Query 042001
Match_columns 670
No_of_seqs 274 out of 810
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 12:58:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042001.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042001hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03000 NPH3: NPH3 family; I 100.0 2.9E-85 6.3E-90 672.6 18.6 246 215-466 1-258 (258)
2 KOG4441 Proteins containing BT 99.9 1.4E-21 3.1E-26 222.0 17.9 242 9-332 7-258 (571)
3 PHA02713 hypothetical protein; 99.8 1.2E-19 2.6E-24 205.8 15.6 128 16-165 3-139 (557)
4 PHA02790 Kelch-like protein; P 99.8 1.5E-19 3.3E-24 201.4 10.4 116 33-166 16-137 (480)
5 PHA03098 kelch-like protein; P 99.8 5.6E-18 1.2E-22 189.7 15.9 111 36-165 6-121 (534)
6 PF00651 BTB: BTB/POZ domain; 99.6 1.1E-15 2.4E-20 135.3 9.1 98 33-139 4-110 (111)
7 smart00225 BTB Broad-Complex, 99.5 3.7E-14 8.1E-19 118.2 6.8 84 41-133 1-90 (90)
8 KOG2075 Topoisomerase TOP1-int 99.2 1.5E-10 3.3E-15 126.8 11.6 133 30-176 105-248 (521)
9 KOG4350 Uncharacterized conser 98.8 9.5E-09 2E-13 110.9 6.9 104 30-142 35-147 (620)
10 KOG4591 Uncharacterized conser 98.6 1.4E-07 3E-12 94.3 7.6 117 32-165 59-182 (280)
11 KOG4682 Uncharacterized conser 98.4 8.6E-07 1.9E-11 96.2 8.6 119 32-167 62-188 (488)
12 KOG0783 Uncharacterized conser 98.2 1.4E-06 3.1E-11 100.7 6.5 60 37-99 556-633 (1267)
13 KOG0783 Uncharacterized conser 98.0 8.8E-06 1.9E-10 94.4 7.3 121 41-177 712-846 (1267)
14 PF11822 DUF3342: Domain of un 97.7 3.9E-05 8.4E-10 82.1 4.3 92 42-141 1-105 (317)
15 PF02214 BTB_2: BTB/POZ domain 96.2 0.0088 1.9E-07 52.5 5.6 76 42-121 1-88 (94)
16 smart00512 Skp1 Found in Skp1 96.2 0.01 2.2E-07 53.6 5.9 74 42-119 4-104 (104)
17 KOG2716 Polymerase delta-inter 95.7 0.056 1.2E-06 56.1 9.3 90 42-141 7-106 (230)
18 KOG2838 Uncharacterized conser 94.0 0.059 1.3E-06 57.0 4.2 86 30-118 121-217 (401)
19 KOG3473 RNA polymerase II tran 93.8 0.2 4.4E-06 45.6 6.6 69 47-119 25-112 (112)
20 PF03931 Skp1_POZ: Skp1 family 90.4 0.86 1.9E-05 37.6 6.1 52 42-97 3-59 (62)
21 KOG3840 Uncharaterized conserv 90.1 1.7 3.8E-05 46.9 9.5 107 34-142 90-222 (438)
22 KOG1724 SCF ubiquitin ligase, 88.6 1 2.2E-05 44.6 6.1 86 47-142 13-129 (162)
23 KOG0511 Ankyrin repeat protein 88.5 0.12 2.6E-06 56.9 -0.4 98 12-119 129-231 (516)
24 KOG2838 Uncharacterized conser 88.1 0.57 1.2E-05 49.8 4.3 53 50-104 262-330 (401)
25 PF04508 Pox_A_type_inc: Viral 75.4 3.5 7.7E-05 28.3 2.8 19 562-580 2-20 (23)
26 KOG0511 Ankyrin repeat protein 70.7 5 0.00011 44.7 4.2 102 49-157 301-413 (516)
27 TIGR01834 PHA_synth_III_E poly 67.7 6.3 0.00014 43.1 4.2 29 560-588 288-316 (320)
28 PF14077 WD40_alt: Alternative 64.2 4.3 9.4E-05 32.3 1.6 20 564-583 14-33 (48)
29 PF01466 Skp1: Skp1 family, di 63.2 6.9 0.00015 33.8 2.8 35 101-141 10-44 (78)
30 COG5201 SKP1 SCF ubiquitin lig 61.3 32 0.00068 33.3 7.0 88 45-141 8-123 (158)
31 PF14363 AAA_assoc: Domain ass 55.8 7.8 0.00017 34.9 2.0 42 419-461 30-71 (98)
32 KOG2714 SETA binding protein S 54.1 33 0.00072 39.0 6.8 76 42-121 13-99 (465)
33 KOG4571 Activating transcripti 46.5 30 0.00064 37.5 4.8 38 553-590 254-291 (294)
34 KOG1665 AFH1-interacting prote 41.6 86 0.0019 33.2 7.1 83 42-134 11-105 (302)
35 PF01166 TSC22: TSC-22/dip/bun 37.8 55 0.0012 27.5 4.1 32 553-584 13-44 (59)
36 PF09712 PHA_synth_III_E: Poly 34.7 29 0.00063 37.5 2.6 23 560-582 271-293 (293)
37 PF10929 DUF2811: Protein of u 32.0 31 0.00067 28.8 1.8 19 428-446 8-26 (57)
38 PF08172 CASP_C: CASP C termin 29.8 33 0.00072 36.3 2.1 39 564-605 89-127 (248)
39 KOG2715 Uncharacterized conser 28.0 1.9E+02 0.0042 29.4 6.8 94 37-139 18-121 (210)
40 COG3937 Uncharacterized conser 27.0 69 0.0015 30.0 3.3 26 560-585 82-107 (108)
41 PF11123 DNA_Packaging_2: DNA 25.8 47 0.001 29.3 1.9 16 428-443 31-46 (82)
42 PF07716 bZIP_2: Basic region 25.5 1.8E+02 0.004 23.2 5.2 31 557-587 21-51 (54)
43 PF06825 HSBP1: Heat shock fac 25.1 46 0.001 27.5 1.6 25 558-582 25-49 (54)
44 KOG4343 bZIP transcription fac 24.0 73 0.0016 37.3 3.5 24 560-583 301-324 (655)
45 PHA01750 hypothetical protein 23.7 1.5E+02 0.0033 25.6 4.5 33 554-586 42-74 (75)
46 KOG1987 Speckle-type POZ prote 22.7 43 0.00093 35.2 1.4 85 48-141 109-202 (297)
47 PF12001 DUF3496: Domain of un 22.6 78 0.0017 29.8 2.8 19 565-583 4-22 (111)
48 PF09593 Pathogen_betaC1: Beta 22.5 1.5E+02 0.0033 28.1 4.8 72 47-119 20-95 (117)
49 PF10932 DUF2783: Protein of u 20.6 78 0.0017 26.8 2.1 21 427-450 10-30 (60)
No 1
>PF03000 NPH3: NPH3 family; InterPro: IPR004249 The RPT2 protein is a signal transducer of the phototropic response in Arabidopsis thaliana. The RPT2 gene is light inducible; encodes a novel protein with putative phosphorylation