (249)
|+|++|.+++..+..|.++++|++|++++|.+.+..+.+|.++++|++|++++|.+....+..|..+++|++|++++|.+
T Consensus 80 L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 159 (452)
T 3zyi_A 80 LNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPI 159 (452)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCC
T ss_pred EECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCc
Confidence 56666666655566666666666666666666655555666666666666666666544444566666666666666655
Q ss_pred cCccceEEeccccccccCCCCCcCCCCCccEEEccCccccccCCCcchhhhcccchhcccceEEcccCeecccCCcccCC
Q 042000 82 EGLIPILDISDNNISGRLPSCTFSNCSSLVTLDLSYNRINGSIPEWNIAYIYQGKVLSLLSGLDLSCNKLISHIPPQIGN 161 (249)
Q Consensus 82 ~~~~~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ 161 (249)
. .++...+..+++|++|+++++...+.++... ...+.+|++|++++|.+.+. + .+..
T Consensus 160 ~---------------~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~------~~~l~~L~~L~L~~n~l~~~-~-~~~~ 216 (452)
T 3zyi_A 160 E---------------SIPSYAFNRVPSLMRLDLGELKKLEYISEGA------FEGLFNLKYLNLGMCNIKDM-P-NLTP 216 (452)
T ss_dssp C---------------EECTTTTTTCTTCCEEECCCCTTCCEECTTT------TTTCTTCCEEECTTSCCSSC-C-CCTT
T ss_pred c---------------eeCHhHHhcCCcccEEeCCCCCCccccChhh------ccCCCCCCEEECCCCccccc-c-cccc
Confidence 5 5555578899999999999865444444321 23467899999999998764 3 5778
Q ss_pred CCCccEEeCCCCCCccCCchhccCCcccCEEEeeCCcccCCcChhhhcCCCccEEEccccccccCCChhhhhhccccccc
Q 042000 162 LTRIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLAIFSVAYNNLSGEIPEWTAQFATFNESS 241 (249)
Q Consensus 162 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~ 241 (249)
+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|+.++
T Consensus 217 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 296 (452)
T 3zyi_A 217 LVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELH 296 (452)
T ss_dssp CTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEE
T ss_pred cccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEE
Confidence 89999999999999988889999999999999999999988888999999999999999999976667788899999999
Q ss_pred ccCCcccC
Q 042000 242 YEGNTFLC 249 (249)
Q Consensus 242 l~~n~~~c 249 (249)
+++||+.|
T Consensus 297 L~~Np~~C 304 (452)
T 3zyi_A 297 LHHNPWNC 304 (452)
T ss_dssp CCSSCEEC
T ss_pred ccCCCcCC
Confidence 99999988
No 6
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.97 E-value=1.6e-30 Score=213.26 Aligned_cols=225 Identities=25% Similarity=0.287 Sum_probs=170.8
Q ss_pred eEeeccccCCCCCCCCCCCCcccEEEccCccCCCCCCccccCCCCCCeEEccCccccccccccccccCCCCeEeCCCCcC
Q 042000 2 LVLSNNSLNGHMFPRNFNLTNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPENHL 81 (249)
Q Consensus 2 l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 81 (249)
|+|++|.++...+..|.++++|++|++++|.+....+.+|.++++|++|++++|.+....+..|..+++|++|++++|.+
T Consensus 69 L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i 148 (440)
T 3zyj_A 69 LNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPI 148 (440)
T ss_dssp EECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCC
T ss_pred EEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcc
Confidence 45666666655555566666666666666666555555566666666666666666544444556666666666666655
Q ss_pred cCccceEEeccccccccCCCCCcCCCCCccEEEccCccccccCCCcchhhhcccchhcccceEEcccCeecccCCcccCC
Q 042000 82 EGLIPILDISDNNISGRLPSCTFSNCSSLVTLDLSYNRINGSIPEWNIAYIYQGKVLSLLSGLDLSCNKLISHIPPQIGN 161 (249)
Q Consensus 82 ~~~~~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ 161 (249)
. .++...+..+++|++|+++++...+.++... ...+++|++|++++|.++. .+ .+..
T Consensus 149 ~---------------~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~------~~~l~~L~~L~L~~n~l~~-~~-~~~~ 205 (440)
T 3zyj_A 149 E---------------SIPSYAFNRIPSLRRLDLGELKRLSYISEGA------FEGLSNLRYLNLAMCNLRE-IP-NLTP 205 (440)
T ss_dssp C---------------EECTTTTTTCTTCCEEECCCCTTCCEECTTT------TTTCSSCCEEECTTSCCSS-CC-CCTT
T ss_pred c---------------ccCHHHhhhCcccCEeCCCCCCCcceeCcch------hhcccccCeecCCCCcCcc-cc-ccCC
Confidence 5 5555578899999999999865444444321 2347889999999999875 33 4778
Q ss_pred CCCccEEeCCCCCCccCCchhccCCcccCEEEeeCCcccCCcChhhhcCCCccEEEccccccccCCChhhhhhccccccc
Q 042000 162 LTRIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLAIFSVAYNNLSGEIPEWTAQFATFNESS 241 (249)
Q Consensus 162 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~ 241 (249)
+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|+.++
T Consensus 206 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 285 (440)
T 3zyj_A 206 LIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIH 285 (440)
T ss_dssp CSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEE
T ss_pred CcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEE
Confidence 89999999999999987788999999999999999999988888999999999999999999977677788999999999
Q ss_pred ccCCcccC
Q 042000 242 YEGNTFLC 249 (249)
Q Consensus 242 l~~n~~~c 249 (249)
+++|||.|
T Consensus 286 L~~Np~~C 293 (440)
T 3zyj_A 286 LHHNPWNC 293 (440)
T ss_dssp CCSSCEEC
T ss_pred cCCCCccC
Confidence 99999988
No 7
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.97 E-value=3e-30 Score=213.74 Aligned_cols=247 Identities=20% Similarity=0.183 Sum_probs=186.3
Q ss_pred CeEeeccccCCCCCCCCCCCCcccEEEccCccCCCCCCccccCCCCCCeEEccCccccccccccccccCCCCeEeCCCCc
Q 042000 1 SLVLSNNSLNGHMFPRNFNLTNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPENH 80 (249)
Q Consensus 1 ~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 80 (249)
+|+|++|.+++..+..|.++++|++|++++|.+....+..|+++++|++|++++|.+....+..|..+++|++|++++|.
T Consensus 60 ~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~ 139 (477)
T 2id5_A 60 ELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDND 139 (477)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTT
T ss_pred EEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCc
Confidence 37788888887778888888888888888888876666667788888888888888876667777778888888887776
Q ss_pred CcCc----------cceEEeccccccccCCCCCcCCCCCccEEEccCccccccCCCcchhhh------------------
Q 042000 81 LEGL----------IPILDISDNNISGRLPSCTFSNCSSLVTLDLSYNRINGSIPEWNIAYI------------------ 132 (249)
Q Consensus 81 ~~~~----------~~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~------------------ 132 (249)
+... +..+++++|.+. .++...+..+++|+.|++++|.+.+..+.. +...
T Consensus 140 l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~ 217 (477)
T 2id5_A 140 LVYISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYS-FKRLYRLKVLEISHWPYLDTMT 217 (477)
T ss_dssp CCEECTTSSTTCTTCCEEEEESCCCS-SCCHHHHTTCTTCCEEEEESCCCCEECTTC-SCSCTTCCEEEEECCTTCCEEC
T ss_pred cceeChhhccCCCCCCEEECCCCcCc-ccChhHhcccCCCcEEeCCCCcCcEeChhh-cccCcccceeeCCCCccccccC
Confidence 5432 445666666665 333334555566666666665554321110 0000
Q ss_pred cccchhcccceEEcccCeecccCCcccCCCCCccEEeCCCCCCccCCchhccCCcccCEEEeeCCcccCCcChhhhcCCC
Q 042000 133 YQGKVLSLLSGLDLSCNKLISHIPPQIGNLTRIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKT 212 (249)
Q Consensus 133 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~ 212 (249)
.......+|++|++++|.++......+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++
T Consensus 218 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 297 (477)
T 2id5_A 218 PNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNY 297 (477)
T ss_dssp TTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTT
T ss_pred cccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCccc
Confidence 00011236888888888887654456788999999999999999777778899999999999999999888999999999
Q ss_pred ccEEEccccccccCCChhhhhhcccccccccCCcccC
Q 042000 213 LAIFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLC 249 (249)
Q Consensus 213 L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~n~~~c 249 (249)
|+.|++++|.+++..+..+..+++|+.+++++||+.|
T Consensus 298 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c 334 (477)
T 2id5_A 298 LRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLAC 334 (477)
T ss_dssp CCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEEC
T ss_pred CCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccC
Confidence 9999999999997666778899999999999999987
No 8
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.97 E-value=1.1e-29 Score=196.88 Aligned_cols=223 Identities=22% Similarity=0.244 Sum_probs=189.1
Q ss_pred eEeeccccCCCCCCCCCCCCcccEEEccCccCCCCCCccccCCCCCCeEEccCccccccccccccccCCCCeEeCCCCc-
Q 042000 2 LVLSNNSLNGHMFPRNFNLTNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPENH- 80 (249)
Q Consensus 2 l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~- 80 (249)
++.+++.++ .+|..+ .+++++|++++|.+....+..|+.+++|++|++++|.+.+..+..+..+++|++|++++|.
T Consensus 16 ~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 92 (285)
T 1ozn_A 16 TSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92 (285)
T ss_dssp EECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred EEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCC
Confidence 567777787 556554 3789999999999987777789999999999999999987778899999999999999986
Q ss_pred CcCccceEEeccccccccCCCCCcCCCCCccEEEccCccccccCCCcchhhhcccchhcccceEEcccCeecccCCcccC
Q 042000 81 LEGLIPILDISDNNISGRLPSCTFSNCSSLVTLDLSYNRINGSIPEWNIAYIYQGKVLSLLSGLDLSCNKLISHIPPQIG 160 (249)
Q Consensus 81 ~~~~~~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~ 160 (249)
+. .++...+..+++|++|++++|.+.+..+.. ...+++|++|++++|.++...+..+.
T Consensus 93 l~---------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-------~~~l~~L~~L~l~~n~l~~~~~~~~~ 150 (285)
T 1ozn_A 93 LR---------------SVDPATFHGLGRLHTLHLDRCGLQELGPGL-------FRGLAALQYLYLQDNALQALPDDTFR 150 (285)
T ss_dssp CC---------------CCCTTTTTTCTTCCEEECTTSCCCCCCTTT-------TTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred cc---------------ccCHHHhcCCcCCCEEECCCCcCCEECHhH-------hhCCcCCCEEECCCCcccccCHhHhc
Confidence 66 454447888999999999999987543331 23467899999999998877777788
Q ss_pred CCCCccEEeCCCCCCccCCchhccCCcccCEEEeeCCcccCCcChhhhcCCCccEEEccccccccCCChhhhhhcccccc
Q 042000 161 NLTRIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLAIFSVAYNNLSGEIPEWTAQFATFNES 240 (249)
Q Consensus 161 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l 240 (249)
.+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|+.+
T Consensus 151 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 230 (285)
T 1ozn_A 151 DLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYL 230 (285)
T ss_dssp TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEE
T ss_pred cCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEE
Confidence 89999999999999986566678889999999999999998888999999999999999999997666778899999999
Q ss_pred cccCCcccC
Q 042000 241 SYEGNTFLC 249 (249)
Q Consensus 241 ~l~~n~~~c 249 (249)
++++|++.|
T Consensus 231 ~l~~N~~~c 239 (285)
T 1ozn_A 231 RLNDNPWVC 239 (285)
T ss_dssp ECCSSCEEC
T ss_pred eccCCCccC
Confidence 999999987
No 9
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.97 E-value=8.3e-30 Score=199.49 Aligned_cols=237 Identities=20% Similarity=0.242 Sum_probs=177.2
Q ss_pred eEeeccccCCCCCCCCCCCCcccEEEccCccCCCCCCccccCCCCCCeEEccCcccccc--ccccccccCCCCeEeCCCC
Q 042000 2 LVLSNNSLNGHMFPRNFNLTNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGK--IPRWLGNLTRLNHIIMPEN 79 (249)
Q Consensus 2 l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~ 79 (249)
++.+++.++ .+|..+. +++++|++++|.+....+..|+++++|++|++++|.+... .+..+..+++|++|++++|
T Consensus 12 l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n 88 (306)
T 2z66_A 12 IRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88 (306)
T ss_dssp EECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC
T ss_pred EEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCC
Confidence 445555555 4444443 5677777777776644444566677777777777766522 2445556677777777776
Q ss_pred cCcCc---------cceEEeccccccccCCC-CCcCCCCCccEEEccCccccccCCCcchhhhcccchhcccceEEcccC
Q 042000 80 HLEGL---------IPILDISDNNISGRLPS-CTFSNCSSLVTLDLSYNRINGSIPEWNIAYIYQGKVLSLLSGLDLSCN 149 (249)
Q Consensus 80 ~~~~~---------~~~l~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 149 (249)
.+... ++.++++++.+. .++. ..+..+++|++|++++|.+.+..+.. ...+++|++|++++|
T Consensus 89 ~i~~l~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-------~~~l~~L~~L~l~~n 160 (306)
T 2z66_A 89 GVITMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTRVAFNGI-------FNGLSSLEVLKMAGN 160 (306)
T ss_dssp SEEEEEEEEETCTTCCEEECTTSEEE-SSTTTTTTTTCTTCCEEECTTSCCEECSTTT-------TTTCTTCCEEECTTC
T ss_pred ccccChhhcCCCCCCCEEECCCCccc-ccccchhhhhccCCCEEECCCCcCCccchhh-------cccCcCCCEEECCCC
Confidence 65432 445666666666 4432 46888999999999999887544431 133678999999999
Q ss_pred eecc-cCCcccCCCCCccEEeCCCCCCccCCchhccCCcccCEEEeeCCcccCCcChhhhcCCCccEEEccccccccCCC
Q 042000 150 KLIS-HIPPQIGNLTRIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLAIFSVAYNNLSGEIP 228 (249)
Q Consensus 150 ~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 228 (249)
.+.+ ..+..+..+++|+.|++++|.+.+..|..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++..+
T Consensus 161 ~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 240 (306)
T 2z66_A 161 SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK 240 (306)
T ss_dssp EEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSS
T ss_pred ccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCH
Confidence 9876 567788889999999999999997778888999999999999999987777788889999999999999998888
Q ss_pred hhhhhhc-ccccccccCCcccC
Q 042000 229 EWTAQFA-TFNESSYEGNTFLC 249 (249)
Q Consensus 229 ~~~~~~~-~l~~l~l~~n~~~c 249 (249)
..+..++ +|+.+++++|++.|
T Consensus 241 ~~~~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 241 QELQHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp SSCCCCCTTCCEEECTTCCEEC
T ss_pred HHHHhhhccCCEEEccCCCeec
Confidence 8888884 89999999999876
No 10
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.97 E-value=2.5e-29 Score=198.35 Aligned_cols=228 Identities=20% Similarity=0.269 Sum_probs=193.1
Q ss_pred CeEeeccccCCCCCCCCCCCCcccEEEccCccCCCCCCccccCCCCCCeEEccCccccccccccccccCCCCeEeCCCCc
Q 042000 1 SLVLSNNSLNGHMFPRNFNLTNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPENH 80 (249)
Q Consensus 1 ~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 80 (249)
+|+|++|.++ .+|+.++++++|++|++++|.+. .+|..++++++|++|++++|.+. .+|..+..+++|++|++++|.
T Consensus 85 ~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~ 161 (328)
T 4fcg_A 85 ALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACP 161 (328)
T ss_dssp EEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEET
T ss_pred EEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCC
Confidence 4799999998 88888999999999999999998 78888999999999999999998 788899999999999999876
Q ss_pred CcCccceEEeccccccccCCCCCcCCCCCccEEEccCccccccCCCcchhhhcccchhcccceEEcccCeecccCCcccC
Q 042000 81 LEGLIPILDISDNNISGRLPSCTFSNCSSLVTLDLSYNRINGSIPEWNIAYIYQGKVLSLLSGLDLSCNKLISHIPPQIG 160 (249)
Q Consensus 81 ~~~~~~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~ 160 (249)
+...++.- +.. ..+.. .+..+++|++|++++|.+. .+|.. ...+++|++|++++|.++. .+..+.
T Consensus 162 ~~~~~p~~-~~~----~~~~~-~~~~l~~L~~L~L~~n~l~-~lp~~-------l~~l~~L~~L~L~~N~l~~-l~~~l~ 226 (328)
T 4fcg_A 162 ELTELPEP-LAS----TDASG-EHQGLVNLQSLRLEWTGIR-SLPAS-------IANLQNLKSLKIRNSPLSA-LGPAIH 226 (328)
T ss_dssp TCCCCCSC-SEE----EC-CC-CEEESTTCCEEEEEEECCC-CCCGG-------GGGCTTCCEEEEESSCCCC-CCGGGG
T ss_pred CccccChh-Hhh----ccchh-hhccCCCCCEEECcCCCcC-cchHh-------hcCCCCCCEEEccCCCCCc-Cchhhc
Confidence 55322210 000 01111 3456899999999999987 55542 2347789999999999875 666788
Q ss_pred CCCCccEEeCCCCCCccCCchhccCCcccCEEEeeCCcccCCcChhhhcCCCccEEEccccccccCCChhhhhhcccccc
Q 042000 161 NLTRIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLAIFSVAYNNLSGEIPEWTAQFATFNES 240 (249)
Q Consensus 161 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l 240 (249)
.+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+.+|..+..+++++.+
T Consensus 227 ~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l 306 (328)
T 4fcg_A 227 HLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCII 306 (328)
T ss_dssp GCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEE
T ss_pred cCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEE
Confidence 99999999999999998899999999999999999999998999999999999999999999999999999999999999
Q ss_pred cccCCc
Q 042000 241 SYEGNT 246 (249)
Q Consensus 241 ~l~~n~ 246 (249)
.+..+.
T Consensus 307 ~l~~~~ 312 (328)
T 4fcg_A 307 LVPPHL 312 (328)
T ss_dssp ECCGGG
T ss_pred eCCHHH
Confidence 887664
No 11
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.97 E-value=4.6e-29 Score=212.33 Aligned_cols=246 Identities=24% Similarity=0.292 Sum_probs=170.9
Q ss_pred CeEeeccccCCCCCCCCCCCCcccEEEccCccCCCCCCccccCCCCCCeEEccCccccccccc-cccccCCCCeEeCCCC
Q 042000 1 SLVLSNNSLNGHMFPRNFNLTNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGKIPR-WLGNLTRLNHIIMPEN 79 (249)
Q Consensus 1 ~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~ 79 (249)
+|++++|.++ .+|..+.++++|++|++++|.+.+..+..++++++|++|++++|.+.+..+. .+..+++|++|++++|
T Consensus 282 ~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n 360 (606)
T 3t6q_A 282 ELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHD 360 (606)
T ss_dssp EEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSS
T ss_pred EEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCC
Confidence 3678888887 6777788888888888888877765566667777777777777765533332 3556666666666666
Q ss_pred cCcCc------------cceEEeccccccccCCCCCcCCCCCccEEEccCccccccCCCcchhh----------------
Q 042000 80 HLEGL------------IPILDISDNNISGRLPSCTFSNCSSLVTLDLSYNRINGSIPEWNIAY---------------- 131 (249)
Q Consensus 80 ~~~~~------------~~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~---------------- 131 (249)
.+... +..+++++|.+.+..+. .+..+++|++|++++|.+.+..+...+..
T Consensus 361 ~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~ 439 (606)
T 3t6q_A 361 DIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTE-AFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDI 439 (606)
T ss_dssp CCCEEEESTTTTTTCTTCCEEECCSCSCEEECTT-TTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBT
T ss_pred ccccccCcchhcccCCCCCEEECCCCcCCcCCHH-HhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCC
Confidence 54332 33455555554422222 44444555555555544443222110000
Q ss_pred --hcccchhcccceEEcccCeeccc---CCcccCCCCCccEEeCCCCCCccCCchhccCCcccCEEEeeCCcccCCcChh
Q 042000 132 --IYQGKVLSLLSGLDLSCNKLISH---IPPQIGNLTRIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQ 206 (249)
Q Consensus 132 --~~~~~~~~~L~~L~l~~~~~~~~---~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~ 206 (249)
......+++|++|++++|.+.+. .+..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|++.+..|+.
T Consensus 440 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 519 (606)
T 3t6q_A 440 SSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEA 519 (606)
T ss_dssp TCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGG
T ss_pred cCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhH
Confidence 00112356788888888877542 2345777888899999999888777888889999999999999999888999
Q ss_pred hhcCCCccEEEccccccccCCChhhhhhcccccccccCCcccC
Q 042000 207 LVELKTLAIFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLC 249 (249)
Q Consensus 207 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~n~~~c 249 (249)
+..+++| .|++++|.+++..|..+..+++|+.+++++||+.|
T Consensus 520 l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 561 (606)
T 3t6q_A 520 LSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561 (606)
T ss_dssp GTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEEC
T ss_pred hCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccc
Confidence 9999999 99999999998788889999999999999999988
No 12
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=4.8e-28 Score=191.41 Aligned_cols=232 Identities=25% Similarity=0.335 Sum_probs=164.0
Q ss_pred eEeeccccCCCCCCCCCCCCcccEEEccCccCCCCCCccccCCCCCCeEEccCccccccccccccccCCCCeEeCCCCcC
Q 042000 2 LVLSNNSLNGHMFPRNFNLTNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPENHL 81 (249)
Q Consensus 2 l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 81 (249)
|++++|.+++..+..+.++++|++|++++|.+.+..|.+|+++++|++|++++|.+. .+|..+. ++|++|++++|.+
T Consensus 57 L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l 133 (330)
T 1xku_A 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEI 133 (330)
T ss_dssp EECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEECCSSCC
T ss_pred EECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEECCCCcc
Confidence 667777777655556777777777777777777666667777777777777777766 4444433 5677777777766
Q ss_pred cCc----------cceEEeccccccc-cCCCCCcCCCCCccEEEccCccccccCCCcchhhhcccchhcccceEEcccCe
Q 042000 82 EGL----------IPILDISDNNISG-RLPSCTFSNCSSLVTLDLSYNRINGSIPEWNIAYIYQGKVLSLLSGLDLSCNK 150 (249)
Q Consensus 82 ~~~----------~~~l~l~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 150 (249)
... +..++++.|.+.. ......+..+++|++|++++|.+. .+|.. ..++|++|++++|.
T Consensus 134 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~---------~~~~L~~L~l~~n~ 203 (330)
T 1xku_A 134 TKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQG---------LPPSLTELHLDGNK 203 (330)
T ss_dssp CBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSS---------CCTTCSEEECTTSC
T ss_pred cccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cCCcc---------ccccCCEEECCCCc
Confidence 543 4456677666642 122235667777777777777765 33331 12568888888888
Q ss_pred ecccCCcccCCCCCccEEeCCCCCCccCCchhccCCcccCEEEeeCCcccCCcChhhhcCCCccEEEccccccccCCChh
Q 042000 151 LISHIPPQIGNLTRIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLAIFSVAYNNLSGEIPEW 230 (249)
Q Consensus 151 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 230 (249)
++...+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+. .+|..+..+++|++|++++|.+++..+..
T Consensus 204 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~ 282 (330)
T 1xku_A 204 ITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSND 282 (330)
T ss_dssp CCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTS
T ss_pred CCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhh
Confidence 87766777888888888888888888666667778888888888888887 67777888888888888888888554444
Q ss_pred hhh------hcccccccccCCcc
Q 042000 231 TAQ------FATFNESSYEGNTF 247 (249)
Q Consensus 231 ~~~------~~~l~~l~l~~n~~ 247 (249)
+.. .+.++.+++.+||+
T Consensus 283 f~~~~~~~~~~~l~~l~l~~N~~ 305 (330)
T 1xku_A 283 FCPPGYNTKKASYSGVSLFSNPV 305 (330)
T ss_dssp SSCSSCCTTSCCCSEEECCSSSS
T ss_pred cCCcccccccccccceEeecCcc
Confidence 432 36677788888875
No 13
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=2.5e-29 Score=200.53 Aligned_cols=234 Identities=20% Similarity=0.267 Sum_probs=156.0
Q ss_pred EeeccccCCCCCCCCCCCCcccEEEccCccCCCCCCccccCCCCCCeEEccCccccccccccccccCCCCeEeCCCCcCc
Q 042000 3 VLSNNSLNGHMFPRNFNLTNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPENHLE 82 (249)
Q Consensus 3 ~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 82 (249)
+.+++.++ .+|..+. ++|++|++++|.+.+..+..|+++++|++|++++|.+.+..+..|..+++|++|++++|.+.
T Consensus 37 ~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 113 (353)
T 2z80_A 37 KGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 113 (353)
T ss_dssp ECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred eCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCC
Confidence 34444454 3444433 35555666655555444445555555666666555555444445555555666666555544
Q ss_pred Cc----------cceEEeccccccccCCC-CCcCCCCCccEEEccCcc-ccccCCCcchhhhcccchhcccceEEcccCe
Q 042000 83 GL----------IPILDISDNNISGRLPS-CTFSNCSSLVTLDLSYNR-INGSIPEWNIAYIYQGKVLSLLSGLDLSCNK 150 (249)
Q Consensus 83 ~~----------~~~l~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 150 (249)
.. ++.+++++|.+. .++. ..+..+++|++|++++|. +. .++.. ....+++|++|++++|.
T Consensus 114 ~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~------~~~~l~~L~~L~l~~n~ 185 (353)
T 2z80_A 114 NLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFT-KIQRK------DFAGLTFLEELEIDASD 185 (353)
T ss_dssp SCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCC-EECTT------TTTTCCEEEEEEEEETT
T ss_pred cCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCcccc-ccCHH------HccCCCCCCEEECCCCC
Confidence 32 334555555555 5554 467788888888888874 43 22221 11336778888888888
Q ss_pred ecccCCcccCCCCCccEEeCCCCCCccCCch-hccCCcccCEEEeeCCcccCC---------------------------
Q 042000 151 LISHIPPQIGNLTRIETLNLSHNNLTGSIPS-TFSNLKHVESLDLSNNKLNGK--------------------------- 202 (249)
Q Consensus 151 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~l~l~~n~~~~~--------------------------- 202 (249)
+....+..+..+++|++|++++|.+.. .+. .+..+++|+.|++++|.+.+.
T Consensus 186 l~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~ 264 (353)
T 2z80_A 186 LQSYEPKSLKSIQNVSHLILHMKQHIL-LLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDE 264 (353)
T ss_dssp CCEECTTTTTTCSEEEEEEEECSCSTT-HHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHH
T ss_pred cCccCHHHHhccccCCeecCCCCcccc-chhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCc
Confidence 877777788888888888888888863 443 344578888888888887652
Q ss_pred ----cChhhhcCCCccEEEccccccccCCChh-hhhhcccccccccCCcccC
Q 042000 203 ----IPHQLVELKTLAIFSVAYNNLSGEIPEW-TAQFATFNESSYEGNTFLC 249 (249)
Q Consensus 203 ----~~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~~~~l~~l~l~~n~~~c 249 (249)
+|..+..+++|+.|++++|.++ .+|.. +..+++|+.+++++|++.|
T Consensus 265 ~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~ 315 (353)
T 2z80_A 265 SLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDC 315 (353)
T ss_dssp HHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred chhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccC
Confidence 3456788999999999999999 56655 5899999999999999987
No 14
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.96 E-value=2.2e-28 Score=191.86 Aligned_cols=217 Identities=29% Similarity=0.444 Sum_probs=192.8
Q ss_pred CcccEEEccCccCCC--CCCccccCCCCCCeEEccC-ccccccccccccccCCCCeEeCCCCcCcCc----------cce
Q 042000 21 TNLRWLQLDGNHFVG--ENPQSLSKCSSLEGLYLNN-NSLSGKIPRWLGNLTRLNHIIMPENHLEGL----------IPI 87 (249)
Q Consensus 21 ~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~----------~~~ 87 (249)
.+++.|+++++.+.+ ..|..++++++|++|++++ |.+.+..|..+..+++|++|++++|.+.+. ++.
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 579999999999998 7889999999999999995 888888999999999999999999988633 567
Q ss_pred EEeccccccccCCCCCcCCCCCccEEEccCccccccCCCcchhhhcccchhc-ccceEEcccCeecccCCcccCCCCCcc
Q 042000 88 LDISDNNISGRLPSCTFSNCSSLVTLDLSYNRINGSIPEWNIAYIYQGKVLS-LLSGLDLSCNKLISHIPPQIGNLTRIE 166 (249)
Q Consensus 88 l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~l~~~~~L~ 166 (249)
+++++|.+.+.++. .+..+++|++|++++|.+.+.+|... ..+. .|++|++++|.+....+..+..++ |+
T Consensus 130 L~Ls~N~l~~~~p~-~~~~l~~L~~L~L~~N~l~~~~p~~l-------~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~ 200 (313)
T 1ogq_A 130 LDFSYNALSGTLPP-SISSLPNLVGITFDGNRISGAIPDSY-------GSFSKLFTSMTISRNRLTGKIPPTFANLN-LA 200 (313)
T ss_dssp EECCSSEEESCCCG-GGGGCTTCCEEECCSSCCEEECCGGG-------GCCCTTCCEEECCSSEEEEECCGGGGGCC-CS
T ss_pred EeCCCCccCCcCCh-HHhcCCCCCeEECcCCcccCcCCHHH-------hhhhhcCcEEECcCCeeeccCChHHhCCc-cc
Confidence 99999999866776 78899999999999999987776532 2244 799999999999878888888887 99
Q ss_pred EEeCCCCCCccCCchhccCCcccCEEEeeCCcccCCcChhhhcCCCccEEEccccccccCCChhhhhhcccccccccCCc
Q 042000 167 TLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLAIFSVAYNNLSGEIPEWTAQFATFNESSYEGNT 246 (249)
Q Consensus 167 ~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~n~ 246 (249)
.|++++|.+.+..|..+..+++|+.|++++|.+.+..+. +..+++|++|++++|.+++.+|..+..+++|+.+++++|.
T Consensus 201 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 279 (313)
T 1ogq_A 201 FVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN 279 (313)
T ss_dssp EEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSE
T ss_pred EEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCc
Confidence 999999999988899999999999999999999865554 7788999999999999998999999999999999999997
Q ss_pred c
Q 042000 247 F 247 (249)
Q Consensus 247 ~ 247 (249)
+
T Consensus 280 l 280 (313)
T 1ogq_A 280 L 280 (313)
T ss_dssp E
T ss_pred c
Confidence 5
No 15
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.96 E-value=5.1e-28 Score=195.46 Aligned_cols=107 Identities=21% Similarity=0.287 Sum_probs=65.1
Q ss_pred hcccceEEcccCeecccCCcccCCCCCccEEeCCCCCCccCCchhccCCcccCEEEeeCCcccCCcChhhhcCCCccEEE
Q 042000 138 LSLLSGLDLSCNKLISHIPPQIGNLTRIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLAIFS 217 (249)
Q Consensus 138 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~ 217 (249)
+++|++|++++|.+.+..+..+..+++|+.|++++|.+. .++..+..+++|++|++++|.+. .+|..+..+++|+.|+
T Consensus 247 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~ 324 (390)
T 3o6n_A 247 YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLY 324 (390)
T ss_dssp CTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCC-EEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEE
T ss_pred CCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCc-ccCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEE
Confidence 445566666666555555555566666666666666665 24444455666666666666665 4455556666667777
Q ss_pred ccccccccCCChhhhhhcccccccccCCcccC
Q 042000 218 VAYNNLSGEIPEWTAQFATFNESSYEGNTFLC 249 (249)
Q Consensus 218 l~~n~l~~~~~~~~~~~~~l~~l~l~~n~~~c 249 (249)
+++|.+++ ++ +..+++|+.+++++|++.|
T Consensus 325 L~~N~i~~-~~--~~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 325 LDHNSIVT-LK--LSTHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp CCSSCCCC-CC--CCTTCCCSEEECCSSCEEH
T ss_pred CCCCccce-eC--chhhccCCEEEcCCCCccc
Confidence 77666663 23 4556677777777777654
No 16
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.96 E-value=2e-28 Score=202.78 Aligned_cols=239 Identities=22% Similarity=0.186 Sum_probs=186.0
Q ss_pred CeEeeccccCCCCCCCCCCCCcccEEEccCccCCCCCCccccCCCCCCeEEccCccccccccccccccCCCCeEeCCCCc
Q 042000 1 SLVLSNNSLNGHMFPRNFNLTNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPENH 80 (249)
Q Consensus 1 ~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 80 (249)
+|+|++|.+++..+..|.++++|++|++++|.+.+..|.+|+++++|++|++++|.+....+..|..+++|++|++++|.
T Consensus 36 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 115 (477)
T 2id5_A 36 LLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENK 115 (477)
T ss_dssp EEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSC
T ss_pred EEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCc
Confidence 48999999998888899999999999999999998888899999999999999999986655678999999999999998
Q ss_pred CcCc----------cceEEeccccccccCCCCCcCCCCCccEEEccCccccccCCCcchhhhcccchhcccceEEcccCe
Q 042000 81 LEGL----------IPILDISDNNISGRLPSCTFSNCSSLVTLDLSYNRINGSIPEWNIAYIYQGKVLSLLSGLDLSCNK 150 (249)
Q Consensus 81 ~~~~----------~~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 150 (249)
+... +..+++++|.+. .+....+..+++|++|++++|.+.+ ++... ...+++|+.|++++|.
T Consensus 116 i~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~------l~~l~~L~~L~l~~n~ 187 (477)
T 2id5_A 116 IVILLDYMFQDLYNLKSLEVGDNDLV-YISHRAFSGLNSLEQLTLEKCNLTS-IPTEA------LSHLHGLIVLRLRHLN 187 (477)
T ss_dssp CCEECTTTTTTCTTCCEEEECCTTCC-EECTTSSTTCTTCCEEEEESCCCSS-CCHHH------HTTCTTCCEEEEESCC
T ss_pred cccCChhHccccccCCEEECCCCccc-eeChhhccCCCCCCEEECCCCcCcc-cChhH------hcccCCCcEEeCCCCc
Confidence 7644 567999999988 4444488899999999999998863 22211 1235566777777666
Q ss_pred ecccCCcccCCCC------------------------CccEEeCCCCCCccCCchhccCCcccCEEEeeCCcccCCcChh
Q 042000 151 LISHIPPQIGNLT------------------------RIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQ 206 (249)
Q Consensus 151 ~~~~~~~~l~~~~------------------------~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~ 206 (249)
+....+..+..++ +|+.|++++|.+....+..+..+++|+.|++++|.+.+..+..
T Consensus 188 i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 267 (477)
T 2id5_A 188 INAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSM 267 (477)
T ss_dssp CCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTS
T ss_pred CcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhh
Confidence 6554444444444 4555555556665333356777888888888888887666777
Q ss_pred hhcCCCccEEEccccccccCCChhhhhhcccccccccCCcc
Q 042000 207 LVELKTLAIFSVAYNNLSGEIPEWTAQFATFNESSYEGNTF 247 (249)
Q Consensus 207 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~n~~ 247 (249)
+..+++|+.|++++|.+++..|..+..+++|+.+++++|.+
T Consensus 268 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 308 (477)
T 2id5_A 268 LHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQL 308 (477)
T ss_dssp CTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCC
T ss_pred ccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcC
Confidence 78888888888888888877777888888888888888853
No 17
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=1e-27 Score=185.72 Aligned_cols=204 Identities=22% Similarity=0.227 Sum_probs=175.9
Q ss_pred CeEeeccccCCCCCCCCCCCCcccEEEccCccCCCCCCccccCCCCCCeEEccCcc-ccccccccccccCCCCeEeCCCC
Q 042000 1 SLVLSNNSLNGHMFPRNFNLTNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNS-LSGKIPRWLGNLTRLNHIIMPEN 79 (249)
Q Consensus 1 ~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~~ 79 (249)
+|++++|.+++..+..+.++++|++|++++|.+.+..+.+|+.+++|++|++++|. +....+..+..+++|++|++++|
T Consensus 36 ~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n 115 (285)
T 1ozn_A 36 RIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRC 115 (285)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTS
T ss_pred EEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCC
Confidence 47899999997777889999999999999999987778899999999999999997 77566788999999999999999
Q ss_pred cCcCccceEEeccccccccCCCCCcCCCCCccEEEccCccccccCCCcchhhhcccchhcccceEEcccCeecccCCccc
Q 042000 80 HLEGLIPILDISDNNISGRLPSCTFSNCSSLVTLDLSYNRINGSIPEWNIAYIYQGKVLSLLSGLDLSCNKLISHIPPQI 159 (249)
Q Consensus 80 ~~~~~~~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l 159 (249)
.+. .++...+..+++|++|++++|.+....+. ....+++|++|++++|.++...+..+
T Consensus 116 ~l~---------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-------~~~~l~~L~~L~l~~n~l~~~~~~~~ 173 (285)
T 1ozn_A 116 GLQ---------------ELGPGLFRGLAALQYLYLQDNALQALPDD-------TFRDLGNLTHLFLHGNRISSVPERAF 173 (285)
T ss_dssp CCC---------------CCCTTTTTTCTTCCEEECCSSCCCCCCTT-------TTTTCTTCCEEECCSSCCCEECTTTT
T ss_pred cCC---------------EECHhHhhCCcCCCEEECCCCcccccCHh-------HhccCCCccEEECCCCcccccCHHHh
Confidence 887 44444788899999999999988733222 11346789999999999887777778
Q ss_pred CCCCCccEEeCCCCCCccCCchhccCCcccCEEEeeCCcccCCcChhhhcCCCccEEEccccccccC
Q 042000 160 GNLTRIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLAIFSVAYNNLSGE 226 (249)
Q Consensus 160 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 226 (249)
..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+...
T Consensus 174 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 240 (285)
T 1ozn_A 174 RGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD 240 (285)
T ss_dssp TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECS
T ss_pred cCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCC
Confidence 8899999999999999977788999999999999999999977777899999999999999988743
No 18
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=1.2e-27 Score=189.36 Aligned_cols=241 Identities=22% Similarity=0.260 Sum_probs=171.9
Q ss_pred eEeeccccCCCCCCCCCCCCcccEEEccCccCCCCCCccccCCCCCCeEEccCccccccccccccccCCCCeEeCCCCcC
Q 042000 2 LVLSNNSLNGHMFPRNFNLTNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPENHL 81 (249)
Q Consensus 2 l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 81 (249)
++++++.++ .+|..+. +++++|++++|.+....+.+|+++++|++|++++|.+....+.++..+++|++|++++|.+
T Consensus 38 l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 114 (332)
T 2ft3_A 38 VQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHL 114 (332)
T ss_dssp EECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCC
T ss_pred EECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcC
Confidence 566777776 5565553 6788888888887766666778888888888888888766677788888888888888776
Q ss_pred cCc-------cceEEeccccccccCCCCCcCCCCCccEEEccCccccc--cCCCcchhhh--------------cccchh
Q 042000 82 EGL-------IPILDISDNNISGRLPSCTFSNCSSLVTLDLSYNRING--SIPEWNIAYI--------------YQGKVL 138 (249)
Q Consensus 82 ~~~-------~~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~~~--------------~~~~~~ 138 (249)
... +..+++++|.+. .++...+..+++|++|++++|.+.. ..+.. +... ......
T Consensus 115 ~~l~~~~~~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~l~L~~L~l~~n~l~~l~~~~~ 192 (332)
T 2ft3_A 115 VEIPPNLPSSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGA-FDGLKLNYLRISEAKLTGIPKDLP 192 (332)
T ss_dssp CSCCSSCCTTCCEEECCSSCCC-CCCSGGGSSCSSCCEEECCSCCCBGGGSCTTS-SCSCCCSCCBCCSSBCSSCCSSSC
T ss_pred CccCccccccCCEEECCCCccC-ccCHhHhCCCccCCEEECCCCccccCCCCccc-ccCCccCEEECcCCCCCccCcccc
Confidence 543 556777777776 5555467778888888888887642 11111 0000 000112
Q ss_pred cccceEEcccCeecccCCcccCCCCCccEEeCCCCCCccCCchhccCCcccCEEEeeCCcccCCcChhhhcCCCccEEEc
Q 042000 139 SLLSGLDLSCNKLISHIPPQIGNLTRIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLAIFSV 218 (249)
Q Consensus 139 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~l 218 (249)
++|++|++++|.+....+..+..+++|+.|++++|.+.+..+.++..+++|+.|++++|.+. .+|..+..+++|+.|++
T Consensus 193 ~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l 271 (332)
T 2ft3_A 193 ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYL 271 (332)
T ss_dssp SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEEC
T ss_pred CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEEC
Confidence 46778888888877766677788888888888888888666667788888888888888887 67777888888888888
Q ss_pred cccccccCCChhhhh------hcccccccccCCccc
Q 042000 219 AYNNLSGEIPEWTAQ------FATFNESSYEGNTFL 248 (249)
Q Consensus 219 ~~n~l~~~~~~~~~~------~~~l~~l~l~~n~~~ 248 (249)
++|.+++..+..+.. .+.++.+++.+||+.
T Consensus 272 ~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 272 HTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp CSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred CCCCCCccChhHccccccccccccccceEeecCccc
Confidence 888888555554443 356778888888753
No 19
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.96 E-value=1e-27 Score=203.48 Aligned_cols=239 Identities=21% Similarity=0.206 Sum_probs=128.9
Q ss_pred eEeeccccCCCCCCCCCCCCcccEEEccCccCCCCCCccccCCCCCCeEEccCccccccccccccccCCCCeEeCCCCcC
Q 042000 2 LVLSNNSLNGHMFPRNFNLTNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPENHL 81 (249)
Q Consensus 2 l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 81 (249)
|+|++|.+++..+..|.++++|++|++++|.+.+..+..|+++++|++|++++|.+....+..|..+++|++|++++|.+
T Consensus 80 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l 159 (597)
T 3oja_B 80 LNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNL 159 (597)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcC
Confidence 55666666655555666666666666666666555555556666666666666666533333445666666666666555
Q ss_pred cCc----------cceEEeccccccccCCCCCcCCCCCccEEEccCccccc-------------------cCCCc-----
Q 042000 82 EGL----------IPILDISDNNISGRLPSCTFSNCSSLVTLDLSYNRING-------------------SIPEW----- 127 (249)
Q Consensus 82 ~~~----------~~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-------------------~~~~~----- 127 (249)
... +..+++++|.+.+ ++ +..+++|+.|++++|.+.+ ..+..
T Consensus 160 ~~~~~~~~~~l~~L~~L~L~~N~l~~-~~---~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~ 235 (597)
T 3oja_B 160 ERIEDDTFQATTSLQNLQLSSNRLTH-VD---LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELT 235 (597)
T ss_dssp CBCCTTTTTTCTTCCEEECTTSCCSB-CC---GGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCC
T ss_pred CCCChhhhhcCCcCcEEECcCCCCCC-cC---hhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCC
Confidence 432 2334555554431 11 1112222222222222111 00000
Q ss_pred -------chhhhcccchhcccceEEcccCeecccCCcccCCCCCccEEeCCCCCCccCCchhccCCcccCEEEeeCCccc
Q 042000 128 -------NIAYIYQGKVLSLLSGLDLSCNKLISHIPPQIGNLTRIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLN 200 (249)
Q Consensus 128 -------~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~ 200 (249)
.+........+++|+.|++++|.+....+..+..+++|+.|++++|.+.+ +|..+..+++|+.|++++|.+.
T Consensus 236 ~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~ 314 (597)
T 3oja_B 236 ILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL 314 (597)
T ss_dssp EEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC
T ss_pred EEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC
Confidence 00000111234556666666666655555666666666666666666663 4555555667777777777666
Q ss_pred CCcChhhhcCCCccEEEccccccccCCChhhhhhcccccccccCCcccC
Q 042000 201 GKIPHQLVELKTLAIFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLC 249 (249)
Q Consensus 201 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~n~~~c 249 (249)
.+|..+..+++|+.|++++|.+++. + +..+++|+.+++++|++.|
T Consensus 315 -~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~ 359 (597)
T 3oja_B 315 -HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDC 359 (597)
T ss_dssp -CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEH
T ss_pred -ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCC
Confidence 4555566677777777777776633 3 4456777777788887765
No 20
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.95 E-value=1.5e-27 Score=203.08 Aligned_cols=221 Identities=20% Similarity=0.181 Sum_probs=169.0
Q ss_pred CCCcccEEEccCccCCCCCCccccCCCCCCeEEccCcccccc--ccccccccCCCCeEeCCCCcCcCc---------cce
Q 042000 19 NLTNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGK--IPRWLGNLTRLNHIIMPENHLEGL---------IPI 87 (249)
Q Consensus 19 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~---------~~~ 87 (249)
.+++|++|++++|...... .+..+++|++|++++|.+.+. .+..+..+++|++|++++|.+... ++.
T Consensus 326 ~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~ 403 (606)
T 3vq2_A 326 DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQH 403 (606)
T ss_dssp CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCE
T ss_pred CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCe
Confidence 4444444444444322111 344566777777777766533 256677777788888877765432 456
Q ss_pred EEeccccccccCCCCCcCCCCCccEEEccCccccccCCCcchhhhcccchhcccceEEcccCeecc-cCCcccCCCCCcc
Q 042000 88 LDISDNNISGRLPSCTFSNCSSLVTLDLSYNRINGSIPEWNIAYIYQGKVLSLLSGLDLSCNKLIS-HIPPQIGNLTRIE 166 (249)
Q Consensus 88 l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~ 166 (249)
+++++|.+.+..+...+..+++|++|++++|.+.+..|.. ...+++|++|++++|.+.+ ..+..+..+++|+
T Consensus 404 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-------~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 476 (606)
T 3vq2_A 404 LDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGI-------FLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLT 476 (606)
T ss_dssp EECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTT-------TTTCTTCCEEECTTCEEGGGEECSCCTTCTTCC
T ss_pred eECCCCccCCccChhhhhccccCCEEECcCCCCCccchhh-------hcCCCCCCEEECCCCcCCCcchHHhhccCCCCC
Confidence 7778887774444346778888888888888877554442 2346789999999999876 3678889999999
Q ss_pred EEeCCCCCCccCCchhccCCcccCEEEeeCCcccCCcChhhhcCCCccEEEccccccccCCChhhhhhc-ccccccccCC
Q 042000 167 TLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLAIFSVAYNNLSGEIPEWTAQFA-TFNESSYEGN 245 (249)
Q Consensus 167 ~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~-~l~~l~l~~n 245 (249)
.|++++|.+.+..|..+..+++|++|++++|++.+..|..+..+++|+.|++++|.++ .+|..+..++ +|+.+++++|
T Consensus 477 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N 555 (606)
T 3vq2_A 477 FLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNN 555 (606)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSC
T ss_pred EEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCC
Confidence 9999999999878888999999999999999999888999999999999999999999 6777788887 5999999999
Q ss_pred cccC
Q 042000 246 TFLC 249 (249)
Q Consensus 246 ~~~c 249 (249)
|+.|
T Consensus 556 ~~~c 559 (606)
T 3vq2_A 556 SVAC 559 (606)
T ss_dssp CCCC
T ss_pred Cccc
Confidence 9988
No 21
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.95 E-value=5.1e-27 Score=199.73 Aligned_cols=236 Identities=25% Similarity=0.245 Sum_probs=168.8
Q ss_pred eEeeccccCCCCCCCCCCCCcccEEEccCccCCCCCCccccCCCCCCeEEccCccccccccccccccCCCCeEeCCCCcC
Q 042000 2 LVLSNNSLNGHMFPRNFNLTNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPENHL 81 (249)
Q Consensus 2 l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 81 (249)
+++++|.+++..+..|.++++|++|++++|.+. .+|..++++++|++|++++|.+....+..+..+++|++|++++|.+
T Consensus 259 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 337 (606)
T 3t6q_A 259 INLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTK 337 (606)
T ss_dssp EECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSS
T ss_pred EEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCc
Confidence 688999999877888999999999999999998 6777899999999999999999877788999999999999999976
Q ss_pred cC-----------ccceEEeccccccccC--CCCCcCCCCCccEEEccCccccccCCCcchhhhcccchhcccceEEccc
Q 042000 82 EG-----------LIPILDISDNNISGRL--PSCTFSNCSSLVTLDLSYNRINGSIPEWNIAYIYQGKVLSLLSGLDLSC 148 (249)
Q Consensus 82 ~~-----------~~~~l~l~~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 148 (249)
.. .++.+++++|.+.+.. +. .+..+++|++|++++|.+.+..+.. ...+++|++|++++
T Consensus 338 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~-------~~~l~~L~~L~l~~ 409 (606)
T 3t6q_A 338 RLELGTGCLENLENLRELDLSHDDIETSDCCNL-QLRNLSHLQSLNLSYNEPLSLKTEA-------FKECPQLELLDLAF 409 (606)
T ss_dssp CCBCCSSTTTTCTTCCEEECCSSCCCEEEESTT-TTTTCTTCCEEECCSCSCEEECTTT-------TTTCTTCSEEECTT
T ss_pred ccccchhhhhccCcCCEEECCCCccccccCcch-hcccCCCCCEEECCCCcCCcCCHHH-------hcCCccCCeEECCC
Confidence 52 2567899999887432 33 7888999999999999887544432 12245666666666
Q ss_pred CeecccCCc-ccCCCCCccEEeCCCCCCccCCchhccCCcccCEEEeeCCcccCC---cChhhhcCCCccEEEccccccc
Q 042000 149 NKLISHIPP-QIGNLTRIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGK---IPHQLVELKTLAIFSVAYNNLS 224 (249)
Q Consensus 149 ~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~---~~~~~~~~~~L~~L~l~~n~l~ 224 (249)
|.+....+. .+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+. .+..+..+++|+.|++++|.++
T Consensus 410 n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~ 489 (606)
T 3t6q_A 410 TRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLS 489 (606)
T ss_dssp CCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCC
T ss_pred CcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccC
Confidence 666543332 355566666666666666655555566666666666666665541 2244555566666666666665
Q ss_pred cCCChhhhhhcccccccccCCc
Q 042000 225 GEIPEWTAQFATFNESSYEGNT 246 (249)
Q Consensus 225 ~~~~~~~~~~~~l~~l~l~~n~ 246 (249)
+..|..+..+++|+.+++++|.
T Consensus 490 ~~~~~~~~~l~~L~~L~Ls~N~ 511 (606)
T 3t6q_A 490 SIDQHAFTSLKMMNHVDLSHNR 511 (606)
T ss_dssp EECTTTTTTCTTCCEEECCSSC
T ss_pred ccChhhhccccCCCEEECCCCc
Confidence 5555555556666666666554
No 22
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.95 E-value=4.9e-27 Score=185.62 Aligned_cols=231 Identities=19% Similarity=0.263 Sum_probs=195.2
Q ss_pred eEeeccccCCCCCCCCCCCCcccEEEccCccCCCCCCccccCCCCCCeEEccCccccccccccccccCCCCeEeCCCCcC
Q 042000 2 LVLSNNSLNGHMFPRNFNLTNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPENHL 81 (249)
Q Consensus 2 l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 81 (249)
++++++.++ .+|..+. +.+++|++++|.+.+..+..|+++++|++|++++|.+.+..|..+..+++|++|++++|.+
T Consensus 36 l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 112 (330)
T 1xku_A 36 VQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 112 (330)
T ss_dssp EECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCC
T ss_pred EEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcC
Confidence 567777777 5666654 7899999999999977777899999999999999999977788999999999999999987
Q ss_pred cCc-------cceEEeccccccccCCCCCcCCCCCccEEEccCccccc--cCCCcchhhhcccchhcccceEEcccCeec
Q 042000 82 EGL-------IPILDISDNNISGRLPSCTFSNCSSLVTLDLSYNRING--SIPEWNIAYIYQGKVLSLLSGLDLSCNKLI 152 (249)
Q Consensus 82 ~~~-------~~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 152 (249)
... ++.+++++|.+. .++...+..+++|++|++++|.+.. ..+. ....+++|++|++++|.++
T Consensus 113 ~~l~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-------~~~~l~~L~~L~l~~n~l~ 184 (330)
T 1xku_A 113 KELPEKMPKTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENG-------AFQGMKKLSYIRIADTNIT 184 (330)
T ss_dssp SBCCSSCCTTCCEEECCSSCCC-BBCHHHHTTCTTCCEEECCSSCCCGGGBCTT-------GGGGCTTCCEEECCSSCCC
T ss_pred CccChhhcccccEEECCCCccc-ccCHhHhcCCccccEEECCCCcCCccCcChh-------hccCCCCcCEEECCCCccc
Confidence 643 667899999887 4554468889999999999998752 1111 2234788999999999986
Q ss_pred ccCCcccCCCCCccEEeCCCCCCccCCchhccCCcccCEEEeeCCcccCCcChhhhcCCCccEEEccccccccCCChhhh
Q 042000 153 SHIPPQIGNLTRIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLAIFSVAYNNLSGEIPEWTA 232 (249)
Q Consensus 153 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 232 (249)
. .+..+. ++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.++ .+|..+.
T Consensus 185 ~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~ 260 (330)
T 1xku_A 185 T-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLA 260 (330)
T ss_dssp S-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTT
T ss_pred c-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhc
Confidence 5 444333 79999999999999777889999999999999999999777778999999999999999999 7888899
Q ss_pred hhcccccccccCCcc
Q 042000 233 QFATFNESSYEGNTF 247 (249)
Q Consensus 233 ~~~~l~~l~l~~n~~ 247 (249)
.+++|+.+++++|++
T Consensus 261 ~l~~L~~L~l~~N~i 275 (330)
T 1xku_A 261 DHKYIQVVYLHNNNI 275 (330)
T ss_dssp TCSSCCEEECCSSCC
T ss_pred cCCCcCEEECCCCcC
Confidence 999999999999975
No 23
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.95 E-value=4.4e-27 Score=200.83 Aligned_cols=112 Identities=21% Similarity=0.336 Sum_probs=101.0
Q ss_pred hcccceEEcccCeecc-cCCcccCCCCCccEEeCCCCCCccCCchhccCCcccCEEEeeCCcccCCcChhhhcCCCccEE
Q 042000 138 LSLLSGLDLSCNKLIS-HIPPQIGNLTRIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLAIF 216 (249)
Q Consensus 138 ~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L 216 (249)
+..++.|++++|.... ..+..+..+++|+.|++++|++.+..|..+..+++|++|++++|++.+..+..+..+++|++|
T Consensus 468 ~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L 547 (635)
T 4g8a_A 468 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVL 547 (635)
T ss_dssp CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEE
T ss_pred chhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEE
Confidence 5678889999887543 466778889999999999999998788999999999999999999998888899999999999
Q ss_pred EccccccccCCChhhhhh-cccccccccCCcccC
Q 042000 217 SVAYNNLSGEIPEWTAQF-ATFNESSYEGNTFLC 249 (249)
Q Consensus 217 ~l~~n~l~~~~~~~~~~~-~~l~~l~l~~n~~~c 249 (249)
++++|.+++..|..+..+ ++|+.+++++|||.|
T Consensus 548 ~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C 581 (635)
T 4g8a_A 548 DYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 581 (635)
T ss_dssp ECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCC
T ss_pred ECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcc
Confidence 999999998888888888 689999999999998
No 24
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.95 E-value=5.3e-27 Score=185.60 Aligned_cols=211 Identities=22% Similarity=0.265 Sum_probs=166.8
Q ss_pred cccEEEccCccCCCCCCccccCCCCCCeEEccCccccccccccccccCCCCeEeCCCCcCcCc----------cceEEec
Q 042000 22 NLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPENHLEGL----------IPILDIS 91 (249)
Q Consensus 22 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~----------~~~l~l~ 91 (249)
+++.++++++.+. .+|..+ .++|++|++++|.+....+..|..+++|++|++++|.+... +..++++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCcc-ccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 7999999999987 555544 36899999999999877677899999999999999987654 5568999
Q ss_pred cccccccCCCCCcCCCCCccEEEccCccccccCCCcchhhhcccchhcccceEEcccCeecc--cCCcccCCC-------
Q 042000 92 DNNISGRLPSCTFSNCSSLVTLDLSYNRINGSIPEWNIAYIYQGKVLSLLSGLDLSCNKLIS--HIPPQIGNL------- 162 (249)
Q Consensus 92 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~l~~~------- 162 (249)
+|.+. .++.... ++|++|++++|.+.. ++... ...+++|++|++++|.++. ..+..+..+
T Consensus 111 ~n~l~-~l~~~~~---~~L~~L~l~~n~i~~-~~~~~------~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l 179 (332)
T 2ft3_A 111 KNHLV-EIPPNLP---SSLVELRIHDNRIRK-VPKGV------FSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRI 179 (332)
T ss_dssp SSCCC-SCCSSCC---TTCCEEECCSSCCCC-CCSGG------GSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBC
T ss_pred CCcCC-ccCcccc---ccCCEEECCCCccCc-cCHhH------hCCCccCCEEECCCCccccCCCCcccccCCccCEEEC
Confidence 99887 6766333 789999999999873 33321 1235667777777766532 222222221
Q ss_pred -------------CCccEEeCCCCCCccCCchhccCCcccCEEEeeCCcccCCcChhhhcCCCccEEEccccccccCCCh
Q 042000 163 -------------TRIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLAIFSVAYNNLSGEIPE 229 (249)
Q Consensus 163 -------------~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 229 (249)
++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.++ .+|.
T Consensus 180 ~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~ 258 (332)
T 2ft3_A 180 SEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPA 258 (332)
T ss_dssp CSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCT
T ss_pred cCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecCh
Confidence 57788888888888666678888999999999999999877888999999999999999998 7888
Q ss_pred hhhhhcccccccccCCcc
Q 042000 230 WTAQFATFNESSYEGNTF 247 (249)
Q Consensus 230 ~~~~~~~l~~l~l~~n~~ 247 (249)
.+..+++|+.+++++|.+
T Consensus 259 ~l~~l~~L~~L~l~~N~l 276 (332)
T 2ft3_A 259 GLPDLKLLQVVYLHTNNI 276 (332)
T ss_dssp TGGGCTTCCEEECCSSCC
T ss_pred hhhcCccCCEEECCCCCC
Confidence 899999999999999975
No 25
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.95 E-value=1e-26 Score=178.77 Aligned_cols=182 Identities=25% Similarity=0.297 Sum_probs=84.0
Q ss_pred CCCeEEccCccccccccccccccCCCCeEeCCCCcCcCccceEEeccccccccCCCCCcCCCCCccEEEccCccccccCC
Q 042000 46 SLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPENHLEGLIPILDISDNNISGRLPSCTFSNCSSLVTLDLSYNRINGSIP 125 (249)
Q Consensus 46 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 125 (249)
++++|++++|.+....+.+|..+++|++|++++|.+. .++...+..+++|++|++++|.+.. ++
T Consensus 38 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~---------------~i~~~~~~~l~~L~~L~l~~n~l~~-~~ 101 (270)
T 2o6q_A 38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ---------------TLPAGIFKELKNLETLWVTDNKLQA-LP 101 (270)
T ss_dssp TCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS---------------CCCTTTTSSCTTCCEEECCSSCCCC-CC
T ss_pred CCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC---------------eeChhhhcCCCCCCEEECCCCcCCc-CC
Confidence 4445555544444333334444445555444444444 3333233444445555555444431 11
Q ss_pred CcchhhhcccchhcccceEEcccCeecccCCcccCCCCCccEEeCCCCCCccCCchhccCCcccCEEEeeCCcccCCcCh
Q 042000 126 EWNIAYIYQGKVLSLLSGLDLSCNKLISHIPPQIGNLTRIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPH 205 (249)
Q Consensus 126 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~ 205 (249)
... ...+++|++|++++|.++...+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+.
T Consensus 102 ~~~------~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 175 (270)
T 2o6q_A 102 IGV------FDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEG 175 (270)
T ss_dssp TTT------TTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred HhH------cccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChh
Confidence 100 01234445555555544444444444455555555555555533333344555555555555555544444
Q ss_pred hhhcCCCccEEEccccccccCCChhhhhhcccccccccCCcccC
Q 042000 206 QLVELKTLAIFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLC 249 (249)
Q Consensus 206 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~n~~~c 249 (249)
.+..+++|++|++++|.+++..+..+..+++|+.+++++||+.|
T Consensus 176 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 176 AFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred HhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence 44455555555555555553333334445555555555555544
No 26
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.95 E-value=6.7e-27 Score=180.38 Aligned_cols=218 Identities=21% Similarity=0.181 Sum_probs=168.3
Q ss_pred ccccCCCCCCCCCCCCcccEEEccCccCCCCCCccccCCCCCCeEEccCccccccccccccccCCCCeEeCCCCcCcCcc
Q 042000 6 NNSLNGHMFPRNFNLTNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPENHLEGLI 85 (249)
Q Consensus 6 ~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 85 (249)
+..++ .+|..+. +++++|++++|.+.+..+..|+++++|++|++++|.+....+..|..+++|++|++++|.+.
T Consensus 16 ~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~--- 89 (276)
T 2z62_A 16 ELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ--- 89 (276)
T ss_dssp TSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC---
T ss_pred CCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccC---
Confidence 33444 4555554 57999999999998777778889999999999999888666668889999999999998877
Q ss_pred ceEEeccccccccCCCCCcCCCCCccEEEccCccccccCCCcchhhhcccchhcccceEEcccCeeccc-CCcccCCCCC
Q 042000 86 PILDISDNNISGRLPSCTFSNCSSLVTLDLSYNRINGSIPEWNIAYIYQGKVLSLLSGLDLSCNKLISH-IPPQIGNLTR 164 (249)
Q Consensus 86 ~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~ 164 (249)
.++...+..+++|++|++++|.+.+..+.. ...+++|++|++++|.+... .+..+..+++
T Consensus 90 ------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-------~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~ 150 (276)
T 2z62_A 90 ------------SLALGAFSGLSSLQKLVAVETNLASLENFP-------IGHLKTLKELNVAHNLIQSFKLPEYFSNLTN 150 (276)
T ss_dssp ------------EECTTTTTTCTTCCEEECTTSCCCCSTTCC-------CTTCTTCCEEECCSSCCCCCCCCGGGGGCTT
T ss_pred ------------ccChhhhcCCccccEEECCCCCccccCchh-------cccCCCCCEEECcCCccceecCchhhccCCC
Confidence 444346788889999999988876432211 23467899999999988663 4778888899
Q ss_pred ccEEeCCCCCCccCCchhccCCcccC----EEEeeCCcccCCcChhhhcCCCccEEEccccccccCCChhhhhhcccccc
Q 042000 165 IETLNLSHNNLTGSIPSTFSNLKHVE----SLDLSNNKLNGKIPHQLVELKTLAIFSVAYNNLSGEIPEWTAQFATFNES 240 (249)
Q Consensus 165 L~~L~l~~~~~~~~~~~~~~~~~~L~----~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l 240 (249)
|++|++++|.+.+..+..+..+.+++ .+++++|.+.+..+..+ ...+|+.|++++|.+++..+..+..+++|+.+
T Consensus 151 L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 229 (276)
T 2z62_A 151 LEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKI 229 (276)
T ss_dssp CCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEE
T ss_pred CCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEE
Confidence 99999999998866666666666666 88999998885444433 44589999999999886555667888999999
Q ss_pred cccCCcccC
Q 042000 241 SYEGNTFLC 249 (249)
Q Consensus 241 ~l~~n~~~c 249 (249)
++++||+.|
T Consensus 230 ~l~~N~~~c 238 (276)
T 2z62_A 230 WLHTNPWDC 238 (276)
T ss_dssp ECCSSCBCC
T ss_pred EccCCcccc
Confidence 999999877
No 27
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.95 E-value=1.2e-26 Score=199.89 Aligned_cols=221 Identities=23% Similarity=0.226 Sum_probs=167.8
Q ss_pred CcccEEEccCccCCCCCCccccCCCCCCeEEccCcccccccc-ccccccCCCCeEeCCCCcCcC----------ccceEE
Q 042000 21 TNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGKIP-RWLGNLTRLNHIIMPENHLEG----------LIPILD 89 (249)
Q Consensus 21 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~----------~~~~l~ 89 (249)
+.|+.|++++|++.+..+.+|+.+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.. .++.++
T Consensus 381 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~ 460 (680)
T 1ziw_A 381 SPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLM 460 (680)
T ss_dssp SCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEE
T ss_pred CcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccch
Confidence 467777777777666666666677777777777776654443 466667777777777666432 244566
Q ss_pred ecccccc--ccCCCCCcCCCCCccEEEccCccccccCCCcchhhhcccchhcccceEEcccCeecccCC--------ccc
Q 042000 90 ISDNNIS--GRLPSCTFSNCSSLVTLDLSYNRINGSIPEWNIAYIYQGKVLSLLSGLDLSCNKLISHIP--------PQI 159 (249)
Q Consensus 90 l~~~~~~--~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--------~~l 159 (249)
+.++.+. +..+. .+..+++|++|++++|.+.+..+. . ...+++|++|++++|.++.... ..+
T Consensus 461 l~~n~l~~~~~~p~-~~~~l~~L~~L~Ls~N~l~~i~~~-~------~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~ 532 (680)
T 1ziw_A 461 LRRVALKNVDSSPS-PFQPLRNLTILDLSNNNIANINDD-M------LEGLEKLEILDLQHNNLARLWKHANPGGPIYFL 532 (680)
T ss_dssp CTTSCCBCTTCSSC-TTTTCTTCCEEECCSSCCCCCCTT-T------TTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTT
T ss_pred hccccccccccCCc-ccccCCCCCEEECCCCCCCcCChh-h------hccccccCEEeCCCCCccccchhhccCCcchhh
Confidence 6666554 23444 788899999999999998743332 1 2346789999999999865422 236
Q ss_pred CCCCCccEEeCCCCCCccCCchhccCCcccCEEEeeCCcccCCcChhhhcCCCccEEEccccccccCCChhhh-hhcccc
Q 042000 160 GNLTRIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLAIFSVAYNNLSGEIPEWTA-QFATFN 238 (249)
Q Consensus 160 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~~~~l~ 238 (249)
..+++|+.|++++|.+....+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+++..+..+. .+++|+
T Consensus 533 ~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~ 612 (680)
T 1ziw_A 533 KGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLT 612 (680)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCS
T ss_pred cCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccC
Confidence 7889999999999999954455789999999999999999977777788999999999999999977677777 799999
Q ss_pred cccccCCcccC
Q 042000 239 ESSYEGNTFLC 249 (249)
Q Consensus 239 ~l~l~~n~~~c 249 (249)
.+++++|||.|
T Consensus 613 ~l~l~~N~~~c 623 (680)
T 1ziw_A 613 ELDMRFNPFDC 623 (680)
T ss_dssp EEECTTCCCCB
T ss_pred EEEccCCCccc
Confidence 99999999998
No 28
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.95 E-value=9.1e-27 Score=204.80 Aligned_cols=247 Identities=20% Similarity=0.162 Sum_probs=177.0
Q ss_pred CeEeeccccCCCCCCCCCCCCcccEEEccCccCCCC-CCccccCCCCCCeEEccCccccccccccccccCCCCeEeCCCC
Q 042000 1 SLVLSNNSLNGHMFPRNFNLTNLRWLQLDGNHFVGE-NPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPEN 79 (249)
Q Consensus 1 ~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 79 (249)
+|+|++|.+++..+..|.++++|++|++++|..... .+.+|+++++|++|++++|.+.+..|..|.++++|++|++++|
T Consensus 28 ~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n 107 (844)
T 3j0a_A 28 RLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFC 107 (844)
T ss_dssp EEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTC
T ss_pred EEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCC
Confidence 479999999988889999999999999999955444 3778999999999999999998777889999999999999998
Q ss_pred cCcCc------------cceEEeccccccccCCCCCcCCCCCccEEEccCccccccCCCcchhhh---------------
Q 042000 80 HLEGL------------IPILDISDNNISGRLPSCTFSNCSSLVTLDLSYNRINGSIPEWNIAYI--------------- 132 (249)
Q Consensus 80 ~~~~~------------~~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~--------------- 132 (249)
.+... ++.+++++|.+.+..+...+..+++|++|++++|.+.+..+.......
T Consensus 108 ~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~ 187 (844)
T 3j0a_A 108 GLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLY 187 (844)
T ss_dssp CCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSC
T ss_pred CCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccc
Confidence 87641 556888888887444434678888888888888876543322110000
Q ss_pred ----c--------------------------------------------------------------------ccchhcc
Q 042000 133 ----Y--------------------------------------------------------------------QGKVLSL 140 (249)
Q Consensus 133 ----~--------------------------------------------------------------------~~~~~~~ 140 (249)
. ......+
T Consensus 188 ~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~ 267 (844)
T 3j0a_A 188 SRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSS 267 (844)
T ss_dssp CCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSC
T ss_pred cccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCC
Confidence 0 0000134
Q ss_pred cceEEcccCeecccCCcccCCCCCccEEeCCCCCCccCCchhccCCcccCEEEeeCCcccCCcChhhhcCCCccEEEccc
Q 042000 141 LSGLDLSCNKLISHIPPQIGNLTRIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLAIFSVAY 220 (249)
Q Consensus 141 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~ 220 (249)
|+.|++++|.+....+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++
T Consensus 268 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 347 (844)
T 3j0a_A 268 VRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQK 347 (844)
T ss_dssp CCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCS
T ss_pred ccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCC
Confidence 55566666655555555666667777777777777665666677777777777777777766667777777777777777
Q ss_pred cccccCCChhhhhhcccccccccCCcc
Q 042000 221 NNLSGEIPEWTAQFATFNESSYEGNTF 247 (249)
Q Consensus 221 n~l~~~~~~~~~~~~~l~~l~l~~n~~ 247 (249)
|.+++..+..+..+++|+.+++++|..
T Consensus 348 N~i~~~~~~~~~~l~~L~~L~Ls~N~l 374 (844)
T 3j0a_A 348 NHIAIIQDQTFKFLEKLQTLDLRDNAL 374 (844)
T ss_dssp CCCCCCCSSCSCSCCCCCEEEEETCCS
T ss_pred CCCCccChhhhcCCCCCCEEECCCCCC
Confidence 777655555666777777777777653
No 29
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=4.7e-27 Score=185.37 Aligned_cols=209 Identities=17% Similarity=0.217 Sum_probs=182.5
Q ss_pred CCcccEEEccCccCCCCCCccccCCCCCCeEEccCccccccccccccccCCCCeEeCCCCcCcCccceEEeccccccccC
Q 042000 20 LTNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPENHLEGLIPILDISDNNISGRL 99 (249)
Q Consensus 20 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~l~~~~~~~~~ 99 (249)
.+++++|+++++.+. .+|..+.++++|++|++++|.+. .+|..+..+++|++|++++|.+. .+
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~---------------~l 142 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR---------------AL 142 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC---------------CC
T ss_pred ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc---------------cC
Confidence 378999999999998 67778889999999999999998 88899999999999999999887 56
Q ss_pred CCCCcCCCCCccEEEccCccccccCCCcchhh--hcccchhcccceEEcccCeecccCCcccCCCCCccEEeCCCCCCcc
Q 042000 100 PSCTFSNCSSLVTLDLSYNRINGSIPEWNIAY--IYQGKVLSLLSGLDLSCNKLISHIPPQIGNLTRIETLNLSHNNLTG 177 (249)
Q Consensus 100 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 177 (249)
+. .+..+++|++|++++|...+.+|...... ......+++|++|++++|.++ ..+..+..+++|++|++++|.+.
T Consensus 143 p~-~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~- 219 (328)
T 4fcg_A 143 PA-SIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS- 219 (328)
T ss_dssp CG-GGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-
T ss_pred cH-HHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-
Confidence 65 68889999999999998887777643210 011234788999999999987 57788999999999999999999
Q ss_pred CCchhccCCcccCEEEeeCCcccCCcChhhhcCCCccEEEccccccccCCChhhhhhcccccccccCCccc
Q 042000 178 SIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLAIFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFL 248 (249)
Q Consensus 178 ~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~n~~~ 248 (249)
.+|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+.+|..+..+++|+.+++++|++.
T Consensus 220 ~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~ 290 (328)
T 4fcg_A 220 ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNL 290 (328)
T ss_dssp CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTC
T ss_pred cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCch
Confidence 47777899999999999999999899999999999999999999999899999999999999999998753
No 30
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.95 E-value=7e-27 Score=188.83 Aligned_cols=240 Identities=22% Similarity=0.299 Sum_probs=178.4
Q ss_pred eEeeccccCCCCCCCCCCCCcccEEEccCccCCCCCCccccCCCCCCeEEccCccccccccccccccCCCCeEeCCCCcC
Q 042000 2 LVLSNNSLNGHMFPRNFNLTNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPENHL 81 (249)
Q Consensus 2 l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 81 (249)
++++++.++...+..+.++++|++|++++|.+....+.+|+.+++|++|++++|.+....+..+..+++|++|++++|.+
T Consensus 50 l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 129 (390)
T 3o6n_A 50 VTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL 129 (390)
T ss_dssp EEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCcc
Confidence 67777877743333356788888888888888766666788888888888888888766667788888888888888876
Q ss_pred cCc----------cceEEeccccccccCCCCCcCCCCCccEEEccCccccccCCCcchhhh----------c--------
Q 042000 82 EGL----------IPILDISDNNISGRLPSCTFSNCSSLVTLDLSYNRINGSIPEWNIAYI----------Y-------- 133 (249)
Q Consensus 82 ~~~----------~~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~----------~-------- 133 (249)
... +..+++++|.+. .++...+..+++|++|++++|.+.+. +...+..+ .
T Consensus 130 ~~l~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~L 207 (390)
T 3o6n_A 130 SSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHV-DLSLIPSLFHANVSYNLLSTLAIPIAV 207 (390)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTSSCTTCCEEECCSSCCSBC-CGGGCTTCSEEECCSSCCSEEECCSSC
T ss_pred CcCCHHHhcCCCCCcEEECCCCccC-ccChhhccCCCCCCEEECCCCcCCcc-ccccccccceeecccccccccCCCCcc
Confidence 543 445788888877 45444788999999999999988742 11100000 0
Q ss_pred -------------ccchhcccceEEcccCeecccCCcccCCCCCccEEeCCCCCCccCCchhccCCcccCEEEeeCCccc
Q 042000 134 -------------QGKVLSLLSGLDLSCNKLISHIPPQIGNLTRIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLN 200 (249)
Q Consensus 134 -------------~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~ 200 (249)
....+.+|++|++++|.+++. ..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.
T Consensus 208 ~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 285 (390)
T 3o6n_A 208 EELDASHNSINVVRGPVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV 285 (390)
T ss_dssp SEEECCSSCCCEEECCCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCC
T ss_pred eEEECCCCeeeeccccccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCc
Confidence 001123456666666665442 45677889999999999998777888889999999999999987
Q ss_pred CCcChhhhcCCCccEEEccccccccCCChhhhhhcccccccccCCcc
Q 042000 201 GKIPHQLVELKTLAIFSVAYNNLSGEIPEWTAQFATFNESSYEGNTF 247 (249)
Q Consensus 201 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~n~~ 247 (249)
+ ++.....+++|+.|++++|.++ .+|..+..+++|+.+++++|++
T Consensus 286 ~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i 330 (390)
T 3o6n_A 286 A-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSI 330 (390)
T ss_dssp E-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCC
T ss_pred c-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcc
Confidence 4 5556677899999999999988 5777788999999999999875
No 31
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.95 E-value=1.4e-26 Score=197.73 Aligned_cols=238 Identities=19% Similarity=0.276 Sum_probs=141.3
Q ss_pred eEeeccccCCCCCC--CCCCCCcccEEEccCccCCCCCCccccCCCCCCeEEccCccccccccccccccCC-CCeEeCCC
Q 042000 2 LVLSNNSLNGHMFP--RNFNLTNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTR-LNHIIMPE 78 (249)
Q Consensus 2 l~l~~~~l~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~-L~~L~l~~ 78 (249)
|++++|.++ .+|. .+.++++|++|++++|.+.+.+| .++.+++|++|++++|.+. .+|..+..+++ |++|++++
T Consensus 310 L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~ 386 (636)
T 4eco_A 310 IYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAH 386 (636)
T ss_dssp EECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCS
T ss_pred EECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccC
Confidence 567777776 6666 67777777777777777765566 6666777777777777766 66666777777 77777777
Q ss_pred CcCcCc-----------cceEEeccccccccCCCCCcC-------CCCCccEEEccCccccccCCCcch-----------
Q 042000 79 NHLEGL-----------IPILDISDNNISGRLPSCTFS-------NCSSLVTLDLSYNRINGSIPEWNI----------- 129 (249)
Q Consensus 79 ~~~~~~-----------~~~l~l~~~~~~~~~~~~~~~-------~l~~L~~L~l~~~~~~~~~~~~~~----------- 129 (249)
|.+... +..+++++|.+.+..+. .+. .+++|++|++++|.+. .+|...+
T Consensus 387 N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~-~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~L 464 (636)
T 4eco_A 387 NKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGK-NFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINL 464 (636)
T ss_dssp SCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTC-SSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEEC
T ss_pred CcCcccchhhhhcccCccCEEECcCCcCCCcchh-hhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEEC
Confidence 765432 33456666666543333 333 4445566666655554 3332111
Q ss_pred -------------hhhc-ccchhcccceEEcccCeecccCCcccC--CCCCccEEeCCCCCCccCCchhccCCcccCEEE
Q 042000 130 -------------AYIY-QGKVLSLLSGLDLSCNKLISHIPPQIG--NLTRIETLNLSHNNLTGSIPSTFSNLKHVESLD 193 (249)
Q Consensus 130 -------------~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~l~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~ 193 (249)
.... ....+++|++|++++|.++ ..+..+. .+++|+.|++++|.+.+ +|..+..+++|+.|+
T Consensus 465 s~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~ 542 (636)
T 4eco_A 465 MGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFG 542 (636)
T ss_dssp CSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEE
T ss_pred CCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEE
Confidence 0000 0001125666666666655 3444444 56666666666666664 566666666666666
Q ss_pred e------eCCcccCCcChhhhcCCCccEEEccccccccCCChhhhhhcccccccccCCcccC
Q 042000 194 L------SNNKLNGKIPHQLVELKTLAIFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLC 249 (249)
Q Consensus 194 l------~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~n~~~c 249 (249)
+ ++|.+.+..|..+..+++|+.|++++|.++ .+|..+. ++|+.+++++|++.|
T Consensus 543 Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 543 IRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKIT--PNISVLDIKDNPNIS 601 (636)
T ss_dssp CCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC-BCCSCCC--TTCCEEECCSCTTCE
T ss_pred CCCCcccccCcccccChHHHhcCCCCCEEECCCCcCC-ccCHhHh--CcCCEEECcCCCCcc
Confidence 6 344555566666666666666666666663 5555443 566666777766543
No 32
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.94 E-value=3.2e-26 Score=188.46 Aligned_cols=119 Identities=28% Similarity=0.240 Sum_probs=100.2
Q ss_pred CcCCCCCccEEEccCccccccCCCcchhhhcccchhcccceEEcccCeecccCCcccCCCCCccEEeCCCCCCccCCchh
Q 042000 103 TFSNCSSLVTLDLSYNRINGSIPEWNIAYIYQGKVLSLLSGLDLSCNKLISHIPPQIGNLTRIETLNLSHNNLTGSIPST 182 (249)
Q Consensus 103 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 182 (249)
.+..+++|++|++++|.+.+..+.. ...+++|++|++++|.+++..+..+..+++|++|++++|.+.+..|..
T Consensus 294 ~~~~l~~L~~L~Ls~n~l~~~~~~~-------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 366 (455)
T 3v47_A 294 VFSHFTDLEQLTLAQNEINKIDDNA-------FWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQS 366 (455)
T ss_dssp TTTTCTTCCEEECTTSCCCEECTTT-------TTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTT
T ss_pred hcccCCCCCEEECCCCcccccChhH-------hcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhh
Confidence 4556677777777777766433321 234678999999999998877888999999999999999999777889
Q ss_pred ccCCcccCEEEeeCCcccCCcChhhhcCCCccEEEccccccccCCC
Q 042000 183 FSNLKHVESLDLSNNKLNGKIPHQLVELKTLAIFSVAYNNLSGEIP 228 (249)
Q Consensus 183 ~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 228 (249)
+..+++|++|++++|++.+..+..+..+++|+.|++++|.++...|
T Consensus 367 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 367 FLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred ccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 9999999999999999997777788999999999999999998776
No 33
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.94 E-value=2.1e-26 Score=180.13 Aligned_cols=213 Identities=21% Similarity=0.230 Sum_probs=178.6
Q ss_pred cEEEccCccCCCCCCccccCCCCCCeEEccCccccccccccccccCCCCeEeCCCCcCcCc------------cceEEec
Q 042000 24 RWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPENHLEGL------------IPILDIS 91 (249)
Q Consensus 24 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~------------~~~l~l~ 91 (249)
+.++.+++.+. .+|..+ .++|++|++++|.+....+..|..+++|++|++++|.+... +..++++
T Consensus 10 ~~l~c~~~~l~-~ip~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred CEEEcCCCCcc-cCCCCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 57888888887 455433 36899999999999854445689999999999999988632 6679999
Q ss_pred cccccccCCCCCcCCCCCccEEEccCccccccCCCcchhhhcccchhcccceEEcccCeecccCCcccCCCCCccEEeCC
Q 042000 92 DNNISGRLPSCTFSNCSSLVTLDLSYNRINGSIPEWNIAYIYQGKVLSLLSGLDLSCNKLISHIPPQIGNLTRIETLNLS 171 (249)
Q Consensus 92 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 171 (249)
+|.+. .++. .+..+++|++|++++|.+.+..+.. ....+++|++|++++|.+....+..+..+++|++|+++
T Consensus 87 ~n~i~-~l~~-~~~~l~~L~~L~l~~n~l~~~~~~~------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 158 (306)
T 2z66_A 87 FNGVI-TMSS-NFLGLEQLEHLDFQHSNLKQMSEFS------VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMA 158 (306)
T ss_dssp SCSEE-EEEE-EEETCTTCCEEECTTSEEESSTTTT------TTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECT
T ss_pred CCccc-cChh-hcCCCCCCCEEECCCCcccccccch------hhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECC
Confidence 99887 5665 5788999999999999987432211 12347889999999999888788888999999999999
Q ss_pred CCCCcc-CCchhccCCcccCEEEeeCCcccCCcChhhhcCCCccEEEccccccccCCChhhhhhcccccccccCCcc
Q 042000 172 HNNLTG-SIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLAIFSVAYNNLSGEIPEWTAQFATFNESSYEGNTF 247 (249)
Q Consensus 172 ~~~~~~-~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~n~~ 247 (249)
+|.+.+ ..|..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|+.+++++|..
T Consensus 159 ~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 235 (306)
T 2z66_A 159 GNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 235 (306)
T ss_dssp TCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCC
T ss_pred CCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCC
Confidence 999985 5788899999999999999999987788999999999999999999977777788999999999999975
No 34
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.94 E-value=1.1e-26 Score=198.34 Aligned_cols=235 Identities=21% Similarity=0.270 Sum_probs=185.2
Q ss_pred CeEeeccccCCC-----------------CCCCCC--CCCcccEEEccCccCCCCCCccccCCCCCCeEEccCcc-ccc-
Q 042000 1 SLVLSNNSLNGH-----------------MFPRNF--NLTNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNS-LSG- 59 (249)
Q Consensus 1 ~l~l~~~~l~~~-----------------~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~- 59 (249)
+|+|++|.+++. +|..++ ++++|++|++++|.+.+..|..++++++|++|++++|. +++
T Consensus 210 ~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~ 289 (636)
T 4eco_A 210 QFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGE 289 (636)
T ss_dssp EEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHH
T ss_pred EEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccc
Confidence 489999999975 999999 99999999999999998999999999999999999998 887
Q ss_pred ccccccccc------CCCCeEeCCCCcCcCc-----------cceEEeccccccccCCCCCcCCCCCccEEEccCccccc
Q 042000 60 KIPRWLGNL------TRLNHIIMPENHLEGL-----------IPILDISDNNISGRLPSCTFSNCSSLVTLDLSYNRING 122 (249)
Q Consensus 60 ~~~~~~~~l------~~L~~L~l~~~~~~~~-----------~~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 122 (249)
.+|..++.+ ++|++|++++|.+... +..+++++|.+.+.++ .+..+++|++|++++|.+.
T Consensus 290 ~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip--~~~~l~~L~~L~L~~N~l~- 366 (636)
T 4eco_A 290 QLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP--AFGSEIKLASLNLAYNQIT- 366 (636)
T ss_dssp HHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC--CCEEEEEESEEECCSSEEE-
T ss_pred cchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh--hhCCCCCCCEEECCCCccc-
Confidence 788888876 9999999999987743 3347788888776666 5677788888888888876
Q ss_pred cCCCcchhhhcccchhcc-cceEEcccCeecccCCcccCCCC--CccEEeCCCCCCccCCchhcc-------CCcccCEE
Q 042000 123 SIPEWNIAYIYQGKVLSL-LSGLDLSCNKLISHIPPQIGNLT--RIETLNLSHNNLTGSIPSTFS-------NLKHVESL 192 (249)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~l~~~~--~L~~L~l~~~~~~~~~~~~~~-------~~~~L~~l 192 (249)
.+|.. ...+.+ |++|++++|.++ ..|..+...+ +|+.|++++|.+.+..|..+. .+++|+.|
T Consensus 367 ~lp~~-------l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L 438 (636)
T 4eco_A 367 EIPAN-------FCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSI 438 (636)
T ss_dssp ECCTT-------SEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEE
T ss_pred cccHh-------hhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEE
Confidence 55542 123556 888888888876 4666666543 788888888888877777776 66788888
Q ss_pred EeeCCcccCCcChhhhcCCCccEEEccccccccCCChhhhh--------hcccccccccCCcc
Q 042000 193 DLSNNKLNGKIPHQLVELKTLAIFSVAYNNLSGEIPEWTAQ--------FATFNESSYEGNTF 247 (249)
Q Consensus 193 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~--------~~~l~~l~l~~n~~ 247 (249)
++++|.+.+..+..+..+++|+.|++++|.++ .+|..... +++|+.+++++|.+
T Consensus 439 ~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l 500 (636)
T 4eco_A 439 NLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKL 500 (636)
T ss_dssp ECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCC
T ss_pred ECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcC
Confidence 88888888544455566888888888888888 55543322 22888888888864
No 35
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.94 E-value=1e-25 Score=174.76 Aligned_cols=204 Identities=26% Similarity=0.277 Sum_probs=168.5
Q ss_pred CCCCCcccEEEccCccCCCCCCccccCCCCCCeEEccCccccccccccccccCCCCeEeCCCCcCcCccceEEecccccc
Q 042000 17 NFNLTNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPENHLEGLIPILDISDNNIS 96 (249)
Q Consensus 17 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~l~~~~~~ 96 (249)
+.+++++++++++++.+. .+|..+. +.+++|++++|.+....+..|..+++|++|++++|.+.
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-------------- 68 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-------------- 68 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC--------------
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC--------------
Confidence 557788999999999887 4454443 68899999999998777788999999999999999877
Q ss_pred ccCCCCCcCCCCCccEEEccCccccccCCCcchhhhcccchhcccceEEcccCeecccCCcccCCCCCccEEeCCCCCCc
Q 042000 97 GRLPSCTFSNCSSLVTLDLSYNRINGSIPEWNIAYIYQGKVLSLLSGLDLSCNKLISHIPPQIGNLTRIETLNLSHNNLT 176 (249)
Q Consensus 97 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 176 (249)
.++. ...+++|++|++++|.+. .+|.. ...+++|++|++++|+++...+..+..+++|+.|++++|.+.
T Consensus 69 -~~~~--~~~l~~L~~L~Ls~N~l~-~l~~~-------~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~ 137 (290)
T 1p9a_G 69 -KLQV--DGTLPVLGTLDLSHNQLQ-SLPLL-------GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137 (290)
T ss_dssp -EEEC--CSCCTTCCEEECCSSCCS-SCCCC-------TTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCC
T ss_pred -cccC--CCCCCcCCEEECCCCcCC-cCchh-------hccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCC
Confidence 3332 256788999999999886 44441 134678999999999988777778888999999999999999
Q ss_pred cCCchhccCCcccCEEEeeCCcccCCcChhhhcCCCccEEEccccccccCCChhhhhhcccccccccCCcccC
Q 042000 177 GSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLAIFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLC 249 (249)
Q Consensus 177 ~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~n~~~c 249 (249)
+..+..+..+++|+.|++++|++.+..+..+..+++|+.|++++|.++ .+|..+...++|+.+++.+|||.|
T Consensus 138 ~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 138 TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp CCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred ccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence 766677788999999999999998766677788999999999999998 678878888899999999999988
No 36
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=2.3e-26 Score=195.26 Aligned_cols=240 Identities=22% Similarity=0.297 Sum_probs=189.2
Q ss_pred eEeeccccCCCCCCCCCCCCcccEEEccCccCCCCCCccccCCCCCCeEEccCccccccccccccccCCCCeEeCCCCcC
Q 042000 2 LVLSNNSLNGHMFPRNFNLTNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPENHL 81 (249)
Q Consensus 2 l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 81 (249)
+++++|.++...+..+.++++|++|++++|.+.+..+.+|+.+++|++|++++|.+.+..+..|+.+++|++|++++|.+
T Consensus 56 l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 135 (597)
T 3oja_B 56 VTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL 135 (597)
T ss_dssp EEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCC
Confidence 67888888754444467899999999999999987778899999999999999999977777889999999999999987
Q ss_pred cCc----------cceEEeccccccccCCCCCcCCCCCccEEEccCccccccCCCcchhhh----------cc-------
Q 042000 82 EGL----------IPILDISDNNISGRLPSCTFSNCSSLVTLDLSYNRINGSIPEWNIAYI----------YQ------- 134 (249)
Q Consensus 82 ~~~----------~~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~----------~~------- 134 (249)
... +..+++++|.+. .++...+..+++|++|++++|.+.+. +...+..+ ..
T Consensus 136 ~~l~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~l~~L~~L~l~~n~l~~l~~~~~L 213 (597)
T 3oja_B 136 SSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHV-DLSLIPSLFHANVSYNLLSTLAIPIAV 213 (597)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTTTCTTCCEEECTTSCCSBC-CGGGCTTCSEEECCSSCCSEEECCTTC
T ss_pred CCCCHHHhccCCCCCEEEeeCCcCC-CCChhhhhcCCcCcEEECcCCCCCCc-ChhhhhhhhhhhcccCccccccCCchh
Confidence 654 456899999988 44444788999999999999988742 21110000 00
Q ss_pred --------------cchhcccceEEcccCeecccCCcccCCCCCccEEeCCCCCCccCCchhccCCcccCEEEeeCCccc
Q 042000 135 --------------GKVLSLLSGLDLSCNKLISHIPPQIGNLTRIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLN 200 (249)
Q Consensus 135 --------------~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~ 200 (249)
...+.+|+.|++++|.+++ +..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.
T Consensus 214 ~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 291 (597)
T 3oja_B 214 EELDASHNSINVVRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV 291 (597)
T ss_dssp SEEECCSSCCCEEECSCCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCC
T ss_pred heeeccCCcccccccccCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCC
Confidence 0111235555555655543 355777889999999999998777888899999999999999998
Q ss_pred CCcChhhhcCCCccEEEccccccccCCChhhhhhcccccccccCCcc
Q 042000 201 GKIPHQLVELKTLAIFSVAYNNLSGEIPEWTAQFATFNESSYEGNTF 247 (249)
Q Consensus 201 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~n~~ 247 (249)
+ ++.....+++|+.|++++|.++ .+|..+..+++|+.|++++|.+
T Consensus 292 ~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l 336 (597)
T 3oja_B 292 A-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSI 336 (597)
T ss_dssp E-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCC
T ss_pred C-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCC
Confidence 4 5666677899999999999998 6788888999999999999975
No 37
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.94 E-value=3.5e-26 Score=197.06 Aligned_cols=121 Identities=25% Similarity=0.231 Sum_probs=94.7
Q ss_pred CeEeeccccCCCCCCCCCCCCcccEEEccCccCCCCCCccccCCCCCCeEEccCccccccccccccccCCCCeEeCCCCc
Q 042000 1 SLVLSNNSLNGHMFPRNFNLTNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPENH 80 (249)
Q Consensus 1 ~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 80 (249)
+|++++|.+++..+..|.++++|++|++++|.+.+..+.+|+++++|++|++++|.+....+.+|..+++|++|++++|.
T Consensus 29 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~ 108 (680)
T 1ziw_A 29 VLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNS 108 (680)
T ss_dssp EEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC
T ss_pred EEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCc
Confidence 37888888887666778888999999999988887778888888999999999888875444568888899999998887
Q ss_pred CcCc----------cceEEeccccccccCCCCCcCCCCCccEEEccCccccc
Q 042000 81 LEGL----------IPILDISDNNISGRLPSCTFSNCSSLVTLDLSYNRING 122 (249)
Q Consensus 81 ~~~~----------~~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 122 (249)
+... +..+++++|.+.+..+. .+..+++|++|++++|.+.+
T Consensus 109 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~ 159 (680)
T 1ziw_A 109 IQKIKNNPFVKQKNLITLDLSHNGLSSTKLG-TQVQLENLQELLLSNNKIQA 159 (680)
T ss_dssp CCCCCSCTTTTCTTCCEEECCSSCCSCCCCC-SSSCCTTCCEEECCSSCCCC
T ss_pred cCccChhHccccCCCCEEECCCCcccccCch-hhcccccCCEEEccCCcccc
Confidence 6543 45688888887744333 67778888888888877653
No 38
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.94 E-value=1.8e-26 Score=203.01 Aligned_cols=236 Identities=23% Similarity=0.260 Sum_probs=154.4
Q ss_pred eEeeccccCCCCCCCCCCCCcccEEEccCccCCCCCCccccCCCCCCeEEccCccccccccccccccCCCCeEeCCCCcC
Q 042000 2 LVLSNNSLNGHMFPRNFNLTNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPENHL 81 (249)
Q Consensus 2 l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 81 (249)
|+|++|.+++..+..|..+++|++|++++|.+.+..+..|+.+++|++|++++|.+....+..|..+++|++|++++|.+
T Consensus 295 L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l 374 (844)
T 3j0a_A 295 LNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNAL 374 (844)
T ss_dssp EEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCS
T ss_pred EECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCC
Confidence 45555555555555555555555555555555544455555555566666655555544444555566666666666555
Q ss_pred cCc-----cceEEeccccccccCCCC---------------------CcCCCCCccEEEccCccccccCCCcchhhhccc
Q 042000 82 EGL-----IPILDISDNNISGRLPSC---------------------TFSNCSSLVTLDLSYNRINGSIPEWNIAYIYQG 135 (249)
Q Consensus 82 ~~~-----~~~l~l~~~~~~~~~~~~---------------------~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 135 (249)
... +..+++++|.+. .++.. .+..+++|++|++++|.+.+..+.. ..
T Consensus 375 ~~i~~~~~L~~L~l~~N~l~-~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~------~~ 447 (844)
T 3j0a_A 375 TTIHFIPSIPDIFLSGNKLV-TLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQ------TP 447 (844)
T ss_dssp CCCSSCCSCSEEEEESCCCC-CCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSS------SS
T ss_pred CcccCCCCcchhccCCCCcc-cccccccccceeecccCccccCchhhhhhcCCccceeeCCCCccccccccc------cc
Confidence 432 334445544443 22221 1225566777777777665322211 01
Q ss_pred chhcccceEEcccCeecc-----cCCcccCCCCCccEEeCCCCCCccCCchhccCCcccCEEEeeCCcccCCcChhhhcC
Q 042000 136 KVLSLLSGLDLSCNKLIS-----HIPPQIGNLTRIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVEL 210 (249)
Q Consensus 136 ~~~~~L~~L~l~~~~~~~-----~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~ 210 (249)
..+++|+.|++++|.+.. ..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+++..+..+.
T Consensus 448 ~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~-- 525 (844)
T 3j0a_A 448 SENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP-- 525 (844)
T ss_dssp CSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--
T ss_pred ccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--
Confidence 225678888888887652 2335577788999999999999977788889999999999999999876665554
Q ss_pred CCccEEEccccccccCCChhhhhhcccccccccCCcccC
Q 042000 211 KTLAIFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLC 249 (249)
Q Consensus 211 ~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~n~~~c 249 (249)
++|+.|++++|.+++..|..+ .+++.+++++||+.|
T Consensus 526 ~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~C 561 (844)
T 3j0a_A 526 ANLEILDISRNQLLAPNPDVF---VSLSVLDITHNKFIC 561 (844)
T ss_dssp SCCCEEEEEEECCCCCCSCCC---SSCCEEEEEEECCCC
T ss_pred ccccEEECCCCcCCCCChhHh---CCcCEEEecCCCccc
Confidence 899999999999998777654 588999999999998
No 39
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=1.2e-25 Score=184.81 Aligned_cols=218 Identities=25% Similarity=0.245 Sum_probs=184.4
Q ss_pred EeeccccCCCCCCCCCCCCcccEEEccCccCCCCCCccccCCCCCCeEEccCccccccccccccccCCCCeEeCCCCcCc
Q 042000 3 VLSNNSLNGHMFPRNFNLTNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPENHLE 82 (249)
Q Consensus 3 ~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 82 (249)
+.++..++ .+|..+. +++++|++++|.+.+..+..|+++++|++|++++|.+....+..|.++++|++|++++|.+.
T Consensus 60 ~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~ 136 (452)
T 3zyi_A 60 VCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT 136 (452)
T ss_dssp ECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred EECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCC
Confidence 44555665 5565554 68999999999999888889999999999999999998777789999999999999999888
Q ss_pred CccceEEeccccccccCCCCCcCCCCCccEEEccCccccccCCCcchhhhcccchhcccceEEcccC-eecccCCcccCC
Q 042000 83 GLIPILDISDNNISGRLPSCTFSNCSSLVTLDLSYNRINGSIPEWNIAYIYQGKVLSLLSGLDLSCN-KLISHIPPQIGN 161 (249)
Q Consensus 83 ~~~~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~l~~ 161 (249)
.++...+..+++|++|++++|.+.. ++.. ....+++|++|+++++ .+.......+..
T Consensus 137 ---------------~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~------~~~~l~~L~~L~l~~~~~l~~i~~~~~~~ 194 (452)
T 3zyi_A 137 ---------------VIPSGAFEYLSKLRELWLRNNPIES-IPSY------AFNRVPSLMRLDLGELKKLEYISEGAFEG 194 (452)
T ss_dssp ---------------BCCTTTSSSCTTCCEEECCSCCCCE-ECTT------TTTTCTTCCEEECCCCTTCCEECTTTTTT
T ss_pred ---------------ccChhhhcccCCCCEEECCCCCcce-eCHh------HHhcCCcccEEeCCCCCCccccChhhccC
Confidence 6666578899999999999999873 3332 1234788999999984 444445557888
Q ss_pred CCCccEEeCCCCCCccCCchhccCCcccCEEEeeCCcccCCcChhhhcCCCccEEEccccccccCCChhhhhhccccccc
Q 042000 162 LTRIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLAIFSVAYNNLSGEIPEWTAQFATFNESS 241 (249)
Q Consensus 162 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~ 241 (249)
+++|+.|++++|.+.+ +| .+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|+.++
T Consensus 195 l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 272 (452)
T 3zyi_A 195 LFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELN 272 (452)
T ss_dssp CTTCCEEECTTSCCSS-CC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCCEEECCCCcccc-cc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEE
Confidence 9999999999999984 44 477899999999999999988899999999999999999999988888899999999999
Q ss_pred ccCCcc
Q 042000 242 YEGNTF 247 (249)
Q Consensus 242 l~~n~~ 247 (249)
+++|.+
T Consensus 273 L~~N~l 278 (452)
T 3zyi_A 273 LAHNNL 278 (452)
T ss_dssp CCSSCC
T ss_pred CCCCcC
Confidence 999964
No 40
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=1.4e-25 Score=183.94 Aligned_cols=218 Identities=24% Similarity=0.253 Sum_probs=184.5
Q ss_pred EeeccccCCCCCCCCCCCCcccEEEccCccCCCCCCccccCCCCCCeEEccCccccccccccccccCCCCeEeCCCCcCc
Q 042000 3 VLSNNSLNGHMFPRNFNLTNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPENHLE 82 (249)
Q Consensus 3 ~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 82 (249)
+.++..++ .+|..+. ++++.|++++|.+....+..|+++++|++|++++|.+....+.+|.++++|++|++++|.+.
T Consensus 49 ~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~ 125 (440)
T 3zyj_A 49 ICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT 125 (440)
T ss_dssp ECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCS
T ss_pred EeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCC
Confidence 44555666 5666655 78999999999998877888999999999999999998777789999999999999999888
Q ss_pred CccceEEeccccccccCCCCCcCCCCCccEEEccCccccccCCCcchhhhcccchhcccceEEcccC-eecccCCcccCC
Q 042000 83 GLIPILDISDNNISGRLPSCTFSNCSSLVTLDLSYNRINGSIPEWNIAYIYQGKVLSLLSGLDLSCN-KLISHIPPQIGN 161 (249)
Q Consensus 83 ~~~~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~l~~ 161 (249)
.++...+..+++|++|++++|.+.. ++.. ....+++|++|+++++ .+....+..+..
T Consensus 126 ---------------~~~~~~~~~l~~L~~L~L~~N~i~~-~~~~------~~~~l~~L~~L~l~~~~~l~~i~~~~~~~ 183 (440)
T 3zyj_A 126 ---------------TIPNGAFVYLSKLKELWLRNNPIES-IPSY------AFNRIPSLRRLDLGELKRLSYISEGAFEG 183 (440)
T ss_dssp ---------------SCCTTTSCSCSSCCEEECCSCCCCE-ECTT------TTTTCTTCCEEECCCCTTCCEECTTTTTT
T ss_pred ---------------eeCHhHhhccccCceeeCCCCcccc-cCHH------HhhhCcccCEeCCCCCCCcceeCcchhhc
Confidence 6666578899999999999999873 3321 1234788999999985 444445557888
Q ss_pred CCCccEEeCCCCCCccCCchhccCCcccCEEEeeCCcccCCcChhhhcCCCccEEEccccccccCCChhhhhhccccccc
Q 042000 162 LTRIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLAIFSVAYNNLSGEIPEWTAQFATFNESS 241 (249)
Q Consensus 162 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~ 241 (249)
+++|+.|++++|.+. .+| .+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|+.|+
T Consensus 184 l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 261 (440)
T 3zyj_A 184 LSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEIN 261 (440)
T ss_dssp CSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEE
T ss_pred ccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEE
Confidence 999999999999998 455 477899999999999999988899999999999999999999988888899999999999
Q ss_pred ccCCcc
Q 042000 242 YEGNTF 247 (249)
Q Consensus 242 l~~n~~ 247 (249)
+++|.+
T Consensus 262 L~~N~l 267 (440)
T 3zyj_A 262 LAHNNL 267 (440)
T ss_dssp CTTSCC
T ss_pred CCCCCC
Confidence 999964
No 41
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.94 E-value=2.3e-25 Score=188.00 Aligned_cols=61 Identities=28% Similarity=0.482 Sum_probs=51.3
Q ss_pred cccCEEEeeCCcccCCcChhhhcCCCccEEEccccccccCCChh-hhhhcccccccccCCcccC
Q 042000 187 KHVESLDLSNNKLNGKIPHQLVELKTLAIFSVAYNNLSGEIPEW-TAQFATFNESSYEGNTFLC 249 (249)
Q Consensus 187 ~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~~~~l~~l~l~~n~~~c 249 (249)
++|+.|++++|.+. .+|..+..+++|+.|++++|.++ .+|.. +..+++|+.+++++||+.|
T Consensus 450 ~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c 511 (562)
T 3a79_B 450 PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDC 511 (562)
T ss_dssp TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCC
T ss_pred CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCC
Confidence 57777888888777 56666668999999999999999 56665 8899999999999999988
No 42
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=3.1e-27 Score=185.69 Aligned_cols=214 Identities=24% Similarity=0.263 Sum_probs=147.1
Q ss_pred CCCcccEEEccCccCCCCCCccccCCCCCCeEEccCccccccccccccccCCCCeEeCCCCcCcCc-----cceEEeccc
Q 042000 19 NLTNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPENHLEGL-----IPILDISDN 93 (249)
Q Consensus 19 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-----~~~l~l~~~ 93 (249)
.+++|++|++++|.+.+..+..|+++++|++|++++|.+.+..+ +..+++|++|++++|.+... ++.+++++|
T Consensus 32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n 109 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANN 109 (317)
T ss_dssp TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEEECTTCCEEECCSS
T ss_pred cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccccCCCCcCEEECCCC
Confidence 45678888888887776666677778888888888887764332 77777888888888776543 556777777
Q ss_pred cccccCCCCCcCCCCCccEEEccCccccccCCCcchhhhcccchhcccceEEcccCeecccCCcccC-CCCCccEEeCCC
Q 042000 94 NISGRLPSCTFSNCSSLVTLDLSYNRINGSIPEWNIAYIYQGKVLSLLSGLDLSCNKLISHIPPQIG-NLTRIETLNLSH 172 (249)
Q Consensus 94 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~ 172 (249)
.+.+ ++. ..+++|++|++++|.+.+..+. ....+++|++|++++|.+.+..+..+. .+++|++|++++
T Consensus 110 ~l~~-~~~---~~~~~L~~L~l~~N~l~~~~~~-------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~ 178 (317)
T 3o53_A 110 NISR-VSC---SRGQGKKNIYLANNKITMLRDL-------DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178 (317)
T ss_dssp CCSE-EEE---CCCSSCEEEECCSSCCCSGGGB-------CTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTT
T ss_pred ccCC-cCc---cccCCCCEEECCCCCCCCccch-------hhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCC
Confidence 7663 222 2356788888888877632221 112356788888888877665555443 567888888888
Q ss_pred CCCccCCchhccCCcccCEEEeeCCcccCCcChhhhcCCCccEEEccccccccCCChhhhhhcccccccccCCcccC
Q 042000 173 NNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLAIFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLC 249 (249)
Q Consensus 173 ~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~n~~~c 249 (249)
|.+.+. +.. ..+++|++|++++|.+.+ ++..+..+++|+.|++++|.++ .+|..+..+++|+.+++++|++.|
T Consensus 179 N~l~~~-~~~-~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~ 251 (317)
T 3o53_A 179 NFIYDV-KGQ-VVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHC 251 (317)
T ss_dssp SCCCEE-ECC-CCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBH
T ss_pred CcCccc-ccc-cccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccC
Confidence 887743 322 247778888888888873 4445777788888888888877 466667777888888888887754
No 43
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.94 E-value=8.8e-26 Score=190.77 Aligned_cols=232 Identities=21% Similarity=0.266 Sum_probs=168.2
Q ss_pred EeeccccCCCCCCCCCCCCcccEEEccCccCCCCCCccccCCCCCCeEEccCccccccccccccccCCCCeEeCCCCcCc
Q 042000 3 VLSNNSLNGHMFPRNFNLTNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPENHLE 82 (249)
Q Consensus 3 ~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 82 (249)
++++|.++ .+|..+..+ +|++|++++|.+. ..|. ..+++|+++++++|......+. ..+++|++|++++|.+.
T Consensus 288 ~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~ 360 (570)
T 2z63_A 288 SLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLS 360 (570)
T ss_dssp EEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCB
T ss_pred EecCccch-hhhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccC
Confidence 34444443 334444444 4444444444443 2221 2344555555555544322222 46677888888777765
Q ss_pred Cc------------cceEEeccccccccCCCCCcCCCCCccEEEccCccccccCCCcchhhhcccchhcccceEEcccCe
Q 042000 83 GL------------IPILDISDNNISGRLPSCTFSNCSSLVTLDLSYNRINGSIPEWNIAYIYQGKVLSLLSGLDLSCNK 150 (249)
Q Consensus 83 ~~------------~~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 150 (249)
.. +..+++++|.+. .++. .+..+++|++|++++|.+.+..+.. ....+++|++|++++|.
T Consensus 361 ~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~------~~~~l~~L~~L~l~~n~ 432 (570)
T 2z63_A 361 FKGCCSQSDFGTTSLKYLDLSFNGVI-TMSS-NFLGLEQLEHLDFQHSNLKQMSEFS------VFLSLRNLIYLDISHTH 432 (570)
T ss_dssp EEEEEEHHHHTCSCCCEEECCSCSEE-EEEE-EEETCTTCCEEECTTSEEESCTTSC------TTTTCTTCCEEECTTSC
T ss_pred ccccccccccccCccCEEECCCCccc-cccc-cccccCCCCEEEccCCccccccchh------hhhcCCCCCEEeCcCCc
Confidence 32 455777777766 4444 3778888999999998887544322 12346789999999999
Q ss_pred ecccCCcccCCCCCccEEeCCCCCCc-cCCchhccCCcccCEEEeeCCcccCCcChhhhcCCCccEEEccccccccCCCh
Q 042000 151 LISHIPPQIGNLTRIETLNLSHNNLT-GSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLAIFSVAYNNLSGEIPE 229 (249)
Q Consensus 151 ~~~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 229 (249)
+....+..+..+++|++|++++|.+. +..|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+++..+.
T Consensus 433 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 512 (570)
T 2z63_A 433 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDG 512 (570)
T ss_dssp CEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred ccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHH
Confidence 88878888899999999999999987 46788899999999999999999988899999999999999999999987777
Q ss_pred hhhhhcccccccccCCcccC
Q 042000 230 WTAQFATFNESSYEGNTFLC 249 (249)
Q Consensus 230 ~~~~~~~l~~l~l~~n~~~c 249 (249)
.+..+++|+.+++++|++.|
T Consensus 513 ~~~~l~~L~~L~l~~N~~~~ 532 (570)
T 2z63_A 513 IFDRLTSLQKIWLHTNPWDC 532 (570)
T ss_dssp TTTTCTTCCEEECCSSCBCC
T ss_pred HhhcccCCcEEEecCCcccC
Confidence 88999999999999999987
No 44
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.94 E-value=3.7e-26 Score=191.13 Aligned_cols=243 Identities=19% Similarity=0.155 Sum_probs=169.3
Q ss_pred CeEeeccccCCCCCCCCCCCCcccEEEccCccCCCCCCccccCCCCCCeEEccCccccccccccccccCCCCeEeCCCCc
Q 042000 1 SLVLSNNSLNGHMFPRNFNLTNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPENH 80 (249)
Q Consensus 1 ~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 80 (249)
++++++|.++ .+|..+. +++++|++++|.+.+..+.+|+++++|++|++++|.+.+..|..|..+++|++|++++|.
T Consensus 4 ~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 80 (520)
T 2z7x_B 4 LVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80 (520)
T ss_dssp EEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSC
T ss_pred eEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCc
Confidence 3788888888 5777666 788888888888886666778888888888888888886667788888888888888888
Q ss_pred CcCc-------cceEEeccccccc-cCCCCCcCCCCCccEEEccCccccc-------------------------cCCCc
Q 042000 81 LEGL-------IPILDISDNNISG-RLPSCTFSNCSSLVTLDLSYNRING-------------------------SIPEW 127 (249)
Q Consensus 81 ~~~~-------~~~l~l~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~-------------------------~~~~~ 127 (249)
+... ++.+++++|.+.+ .+|. .+..+++|++|++++|.+.+ ..|..
T Consensus 81 l~~lp~~~l~~L~~L~L~~N~l~~~~~p~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~ 159 (520)
T 2z7x_B 81 LVKISCHPTVNLKHLDLSFNAFDALPICK-EFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEG 159 (520)
T ss_dssp CCEEECCCCCCCSEEECCSSCCSSCCCCG-GGGGCTTCCEEEEEESSCCGGGGGGGTTSCEEEEEEEECTTTTSSCCTTT
T ss_pred eeecCccccCCccEEeccCCccccccchh-hhccCCcceEEEecCcccchhhccccccceeeEEEeeccccccccccccc
Confidence 7643 4567888888764 2444 67777777777777766542 11111
Q ss_pred chhhh-------------------------------------------------cccc----------------------
Q 042000 128 NIAYI-------------------------------------------------YQGK---------------------- 136 (249)
Q Consensus 128 ~~~~~-------------------------------------------------~~~~---------------------- 136 (249)
..... ....
T Consensus 160 l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~ 239 (520)
T 2z7x_B 160 LQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIR 239 (520)
T ss_dssp TTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHH
T ss_pred ccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHH
Confidence 00000 0000
Q ss_pred -----hhcccceEEcccCeecccCCccc----------------------------------------------------
Q 042000 137 -----VLSLLSGLDLSCNKLISHIPPQI---------------------------------------------------- 159 (249)
Q Consensus 137 -----~~~~L~~L~l~~~~~~~~~~~~l---------------------------------------------------- 159 (249)
...+|++|++++|.+.+..|..+
T Consensus 240 ~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 319 (520)
T 2z7x_B 240 ILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC 319 (520)
T ss_dssp HHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCC
T ss_pred HHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccc
Confidence 01267788888887764444443
Q ss_pred -CCCCCccEEeCCCCCCccCCchhccCCcccCEEEeeCCcccC--CcChhhhcCCCccEEEccccccccCCChh-hhhhc
Q 042000 160 -GNLTRIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNG--KIPHQLVELKTLAIFSVAYNNLSGEIPEW-TAQFA 235 (249)
Q Consensus 160 -~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~--~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~~~ 235 (249)
..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+ ..|..+..+++|++|++++|.+++.+|.. +..++
T Consensus 320 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~ 399 (520)
T 2z7x_B 320 PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTK 399 (520)
T ss_dssp CSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCT
T ss_pred hhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCc
Confidence 456677778888887776667777777888888888887775 44566777888888888888877645543 56677
Q ss_pred ccccccccCCcc
Q 042000 236 TFNESSYEGNTF 247 (249)
Q Consensus 236 ~l~~l~l~~n~~ 247 (249)
+|+.+++++|..
T Consensus 400 ~L~~L~Ls~N~l 411 (520)
T 2z7x_B 400 SLLSLNMSSNIL 411 (520)
T ss_dssp TCCEEECCSSCC
T ss_pred cCCEEECcCCCC
Confidence 888888887753
No 45
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.94 E-value=1.4e-25 Score=190.86 Aligned_cols=231 Identities=20% Similarity=0.135 Sum_probs=191.5
Q ss_pred eEeeccccCCCCCCCCCCCCcccEEEccCccCCCCCCccccCCCCCCeEEccCccccccccccccccCCCCeEeCCCCcC
Q 042000 2 LVLSNNSLNGHMFPRNFNLTNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPENHL 81 (249)
Q Consensus 2 l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 81 (249)
+++++|.++ .++ .+..+++|++|++++|.+ +.+| .+ .+++|++|++++|..... ..+..+++|++|++++|.+
T Consensus 290 L~l~~~~~~-~l~-~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l 362 (606)
T 3vq2_A 290 MSLAGVSIK-YLE-DVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSIS--FKKVALPSLSYLDLSRNAL 362 (606)
T ss_dssp EEEESCCCC-CCC-CCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEE--CCCCCCTTCCEEECCSSCE
T ss_pred EEecCccch-hhh-hccccccCCEEEcccccC-cccc-cC-CCCccceeeccCCcCccc--hhhccCCCCCEEECcCCcc
Confidence 567777775 344 777888888888888888 4566 45 788888888888854433 2667889999999999887
Q ss_pred cCc------------cceEEeccccccccCCCCCcCCCCCccEEEccCccccccCCCcchhhhcccchhcccceEEcccC
Q 042000 82 EGL------------IPILDISDNNISGRLPSCTFSNCSSLVTLDLSYNRINGSIPEWNIAYIYQGKVLSLLSGLDLSCN 149 (249)
Q Consensus 82 ~~~------------~~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 149 (249)
... +..+++++|.+. .++. .+..+++|++|++++|.+.+..+.. ....+++|++|++++|
T Consensus 363 ~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~------~~~~l~~L~~L~l~~n 434 (606)
T 3vq2_A 363 SFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSA-NFMGLEELQHLDFQHSTLKRVTEFS------AFLSLEKLLYLDISYT 434 (606)
T ss_dssp EEEEECCHHHHCCSCCCEEECCSCSEE-EECC-CCTTCTTCCEEECTTSEEESTTTTT------TTTTCTTCCEEECTTS
T ss_pred CCCcchhhhhccCCcccEeECCCCccc-cchh-hccCCCCCCeeECCCCccCCccChh------hhhccccCCEEECcCC
Confidence 643 567899999887 5664 7888999999999999987554421 1234788999999999
Q ss_pred eecccCCcccCCCCCccEEeCCCCCCcc-CCchhccCCcccCEEEeeCCcccCCcChhhhcCCCccEEEccccccccCCC
Q 042000 150 KLISHIPPQIGNLTRIETLNLSHNNLTG-SIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLAIFSVAYNNLSGEIP 228 (249)
Q Consensus 150 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 228 (249)
.+....+..+..+++|+.|++++|.+.+ ..|..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+++..|
T Consensus 435 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 514 (606)
T 3vq2_A 435 NTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDS 514 (606)
T ss_dssp CCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEG
T ss_pred CCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCH
Confidence 9988888889999999999999999986 368889999999999999999998888999999999999999999998889
Q ss_pred hhhhhhcccccccccCCcc
Q 042000 229 EWTAQFATFNESSYEGNTF 247 (249)
Q Consensus 229 ~~~~~~~~l~~l~l~~n~~ 247 (249)
..+..+++|+.+++++|.+
T Consensus 515 ~~~~~l~~L~~L~l~~N~l 533 (606)
T 3vq2_A 515 SHYNQLYSLSTLDCSFNRI 533 (606)
T ss_dssp GGTTTCTTCCEEECTTSCC
T ss_pred HHccCCCcCCEEECCCCcC
Confidence 9999999999999999975
No 46
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.94 E-value=2.9e-26 Score=192.97 Aligned_cols=125 Identities=23% Similarity=0.244 Sum_probs=98.8
Q ss_pred CeEeeccccCCCCCCCCCCCCcccEEEccCccCCCCCCccccCCCCCCeEEccCccccccccccccccCCCCeEeCCCCc
Q 042000 1 SLVLSNNSLNGHMFPRNFNLTNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPENH 80 (249)
Q Consensus 1 ~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 80 (249)
+|++++|.+++..+..|.++++|++|++++|.+.+..+.+|+++++|++|++++|.+.+..+..++.+++|++|++++|.
T Consensus 30 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 109 (549)
T 2z81_A 30 SLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNP 109 (549)
T ss_dssp EEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCC
T ss_pred EEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCc
Confidence 47899999987778889999999999999999987777888999999999999999886666668899999999999887
Q ss_pred CcCc-----------cceEEeccccccccCCCCCcCCCCCccEEEccCccccccCC
Q 042000 81 LEGL-----------IPILDISDNNISGRLPSCTFSNCSSLVTLDLSYNRINGSIP 125 (249)
Q Consensus 81 ~~~~-----------~~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 125 (249)
+... ++.+++++|...+.++...+..+++|++|++++|.+.+..|
T Consensus 110 l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 165 (549)
T 2z81_A 110 YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQS 165 (549)
T ss_dssp CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECT
T ss_pred ccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccCh
Confidence 7632 45678888774445554467777777777777777665443
No 47
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.94 E-value=6.6e-26 Score=189.61 Aligned_cols=111 Identities=23% Similarity=0.325 Sum_probs=80.6
Q ss_pred chhcccceEEcccCeecccCCcccCCCCCccEEeCCCCCCcc--CCchhccCCcccCEEEeeCCcccCCcChh-hhcC--
Q 042000 136 KVLSLLSGLDLSCNKLISHIPPQIGNLTRIETLNLSHNNLTG--SIPSTFSNLKHVESLDLSNNKLNGKIPHQ-LVEL-- 210 (249)
Q Consensus 136 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~l~l~~n~~~~~~~~~-~~~~-- 210 (249)
..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+ ..|..+..+++|++|++++|.+.+.+|.. +..+
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~ 400 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS 400 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence 346788999999998887777888888999999999998884 44566778888888888888877534432 3333
Q ss_pred --------------------CCccEEEccccccccCCChhhhhhcccccccccCCcc
Q 042000 211 --------------------KTLAIFSVAYNNLSGEIPEWTAQFATFNESSYEGNTF 247 (249)
Q Consensus 211 --------------------~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~n~~ 247 (249)
++|+.|++++|.++ .+|..+..+++|+.+++++|.+
T Consensus 401 L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l 456 (520)
T 2z7x_B 401 LLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQL 456 (520)
T ss_dssp CCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCC
T ss_pred CCEEECcCCCCCcchhhhhcccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcC
Confidence 45566666666665 5666666777778888777754
No 48
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=1.6e-26 Score=191.50 Aligned_cols=214 Identities=24% Similarity=0.247 Sum_probs=148.9
Q ss_pred CCCcccEEEccCccCCCCCCccccCCCCCCeEEccCccccccccccccccCCCCeEeCCCCcCcCc-----cceEEeccc
Q 042000 19 NLTNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPENHLEGL-----IPILDISDN 93 (249)
Q Consensus 19 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-----~~~l~l~~~ 93 (249)
.+++|++|++++|.+.+..|.+|+.+++|++|++++|.+.+..+ +..+++|++|++++|.+... +..+++++|
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N 109 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANN 109 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSS
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCC
Confidence 34477778888777776666677777778888887777764433 67777777787777776543 455777777
Q ss_pred cccccCCCCCcCCCCCccEEEccCccccccCCCcchhhhcccchhcccceEEcccCeecccCCcccC-CCCCccEEeCCC
Q 042000 94 NISGRLPSCTFSNCSSLVTLDLSYNRINGSIPEWNIAYIYQGKVLSLLSGLDLSCNKLISHIPPQIG-NLTRIETLNLSH 172 (249)
Q Consensus 94 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~ 172 (249)
.+.+ ++. ..+++|++|++++|.+.+..|.. ...+++|++|++++|.++...+..+. .+++|+.|++++
T Consensus 110 ~l~~-~~~---~~l~~L~~L~L~~N~l~~~~~~~-------~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~ 178 (487)
T 3oja_A 110 NISR-VSC---SRGQGKKNIYLANNKITMLRDLD-------EGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178 (487)
T ss_dssp CCCC-EEE---CCCSSCEEEECCSSCCCSGGGBC-------GGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTT
T ss_pred cCCC-CCc---cccCCCCEEECCCCCCCCCCchh-------hcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCC
Confidence 7663 222 23567888888888776443321 12366788888888887765555554 577888888888
Q ss_pred CCCccCCchhccCCcccCEEEeeCCcccCCcChhhhcCCCccEEEccccccccCCChhhhhhcccccccccCCcccC
Q 042000 173 NNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLAIFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLC 249 (249)
Q Consensus 173 ~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~n~~~c 249 (249)
|.+.+. +. ...+++|+.|++++|.+++ .|..+..+++|+.|++++|.+++ +|..+..+++|+.+++++|++.|
T Consensus 179 N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c 251 (487)
T 3oja_A 179 NFIYDV-KG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHC 251 (487)
T ss_dssp SCCCEE-EC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCH
T ss_pred Cccccc-cc-cccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcC
Confidence 888743 32 2347788888888888874 44447777888888888888873 66667777888888888888764
No 49
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.94 E-value=1.5e-25 Score=195.47 Aligned_cols=237 Identities=20% Similarity=0.262 Sum_probs=139.5
Q ss_pred eEeeccccCCCCCC--CCCCCCcccEEEccCccCCCCCCccccCCCCCCeEEccCccccccccccccccCC-CCeEeCCC
Q 042000 2 LVLSNNSLNGHMFP--RNFNLTNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTR-LNHIIMPE 78 (249)
Q Consensus 2 l~l~~~~l~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~-L~~L~l~~ 78 (249)
|+|++|.++ .+|. .+.++++|+.|++++|.+. .+| .|+++++|++|++++|.+. .+|..+..+++ |++|++++
T Consensus 553 L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~ 628 (876)
T 4ecn_A 553 FYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSH 628 (876)
T ss_dssp EECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCS
T ss_pred EEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcC
Confidence 677788777 6776 7777888888888888777 555 6777777888888877777 66777777777 77777777
Q ss_pred CcCcCc-----------cceEEeccccccccCCCC--CcC--CCCCccEEEccCccccc---------------------
Q 042000 79 NHLEGL-----------IPILDISDNNISGRLPSC--TFS--NCSSLVTLDLSYNRING--------------------- 122 (249)
Q Consensus 79 ~~~~~~-----------~~~l~l~~~~~~~~~~~~--~~~--~l~~L~~L~l~~~~~~~--------------------- 122 (249)
|.+... +..+++++|.+.+.++.. .+. .+++|+.|++++|.+..
T Consensus 629 N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~ 708 (876)
T 4ecn_A 629 NKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNL 708 (876)
T ss_dssp SCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCC
T ss_pred CCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCc
Confidence 766532 344666666665433210 111 22345555555554441
Q ss_pred --cCCCcchhhhc-ccchhcccceEEcccCeecccCCcccC--CCCCccEEeCCCCCCccCCchhccCCcccCEEEeeC-
Q 042000 123 --SIPEWNIAYIY-QGKVLSLLSGLDLSCNKLISHIPPQIG--NLTRIETLNLSHNNLTGSIPSTFSNLKHVESLDLSN- 196 (249)
Q Consensus 123 --~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~l~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~- 196 (249)
.+|...+.... ....+++|+.|++++|.++ ..+..+. .+++|+.|++++|.+.+ +|..+..+++|+.|++++
T Consensus 709 L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N 786 (876)
T 4ecn_A 709 MTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQ 786 (876)
T ss_dssp CSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCC
T ss_pred CCccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCC
Confidence 33322111000 0011225666666666655 3444444 56666666666666664 555555666666666654
Q ss_pred -----CcccCCcChhhhcCCCccEEEccccccccCCChhhhhhcccccccccCCcc
Q 042000 197 -----NKLNGKIPHQLVELKTLAIFSVAYNNLSGEIPEWTAQFATFNESSYEGNTF 247 (249)
Q Consensus 197 -----n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~n~~ 247 (249)
|.+.+..|..+..+++|+.|++++|.+ +.+|..+. ++|+.|++++|++
T Consensus 787 ~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l 839 (876)
T 4ecn_A 787 RDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPN 839 (876)
T ss_dssp BCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTT
T ss_pred CCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCC
Confidence 455555666666666666666666666 35555443 4666666666654
No 50
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.93 E-value=6.8e-25 Score=174.47 Aligned_cols=226 Identities=23% Similarity=0.345 Sum_probs=147.5
Q ss_pred CeEeeccccCCCCCCCCCCCCcccEEEccCccCCCCCCccccCCCCCCeEEccCccccccccccccccCCCCeEeCCCCc
Q 042000 1 SLVLSNNSLNGHMFPRNFNLTNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPENH 80 (249)
Q Consensus 1 ~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 80 (249)
+|++++|.++. .+.+.++++|++|++++|.+... +. +..+++|++|++++|..... ...+..+++|++|++++|.
T Consensus 92 ~L~L~~n~i~~--~~~~~~l~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~-~~~~~~l~~L~~L~l~~~~ 166 (347)
T 4fmz_A 92 NLYIGTNKITD--ISALQNLTNLRELYLNEDNISDI-SP-LANLTKMYSLNLGANHNLSD-LSPLSNMTGLNYLTVTESK 166 (347)
T ss_dssp EEECCSSCCCC--CGGGTTCTTCSEEECTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCC-CGGGTTCTTCCEEECCSSC
T ss_pred EEEccCCcccC--chHHcCCCcCCEEECcCCcccCc-hh-hccCCceeEEECCCCCCccc-ccchhhCCCCcEEEecCCC
Confidence 36788887774 34677888888888888877643 22 66777777777777754422 2335566666666666655
Q ss_pred CcCc--------cceEEeccccccccCCC--------------------CCcCCCCCccEEEccCccccccCCCcchhhh
Q 042000 81 LEGL--------IPILDISDNNISGRLPS--------------------CTFSNCSSLVTLDLSYNRINGSIPEWNIAYI 132 (249)
Q Consensus 81 ~~~~--------~~~l~l~~~~~~~~~~~--------------------~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 132 (249)
+... +..+++++|.+. .++. ..+..+++|++|++++|.+... +.
T Consensus 167 ~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~-~~------ 238 (347)
T 4fmz_A 167 VKDVTPIANLTDLYSLSLNYNQIE-DISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDL-SP------ 238 (347)
T ss_dssp CCCCGGGGGCTTCSEEECTTSCCC-CCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC-GG------
T ss_pred cCCchhhccCCCCCEEEccCCccc-ccccccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCC-cc------
Confidence 4432 334555555443 2211 0134455666666666655421 11
Q ss_pred cccchhcccceEEcccCeecccCCcccCCCCCccEEeCCCCCCccCCchhccCCcccCEEEeeCCcccCCcChhhhcCCC
Q 042000 133 YQGKVLSLLSGLDLSCNKLISHIPPQIGNLTRIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKT 212 (249)
Q Consensus 133 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~ 212 (249)
...+++|++|++++|.+++. ..+..+++|+.|++++|.+.+ . ..+..+++|+.|++++|.+.+..+..+..+++
T Consensus 239 --~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 312 (347)
T 4fmz_A 239 --LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISD-I-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTN 312 (347)
T ss_dssp --GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTT
T ss_pred --hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCC-C-hhhcCCCCCCEEECcCCcCCCcChhHhhcccc
Confidence 23456777788877776553 456677788888888888774 3 34667788888888888887777777888888
Q ss_pred ccEEEccccccccCCChhhhhhcccccccccCCcc
Q 042000 213 LAIFSVAYNNLSGEIPEWTAQFATFNESSYEGNTF 247 (249)
Q Consensus 213 L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~n~~ 247 (249)
|+.|++++|.+++..| +..+++|+.+++++|++
T Consensus 313 L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 313 LTTLFLSQNHITDIRP--LASLSKMDSADFANQVI 345 (347)
T ss_dssp CSEEECCSSSCCCCGG--GGGCTTCSEESSSCC--
T ss_pred CCEEEccCCccccccC--hhhhhccceeehhhhcc
Confidence 8888888888875444 77788888888888875
No 51
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=2.6e-26 Score=190.13 Aligned_cols=231 Identities=23% Similarity=0.195 Sum_probs=191.8
Q ss_pred CeEeeccccCCCCCCCCCCCCcccEEEccCccCCCCCCccccCCCCCCeEEccCccccccccccccccCCCCeEeCCCCc
Q 042000 1 SLVLSNNSLNGHMFPRNFNLTNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPENH 80 (249)
Q Consensus 1 ~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 80 (249)
+|+|++|.+++..|..|.++++|++|++++|.+.+..+ ++.+++|++|++++|.+.+. + ..++|++|++++|.
T Consensus 38 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l-~----~~~~L~~L~L~~N~ 110 (487)
T 3oja_A 38 ELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-L----VGPSIETLHAANNN 110 (487)
T ss_dssp EEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEE-E----ECTTCCEEECCSSC
T ss_pred EEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCC-C----CCCCcCEEECcCCc
Confidence 48999999998888899999999999999999975544 88999999999999998733 2 33899999999998
Q ss_pred CcCc-------cceEEeccccccccCCCCCcCCCCCccEEEccCccccccCCCcchhhhcccchhcccceEEcccCeecc
Q 042000 81 LEGL-------IPILDISDNNISGRLPSCTFSNCSSLVTLDLSYNRINGSIPEWNIAYIYQGKVLSLLSGLDLSCNKLIS 153 (249)
Q Consensus 81 ~~~~-------~~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 153 (249)
+... +..+++++|.+.+..+. .+..+++|++|++++|.+.+..|... ...+++|++|++++|.++.
T Consensus 111 l~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~l------~~~l~~L~~L~Ls~N~l~~ 183 (487)
T 3oja_A 111 ISRVSCSRGQGKKNIYLANNKITMLRDL-DEGCRSRVQYLDLKLNEIDTVNFAEL------AASSDTLEHLNLQYNFIYD 183 (487)
T ss_dssp CCCEEECCCSSCEEEECCSSCCCSGGGB-CGGGGSSEEEEECTTSCCCEEEGGGG------GGGTTTCCEEECTTSCCCE
T ss_pred CCCCCccccCCCCEEECCCCCCCCCCch-hhcCCCCCCEEECCCCCCCCcChHHH------hhhCCcccEEecCCCcccc
Confidence 8764 56789999999844444 78889999999999999886544321 1236789999999999876
Q ss_pred cCCcccCCCCCccEEeCCCCCCccCCchhccCCcccCEEEeeCCcccCCcChhhhcCCCccEEEccccccc-cCCChhhh
Q 042000 154 HIPPQIGNLTRIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLAIFSVAYNNLS-GEIPEWTA 232 (249)
Q Consensus 154 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~ 232 (249)
.. ....+++|+.|++++|.+.+ +|..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.+. +.+|..+.
T Consensus 184 ~~--~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~ 259 (487)
T 3oja_A 184 VK--GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFS 259 (487)
T ss_dssp EE--CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCBCHHHHHHHHT
T ss_pred cc--ccccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCCCCcCcchHHHHH
Confidence 52 23458999999999999995 5555888999999999999998 47778888999999999999987 56778888
Q ss_pred hhccccccccc-------CCcccC
Q 042000 233 QFATFNESSYE-------GNTFLC 249 (249)
Q Consensus 233 ~~~~l~~l~l~-------~n~~~c 249 (249)
.++.++.+.+. ++++.|
T Consensus 260 ~l~~L~~l~~~~~~~~~~~~~~~c 283 (487)
T 3oja_A 260 KNQRVQTVAKQTVKKLTGQNEEEC 283 (487)
T ss_dssp TCHHHHHHHHHHHHHHTSSSSCCC
T ss_pred hCCCCcEEeccccccccCCCcccc
Confidence 88888888886 777766
No 52
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=5.7e-27 Score=183.79 Aligned_cols=223 Identities=24% Similarity=0.326 Sum_probs=168.1
Q ss_pred eEeeccccC-CCCCCCCC-------CCCcccEEEccCccCCCCCCccc--cCCCCCCeEEccCcccccccccccccc---
Q 042000 2 LVLSNNSLN-GHMFPRNF-------NLTNLRWLQLDGNHFVGENPQSL--SKCSSLEGLYLNNNSLSGKIPRWLGNL--- 68 (249)
Q Consensus 2 l~l~~~~l~-~~~~~~~~-------~~~~L~~L~l~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~~~~~~l--- 68 (249)
|++++|.++ ..++..+. ++++|++|++++|.+.+..|..+ +.+++|++|++++|.+.+. |..+..+
T Consensus 68 L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~ 146 (312)
T 1wwl_A 68 LSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQW 146 (312)
T ss_dssp CCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTT
T ss_pred cccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHh
Confidence 566777763 33444443 57888888888888887777665 7788888888888888755 6777776
Q ss_pred --CCCCeEeCCCCcCcCccceEEeccccccccCCCCCcCCCCCccEEEccCccccccCCCcchhhhcccchhcccceEEc
Q 042000 69 --TRLNHIIMPENHLEGLIPILDISDNNISGRLPSCTFSNCSSLVTLDLSYNRINGSIPEWNIAYIYQGKVLSLLSGLDL 146 (249)
Q Consensus 69 --~~L~~L~l~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l 146 (249)
++|++|++++|.+. .++...+..+++|++|++++|.+.+..+. ........+++|++|++
T Consensus 147 ~~~~L~~L~L~~N~l~---------------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~---~~~~~~~~l~~L~~L~L 208 (312)
T 1wwl_A 147 LKPGLKVLSIAQAHSL---------------NFSCEQVRVFPALSTLDLSDNPELGERGL---ISALCPLKFPTLQVLAL 208 (312)
T ss_dssp CCTTCCEEEEESCSCC---------------CCCTTTCCCCSSCCEEECCSCTTCHHHHH---HHHSCTTSCTTCCEEEC
T ss_pred hcCCCcEEEeeCCCCc---------------cchHHHhccCCCCCEEECCCCCcCcchHH---HHHHHhccCCCCCEEEC
Confidence 78888888888776 55544788999999999999986532110 00011134688999999
Q ss_pred ccCeecc---cCCcccCCCCCccEEeCCCCCCccCCc-hhccCCcccCEEEeeCCcccCCcChhhhcCCCccEEEccccc
Q 042000 147 SCNKLIS---HIPPQIGNLTRIETLNLSHNNLTGSIP-STFSNLKHVESLDLSNNKLNGKIPHQLVELKTLAIFSVAYNN 222 (249)
Q Consensus 147 ~~~~~~~---~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~ 222 (249)
++|.++. .....+..+++|+.|++++|.+.+..| ..+..+++|+.|++++|.++ .+|..+. ++|+.|++++|.
T Consensus 209 ~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~ 285 (312)
T 1wwl_A 209 RNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNR 285 (312)
T ss_dssp TTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSC
T ss_pred CCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCC
Confidence 9999863 122334567899999999999996554 45567899999999999998 6666655 899999999999
Q ss_pred cccCCChhhhhhcccccccccCCccc
Q 042000 223 LSGEIPEWTAQFATFNESSYEGNTFL 248 (249)
Q Consensus 223 l~~~~~~~~~~~~~l~~l~l~~n~~~ 248 (249)
+++. |. +..+++|+.+++++|++-
T Consensus 286 l~~~-p~-~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 286 LDRN-PS-PDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp CCSC-CC-TTTSCEEEEEECTTCTTT
T ss_pred CCCC-hh-HhhCCCCCEEeccCCCCC
Confidence 9955 66 889999999999999863
No 53
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=1.6e-26 Score=181.68 Aligned_cols=227 Identities=22% Similarity=0.196 Sum_probs=186.8
Q ss_pred CeEeeccccCCCCCCCCCCCCcccEEEccCccCCCCCCccccCCCCCCeEEccCccccccccccccccCCCCeEeCCCCc
Q 042000 1 SLVLSNNSLNGHMFPRNFNLTNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPENH 80 (249)
Q Consensus 1 ~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 80 (249)
+|++++|.+++..+..+.++++|++|++++|.+.+..+ ++.+++|++|++++|.+.+. ...++|++|++++|.
T Consensus 38 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l-----~~~~~L~~L~l~~n~ 110 (317)
T 3o53_A 38 ELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-----LVGPSIETLHAANNN 110 (317)
T ss_dssp EEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEE-----EECTTCCEEECCSSC
T ss_pred EEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccc-----cCCCCcCEEECCCCc
Confidence 48999999998777889999999999999999975443 88999999999999998732 244899999999998
Q ss_pred CcCc-------cceEEeccccccccCCCCCcCCCCCccEEEccCccccccCCCcchhhhcccchhcccceEEcccCeecc
Q 042000 81 LEGL-------IPILDISDNNISGRLPSCTFSNCSSLVTLDLSYNRINGSIPEWNIAYIYQGKVLSLLSGLDLSCNKLIS 153 (249)
Q Consensus 81 ~~~~-------~~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 153 (249)
+... +..+++++|.+. .++...+..+++|++|++++|.+.+..+... ...+++|++|++++|.++.
T Consensus 111 l~~~~~~~~~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~------~~~l~~L~~L~L~~N~l~~ 183 (317)
T 3o53_A 111 ISRVSCSRGQGKKNIYLANNKIT-MLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL------AASSDTLEHLNLQYNFIYD 183 (317)
T ss_dssp CSEEEECCCSSCEEEECCSSCCC-SGGGBCTGGGSSEEEEECTTSCCCEEEGGGG------GGGTTTCCEEECTTSCCCE
T ss_pred cCCcCccccCCCCEEECCCCCCC-CccchhhhccCCCCEEECCCCCCCcccHHHH------hhccCcCCEEECCCCcCcc
Confidence 8754 567899999988 4444477889999999999999874332211 1236789999999999876
Q ss_pred cCCcccCCCCCccEEeCCCCCCccCCchhccCCcccCEEEeeCCcccCCcChhhhcCCCccEEEccccccc-cCCChhhh
Q 042000 154 HIPPQIGNLTRIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLAIFSVAYNNLS-GEIPEWTA 232 (249)
Q Consensus 154 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~ 232 (249)
.. ....+++|++|++++|.+.+ ++..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.+. +.++..+.
T Consensus 184 ~~--~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~ 259 (317)
T 3o53_A 184 VK--GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFS 259 (317)
T ss_dssp EE--CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHH
T ss_pred cc--cccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHh
Confidence 52 23348999999999999994 5556888999999999999998 57888889999999999999998 66788888
Q ss_pred hhcccccccccCC
Q 042000 233 QFATFNESSYEGN 245 (249)
Q Consensus 233 ~~~~l~~l~l~~n 245 (249)
.++.++.+++.++
T Consensus 260 ~~~~L~~l~l~~~ 272 (317)
T 3o53_A 260 KNQRVQTVAKQTV 272 (317)
T ss_dssp TCHHHHHHHHHHH
T ss_pred ccccceEEECCCc
Confidence 8898988887743
No 54
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.93 E-value=7.4e-25 Score=191.22 Aligned_cols=239 Identities=22% Similarity=0.277 Sum_probs=184.9
Q ss_pred CeEeeccc-cCC-CCCCCCCC-------CCcccEEEccCccCCCCCCc--cccCCCCCCeEEccCccccccccccccccC
Q 042000 1 SLVLSNNS-LNG-HMFPRNFN-------LTNLRWLQLDGNHFVGENPQ--SLSKCSSLEGLYLNNNSLSGKIPRWLGNLT 69 (249)
Q Consensus 1 ~l~l~~~~-l~~-~~~~~~~~-------~~~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~ 69 (249)
+|+|++|. +++ .+|..+.+ +++|++|++++|.+. .+|. .++++++|++|++++|.+. .+| .+..++
T Consensus 519 ~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~ 595 (876)
T 4ecn_A 519 SLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNV 595 (876)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTS
T ss_pred EEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCC
Confidence 47899997 887 67765554 459999999999998 7777 8999999999999999998 777 899999
Q ss_pred CCCeEeCCCCcCcCc----------cceEEeccccccccCCCCCcCCCC--CccEEEccCccccccCCCcchh-------
Q 042000 70 RLNHIIMPENHLEGL----------IPILDISDNNISGRLPSCTFSNCS--SLVTLDLSYNRINGSIPEWNIA------- 130 (249)
Q Consensus 70 ~L~~L~l~~~~~~~~----------~~~l~l~~~~~~~~~~~~~~~~l~--~L~~L~l~~~~~~~~~~~~~~~------- 130 (249)
+|++|++++|.+... +..+++++|.+. .+|. .+..+. +|+.|++++|.+.+.+|.....
T Consensus 596 ~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~-~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~ 673 (876)
T 4ecn_A 596 KLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIPN-IFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGI 673 (876)
T ss_dssp EESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCC-SCCS-CCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCC
T ss_pred cceEEECcCCccccchHHHhhccccCCEEECcCCCCC-cCch-hhhccccCCCCEEECcCCcCCCccccchhhhccccCC
Confidence 999999999987632 567899999988 7776 565554 4999999999998765532100
Q ss_pred -------------hhc--ccchhcccceEEcccCeecccCCcccCC--------CCCccEEeCCCCCCccCCchhcc--C
Q 042000 131 -------------YIY--QGKVLSLLSGLDLSCNKLISHIPPQIGN--------LTRIETLNLSHNNLTGSIPSTFS--N 185 (249)
Q Consensus 131 -------------~~~--~~~~~~~L~~L~l~~~~~~~~~~~~l~~--------~~~L~~L~l~~~~~~~~~~~~~~--~ 185 (249)
.+. ....+++|+.|++++|.+.. .+..+.. +++|+.|++++|.+. .+|..+. .
T Consensus 674 ~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~-ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~ 751 (876)
T 4ecn_A 674 NASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTS-IPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATT 751 (876)
T ss_dssp CEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSC-CCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTT
T ss_pred CcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCc-cChHHhccccccccccCCccEEECCCCCCc-cchHHhhhcc
Confidence 000 01134567888888887764 3333222 238888888888888 6777776 7
Q ss_pred CcccCEEEeeCCcccCCcChhhhcCCCccEEEccc------cccccCCChhhhhhcccccccccCCcc
Q 042000 186 LKHVESLDLSNNKLNGKIPHQLVELKTLAIFSVAY------NNLSGEIPEWTAQFATFNESSYEGNTF 247 (249)
Q Consensus 186 ~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~------n~l~~~~~~~~~~~~~l~~l~l~~n~~ 247 (249)
+++|+.|++++|.+.+ +|..+..+++|+.|++++ |.+.+.+|..+..+++|+.|++++|.+
T Consensus 752 l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L 818 (876)
T 4ecn_A 752 LPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI 818 (876)
T ss_dssp CTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred CCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC
Confidence 8889999999988885 677788888999998876 677778888888889999999988864
No 55
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.93 E-value=8.4e-26 Score=180.17 Aligned_cols=222 Identities=18% Similarity=0.178 Sum_probs=170.9
Q ss_pred CCCCCCcccEEEccCccCCCCCCccccCCCCCCeEEccCccccccccccccccCCCCeEeCCCCcCcCc----------c
Q 042000 16 RNFNLTNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPENHLEGL----------I 85 (249)
Q Consensus 16 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~----------~ 85 (249)
+-..|+.....+.+++.+. .+|..+. ++|++|++++|.+....+..+..+++|++|++++|.+... +
T Consensus 26 ~~~~C~~~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 102 (353)
T 2z80_A 26 ASLSCDRNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSL 102 (353)
T ss_dssp -CCEECTTSEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred cCCCCCCCeEeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCC
Confidence 3345676677899999887 4555443 5899999999999866666899999999999999987643 5
Q ss_pred ceEEeccccccccCCCCCcCCCCCccEEEccCccccccCCCcchhhhcccchhcccceEEcccCe-ecccCCcccCCCCC
Q 042000 86 PILDISDNNISGRLPSCTFSNCSSLVTLDLSYNRINGSIPEWNIAYIYQGKVLSLLSGLDLSCNK-LISHIPPQIGNLTR 164 (249)
Q Consensus 86 ~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~ 164 (249)
+.+++++|.+. .++...+..+++|++|++++|.+. .++.. .....+++|++|++++|. +....+..+..+++
T Consensus 103 ~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~-----~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~ 175 (353)
T 2z80_A 103 EHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYK-TLGET-----SLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTF 175 (353)
T ss_dssp CEEECCSSCCS-SCCHHHHTTCTTCSEEECTTCCCS-SSCSS-----CSCTTCTTCCEEEEEESSSCCEECTTTTTTCCE
T ss_pred CEEECCCCcCC-cCCHhHhCCCccCCEEECCCCCCc-ccCch-----hhhccCCCCcEEECCCCccccccCHHHccCCCC
Confidence 56888888887 566545788889999999998876 33330 012346789999999884 55556677888899
Q ss_pred ccEEeCCCCCCccCCchhccCCcccCEEEeeCCcccCCcChhhhcCCCccEEEccccccccC------------------
Q 042000 165 IETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLAIFSVAYNNLSGE------------------ 226 (249)
Q Consensus 165 L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~------------------ 226 (249)
|++|++++|.+.+..|..+..+++|++|++++|.+.......+..+++|+.|++++|.+++.
T Consensus 176 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~ 255 (353)
T 2z80_A 176 LEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFT 255 (353)
T ss_dssp EEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEE
T ss_pred CCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccc
Confidence 99999999999877788888899999999999998744444455689999999999988753
Q ss_pred -------------CChhhhhhcccccccccCCcc
Q 042000 227 -------------IPEWTAQFATFNESSYEGNTF 247 (249)
Q Consensus 227 -------------~~~~~~~~~~l~~l~l~~n~~ 247 (249)
+|..+..+++|+.+++++|.+
T Consensus 256 L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l 289 (353)
T 2z80_A 256 FRNVKITDESLFQVMKLLNQISGLLELEFSRNQL 289 (353)
T ss_dssp EESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCC
T ss_pred cccccccCcchhhhHHHHhcccCCCEEECCCCCC
Confidence 344567788899999998864
No 56
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.93 E-value=5.8e-25 Score=185.52 Aligned_cols=87 Identities=21% Similarity=0.217 Sum_probs=50.5
Q ss_pred CCCCCccEEeCCCCCCccCCchhccCCcccCEEEeeCCcccCC--cChhhhcCCCccEEEccccccccCCCh-hhhhhcc
Q 042000 160 GNLTRIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGK--IPHQLVELKTLAIFSVAYNNLSGEIPE-WTAQFAT 236 (249)
Q Consensus 160 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~--~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~~ 236 (249)
..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+. .|..+..+++|+.|++++|.+++.+|. .+..+++
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~ 429 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES 429 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence 3455666666666666655566666666666666666666542 234455666666666666666653443 2444555
Q ss_pred cccccccCCc
Q 042000 237 FNESSYEGNT 246 (249)
Q Consensus 237 l~~l~l~~n~ 246 (249)
|+.+++++|.
T Consensus 430 L~~L~l~~n~ 439 (562)
T 3a79_B 430 ILVLNLSSNM 439 (562)
T ss_dssp CCEEECCSSC
T ss_pred CCEEECCCCC
Confidence 5555555553
No 57
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.93 E-value=2e-24 Score=171.81 Aligned_cols=233 Identities=23% Similarity=0.343 Sum_probs=180.3
Q ss_pred CeEeeccccCCCCCCCCCCCCcccEEEccCccCCCCCCccccCCCCCCeEEccCccccccccccccccCCCCeEeCCCCc
Q 042000 1 SLVLSNNSLNGHMFPRNFNLTNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPENH 80 (249)
Q Consensus 1 ~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 80 (249)
+|++++|.+++. ++ +.++++|++|++++|.+.. . .++.++++|++|++++|.+... +. +..+++|++|++++|.
T Consensus 70 ~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~l~~n~ 143 (347)
T 4fmz_A 70 YLNLNGNQITDI-SP-LSNLVKLTNLYIGTNKITD-I-SALQNLTNLRELYLNEDNISDI-SP-LANLTKMYSLNLGANH 143 (347)
T ss_dssp EEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCSEEECTTSCCCCC-GG-GTTCTTCCEEECTTCT
T ss_pred EEEccCCccccc-hh-hhcCCcCCEEEccCCcccC-c-hHHcCCCcCCEEECcCCcccCc-hh-hccCCceeEEECCCCC
Confidence 478999999854 33 8899999999999999874 3 4689999999999999998743 33 8899999999999985
Q ss_pred CcC---------ccceEEeccccccccCCCCCcCCCCCccEEEccCccccccCCCc-------------chhhhcccchh
Q 042000 81 LEG---------LIPILDISDNNISGRLPSCTFSNCSSLVTLDLSYNRINGSIPEW-------------NIAYIYQGKVL 138 (249)
Q Consensus 81 ~~~---------~~~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-------------~~~~~~~~~~~ 138 (249)
... .+..++++++.+. .++. +..+++|++|++++|.+.+..+-. ..........+
T Consensus 144 ~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 220 (347)
T 4fmz_A 144 NLSDLSPLSNMTGLNYLTVTESKVK-DVTP--IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANM 220 (347)
T ss_dssp TCCCCGGGTTCTTCCEEECCSSCCC-CCGG--GGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGC
T ss_pred CcccccchhhCCCCcEEEecCCCcC-Cchh--hccCCCCCEEEccCCcccccccccCCCccceeecccCCCCCCchhhcC
Confidence 332 2556888888876 3332 678889999999998876321100 00000113346
Q ss_pred cccceEEcccCeecccCCcccCCCCCccEEeCCCCCCccCCchhccCCcccCEEEeeCCcccCCcChhhhcCCCccEEEc
Q 042000 139 SLLSGLDLSCNKLISHIPPQIGNLTRIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLAIFSV 218 (249)
Q Consensus 139 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~l 218 (249)
++|++|++++|.+++..+ +..+++|++|++++|.+.+ . ..+..+++|+.|++++|.+.+. ..+..+++|+.|++
T Consensus 221 ~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L 294 (347)
T 4fmz_A 221 TRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFL 294 (347)
T ss_dssp TTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEEC
T ss_pred CcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEEC
Confidence 678888888888765332 7778899999999998884 3 4577889999999999998854 46788999999999
Q ss_pred cccccccCCChhhhhhcccccccccCCccc
Q 042000 219 AYNNLSGEIPEWTAQFATFNESSYEGNTFL 248 (249)
Q Consensus 219 ~~n~l~~~~~~~~~~~~~l~~l~l~~n~~~ 248 (249)
++|.+++..+..+..+++|+.+++++|++.
T Consensus 295 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 324 (347)
T 4fmz_A 295 NNNQLGNEDMEVIGGLTNLTTLFLSQNHIT 324 (347)
T ss_dssp CSSCCCGGGHHHHHTCTTCSEEECCSSSCC
T ss_pred cCCcCCCcChhHhhccccCCEEEccCCccc
Confidence 999998888888999999999999999853
No 58
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=6.3e-25 Score=169.32 Aligned_cols=205 Identities=24% Similarity=0.251 Sum_probs=171.3
Q ss_pred CeEeeccccCCCCCCCCCCCCcccEEEccCccCCCCCCccccCCCCCCeEEccCccccccccccccccCCCCeEeCCCCc
Q 042000 1 SLVLSNNSLNGHMFPRNFNLTNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPENH 80 (249)
Q Consensus 1 ~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 80 (249)
+|++++|.+++..+..+.++++|++|++++|.+....+.+|+++++|++|++++|.+....+..+..+++|++|++++|.
T Consensus 32 ~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 111 (276)
T 2z62_A 32 NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN 111 (276)
T ss_dssp EEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred EEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCC
Confidence 47899999997777789999999999999999987777789999999999999999987777889999999999999998
Q ss_pred CcCccceEEeccccccccCCCCCcCCCCCccEEEccCcccccc-CCCcchhhhcccchhcccceEEcccCeecccCCccc
Q 042000 81 LEGLIPILDISDNNISGRLPSCTFSNCSSLVTLDLSYNRINGS-IPEWNIAYIYQGKVLSLLSGLDLSCNKLISHIPPQI 159 (249)
Q Consensus 81 ~~~~~~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l 159 (249)
+. .++...+..+++|++|++++|.+... +|. ....+++|++|++++|.+++..+..+
T Consensus 112 l~---------------~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~-------~~~~l~~L~~L~Ls~N~l~~~~~~~~ 169 (276)
T 2z62_A 112 LA---------------SLENFPIGHLKTLKELNVAHNLIQSFKLPE-------YFSNLTNLEHLDLSSNKIQSIYCTDL 169 (276)
T ss_dssp CC---------------CSTTCCCTTCTTCCEEECCSSCCCCCCCCG-------GGGGCTTCCEEECCSSCCCEECGGGG
T ss_pred cc---------------ccCchhcccCCCCCEEECcCCccceecCch-------hhccCCCCCEEECCCCCCCcCCHHHh
Confidence 87 44444678899999999999998742 333 12346889999999999887766677
Q ss_pred CCCCCcc----EEeCCCCCCccCCchhccCCcccCEEEeeCCcccCCcChhhhcCCCccEEEccccccccCCC
Q 042000 160 GNLTRIE----TLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLAIFSVAYNNLSGEIP 228 (249)
Q Consensus 160 ~~~~~L~----~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 228 (249)
..+++|+ .+++++|.+.+..+..+ ...+|+.|++++|.+.+..+..+..+++|+.|++++|.+....+
T Consensus 170 ~~l~~L~~l~l~L~ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 170 RVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp HHHHTCTTCCEEEECCSSCCCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred hhhhhccccceeeecCCCcccccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 6666666 89999999985444444 44589999999999997777778899999999999999986654
No 59
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.92 E-value=1.3e-24 Score=167.24 Aligned_cols=186 Identities=26% Similarity=0.328 Sum_probs=82.5
Q ss_pred CCCCCcccEEEccCccCCCCCCccccCCCCCCeEEccCccccccccccccccCCCCeEeCCCCcCcCccceEEecccccc
Q 042000 17 NFNLTNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPENHLEGLIPILDISDNNIS 96 (249)
Q Consensus 17 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~l~~~~~~ 96 (249)
+..+++|++|++++|.+.+. ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.
T Consensus 59 l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-------------- 122 (272)
T 3rfs_A 59 IQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ-------------- 122 (272)
T ss_dssp GGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC--------------
T ss_pred cccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCC--------------
Confidence 44444444444444444321 23444444444444444444333333444444444444444443
Q ss_pred ccCCCCCcCCCCCccEEEccCccccccCCCcchhhhcccchhcccceEEcccCeecccCCcccCCCCCccEEeCCCCCCc
Q 042000 97 GRLPSCTFSNCSSLVTLDLSYNRINGSIPEWNIAYIYQGKVLSLLSGLDLSCNKLISHIPPQIGNLTRIETLNLSHNNLT 176 (249)
Q Consensus 97 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 176 (249)
.++...+..+++|++|++++|.+.+..+. . ...+++|++|++++|.++...+..+..+++|+.|++++|.+.
T Consensus 123 -~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~------~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 194 (272)
T 3rfs_A 123 -SLPDGVFDKLTNLTYLNLAHNQLQSLPKG-V------FDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK 194 (272)
T ss_dssp -CCCTTTTTTCTTCCEEECCSSCCCCCCTT-T------TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred -ccCHHHhccCCCCCEEECCCCccCccCHH-H------hccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCC
Confidence 22222344445555555555544421111 0 012344555555555544433333444455555555555555
Q ss_pred cCCchhccCCcccCEEEeeCCcccCCcChhhhcCCCccEEEccccccccCCChhhhh
Q 042000 177 GSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLAIFSVAYNNLSGEIPEWTAQ 233 (249)
Q Consensus 177 ~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 233 (249)
+..+..+..+++|+.|++++|++. +.+++++.++++.|.+++.+|..++.
T Consensus 195 ~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~l~~~~n~~~g~ip~~~~~ 244 (272)
T 3rfs_A 195 SVPDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGVVRNSAGS 244 (272)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCBC-------CCTTTTHHHHHHHHHTGGGBBCTTSC
T ss_pred ccCHHHHhCCcCCCEEEccCCCcc-------ccCcHHHHHHHHHHhCCCcccCcccc
Confidence 433444444555555555555443 12334444555555555555544443
No 60
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.92 E-value=1.6e-24 Score=183.14 Aligned_cols=232 Identities=23% Similarity=0.309 Sum_probs=163.9
Q ss_pred CeEeeccccCCCCCCCCCCCCcccEEEccCccCCCCCCccccCCCCCCeEEccCccccccccccccccCCCCeEeCCCCc
Q 042000 1 SLVLSNNSLNGHMFPRNFNLTNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPENH 80 (249)
Q Consensus 1 ~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 80 (249)
+|++++|.+++..+.+|.++++|++|++++|.+.+..+.+|+++++|++|++++|.+....+.+|.++++|++|++++|.
T Consensus 32 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 111 (570)
T 2z63_A 32 NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN 111 (570)
T ss_dssp EEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred EEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccc
Confidence 37899999987777889999999999999999887777888999999999999999886667889999999999999987
Q ss_pred CcCc----------cceEEeccccccc-cCCCCCcCCCCCccEEEccCccccccCCCcchhhhcccchhccc----ceEE
Q 042000 81 LEGL----------IPILDISDNNISG-RLPSCTFSNCSSLVTLDLSYNRINGSIPEWNIAYIYQGKVLSLL----SGLD 145 (249)
Q Consensus 81 ~~~~----------~~~l~l~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L----~~L~ 145 (249)
+... ++.+++++|.+.. .+|. .+..+++|++|++++|.+.+..+. ....+.+| +.++
T Consensus 112 l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~-~~~~l~~L~~L~l~~n~l~~~~~~-------~~~~l~~L~~~~~~L~ 183 (570)
T 2z63_A 112 LASLENFPIGHLKTLKELNVAHNLIQSFKLPE-YFSNLTNLEHLDLSSNKIQSIYCT-------DLRVLHQMPLLNLSLD 183 (570)
T ss_dssp CCCSTTCSCTTCTTCCEEECCSSCCCCCCCCG-GGGGCTTCCEEECTTSCCCEECGG-------GGHHHHTCTTCCCEEE
T ss_pred cccCCCccccccccccEEecCCCccceecChh-hhcccCCCCEEeCcCCccceecHH-------Hccchhccchhhhhcc
Confidence 7642 4456777776653 2344 566677777777777766532221 11223444 5677
Q ss_pred cccCeecccCCcccCCCCCccEEeCCCCC---------------------------------------------------
Q 042000 146 LSCNKLISHIPPQIGNLTRIETLNLSHNN--------------------------------------------------- 174 (249)
Q Consensus 146 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~--------------------------------------------------- 174 (249)
+++|.+....+..+... +|+.+++++|.
T Consensus 184 l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l 262 (570)
T 2z63_A 184 LSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF 262 (570)
T ss_dssp CTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEE
T ss_pred cCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhh
Confidence 77777666555555443 56666666551
Q ss_pred -------CccCCchhccCCcccCEEEeeCCcccCCcChhhhcCCCccEEEccccccccCCChhhhhhcccccccccCCc
Q 042000 175 -------LTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLAIFSVAYNNLSGEIPEWTAQFATFNESSYEGNT 246 (249)
Q Consensus 175 -------~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~n~ 246 (249)
+.+..+..+..+++|+++++++|.+. .+|..+..+ +|++|++++|.+. .+|. ..+++|+.+++.+|.
T Consensus 263 ~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~ 336 (570)
T 2z63_A 263 RLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNK 336 (570)
T ss_dssp EEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCB
T ss_pred hhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCc
Confidence 11223444556677778888887776 466666666 7888888888777 5554 366778888877765
No 61
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.92 E-value=1.1e-23 Score=173.93 Aligned_cols=101 Identities=26% Similarity=0.491 Sum_probs=54.2
Q ss_pred cccceEEcccCeecccCCcccCCCCCccEEeCCCCCCccCCchhccCCcccCEEEeeCCcccCCcChhhhcCCCccEEEc
Q 042000 139 SLLSGLDLSCNKLISHIPPQIGNLTRIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLAIFSV 218 (249)
Q Consensus 139 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~l 218 (249)
++|++|++++|.+....+ +..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+.+..+ +..+++|+.|++
T Consensus 243 ~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L 316 (466)
T 1o6v_A 243 TNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTL 316 (466)
T ss_dssp TTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEEC
T ss_pred CCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEEC
Confidence 344444444444433211 4445555555555555553222 4455666666666666654322 556666666666
Q ss_pred cccccccCCChhhhhhcccccccccCCcc
Q 042000 219 AYNNLSGEIPEWTAQFATFNESSYEGNTF 247 (249)
Q Consensus 219 ~~n~l~~~~~~~~~~~~~l~~l~l~~n~~ 247 (249)
++|.+++..| +..+++|+.+++++|..
T Consensus 317 ~~n~l~~~~~--~~~l~~L~~L~l~~n~l 343 (466)
T 1o6v_A 317 YFNNISDISP--VSSLTKLQRLFFYNNKV 343 (466)
T ss_dssp CSSCCSCCGG--GGGCTTCCEEECCSSCC
T ss_pred cCCcCCCchh--hccCccCCEeECCCCcc
Confidence 6666664433 55666777777766653
No 62
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.91 E-value=3.1e-24 Score=168.23 Aligned_cols=204 Identities=21% Similarity=0.202 Sum_probs=163.8
Q ss_pred CeEeeccccCCCCCCCC--CCCCcccEEEccCccCCCCCCccccCC-----CCCCeEEccCccccccccccccccCCCCe
Q 042000 1 SLVLSNNSLNGHMFPRN--FNLTNLRWLQLDGNHFVGENPQSLSKC-----SSLEGLYLNNNSLSGKIPRWLGNLTRLNH 73 (249)
Q Consensus 1 ~l~l~~~~l~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 73 (249)
+|++++|.+++.+|..+ ..+++|++|++++|.+.+. |..++.+ ++|++|++++|.+.+..+..+..+++|++
T Consensus 99 ~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 177 (312)
T 1wwl_A 99 ELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALST 177 (312)
T ss_dssp EEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCE
T ss_pred EEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCE
Confidence 47999999998889887 7999999999999999876 7777766 89999999999999777789999999999
Q ss_pred EeCCCCcCcCccceEEeccccccccCCCCCcCCCCCccEEEccCccccccCCCcchhhhcccchhcccceEEcccCeecc
Q 042000 74 IIMPENHLEGLIPILDISDNNISGRLPSCTFSNCSSLVTLDLSYNRINGSIPEWNIAYIYQGKVLSLLSGLDLSCNKLIS 153 (249)
Q Consensus 74 L~l~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 153 (249)
|++++|.+.+... ......+..+++|++|++++|.+.+ ++.. .......+++|++|++++|.+.+
T Consensus 178 L~Ls~N~l~~~~~-----------~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~---~~~~~~~l~~L~~L~Ls~N~l~~ 242 (312)
T 1wwl_A 178 LDLSDNPELGERG-----------LISALCPLKFPTLQVLALRNAGMET-PSGV---CSALAAARVQLQGLDLSHNSLRD 242 (312)
T ss_dssp EECCSCTTCHHHH-----------HHHHSCTTSCTTCCEEECTTSCCCC-HHHH---HHHHHHTTCCCSEEECTTSCCCS
T ss_pred EECCCCCcCcchH-----------HHHHHHhccCCCCCEEECCCCcCcc-hHHH---HHHHHhcCCCCCEEECCCCcCCc
Confidence 9999998653210 0011133678999999999998862 1110 00111235789999999999877
Q ss_pred cCC-cccCCCCCccEEeCCCCCCccCCchhccCCcccCEEEeeCCcccCCcChhhhcCCCccEEEcccccccc
Q 042000 154 HIP-PQIGNLTRIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLAIFSVAYNNLSG 225 (249)
Q Consensus 154 ~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 225 (249)
..+ ..+..+++|+.|++++|.++ .+|..+. ++|++|++++|++.+. |. +..+++|+.|++++|.+++
T Consensus 243 ~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 243 AAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp SCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred ccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 553 45566899999999999999 6777665 8999999999999865 65 8899999999999999875
No 63
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.91 E-value=1.2e-23 Score=161.80 Aligned_cols=186 Identities=24% Similarity=0.269 Sum_probs=147.6
Q ss_pred CCCCCcccEEEccCccCCCCCCccccCCCCCCeEEccCccccccccccccccCCCCeEeCCCCcCcCccceEEecccccc
Q 042000 17 NFNLTNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPENHLEGLIPILDISDNNIS 96 (249)
Q Consensus 17 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~l~~~~~~ 96 (249)
..++++|+.|+++++.+.. . ..++.+++|++|++++|.+.+ . ..+..+++|++|++++|.+.
T Consensus 37 ~~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~-------------- 98 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQ-------------- 98 (272)
T ss_dssp HHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCC--------------
T ss_pred cccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccC--------------
Confidence 4467889999999988763 2 357889999999999998874 2 47888899999999988877
Q ss_pred ccCCCCCcCCCCCccEEEccCccccccCCCcchhhhcccchhcccceEEcccCeecccCCcccCCCCCccEEeCCCCCCc
Q 042000 97 GRLPSCTFSNCSSLVTLDLSYNRINGSIPEWNIAYIYQGKVLSLLSGLDLSCNKLISHIPPQIGNLTRIETLNLSHNNLT 176 (249)
Q Consensus 97 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 176 (249)
.++...+..+++|++|++++|.+.+..+.. ...+++|++|++++|.++...+..+..+++|+.|++++|.+.
T Consensus 99 -~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-------~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 170 (272)
T 3rfs_A 99 -SLPNGVFDKLTNLKELVLVENQLQSLPDGV-------FDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ 170 (272)
T ss_dssp -CCCTTTTTTCTTCCEEECTTSCCCCCCTTT-------TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred -ccChhHhcCCcCCCEEECCCCcCCccCHHH-------hccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcC
Confidence 555546788899999999999887433321 133677899999999887766666788889999999999988
Q ss_pred cCCchhccCCcccCEEEeeCCcccCCcChhhhcCCCccEEEccccccccCCC
Q 042000 177 GSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLAIFSVAYNNLSGEIP 228 (249)
Q Consensus 177 ~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 228 (249)
+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..|
T Consensus 171 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 222 (272)
T 3rfs_A 171 SLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 222 (272)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred ccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCc
Confidence 6666677888899999999999987777778888999999999998876544
No 64
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.91 E-value=7.2e-24 Score=159.99 Aligned_cols=207 Identities=15% Similarity=0.164 Sum_probs=166.5
Q ss_pred cCCCCCCCCCCCCcccEEEccCccCCCCCCccccCCCCCCeEEccCcc-ccccccccccccCCCCeEeCCC-CcCcCccc
Q 042000 9 LNGHMFPRNFNLTNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNS-LSGKIPRWLGNLTRLNHIIMPE-NHLEGLIP 86 (249)
Q Consensus 9 l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~ 86 (249)
++ .+|. +. +++++|++++|++....+.+|+++++|++|++++|. +....+.+|..+++|++|++++ |.+.
T Consensus 23 l~-~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~---- 94 (239)
T 2xwt_C 23 IQ-RIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT---- 94 (239)
T ss_dssp CS-SCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC----
T ss_pred cc-ccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee----
Confidence 44 4555 43 489999999999987777789999999999999997 8756666899999999999998 8877
Q ss_pred eEEeccccccccCCCCCcCCCCCccEEEccCccccccCCCcchhhhcccchhcccc---eEEcccC-eecccCCcccCCC
Q 042000 87 ILDISDNNISGRLPSCTFSNCSSLVTLDLSYNRINGSIPEWNIAYIYQGKVLSLLS---GLDLSCN-KLISHIPPQIGNL 162 (249)
Q Consensus 87 ~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~---~L~l~~~-~~~~~~~~~l~~~ 162 (249)
.++...+..+++|++|++++|.+.+ +|. ...+.+|+ +|++++| .++...+..+..+
T Consensus 95 -----------~i~~~~f~~l~~L~~L~l~~n~l~~-lp~--------~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l 154 (239)
T 2xwt_C 95 -----------YIDPDALKELPLLKFLGIFNTGLKM-FPD--------LTKVYSTDIFFILEITDNPYMTSIPVNAFQGL 154 (239)
T ss_dssp -----------EECTTSEECCTTCCEEEEEEECCCS-CCC--------CTTCCBCCSEEEEEEESCTTCCEECTTTTTTT
T ss_pred -----------EcCHHHhCCCCCCCEEeCCCCCCcc-ccc--------cccccccccccEEECCCCcchhhcCcccccch
Confidence 5555578889999999999999874 553 12345566 9999999 8877777778899
Q ss_pred CCcc-EEeCCCCCCccCCchhccCCcccCEEEeeCCc-ccCCcChhhhcC-CCccEEEccccccccCCChhhhhhccccc
Q 042000 163 TRIE-TLNLSHNNLTGSIPSTFSNLKHVESLDLSNNK-LNGKIPHQLVEL-KTLAIFSVAYNNLSGEIPEWTAQFATFNE 239 (249)
Q Consensus 163 ~~L~-~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~-~~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~~~~l~~ 239 (249)
++|+ .|++++|.+....+..+.. ++|+.|++++|+ +.+..+..+..+ ++|+.|++++|.++ .+|.. .++.++.
T Consensus 155 ~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~--~~~~L~~ 230 (239)
T 2xwt_C 155 CNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK--GLEHLKE 230 (239)
T ss_dssp BSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCT--TCTTCSE
T ss_pred hcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc-cCChh--HhccCce
Confidence 9999 9999999998433344444 899999999995 886667788889 99999999999998 45543 6788888
Q ss_pred ccccCCcc
Q 042000 240 SSYEGNTF 247 (249)
Q Consensus 240 l~l~~n~~ 247 (249)
+++.++..
T Consensus 231 L~l~~~~~ 238 (239)
T 2xwt_C 231 LIARNTWT 238 (239)
T ss_dssp EECTTC--
T ss_pred eeccCccC
Confidence 98888754
No 65
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.91 E-value=3.8e-23 Score=170.63 Aligned_cols=103 Identities=28% Similarity=0.334 Sum_probs=65.7
Q ss_pred hhcccceEEcccCeecccCCcccCCCCCccEEeCCCCCCccCCchhccCCcccCEEEeeCCcccCCcChhhhcCCCccEE
Q 042000 137 VLSLLSGLDLSCNKLISHIPPQIGNLTRIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLAIF 216 (249)
Q Consensus 137 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L 216 (249)
.+++|++|++++|.+....+ +..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+.+..+ +..+++|+.|
T Consensus 263 ~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L 336 (466)
T 1o6v_A 263 GLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRL 336 (466)
T ss_dssp TCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEE
T ss_pred cCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEe
Confidence 35567777777776654322 5566777777777777764322 5566777777777777765443 5666777777
Q ss_pred EccccccccCCChhhhhhcccccccccCCcc
Q 042000 217 SVAYNNLSGEIPEWTAQFATFNESSYEGNTF 247 (249)
Q Consensus 217 ~l~~n~l~~~~~~~~~~~~~l~~l~l~~n~~ 247 (249)
++++|.+++. ..+..+++|+.+++++|..
T Consensus 337 ~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l 365 (466)
T 1o6v_A 337 FFYNNKVSDV--SSLANLTNINWLSAGHNQI 365 (466)
T ss_dssp ECCSSCCCCC--GGGTTCTTCCEEECCSSCC
T ss_pred ECCCCccCCc--hhhccCCCCCEEeCCCCcc
Confidence 7777776643 3466667777777776653
No 66
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.91 E-value=8.3e-23 Score=156.92 Aligned_cols=200 Identities=24% Similarity=0.299 Sum_probs=170.0
Q ss_pred eEeeccccCCCCCCCCCCCCcccEEEccCccCCCCCCccccCCCCCCeEEccCccccccccccccccCCCCeEeCCCCcC
Q 042000 2 LVLSNNSLNGHMFPRNFNLTNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPENHL 81 (249)
Q Consensus 2 l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 81 (249)
++++++.++ .+|..+. +++++|++++|.+....+.+|+++++|++|++++|.+....+..|..+++|++|++++|.+
T Consensus 21 l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l 97 (270)
T 2o6q_A 21 VDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKL 97 (270)
T ss_dssp EECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCC
T ss_pred EEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcC
Confidence 678888888 5676665 6899999999999877777899999999999999999866556678999999999999988
Q ss_pred cCccceEEeccccccccCCCCCcCCCCCccEEEccCccccccCCCcchhhhcccchhcccceEEcccCeecccCCcccCC
Q 042000 82 EGLIPILDISDNNISGRLPSCTFSNCSSLVTLDLSYNRINGSIPEWNIAYIYQGKVLSLLSGLDLSCNKLISHIPPQIGN 161 (249)
Q Consensus 82 ~~~~~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ 161 (249)
. .++...+..+++|++|++++|.+.+..+.. ...+++|++|++++|.+....+..+..
T Consensus 98 ~---------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-------~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 155 (270)
T 2o6q_A 98 Q---------------ALPIGVFDQLVNLAELRLDRNQLKSLPPRV-------FDSLTKLTYLSLGYNELQSLPKGVFDK 155 (270)
T ss_dssp C---------------CCCTTTTTTCSSCCEEECCSSCCCCCCTTT-------TTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred C---------------cCCHhHcccccCCCEEECCCCccCeeCHHH-------hCcCcCCCEEECCCCcCCccCHhHccC
Confidence 7 555557788999999999999987433321 234788999999999998776677888
Q ss_pred CCCccEEeCCCCCCccCCchhccCCcccCEEEeeCCcccCCcChhhhcCCCccEEEccccccccC
Q 042000 162 LTRIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLAIFSVAYNNLSGE 226 (249)
Q Consensus 162 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 226 (249)
+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.-.
T Consensus 156 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 156 LTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCT 220 (270)
T ss_dssp CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred CcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCC
Confidence 99999999999999976667788999999999999999977777788999999999999987643
No 67
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.91 E-value=5.4e-23 Score=156.29 Aligned_cols=181 Identities=23% Similarity=0.268 Sum_probs=133.3
Q ss_pred CcccEEEccCccCCCCCCccccCCCCCCeEEccCccccccccccccccCCCCeEeCCCCcCcCccceEEeccccccccCC
Q 042000 21 TNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPENHLEGLIPILDISDNNISGRLP 100 (249)
Q Consensus 21 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~l~~~~~~~~~~ 100 (249)
...++++++++.+. .+|..+. +.+++|++++|.+.+..+..|..+++|++|++++|.+. .++
T Consensus 14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~---------------~~~ 75 (251)
T 3m19_A 14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ---------------TLS 75 (251)
T ss_dssp GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC---------------CCC
T ss_pred CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCC---------------ccC
Confidence 34567777777766 3444333 46777777777777666666777777777777777766 444
Q ss_pred CCCcCCCCCccEEEccCccccccCCCcchhhhcccchhcccceEEcccCeecccCCcccCCCCCccEEeCCCCCCccCCc
Q 042000 101 SCTFSNCSSLVTLDLSYNRINGSIPEWNIAYIYQGKVLSLLSGLDLSCNKLISHIPPQIGNLTRIETLNLSHNNLTGSIP 180 (249)
Q Consensus 101 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 180 (249)
...+..+++|++|++++|.+.+..+. . ...+++|++|++++|.++...+..+..+++|+.|++++|.+.+..+
T Consensus 76 ~~~~~~l~~L~~L~L~~n~l~~~~~~-~------~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 148 (251)
T 3m19_A 76 AGVFDDLTELGTLGLANNQLASLPLG-V------FDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPA 148 (251)
T ss_dssp TTTTTTCTTCCEEECTTSCCCCCCTT-T------TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred HhHhccCCcCCEEECCCCcccccChh-H------hcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCH
Confidence 43566777777777777776632222 1 1235677888888887776666667888999999999999996666
Q ss_pred hhccCCcccCEEEeeCCcccCCcChhhhcCCCccEEEccccccccC
Q 042000 181 STFSNLKHVESLDLSNNKLNGKIPHQLVELKTLAIFSVAYNNLSGE 226 (249)
Q Consensus 181 ~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 226 (249)
..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+...
T Consensus 149 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 149 GAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred HHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 6788899999999999999977777888999999999999998755
No 68
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.91 E-value=7.1e-23 Score=158.73 Aligned_cols=195 Identities=24% Similarity=0.257 Sum_probs=162.4
Q ss_pred CeEeeccccCCCCCCCCCCCCcccEEEccCccCCCCCCccccCCCCCCeEEccCccccccccccccccCCCCeEeCCCCc
Q 042000 1 SLVLSNNSLNGHMFPRNFNLTNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPENH 80 (249)
Q Consensus 1 ~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 80 (249)
+++++++.++ .+|..+. ++++.|++++|.+.+..+..|+.+++|++|++++|.+... +.. ..+++|++|++++|.
T Consensus 14 ~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~-~~l~~L~~L~Ls~N~ 88 (290)
T 1p9a_G 14 EVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-QVD-GTLPVLGTLDLSHNQ 88 (290)
T ss_dssp EEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-ECC-SCCTTCCEEECCSSC
T ss_pred EEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc-cCC-CCCCcCCEEECCCCc
Confidence 3678888898 6666665 7899999999999877778899999999999999998843 333 788999999999998
Q ss_pred CcCccceEEeccccccccCCCCCcCCCCCccEEEccCccccccCCCcchhhhcccchhcccceEEcccCeecccCCcccC
Q 042000 81 LEGLIPILDISDNNISGRLPSCTFSNCSSLVTLDLSYNRINGSIPEWNIAYIYQGKVLSLLSGLDLSCNKLISHIPPQIG 160 (249)
Q Consensus 81 ~~~~~~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~ 160 (249)
+. .++. .+..+++|++|++++|.+.+..+. . ...+.+|++|++++|.++...+..+.
T Consensus 89 l~---------------~l~~-~~~~l~~L~~L~l~~N~l~~l~~~-~------~~~l~~L~~L~L~~N~l~~~~~~~~~ 145 (290)
T 1p9a_G 89 LQ---------------SLPL-LGQTLPALTVLDVSFNRLTSLPLG-A------LRGLGELQELYLKGNELKTLPPGLLT 145 (290)
T ss_dssp CS---------------SCCC-CTTTCTTCCEEECCSSCCCCCCSS-T------TTTCTTCCEEECTTSCCCCCCTTTTT
T ss_pred CC---------------cCch-hhccCCCCCEEECCCCcCcccCHH-H------HcCCCCCCEEECCCCCCCccChhhcc
Confidence 87 5565 677889999999999998743322 1 23467899999999999887777788
Q ss_pred CCCCccEEeCCCCCCccCCchhccCCcccCEEEeeCCcccCCcChhhhcCCCccEEEccccccc
Q 042000 161 NLTRIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLAIFSVAYNNLS 224 (249)
Q Consensus 161 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~ 224 (249)
.+++|+.|++++|+++...+..+..+++|+.|++++|.+. .+|..+...++|+.+++++|.+.
T Consensus 146 ~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 146 PTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp TCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred cccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 8999999999999999655567788999999999999998 67777888889999999998775
No 69
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.90 E-value=2.5e-22 Score=164.98 Aligned_cols=196 Identities=26% Similarity=0.278 Sum_probs=127.5
Q ss_pred CeEeeccccCCCCCCCCCCCCcccEEEccCccCCCCCCccccCCCCCCeEEccCccccccccccccccCCCCeEeCCCCc
Q 042000 1 SLVLSNNSLNGHMFPRNFNLTNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPENH 80 (249)
Q Consensus 1 ~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 80 (249)
+|++++|.+++. | .+..+++|++|++++|.+.+. + ++.+++|++|++++|.+.+. + ++.+++|++|++++|.
T Consensus 46 ~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~ 117 (457)
T 3bz5_A 46 SLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNK 117 (457)
T ss_dssp EEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSC
T ss_pred EEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCc
Confidence 378888888853 3 688889999999999888754 3 77888889999988888743 2 7788888888888887
Q ss_pred CcCc-------cceEEeccccccccCCCCCcCCCCCccEEEccCccccccCCCcchhhhcccchhcccceEEcccCeecc
Q 042000 81 LEGL-------IPILDISDNNISGRLPSCTFSNCSSLVTLDLSYNRINGSIPEWNIAYIYQGKVLSLLSGLDLSCNKLIS 153 (249)
Q Consensus 81 ~~~~-------~~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 153 (249)
+... ++.+++++|.+.+ + .+..+++|++|++++|...+.++ ...+++|++|++++|.++.
T Consensus 118 l~~l~~~~l~~L~~L~l~~N~l~~-l---~l~~l~~L~~L~l~~n~~~~~~~---------~~~l~~L~~L~ls~n~l~~ 184 (457)
T 3bz5_A 118 LTKLDVSQNPLLTYLNCARNTLTE-I---DVSHNTQLTELDCHLNKKITKLD---------VTPQTQLTTLDCSFNKITE 184 (457)
T ss_dssp CSCCCCTTCTTCCEEECTTSCCSC-C---CCTTCTTCCEEECTTCSCCCCCC---------CTTCTTCCEEECCSSCCCC
T ss_pred CCeecCCCCCcCCEEECCCCccce-e---ccccCCcCCEEECCCCCcccccc---------cccCCcCCEEECCCCccce
Confidence 7643 5567777777663 3 25566677777777764332221 1234566666666666554
Q ss_pred cCCcccCCCCCccEEeCCCCCCccCCchhccCCcccCEEEeeCCcccCCcChhhhcCCCccEEEccccccccC
Q 042000 154 HIPPQIGNLTRIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLAIFSVAYNNLSGE 226 (249)
Q Consensus 154 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 226 (249)
. + +..+++|+.|++++|.+++. .+..+++|+.|++++|++.+ +| +..+++|+.|++++|.+++.
T Consensus 185 l-~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~ 248 (457)
T 3bz5_A 185 L-D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTEL 248 (457)
T ss_dssp C-C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCC
T ss_pred e-c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCc
Confidence 2 2 45556666666666666532 24555666666666666654 33 45556666666666665543
No 70
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.90 E-value=2.9e-22 Score=152.28 Aligned_cols=176 Identities=23% Similarity=0.274 Sum_probs=151.4
Q ss_pred eEeeccccCCCCCCCCCCCCcccEEEccCccCCCCCCccccCCCCCCeEEccCccccccccccccccCCCCeEeCCCCcC
Q 042000 2 LVLSNNSLNGHMFPRNFNLTNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPENHL 81 (249)
Q Consensus 2 l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 81 (249)
++++++.++ .+|..+. +.++.|++++|.+.+..+.+|+++++|++|++++|.+.+..+..|..+++|++|++++|.+
T Consensus 19 l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 95 (251)
T 3m19_A 19 VDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL 95 (251)
T ss_dssp EECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred EecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcc
Confidence 678888887 6676665 6899999999999988888899999999999999999977777899999999999999998
Q ss_pred cCccceEEeccccccccCCCCCcCCCCCccEEEccCccccccCCCcchhhhcccchhcccceEEcccCeecccCCcccCC
Q 042000 82 EGLIPILDISDNNISGRLPSCTFSNCSSLVTLDLSYNRINGSIPEWNIAYIYQGKVLSLLSGLDLSCNKLISHIPPQIGN 161 (249)
Q Consensus 82 ~~~~~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ 161 (249)
. .++...+..+++|++|++++|.+.+ ++... ...+.+|++|++++|.++...+..+..
T Consensus 96 ~---------------~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~------~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 153 (251)
T 3m19_A 96 A---------------SLPLGVFDHLTQLDKLYLGGNQLKS-LPSGV------FDRLTKLKELRLNTNQLQSIPAGAFDK 153 (251)
T ss_dssp C---------------CCCTTTTTTCTTCCEEECCSSCCCC-CCTTT------TTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred c---------------ccChhHhcccCCCCEEEcCCCcCCC-cChhH------hccCCcccEEECcCCcCCccCHHHcCc
Confidence 8 5555578899999999999999873 33321 134678999999999998877778889
Q ss_pred CCCccEEeCCCCCCccCCchhccCCcccCEEEeeCCcccCC
Q 042000 162 LTRIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGK 202 (249)
Q Consensus 162 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~ 202 (249)
+++|+.|++++|.+.+..+..+..+++|+.+++++|++...
T Consensus 154 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 154 LTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 99999999999999976777888999999999999999754
No 71
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.90 E-value=2e-23 Score=175.67 Aligned_cols=233 Identities=18% Similarity=0.160 Sum_probs=150.9
Q ss_pred EeeccccCCCCCCCCCCCCcccEEEccCccCCCCCCccccCCCCCCeEEccCccccccccccccccCCCCeEeCCCCcCc
Q 042000 3 VLSNNSLNGHMFPRNFNLTNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPENHLE 82 (249)
Q Consensus 3 ~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 82 (249)
+.+++.++ .+|..+. ++|++|++++|.+.+..+.+|+++++|++|++++|.+.+..+.+|..+++|++|++++|.+.
T Consensus 11 ~~~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~ 87 (549)
T 2z81_A 11 DGRSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS 87 (549)
T ss_dssp ECTTSCCS-SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC
T ss_pred ECCCCccc-cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccC
Confidence 56677887 6676665 79999999999998777888999999999999999999777789999999999999999887
Q ss_pred Cc----------cceEEeccccccc-cCCCCCcCCCCCccEEEccCccccccCCCcchhhhcccchhcccceEEcccCee
Q 042000 83 GL----------IPILDISDNNISG-RLPSCTFSNCSSLVTLDLSYNRINGSIPEWNIAYIYQGKVLSLLSGLDLSCNKL 151 (249)
Q Consensus 83 ~~----------~~~l~l~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 151 (249)
.. ++.+++++|.+.+ ..+. .+..+++|++|++++|...+.++... ...+++|++|++++|.+
T Consensus 88 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~~l~~L~~L~L~~n~~~~~~~~~~------~~~l~~L~~L~L~~n~l 160 (549)
T 2z81_A 88 SLSSSWFGPLSSLKYLNLMGNPYQTLGVTS-LFPNLTNLQTLRIGNVETFSEIRRID------FAGLTSLNELEIKALSL 160 (549)
T ss_dssp SCCHHHHTTCTTCCEEECTTCCCSSSCSSC-SCTTCTTCCEEEEEESSSCCEECTTT------TTTCCEEEEEEEEETTC
T ss_pred ccCHHHhccCCCCcEEECCCCcccccchhh-hhhccCCccEEECCCCccccccCHhh------hhcccccCeeeccCCcc
Confidence 53 3346666665542 1222 45556666666666655332332211 12245566666666666
Q ss_pred cccCCcccCCCCCccEEeCCCCCCccCCchh-ccCCcccCEEEeeCCcccCCc---ChhhhcCCCccEEEccccccccCC
Q 042000 152 ISHIPPQIGNLTRIETLNLSHNNLTGSIPST-FSNLKHVESLDLSNNKLNGKI---PHQLVELKTLAIFSVAYNNLSGEI 227 (249)
Q Consensus 152 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~l~l~~n~~~~~~---~~~~~~~~~L~~L~l~~n~l~~~~ 227 (249)
....+..+..+++|++|++++|.+. ..+.. +..+++|+.|++++|.+.+.. ......+++|+.|++++|.+++..
T Consensus 161 ~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 239 (549)
T 2z81_A 161 RNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDES 239 (549)
T ss_dssp CEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHH
T ss_pred cccChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhH
Confidence 5555556666666666666666655 23332 234566666666666665421 112233566666666666665433
Q ss_pred Chh----hhhhcccccccccCCc
Q 042000 228 PEW----TAQFATFNESSYEGNT 246 (249)
Q Consensus 228 ~~~----~~~~~~l~~l~l~~n~ 246 (249)
+.. +..++.++.+++++|.
T Consensus 240 ~~~l~~~~~~~~~L~~l~l~~~~ 262 (549)
T 2z81_A 240 FNELLKLLRYILELSEVEFDDCT 262 (549)
T ss_dssp HHHHHGGGGGCTTCCEEEEESCE
T ss_pred HHHHHHHhhhhcccccccccccc
Confidence 322 2345667777777665
No 72
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.89 E-value=1.3e-22 Score=153.01 Aligned_cols=194 Identities=20% Similarity=0.189 Sum_probs=156.6
Q ss_pred CeEeeccccCCCCCCCCCCCCcccEEEccCcc-CCCCCCccccCCCCCCeEEccC-ccccccccccccccCCCCeEeCCC
Q 042000 1 SLVLSNNSLNGHMFPRNFNLTNLRWLQLDGNH-FVGENPQSLSKCSSLEGLYLNN-NSLSGKIPRWLGNLTRLNHIIMPE 78 (249)
Q Consensus 1 ~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~ 78 (249)
+|++++|.+++..+..|.++++|++|++++|. +....+.+|+++++|++|++++ |.+....+..|..+++|++|++++
T Consensus 35 ~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~ 114 (239)
T 2xwt_C 35 TLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFN 114 (239)
T ss_dssp EEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEE
T ss_pred EEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCC
Confidence 47999999997777789999999999999997 8766677899999999999998 888866667899999999999999
Q ss_pred CcCcCccceEEeccccccccCCCCCcCCCCCcc---EEEccCc-cccccCCCcchhhhcccchhcccc-eEEcccCeecc
Q 042000 79 NHLEGLIPILDISDNNISGRLPSCTFSNCSSLV---TLDLSYN-RINGSIPEWNIAYIYQGKVLSLLS-GLDLSCNKLIS 153 (249)
Q Consensus 79 ~~~~~~~~~l~l~~~~~~~~~~~~~~~~l~~L~---~L~l~~~-~~~~~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~~~ 153 (249)
|.+. .++. +..+++|+ +|++++| .+. .++... ...+.+|+ +|++++|.++.
T Consensus 115 n~l~---------------~lp~--~~~l~~L~~L~~L~l~~N~~l~-~i~~~~------~~~l~~L~~~L~l~~n~l~~ 170 (239)
T 2xwt_C 115 TGLK---------------MFPD--LTKVYSTDIFFILEITDNPYMT-SIPVNA------FQGLCNETLTLKLYNNGFTS 170 (239)
T ss_dssp ECCC---------------SCCC--CTTCCBCCSEEEEEEESCTTCC-EECTTT------TTTTBSSEEEEECCSCCCCE
T ss_pred CCCc---------------cccc--cccccccccccEEECCCCcchh-hcCccc------ccchhcceeEEEcCCCCCcc
Confidence 9877 4443 55666666 9999999 776 333321 23477899 99999999876
Q ss_pred cCCcccCCCCCccEEeCCCCC-CccCCchhccCC-cccCEEEeeCCcccCCcChhhhcCCCccEEEccccc
Q 042000 154 HIPPQIGNLTRIETLNLSHNN-LTGSIPSTFSNL-KHVESLDLSNNKLNGKIPHQLVELKTLAIFSVAYNN 222 (249)
Q Consensus 154 ~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~-~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~ 222 (249)
.....+.. ++|+.|++++|. +.+..+..+..+ ++|+.+++++|++.+ +|.. .+++++.|+++++.
T Consensus 171 i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 171 VQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp ECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEEECTTC-
T ss_pred cCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCceeeccCcc
Confidence 55555555 899999999995 886566788888 999999999999985 4432 67899999998763
No 73
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.89 E-value=4.7e-22 Score=163.42 Aligned_cols=216 Identities=22% Similarity=0.231 Sum_probs=156.7
Q ss_pred CeEeeccccCCCCCCCCCCCCcccEEEccCccCCCCCCccccCCCCCCeEEccCccccccccccccccCCCCeEeCCCCc
Q 042000 1 SLVLSNNSLNGHMFPRNFNLTNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPENH 80 (249)
Q Consensus 1 ~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 80 (249)
+|++++|.+++. + +.++++|++|++++|.+.+. + ++++++|++|++++|.+.+ .+ +..+++|++|++++|.
T Consensus 68 ~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~ 138 (457)
T 3bz5_A 68 KLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNT 138 (457)
T ss_dssp EEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSC
T ss_pred EEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCc
Confidence 478999999863 3 88899999999999998864 3 8889999999999999884 33 7889999999999998
Q ss_pred CcCc-------cceEEeccccccccCCCCCcCCCCCccEEEccCccccccCCCcchhhhcccchhcccceEEcccCeecc
Q 042000 81 LEGL-------IPILDISDNNISGRLPSCTFSNCSSLVTLDLSYNRINGSIPEWNIAYIYQGKVLSLLSGLDLSCNKLIS 153 (249)
Q Consensus 81 ~~~~-------~~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 153 (249)
++.. +..++++.|...+.+ .+..+++|++|++++|.+.+ +| ...+++|+.|++++|.++.
T Consensus 139 l~~l~l~~l~~L~~L~l~~n~~~~~~---~~~~l~~L~~L~ls~n~l~~-l~---------l~~l~~L~~L~l~~N~l~~ 205 (457)
T 3bz5_A 139 LTEIDVSHNTQLTELDCHLNKKITKL---DVTPQTQLTTLDCSFNKITE-LD---------VSQNKLLNRLNCDTNNITK 205 (457)
T ss_dssp CSCCCCTTCTTCCEEECTTCSCCCCC---CCTTCTTCCEEECCSSCCCC-CC---------CTTCTTCCEEECCSSCCSC
T ss_pred cceeccccCCcCCEEECCCCCccccc---ccccCCcCCEEECCCCccce-ec---------cccCCCCCEEECcCCcCCe
Confidence 8753 556788877544344 36678889999999998874 32 1336778888888888766
Q ss_pred cCCcccCCCCCccEEeCCCCCCccCCchhccCCcccCEEEeeCCcccCCcChhhhcCC-------CccEEEccccccccC
Q 042000 154 HIPPQIGNLTRIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELK-------TLAIFSVAYNNLSGE 226 (249)
Q Consensus 154 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~-------~L~~L~l~~n~l~~~ 226 (249)
. .+..+++|+.|++++|.+.+ +| +..+++|+.|++++|.+.+..+..+..+. +|+.+++++|.+.+.
T Consensus 206 ~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~ 279 (457)
T 3bz5_A 206 L---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIY 279 (457)
T ss_dssp C---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCE
T ss_pred e---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCc
Confidence 3 36778888888888888885 55 67788888888888888765443333322 334444444444433
Q ss_pred CChhhhhhcccccccccCCc
Q 042000 227 IPEWTAQFATFNESSYEGNT 246 (249)
Q Consensus 227 ~~~~~~~~~~l~~l~l~~n~ 246 (249)
+| +..+++|+.+++++|+
T Consensus 280 ~~--~~~l~~L~~L~Ls~n~ 297 (457)
T 3bz5_A 280 FQ--AEGCRKIKELDVTHNT 297 (457)
T ss_dssp EE--CTTCTTCCCCCCTTCT
T ss_pred cc--ccccccCCEEECCCCc
Confidence 43 3455666666666664
No 74
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.89 E-value=6.3e-23 Score=160.68 Aligned_cols=206 Identities=20% Similarity=0.251 Sum_probs=142.6
Q ss_pred CCcccEEEccCccCCCCCCccc--cCCCCCCeEEccCcccccccc----ccccccCCCCeEeCCCCcCcCccceEEeccc
Q 042000 20 LTNLRWLQLDGNHFVGENPQSL--SKCSSLEGLYLNNNSLSGKIP----RWLGNLTRLNHIIMPENHLEGLIPILDISDN 93 (249)
Q Consensus 20 ~~~L~~L~l~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~----~~~~~l~~L~~L~l~~~~~~~~~~~l~l~~~ 93 (249)
+++|++|++++|.+.+..|..+ +.+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~----------- 158 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSP----------- 158 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSC-----------
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcc-----------
Confidence 4568888888888877777766 778888888888888764333 33446778888888888776
Q ss_pred cccccCCCCCcCCCCCccEEEccCccccccCCCcchhhhcccchhcccceEEcccCeecccCC--c-ccCCCCCccEEeC
Q 042000 94 NISGRLPSCTFSNCSSLVTLDLSYNRINGSIPEWNIAYIYQGKVLSLLSGLDLSCNKLISHIP--P-QIGNLTRIETLNL 170 (249)
Q Consensus 94 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~-~l~~~~~L~~L~l 170 (249)
.++...+..+++|++|++++|.+.+... .........+++|++|++++|.++.... . .+..+++|++|++
T Consensus 159 ----~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~L 231 (310)
T 4glp_A 159 ----AFSCEQVRAFPALTSLDLSDNPGLGERG---LMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDL 231 (310)
T ss_dssp ----CCCTTSCCCCTTCCEEECCSCTTCHHHH---HHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEEC
T ss_pred ----hhhHHHhccCCCCCEEECCCCCCccchh---hhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEEC
Confidence 4444467778888888888887542100 0000011235678888888888753211 1 2356688888888
Q ss_pred CCCCCccCCchhccCC---cccCEEEeeCCcccCCcChhhhcCCCccEEEccccccccCCChhhhhhcccccccccCCcc
Q 042000 171 SHNNLTGSIPSTFSNL---KHVESLDLSNNKLNGKIPHQLVELKTLAIFSVAYNNLSGEIPEWTAQFATFNESSYEGNTF 247 (249)
Q Consensus 171 ~~~~~~~~~~~~~~~~---~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~n~~ 247 (249)
++|.+.+..|..+..+ ++|++|++++|.+. .+|..+. ++|+.|++++|.+++ +|. +..+++|+.+++++|++
T Consensus 232 s~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~-~~~-~~~l~~L~~L~L~~N~l 306 (310)
T 4glp_A 232 SHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNR-APQ-PDELPEVDNLTLDGNPF 306 (310)
T ss_dssp TTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCS-CCC-TTSCCCCSCEECSSTTT
T ss_pred CCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCC-Cch-hhhCCCccEEECcCCCC
Confidence 8888886656555554 68888888888887 5555443 788888888888884 343 56778888888888886
Q ss_pred c
Q 042000 248 L 248 (249)
Q Consensus 248 ~ 248 (249)
.
T Consensus 307 ~ 307 (310)
T 4glp_A 307 L 307 (310)
T ss_dssp S
T ss_pred C
Confidence 3
No 75
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.89 E-value=2.1e-22 Score=157.43 Aligned_cols=190 Identities=23% Similarity=0.321 Sum_probs=87.2
Q ss_pred CCCcccEEEccCccCCCCCCccccCCCCCCeEEccCccccccccccccccCCCCeEeCCCCcCcCccceEEecccccccc
Q 042000 19 NLTNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPENHLEGLIPILDISDNNISGR 98 (249)
Q Consensus 19 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~l~~~~~~~~ 98 (249)
++++|++|+++++.+.. .+ .++.+++|++|++++|.+.+. +. +..+++|++|++++|.+..
T Consensus 39 ~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n~l~~--------------- 99 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDL-AP-LKNLTKITELELSGNPLKN--------------- 99 (308)
T ss_dssp HHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCCSCCEEECCSCCCSC---------------
T ss_pred HcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCC-hh-HccCCCCCEEEccCCcCCC---------------
Confidence 34555666666555542 22 355555666666666555522 22 5555566666655555441
Q ss_pred CCCCCcCCCCCccEEEccCccccccCCCcchhhhcccchhcccceEEcccCeecccCCcccCCCCCccEEeCCCCCCccC
Q 042000 99 LPSCTFSNCSSLVTLDLSYNRINGSIPEWNIAYIYQGKVLSLLSGLDLSCNKLISHIPPQIGNLTRIETLNLSHNNLTGS 178 (249)
Q Consensus 99 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 178 (249)
++ .+..+++|++|++++|.+.+ ++. ...+++|++|++++|.++...+ +..+++|+.|++++|.+.+
T Consensus 100 ~~--~~~~l~~L~~L~l~~n~l~~-~~~--------l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~- 165 (308)
T 1h6u_A 100 VS--AIAGLQSIKTLDLTSTQITD-VTP--------LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSD- 165 (308)
T ss_dssp CG--GGTTCTTCCEEECTTSCCCC-CGG--------GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-
T ss_pred ch--hhcCCCCCCEEECCCCCCCC-chh--------hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCC-
Confidence 11 23344445555555544431 110 1223444555555544433211 4444455555555554442
Q ss_pred CchhccCCcccCEEEeeCCcccCCcChhhhcCCCccEEEccccccccCCChhhhhhcccccccccCCc
Q 042000 179 IPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLAIFSVAYNNLSGEIPEWTAQFATFNESSYEGNT 246 (249)
Q Consensus 179 ~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~n~ 246 (249)
.+. +..+++|+.|++++|.+.+..+ +..+++|++|++++|.+++.. . +..+++|+.+++++|+
T Consensus 166 ~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~-~-l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 166 LTP-LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS-P-LANTSNLFIVTLTNQT 228 (308)
T ss_dssp CGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG-G-GTTCTTCCEEEEEEEE
T ss_pred Chh-hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc-c-ccCCCCCCEEEccCCe
Confidence 222 4444455555555554443221 444455555555555444222 1 4444455555554444
No 76
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.89 E-value=2.9e-24 Score=171.83 Aligned_cols=243 Identities=23% Similarity=0.224 Sum_probs=174.5
Q ss_pred eEeeccccCCCCCCCCCCCCcccEEEccCccCCCCCC----ccccCCC-CCCeEEccCcccccccccccccc-----CCC
Q 042000 2 LVLSNNSLNGHMFPRNFNLTNLRWLQLDGNHFVGENP----QSLSKCS-SLEGLYLNNNSLSGKIPRWLGNL-----TRL 71 (249)
Q Consensus 2 l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l-----~~L 71 (249)
+++++|.+++.+|..+...++|++|++++|.+....+ .++..++ +|++|++++|.+.+..+..+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 5788899987777766666779999999999886665 6677888 89999999999887667777665 899
Q ss_pred CeEeCCCCcCcC---------------ccceEEeccccccccCCC---CCcCCC-CCccEEEccCccccccCCCcchhhh
Q 042000 72 NHIIMPENHLEG---------------LIPILDISDNNISGRLPS---CTFSNC-SSLVTLDLSYNRINGSIPEWNIAYI 132 (249)
Q Consensus 72 ~~L~l~~~~~~~---------------~~~~l~l~~~~~~~~~~~---~~~~~l-~~L~~L~l~~~~~~~~~~~~~~~~~ 132 (249)
++|++++|.++. .+..+++++|.+...... ..+..+ .+|++|++++|.+...........+
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l 162 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL 162 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence 999999998763 366788888887632221 123343 5899999999987732221111111
Q ss_pred cccchh-cccceEEcccCeecccCCccc----CCC-CCccEEeCCCCCCccC----CchhccC-CcccCEEEeeCCcccC
Q 042000 133 YQGKVL-SLLSGLDLSCNKLISHIPPQI----GNL-TRIETLNLSHNNLTGS----IPSTFSN-LKHVESLDLSNNKLNG 201 (249)
Q Consensus 133 ~~~~~~-~~L~~L~l~~~~~~~~~~~~l----~~~-~~L~~L~l~~~~~~~~----~~~~~~~-~~~L~~l~l~~n~~~~ 201 (249)
... .+|++|++++|.+++..+..+ ..+ ++|++|++++|.+.+. ++..+.. .++|++|++++|.+.+
T Consensus 163 ---~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 239 (362)
T 3goz_A 163 ---AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHG 239 (362)
T ss_dssp ---HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCC
T ss_pred ---hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCc
Confidence 112 479999999998876554433 344 5899999999998853 3445544 4589999999999987
Q ss_pred CcC----hhhhcCCCccEEEccccccccCCCh-------hhhhhcccccccccCCcc
Q 042000 202 KIP----HQLVELKTLAIFSVAYNNLSGEIPE-------WTAQFATFNESSYEGNTF 247 (249)
Q Consensus 202 ~~~----~~~~~~~~L~~L~l~~n~l~~~~~~-------~~~~~~~l~~l~l~~n~~ 247 (249)
..+ ..+..+++|+.|++++|.+.+..+. .+..+++|+.+++++|+.
T Consensus 240 ~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l 296 (362)
T 3goz_A 240 PSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEI 296 (362)
T ss_dssp CCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBC
T ss_pred HHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcC
Confidence 554 3346678999999999985543332 345667888999999875
No 77
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.89 E-value=2.1e-23 Score=163.35 Aligned_cols=204 Identities=20% Similarity=0.181 Sum_probs=158.7
Q ss_pred CeEeeccccCCCCCCCC--CCCCcccEEEccCccCCCCCC----ccccCCCCCCeEEccCccccccccccccccCCCCeE
Q 042000 1 SLVLSNNSLNGHMFPRN--FNLTNLRWLQLDGNHFVGENP----QSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHI 74 (249)
Q Consensus 1 ~l~l~~~~l~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~----~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 74 (249)
+|++++|.+++..|..+ .++++|++|++++|.+.+..+ ..+..+++|++|++++|.+....+..+..+++|++|
T Consensus 95 ~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 174 (310)
T 4glp_A 95 ELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSL 174 (310)
T ss_dssp EEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEE
T ss_pred EEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEE
Confidence 47899999998889888 889999999999999886544 334578999999999999987777889999999999
Q ss_pred eCCCCcCcCccceEEeccccccccCC-CCCcCCCCCccEEEccCccccccCCCcchhhhcccchhcccceEEcccCeecc
Q 042000 75 IMPENHLEGLIPILDISDNNISGRLP-SCTFSNCSSLVTLDLSYNRINGSIPEWNIAYIYQGKVLSLLSGLDLSCNKLIS 153 (249)
Q Consensus 75 ~l~~~~~~~~~~~l~l~~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 153 (249)
++++|.+.... .++ ...+..+++|++|++++|.+. .++.. .......+++|++|++++|.+.+
T Consensus 175 ~Ls~N~l~~~~------------~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~---~~~l~~~l~~L~~L~Ls~N~l~~ 238 (310)
T 4glp_A 175 DLSDNPGLGER------------GLMAALCPHKFPAIQNLALRNTGME-TPTGV---CAALAAAGVQPHSLDLSHNSLRA 238 (310)
T ss_dssp ECCSCTTCHHH------------HHHTTSCTTSSCCCCSCBCCSSCCC-CHHHH---HHHHHHHTCCCSSEECTTSCCCC
T ss_pred ECCCCCCccch------------hhhHHHhhhcCCCCCEEECCCCCCC-chHHH---HHHHHhcCCCCCEEECCCCCCCc
Confidence 99999865210 011 113467889999999999875 11110 00011346789999999999988
Q ss_pred cCCcccCCC---CCccEEeCCCCCCccCCchhccCCcccCEEEeeCCcccCCcChhhhcCCCccEEEcccccccc
Q 042000 154 HIPPQIGNL---TRIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLAIFSVAYNNLSG 225 (249)
Q Consensus 154 ~~~~~l~~~---~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 225 (249)
..|..+..+ ++|++|++++|.++ .+|..+. ++|++|++++|++.+. |. +..+++|+.|++++|.+++
T Consensus 239 ~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 239 TVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred cchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 767666665 69999999999999 5676653 7999999999999853 33 5778999999999999874
No 78
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.88 E-value=1.2e-24 Score=175.55 Aligned_cols=136 Identities=15% Similarity=0.256 Sum_probs=95.7
Q ss_pred CCccEEEccCccccc-cCCCcchhhhcccchhcccceEEcccCeeccc-----CCcccCCCCCccEEeCCCCCCc----c
Q 042000 108 SSLVTLDLSYNRING-SIPEWNIAYIYQGKVLSLLSGLDLSCNKLISH-----IPPQIGNLTRIETLNLSHNNLT----G 177 (249)
Q Consensus 108 ~~L~~L~l~~~~~~~-~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-----~~~~l~~~~~L~~L~l~~~~~~----~ 177 (249)
++|++|++++|.+.. .++. .......+++|++|++++|.+.+. .+..+..+++|+.|++++|.+. .
T Consensus 159 ~~L~~L~L~~n~l~~~~~~~----l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~ 234 (386)
T 2ca6_A 159 PPLRSIICGRNRLENGSMKE----WAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSS 234 (386)
T ss_dssp CCCCEEECCSSCCTGGGHHH----HHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHH
T ss_pred CCCcEEECCCCCCCcHHHHH----HHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHH
Confidence 788888888887651 1111 001122356788888888877531 2236677788888888888885 4
Q ss_pred CCchhccCCcccCEEEeeCCcccCC----cChhhhc--CCCccEEEcccccccc----CCChhh-hhhcccccccccCCc
Q 042000 178 SIPSTFSNLKHVESLDLSNNKLNGK----IPHQLVE--LKTLAIFSVAYNNLSG----EIPEWT-AQFATFNESSYEGNT 246 (249)
Q Consensus 178 ~~~~~~~~~~~L~~l~l~~n~~~~~----~~~~~~~--~~~L~~L~l~~n~l~~----~~~~~~-~~~~~l~~l~l~~n~ 246 (249)
.+|..+..+++|+.|++++|.+.+. ++..+.. +++|++|++++|.+++ .+|..+ ..+++|+.+++++|+
T Consensus 235 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 235 ALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp HHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred HHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 5677777888888888888888754 3455533 7888888888888886 366666 557888888888887
Q ss_pred c
Q 042000 247 F 247 (249)
Q Consensus 247 ~ 247 (249)
+
T Consensus 315 l 315 (386)
T 2ca6_A 315 F 315 (386)
T ss_dssp S
T ss_pred C
Confidence 5
No 79
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.88 E-value=1e-21 Score=153.61 Aligned_cols=187 Identities=19% Similarity=0.300 Sum_probs=155.2
Q ss_pred CeEeeccccCCCCCCCCCCCCcccEEEccCccCCCCCCccccCCCCCCeEEccCccccccccccccccCCCCeEeCCCCc
Q 042000 1 SLVLSNNSLNGHMFPRNFNLTNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPENH 80 (249)
Q Consensus 1 ~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 80 (249)
+|++++|.++. + +.+..+++|++|++++|.+.+.. . +..+++|++|++++|.+.+ . ..+..+++|++|++++|.
T Consensus 45 ~L~l~~~~i~~-l-~~~~~l~~L~~L~L~~n~i~~~~-~-~~~l~~L~~L~L~~n~l~~-~-~~~~~l~~L~~L~l~~n~ 118 (308)
T 1h6u_A 45 TLSAFGTGVTT-I-EGVQYLNNLIGLELKDNQITDLA-P-LKNLTKITELELSGNPLKN-V-SAIAGLQSIKTLDLTSTQ 118 (308)
T ss_dssp EEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCG-G-GTTCCSCCEEECCSCCCSC-C-GGGTTCTTCCEEECTTSC
T ss_pred EEEeeCCCccC-c-hhhhccCCCCEEEccCCcCCCCh-h-HccCCCCCEEEccCCcCCC-c-hhhcCCCCCCEEECCCCC
Confidence 37889999874 3 47889999999999999998543 3 8999999999999999874 3 478899999999999998
Q ss_pred CcCccceEEeccccccccCCCCCcCCCCCccEEEccCccccccCCCcchhhhcccchhcccceEEcccCeecccCCcccC
Q 042000 81 LEGLIPILDISDNNISGRLPSCTFSNCSSLVTLDLSYNRINGSIPEWNIAYIYQGKVLSLLSGLDLSCNKLISHIPPQIG 160 (249)
Q Consensus 81 ~~~~~~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~ 160 (249)
+. .++ .+..+++|++|++++|.+.+. +. ...+++|++|++++|.+++. +. +.
T Consensus 119 l~---------------~~~--~l~~l~~L~~L~l~~n~l~~~-~~--------l~~l~~L~~L~l~~n~l~~~-~~-l~ 170 (308)
T 1h6u_A 119 IT---------------DVT--PLAGLSNLQVLYLDLNQITNI-SP--------LAGLTNLQYLSIGNAQVSDL-TP-LA 170 (308)
T ss_dssp CC---------------CCG--GGTTCTTCCEEECCSSCCCCC-GG--------GGGCTTCCEEECCSSCCCCC-GG-GT
T ss_pred CC---------------Cch--hhcCCCCCCEEECCCCccCcC-cc--------ccCCCCccEEEccCCcCCCC-hh-hc
Confidence 87 333 367889999999999988632 21 24578899999999998763 33 88
Q ss_pred CCCCccEEeCCCCCCccCCchhccCCcccCEEEeeCCcccCCcChhhhcCCCccEEEcccccccc
Q 042000 161 NLTRIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLAIFSVAYNNLSG 225 (249)
Q Consensus 161 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 225 (249)
.+++|+.|++++|.+.+ .+. +..+++|++|++++|.+.+.. .+..+++|+.|++++|.+++
T Consensus 171 ~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 171 NLSKLTTLKADDNKISD-ISP-LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp TCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred CCCCCCEEECCCCccCc-Chh-hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence 89999999999999985 433 778999999999999998654 37889999999999999974
No 80
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.88 E-value=8.1e-21 Score=160.79 Aligned_cols=219 Identities=24% Similarity=0.280 Sum_probs=126.9
Q ss_pred eEeeccccCCCCCCCCCCCCcccEEEccCccCCCCCCccccCCCCCCeEEccCccccccccccccccCCCCeEeCCCCcC
Q 042000 2 LVLSNNSLNGHMFPRNFNLTNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPENHL 81 (249)
Q Consensus 2 l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 81 (249)
|++++|.++ .+|..+. ++|++|++++|.+. .+|. .+++|++|++++|.++ .+|. .+++|++|++++|.+
T Consensus 45 L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l 113 (622)
T 3g06_A 45 LNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPL 113 (622)
T ss_dssp EECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCC
T ss_pred EEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcC
Confidence 566666666 5555554 56666666666665 2332 3556666666666655 3333 445566666655554
Q ss_pred cCc------cceEEeccccccccCCCCCcCCCCCccEEEccCccccccCCCcchhhhcc-----------cchhcccceE
Q 042000 82 EGL------IPILDISDNNISGRLPSCTFSNCSSLVTLDLSYNRINGSIPEWNIAYIYQ-----------GKVLSLLSGL 144 (249)
Q Consensus 82 ~~~------~~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~-----------~~~~~~L~~L 144 (249)
... +..+++++|.+. .++. .+++|++|++++|.+.+ +|... ..+.. ...+++|+.|
T Consensus 114 ~~l~~~l~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~-l~~~~-~~L~~L~L~~N~l~~l~~~~~~L~~L 186 (622)
T 3g06_A 114 THLPALPSGLCKLWIFGNQLT-SLPV----LPPGLQELSVSDNQLAS-LPALP-SELCKLWAYNNQLTSLPMLPSGLQEL 186 (622)
T ss_dssp CCCCCCCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSC-CCCCC-TTCCEEECCSSCCSCCCCCCTTCCEE
T ss_pred CCCCCCCCCcCEEECCCCCCC-cCCC----CCCCCCEEECcCCcCCC-cCCcc-CCCCEEECCCCCCCCCcccCCCCcEE
Confidence 432 334455555444 2332 12444444444444432 11100 00000 0112344555
Q ss_pred EcccCeecccCCccc-----------------CCCCCccEEeCCCCCCccCCchhccCCcccCEEEeeCCcccCCcChhh
Q 042000 145 DLSCNKLISHIPPQI-----------------GNLTRIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQL 207 (249)
Q Consensus 145 ~l~~~~~~~~~~~~l-----------------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~ 207 (249)
++++|.++. .+..+ ..+++|+.|++++|.+++ +| ..+++|+.|++++|.+. .+|.
T Consensus 187 ~Ls~N~l~~-l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~-- 258 (622)
T 3g06_A 187 SVSDNQLAS-LPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM-- 258 (622)
T ss_dssp ECCSSCCSC-CCCCCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC--
T ss_pred ECCCCCCCC-CCCccchhhEEECcCCcccccCCCCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc--
Confidence 555544432 11110 123678888888888874 55 45678899999999887 4554
Q ss_pred hcCCCccEEEccccccccCCChhhhhhcccccccccCCccc
Q 042000 208 VELKTLAIFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFL 248 (249)
Q Consensus 208 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~n~~~ 248 (249)
.+++|+.|++++|.++ .+|..+..+++|+.+++++|++.
T Consensus 259 -~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~ 297 (622)
T 3g06_A 259 -LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS 297 (622)
T ss_dssp -CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCC
T ss_pred -ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCC
Confidence 6788999999999998 77888999999999999999863
No 81
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.88 E-value=3.8e-21 Score=157.86 Aligned_cols=227 Identities=28% Similarity=0.359 Sum_probs=141.2
Q ss_pred CeEeeccccCCCCCCCCCCCCcccEEEccCccCCCCCCccccCCCCCCeEEccCccccccccccccccCCCCeEeCCCCc
Q 042000 1 SLVLSNNSLNGHMFPRNFNLTNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPENH 80 (249)
Q Consensus 1 ~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 80 (249)
+|++++|.+++ +| .+.++++|++|++++|++.+ +|.. ..+|++|++++|.+.+ +| .+..+++|++|++++|.
T Consensus 135 ~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~ 206 (454)
T 1jl5_A 135 YLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNS 206 (454)
T ss_dssp EEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSC
T ss_pred EEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCc
Confidence 36778888874 45 58888888888888888774 4432 3478888888888874 45 68899999999999998
Q ss_pred CcC------ccceEEeccccccccCCCCCcCCCCCccEEEccCccccccCCCcchh--h-------hc-ccchhcccceE
Q 042000 81 LEG------LIPILDISDNNISGRLPSCTFSNCSSLVTLDLSYNRINGSIPEWNIA--Y-------IY-QGKVLSLLSGL 144 (249)
Q Consensus 81 ~~~------~~~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~--~-------~~-~~~~~~~L~~L 144 (249)
+.+ .++.+++++|.+. .++. +..+++|++|++++|.+.+ +|+.... . +. ....+.+|++|
T Consensus 207 l~~l~~~~~~L~~L~l~~n~l~-~lp~--~~~l~~L~~L~l~~N~l~~-l~~~~~~L~~L~l~~N~l~~l~~~~~~L~~L 282 (454)
T 1jl5_A 207 LKKLPDLPLSLESIVAGNNILE-ELPE--LQNLPFLTTIYADNNLLKT-LPDLPPSLEALNVRDNYLTDLPELPQSLTFL 282 (454)
T ss_dssp CSSCCCCCTTCCEEECCSSCCS-SCCC--CTTCTTCCEEECCSSCCSS-CCSCCTTCCEEECCSSCCSCCCCCCTTCCEE
T ss_pred CCcCCCCcCcccEEECcCCcCC-cccc--cCCCCCCCEEECCCCcCCc-ccccccccCEEECCCCcccccCcccCcCCEE
Confidence 876 3667899999887 6663 6788889999998888763 3321000 0 00 00112345555
Q ss_pred EcccCeecc--cCCccc-------------CCC-CCccEEeCCCCCCccCCchhccCCcccCEEEeeCCcccCCcChhhh
Q 042000 145 DLSCNKLIS--HIPPQI-------------GNL-TRIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLV 208 (249)
Q Consensus 145 ~l~~~~~~~--~~~~~l-------------~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~ 208 (249)
++++|.++. ..+..+ ..+ ++|+.|++++|.+.+ +|.. +++|+.|++++|.+. .+|.
T Consensus 283 ~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~--- 354 (454)
T 1jl5_A 283 DVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE--- 354 (454)
T ss_dssp ECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---
T ss_pred ECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---
Confidence 555555443 111111 111 356666666666663 3332 467788888888777 3454
Q ss_pred cCCCccEEEcccccccc--CCChhhhhh-------------cccccccccCCcc
Q 042000 209 ELKTLAIFSVAYNNLSG--EIPEWTAQF-------------ATFNESSYEGNTF 247 (249)
Q Consensus 209 ~~~~L~~L~l~~n~l~~--~~~~~~~~~-------------~~l~~l~l~~n~~ 247 (249)
.+++|++|++++|.+++ .+|..++.+ ++|+.+++++|++
T Consensus 355 ~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l 408 (454)
T 1jl5_A 355 LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPL 408 (454)
T ss_dssp CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC----------------------
T ss_pred hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcC
Confidence 46788888888888887 677777666 7788888888875
No 82
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.87 E-value=2.8e-22 Score=164.64 Aligned_cols=196 Identities=23% Similarity=0.336 Sum_probs=110.1
Q ss_pred eEeeccccCCCCCCCCCCCCcccEEEccCccCCCCCCccccCC---------------------------------CCCC
Q 042000 2 LVLSNNSLNGHMFPRNFNLTNLRWLQLDGNHFVGENPQSLSKC---------------------------------SSLE 48 (249)
Q Consensus 2 l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l---------------------------------~~L~ 48 (249)
+++++|.+ +.+|++++++++|++|++++|.+.+..|..++++ ++|+
T Consensus 16 L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~~~~~L~ 94 (454)
T 1jl5_A 16 PLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPELPPHLE 94 (454)
T ss_dssp -------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCSCCTTCS
T ss_pred hhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCCCcCCCC
Confidence 45566666 4666666666666666666555554445444433 3555
Q ss_pred eEEccCccccccccccccccCCCCeEeCCCCcCcC------ccceEEeccccccccCCCCCcCCCCCccEEEccCccccc
Q 042000 49 GLYLNNNSLSGKIPRWLGNLTRLNHIIMPENHLEG------LIPILDISDNNISGRLPSCTFSNCSSLVTLDLSYNRING 122 (249)
Q Consensus 49 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~------~~~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 122 (249)
+|++++|.+.+ +|.. ..+|++|++++|.+.. .++.+++++|.+. .++ .+..+++|++|++++|.+.+
T Consensus 95 ~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~-~lp--~~~~l~~L~~L~l~~N~l~~ 167 (454)
T 1jl5_A 95 SLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLE-KLP--ELQNSSFLKIIDVDNNSLKK 167 (454)
T ss_dssp EEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCS-SCC--CCTTCTTCCEEECCSSCCSC
T ss_pred EEEccCCcCCc-cccc---cCCCcEEECCCCccCcccCCCCCCCEEECcCCCCC-CCc--ccCCCCCCCEEECCCCcCcc
Confidence 66666555553 3322 2577777777776654 3566888888777 465 47788888888888888763
Q ss_pred cCCCcchhhhcccchhcccceEEcccCeecccCCcccCCCCCccEEeCCCCCCccCCchhccCCcccCEEEeeCCcccCC
Q 042000 123 SIPEWNIAYIYQGKVLSLLSGLDLSCNKLISHIPPQIGNLTRIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGK 202 (249)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~ 202 (249)
+|.. +.+|++|++++|.++. .+ .+..+++|+.|++++|.+.+ +|.. .++|++|++++|.+. .
T Consensus 168 -lp~~----------~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~ 229 (454)
T 1jl5_A 168 -LPDL----------PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-E 229 (454)
T ss_dssp -CCCC----------CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-S
T ss_pred -cCCC----------cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-c
Confidence 4432 2467778888777655 33 46667777777777777663 3322 235666666666665 3
Q ss_pred cChhhhcCCCccEEEccccccc
Q 042000 203 IPHQLVELKTLAIFSVAYNNLS 224 (249)
Q Consensus 203 ~~~~~~~~~~L~~L~l~~n~l~ 224 (249)
+|. +..+++|+.|++++|.++
T Consensus 230 lp~-~~~l~~L~~L~l~~N~l~ 250 (454)
T 1jl5_A 230 LPE-LQNLPFLTTIYADNNLLK 250 (454)
T ss_dssp CCC-CTTCTTCCEEECCSSCCS
T ss_pred ccc-cCCCCCCCEEECCCCcCC
Confidence 442 555666666666666555
No 83
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.87 E-value=5.4e-23 Score=162.80 Aligned_cols=220 Identities=19% Similarity=0.212 Sum_probs=125.2
Q ss_pred eEeeccccCCCCCCCCCCCCcccEEEccCccCCCC-CCccccCCCCCCeEEccCccccccccccccccCCCCeEeCCCC-
Q 042000 2 LVLSNNSLNGHMFPRNFNLTNLRWLQLDGNHFVGE-NPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPEN- 79 (249)
Q Consensus 2 l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~- 79 (249)
+++++|.+.+.. +.++++++|++|++++|.+.+. .+..+..+++|++|++++|.+.+..+..+..+++|++|++++|
T Consensus 75 L~l~~n~l~~~~-~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~ 153 (336)
T 2ast_B 75 FRCPRSFMDQPL-AEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCS 153 (336)
T ss_dssp EECTTCEECSCC-CSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCB
T ss_pred EEcCCccccccc-hhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCC
Confidence 456666666433 3355667777777777766533 4445666677777777777666555666666777777777766
Q ss_pred cCcCccceEEeccccccccCCCCCcCCCCCccEEEccCc-cccccCCCcchhhhcccchhc-ccceEEcccCe--ec-cc
Q 042000 80 HLEGLIPILDISDNNISGRLPSCTFSNCSSLVTLDLSYN-RINGSIPEWNIAYIYQGKVLS-LLSGLDLSCNK--LI-SH 154 (249)
Q Consensus 80 ~~~~~~~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~--~~-~~ 154 (249)
.++.. .++. .+..+++|++|++++| .+.+.. .......++ +|++|++++|. ++ ..
T Consensus 154 ~l~~~-------------~l~~-~~~~~~~L~~L~l~~~~~l~~~~------~~~~~~~l~~~L~~L~l~~~~~~~~~~~ 213 (336)
T 2ast_B 154 GFSEF-------------ALQT-LLSSCSRLDELNLSWCFDFTEKH------VQVAVAHVSETITQLNLSGYRKNLQKSD 213 (336)
T ss_dssp SCCHH-------------HHHH-HHHHCTTCCEEECCCCTTCCHHH------HHHHHHHSCTTCCEEECCSCGGGSCHHH
T ss_pred CCCHH-------------HHHH-HHhcCCCCCEEcCCCCCCcChHH------HHHHHHhcccCCCEEEeCCCcccCCHHH
Confidence 34321 1111 3455667777777777 554210 001112345 67777777773 32 22
Q ss_pred CCcccCCCCCccEEeCCCCC-CccCCchhccCCcccCEEEeeCCc-ccCCcChhhhcCCCccEEEccccccccCCChhhh
Q 042000 155 IPPQIGNLTRIETLNLSHNN-LTGSIPSTFSNLKHVESLDLSNNK-LNGKIPHQLVELKTLAIFSVAYNNLSGEIPEWTA 232 (249)
Q Consensus 155 ~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~l~l~~n~-~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 232 (249)
.+..+..+++|+.|++++|. +++..+..+..+++|++|++++|. +.......+..+++|+.|++++| ++... +.
T Consensus 214 l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~---~~ 289 (336)
T 2ast_B 214 LSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGT---LQ 289 (336)
T ss_dssp HHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTC---HH
T ss_pred HHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHH---HH
Confidence 33444556777777777777 554555566667777777777773 33233335666777777777777 33222 22
Q ss_pred hh-cccccccccCCc
Q 042000 233 QF-ATFNESSYEGNT 246 (249)
Q Consensus 233 ~~-~~l~~l~l~~n~ 246 (249)
.+ ..++.+++++|.
T Consensus 290 ~l~~~l~~L~l~~n~ 304 (336)
T 2ast_B 290 LLKEALPHLQINCSH 304 (336)
T ss_dssp HHHHHSTTSEESCCC
T ss_pred HHHhhCcceEEeccc
Confidence 22 234455555554
No 84
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.86 E-value=6.1e-21 Score=140.90 Aligned_cols=161 Identities=26% Similarity=0.304 Sum_probs=96.7
Q ss_pred CCCeEEccCccccccccccccccCCCCeEeCCCCcCcCccceEEeccccccccCCCCCcCCCCCccEEEccCccccccCC
Q 042000 46 SLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPENHLEGLIPILDISDNNISGRLPSCTFSNCSSLVTLDLSYNRINGSIP 125 (249)
Q Consensus 46 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 125 (249)
+|++|++++|.+....+..+..+++|++|++++|.+. .++...+..+++|++|++++|.+.+ ++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~---------------~~~~~~~~~l~~L~~L~Ls~n~l~~-~~ 92 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ---------------SLPNGVFNKLTSLTYLNLSTNQLQS-LP 92 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC---------------CCCTTTTTTCTTCCEEECCSSCCCC-CC
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC---------------ccChhhcCCCCCcCEEECCCCcCCc-cC
Confidence 4555555555554333334445555555555555444 3333234455555555555555442 11
Q ss_pred CcchhhhcccchhcccceEEcccCeecccCCcccCCCCCccEEeCCCCCCccCCchhccCCcccCEEEeeCCcccCCcCh
Q 042000 126 EWNIAYIYQGKVLSLLSGLDLSCNKLISHIPPQIGNLTRIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPH 205 (249)
Q Consensus 126 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~ 205 (249)
... ...+++|++|++++|.++...+..+..+++|+.|++++|.+.+..+..+..+++|+.+++++|++.
T Consensus 93 ~~~------~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~----- 161 (208)
T 2o6s_A 93 NGV------FDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD----- 161 (208)
T ss_dssp TTT------TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC-----
T ss_pred HhH------hcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee-----
Confidence 110 112445666666666655545555677788888888888887655556777888888888888775
Q ss_pred hhhcCCCccEEEccccccccCCChhhhhhc
Q 042000 206 QLVELKTLAIFSVAYNNLSGEIPEWTAQFA 235 (249)
Q Consensus 206 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~ 235 (249)
+.+++++.|+++.|.+++.+|..++.++
T Consensus 162 --~~~~~l~~L~~~~n~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 162 --CTCPGIRYLSEWINKHSGVVRNSAGSVA 189 (208)
T ss_dssp --CCTTTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred --cCCCCHHHHHHHHHhCCceeeccCcccc
Confidence 3456788888888888888887776554
No 85
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.86 E-value=6.3e-23 Score=162.43 Aligned_cols=219 Identities=17% Similarity=0.152 Sum_probs=166.9
Q ss_pred eEeeccccCCCCCCCCCCC--CcccEEEccCccCCCCCCccccCCCCCCeEEccCcccccc-ccccccccCCCCeEeCCC
Q 042000 2 LVLSNNSLNGHMFPRNFNL--TNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGK-IPRWLGNLTRLNHIIMPE 78 (249)
Q Consensus 2 l~l~~~~l~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~ 78 (249)
++++++.+. +..+..+ ++++.++++++.+.+..+. +..+++|++|++++|.+.+. .+..+..+++|++|++++
T Consensus 52 l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~ 127 (336)
T 2ast_B 52 LDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEG 127 (336)
T ss_dssp EECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTT
T ss_pred eccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcC
Confidence 566666665 3444555 8899999999988866554 55789999999999988754 677888999999999999
Q ss_pred CcCcCccceEEeccccccccCCCCCcCCCCCccEEEccCc-cccccCCCcchhhhcccchhcccceEEcccC-eeccc-C
Q 042000 79 NHLEGLIPILDISDNNISGRLPSCTFSNCSSLVTLDLSYN-RINGSIPEWNIAYIYQGKVLSLLSGLDLSCN-KLISH-I 155 (249)
Q Consensus 79 ~~~~~~~~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~-~ 155 (249)
|.+... .+. .+..+++|++|++++| .+.+. . .......+++|++|++++| .+++. .
T Consensus 128 ~~l~~~--------------~~~-~l~~~~~L~~L~L~~~~~l~~~----~--l~~~~~~~~~L~~L~l~~~~~l~~~~~ 186 (336)
T 2ast_B 128 LRLSDP--------------IVN-TLAKNSNLVRLNLSGCSGFSEF----A--LQTLLSSCSRLDELNLSWCFDFTEKHV 186 (336)
T ss_dssp CBCCHH--------------HHH-HHTTCTTCSEEECTTCBSCCHH----H--HHHHHHHCTTCCEEECCCCTTCCHHHH
T ss_pred cccCHH--------------HHH-HHhcCCCCCEEECCCCCCCCHH----H--HHHHHhcCCCCCEEcCCCCCCcChHHH
Confidence 876632 122 5667899999999999 45421 0 1111234788999999999 77653 3
Q ss_pred CcccCCCC-CccEEeCCCCC--Cc-cCCchhccCCcccCEEEeeCCc-ccCCcChhhhcCCCccEEEccccc-cccCCCh
Q 042000 156 PPQIGNLT-RIETLNLSHNN--LT-GSIPSTFSNLKHVESLDLSNNK-LNGKIPHQLVELKTLAIFSVAYNN-LSGEIPE 229 (249)
Q Consensus 156 ~~~l~~~~-~L~~L~l~~~~--~~-~~~~~~~~~~~~L~~l~l~~n~-~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~ 229 (249)
+..+..++ +|++|++++|. ++ +.++..+..+++|++|++++|. +++..+..+..+++|++|++++|. +......
T Consensus 187 ~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 266 (336)
T 2ast_B 187 QVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLL 266 (336)
T ss_dssp HHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGG
T ss_pred HHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHH
Confidence 55567788 99999999994 54 3466777789999999999998 776778888999999999999995 4433334
Q ss_pred hhhhhcccccccccCC
Q 042000 230 WTAQFATFNESSYEGN 245 (249)
Q Consensus 230 ~~~~~~~l~~l~l~~n 245 (249)
.+..+++|+.+++++|
T Consensus 267 ~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 267 ELGEIPTLKTLQVFGI 282 (336)
T ss_dssp GGGGCTTCCEEECTTS
T ss_pred HHhcCCCCCEEeccCc
Confidence 6788999999999987
No 86
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.86 E-value=5.7e-24 Score=175.33 Aligned_cols=245 Identities=20% Similarity=0.193 Sum_probs=126.5
Q ss_pred eEeeccccCC----CCCCCCCCCCcccEEEccCccCCCCCCcccc-----CCCCCCeEEccCcccccc----cccccccc
Q 042000 2 LVLSNNSLNG----HMFPRNFNLTNLRWLQLDGNHFVGENPQSLS-----KCSSLEGLYLNNNSLSGK----IPRWLGNL 68 (249)
Q Consensus 2 l~l~~~~l~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-----~l~~L~~L~l~~~~~~~~----~~~~~~~l 68 (249)
|++++|.++. .++..+.++++|++|++++|.+....+..+. ..++|++|++++|.++.. ++..+..+
T Consensus 90 L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~ 169 (461)
T 1z7x_W 90 LSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAK 169 (461)
T ss_dssp EECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHC
T ss_pred EEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhC
Confidence 4555555552 2345555566666666666655432222221 133455555555554432 23334445
Q ss_pred CCCCeEeCCCCcCcC---------------ccceEEecccccccc----CCCCCcCCCCCccEEEccCccccccCCC---
Q 042000 69 TRLNHIIMPENHLEG---------------LIPILDISDNNISGR----LPSCTFSNCSSLVTLDLSYNRINGSIPE--- 126 (249)
Q Consensus 69 ~~L~~L~l~~~~~~~---------------~~~~l~l~~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~~--- 126 (249)
++|++|++++|.+.. .++.+++++|.+... ++. .+..+++|++|++++|.+......
T Consensus 170 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~-~l~~~~~L~~L~Ls~n~l~~~~~~~l~ 248 (461)
T 1z7x_W 170 PDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCG-IVASKASLRELALGSNKLGDVGMAELC 248 (461)
T ss_dssp TTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHH-HHHHCTTCCEEECCSSBCHHHHHHHHH
T ss_pred CCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHH-HHHhCCCccEEeccCCcCChHHHHHHH
Confidence 666666666665432 244455555555421 121 233445566666655554321000
Q ss_pred ----------------------cchh-hhcccchhcccceEEcccCeecccCCcccC-----CCCCccEEeCCCCCCccC
Q 042000 127 ----------------------WNIA-YIYQGKVLSLLSGLDLSCNKLISHIPPQIG-----NLTRIETLNLSHNNLTGS 178 (249)
Q Consensus 127 ----------------------~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~-----~~~~L~~L~l~~~~~~~~ 178 (249)
.... .......+++|++|++++|.+.+..+..+. ..++|+.|++++|.+.+.
T Consensus 249 ~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~ 328 (461)
T 1z7x_W 249 PGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAA 328 (461)
T ss_dssp HHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGG
T ss_pred HHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchH
Confidence 0000 000011134455555555554332221111 124666666666666533
Q ss_pred ----CchhccCCcccCEEEeeCCcccCCcChhhhc-----CCCccEEEcccccccc----CCChhhhhhcccccccccCC
Q 042000 179 ----IPSTFSNLKHVESLDLSNNKLNGKIPHQLVE-----LKTLAIFSVAYNNLSG----EIPEWTAQFATFNESSYEGN 245 (249)
Q Consensus 179 ----~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~-----~~~L~~L~l~~n~l~~----~~~~~~~~~~~l~~l~l~~n 245 (249)
++.++..+++|++|++++|.+.+..+..+.. .++|++|++++|.+++ .+|..+..+++|+.+++++|
T Consensus 329 ~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N 408 (461)
T 1z7x_W 329 CCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNN 408 (461)
T ss_dssp GHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSS
T ss_pred HHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCC
Confidence 3445556677888888888776544444432 5688888888888775 56677777888888888888
Q ss_pred cc
Q 042000 246 TF 247 (249)
Q Consensus 246 ~~ 247 (249)
++
T Consensus 409 ~i 410 (461)
T 1z7x_W 409 CL 410 (461)
T ss_dssp SC
T ss_pred CC
Confidence 64
No 87
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.85 E-value=2.8e-23 Score=171.20 Aligned_cols=226 Identities=14% Similarity=0.101 Sum_probs=136.2
Q ss_pred CCCcccEEEccCccCCCCCCcccc-----CCCCCCeEEccCcccccc----ccccccccCCCCeEeCCCCcCcC------
Q 042000 19 NLTNLRWLQLDGNHFVGENPQSLS-----KCSSLEGLYLNNNSLSGK----IPRWLGNLTRLNHIIMPENHLEG------ 83 (249)
Q Consensus 19 ~~~~L~~L~l~~~~~~~~~~~~~~-----~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~------ 83 (249)
.+++|++|++++|.+....+..+. ..++|++|++++|.++.. ++..+..+++|++|++++|.+..
T Consensus 168 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l 247 (461)
T 1z7x_W 168 AKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAEL 247 (461)
T ss_dssp HCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHH
T ss_pred hCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHH
Confidence 344555555555544322222221 133555555555554421 24445555666666666665432
Q ss_pred ---------ccceEEecccccccc----CCCCCcCCCCCccEEEccCccccccCCCcchhhhcccchhcccceEEcccCe
Q 042000 84 ---------LIPILDISDNNISGR----LPSCTFSNCSSLVTLDLSYNRINGSIPEWNIAYIYQGKVLSLLSGLDLSCNK 150 (249)
Q Consensus 84 ---------~~~~l~l~~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 150 (249)
.+..+++++|.+... ++. .+..+++|++|++++|.+....+....... ....++|++|++++|.
T Consensus 248 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~-~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l--~~~~~~L~~L~L~~n~ 324 (461)
T 1z7x_W 248 CPGLLHPSSRLRTLWIWECGITAKGCGDLCR-VLRAKESLKELSLAGNELGDEGARLLCETL--LEPGCQLESLWVKSCS 324 (461)
T ss_dssp HHHHTSTTCCCCEEECTTSCCCHHHHHHHHH-HHHHCTTCCEEECTTCCCHHHHHHHHHHHH--TSTTCCCCEEECTTSC
T ss_pred HHHHhcCCCCceEEECcCCCCCHHHHHHHHH-HHhhCCCcceEECCCCCCchHHHHHHHHHh--ccCCccceeeEcCCCC
Confidence 244566666655421 222 344567777777777766422111000000 0123589999999999
Q ss_pred eccc----CCcccCCCCCccEEeCCCCCCccCCchhcc-----CCcccCEEEeeCCcccC----CcChhhhcCCCccEEE
Q 042000 151 LISH----IPPQIGNLTRIETLNLSHNNLTGSIPSTFS-----NLKHVESLDLSNNKLNG----KIPHQLVELKTLAIFS 217 (249)
Q Consensus 151 ~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~l~l~~n~~~~----~~~~~~~~~~~L~~L~ 217 (249)
+++. .+..+..+++|++|++++|.+.+..+..+. ..++|++|++++|.+++ .++..+..+++|++|+
T Consensus 325 l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~ 404 (461)
T 1z7x_W 325 FTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELD 404 (461)
T ss_dssp CBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEE
T ss_pred CchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEE
Confidence 8764 344556679999999999998854443332 26799999999999986 6788888999999999
Q ss_pred ccccccccCCChhhh-h----hcccccccccCCcc
Q 042000 218 VAYNNLSGEIPEWTA-Q----FATFNESSYEGNTF 247 (249)
Q Consensus 218 l~~n~l~~~~~~~~~-~----~~~l~~l~l~~n~~ 247 (249)
+++|.+++.....+. . ..+++.+.+.++.+
T Consensus 405 l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~ 439 (461)
T 1z7x_W 405 LSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYW 439 (461)
T ss_dssp CCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCC
T ss_pred CCCCCCCHHHHHHHHHHhccCCcchhheeeccccc
Confidence 999999865333332 1 23567776666543
No 88
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.85 E-value=3.9e-20 Score=154.93 Aligned_cols=185 Identities=25% Similarity=0.335 Sum_probs=141.9
Q ss_pred eEeeccccCCCCCCCCCCCCcccEEEccCccCCCCCCccccCCCCCCeEEccCccccccccccccccCCCCeEeCCCCcC
Q 042000 2 LVLSNNSLNGHMFPRNFNLTNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPENHL 81 (249)
Q Consensus 2 l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 81 (249)
|++++|.+++ +|..+. ++|++|++++|.+. .+| ..+++|++|++++|.+++ +|. +.. +|++|++++|.+
T Consensus 64 L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l 132 (571)
T 3cvr_A 64 LQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQL 132 (571)
T ss_dssp EECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCC
T ss_pred EEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcC
Confidence 6788888875 666553 67888888888887 444 446788888888888774 555 544 788888888777
Q ss_pred cCccceEEeccccccccCCCCCcCCCCCccEEEccCccccccCCCcchhhhcccchhcccceEEcccCeecccCCcccCC
Q 042000 82 EGLIPILDISDNNISGRLPSCTFSNCSSLVTLDLSYNRINGSIPEWNIAYIYQGKVLSLLSGLDLSCNKLISHIPPQIGN 161 (249)
Q Consensus 82 ~~~~~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ 161 (249)
+ .++. .+++|++|++++|.+.+ +|. .+++|++|++++|.++. .+. +.
T Consensus 133 ~---------------~lp~----~l~~L~~L~Ls~N~l~~-lp~----------~l~~L~~L~Ls~N~L~~-lp~-l~- 179 (571)
T 3cvr_A 133 T---------------MLPE----LPALLEYINADNNQLTM-LPE----------LPTSLEVLSVRNNQLTF-LPE-LP- 179 (571)
T ss_dssp S---------------CCCC----CCTTCCEEECCSSCCSC-CCC----------CCTTCCEEECCSSCCSC-CCC-CC-
T ss_pred C---------------CCCC----cCccccEEeCCCCccCc-CCC----------cCCCcCEEECCCCCCCC-cch-hh-
Confidence 6 4444 56889999999999874 443 25789999999999876 555 55
Q ss_pred CCCccEEeCCCCCCccCCchhccCCccc-------CEEEeeCCcccCCcChhhhcCCCccEEEccccccccCCChhhhhh
Q 042000 162 LTRIETLNLSHNNLTGSIPSTFSNLKHV-------ESLDLSNNKLNGKIPHQLVELKTLAIFSVAYNNLSGEIPEWTAQF 234 (249)
Q Consensus 162 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L-------~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~ 234 (249)
++|+.|++++|.++ .+|. +.. +| +.|++++|.++ .+|..+..+++|+.|++++|.+++.+|..+..+
T Consensus 180 -~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 180 -ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp -TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred -CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 89999999999998 5666 543 67 99999999998 578778889999999999999998888888766
Q ss_pred cc
Q 042000 235 AT 236 (249)
Q Consensus 235 ~~ 236 (249)
+.
T Consensus 254 ~~ 255 (571)
T 3cvr_A 254 TA 255 (571)
T ss_dssp HH
T ss_pred hc
Confidence 44
No 89
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.85 E-value=3.1e-20 Score=148.31 Aligned_cols=177 Identities=24% Similarity=0.290 Sum_probs=102.4
Q ss_pred cEEEccCccCCCCCCccccCCCCCCeEEccCcccccccccccc-ccCCCCeEeCCCCcCcCccceEEeccccccccCCCC
Q 042000 24 RWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGKIPRWLG-NLTRLNHIIMPENHLEGLIPILDISDNNISGRLPSC 102 (249)
Q Consensus 24 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~l~l~~~~~~~~~~~~ 102 (249)
+.++.+++.+. .+|..+ ...++.|++++|.++...+..+. .+++|++|++++|.+. .++..
T Consensus 21 ~~l~c~~~~l~-~iP~~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~---------------~i~~~ 82 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN---------------FISSE 82 (361)
T ss_dssp TEEECCSSCCS-SCCSSC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCC---------------EECTT
T ss_pred CEEEeCCCCcC-ccCccC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCC---------------ccChh
Confidence 46777777666 344333 23467777777777655555555 6677777777776665 33333
Q ss_pred CcCCCCCccEEEccCccccccCCCcchhhhcccchhcccceEEcccCeecccCCcccCCCCCccEEeCCCCCCccCCchh
Q 042000 103 TFSNCSSLVTLDLSYNRINGSIPEWNIAYIYQGKVLSLLSGLDLSCNKLISHIPPQIGNLTRIETLNLSHNNLTGSIPST 182 (249)
Q Consensus 103 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 182 (249)
.+..+++|++|++++|.+. ...+..+..+++|+.|++++|.+....+..
T Consensus 83 ~~~~l~~L~~L~Ls~N~l~-------------------------------~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~ 131 (361)
T 2xot_A 83 AFVPVPNLRYLDLSSNHLH-------------------------------TLDEFLFSDLQALEVLLLYNNHIVVVDRNA 131 (361)
T ss_dssp TTTTCTTCCEEECCSSCCC-------------------------------EECTTTTTTCTTCCEEECCSSCCCEECTTT
T ss_pred hccCCCCCCEEECCCCcCC-------------------------------cCCHHHhCCCcCCCEEECCCCcccEECHHH
Confidence 5556666666666666554 333334455556666666666665444555
Q ss_pred ccCCcccCEEEeeCCcccCCcChhh---hcCCCccEEEccccccccCCChhhhhhcc--cccccccCCcccC
Q 042000 183 FSNLKHVESLDLSNNKLNGKIPHQL---VELKTLAIFSVAYNNLSGEIPEWTAQFAT--FNESSYEGNTFLC 249 (249)
Q Consensus 183 ~~~~~~L~~l~l~~n~~~~~~~~~~---~~~~~L~~L~l~~n~l~~~~~~~~~~~~~--l~~l~l~~n~~~c 249 (249)
+..+++|+.|++++|.+.+..+..+ ..+++|+.|++++|.+++..+..+..++. ++.+++.+||+.|
T Consensus 132 ~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 132 FEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp TTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred hCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccC
Confidence 5666666666666666654333333 34666666666666666433345555554 3566667776665
No 90
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.84 E-value=5.4e-22 Score=158.61 Aligned_cols=228 Identities=19% Similarity=0.168 Sum_probs=167.7
Q ss_pred CeEeeccccCCCCC----CCCCCCC-cccEEEccCccCCCCCCccccCC-----CCCCeEEccCcccccccccccc----
Q 042000 1 SLVLSNNSLNGHMF----PRNFNLT-NLRWLQLDGNHFVGENPQSLSKC-----SSLEGLYLNNNSLSGKIPRWLG---- 66 (249)
Q Consensus 1 ~l~l~~~~l~~~~~----~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~~~~~~~~~~---- 66 (249)
+|+|++|.+++..+ ..+.+++ +|++|++++|.+.+..+..++.+ ++|++|++++|.+++..+..+.
T Consensus 26 ~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 105 (362)
T 3goz_A 26 SLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLA 105 (362)
T ss_dssp EEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHH
T ss_pred EEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHH
Confidence 47999999987666 6667888 89999999999987777777664 8999999999999866655444
Q ss_pred cc-CCCCeEeCCCCcCcC---------------ccceEEeccccccccCCC---CCcCCCC-CccEEEccCccccccCCC
Q 042000 67 NL-TRLNHIIMPENHLEG---------------LIPILDISDNNISGRLPS---CTFSNCS-SLVTLDLSYNRINGSIPE 126 (249)
Q Consensus 67 ~l-~~L~~L~l~~~~~~~---------------~~~~l~l~~~~~~~~~~~---~~~~~l~-~L~~L~l~~~~~~~~~~~ 126 (249)
.+ ++|++|++++|.++. .+..+++++|.+...... ..+...+ +|++|++++|.+....+.
T Consensus 106 ~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~ 185 (362)
T 3goz_A 106 AIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCA 185 (362)
T ss_dssp TSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHH
T ss_pred hCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHH
Confidence 34 899999999998753 366799999988732211 1234454 899999999998744332
Q ss_pred cchhhhcccchh-cccceEEcccCeecccCC----cccCC-CCCccEEeCCCCCCccCCc----hhccCCcccCEEEeeC
Q 042000 127 WNIAYIYQGKVL-SLLSGLDLSCNKLISHIP----PQIGN-LTRIETLNLSHNNLTGSIP----STFSNLKHVESLDLSN 196 (249)
Q Consensus 127 ~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~----~~l~~-~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~l~l~~ 196 (249)
.....+ ... .+|++|++++|.+.+... ..+.. .++|++|++++|.+.+..+ ..+..+++|+.|++++
T Consensus 186 ~l~~~l---~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~ 262 (362)
T 3goz_A 186 ELAKFL---ASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDY 262 (362)
T ss_dssp HHHHHH---HTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEH
T ss_pred HHHHHH---HhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEecc
Confidence 111111 123 589999999999876332 23333 4699999999999985443 4456789999999999
Q ss_pred CcccCC-------cChhhhcCCCccEEEccccccccCCChhh
Q 042000 197 NKLNGK-------IPHQLVELKTLAIFSVAYNNLSGEIPEWT 231 (249)
Q Consensus 197 n~~~~~-------~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 231 (249)
|.+.+. ++..+..+++|+.||+++|.+.+..+..+
T Consensus 263 n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~~~ 304 (362)
T 3goz_A 263 DIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPI 304 (362)
T ss_dssp HHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCHHH
T ss_pred CCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchHHH
Confidence 985533 33456678899999999999986644433
No 91
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.84 E-value=3e-19 Score=151.27 Aligned_cols=193 Identities=24% Similarity=0.295 Sum_probs=125.9
Q ss_pred CcccEEEccCccCCCCCCccccCCCCCCeEEccCccccccccccccccCCCCeEeCCCCcCcCc------cceEEecccc
Q 042000 21 TNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPENHLEGL------IPILDISDNN 94 (249)
Q Consensus 21 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~------~~~l~l~~~~ 94 (249)
.+++.|+++++.+. .+|..+. ++|++|++++|.++ .+|. .+++|++|++++|.++.. +..+++++|.
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N~ 112 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTSLPVLPPGLLELSIFSNP 112 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCSCCCCCCTTCCEEEECSCC
T ss_pred CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCCcCCCCCCCCCEEECcCCc
Confidence 46899999999998 5666554 79999999999988 5555 578999999999998754 5678999998
Q ss_pred ccccCCCCCcCCCCCccEEEccCccccccCCCcchhhhcccchhcccceEEcccCeecccCCccc---------------
Q 042000 95 ISGRLPSCTFSNCSSLVTLDLSYNRINGSIPEWNIAYIYQGKVLSLLSGLDLSCNKLISHIPPQI--------------- 159 (249)
Q Consensus 95 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l--------------- 159 (249)
+. .++. .+++|+.|++++|.+.. +|.. +++|++|++++|.++. .+..+
T Consensus 113 l~-~l~~----~l~~L~~L~L~~N~l~~-lp~~----------l~~L~~L~Ls~N~l~~-l~~~~~~L~~L~L~~N~l~~ 175 (622)
T 3g06_A 113 LT-HLPA----LPSGLCKLWIFGNQLTS-LPVL----------PPGLQELSVSDNQLAS-LPALPSELCKLWAYNNQLTS 175 (622)
T ss_dssp CC-CCCC----CCTTCCEEECCSSCCSC-CCCC----------CTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSC
T ss_pred CC-CCCC----CCCCcCEEECCCCCCCc-CCCC----------CCCCCEEECcCCcCCC-cCCccCCCCEEECCCCCCCC
Confidence 87 5554 56789999999998873 4432 3567777777776654 22211
Q ss_pred --CCCCCccEEeCCCCCCccCCchhcc-----------------CCcccCEEEeeCCcccCCcChhhhcCCCccEEEccc
Q 042000 160 --GNLTRIETLNLSHNNLTGSIPSTFS-----------------NLKHVESLDLSNNKLNGKIPHQLVELKTLAIFSVAY 220 (249)
Q Consensus 160 --~~~~~L~~L~l~~~~~~~~~~~~~~-----------------~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~ 220 (249)
..+++|+.|++++|.+.+ +|..+. .+++|+.|++++|.+.+ +| ..+++|+.|++++
T Consensus 176 l~~~~~~L~~L~Ls~N~l~~-l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~ 250 (622)
T 3g06_A 176 LPMLPSGLQELSVSDNQLAS-LPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTS-LP---VLPSELKELMVSG 250 (622)
T ss_dssp CCCCCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCS
T ss_pred CcccCCCCcEEECCCCCCCC-CCCccchhhEEECcCCcccccCCCCCCCCEEEccCCccCc-CC---CCCCcCcEEECCC
Confidence 112667777777777663 332111 11344555555555542 22 2345556666666
Q ss_pred cccccCCChhhhhhcccccccccCCc
Q 042000 221 NNLSGEIPEWTAQFATFNESSYEGNT 246 (249)
Q Consensus 221 n~l~~~~~~~~~~~~~l~~l~l~~n~ 246 (249)
|.++ .+|. .+++|+.|++++|.
T Consensus 251 N~L~-~lp~---~~~~L~~L~Ls~N~ 272 (622)
T 3g06_A 251 NRLT-SLPM---LPSGLLSLSVYRNQ 272 (622)
T ss_dssp SCCS-CCCC---CCTTCCEEECCSSC
T ss_pred CCCC-cCCc---ccccCcEEeCCCCC
Confidence 6555 3443 34556666666664
No 92
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.84 E-value=3.9e-20 Score=147.18 Aligned_cols=228 Identities=20% Similarity=0.150 Sum_probs=118.6
Q ss_pred EeeccccCCCCCCCCCCCCcccEEEccCccCCCCCCccccCCCCCCeEEccCcccccccc-ccccccCCCCe-EeCCCCc
Q 042000 3 VLSNNSLNGHMFPRNFNLTNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGKIP-RWLGNLTRLNH-IIMPENH 80 (249)
Q Consensus 3 ~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~-L~l~~~~ 80 (249)
+-+++.++ .+|..+. +++++|++++|+++...+.+|+++++|++|++++|.+.+.++ .+|.+++++.+ +.+..|.
T Consensus 15 ~C~~~~Lt-~iP~~l~--~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~ 91 (350)
T 4ay9_X 15 LCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN 91 (350)
T ss_dssp EEESTTCC-SCCTTCC--TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETT
T ss_pred EecCCCCC-ccCcCcC--CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCc
Confidence 44555565 4555542 466677777777665445566667777777777766543333 35566666554 3333444
Q ss_pred CcCc----------cceEEeccccccccCCCCCcCCCCCccEEEccCccccccCCCcchhhhcccchhcccceEEcccCe
Q 042000 81 LEGL----------IPILDISDNNISGRLPSCTFSNCSSLVTLDLSYNRINGSIPEWNIAYIYQGKVLSLLSGLDLSCNK 150 (249)
Q Consensus 81 ~~~~----------~~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 150 (249)
+... +..+++++|++. .++...+....++..+.+.++.....++...+. .....++.|++++|.
T Consensus 92 l~~l~~~~f~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~-----~~~~~l~~L~L~~N~ 165 (350)
T 4ay9_X 92 LLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFV-----GLSFESVILWLNKNG 165 (350)
T ss_dssp CCEECTTSBCCCTTCCEEEEEEECCS-SCCCCTTCCBSSCEEEEEESCTTCCEECTTSST-----TSBSSCEEEECCSSC
T ss_pred ccccCchhhhhccccccccccccccc-cCCchhhcccchhhhhhhccccccccccccchh-----hcchhhhhhcccccc
Confidence 4411 112222222222 222222333334444444332211122111100 112346677777777
Q ss_pred ecccCCcccCCCCCccEEeCCC-CCCccCCchhccCCcccCEEEeeCCcccCCcChhhhcCCCccEEEccccccccCCCh
Q 042000 151 LISHIPPQIGNLTRIETLNLSH-NNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLAIFSVAYNNLSGEIPE 229 (249)
Q Consensus 151 ~~~~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 229 (249)
++...+..+ ..++|+++++.+ |.+....+.+|..+++|+.|++++|+++...+.. +.+|+.|.+.++.-.+.+|.
T Consensus 166 i~~i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~lP~ 241 (350)
T 4ay9_X 166 IQEIHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKKLPT 241 (350)
T ss_dssp CCEECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCCCCC
T ss_pred ccCCChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCcCCC
Confidence 765433333 345677777765 4455333356677788888888888877433322 44566666555533335664
Q ss_pred hhhhhcccccccccC
Q 042000 230 WTAQFATFNESSYEG 244 (249)
Q Consensus 230 ~~~~~~~l~~l~l~~ 244 (249)
+..+++|+.+++.+
T Consensus 242 -l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 242 -LEKLVALMEASLTY 255 (350)
T ss_dssp -TTTCCSCCEEECSC
T ss_pred -chhCcChhhCcCCC
Confidence 66777777777753
No 93
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.84 E-value=8.3e-20 Score=135.88 Aligned_cols=153 Identities=20% Similarity=0.280 Sum_probs=99.0
Q ss_pred cEEEccCccCCCCCCccccCCCCCCeEEccCccccccccccccccCCCCeEeCCCCcCcCccceEEeccccccccCCCCC
Q 042000 24 RWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPENHLEGLIPILDISDNNISGRLPSCT 103 (249)
Q Consensus 24 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~l~~~~~~~~~~~~~ 103 (249)
+.++.+++.+. .+|..+. .++++|++++|.+....+..|..+++|++|++++|.+. .+....
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~---------------~~~~~~ 75 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS---------------ELAPDA 75 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCC---------------EECTTT
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCC---------------CcCHHH
Confidence 45666666665 3343332 45666666666666444445666666666666666555 222224
Q ss_pred cCCCCCccEEEccCccccccCCCcchhhhcccchhcccceEEcccCeecccCCcccCCCCCccEEeCCCCCCccCCchhc
Q 042000 104 FSNCSSLVTLDLSYNRINGSIPEWNIAYIYQGKVLSLLSGLDLSCNKLISHIPPQIGNLTRIETLNLSHNNLTGSIPSTF 183 (249)
Q Consensus 104 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 183 (249)
+..+++|++|++++|. ++...+..+..+++|+.|++++|.+.+..+..+
T Consensus 76 ~~~l~~L~~L~Ls~N~-------------------------------l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~ 124 (220)
T 2v9t_B 76 FQGLRSLNSLVLYGNK-------------------------------ITELPKSLFEGLFSLQLLLLNANKINCLRVDAF 124 (220)
T ss_dssp TTTCSSCCEEECCSSC-------------------------------CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred hhCCcCCCEEECCCCc-------------------------------CCccCHhHccCCCCCCEEECCCCCCCEeCHHHc
Confidence 4444555555554444 333334445667888888888888887667788
Q ss_pred cCCcccCEEEeeCCcccCCcChhhhcCCCccEEEcccccccc
Q 042000 184 SNLKHVESLDLSNNKLNGKIPHQLVELKTLAIFSVAYNNLSG 225 (249)
Q Consensus 184 ~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 225 (249)
..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.-
T Consensus 125 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 125 QDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 888888888888888887667777888888888888887753
No 94
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.83 E-value=1e-19 Score=144.82 Aligned_cols=216 Identities=17% Similarity=0.111 Sum_probs=153.0
Q ss_pred CCCCCCCCcccEEEccCccCCCCCCccccCCCCCCeEEccCccccccccccccccCCCCeEeCCCCcCcCccc-------
Q 042000 14 FPRNFNLTNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPENHLEGLIP------- 86 (249)
Q Consensus 14 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~------- 86 (249)
|+.++.|.. ++++-++++++ .+|..+ ..++++|++++|+++...+.+|.++++|++|++++|.+...++
T Consensus 3 p~~~C~C~~-~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L 78 (350)
T 4ay9_X 3 HHRICHCSN-RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNL 78 (350)
T ss_dssp CCSSSEEET-TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSC
T ss_pred CCCccEeeC-CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcc
Confidence 445565644 57888888887 566555 3589999999999985555689999999999999998744311
Q ss_pred -----eEEeccccccccCCCCCcCCCCCccEEEccCccccccCCCcchhhhcccchhcccceEEccc-CeecccCCcccC
Q 042000 87 -----ILDISDNNISGRLPSCTFSNCSSLVTLDLSYNRINGSIPEWNIAYIYQGKVLSLLSGLDLSC-NKLISHIPPQIG 160 (249)
Q Consensus 87 -----~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~l~ 160 (249)
.+....+++. .++...+..+++|++|++++|.+.. +++... .....+..+++.+ +.+.......+.
T Consensus 79 ~~l~~~l~~~~N~l~-~l~~~~f~~l~~L~~L~l~~n~l~~-~~~~~~------~~~~~l~~l~l~~~~~i~~l~~~~f~ 150 (350)
T 4ay9_X 79 PKLHEIRIEKANNLL-YINPEAFQNLPNLQYLLISNTGIKH-LPDVHK------IHSLQKVLLDIQDNINIHTIERNSFV 150 (350)
T ss_dssp TTCCEEEEEEETTCC-EECTTSBCCCTTCCEEEEEEECCSS-CCCCTT------CCBSSCEEEEEESCTTCCEECTTSST
T ss_pred hhhhhhhcccCCccc-ccCchhhhhcccccccccccccccc-CCchhh------cccchhhhhhhccccccccccccchh
Confidence 2445566776 5655588999999999999999873 333211 1234566788765 445554555565
Q ss_pred CC-CCccEEeCCCCCCccCCchhccCCcccCEEEeeC-CcccCCcChhhhcCCCccEEEccccccccCCChhhhhhcccc
Q 042000 161 NL-TRIETLNLSHNNLTGSIPSTFSNLKHVESLDLSN-NKLNGKIPHQLVELKTLAIFSVAYNNLSGEIPEWTAQFATFN 238 (249)
Q Consensus 161 ~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~-n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~ 238 (249)
.+ ..++.|++++|.++. ++.......+++++++.+ |.+....++.+..+++|+.||+++|.++..-+..+.++++|+
T Consensus 151 ~~~~~l~~L~L~~N~i~~-i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~~L~ 229 (350)
T 4ay9_X 151 GLSFESVILWLNKNGIQE-IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLR 229 (350)
T ss_dssp TSBSSCEEEECCSSCCCE-ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTTCCEEE
T ss_pred hcchhhhhhccccccccC-CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhccchHhh
Confidence 55 468999999999984 554444567899999986 566655556789999999999999999944344455555555
Q ss_pred cccc
Q 042000 239 ESSY 242 (249)
Q Consensus 239 ~l~l 242 (249)
.++.
T Consensus 230 ~l~~ 233 (350)
T 4ay9_X 230 ARST 233 (350)
T ss_dssp CTTC
T ss_pred hccC
Confidence 4443
No 95
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.83 E-value=2e-19 Score=133.86 Aligned_cols=153 Identities=21% Similarity=0.249 Sum_probs=80.1
Q ss_pred CeEEccCccccccccccccccCCCCeEeCCCCcCcCccceEEeccccccccC-CCCCcCCCCCccEEEccCccccccCCC
Q 042000 48 EGLYLNNNSLSGKIPRWLGNLTRLNHIIMPENHLEGLIPILDISDNNISGRL-PSCTFSNCSSLVTLDLSYNRINGSIPE 126 (249)
Q Consensus 48 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~l~~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~ 126 (249)
++++++++.++ .+|..+ ...+++|++++|.+. .+ +...+..+++|++|++++|.+.+..+.
T Consensus 14 ~~l~~s~n~l~-~iP~~~--~~~~~~L~L~~N~l~---------------~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~ 75 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHI--PQYTAELRLNNNEFT---------------VLEATGIFKKLPQLRKINFSNNKITDIEEG 75 (220)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCC---------------EECCCCCGGGCTTCCEEECCSSCCCEECTT
T ss_pred CEeEeCCCCcc-cCccCC--CCCCCEEEcCCCcCC---------------ccCchhhhccCCCCCEEECCCCcCCEECHH
Confidence 45666666655 344321 344555555555554 22 122355556666666666665422221
Q ss_pred cchhhhcccchhcccceEEcccCeecccCCcccCCCCCccEEeCCCCCCccCCchhccCCcccCEEEeeCCcccCCcChh
Q 042000 127 WNIAYIYQGKVLSLLSGLDLSCNKLISHIPPQIGNLTRIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQ 206 (249)
Q Consensus 127 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~ 206 (249)
....+.+|++|++++|.++...+..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+..|..
T Consensus 76 -------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 148 (220)
T 2v70_A 76 -------AFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGA 148 (220)
T ss_dssp -------TTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTT
T ss_pred -------HhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHH
Confidence 1122445555555555555544444555555555555555555444555555555555555555555544555
Q ss_pred hhcCCCccEEEcccccccc
Q 042000 207 LVELKTLAIFSVAYNNLSG 225 (249)
Q Consensus 207 ~~~~~~L~~L~l~~n~l~~ 225 (249)
+..+++|+.|++++|.+..
T Consensus 149 ~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 149 FDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp TTTCTTCCEEECCSCCEEC
T ss_pred hcCCCCCCEEEecCcCCcC
Confidence 5555555555555555543
No 96
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.82 E-value=4.5e-22 Score=160.47 Aligned_cols=239 Identities=19% Similarity=0.227 Sum_probs=178.0
Q ss_pred CeEeeccccCCCCC----CCCCCCCcccEEEccCccCC---CCCCccc-------cCCCCCCeEEccCccccc----ccc
Q 042000 1 SLVLSNNSLNGHMF----PRNFNLTNLRWLQLDGNHFV---GENPQSL-------SKCSSLEGLYLNNNSLSG----KIP 62 (249)
Q Consensus 1 ~l~l~~~~l~~~~~----~~~~~~~~L~~L~l~~~~~~---~~~~~~~-------~~l~~L~~L~l~~~~~~~----~~~ 62 (249)
+|+|++|.++...+ ..+.++++|++|++++|.+. +..|..+ ..+++|++|++++|.+.. .++
T Consensus 36 ~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~ 115 (386)
T 2ca6_A 36 EIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLI 115 (386)
T ss_dssp EEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHH
T ss_pred EEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHH
Confidence 47899999886544 44778999999999997543 3344444 678999999999999885 467
Q ss_pred ccccccCCCCeEeCCCCcCc-----------------------CccceEEeccccccc-cCCC--CCcCCCCCccEEEcc
Q 042000 63 RWLGNLTRLNHIIMPENHLE-----------------------GLIPILDISDNNISG-RLPS--CTFSNCSSLVTLDLS 116 (249)
Q Consensus 63 ~~~~~l~~L~~L~l~~~~~~-----------------------~~~~~l~l~~~~~~~-~~~~--~~~~~l~~L~~L~l~ 116 (249)
..+..+++|++|++++|.+. ..+..+++++|++.. .++. ..+..+++|++|+++
T Consensus 116 ~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~ 195 (386)
T 2ca6_A 116 DFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMV 195 (386)
T ss_dssp HHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECC
T ss_pred HHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECc
Confidence 78889999999999999875 467778999998862 2221 245678899999999
Q ss_pred CccccccCCCcchhhhc-ccchhcccceEEcccCeec----ccCCcccCCCCCccEEeCCCCCCccC----Cchhcc--C
Q 042000 117 YNRINGSIPEWNIAYIY-QGKVLSLLSGLDLSCNKLI----SHIPPQIGNLTRIETLNLSHNNLTGS----IPSTFS--N 185 (249)
Q Consensus 117 ~~~~~~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~----~~~~~~l~~~~~L~~L~l~~~~~~~~----~~~~~~--~ 185 (249)
+|.+.... ...... ....+++|++|++++|.++ ...+..+..+++|+.|++++|.+.+. ++..+. .
T Consensus 196 ~n~l~~~g---~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~ 272 (386)
T 2ca6_A 196 QNGIRPEG---IEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLE 272 (386)
T ss_dssp SSCCCHHH---HHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCS
T ss_pred CCCCCHhH---HHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhcc
Confidence 99876210 000111 2234778999999999985 44566778889999999999999854 456663 4
Q ss_pred CcccCEEEeeCCcccC----CcChhh-hcCCCccEEEccccccccCCC--hhh-hhhcccccccc
Q 042000 186 LKHVESLDLSNNKLNG----KIPHQL-VELKTLAIFSVAYNNLSGEIP--EWT-AQFATFNESSY 242 (249)
Q Consensus 186 ~~~L~~l~l~~n~~~~----~~~~~~-~~~~~L~~L~l~~n~l~~~~~--~~~-~~~~~l~~l~l 242 (249)
+++|+.|++++|.+.+ .++..+ ..+++|++|++++|.+++..+ ..+ ..++.++...+
T Consensus 273 ~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~~~~~l 337 (386)
T 2ca6_A 273 NIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGEL 337 (386)
T ss_dssp SCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHHHHHHHHTCCEE
T ss_pred CCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchhHHHHHHHHhhhcCcchh
Confidence 8999999999999986 377777 568999999999999997663 333 23455444443
No 97
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.82 E-value=2.6e-19 Score=138.84 Aligned_cols=172 Identities=24% Similarity=0.379 Sum_probs=138.5
Q ss_pred CCCCcccEEEccCccCCCCCCccccCCCCCCeEEccCccccccccccccccCCCCeEeCCCCcCcCccceEEeccccccc
Q 042000 18 FNLTNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPENHLEGLIPILDISDNNISG 97 (249)
Q Consensus 18 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~l~~~~~~~ 97 (249)
.++++|++|++++|.+... + .++.+++|++|++++|.+.+. +. +..+++|++|++++|.+.
T Consensus 43 ~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~--------------- 103 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDI-KP-LANLKNLGWLFLDENKVK--------------- 103 (291)
T ss_dssp HHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCC---------------
T ss_pred hhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCC-cc-cccCCCCCEEECCCCcCC---------------
Confidence 4678899999999988743 3 488899999999999998844 33 889999999999999877
Q ss_pred cCCCCCcCCCCCccEEEccCccccccCCCcchhhhcccchhcccceEEcccCeecccCCcccCCCCCccEEeCCCCCCcc
Q 042000 98 RLPSCTFSNCSSLVTLDLSYNRINGSIPEWNIAYIYQGKVLSLLSGLDLSCNKLISHIPPQIGNLTRIETLNLSHNNLTG 177 (249)
Q Consensus 98 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 177 (249)
.++ .+..+++|++|++++|.+.+ ++ ....+++|++|++++|.+++. ..+..+++|+.|++++|.+.+
T Consensus 104 ~~~--~l~~l~~L~~L~L~~n~i~~-~~--------~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~ 170 (291)
T 1h6t_A 104 DLS--SLKDLKKLKSLSLEHNGISD-IN--------GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD 170 (291)
T ss_dssp CGG--GGTTCTTCCEEECTTSCCCC-CG--------GGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCC
T ss_pred CCh--hhccCCCCCEEECCCCcCCC-Ch--------hhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCcccc
Confidence 332 36778899999999998763 21 223467899999999988664 567888999999999999985
Q ss_pred CCchhccCCcccCEEEeeCCcccCCcChhhhcCCCccEEEcccccccc
Q 042000 178 SIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLAIFSVAYNNLSG 225 (249)
Q Consensus 178 ~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 225 (249)
..+ +..+++|+.|++++|.+.+ ++ .+..+++|+.|++++|.++.
T Consensus 171 ~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 171 IVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred chh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence 444 7889999999999999985 33 47889999999999998874
No 98
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.82 E-value=1.5e-19 Score=152.76 Aligned_cols=174 Identities=24% Similarity=0.384 Sum_probs=143.3
Q ss_pred CCCCCcccEEEccCccCCCCCCccccCCCCCCeEEccCccccccccccccccCCCCeEeCCCCcCcCccceEEecccccc
Q 042000 17 NFNLTNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPENHLEGLIPILDISDNNIS 96 (249)
Q Consensus 17 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~l~~~~~~ 96 (249)
+..+++|+.|++++|.+.. ++ .++.+++|++|++++|.+.+..+ +..+++|+.|++++|.+.
T Consensus 39 ~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~-------------- 100 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIK-------------- 100 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCC--------------
T ss_pred hhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCC--------------
Confidence 4467899999999998874 33 58899999999999999885433 889999999999999877
Q ss_pred ccCCCCCcCCCCCccEEEccCccccccCCCcchhhhcccchhcccceEEcccCeecccCCcccCCCCCccEEeCCCCCCc
Q 042000 97 GRLPSCTFSNCSSLVTLDLSYNRINGSIPEWNIAYIYQGKVLSLLSGLDLSCNKLISHIPPQIGNLTRIETLNLSHNNLT 176 (249)
Q Consensus 97 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 176 (249)
.++ .+..+++|++|++++|.+.. ++ ....+++|+.|++++|.+... ..+..+++|+.|++++|.+.
T Consensus 101 -~l~--~l~~l~~L~~L~Ls~N~l~~-l~--------~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~ 166 (605)
T 1m9s_A 101 -DLS--SLKDLKKLKSLSLEHNGISD-IN--------GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS 166 (605)
T ss_dssp -CCT--TSTTCTTCCEEECTTSCCCC-CG--------GGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCC
T ss_pred -CCh--hhccCCCCCEEEecCCCCCC-Cc--------cccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCC
Confidence 333 57788999999999998873 22 234578899999999998764 66888999999999999998
Q ss_pred cCCchhccCCcccCEEEeeCCcccCCcChhhhcCCCccEEEccccccccC
Q 042000 177 GSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLAIFSVAYNNLSGE 226 (249)
Q Consensus 177 ~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 226 (249)
+..| +..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+.+.
T Consensus 167 ~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 167 DIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp CCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred Cchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence 6545 88899999999999999854 4688899999999999998754
No 99
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.81 E-value=2.8e-19 Score=142.81 Aligned_cols=174 Identities=24% Similarity=0.201 Sum_probs=127.1
Q ss_pred eEeeccccCCCCCCCCCCCCcccEEEccCccCCCCCCcccc-CCCCCCeEEccCccccccccccccccCCCCeEeCCCCc
Q 042000 2 LVLSNNSLNGHMFPRNFNLTNLRWLQLDGNHFVGENPQSLS-KCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPENH 80 (249)
Q Consensus 2 l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 80 (249)
++++++.++ .+|..+. +.++.|++++|.+....+..+. ++++|++|++++|.+....+..|..+++|++|++++|.
T Consensus 23 l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 99 (361)
T 2xot_A 23 LSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH 99 (361)
T ss_dssp EECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc
Confidence 678888887 5676665 5689999999999977777787 89999999999999997777789999999999999999
Q ss_pred CcCccceEEeccccccccCCCCCcCCCCCccEEEccCccccccCCCcchhhhcccchhcccceEEcccCeecccCCccc-
Q 042000 81 LEGLIPILDISDNNISGRLPSCTFSNCSSLVTLDLSYNRINGSIPEWNIAYIYQGKVLSLLSGLDLSCNKLISHIPPQI- 159 (249)
Q Consensus 81 ~~~~~~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l- 159 (249)
+. .++...+..+++|++|++++|.+....+. ....+.+|+.|++++|.++......+
T Consensus 100 l~---------------~~~~~~~~~l~~L~~L~L~~N~i~~~~~~-------~~~~l~~L~~L~L~~N~l~~l~~~~~~ 157 (361)
T 2xot_A 100 LH---------------TLDEFLFSDLQALEVLLLYNNHIVVVDRN-------AFEDMAQLQKLYLSQNQISRFPVELIK 157 (361)
T ss_dssp CC---------------EECTTTTTTCTTCCEEECCSSCCCEECTT-------TTTTCTTCCEEECCSSCCCSCCGGGTC
T ss_pred CC---------------cCCHHHhCCCcCCCEEECCCCcccEECHH-------HhCCcccCCEEECCCCcCCeeCHHHhc
Confidence 87 55555788889999999999887633222 11235667777777777655333333
Q ss_pred --CCCCCccEEeCCCCCCccCCchhccCCcc--cCEEEeeCCccc
Q 042000 160 --GNLTRIETLNLSHNNLTGSIPSTFSNLKH--VESLDLSNNKLN 200 (249)
Q Consensus 160 --~~~~~L~~L~l~~~~~~~~~~~~~~~~~~--L~~l~l~~n~~~ 200 (249)
..+++|+.|++++|.+....+..+..++. ++.+++++|++.
T Consensus 158 ~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 158 DGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp ----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 34667777777777776444445555554 366777777665
No 100
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.81 E-value=6.4e-19 Score=131.10 Aligned_cols=150 Identities=24% Similarity=0.307 Sum_probs=113.0
Q ss_pred eEeeccccCCCCCCCCCCCCcccEEEccCccCCCCCCccccCCCCCCeEEccCccccccccccccccCCCCeEeCCCCcC
Q 042000 2 LVLSNNSLNGHMFPRNFNLTNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPENHL 81 (249)
Q Consensus 2 l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 81 (249)
++.+++.++ .+|..+. +++++|++++|.+....+..|..+++|++|++++|.+....+..|..+++|++|++++|.+
T Consensus 16 v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l 92 (220)
T 2v9t_B 16 VDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92 (220)
T ss_dssp EECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCC
T ss_pred EEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcC
Confidence 677888887 6676665 7899999999999977777899999999999999999977789999999999999999998
Q ss_pred cCccceEEeccccccccCCCCCcCCCCCccEEEccCccccccCCCcchhhhcccchhcccceEEcccCeecccCCcccCC
Q 042000 82 EGLIPILDISDNNISGRLPSCTFSNCSSLVTLDLSYNRINGSIPEWNIAYIYQGKVLSLLSGLDLSCNKLISHIPPQIGN 161 (249)
Q Consensus 82 ~~~~~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ 161 (249)
. .++...+..+++|++|++++|.+.+. .+..+..
T Consensus 93 ~---------------~l~~~~f~~l~~L~~L~L~~N~l~~~-------------------------------~~~~~~~ 126 (220)
T 2v9t_B 93 T---------------ELPKSLFEGLFSLQLLLLNANKINCL-------------------------------RVDAFQD 126 (220)
T ss_dssp C---------------CCCTTTTTTCTTCCEEECCSSCCCCC-------------------------------CTTTTTT
T ss_pred C---------------ccCHhHccCCCCCCEEECCCCCCCEe-------------------------------CHHHcCC
Confidence 8 66665677888888888888876532 2233444
Q ss_pred CCCccEEeCCCCCCccCCchhccCCcccCEEEeeCCccc
Q 042000 162 LTRIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLN 200 (249)
Q Consensus 162 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~ 200 (249)
+++|+.|++++|.+.+..+..+..+++|+.+++++|++.
T Consensus 127 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 127 LHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 555555566655555444444555555666666666554
No 101
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.81 E-value=1.4e-18 Score=145.53 Aligned_cols=178 Identities=26% Similarity=0.377 Sum_probs=144.9
Q ss_pred CcccEEEccCccCCCCCCccccCCCCCCeEEccCccccccccccccccCCCCeEeCCCCcCcCccceEEeccccccccCC
Q 042000 21 TNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPENHLEGLIPILDISDNNISGRLP 100 (249)
Q Consensus 21 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~l~~~~~~~~~~ 100 (249)
.+++.|++++|.+.+ +|..+ .++|++|++++|.+. .+| ..+++|++|++++|.++ .++
T Consensus 59 ~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~---------------~ip 116 (571)
T 3cvr_A 59 NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLS---------------TLP 116 (571)
T ss_dssp TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCS---------------CCC
T ss_pred CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCC---------------Ccc
Confidence 389999999999986 55544 378999999999998 566 45789999999999888 444
Q ss_pred CCCcCCCCCccEEEccCccccccCCCcchhhhcccchhcccceEEcccCeecccCCcccCCCCCccEEeCCCCCCccCCc
Q 042000 101 SCTFSNCSSLVTLDLSYNRINGSIPEWNIAYIYQGKVLSLLSGLDLSCNKLISHIPPQIGNLTRIETLNLSHNNLTGSIP 180 (249)
Q Consensus 101 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 180 (249)
. +.. +|++|++++|.+.+ +|. .+++|++|++++|.++. .+. .+++|+.|++++|.+.+ +|
T Consensus 117 ~--l~~--~L~~L~Ls~N~l~~-lp~----------~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp 176 (571)
T 3cvr_A 117 E--LPA--SLKHLDVDNNQLTM-LPE----------LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LP 176 (571)
T ss_dssp C--CCT--TCCEEECCSSCCSC-CCC----------CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CC
T ss_pred h--hhc--CCCEEECCCCcCCC-CCC----------cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cc
Confidence 4 322 89999999999874 444 26789999999999876 444 56899999999999995 66
Q ss_pred hhccCCcccCEEEeeCCcccCCcChhhhcCCCc-------cEEEccccccccCCChhhhhhcccccccccCCccc
Q 042000 181 STFSNLKHVESLDLSNNKLNGKIPHQLVELKTL-------AIFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFL 248 (249)
Q Consensus 181 ~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L-------~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~n~~~ 248 (249)
. +. ++|+.|++++|.++ .+|. +.. +| +.|++++|.++ .+|..+..+++|+.+++++|++.
T Consensus 177 ~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~ 243 (571)
T 3cvr_A 177 E-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLS 243 (571)
T ss_dssp C-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCC
T ss_pred h-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCC
Confidence 6 55 89999999999998 5555 443 77 99999999999 68988888999999999999864
No 102
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.81 E-value=1.1e-18 Score=130.59 Aligned_cols=156 Identities=22% Similarity=0.262 Sum_probs=111.5
Q ss_pred CCCCeEEccCccccccccccccccCCCCeEeCCCCcCcCccceEEeccccccccCCCCCcCCCCCccEEEccCccccccC
Q 042000 45 SSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPENHLEGLIPILDISDNNISGRLPSCTFSNCSSLVTLDLSYNRINGSI 124 (249)
Q Consensus 45 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 124 (249)
+.-+.++++++.+. .+|..+. ++|++|++++|.+. .+....+..+++|++|++++|.+. .+
T Consensus 19 Cs~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~---------------~~~~~~~~~l~~L~~L~L~~N~l~-~i 79 (229)
T 3e6j_A 19 CSGTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQIT---------------KLEPGVFDSLINLKELYLGSNQLG-AL 79 (229)
T ss_dssp EETTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCC---------------CCCTTTTTTCTTCCEEECCSSCCC-CC
T ss_pred EeCCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccC---------------ccCHHHhhCccCCcEEECCCCCCC-Cc
Confidence 34567888887776 5665543 78888888888777 443336777888888888888875 33
Q ss_pred CCcchhhhcccchhcccceEEcccCeecccCCcccCCCCCccEEeCCCCCCccCCchhccCCcccCEEEeeCCcccCCcC
Q 042000 125 PEWNIAYIYQGKVLSLLSGLDLSCNKLISHIPPQIGNLTRIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIP 204 (249)
Q Consensus 125 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 204 (249)
+... ...+++|++|++++|.++...+..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.+.+..+
T Consensus 80 ~~~~------~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~ 152 (229)
T 3e6j_A 80 PVGV------FDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPH 152 (229)
T ss_dssp CTTT------TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCT
T ss_pred Chhh------cccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCH
Confidence 3211 123567788888888777666666677788888888888887 567777777888888888888876556
Q ss_pred hhhhcCCCccEEEccccccccC
Q 042000 205 HQLVELKTLAIFSVAYNNLSGE 226 (249)
Q Consensus 205 ~~~~~~~~L~~L~l~~n~l~~~ 226 (249)
..+..+++|+.|++++|.+...
T Consensus 153 ~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 153 GAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp TTTTTCTTCCEEECTTSCBCTT
T ss_pred HHHhCCCCCCEEEeeCCCccCC
Confidence 6677778888888888877644
No 103
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.81 E-value=2.9e-19 Score=131.84 Aligned_cols=187 Identities=21% Similarity=0.184 Sum_probs=149.4
Q ss_pred eEeeccccCCCCCCCCCCCCcccEEEccCccCCCCCCccccCCCCCCeEEccCccccccccccccccCCCCeEeCCCCcC
Q 042000 2 LVLSNNSLNGHMFPRNFNLTNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPENHL 81 (249)
Q Consensus 2 l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 81 (249)
++.+++.++ .+|..+ .+++++|++++|.+.+..+..|+.+++|++|++++|.+....+..|..+++|++|++++|.+
T Consensus 12 v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 88 (208)
T 2o6s_A 12 VECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL 88 (208)
T ss_dssp EECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcC
Confidence 456677776 455554 36899999999999877777789999999999999999866666788999999999999988
Q ss_pred cCccceEEeccccccccCCCCCcCCCCCccEEEccCccccccCCCcchhhhcccchhcccceEEcccCeecccCCcccCC
Q 042000 82 EGLIPILDISDNNISGRLPSCTFSNCSSLVTLDLSYNRINGSIPEWNIAYIYQGKVLSLLSGLDLSCNKLISHIPPQIGN 161 (249)
Q Consensus 82 ~~~~~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ 161 (249)
. .++...+..+++|++|++++|.+.+..+. . ...+++|++|++++|.+++..+..+..
T Consensus 89 ~---------------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~------~~~l~~L~~L~l~~N~l~~~~~~~~~~ 146 (208)
T 2o6s_A 89 Q---------------SLPNGVFDKLTQLKELALNTNQLQSLPDG-V------FDKLTQLKDLRLYQNQLKSVPDGVFDR 146 (208)
T ss_dssp C---------------CCCTTTTTTCTTCCEEECCSSCCCCCCTT-T------TTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred C---------------ccCHhHhcCccCCCEEEcCCCcCcccCHh-H------hccCCcCCEEECCCCccceeCHHHhcc
Confidence 8 55554678899999999999998743322 1 134678999999999998766667888
Q ss_pred CCCccEEeCCCCCCccCCchhccCCcccCEEEeeCCcccCCcChhhhcCCCccEEEccccccc
Q 042000 162 LTRIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLAIFSVAYNNLS 224 (249)
Q Consensus 162 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~ 224 (249)
+++|+.|++++|.+.+ .++.++.++++.|.+++.+|..+..++. +...|...
T Consensus 147 l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l~~----~~~~C~~~ 198 (208)
T 2o6s_A 147 LTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVAP----DSAKCSGS 198 (208)
T ss_dssp CTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSBCT----TCSBBTTT
T ss_pred CCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCccccC----CccccccC
Confidence 9999999999997763 4568899999999999999988776654 44445443
No 104
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.80 E-value=4.4e-19 Score=137.51 Aligned_cols=187 Identities=19% Similarity=0.291 Sum_probs=151.0
Q ss_pred ccEEEccCccCCCCCCccccCCCCCCeEEccCccccccccccccccCCCCeEeCCCCcCcCccceEEeccccccccCCCC
Q 042000 23 LRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPENHLEGLIPILDISDNNISGRLPSC 102 (249)
Q Consensus 23 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~l~~~~~~~~~~~~ 102 (249)
+..+.+.+..+.+. ..++.+++|++|++++|.+.. . +.+..+++|++|++++|.+. .++.
T Consensus 26 ~~~~~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~-~-~~~~~l~~L~~L~L~~n~l~---------------~~~~- 85 (291)
T 1h6t_A 26 TIKDNLKKKSVTDA--VTQNELNSIDQIIANNSDIKS-V-QGIQYLPNVTKLFLNGNKLT---------------DIKP- 85 (291)
T ss_dssp HHHHHTTCSCTTSE--ECHHHHHTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCC---------------CCGG-
T ss_pred HHHHHhcCCCcccc--cchhhcCcccEEEccCCCccc-C-hhHhcCCCCCEEEccCCccC---------------CCcc-
Confidence 33445655555432 235678899999999999873 3 35888999999999999887 4333
Q ss_pred CcCCCCCccEEEccCccccccCCCcchhhhcccchhcccceEEcccCeecccCCcccCCCCCccEEeCCCCCCccCCchh
Q 042000 103 TFSNCSSLVTLDLSYNRINGSIPEWNIAYIYQGKVLSLLSGLDLSCNKLISHIPPQIGNLTRIETLNLSHNNLTGSIPST 182 (249)
Q Consensus 103 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 182 (249)
+..+++|++|++++|.+.+ ++ ....+++|++|++++|.+.+. ..+..+++|+.|++++|.+.+. ..
T Consensus 86 -l~~l~~L~~L~l~~n~l~~-~~--------~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~ 151 (291)
T 1h6t_A 86 -LANLKNLGWLFLDENKVKD-LS--------SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TV 151 (291)
T ss_dssp -GTTCTTCCEEECCSSCCCC-GG--------GGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GG
T ss_pred -cccCCCCCEEECCCCcCCC-Ch--------hhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hh
Confidence 6788999999999998863 22 134578899999999998763 5678899999999999999853 57
Q ss_pred ccCCcccCEEEeeCCcccCCcChhhhcCCCccEEEccccccccCCChhhhhhcccccccccCCcc
Q 042000 183 FSNLKHVESLDLSNNKLNGKIPHQLVELKTLAIFSVAYNNLSGEIPEWTAQFATFNESSYEGNTF 247 (249)
Q Consensus 183 ~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~n~~ 247 (249)
+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+++ ++. +..+++|+.+++++|+.
T Consensus 152 l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~~-l~~l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 152 LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LRA-LAGLKNLDVLELFSQEC 212 (291)
T ss_dssp GGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CGG-GTTCTTCSEEEEEEEEE
T ss_pred hccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-Chh-hccCCCCCEEECcCCcc
Confidence 7889999999999999986544 8899999999999999984 454 88999999999999975
No 105
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.79 E-value=4e-18 Score=145.51 Aligned_cols=198 Identities=26% Similarity=0.312 Sum_probs=149.7
Q ss_pred CCCCcccEEEccCccCCC--CCCccccCCCCCCeEEccCccccccccccccccCCCCeEeCCCCcCcCc-----------
Q 042000 18 FNLTNLRWLQLDGNHFVG--ENPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPENHLEGL----------- 84 (249)
Q Consensus 18 ~~~~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~----------- 84 (249)
..+++|+.++++.|.+.. ..+..+..+.+|+++++..+... ..+..+..+++|+.+++..+.....
T Consensus 368 ~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~-~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~ 446 (635)
T 4g8a_A 368 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 446 (635)
T ss_dssp CBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEE-EECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTT
T ss_pred ccccccccchhhccccccccccccchhhhhhhhhhhccccccc-cccccccccccccchhhhhccccccccccccccccc
Confidence 356677777777776542 23344455667777777776655 3445666777788887776543222
Q ss_pred cceEEeccccccccCCCCCcCCCCCccEEEccCcccccc-CCCcchhhhcccchhcccceEEcccCeecccCCcccCCCC
Q 042000 85 IPILDISDNNISGRLPSCTFSNCSSLVTLDLSYNRINGS-IPEWNIAYIYQGKVLSLLSGLDLSCNKLISHIPPQIGNLT 163 (249)
Q Consensus 85 ~~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~ 163 (249)
+..++++.+.+....+. .+..++.+++|++++|..... .|+ ....+++|++|++++|+++...+..+..++
T Consensus 447 l~~l~ls~n~l~~~~~~-~~~~~~~L~~L~Ls~N~~~~~~~~~-------~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~ 518 (635)
T 4g8a_A 447 LIYLDISHTHTRVAFNG-IFNGLSSLEVLKMAGNSFQENFLPD-------IFTELRNLTFLDLSQCQLEQLSPTAFNSLS 518 (635)
T ss_dssp CCEEECTTSCCEECCTT-TTTTCTTCCEEECTTCEEGGGEECS-------CCTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred ccccccccccccccccc-ccccchhhhhhhhhhcccccccCch-------hhhhccccCEEECCCCccCCcChHHHcCCC
Confidence 34567777777744444 777888999999998875432 222 123467899999999999988888999999
Q ss_pred CccEEeCCCCCCccCCchhccCCcccCEEEeeCCcccCCcChhhhcC-CCccEEEccccccc
Q 042000 164 RIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVEL-KTLAIFSVAYNNLS 224 (249)
Q Consensus 164 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~-~~L~~L~l~~n~l~ 224 (249)
+|++|++++|++++..+..+..+++|+.|++++|++.+..|+.+..+ ++|+.|++++|.+.
T Consensus 519 ~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~ 580 (635)
T 4g8a_A 519 SLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 580 (635)
T ss_dssp TCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBC
T ss_pred CCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCc
Confidence 99999999999998778889999999999999999998889999887 68999999998876
No 106
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.79 E-value=2.8e-18 Score=127.58 Aligned_cols=153 Identities=22% Similarity=0.264 Sum_probs=102.2
Q ss_pred cEEEccCccCCCCCCccccCCCCCCeEEccCcccccccc-ccccccCCCCeEeCCCCcCcCccceEEeccccccccCCCC
Q 042000 24 RWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGKIP-RWLGNLTRLNHIIMPENHLEGLIPILDISDNNISGRLPSC 102 (249)
Q Consensus 24 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~l~l~~~~~~~~~~~~ 102 (249)
+.++++++.+.. +|..+ ...+++|++++|.+....+ ..|..+++|++|++++|.++ .++..
T Consensus 14 ~~l~~s~n~l~~-iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~---------------~i~~~ 75 (220)
T 2v70_A 14 TTVDCSNQKLNK-IPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT---------------DIEEG 75 (220)
T ss_dssp TEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCC---------------EECTT
T ss_pred CEeEeCCCCccc-CccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCC---------------EECHH
Confidence 466777766653 34333 2345677777776664423 34666777777777776666 33333
Q ss_pred CcCCCCCccEEEccCccccccCCCcchhhhcccchhcccceEEcccCeecccCCcccCCCCCccEEeCCCCCCccCCchh
Q 042000 103 TFSNCSSLVTLDLSYNRINGSIPEWNIAYIYQGKVLSLLSGLDLSCNKLISHIPPQIGNLTRIETLNLSHNNLTGSIPST 182 (249)
Q Consensus 103 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 182 (249)
.+..+++|++|++++|.+.+..+. ....+++|++|++++|.++...+..+..+++|+.|++++|.+.+..|..
T Consensus 76 ~~~~l~~L~~L~Ls~N~l~~~~~~-------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 148 (220)
T 2v70_A 76 AFEGASGVNEILLTSNRLENVQHK-------MFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGA 148 (220)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCGG-------GGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTT
T ss_pred HhCCCCCCCEEECCCCccCccCHh-------HhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHH
Confidence 566667777777777776532221 1123566777777777777766777788888888888888888766788
Q ss_pred ccCCcccCEEEeeCCcccC
Q 042000 183 FSNLKHVESLDLSNNKLNG 201 (249)
Q Consensus 183 ~~~~~~L~~l~l~~n~~~~ 201 (249)
+..+++|+.|++++|++..
T Consensus 149 ~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 149 FDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp TTTCTTCCEEECCSCCEEC
T ss_pred hcCCCCCCEEEecCcCCcC
Confidence 8888888888888888864
No 107
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.78 E-value=6.1e-18 Score=126.58 Aligned_cols=152 Identities=25% Similarity=0.353 Sum_probs=88.8
Q ss_pred cEEEccCccCCCCCCccccCCCCCCeEEccCccccccccccccccCCCCeEeCCCCcCcCccceEEeccccccccCCCCC
Q 042000 24 RWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPENHLEGLIPILDISDNNISGRLPSCT 103 (249)
Q Consensus 24 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~l~~~~~~~~~~~~~ 103 (249)
+.++.+++.+. .+|..+ .++|++|++++|.+.+..+..|..+++|++|++++|.+. .++...
T Consensus 22 ~~v~c~~~~l~-~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~---------------~i~~~~ 83 (229)
T 3e6j_A 22 TTVDCRSKRHA-SVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG---------------ALPVGV 83 (229)
T ss_dssp TEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC---------------CCCTTT
T ss_pred CEeEccCCCcC-ccCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCC---------------CcChhh
Confidence 44555555554 333322 255666666666665554555666666666666666554 444334
Q ss_pred cCCCCCccEEEccCccccccCCCcchhhhcccchhcccceEEcccCeecccCCcccCCCCCccEEeCCCCCCccCCchhc
Q 042000 104 FSNCSSLVTLDLSYNRINGSIPEWNIAYIYQGKVLSLLSGLDLSCNKLISHIPPQIGNLTRIETLNLSHNNLTGSIPSTF 183 (249)
Q Consensus 104 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 183 (249)
+..+++|++|++++|.+... +... ...+.+|++|++++|.+.. .+..+..+++|+.|++++|.+.+..+..+
T Consensus 84 ~~~l~~L~~L~Ls~N~l~~l-~~~~------~~~l~~L~~L~Ls~N~l~~-lp~~~~~l~~L~~L~L~~N~l~~~~~~~~ 155 (229)
T 3e6j_A 84 FDSLTQLTVLDLGTNQLTVL-PSAV------FDRLVHLKELFMCCNKLTE-LPRGIERLTHLTHLALDQNQLKSIPHGAF 155 (229)
T ss_dssp TTTCTTCCEEECCSSCCCCC-CTTT------TTTCTTCCEEECCSSCCCS-CCTTGGGCTTCSEEECCSSCCCCCCTTTT
T ss_pred cccCCCcCEEECCCCcCCcc-ChhH------hCcchhhCeEeccCCcccc-cCcccccCCCCCEEECCCCcCCccCHHHH
Confidence 55566666666666665522 2111 1224556666666666653 45556667777777777777775445566
Q ss_pred cCCcccCEEEeeCCcccC
Q 042000 184 SNLKHVESLDLSNNKLNG 201 (249)
Q Consensus 184 ~~~~~L~~l~l~~n~~~~ 201 (249)
..+++|+.+++++|++..
T Consensus 156 ~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 156 DRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp TTCTTCCEEECTTSCBCT
T ss_pred hCCCCCCEEEeeCCCccC
Confidence 777777777777777764
No 108
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.77 E-value=6e-19 Score=149.16 Aligned_cols=189 Identities=20% Similarity=0.281 Sum_probs=153.8
Q ss_pred CcccEEEccCccCCCCCCccccCCCCCCeEEccCccccccccccccccCCCCeEeCCCCcCcCccceEEeccccccccCC
Q 042000 21 TNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPENHLEGLIPILDISDNNISGRLP 100 (249)
Q Consensus 21 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~l~~~~~~~~~~ 100 (249)
..+..+.+..+.+.... .+..+.+|+.|++++|.+. .++ .+..+++|+.|++++|.+. .++
T Consensus 21 ~~l~~l~l~~~~i~~~~--~~~~L~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~Ls~N~l~---------------~~~ 81 (605)
T 1m9s_A 21 AETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLT---------------DIK 81 (605)
T ss_dssp HHHHHHHTTCSCTTSEE--CHHHHTTCCCCBCTTCCCC-CCT-TGGGCTTCCEEECTTSCCC---------------CCG
T ss_pred HHHHHHhccCCCccccc--chhcCCCCCEEECcCCCCC-CCh-HHccCCCCCEEEeeCCCCC---------------CCh
Confidence 34555666666665332 3567899999999999987 333 6889999999999999887 333
Q ss_pred CCCcCCCCCccEEEccCccccccCCCcchhhhcccchhcccceEEcccCeecccCCcccCCCCCccEEeCCCCCCccCCc
Q 042000 101 SCTFSNCSSLVTLDLSYNRINGSIPEWNIAYIYQGKVLSLLSGLDLSCNKLISHIPPQIGNLTRIETLNLSHNNLTGSIP 180 (249)
Q Consensus 101 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 180 (249)
. +..+++|+.|++++|.+.. ++ ....+++|+.|++++|.+.+. ..+..+++|+.|++++|.+.+.
T Consensus 82 ~--l~~l~~L~~L~Ls~N~l~~-l~--------~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l-- 146 (605)
T 1m9s_A 82 P--LTNLKNLGWLFLDENKIKD-LS--------SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI-- 146 (605)
T ss_dssp G--GGGCTTCCEEECCSSCCCC-CT--------TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--
T ss_pred h--hccCCCCCEEECcCCCCCC-Ch--------hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--
Confidence 2 6788999999999999873 22 124478899999999998763 4588899999999999999853
Q ss_pred hhccCCcccCEEEeeCCcccCCcChhhhcCCCccEEEccccccccCCChhhhhhcccccccccCCcc
Q 042000 181 STFSNLKHVESLDLSNNKLNGKIPHQLVELKTLAIFSVAYNNLSGEIPEWTAQFATFNESSYEGNTF 247 (249)
Q Consensus 181 ~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~n~~ 247 (249)
..+..+++|+.|++++|.+.+..+ +..+++|+.|+|++|.+++ ++ .+..+++|+.|++++|++
T Consensus 147 ~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 147 TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQEC 209 (605)
T ss_dssp GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEECCSEEE
T ss_pred hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEccCCcC
Confidence 578899999999999999986655 8899999999999999985 44 588999999999999975
No 109
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.77 E-value=3.1e-18 Score=125.29 Aligned_cols=106 Identities=25% Similarity=0.349 Sum_probs=68.3
Q ss_pred hcccceEEcccCeecccCCcccCCCCCccEEeCCCCCCccCCchhccCCcccCEEEeeCCc-ccCCcChhhhcCCCccEE
Q 042000 138 LSLLSGLDLSCNKLISHIPPQIGNLTRIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNK-LNGKIPHQLVELKTLAIF 216 (249)
Q Consensus 138 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~-~~~~~~~~~~~~~~L~~L 216 (249)
+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|. +. .++ .+..+++|+.|
T Consensus 87 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L 164 (197)
T 4ezg_A 87 LSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSL 164 (197)
T ss_dssp CTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEE
T ss_pred CCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEE
Confidence 4445555555555544445556667777777777777775566666777777777777776 54 333 56677777777
Q ss_pred EccccccccCCChhhhhhcccccccccCCcc
Q 042000 217 SVAYNNLSGEIPEWTAQFATFNESSYEGNTF 247 (249)
Q Consensus 217 ~l~~n~l~~~~~~~~~~~~~l~~l~l~~n~~ 247 (249)
++++|.+++ ++ .+..+++|+.+++++|++
T Consensus 165 ~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 165 NIQFDGVHD-YR-GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp ECTTBCCCC-CT-TGGGCSSCCEEEECBC--
T ss_pred ECCCCCCcC-hH-HhccCCCCCEEEeeCccc
Confidence 777777763 33 466777777777777763
No 110
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.76 E-value=4.8e-18 Score=129.73 Aligned_cols=161 Identities=25% Similarity=0.326 Sum_probs=86.6
Q ss_pred eeccccCCCCCCCCCCCCcccEEEccCccCCCCCCccccCCCCCCeEEccCccccccccccccccCCCCeEeCCCCcCcC
Q 042000 4 LSNNSLNGHMFPRNFNLTNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPENHLEG 83 (249)
Q Consensus 4 l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 83 (249)
++++.+++. + .+.++++|++|++++|.+.. .+ .++.+++|++|++++|.+.+. +. +..+++|++|++++|.+.
T Consensus 26 l~~~~i~~~-~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~-~~-l~~l~~L~~L~L~~N~l~- 98 (263)
T 1xeu_A 26 LGKQSVTDL-V-SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDL-SP-LKDLTKLEELSVNRNRLK- 98 (263)
T ss_dssp HTCSCTTSE-E-CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCSSCCEEECCSSCCS-
T ss_pred hcCCCcccc-c-chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCC-hh-hccCCCCCEEECCCCccC-
Confidence 444555422 2 45556666666666666652 33 455666666666666666533 22 566666666666666655
Q ss_pred ccceEEeccccccccCCCCCcCCCCCccEEEccCccccccCCCcchhhhcccchhcccceEEcccCeecccCCcccCCCC
Q 042000 84 LIPILDISDNNISGRLPSCTFSNCSSLVTLDLSYNRINGSIPEWNIAYIYQGKVLSLLSGLDLSCNKLISHIPPQIGNLT 163 (249)
Q Consensus 84 ~~~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~ 163 (249)
.++. +.. ++|++|++++|.+.+ ++ ....+++|++|++++|.+++. ..+..++
T Consensus 99 --------------~l~~--~~~-~~L~~L~L~~N~l~~-~~--------~l~~l~~L~~L~Ls~N~i~~~--~~l~~l~ 150 (263)
T 1xeu_A 99 --------------NLNG--IPS-ACLSRLFLDNNELRD-TD--------SLIHLKNLEILSIRNNKLKSI--VMLGFLS 150 (263)
T ss_dssp --------------CCTT--CCC-SSCCEEECCSSCCSB-SG--------GGTTCTTCCEEECTTSCCCBC--GGGGGCT
T ss_pred --------------CcCc--ccc-CcccEEEccCCccCC-Ch--------hhcCcccccEEECCCCcCCCC--hHHccCC
Confidence 2222 111 556666666665542 11 112345566666666655442 2355556
Q ss_pred CccEEeCCCCCCccCCchhccCCcccCEEEeeCCcccC
Q 042000 164 RIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNG 201 (249)
Q Consensus 164 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~ 201 (249)
+|+.|++++|.+.+. ..+..+++|+.|++++|++..
T Consensus 151 ~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 151 KLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp TCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEEC
T ss_pred CCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccC
Confidence 666666666666533 445555666666666665553
No 111
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.76 E-value=5.5e-18 Score=123.94 Aligned_cols=154 Identities=18% Similarity=0.232 Sum_probs=97.5
Q ss_pred cCCCCCCeEEccCccccccccccccccCCCCeEeCCCCcCcCccceEEeccccccccCCCCCcCCCCCccEEEccCcccc
Q 042000 42 SKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPENHLEGLIPILDISDNNISGRLPSCTFSNCSSLVTLDLSYNRIN 121 (249)
Q Consensus 42 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 121 (249)
+.+++|++|++++|.+. .++ .+..+++|++|++++|.+. .++ .+..+++|++|++++|.+.
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~---------------~~~--~l~~l~~L~~L~l~~n~l~ 101 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT---------------NYN--PISGLSNLERLRIMGKDVT 101 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS---------------CCG--GGTTCTTCCEEEEECTTCB
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC---------------cch--hhhcCCCCCEEEeECCccC
Confidence 44555666666666555 333 4555666666666555433 211 3445566666666666655
Q ss_pred ccCCCcchhhhcccchhcccceEEcccCeecccCCcccCCCCCccEEeCCCCC-CccCCchhccCCcccCEEEeeCCccc
Q 042000 122 GSIPEWNIAYIYQGKVLSLLSGLDLSCNKLISHIPPQIGNLTRIETLNLSHNN-LTGSIPSTFSNLKHVESLDLSNNKLN 200 (249)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~l~l~~n~~~ 200 (249)
+..+.. ...+++|++|++++|.+++..+..+..+++|++|++++|. +. .++ .+..+++|+.|++++|.+.
T Consensus 102 ~~~~~~-------l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~ 172 (197)
T 4ezg_A 102 SDKIPN-------LSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVH 172 (197)
T ss_dssp GGGSCC-------CTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCC
T ss_pred cccChh-------hcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCc
Confidence 322221 1235567777777777665556667778888899998887 55 455 5778888999999999887
Q ss_pred CCcChhhhcCCCccEEEcccccccc
Q 042000 201 GKIPHQLVELKTLAIFSVAYNNLSG 225 (249)
Q Consensus 201 ~~~~~~~~~~~~L~~L~l~~n~l~~ 225 (249)
+ .+ .+..+++|+.|++++|.+.+
T Consensus 173 ~-~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 173 D-YR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp C-CT-TGGGCSSCCEEEECBC----
T ss_pred C-hH-HhccCCCCCEEEeeCcccCC
Confidence 5 33 67788899999999888763
No 112
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.74 E-value=4.2e-18 Score=130.08 Aligned_cols=171 Identities=21% Similarity=0.285 Sum_probs=141.8
Q ss_pred CCCcccEEEccCccCCCCCCccccCCCCCCeEEccCccccccccccccccCCCCeEeCCCCcCcCccceEEecccccccc
Q 042000 19 NLTNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPENHLEGLIPILDISDNNISGR 98 (249)
Q Consensus 19 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~l~~~~~~~~ 98 (249)
++.++..++++++.+.+. + .+..+++|++|++++|.+. .++ .+..+++|++|++++|.+. .
T Consensus 17 ~l~~l~~l~l~~~~i~~~-~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~---------------~ 77 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDL-V-SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQIS---------------D 77 (263)
T ss_dssp HHHHHHHHHHTCSCTTSE-E-CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCC---------------C
T ss_pred HHHHHHHHHhcCCCcccc-c-chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccC---------------C
Confidence 456777888999888743 3 5788999999999999987 444 7889999999999999887 4
Q ss_pred CCCCCcCCCCCccEEEccCccccccCCCcchhhhcccchhcccceEEcccCeecccCCcccCCCCCccEEeCCCCCCccC
Q 042000 99 LPSCTFSNCSSLVTLDLSYNRINGSIPEWNIAYIYQGKVLSLLSGLDLSCNKLISHIPPQIGNLTRIETLNLSHNNLTGS 178 (249)
Q Consensus 99 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 178 (249)
++. +..+++|++|++++|.+.+ ++.. .. .+|++|++++|.+++. ..+..+++|+.|++++|.+++
T Consensus 78 ~~~--l~~l~~L~~L~L~~N~l~~-l~~~--------~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~- 142 (263)
T 1xeu_A 78 LSP--LKDLTKLEELSVNRNRLKN-LNGI--------PS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKS- 142 (263)
T ss_dssp CGG--GTTCSSCCEEECCSSCCSC-CTTC--------CC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCB-
T ss_pred Chh--hccCCCCCEEECCCCccCC-cCcc--------cc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCC-
Confidence 443 7788999999999999873 3331 11 7899999999998763 458889999999999999985
Q ss_pred CchhccCCcccCEEEeeCCcccCCcChhhhcCCCccEEEccccccccC
Q 042000 179 IPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLAIFSVAYNNLSGE 226 (249)
Q Consensus 179 ~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 226 (249)
++ .+..+++|+.|++++|.+.+. ..+..+++|+.|++++|.++..
T Consensus 143 ~~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 143 IV-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp CG-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred Ch-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 44 678899999999999999865 6788899999999999998854
No 113
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.73 E-value=1.5e-17 Score=121.09 Aligned_cols=133 Identities=20% Similarity=0.259 Sum_probs=98.2
Q ss_pred CeEeCCCCcCcCccceEEeccccccccCCCCCcCCCCCccEEEccCccccccCCCcchhhhcccchhcccceEEcccCee
Q 042000 72 NHIIMPENHLEGLIPILDISDNNISGRLPSCTFSNCSSLVTLDLSYNRINGSIPEWNIAYIYQGKVLSLLSGLDLSCNKL 151 (249)
Q Consensus 72 ~~L~l~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 151 (249)
++++++++.+. .+|. .+. ..+++|++++|.+.+..+... ...+++|++|++++|.+
T Consensus 11 ~~l~~s~~~l~---------------~ip~-~~~--~~l~~L~l~~n~i~~~~~~~~------~~~l~~L~~L~Ls~N~l 66 (192)
T 1w8a_A 11 TTVDCTGRGLK---------------EIPR-DIP--LHTTELLLNDNELGRISSDGL------FGRLPHLVKLELKRNQL 66 (192)
T ss_dssp TEEECTTSCCS---------------SCCS-CCC--TTCSEEECCSCCCCSBCCSCS------GGGCTTCCEEECCSSCC
T ss_pred CEEEcCCCCcC---------------cCcc-CCC--CCCCEEECCCCcCCccCCccc------cccCCCCCEEECCCCCC
Confidence 55666666555 6665 222 278888888888764333211 13467788888888888
Q ss_pred cccCCcccCCCCCccEEeCCCCCCccCCchhccCCcccCEEEeeCCcccCCcChhhhcCCCccEEEccccccccCCC
Q 042000 152 ISHIPPQIGNLTRIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLAIFSVAYNNLSGEIP 228 (249)
Q Consensus 152 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 228 (249)
+...+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+....+
T Consensus 67 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 67 TGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 77777788888888888888888887666777888888888888888887777888888888888888888875543
No 114
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.72 E-value=5.3e-17 Score=118.19 Aligned_cols=108 Identities=27% Similarity=0.322 Sum_probs=51.5
Q ss_pred CccEEEccCccccccCCCcchhhhcccchhcccceEEcccCeecccCCcccCCCCCccEEeCCCCCCccCCchhccCCcc
Q 042000 109 SLVTLDLSYNRINGSIPEWNIAYIYQGKVLSLLSGLDLSCNKLISHIPPQIGNLTRIETLNLSHNNLTGSIPSTFSNLKH 188 (249)
Q Consensus 109 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 188 (249)
.+++|++++|.+. .+|. ....+.+|++|++++|.++...+..+..+++|+.|++++|.+.+..+..+..+++
T Consensus 32 ~l~~L~L~~n~i~-~ip~-------~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~ 103 (193)
T 2wfh_A 32 DVTELYLDGNQFT-LVPK-------ELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKS 103 (193)
T ss_dssp TCCEEECCSSCCC-SCCG-------GGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTT
T ss_pred CCCEEECCCCcCc-hhHH-------HhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCC
Confidence 4555555555544 2221 1122344555555555554444444445555555555555555444444445555
Q ss_pred cCEEEeeCCcccCCcChhhhcCCCccEEEccccccc
Q 042000 189 VESLDLSNNKLNGKIPHQLVELKTLAIFSVAYNNLS 224 (249)
Q Consensus 189 L~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~ 224 (249)
|+.|++++|.+....+..+..+++|+.|++++|.+.
T Consensus 104 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 104 LRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 555555555554333334444555555555555443
No 115
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.72 E-value=4.3e-17 Score=128.53 Aligned_cols=103 Identities=15% Similarity=0.070 Sum_probs=90.1
Q ss_pred hcccceEEcccCeecccCCcccCCCCCccEEeCCCCCCccCCchhccCCcccC-EEEeeCCcccCCcChhhhcCCCccEE
Q 042000 138 LSLLSGLDLSCNKLISHIPPQIGNLTRIETLNLSHNNLTGSIPSTFSNLKHVE-SLDLSNNKLNGKIPHQLVELKTLAIF 216 (249)
Q Consensus 138 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~-~l~l~~n~~~~~~~~~~~~~~~L~~L 216 (249)
+.+|+.+++++|+++......|..+++|+++++..+ +....+.+|.++.+|+ .+++.. .+....+.+|..+++|+.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 678999999999888888888999999999999998 6656677899999999 999998 7776778999999999999
Q ss_pred EccccccccCCChhhhhhcccccccc
Q 042000 217 SVAYNNLSGEIPEWTAQFATFNESSY 242 (249)
Q Consensus 217 ~l~~n~l~~~~~~~~~~~~~l~~l~l 242 (249)
+++.|.++...+..|.++++|+.+..
T Consensus 303 ~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 303 LATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred EeCCCccCccchhhhcCCcchhhhcc
Confidence 99999998666778999999988753
No 116
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.71 E-value=6.2e-20 Score=154.20 Aligned_cols=204 Identities=21% Similarity=0.219 Sum_probs=139.8
Q ss_pred CCCCcccEEEccCccCCCCCCccccCCCCCCeEEccCcc-------------ccccccccccccCCCCeEe-CCCCcCcC
Q 042000 18 FNLTNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNS-------------LSGKIPRWLGNLTRLNHII-MPENHLEG 83 (249)
Q Consensus 18 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-------------~~~~~~~~~~~l~~L~~L~-l~~~~~~~ 83 (249)
..+++|+.|++++|.+. .+|..++++.+|+.|++++|. ..+..|..++.+++|+.|+ ++.+.+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~- 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD- 423 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-
Confidence 34566777777777765 556667777777777765543 2334455566666666666 4443322
Q ss_pred ccceEEeccccccccCCCCCcCCCCCccEEEccCccccccCCCcchhhhcccchhcccceEEcccCeecccCCcccCCCC
Q 042000 84 LIPILDISDNNISGRLPSCTFSNCSSLVTLDLSYNRINGSIPEWNIAYIYQGKVLSLLSGLDLSCNKLISHIPPQIGNLT 163 (249)
Q Consensus 84 ~~~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~ 163 (249)
.+..+.+..+.+. .++. ..|+.|++++|.+.+ +|. ...+++|+.|++++|.++ ..|..++.++
T Consensus 424 ~L~~l~l~~n~i~-~l~~------~~L~~L~Ls~n~l~~-lp~--------~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~ 486 (567)
T 1dce_A 424 DLRSKFLLENSVL-KMEY------ADVRVLHLAHKDLTV-LCH--------LEQLLLVTHLDLSHNRLR-ALPPALAALR 486 (567)
T ss_dssp HHHHHHHHHHHHH-HHHH------TTCSEEECTTSCCSS-CCC--------GGGGTTCCEEECCSSCCC-CCCGGGGGCT
T ss_pred hhhhhhhhccccc-ccCc------cCceEEEecCCCCCC-CcC--------ccccccCcEeecCccccc-ccchhhhcCC
Confidence 1111222233332 1111 248889999998873 443 234678999999999887 4677888899
Q ss_pred CccEEeCCCCCCccCCchhccCCcccCEEEeeCCcccCCc-ChhhhcCCCccEEEccccccccCCCh---hhhhhccccc
Q 042000 164 RIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKI-PHQLVELKTLAIFSVAYNNLSGEIPE---WTAQFATFNE 239 (249)
Q Consensus 164 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~-~~~~~~~~~L~~L~l~~n~l~~~~~~---~~~~~~~l~~ 239 (249)
+|+.|++++|.+++ +| .+..+++|+.|++++|.+.+.. |..+..+++|+.|++++|.+++..+. .+..+++|+.
T Consensus 487 ~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~ 564 (567)
T 1dce_A 487 CLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSS 564 (567)
T ss_dssp TCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSE
T ss_pred CCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCc
Confidence 99999999999985 66 7888999999999999998765 88899999999999999998865432 3345788877
Q ss_pred ccc
Q 042000 240 SSY 242 (249)
Q Consensus 240 l~l 242 (249)
|++
T Consensus 565 L~l 567 (567)
T 1dce_A 565 ILT 567 (567)
T ss_dssp EEC
T ss_pred cCC
Confidence 753
No 117
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.69 E-value=3.2e-16 Score=112.54 Aligned_cols=114 Identities=25% Similarity=0.293 Sum_probs=81.7
Q ss_pred CCccEEEccCccccccCCCcchhhhcccchhcccceEEcccCeecccCCcccCCCCCccEEeCCCCCCccCCchhccCCc
Q 042000 108 SSLVTLDLSYNRINGSIPEWNIAYIYQGKVLSLLSGLDLSCNKLISHIPPQIGNLTRIETLNLSHNNLTGSIPSTFSNLK 187 (249)
Q Consensus 108 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 187 (249)
+++++|++++|.+.+ ++... ...+++|++|++++|.++...+..+..+++|+.|++++|.+++..+..+..++
T Consensus 28 ~~l~~L~l~~n~l~~-~~~~~------~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~ 100 (177)
T 2o6r_A 28 SSATRLELESNKLQS-LPHGV------FDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLT 100 (177)
T ss_dssp TTCSEEECCSSCCCC-CCTTT------TTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred CCCcEEEeCCCcccE-eCHHH------hcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCc
Confidence 578888888887763 22211 12356788888888887766556667788888888888888765556667778
Q ss_pred ccCEEEeeCCcccCCcChhhhcCCCccEEEccccccccCCC
Q 042000 188 HVESLDLSNNKLNGKIPHQLVELKTLAIFSVAYNNLSGEIP 228 (249)
Q Consensus 188 ~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 228 (249)
+|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+
T Consensus 101 ~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 101 QLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred ccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 88888888888876555566778888888888888775443
No 118
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.67 E-value=6.4e-19 Score=148.09 Aligned_cols=197 Identities=17% Similarity=0.157 Sum_probs=143.1
Q ss_pred cCCCCCCeEEccCccccccccccccccCCCCeEeCCCCcCcCccceEEeccccccccCCCCCcCCCCCccEEE-ccCccc
Q 042000 42 SKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPENHLEGLIPILDISDNNISGRLPSCTFSNCSSLVTLD-LSYNRI 120 (249)
Q Consensus 42 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~l~~L~~L~-l~~~~~ 120 (249)
..+++|+.|++++|.+. .+|..++.+++|+.|++++|.....+..+ +..+...+..+. .+..+++|+.|+ ++.+.+
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~l-l~~~~~~~~~~~-~l~~l~~L~~L~~l~~n~~ 422 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILL-MRALDPLLYEKE-TLQYFSTLKAVDPMRAAYL 422 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHCTGGGHHH-HHHHHHHHHHHCGGGHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHH-HHhcccccCCHH-HHHHHHhcccCcchhhccc
Confidence 46789999999999997 78999999999999998665311000000 000001112222 455666777776 444432
Q ss_pred cccCCCcch-hhhcccchhcccceEEcccCeecccCCcccCCCCCccEEeCCCCCCccCCchhccCCcccCEEEeeCCcc
Q 042000 121 NGSIPEWNI-AYIYQGKVLSLLSGLDLSCNKLISHIPPQIGNLTRIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKL 199 (249)
Q Consensus 121 ~~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~ 199 (249)
. .++.... ......-....|+.|++++|.++. .|. ++.+++|+.|++++|.++ .+|..+..+++|+.|++++|.+
T Consensus 423 ~-~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l 498 (567)
T 1dce_A 423 D-DLRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNAL 498 (567)
T ss_dssp H-HHHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCC
T ss_pred c-hhhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCC
Confidence 2 1111000 000011123468999999999876 555 889999999999999999 7899999999999999999999
Q ss_pred cCCcChhhhcCCCccEEEccccccccCC-ChhhhhhcccccccccCCcc
Q 042000 200 NGKIPHQLVELKTLAIFSVAYNNLSGEI-PEWTAQFATFNESSYEGNTF 247 (249)
Q Consensus 200 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~~~~l~~l~l~~n~~ 247 (249)
++ +| .+..+++|+.|++++|.+++.. |..+..+++|+.|++++|++
T Consensus 499 ~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l 545 (567)
T 1dce_A 499 EN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 545 (567)
T ss_dssp CC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGG
T ss_pred CC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcC
Confidence 85 56 7899999999999999999776 89999999999999999986
No 119
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.67 E-value=6.6e-16 Score=109.91 Aligned_cols=130 Identities=21% Similarity=0.196 Sum_probs=80.1
Q ss_pred CCccEEEccCcccc-ccCCCcchhhhcccchhcccceEEcccCeecccCCcccCCCCCccEEeCCCCCCccCCchhccCC
Q 042000 108 SSLVTLDLSYNRIN-GSIPEWNIAYIYQGKVLSLLSGLDLSCNKLISHIPPQIGNLTRIETLNLSHNNLTGSIPSTFSNL 186 (249)
Q Consensus 108 ~~L~~L~l~~~~~~-~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 186 (249)
++|++|++++|.+. +.+|.. ...+++|++|++++|.++.. ..+..+++|+.|++++|.+.+.+|..+..+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~-------~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 94 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGL-------TAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKL 94 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSC-------CGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHC
T ss_pred ccCCEEECCCCCCChhhHHHH-------HHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhC
Confidence 45666666666654 333331 12245666666666665543 556666777777777777765466666666
Q ss_pred cccCEEEeeCCcccCCc-ChhhhcCCCccEEEccccccccCCC---hhhhhhcccccccccCCc
Q 042000 187 KHVESLDLSNNKLNGKI-PHQLVELKTLAIFSVAYNNLSGEIP---EWTAQFATFNESSYEGNT 246 (249)
Q Consensus 187 ~~L~~l~l~~n~~~~~~-~~~~~~~~~L~~L~l~~n~l~~~~~---~~~~~~~~l~~l~l~~n~ 246 (249)
++|+.|++++|.+.+.. +..+..+++|+.|++++|.+++..+ ..+..+++|+.+++++|.
T Consensus 95 ~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 95 PNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp TTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred CCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC
Confidence 77777777777776432 2566667777777777777764433 356667777777776665
No 120
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.66 E-value=6e-16 Score=107.90 Aligned_cols=128 Identities=19% Similarity=0.188 Sum_probs=101.2
Q ss_pred CCccEEEccCcccc-ccCCCcchhhhcccchhcccceEEcccCeecccCCcccCCCCCccEEeCCCCCCccCCchhccCC
Q 042000 108 SSLVTLDLSYNRIN-GSIPEWNIAYIYQGKVLSLLSGLDLSCNKLISHIPPQIGNLTRIETLNLSHNNLTGSIPSTFSNL 186 (249)
Q Consensus 108 ~~L~~L~l~~~~~~-~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 186 (249)
+++++|++++|.+. +.+|.. ...+++|++|++++|.++.. ..+..+++|+.|++++|.+.+.+|..+..+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~-------~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l 87 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGL-------TDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKC 87 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSC-------CTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHC
T ss_pred ccCeEEEccCCcCChhHHHHH-------HhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhC
Confidence 56777777777765 444431 12356788888888877654 667888999999999999996688888889
Q ss_pred cccCEEEeeCCcccCC-cChhhhcCCCccEEEccccccccCCC---hhhhhhcccccccccC
Q 042000 187 KHVESLDLSNNKLNGK-IPHQLVELKTLAIFSVAYNNLSGEIP---EWTAQFATFNESSYEG 244 (249)
Q Consensus 187 ~~L~~l~l~~n~~~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~---~~~~~~~~l~~l~l~~ 244 (249)
++|++|++++|.+.+. .+..+..+++|++|++++|.+++..+ ..+..+++|+.+++++
T Consensus 88 ~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 88 PNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp TTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 9999999999999863 34788899999999999999986655 4788899999998764
No 121
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.65 E-value=1.9e-15 Score=109.87 Aligned_cols=131 Identities=27% Similarity=0.374 Sum_probs=109.4
Q ss_pred CCeEEccCccccccccccccccCCCCeEeCCCCcCcCccceEEeccccccccCCC-CCcCCCCCccEEEccCccccccCC
Q 042000 47 LEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPENHLEGLIPILDISDNNISGRLPS-CTFSNCSSLVTLDLSYNRINGSIP 125 (249)
Q Consensus 47 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~ 125 (249)
-++++++++.++ .+|..+.. ++++|++++|.+. .++. ..+..+++|++|++++|.+.+..|
T Consensus 10 ~~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~---------------~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 71 (192)
T 1w8a_A 10 GTTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELG---------------RISSDGLFGRLPHLVKLELKRNQLTGIEP 71 (192)
T ss_dssp TTEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCC---------------SBCCSCSGGGCTTCCEEECCSSCCCCBCT
T ss_pred CCEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCC---------------ccCCccccccCCCCCEEECCCCCCCCcCH
Confidence 378999999987 67776543 9999999999887 4443 247889999999999999986545
Q ss_pred CcchhhhcccchhcccceEEcccCeecccCCcccCCCCCccEEeCCCCCCccCCchhccCCcccCEEEeeCCcccCC
Q 042000 126 EWNIAYIYQGKVLSLLSGLDLSCNKLISHIPPQIGNLTRIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGK 202 (249)
Q Consensus 126 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~ 202 (249)
.. ...+.+|++|++++|.++...+..+..+++|+.|++++|.+.+..|..+..+++|+++++++|++...
T Consensus 72 ~~-------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 72 NA-------FEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp TT-------TTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred hH-------cCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 42 23478899999999999888888889999999999999999988888999999999999999999854
No 122
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.64 E-value=2.1e-17 Score=140.14 Aligned_cols=88 Identities=10% Similarity=-0.025 Sum_probs=58.4
Q ss_pred CCCCCccEEeCCCCC--CccCCchhc-cCCcccCEEEeeCCcccCC-cChhhhcCCCccEEEccccccccC-CChhhhhh
Q 042000 160 GNLTRIETLNLSHNN--LTGSIPSTF-SNLKHVESLDLSNNKLNGK-IPHQLVELKTLAIFSVAYNNLSGE-IPEWTAQF 234 (249)
Q Consensus 160 ~~~~~L~~L~l~~~~--~~~~~~~~~-~~~~~L~~l~l~~n~~~~~-~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~~ 234 (249)
..+++|+.|+++.|. +.+..+..+ ..+++|+.|++++|.+++. ++..+..+++|++|++++|.+++. ++.....+
T Consensus 433 ~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l 512 (592)
T 3ogk_B 433 IGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKL 512 (592)
T ss_dssp HHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHC
T ss_pred HhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhc
Confidence 345666666665443 332222222 3467788888888887753 355567788899999998887644 34445678
Q ss_pred cccccccccCCcc
Q 042000 235 ATFNESSYEGNTF 247 (249)
Q Consensus 235 ~~l~~l~l~~n~~ 247 (249)
++|+.+++++|..
T Consensus 513 ~~L~~L~ls~n~i 525 (592)
T 3ogk_B 513 PSLRYLWVQGYRA 525 (592)
T ss_dssp SSCCEEEEESCBC
T ss_pred CccCeeECcCCcC
Confidence 8888888888863
No 123
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.64 E-value=1.1e-16 Score=138.41 Aligned_cols=142 Identities=23% Similarity=0.235 Sum_probs=77.8
Q ss_pred CCccccCCCCCCeEEccCccccccccccccccCCCCeEeCCCCcCcCccceEEeccccccccCCCCCcCCCCCccEEEcc
Q 042000 37 NPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPENHLEGLIPILDISDNNISGRLPSCTFSNCSSLVTLDLS 116 (249)
Q Consensus 37 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 116 (249)
.+..+..+..|+.|++++|.+. .++..+..+++|++|++++|.++ .+|. .+..+++|++|+++
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~---------------~lp~-~~~~l~~L~~L~Ls 278 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT---------------ELPA-EIKNLSNLRVLDLS 278 (727)
T ss_dssp ------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS---------------CCCG-GGGGGTTCCEEECT
T ss_pred ChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc---------------ccCh-hhhCCCCCCEEeCc
Confidence 3445566666666666666665 45555556666666666666655 4443 45566666677776
Q ss_pred CccccccCCCcchhhhcccchhcccceEEcccCeecccCCcccCCCCCccEEeCCCCCCccCCchhccCCc-ccCEEEee
Q 042000 117 YNRINGSIPEWNIAYIYQGKVLSLLSGLDLSCNKLISHIPPQIGNLTRIETLNLSHNNLTGSIPSTFSNLK-HVESLDLS 195 (249)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~l~l~ 195 (249)
+|.+. .+|... ..+.+|++|++++|.++. .|..++.+++|+.|++++|.+.+..|..+.... ....++++
T Consensus 279 ~N~l~-~lp~~~-------~~l~~L~~L~L~~N~l~~-lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~ 349 (727)
T 4b8c_D 279 HNRLT-SLPAEL-------GSCFQLKYFYFFDNMVTT-LPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLR 349 (727)
T ss_dssp TSCCS-SCCSSG-------GGGTTCSEEECCSSCCCC-CCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred CCcCC-ccChhh-------cCCCCCCEEECCCCCCCc-cChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhc
Confidence 66665 444421 235566666666666643 455566666677777777666655554443221 11224455
Q ss_pred CCcccCCcC
Q 042000 196 NNKLNGKIP 204 (249)
Q Consensus 196 ~n~~~~~~~ 204 (249)
+|.+.+..|
T Consensus 350 ~N~l~~~~p 358 (727)
T 4b8c_D 350 DNRPEIPLP 358 (727)
T ss_dssp HCCCCCCCC
T ss_pred cCcccCcCc
Confidence 555544433
No 124
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.64 E-value=2.1e-15 Score=107.32 Aligned_cols=132 Identities=23% Similarity=0.245 Sum_probs=77.0
Q ss_pred CCCCeEEccCcccc-ccccccccccCCCCeEeCCCCcCcCccceEEeccccccccCCCCCcCCCCCccEEEccCcccccc
Q 042000 45 SSLEGLYLNNNSLS-GKIPRWLGNLTRLNHIIMPENHLEGLIPILDISDNNISGRLPSCTFSNCSSLVTLDLSYNRINGS 123 (249)
Q Consensus 45 ~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 123 (249)
++|++|++++|.+. +.+|..+..+++|++|++++|.+. .+ . .+..+++|++|++++|.+.
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~---------------~~-~-~~~~l~~L~~L~Ls~N~l~-- 84 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI---------------SV-S-NLPKLPKLKKLELSENRIF-- 84 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCC---------------CC-S-SCCCCSSCCEEEEESCCCC--
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCC---------------Ch-h-hhccCCCCCEEECcCCcCc--
Confidence 56666777666665 445555566666666666666555 22 1 4455566666666666554
Q ss_pred CCCcchhhhcccchhcccceEEcccCeecccCCcccCCCCCccEEeCCCCCCccCC-chhccCCcccCEEEeeCCcccCC
Q 042000 124 IPEWNIAYIYQGKVLSLLSGLDLSCNKLISHIPPQIGNLTRIETLNLSHNNLTGSI-PSTFSNLKHVESLDLSNNKLNGK 202 (249)
Q Consensus 124 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~l~l~~n~~~~~ 202 (249)
...+..+..+++|+.|++++|.+.+.. +..+..+++|+.|++++|.+.+.
T Consensus 85 -----------------------------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~ 135 (168)
T 2ell_A 85 -----------------------------GGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNL 135 (168)
T ss_dssp -----------------------------SCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTS
T ss_pred -----------------------------hHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcch
Confidence 223333334556666666666665321 14556666667777777666644
Q ss_pred cC---hhhhcCCCccEEEccccccc
Q 042000 203 IP---HQLVELKTLAIFSVAYNNLS 224 (249)
Q Consensus 203 ~~---~~~~~~~~L~~L~l~~n~l~ 224 (249)
.+ ..+..+++|+.|++++|.+.
T Consensus 136 ~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 136 NDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp TTHHHHHHTTCSSCCEETTEETTSC
T ss_pred HHHHHHHHHhCccCcEecCCCCChh
Confidence 33 35666677777777776655
No 125
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.62 E-value=8.6e-16 Score=121.10 Aligned_cols=208 Identities=16% Similarity=0.156 Sum_probs=144.3
Q ss_pred CeEeeccccC--------------------CCCCCCCCC--------CCcccEEEccCccCCCCCCccccCCCCCCeEEc
Q 042000 1 SLVLSNNSLN--------------------GHMFPRNFN--------LTNLRWLQLDGNHFVGENPQSLSKCSSLEGLYL 52 (249)
Q Consensus 1 ~l~l~~~~l~--------------------~~~~~~~~~--------~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 52 (249)
+|||++|.+. .....+|.+ |++|+++++.. .+......+|+++.+|+++++
T Consensus 53 ~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l 131 (329)
T 3sb4_A 53 VLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQI 131 (329)
T ss_dssp EEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEB
T ss_pred EEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCcccceEEc
Confidence 3788888776 223445556 88888888888 777666778888888888888
Q ss_pred cCccccccccccccccCCCCeEeCCCCcC-------cCc-------cc-eEEecccccc--------------------c
Q 042000 53 NNNSLSGKIPRWLGNLTRLNHIIMPENHL-------EGL-------IP-ILDISDNNIS--------------------G 97 (249)
Q Consensus 53 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~-------~~~-------~~-~l~l~~~~~~--------------------~ 97 (249)
.++.+....+.+|..+.++..+....... ... +. .+.+...... +
T Consensus 132 ~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~ 211 (329)
T 3sb4_A 132 RKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEG 211 (329)
T ss_dssp CCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEE
T ss_pred CCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccceEEEee
Confidence 88877656667777777666666554211 000 00 0111000000 0
Q ss_pred cCCCC----CcCCCCCccEEEccCccccccCCCcchhhhcccchhcccceEEcccCeecccCCcccCCCCCcc-EEeCCC
Q 042000 98 RLPSC----TFSNCSSLVTLDLSYNRINGSIPEWNIAYIYQGKVLSLLSGLDLSCNKLISHIPPQIGNLTRIE-TLNLSH 172 (249)
Q Consensus 98 ~~~~~----~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~-~L~l~~ 172 (249)
.+... ....+++|+.+++++|.+. .+++..+ ..+.+|+++++.++ +.......|..+++|+ .+++..
T Consensus 212 ~l~~~~~~~l~~~~~~L~~l~L~~n~i~-~I~~~aF------~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~ 283 (329)
T 3sb4_A 212 KLDNADFKLIRDYMPNLVSLDISKTNAT-TIPDFTF------AQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA 283 (329)
T ss_dssp CCCHHHHHHHHHHCTTCCEEECTTBCCC-EECTTTT------TTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT
T ss_pred eecHHHHHHHHHhcCCCeEEECCCCCcc-eecHhhh------hCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc
Confidence 00000 0012678999999998876 5555322 34778999999998 6777788899999999 999998
Q ss_pred CCCccCCchhccCCcccCEEEeeCCcccCCcChhhhcCCCccEEEc
Q 042000 173 NNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLAIFSV 218 (249)
Q Consensus 173 ~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~l 218 (249)
.++...+.+|.++++|+.+++++|.+....+.+|..+++|+.+..
T Consensus 284 -~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 284 -SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp -TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred -cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 676566789999999999999999999788889999999998863
No 126
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.61 E-value=3.3e-17 Score=138.95 Aligned_cols=85 Identities=12% Similarity=0.112 Sum_probs=42.1
Q ss_pred CCCccEEeCCCCCCccCCchhccC-CcccCEEEee----CCcccCC-----cChhhhcCCCccEEEccccc--cccCCCh
Q 042000 162 LTRIETLNLSHNNLTGSIPSTFSN-LKHVESLDLS----NNKLNGK-----IPHQLVELKTLAIFSVAYNN--LSGEIPE 229 (249)
Q Consensus 162 ~~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~l~l~----~n~~~~~-----~~~~~~~~~~L~~L~l~~n~--l~~~~~~ 229 (249)
+++|+.|++..+.+++..+..+.. +++|++|+++ .+.+++. ++..+..+++|++|++++|. +++..+.
T Consensus 377 ~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~ 456 (592)
T 3ogk_B 377 CQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLS 456 (592)
T ss_dssp CTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHH
T ss_pred CccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHH
Confidence 455555555555554333333322 5556666664 3344432 22334456666666665432 4433333
Q ss_pred hhh-hhcccccccccCCc
Q 042000 230 WTA-QFATFNESSYEGNT 246 (249)
Q Consensus 230 ~~~-~~~~l~~l~l~~n~ 246 (249)
.+. .+++|+.+++++|.
T Consensus 457 ~~~~~~~~L~~L~L~~n~ 474 (592)
T 3ogk_B 457 YIGQYSPNVRWMLLGYVG 474 (592)
T ss_dssp HHHHSCTTCCEEEECSCC
T ss_pred HHHHhCccceEeeccCCC
Confidence 333 25666766666664
No 127
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.60 E-value=1.7e-14 Score=104.93 Aligned_cols=79 Identities=29% Similarity=0.479 Sum_probs=51.4
Q ss_pred cEEEccCccCCCCCCccccCCCCCCeEEccCccccccccccccccCCCCeEeCCCCcCcCccceEEeccccccccCCCCC
Q 042000 24 RWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPENHLEGLIPILDISDNNISGRLPSCT 103 (249)
Q Consensus 24 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~l~~~~~~~~~~~~~ 103 (249)
+.++++++.+. .+|..+ ..+|++|++++|.+. .+|..|..+++|++|++++|.++ .++...
T Consensus 13 ~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~---------------~i~~~~ 73 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS---------------TLSNQS 73 (193)
T ss_dssp TEEECTTSCCS-SCCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCC---------------CCCTTT
T ss_pred CEEEcCCCCCC-cCCCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCC---------------EeCHhH
Confidence 46677777666 344333 246777777777776 55667777777777777777766 444445
Q ss_pred cCCCCCccEEEccCcccc
Q 042000 104 FSNCSSLVTLDLSYNRIN 121 (249)
Q Consensus 104 ~~~l~~L~~L~l~~~~~~ 121 (249)
|..+++|++|++++|.+.
T Consensus 74 f~~l~~L~~L~Ls~N~l~ 91 (193)
T 2wfh_A 74 FSNMTQLLTLILSYNRLR 91 (193)
T ss_dssp TTTCTTCCEEECCSSCCC
T ss_pred ccCCCCCCEEECCCCccC
Confidence 666777777777766654
No 128
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.60 E-value=6.7e-15 Score=104.86 Aligned_cols=108 Identities=25% Similarity=0.268 Sum_probs=79.4
Q ss_pred CccEEEccCccccccCCCcchhhhcccchhcccceEEcccCeecccCCcccCCCCCccEEeCCCCCCccCCchhccCCcc
Q 042000 109 SLVTLDLSYNRINGSIPEWNIAYIYQGKVLSLLSGLDLSCNKLISHIPPQIGNLTRIETLNLSHNNLTGSIPSTFSNLKH 188 (249)
Q Consensus 109 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 188 (249)
..++++++++.+. .+|.. .+..+++|++++|.++...+..+..+++|+.|++++|.+.+..+..+..+++
T Consensus 10 ~~~~l~~s~n~l~-~ip~~---------~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~ 79 (170)
T 3g39_A 10 SGTTVDCSGKSLA-SVPTG---------IPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQ 79 (170)
T ss_dssp ETTEEECTTSCCS-SCCSC---------CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTT
T ss_pred CCCEEEeCCCCcC-ccCcc---------CCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCC
Confidence 4567788887776 34442 1356788888888877766777777888888888888887655566677888
Q ss_pred cCEEEeeCCcccCCcChhhhcCCCccEEEccccccccC
Q 042000 189 VESLDLSNNKLNGKIPHQLVELKTLAIFSVAYNNLSGE 226 (249)
Q Consensus 189 L~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 226 (249)
|++|++++|.+.+..+..+..+++|+.|++++|.+...
T Consensus 80 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 80 LTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred CCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 88888888888766666677788888888888877643
No 129
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.59 E-value=8.4e-15 Score=104.98 Aligned_cols=103 Identities=18% Similarity=0.236 Sum_probs=54.0
Q ss_pred ccceEEcccCeecccCCcccCCCCCccEEeCCCCCCccCCchhccCCcccCEEEeeCCcccCCcCh--hhhcCCCccEEE
Q 042000 140 LLSGLDLSCNKLISHIPPQIGNLTRIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPH--QLVELKTLAIFS 217 (249)
Q Consensus 140 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~--~~~~~~~L~~L~ 217 (249)
+|++|++++|.+++. ..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+. .++. .+..+++|+.|+
T Consensus 43 ~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~ 119 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLC 119 (176)
T ss_dssp CCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEE
T ss_pred CCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEE
Confidence 455555555554443 34455555666666666555333333355555666666666554 2333 455555666666
Q ss_pred ccccccccCCChh----hhhhcccccccccCCc
Q 042000 218 VAYNNLSGEIPEW----TAQFATFNESSYEGNT 246 (249)
Q Consensus 218 l~~n~l~~~~~~~----~~~~~~l~~l~l~~n~ 246 (249)
+++|.++ .+|.. +..+++|+.+++++|+
T Consensus 120 l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 120 ILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CCSSGGG-GSTTHHHHHHHHCTTCSEETTEECC
T ss_pred ecCCCCC-CcHhHHHHHHHHCCccceeCCCcCC
Confidence 6666555 33332 4555556655555553
No 130
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.58 E-value=4.4e-16 Score=134.66 Aligned_cols=181 Identities=21% Similarity=0.181 Sum_probs=99.8
Q ss_pred CcccEEEccCccCCCCCCccccCCCCCCe-----EEccCccccccccccccccCCCCeEeCCCCcCcCccceEEeccccc
Q 042000 21 TNLRWLQLDGNHFVGENPQSLSKCSSLEG-----LYLNNNSLSGKIPRWLGNLTRLNHIIMPENHLEGLIPILDISDNNI 95 (249)
Q Consensus 21 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~-----L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~l~~~~~ 95 (249)
+.++.|++.++.+... +..+.....|.. +++..+.+. ..+..+..+.+|+.|++++|.+.
T Consensus 173 ~~~~~l~L~~n~~~~~-~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~------------- 237 (727)
T 4b8c_D 173 PLTPKIELFANGKDEA-NQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF------------- 237 (727)
T ss_dssp ---------------------------------------------------CCCCCCEEECTTSCCS-------------
T ss_pred CccceEEeeCCCCCcc-hhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-------------
Confidence 5577788877776642 322222222222 223333333 45667788888888888888877
Q ss_pred cccCCCCCcCCCCCccEEEccCccccccCCCcchhhhcccchhcccceEEcccCeecccCCcccCCCCCccEEeCCCCCC
Q 042000 96 SGRLPSCTFSNCSSLVTLDLSYNRINGSIPEWNIAYIYQGKVLSLLSGLDLSCNKLISHIPPQIGNLTRIETLNLSHNNL 175 (249)
Q Consensus 96 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 175 (249)
.++. .+..+++|++|++++|.+. .+|.. ...+.+|++|++++|.++ ..|..++.+++|+.|++++|.+
T Consensus 238 --~l~~-~~~~l~~L~~L~Ls~N~l~-~lp~~-------~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l 305 (727)
T 4b8c_D 238 --NISA-NIFKYDFLTRLYLNGNSLT-ELPAE-------IKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMV 305 (727)
T ss_dssp --CCCG-GGGGCCSCSCCBCTTSCCS-CCCGG-------GGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCC
T ss_pred --CCCh-hhcCCCCCCEEEeeCCcCc-ccChh-------hhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCC
Confidence 5555 3447788999999998887 55542 234778889999999887 4677788888999999999988
Q ss_pred ccCCchhccCCcccCEEEeeCCcccCCcChhhhcCCC-ccEEEccccccccCCCh
Q 042000 176 TGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKT-LAIFSVAYNNLSGEIPE 229 (249)
Q Consensus 176 ~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~ 229 (249)
. .+|..+..+++|+.|++++|.+.+..|..+..... ...+++++|.+++.+|.
T Consensus 306 ~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~ 359 (727)
T 4b8c_D 306 T-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH 359 (727)
T ss_dssp C-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_pred C-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc
Confidence 7 67777888889999999999888766666543211 11244555555544443
No 131
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.58 E-value=6.6e-15 Score=102.57 Aligned_cols=61 Identities=21% Similarity=0.231 Sum_probs=39.3
Q ss_pred cCCCCCccEEeCCCCCCccC-CchhccCCcccCEEEeeCCcccCCcC---hhhhcCCCccEEEcc
Q 042000 159 IGNLTRIETLNLSHNNLTGS-IPSTFSNLKHVESLDLSNNKLNGKIP---HQLVELKTLAIFSVA 219 (249)
Q Consensus 159 l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~l~l~~n~~~~~~~---~~~~~~~~L~~L~l~ 219 (249)
+..+++|+.|++++|.+.+. .+..+..+++|++|++++|.+.+..+ ..+..+++|+.|+++
T Consensus 84 ~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 84 AEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp HHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred hhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 33456677777777766632 22556667777777777777765444 466777777777765
No 132
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.58 E-value=4.3e-14 Score=101.35 Aligned_cols=81 Identities=22% Similarity=0.320 Sum_probs=53.7
Q ss_pred ccEEEccCccCCCCCCccccCCCCCCeEEccCccccccccccccccCCCCeEeCCCCcCcCccceEEeccccccccCCCC
Q 042000 23 LRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPENHLEGLIPILDISDNNISGRLPSC 102 (249)
Q Consensus 23 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~l~~~~~~~~~~~~ 102 (249)
.+.++++++++.. +|..+ .++|++|++++|.+....+..+..+++|++|++++|.+. .++..
T Consensus 9 ~~~l~~~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~---------------~~~~~ 70 (177)
T 2o6r_A 9 GTEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ---------------SLPDG 70 (177)
T ss_dssp TTEEECCSSCCSS-CCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC---------------CCCTT
T ss_pred CCEEEecCCCCcc-CCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcce---------------EeChh
Confidence 3567777777663 33322 357778888877777555556677778888887777766 44443
Q ss_pred CcCCCCCccEEEccCcccc
Q 042000 103 TFSNCSSLVTLDLSYNRIN 121 (249)
Q Consensus 103 ~~~~l~~L~~L~l~~~~~~ 121 (249)
.+..+++|++|++++|.+.
T Consensus 71 ~~~~l~~L~~L~l~~N~l~ 89 (177)
T 2o6r_A 71 VFDKLTKLTILYLHENKLQ 89 (177)
T ss_dssp TTTTCTTCCEEECCSSCCC
T ss_pred HccCCCccCEEECCCCCcc
Confidence 5667777777777777654
No 133
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.57 E-value=1.9e-14 Score=102.90 Aligned_cols=106 Identities=22% Similarity=0.264 Sum_probs=80.0
Q ss_pred ccEEEccCccccccCCCcchhhhcccchhcccceEEcccCeecccCCcccCCCCCccEEeCCCCCCccCCchhccCCccc
Q 042000 110 LVTLDLSYNRINGSIPEWNIAYIYQGKVLSLLSGLDLSCNKLISHIPPQIGNLTRIETLNLSHNNLTGSIPSTFSNLKHV 189 (249)
Q Consensus 110 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 189 (249)
-+.++++++.+. .+|.. .+.+|++|++++|.+....+..+..+++|+.|++++|.+.+..+..+..+++|
T Consensus 14 ~~~l~~~~n~l~-~iP~~---------~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L 83 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPAG---------IPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQL 83 (174)
T ss_dssp SSEEECCSSCCS-SCCSC---------CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CcEEEeCCCCCC-ccCCC---------cCCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchh
Confidence 467788887775 55542 13668888888888877667778888888888888888886555566778888
Q ss_pred CEEEeeCCcccCCcChhhhcCCCccEEEcccccccc
Q 042000 190 ESLDLSNNKLNGKIPHQLVELKTLAIFSVAYNNLSG 225 (249)
Q Consensus 190 ~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 225 (249)
+.|++++|.+.+..+..+..+++|+.|++++|.+..
T Consensus 84 ~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 84 TQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred hEEECCCCccceeCHHHhccccCCCEEEeCCCCccc
Confidence 888888888886555667788888888888888773
No 134
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.55 E-value=3.6e-16 Score=132.61 Aligned_cols=86 Identities=13% Similarity=0.071 Sum_probs=54.6
Q ss_pred CCCCccEEeCCCCCCccCCchhcc-CCcccCEEEeeCCcccCCcChhh-hcCCCccEEEccccccccCCCh-hhhhhccc
Q 042000 161 NLTRIETLNLSHNNLTGSIPSTFS-NLKHVESLDLSNNKLNGKIPHQL-VELKTLAIFSVAYNNLSGEIPE-WTAQFATF 237 (249)
Q Consensus 161 ~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~l~l~~n~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~-~~~~~~~l 237 (249)
.+++|+.|++++ .+++..+..+. .+++|+.|++++|.+++.....+ ..+++|+.|++++|.+++..+. ....+++|
T Consensus 430 ~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L 508 (594)
T 2p1m_B 430 HCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETM 508 (594)
T ss_dssp HCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGS
T ss_pred hCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCC
Confidence 345566666655 33322222332 26778888888888765544444 6688888888888887544333 33457888
Q ss_pred ccccccCCcc
Q 042000 238 NESSYEGNTF 247 (249)
Q Consensus 238 ~~l~l~~n~~ 247 (249)
+.+++++|+.
T Consensus 509 ~~L~l~~~~~ 518 (594)
T 2p1m_B 509 RSLWMSSCSV 518 (594)
T ss_dssp SEEEEESSCC
T ss_pred CEEeeeCCCC
Confidence 8888888864
No 135
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.53 E-value=3e-16 Score=133.07 Aligned_cols=62 Identities=13% Similarity=0.147 Sum_probs=28.9
Q ss_pred CCCcccEEEccCccCCCCCCcccc-CCCCCCeEEccCc-ccccc-ccccccccCCCCeEeCCCCc
Q 042000 19 NLTNLRWLQLDGNHFVGENPQSLS-KCSSLEGLYLNNN-SLSGK-IPRWLGNLTRLNHIIMPENH 80 (249)
Q Consensus 19 ~~~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~-~~~~~-~~~~~~~l~~L~~L~l~~~~ 80 (249)
.+++|++|++++|.+.+..+..+. .+++|++|++++| .+... ++..+..+++|++|++++|.
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~ 167 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD 167 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc
Confidence 345555666655554433333333 3555555555555 22211 22223345555555555544
No 136
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.52 E-value=1.8e-13 Score=110.37 Aligned_cols=213 Identities=10% Similarity=0.063 Sum_probs=99.7
Q ss_pred CCCCCCCCcccEEEccCccCCCCCCccccCCCCCCeEEccCccccccccccccccCCCCeEeCCCCcCcCc---------
Q 042000 14 FPRNFNLTNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPENHLEGL--------- 84 (249)
Q Consensus 14 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--------- 84 (249)
..+|.++ +|+.+.+..+ +......+|.++ +|+.+.+.. .+......+|.++.+|+.+++..|.+...
T Consensus 129 ~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~ 204 (401)
T 4fdw_A 129 KDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAG 204 (401)
T ss_dssp TTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCC
T ss_pred HhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEeecc
Confidence 4444454 5666666544 443444455553 566666654 34434445666666666666665544321
Q ss_pred cceEEeccccccccCCCCCcCCCCCccEEEccCccccccCCCcchhhhcccchhcccceEEcccCeecccCCcccCCCCC
Q 042000 85 IPILDISDNNISGRLPSCTFSNCSSLVTLDLSYNRINGSIPEWNIAYIYQGKVLSLLSGLDLSCNKLISHIPPQIGNLTR 164 (249)
Q Consensus 85 ~~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~ 164 (249)
+..+.+..+ +. .++...|..+.+|+.+.+..+- . .++...+.. .+|+.+.+..+ ++......|..|++
T Consensus 205 L~~l~lp~~-l~-~I~~~aF~~~~~L~~l~l~~~l-~-~I~~~aF~~-------~~L~~i~lp~~-i~~I~~~aF~~c~~ 272 (401)
T 4fdw_A 205 IEEVLLPVT-LK-EIGSQAFLKTSQLKTIEIPENV-S-TIGQEAFRE-------SGITTVKLPNG-VTNIASRAFYYCPE 272 (401)
T ss_dssp CSEEECCTT-CC-EECTTTTTTCTTCCCEECCTTC-C-EECTTTTTT-------CCCSEEEEETT-CCEECTTTTTTCTT
T ss_pred cCEEEeCCc-hh-eehhhHhhCCCCCCEEecCCCc-c-Ccccccccc-------CCccEEEeCCC-ccEEChhHhhCCCC
Confidence 222333221 22 4455567777777777776532 1 222221110 23455554222 23333444555555
Q ss_pred ccEEeCCCCCCc-----cCCchhccCCcccCEEEeeCCcccCCcChhhhcCCCccEEEccccccccCCChhhhhhccccc
Q 042000 165 IETLNLSHNNLT-----GSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLAIFSVAYNNLSGEIPEWTAQFATFNE 239 (249)
Q Consensus 165 L~~L~l~~~~~~-----~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~ 239 (249)
|+.+.+.++.+. ...+.+|.++++|+.+.+.. .+......+|..+++|+.+++..+ ++..-...|..+ +|+.
T Consensus 273 L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~ 349 (401)
T 4fdw_A 273 LAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKE 349 (401)
T ss_dssp CCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCE
T ss_pred CCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCE
Confidence 555555444432 12234444555555555542 233334444555555555555332 332233344444 4555
Q ss_pred ccccCC
Q 042000 240 SSYEGN 245 (249)
Q Consensus 240 l~l~~n 245 (249)
+.+.+|
T Consensus 350 l~l~~n 355 (401)
T 4fdw_A 350 VKVEGT 355 (401)
T ss_dssp EEECCS
T ss_pred EEEcCC
Confidence 554443
No 137
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.52 E-value=4.7e-14 Score=101.08 Aligned_cols=133 Identities=20% Similarity=0.251 Sum_probs=85.6
Q ss_pred cccCCCCCCeEEccCccccccccccccccC-CCCeEeCCCCcCcCccceEEeccccccccCCCCCcCCCCCccEEEccCc
Q 042000 40 SLSKCSSLEGLYLNNNSLSGKIPRWLGNLT-RLNHIIMPENHLEGLIPILDISDNNISGRLPSCTFSNCSSLVTLDLSYN 118 (249)
Q Consensus 40 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 118 (249)
.+.++.+|++|++++|.+. .++. +..+. +|++|++++|.+. .+ . .+..+++|++|++++|
T Consensus 14 ~~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~---------------~~-~-~l~~l~~L~~L~Ls~N 74 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIR---------------KL-D-GFPLLRRLKTLLVNNN 74 (176)
T ss_dssp EEECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCC---------------EE-C-CCCCCSSCCEEECCSS
T ss_pred hcCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCC---------------cc-c-ccccCCCCCEEECCCC
Confidence 3556677777777777776 3333 33333 6777777666655 22 1 3444555555555555
Q ss_pred cccccCCCcchhhhcccchhcccceEEcccCeecccCCcccCCCCCccEEeCCCCCCccCCch--hccCCcccCEEEeeC
Q 042000 119 RINGSIPEWNIAYIYQGKVLSLLSGLDLSCNKLISHIPPQIGNLTRIETLNLSHNNLTGSIPS--TFSNLKHVESLDLSN 196 (249)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~--~~~~~~~L~~l~l~~ 196 (249)
.+ +...+..+..+++|+.|++++|.+. .+|. .+..+++|+.+++++
T Consensus 75 ~l-------------------------------~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~ 122 (176)
T 1a9n_A 75 RI-------------------------------CRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILR 122 (176)
T ss_dssp CC-------------------------------CEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCS
T ss_pred cc-------------------------------cccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecC
Confidence 44 3333333456677888888888876 4554 667788888888888
Q ss_pred CcccCCcCh----hhhcCCCccEEEccccccc
Q 042000 197 NKLNGKIPH----QLVELKTLAIFSVAYNNLS 224 (249)
Q Consensus 197 n~~~~~~~~----~~~~~~~L~~L~l~~n~l~ 224 (249)
|++.+ .+. .+..+++|+.||++.|...
T Consensus 123 N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 123 NPVTN-KKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp SGGGG-STTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCCCC-cHhHHHHHHHHCCccceeCCCcCCHH
Confidence 88873 444 4778888888888888765
No 138
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.51 E-value=1.5e-13 Score=97.85 Aligned_cols=104 Identities=25% Similarity=0.274 Sum_probs=85.4
Q ss_pred CeEeeccccCCCCCCCCCCCCcccEEEccCccCCCCCCccccCCCCCCeEEccCccccccccccccccCCCCeEeCCCCc
Q 042000 1 SLVLSNNSLNGHMFPRNFNLTNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPENH 80 (249)
Q Consensus 1 ~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 80 (249)
++++++|.++ .+|..+. +++++|++++|.+.+..+..|.++++|++|++++|.+....+..|..+++|++|++++|.
T Consensus 13 ~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~ 89 (170)
T 3g39_A 13 TVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89 (170)
T ss_dssp EEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc
Confidence 3688888887 5666664 788999999999987778888889999999999999886666677889999999999988
Q ss_pred CcCccceEEeccccccccCCCCCcCCCCCccEEEccCccccc
Q 042000 81 LEGLIPILDISDNNISGRLPSCTFSNCSSLVTLDLSYNRING 122 (249)
Q Consensus 81 ~~~~~~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 122 (249)
++ .++...+..+++|++|++++|.+..
T Consensus 90 l~---------------~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 90 LK---------------SIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp CC---------------CCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred cC---------------EeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 87 5555568888899999999988763
No 139
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.49 E-value=2.4e-13 Score=97.13 Aligned_cols=102 Identities=25% Similarity=0.335 Sum_probs=80.4
Q ss_pred eEeeccccCCCCCCCCCCCCcccEEEccCccCCCCCCccccCCCCCCeEEccCccccccccccccccCCCCeEeCCCCcC
Q 042000 2 LVLSNNSLNGHMFPRNFNLTNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPENHL 81 (249)
Q Consensus 2 l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 81 (249)
++++++.++ .+|..+. ++|++|++++|.+.+..+..|+++++|++|++++|.+....+..|..+++|++|++++|.+
T Consensus 17 l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l 93 (174)
T 2r9u_A 17 VNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHL 93 (174)
T ss_dssp EECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCcc
Confidence 677888886 6666664 7888888888888877777888888888888888888855455577888888888888887
Q ss_pred cCccceEEeccccccccCCCCCcCCCCCccEEEccCcccc
Q 042000 82 EGLIPILDISDNNISGRLPSCTFSNCSSLVTLDLSYNRIN 121 (249)
Q Consensus 82 ~~~~~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 121 (249)
. .++...+..+++|++|++++|.+.
T Consensus 94 ~---------------~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 94 K---------------SIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp C---------------CCCTTTTTTCTTCSEEECCSSCBC
T ss_pred c---------------eeCHHHhccccCCCEEEeCCCCcc
Confidence 7 555546778888888888888876
No 140
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.49 E-value=7.7e-13 Score=106.71 Aligned_cols=213 Identities=10% Similarity=0.097 Sum_probs=116.2
Q ss_pred CCCCCCCCcccEEEccCccCCCCCCccccCCCCCCeEEccCccccccccccccccCCCCeEeCCCCcCcC----------
Q 042000 14 FPRNFNLTNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPENHLEG---------- 83 (249)
Q Consensus 14 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~---------- 83 (249)
..+|.++ +|+.+.+.. .+......+|.+|.+|+.+++.++.+......+|. ..+|+.+.+..+ +..
T Consensus 151 ~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~ 226 (401)
T 4fdw_A 151 DMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTS 226 (401)
T ss_dssp TTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCT
T ss_pred HHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCC
Confidence 3344443 455555554 33333444555555555555555544422222332 344444444322 110
Q ss_pred ccceEEeccccccccCCCCCcCCCCCccEEEccCccccccCCCcchhhhcccchhcccceEEcccCeec-----ccCCcc
Q 042000 84 LIPILDISDNNISGRLPSCTFSNCSSLVTLDLSYNRINGSIPEWNIAYIYQGKVLSLLSGLDLSCNKLI-----SHIPPQ 158 (249)
Q Consensus 84 ~~~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-----~~~~~~ 158 (249)
.+..+.+..+ +. .++...|.. .+|+.+.+..+- . .++.. .+..+.+|+.+++.++... ......
T Consensus 227 ~L~~l~l~~~-l~-~I~~~aF~~-~~L~~i~lp~~i-~-~I~~~------aF~~c~~L~~l~l~~~~~~~~~~~~I~~~a 295 (401)
T 4fdw_A 227 QLKTIEIPEN-VS-TIGQEAFRE-SGITTVKLPNGV-T-NIASR------AFYYCPELAEVTTYGSTFNDDPEAMIHPYC 295 (401)
T ss_dssp TCCCEECCTT-CC-EECTTTTTT-CCCSEEEEETTC-C-EECTT------TTTTCTTCCEEEEESSCCCCCTTCEECTTT
T ss_pred CCCEEecCCC-cc-Ccccccccc-CCccEEEeCCCc-c-EEChh------HhhCCCCCCEEEeCCccccCCcccEECHHH
Confidence 1222333221 11 444445555 677777775432 1 22221 1233667888888776543 345567
Q ss_pred cCCCCCccEEeCCCCCCccCCchhccCCcccCEEEeeCCcccCCcChhhhcCCCccEEEccccccccCCChhhhhhc-cc
Q 042000 159 IGNLTRIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLAIFSVAYNNLSGEIPEWTAQFA-TF 237 (249)
Q Consensus 159 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~-~l 237 (249)
|..|++|+.+.+.. .+......+|.++.+|+.+.+..+ +......+|..+ +|+.+++.+|.........+.+++ .+
T Consensus 296 F~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l 372 (401)
T 4fdw_A 296 LEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDI 372 (401)
T ss_dssp TTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTC
T ss_pred hhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCc
Confidence 77788888888874 455455667778888888888554 554566777777 888888888876644445555553 44
Q ss_pred ccccccC
Q 042000 238 NESSYEG 244 (249)
Q Consensus 238 ~~l~l~~ 244 (249)
+.+.+..
T Consensus 373 ~~l~vp~ 379 (401)
T 4fdw_A 373 TVIRVPA 379 (401)
T ss_dssp CEEEECG
T ss_pred cEEEeCH
Confidence 4554443
No 141
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.46 E-value=9e-16 Score=112.21 Aligned_cols=82 Identities=23% Similarity=0.258 Sum_probs=50.6
Q ss_pred cccceEEcccCeecccCCcccCCCCCccEEeCCCCCCccCCc-hhccCCcccCEEEeeCCcccCCcCh----------hh
Q 042000 139 SLLSGLDLSCNKLISHIPPQIGNLTRIETLNLSHNNLTGSIP-STFSNLKHVESLDLSNNKLNGKIPH----------QL 207 (249)
Q Consensus 139 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~l~l~~n~~~~~~~~----------~~ 207 (249)
++|++|++++|.++.. + .+..+++|+.|++++|.+.+..+ ..+..+++|+++++++|++.+..|. .+
T Consensus 93 ~~L~~L~L~~N~l~~l-~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~ 170 (198)
T 1ds9_A 93 DTLEELWISYNQIASL-S-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVV 170 (198)
T ss_dssp HHCSEEEEEEEECCCH-H-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHH
T ss_pred CcCCEEECcCCcCCcC-C-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHH
Confidence 4555566666555442 2 35556677777777777763221 3566777777777777777644332 36
Q ss_pred hcCCCccEEEccccccc
Q 042000 208 VELKTLAIFSVAYNNLS 224 (249)
Q Consensus 208 ~~~~~L~~L~l~~n~l~ 224 (249)
..+++|+.|| ++.++
T Consensus 171 ~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 171 KRLPNLKKLD--GMPVD 185 (198)
T ss_dssp HHCSSCSEEC--CGGGT
T ss_pred HhCCCcEEEC--CcccC
Confidence 7788888887 55554
No 142
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.45 E-value=4.9e-16 Score=113.62 Aligned_cols=130 Identities=24% Similarity=0.225 Sum_probs=94.9
Q ss_pred CcCCCCCccEEEccCccccccCCCcchhhhcccchhcccceEEcccCeecccCCcccCCCCCccEEeCCCCCCccCCchh
Q 042000 103 TFSNCSSLVTLDLSYNRINGSIPEWNIAYIYQGKVLSLLSGLDLSCNKLISHIPPQIGNLTRIETLNLSHNNLTGSIPST 182 (249)
Q Consensus 103 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 182 (249)
.+..+++|++|++++|.+.+ +| ....+++|++|++++|.++. .+..+..+++|+.|++++|.+.+ +| .
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~--------~~~~l~~L~~L~l~~n~l~~-l~~~~~~~~~L~~L~L~~N~l~~-l~-~ 110 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS--------SLSGMENLRILSLGRNLIKK-IENLDAVADTLEELWISYNQIAS-LS-G 110 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC--------CHHHHTTCCEEEEEEEEECS-CSSHHHHHHHCSEEEEEEEECCC-HH-H
T ss_pred HHhcCCCCCEEECCCCCCcc-cc--------ccccCCCCCEEECCCCCccc-ccchhhcCCcCCEEECcCCcCCc-CC-c
Confidence 34455566666666666552 22 11235677778887777764 55556667899999999999984 55 5
Q ss_pred ccCCcccCEEEeeCCcccCCcC-hhhhcCCCccEEEccccccccCCCh----------hhhhhcccccccccCCc
Q 042000 183 FSNLKHVESLDLSNNKLNGKIP-HQLVELKTLAIFSVAYNNLSGEIPE----------WTAQFATFNESSYEGNT 246 (249)
Q Consensus 183 ~~~~~~L~~l~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~----------~~~~~~~l~~l~l~~n~ 246 (249)
+..+++|+.|++++|.+.+..+ ..+..+++|+.|++++|.+.+..|. .+..+++|+.++ +|+
T Consensus 111 ~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~ 183 (198)
T 1ds9_A 111 IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMP 183 (198)
T ss_dssp HHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGG
T ss_pred cccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--Ccc
Confidence 7788999999999999985332 5788899999999999999765443 367888898876 555
No 143
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.38 E-value=9.2e-15 Score=116.80 Aligned_cols=172 Identities=17% Similarity=0.193 Sum_probs=95.7
Q ss_pred CCCCCeEEccCcccccccccccccc-----CCCCeEeCCCCcCcCccceEEeccccccccCCCCCcCCCCCccEEEccCc
Q 042000 44 CSSLEGLYLNNNSLSGKIPRWLGNL-----TRLNHIIMPENHLEGLIPILDISDNNISGRLPSCTFSNCSSLVTLDLSYN 118 (249)
Q Consensus 44 l~~L~~L~l~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 118 (249)
++.|++|++++|.++......+... ++|++|++++|.++..- +.. ....+++|++|++++|
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~-------------~~~-l~~~L~~L~~L~Ls~n 136 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAG-------------LRT-LLPVFLRARKLGLQLN 136 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHH-------------HHH-THHHHHTEEEEECCSS
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHH-------------HHH-HHHHHHhccHhhcCCC
Confidence 3567777777776653333333322 46777777776654210 000 1223345777777777
Q ss_pred cccccCCCcchhhhccc--chhcccceEEcccCeeccc----CCcccCCCCCccEEeCCCCCCccC----CchhccCCcc
Q 042000 119 RINGSIPEWNIAYIYQG--KVLSLLSGLDLSCNKLISH----IPPQIGNLTRIETLNLSHNNLTGS----IPSTFSNLKH 188 (249)
Q Consensus 119 ~~~~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~ 188 (249)
.+.... ...+... .....|++|++++|.+++. .+..+...++|++|++++|.+.+. ++..+...++
T Consensus 137 ~l~~~~----~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~ 212 (372)
T 3un9_A 137 SLGPEA----CKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQ 212 (372)
T ss_dssp CCCHHH----HHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSC
T ss_pred CCCHHH----HHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCC
Confidence 664211 1111110 1235677777777776542 222334566777788877777632 2445556667
Q ss_pred cCEEEeeCCcccCC----cChhhhcCCCccEEEccccccccCCChhhhh
Q 042000 189 VESLDLSNNKLNGK----IPHQLVELKTLAIFSVAYNNLSGEIPEWTAQ 233 (249)
Q Consensus 189 L~~l~l~~n~~~~~----~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 233 (249)
|++|++++|.+++. +...+...++|++|++++|.+++.....+..
T Consensus 213 L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~ 261 (372)
T 3un9_A 213 LQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRD 261 (372)
T ss_dssp CCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHH
T ss_pred cCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHH
Confidence 77888887777653 3344455677788888877776554444443
No 144
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.37 E-value=1.7e-12 Score=102.99 Aligned_cols=86 Identities=20% Similarity=0.186 Sum_probs=45.4
Q ss_pred hcccceEEccc-CeecccCCcccCCCCCccEEeCCCCCCccCCchhccCCcccCEEEeeCCcccCCcChhhhcCCCccEE
Q 042000 138 LSLLSGLDLSC-NKLISHIPPQIGNLTRIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLAIF 216 (249)
Q Consensus 138 ~~~L~~L~l~~-~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L 216 (249)
+.+|++|++++ |.+....+..|..+++|+.|++++|.+.+..|..|..+++|+.|++++|.+.+..+..+..++ |+.|
T Consensus 30 ~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l 108 (347)
T 2ifg_A 30 AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQEL 108 (347)
T ss_dssp CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEE
T ss_pred CCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEE
Confidence 34455555554 555544444555555555555555555554455555555555555555555543333333333 5555
Q ss_pred Eccccccc
Q 042000 217 SVAYNNLS 224 (249)
Q Consensus 217 ~l~~n~l~ 224 (249)
++++|.+.
T Consensus 109 ~l~~N~~~ 116 (347)
T 2ifg_A 109 VLSGNPLH 116 (347)
T ss_dssp ECCSSCCC
T ss_pred EeeCCCcc
Confidence 55555554
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.34 E-value=7.2e-14 Score=111.66 Aligned_cols=163 Identities=18% Similarity=0.172 Sum_probs=116.9
Q ss_pred cCCCCeEeCCCCcCcCccceEEeccccccccCCCCCcC-CCCCccEEEccCccccccCCCcchhhhcccchhcccceEEc
Q 042000 68 LTRLNHIIMPENHLEGLIPILDISDNNISGRLPSCTFS-NCSSLVTLDLSYNRINGSIPEWNIAYIYQGKVLSLLSGLDL 146 (249)
Q Consensus 68 l~~L~~L~l~~~~~~~~~~~l~l~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l 146 (249)
.++|+.|++++|.++..... .+.. .+. ..+.|++|++++|.+.... ... ....+.+|++|++
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~----------~l~~-~L~~~~~~L~~L~Ls~n~l~~~~----~~~--l~~~L~~L~~L~L 133 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCT----------VVAA-VLGSGRHALDEVNLASCQLDPAG----LRT--LLPVFLRARKLGL 133 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHH----------HHHH-HHSSCSSCEEEEECTTCCCCHHH----HHH--THHHHHTEEEEEC
T ss_pred HhhCCEEEecCCCCCHHHHH----------HHHH-HHhhCCCCceEEEecCCCCCHHH----HHH--HHHHHHhccHhhc
Confidence 46789999999887632110 1111 222 3368999999999875211 111 1123567999999
Q ss_pred ccCeecccCCccc-----CCCCCccEEeCCCCCCcc----CCchhccCCcccCEEEeeCCcccCCc----ChhhhcCCCc
Q 042000 147 SCNKLISHIPPQI-----GNLTRIETLNLSHNNLTG----SIPSTFSNLKHVESLDLSNNKLNGKI----PHQLVELKTL 213 (249)
Q Consensus 147 ~~~~~~~~~~~~l-----~~~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~l~l~~n~~~~~~----~~~~~~~~~L 213 (249)
++|.+++.....+ ...++|++|++++|.++. .++..+...++|++|++++|.+.+.. ...+...++|
T Consensus 134 s~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L 213 (372)
T 3un9_A 134 QLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQL 213 (372)
T ss_dssp CSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCC
T ss_pred CCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCc
Confidence 9999866443333 245789999999999973 24455678899999999999998643 5667778999
Q ss_pred cEEEccccccccC----CChhhhhhcccccccccCCcc
Q 042000 214 AIFSVAYNNLSGE----IPEWTAQFATFNESSYEGNTF 247 (249)
Q Consensus 214 ~~L~l~~n~l~~~----~~~~~~~~~~l~~l~l~~n~~ 247 (249)
+.|++++|.+++. ++..+...++|+.|++++|++
T Consensus 214 ~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i 251 (372)
T 3un9_A 214 QELNVAYNGAGDTAALALARAAREHPSLELLHLYFNEL 251 (372)
T ss_dssp CEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSC
T ss_pred CeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCC
Confidence 9999999999854 344455679999999999975
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.32 E-value=1.1e-11 Score=98.20 Aligned_cols=103 Identities=23% Similarity=0.199 Sum_probs=88.8
Q ss_pred eEeecc-ccCCCCCCCCCCCCcccEEEccC-ccCCCCCCccccCCCCCCeEEccCccccccccccccccCCCCeEeCCCC
Q 042000 2 LVLSNN-SLNGHMFPRNFNLTNLRWLQLDG-NHFVGENPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPEN 79 (249)
Q Consensus 2 l~l~~~-~l~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 79 (249)
++.+++ .++ .+|. +..+++|++|+|++ |.+.+..+..|+++.+|++|+|++|.+.+..+.+|..+++|++|++++|
T Consensus 13 v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 13 LRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp EECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 677787 888 5777 99999999999996 9998777788999999999999999999888889999999999999999
Q ss_pred cCcCccceEEeccccccccCCCCCcCCCCCccEEEccCccccc
Q 042000 80 HLEGLIPILDISDNNISGRLPSCTFSNCSSLVTLDLSYNRING 122 (249)
Q Consensus 80 ~~~~~~~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 122 (249)
.++ .++...+..+. |+.|++.+|.+..
T Consensus 91 ~l~---------------~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 91 ALE---------------SLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp CCS---------------CCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred ccc---------------eeCHHHcccCC-ceEEEeeCCCccC
Confidence 988 55554555555 9999999998763
No 147
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.00 E-value=6.8e-11 Score=93.84 Aligned_cols=70 Identities=20% Similarity=0.318 Sum_probs=38.9
Q ss_pred CCCccEEeCCCCCCccCCchhc---cCCcccCEEEeeCCcccCCc----ChhhhcCCCccEEEccccccccCCChhh
Q 042000 162 LTRIETLNLSHNNLTGSIPSTF---SNLKHVESLDLSNNKLNGKI----PHQLVELKTLAIFSVAYNNLSGEIPEWT 231 (249)
Q Consensus 162 ~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~l~l~~n~~~~~~----~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 231 (249)
+++|+.|++.+|.+....+..+ ..+++|++|+++.|.+.+.. +..+..+++|+.|++++|.++......+
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l 327 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKEL 327 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHH
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHH
Confidence 5667777776666653222111 24566777777777666432 2223445677777777776654433333
No 148
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.98 E-value=1.1e-08 Score=82.42 Aligned_cols=215 Identities=13% Similarity=0.079 Sum_probs=99.7
Q ss_pred CCCCCCCCcccEEEccCccCCCCCCccccCCCCCCeEEccCccccccccccccccCCCCeEeCCCCcCc--------Ccc
Q 042000 14 FPRNFNLTNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPENHLE--------GLI 85 (249)
Q Consensus 14 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~--------~~~ 85 (249)
..+|.+|++|+.+.+..+- ......+|.++.+|+.+.+..+ +......+|.++..|+.+.+..+... ..+
T Consensus 155 ~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~i~~~~~~~~~l 232 (394)
T 4fs7_A 155 DEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYYLGDFALSKTGV 232 (394)
T ss_dssp TTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCCC
T ss_pred hhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceEeehhhcccCCC
Confidence 3455667777777776542 2234456667777777777654 33344456666666666655443211 012
Q ss_pred ceEEeccccccccCCCCCcCCCCCccEEEccCccccccCCCcchhh---------------hcccchhcccceEEcccCe
Q 042000 86 PILDISDNNISGRLPSCTFSNCSSLVTLDLSYNRINGSIPEWNIAY---------------IYQGKVLSLLSGLDLSCNK 150 (249)
Q Consensus 86 ~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~---------------~~~~~~~~~L~~L~l~~~~ 150 (249)
..+.+.... . .+....+..+..++.+.+..+... +....+.. -..+..+.+|+.+.+..+
T Consensus 233 ~~i~ip~~~-~-~i~~~~f~~~~~l~~~~~~~~~~~--i~~~~F~~~~~l~~~~~~~~~i~~~~F~~~~~L~~i~l~~~- 307 (394)
T 4fs7_A 233 KNIIIPDSF-T-ELGKSVFYGCTDLESISIQNNKLR--IGGSLFYNCSGLKKVIYGSVIVPEKTFYGCSSLTEVKLLDS- 307 (394)
T ss_dssp CEEEECTTC-C-EECSSTTTTCSSCCEEEECCTTCE--ECSCTTTTCTTCCEEEECSSEECTTTTTTCTTCCEEEECTT-
T ss_pred ceEEECCCc-e-ecccccccccccceeEEcCCCcce--eeccccccccccceeccCceeeccccccccccccccccccc-
Confidence 222221111 0 222334555566666665543221 11100000 000112344555555433
Q ss_pred ecccCCcccCCCCCccEEeCCCCCCccCCchhccCCcccCEEEeeCCcccCCcChhhhcCCCccEEEccccccccCCChh
Q 042000 151 LISHIPPQIGNLTRIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLAIFSVAYNNLSGEIPEW 230 (249)
Q Consensus 151 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 230 (249)
+......+|..+++|+.+++..+ ++.....+|.++.+|+.+.+..+ +......+|..+++|+.+++..+ +. .+...
T Consensus 308 i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~ 383 (394)
T 4fs7_A 308 VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYD 383 (394)
T ss_dssp CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGG
T ss_pred cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-Ehhhe
Confidence 22333344555566666665433 33233445556666666666544 43344555666666666665433 11 12233
Q ss_pred hhhhccccc
Q 042000 231 TAQFATFNE 239 (249)
Q Consensus 231 ~~~~~~l~~ 239 (249)
+..+++|+.
T Consensus 384 F~~c~~L~~ 392 (394)
T 4fs7_A 384 FEDTTKFKW 392 (394)
T ss_dssp BCTTCEEEE
T ss_pred ecCCCCCcE
Confidence 445555543
No 149
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.98 E-value=8.5e-10 Score=87.57 Aligned_cols=84 Identities=18% Similarity=0.220 Sum_probs=47.2
Q ss_pred hhcccceEEcccCeecccCCccc---CCCCCccEEeCCCCCCccCC----chhccCCcccCEEEeeCCcccCCcChhhhc
Q 042000 137 VLSLLSGLDLSCNKLISHIPPQI---GNLTRIETLNLSHNNLTGSI----PSTFSNLKHVESLDLSNNKLNGKIPHQLVE 209 (249)
Q Consensus 137 ~~~~L~~L~l~~~~~~~~~~~~l---~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~ 209 (249)
.+++|+.|++.+|.+.+.....+ ..+++|++|+++.|.+.+.. +..+..+++|+.|+++.|.+++.....+..
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~ 329 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK 329 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHH
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHH
Confidence 35677777777766543221111 23567777777777766322 222234567777777777776554444443
Q ss_pred -CCCccEEEccccc
Q 042000 210 -LKTLAIFSVAYNN 222 (249)
Q Consensus 210 -~~~L~~L~l~~n~ 222 (249)
+ ...++++.++
T Consensus 330 al--g~~~~~~~~~ 341 (362)
T 2ra8_A 330 SL--PMKIDVSDSQ 341 (362)
T ss_dssp HC--CSEEECCSBC
T ss_pred Hc--CCEEEecCCc
Confidence 2 2446666655
No 150
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.86 E-value=1.2e-07 Score=76.35 Aligned_cols=103 Identities=13% Similarity=0.207 Sum_probs=59.3
Q ss_pred cccceEEcccCeecccCCcccCCCCCccEEeCCCCCCccCCchhccCCcccCEEEeeCCcccCCcChhhhcCCCccEEEc
Q 042000 139 SLLSGLDLSCNKLISHIPPQIGNLTRIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLAIFSV 218 (249)
Q Consensus 139 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~l 218 (249)
..|+.+.+..+. .......+..++.|+.+.+.. .+......+|.++.+|+.+.+..+ +......+|..|.+|+.+.+
T Consensus 265 ~~L~~i~lp~~~-~~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~i 341 (394)
T 4gt6_A 265 AYLASVKMPDSV-VSIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAI 341 (394)
T ss_dssp SSCCEEECCTTC-CEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEE
T ss_pred ccccEEeccccc-ceecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEE
Confidence 344555544332 122334455556666666543 233233456667777777777654 44345567777777777777
Q ss_pred cccccccCCChhhhhhcccccccccCC
Q 042000 219 AYNNLSGEIPEWTAQFATFNESSYEGN 245 (249)
Q Consensus 219 ~~n~l~~~~~~~~~~~~~l~~l~l~~n 245 (249)
-.+ ++..-..+|.+|++|+.+.+.++
T Consensus 342 p~s-v~~I~~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 342 PSS-VTKIPESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp CTT-CCBCCGGGGTTCTTCCEEEESSC
T ss_pred Ccc-cCEEhHhHhhCCCCCCEEEECCc
Confidence 543 44344556777777777777665
No 151
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.77 E-value=1.1e-07 Score=76.69 Aligned_cols=188 Identities=16% Similarity=0.121 Sum_probs=111.0
Q ss_pred CCCCCCCCCCcccEEEccCccCCCCCCccccCCCCCCeEEccCcccc---------------------ccccccccccCC
Q 042000 12 HMFPRNFNLTNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNNNSLS---------------------GKIPRWLGNLTR 70 (249)
Q Consensus 12 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~---------------------~~~~~~~~~l~~ 70 (249)
....+|.+|.+|+.+.+..+ +......+|.++..|+.+.+..+... .....+|..+..
T Consensus 176 I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~i~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~ 254 (394)
T 4fs7_A 176 LHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYYLGDFALSKTGVKNIIIPDSFTELGKSVFYGCTD 254 (394)
T ss_dssp ECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCCCCEEEECTTCCEECSSTTTTCSS
T ss_pred eccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceEeehhhcccCCCceEEECCCceeccccccccccc
Confidence 34556678888888888765 33344456667777766666543211 111223344445
Q ss_pred CCeEeCCCCcCcC---------ccceEEeccccccccCCCCCcCCCCCccEEEccCccccccCCCcchhhhcccchhccc
Q 042000 71 LNHIIMPENHLEG---------LIPILDISDNNISGRLPSCTFSNCSSLVTLDLSYNRINGSIPEWNIAYIYQGKVLSLL 141 (249)
Q Consensus 71 L~~L~l~~~~~~~---------~~~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L 141 (249)
++.+.+..+...- .+..+..... .++...+..+.+|+.+.+..+- . .+++. .+..+.+|
T Consensus 255 l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~----~i~~~~F~~~~~L~~i~l~~~i-~-~I~~~------aF~~c~~L 322 (394)
T 4fs7_A 255 LESISIQNNKLRIGGSLFYNCSGLKKVIYGSV----IVPEKTFYGCSSLTEVKLLDSV-K-FIGEE------AFESCTSL 322 (394)
T ss_dssp CCEEEECCTTCEECSCTTTTCTTCCEEEECSS----EECTTTTTTCTTCCEEEECTTC-C-EECTT------TTTTCTTC
T ss_pred ceeEEcCCCcceeeccccccccccceeccCce----eecccccccccccccccccccc-c-eechh------hhcCCCCC
Confidence 5555444332110 0111111111 1233356667777777776542 1 22222 12346789
Q ss_pred ceEEcccCeecccCCcccCCCCCccEEeCCCCCCccCCchhccCCcccCEEEeeCCcccCCcChhhhcCCCccEE
Q 042000 142 SGLDLSCNKLISHIPPQIGNLTRIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLAIF 216 (249)
Q Consensus 142 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L 216 (249)
+.+++..+ ++.....+|..|++|+.+.+..+ ++.....+|.++.+|+.+++..+ +. .....+..+++|+.+
T Consensus 323 ~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 323 VSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp CEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred CEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence 99999755 55566678899999999999876 55456678999999999999865 22 234567778887764
No 152
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.72 E-value=5e-07 Score=72.75 Aligned_cols=103 Identities=6% Similarity=0.103 Sum_probs=72.3
Q ss_pred hhcccceEEcccCeecccCCcccCCCCCccEEeCCCCCCccCCchhccCCcccCEEEeeCCcccCCcChhhhcCCCccEE
Q 042000 137 VLSLLSGLDLSCNKLISHIPPQIGNLTRIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLAIF 216 (249)
Q Consensus 137 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L 216 (249)
.+..|+.+.+... +.......|..|.+|+.+.+..+ ++.....+|.++.+|+.+.+..+ +......+|..|.+|+.+
T Consensus 286 ~c~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i 362 (394)
T 4gt6_A 286 NCPALQDIEFSSR-ITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNI 362 (394)
T ss_dssp TCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEE
T ss_pred cccccccccCCCc-ccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEE
Confidence 3567888888643 44556677888999999999865 44355678999999999999755 665778899999999999
Q ss_pred EccccccccCCChhhhhhcccccccccCC
Q 042000 217 SVAYNNLSGEIPEWTAQFATFNESSYEGN 245 (249)
Q Consensus 217 ~l~~n~l~~~~~~~~~~~~~l~~l~l~~n 245 (249)
++.++.... ..+..+..|+.+.+..+
T Consensus 363 ~~~~~~~~~---~~~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 363 EYSGSRSQW---NAISTDSGLQNLPVAPG 388 (394)
T ss_dssp EESSCHHHH---HTCBCCCCC--------
T ss_pred EECCceeeh---hhhhccCCCCEEEeCCC
Confidence 999875431 33556677887777654
No 153
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.69 E-value=3.4e-09 Score=76.18 Aligned_cols=119 Identities=15% Similarity=0.175 Sum_probs=77.7
Q ss_pred CcCCCCCccEEEccCc-cccccCCCcchhhhcccchhcccceEEcccCeecccCC----cccCCCCCccEEeCCCCCCcc
Q 042000 103 TFSNCSSLVTLDLSYN-RINGSIPEWNIAYIYQGKVLSLLSGLDLSCNKLISHIP----PQIGNLTRIETLNLSHNNLTG 177 (249)
Q Consensus 103 ~~~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~l~~~~~L~~L~l~~~~~~~ 177 (249)
.+...+.|++|++++| .+...... .........+.|++|++++|.+.+... ..+...++|++|++++|.+..
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~---~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~ 107 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLK---ACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG 107 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHH---HHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHH---HHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence 4566788999999888 66521111 111111234678888888888755322 233344678888888888873
Q ss_pred C----CchhccCCcccCEEEe--eCCcccCC----cChhhhcCCCccEEEccccccc
Q 042000 178 S----IPSTFSNLKHVESLDL--SNNKLNGK----IPHQLVELKTLAIFSVAYNNLS 224 (249)
Q Consensus 178 ~----~~~~~~~~~~L~~l~l--~~n~~~~~----~~~~~~~~~~L~~L~l~~n~l~ 224 (249)
. +..++...++|++|++ ++|.+.+. +...+...++|++|++++|.+.
T Consensus 108 ~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 108 SGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 2 3455666778888888 77888753 3455566688888888888775
No 154
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.66 E-value=8.4e-09 Score=72.69 Aligned_cols=87 Identities=13% Similarity=0.148 Sum_probs=68.4
Q ss_pred cccceEEcccCeecccCCcccCCCCCccEEeCCCCC-CccCCchhccCC----cccCEEEeeCC-cccCCcChhhhcCCC
Q 042000 139 SLLSGLDLSCNKLISHIPPQIGNLTRIETLNLSHNN-LTGSIPSTFSNL----KHVESLDLSNN-KLNGKIPHQLVELKT 212 (249)
Q Consensus 139 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~----~~L~~l~l~~n-~~~~~~~~~~~~~~~ 212 (249)
..|++||++++.+++.....+..+++|++|++++|. +++..-..+... ++|++|++++| .+++.....+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 358888888888877777778889999999999995 664444444443 57999999998 488877777888999
Q ss_pred ccEEEccccc-ccc
Q 042000 213 LAIFSVAYNN-LSG 225 (249)
Q Consensus 213 L~~L~l~~n~-l~~ 225 (249)
|++|++++|. +++
T Consensus 141 L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 141 LKYLFLSDLPGVKE 154 (176)
T ss_dssp CCEEEEESCTTCCC
T ss_pred CCEEECCCCCCCCc
Confidence 9999999984 553
No 155
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.64 E-value=1.3e-08 Score=71.78 Aligned_cols=85 Identities=12% Similarity=0.103 Sum_probs=71.4
Q ss_pred CCccEEeCCCCCCccCCchhccCCcccCEEEeeCCc-ccCCcChhhhcC----CCccEEEcccc-ccccCCChhhhhhcc
Q 042000 163 TRIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNK-LNGKIPHQLVEL----KTLAIFSVAYN-NLSGEIPEWTAQFAT 236 (249)
Q Consensus 163 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~-~~~~~~~~~~~~----~~L~~L~l~~n-~l~~~~~~~~~~~~~ 236 (249)
..|++|++++|.++......+..+++|++|++++|. +++.....+..+ ++|++|++++| .+++.....+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 479999999999986666677899999999999994 877666666664 58999999999 588766667788999
Q ss_pred cccccccCCcc
Q 042000 237 FNESSYEGNTF 247 (249)
Q Consensus 237 l~~l~l~~n~~ 247 (249)
|+.|++++++.
T Consensus 141 L~~L~L~~c~~ 151 (176)
T 3e4g_A 141 LKYLFLSDLPG 151 (176)
T ss_dssp CCEEEEESCTT
T ss_pred CCEEECCCCCC
Confidence 99999999874
No 156
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.64 E-value=2.5e-06 Score=68.26 Aligned_cols=104 Identities=14% Similarity=0.113 Sum_probs=62.7
Q ss_pred hcccceEEcccCeecccCCcccCCCCCccEEeCCCCCCccCCchhccCCcccCEEEeeCCcccCCcChhhhcCCCccEEE
Q 042000 138 LSLLSGLDLSCNKLISHIPPQIGNLTRIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLAIFS 217 (249)
Q Consensus 138 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~ 217 (249)
+..|+.+.+..+ ++......+..+.+|+.+.+..+ +......+|..+.+|+.+.+.++.+......+|..+.+|+.++
T Consensus 239 ~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~ 316 (379)
T 4h09_A 239 MKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVT 316 (379)
T ss_dssp CSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEE
T ss_pred CccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEE
Confidence 344555555443 23333445555666666666543 3323345667777788888777766656667777777888887
Q ss_pred ccccccccCCChhhhhhcccccccccC
Q 042000 218 VAYNNLSGEIPEWTAQFATFNESSYEG 244 (249)
Q Consensus 218 l~~n~l~~~~~~~~~~~~~l~~l~l~~ 244 (249)
+..+ ++..-..+|..|.+|+.+.+..
T Consensus 317 lp~~-l~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 317 LPTA-LKTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp CCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred cCcc-ccEEHHHHhhCCCCCCEEEECC
Confidence 7643 4433455677777777766543
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.62 E-value=5.1e-09 Score=75.27 Aligned_cols=109 Identities=12% Similarity=0.146 Sum_probs=63.5
Q ss_pred hcccceEEcccC-eeccc----CCcccCCCCCccEEeCCCCCCccC----CchhccCCcccCEEEeeCCcccCC----cC
Q 042000 138 LSLLSGLDLSCN-KLISH----IPPQIGNLTRIETLNLSHNNLTGS----IPSTFSNLKHVESLDLSNNKLNGK----IP 204 (249)
Q Consensus 138 ~~~L~~L~l~~~-~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~l~l~~n~~~~~----~~ 204 (249)
.+.|++|++++| .+.+. ....+...++|++|++++|.+... +...+...++|++|++++|.+.+. +.
T Consensus 35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~ 114 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV 114 (185)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHH
Confidence 455777777776 55432 222334456677777777776532 233444556677777777776643 34
Q ss_pred hhhhcCCCccEEEc--cccccccC----CChhhhhhcccccccccCCc
Q 042000 205 HQLVELKTLAIFSV--AYNNLSGE----IPEWTAQFATFNESSYEGNT 246 (249)
Q Consensus 205 ~~~~~~~~L~~L~l--~~n~l~~~----~~~~~~~~~~l~~l~l~~n~ 246 (249)
..+...++|++|++ ++|.++.. +...+...++|+.+++++|.
T Consensus 115 ~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 115 EALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 44555667777777 66666643 23334445667777776664
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.39 E-value=4.7e-07 Score=68.47 Aligned_cols=79 Identities=24% Similarity=0.346 Sum_probs=55.3
Q ss_pred CCCCccEEeCCCCCCcc--CCchhccCCcccCEEEeeCCcccCCcChhhhcCC--CccEEEccccccccCCC-------h
Q 042000 161 NLTRIETLNLSHNNLTG--SIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELK--TLAIFSVAYNNLSGEIP-------E 229 (249)
Q Consensus 161 ~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~--~L~~L~l~~n~l~~~~~-------~ 229 (249)
.+++|+.|++++|.+.+ .++..+..+++|+.|++++|.+.+. ..+..+. +|++|++++|.+.+..| .
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 46788888888888875 3345566788888888888888753 2233333 88888888888876554 2
Q ss_pred hhhhhccccccc
Q 042000 230 WTAQFATFNESS 241 (249)
Q Consensus 230 ~~~~~~~l~~l~ 241 (249)
.+..+++|+.|+
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 356777777765
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.18 E-value=1.5e-06 Score=65.71 Aligned_cols=80 Identities=24% Similarity=0.275 Sum_probs=60.9
Q ss_pred hhcccceEEcccCeecc--cCCcccCCCCCccEEeCCCCCCccCC-chhccCCcccCEEEeeCCcccCCcC-------hh
Q 042000 137 VLSLLSGLDLSCNKLIS--HIPPQIGNLTRIETLNLSHNNLTGSI-PSTFSNLKHVESLDLSNNKLNGKIP-------HQ 206 (249)
Q Consensus 137 ~~~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~l~l~~n~~~~~~~-------~~ 206 (249)
.++.|+.|++++|.+.. ..+..+..+++|+.|++++|.+.+.. ...+..+ +|++|++++|++.+..+ ..
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHHH
Confidence 46789999999999876 33455567899999999999998531 1223333 89999999999986544 34
Q ss_pred hhcCCCccEEE
Q 042000 207 LVELKTLAIFS 217 (249)
Q Consensus 207 ~~~~~~L~~L~ 217 (249)
+..+|+|+.||
T Consensus 247 l~~~P~L~~LD 257 (267)
T 3rw6_A 247 RERFPKLLRLD 257 (267)
T ss_dssp HHHCTTCCEES
T ss_pred HHHCcccCeEC
Confidence 67889999987
No 160
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.08 E-value=4.9e-05 Score=60.67 Aligned_cols=199 Identities=11% Similarity=0.049 Sum_probs=118.7
Q ss_pred cCCCCCCCCCCCCcccEEEccCccCCC------------CCCccccCCCCCCeEEccCccccccccccccccCCCCeEeC
Q 042000 9 LNGHMFPRNFNLTNLRWLQLDGNHFVG------------ENPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIM 76 (249)
Q Consensus 9 l~~~~~~~~~~~~~L~~L~l~~~~~~~------------~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 76 (249)
++.....++.++.+++...+....... .....+.....+..+.+..... .....++....+++.+.+
T Consensus 146 v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~f~~~~~l~~i~~ 224 (379)
T 4h09_A 146 VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEFTIPSTVK-TVTAYGFSYGKNLKKITI 224 (379)
T ss_dssp CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEEECCTTCC-EECTTTTTTCSSCSEEEC
T ss_pred eeccccchhcccccccccccccccceeecccceecccccceecccccccccccccccccee-EEeecccccccccceeee
Confidence 333446677888888888776543221 1112233455666666554322 244456667777877776
Q ss_pred CCCcCcCccceEEeccccccccCCCCCcCCCCCccEEEccCccccccCCCcchhhhcccchhcccceEEcccCeecccCC
Q 042000 77 PENHLEGLIPILDISDNNISGRLPSCTFSNCSSLVTLDLSYNRINGSIPEWNIAYIYQGKVLSLLSGLDLSCNKLISHIP 156 (249)
Q Consensus 77 ~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 156 (249)
..+- . .+....+..+..|+.+.+..+- . .+.+. .+..+..|+.+.+..+ +.....
T Consensus 225 ~~~~-~---------------~i~~~~f~~~~~L~~i~lp~~v-~-~I~~~------aF~~~~~l~~i~l~~~-i~~i~~ 279 (379)
T 4h09_A 225 TSGV-T---------------TLGDGAFYGMKALDEIAIPKNV-T-SIGSF------LLQNCTALKTLNFYAK-VKTVPY 279 (379)
T ss_dssp CTTC-C---------------EECTTTTTTCSSCCEEEECTTC-C-EECTT------TTTTCTTCCEEEECCC-CSEECT
T ss_pred ccce-e---------------EEccccccCCccceEEEcCCCc-c-EeCcc------ccceeehhcccccccc-ceeccc
Confidence 5431 1 3333366677778887776542 1 12121 1122456777776543 344455
Q ss_pred cccCCCCCccEEeCCCCCCccCCchhccCCcccCEEEeeCCcccCCcChhhhcCCCccEEEccccccccCCChhhhhhc
Q 042000 157 PQIGNLTRIETLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLAIFSVAYNNLSGEIPEWTAQFA 235 (249)
Q Consensus 157 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~ 235 (249)
..+..|++|+.+.+.++.++.....+|.++.+|+.+.+..+ +......+|..+.+|+.+.+..+ ++..-..+|.++.
T Consensus 280 ~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~ 356 (379)
T 4h09_A 280 LLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSS 356 (379)
T ss_dssp TTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred cccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence 66777888888888887777555667888888888888654 44455677888888888877544 4433344555543
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.88 E-value=1.7e-05 Score=53.14 Aligned_cols=56 Identities=25% Similarity=0.312 Sum_probs=35.7
Q ss_pred EEeCCCCCCc-cCCchhccCCcccCEEEeeCCcccCCcChhhhcCCCccEEEccccccc
Q 042000 167 TLNLSHNNLT-GSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLAIFSVAYNNLS 224 (249)
Q Consensus 167 ~L~l~~~~~~-~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~ 224 (249)
.++.+++.++ ..+|..+ ..+++.|++++|.++...++.+..+++|+.|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5667776665 2344322 235777777777777655666677777777777777553
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.80 E-value=6.9e-06 Score=58.94 Aligned_cols=119 Identities=11% Similarity=0.114 Sum_probs=72.4
Q ss_pred CcCCCCCccEEEccCc-cccccCCCcchhhhcccchhcccceEEcccCeecccCCcccC----CCCCccEEeCCCCCCcc
Q 042000 103 TFSNCSSLVTLDLSYN-RINGSIPEWNIAYIYQGKVLSLLSGLDLSCNKLISHIPPQIG----NLTRIETLNLSHNNLTG 177 (249)
Q Consensus 103 ~~~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~----~~~~L~~L~l~~~~~~~ 177 (249)
.+..-+.|++|+++++ .+...- .............|+.|++++|.+.+.....+. .=+.|++|++++|.|..
T Consensus 36 ll~~n~~L~~L~L~~nn~igd~g---a~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~ 112 (197)
T 1pgv_A 36 LREDDTDLKEVNINNMKRVSKER---IRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTP 112 (197)
T ss_dssp HHTTCSSCCEEECTTCCSSCHHH---HHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCH
T ss_pred HHhcCCCccEEECCCCCCCCHHH---HHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCH
Confidence 3445567888888875 543110 001111122345688888888887664433333 33678888888888873
Q ss_pred ----CCchhccCCcccCEEEeeCC---cccC----CcChhhhcCCCccEEEccccccc
Q 042000 178 ----SIPSTFSNLKHVESLDLSNN---KLNG----KIPHQLVELKTLAIFSVAYNNLS 224 (249)
Q Consensus 178 ----~~~~~~~~~~~L~~l~l~~n---~~~~----~~~~~~~~~~~L~~L~l~~n~l~ 224 (249)
.+..++.....|++|+++++ .+.+ .+.+.+..-+.|+.|+++.+...
T Consensus 113 ~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 113 ELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred HHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 23445666777888888755 3332 23455666788888888877654
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.58 E-value=3.6e-05 Score=55.20 Aligned_cols=109 Identities=9% Similarity=0.119 Sum_probs=79.9
Q ss_pred hcccceEEcccC-eeccc----CCcccCCCCCccEEeCCCCCCcc----CCchhccCCcccCEEEeeCCcccCC----cC
Q 042000 138 LSLLSGLDLSCN-KLISH----IPPQIGNLTRIETLNLSHNNLTG----SIPSTFSNLKHVESLDLSNNKLNGK----IP 204 (249)
Q Consensus 138 ~~~L~~L~l~~~-~~~~~----~~~~l~~~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~l~l~~n~~~~~----~~ 204 (249)
-..|++|+++++ .+.+. ..+.+..-+.|+.|++++|.+.. .+..++.....|++|++++|.|.+. +.
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala 119 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL 119 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence 457999999985 66442 23344455789999999999973 4456667789999999999999864 34
Q ss_pred hhhhcCCCccEEEcccc---ccccC----CChhhhhhcccccccccCCc
Q 042000 205 HQLVELKTLAIFSVAYN---NLSGE----IPEWTAQFATFNESSYEGNT 246 (249)
Q Consensus 205 ~~~~~~~~L~~L~l~~n---~l~~~----~~~~~~~~~~l~~l~l~~n~ 246 (249)
+.+..-+.|++|++++| .+... +.+.+..-++|+.+++..|.
T Consensus 120 ~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 120 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 55666788999999865 44432 44556667889988887653
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.13 E-value=0.0011 Score=44.30 Aligned_cols=56 Identities=18% Similarity=0.208 Sum_probs=30.0
Q ss_pred EEEccCccCC-CCCCccccCCCCCCeEEccCccccccccccccccCCCCeEeCCCCcCc
Q 042000 25 WLQLDGNHFV-GENPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPENHLE 82 (249)
Q Consensus 25 ~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 82 (249)
.++-+++.++ ..+|..+ -.+|++|+|++|.++...+..|..+++|++|++.+|++.
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 4555555553 1233221 224666666666666444445566666666666666654
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=88.10 E-value=1.1 Score=27.97 Aligned_cols=45 Identities=22% Similarity=0.135 Sum_probs=21.7
Q ss_pred cCCCCCCCCCCCCcccEEEccCccCCCCCCccccCCCCCCeEEccC
Q 042000 9 LNGHMFPRNFNLTNLRWLQLDGNHFVGENPQSLSKCSSLEGLYLNN 54 (249)
Q Consensus 9 l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 54 (249)
++.....+|.+|..|+.+.+-.+ ++.+...+|.+|.+|+.+.+..
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 44444445555555555555442 2223334555555555555543
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=85.41 E-value=1.4 Score=27.44 Aligned_cols=49 Identities=14% Similarity=0.243 Sum_probs=37.3
Q ss_pred CccCCCCCCccccCCCCCCeEEccCccccccccccccccCCCCeEeCCCC
Q 042000 30 GNHFVGENPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLNHIIMPEN 79 (249)
Q Consensus 30 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 79 (249)
+..++.+...+|.+|..|+.+.+..+ ++.....+|.++.+|+.+.+...
T Consensus 5 g~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 5 GEPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred CCccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 33455556678999999999999864 55466678999999999888664
Done!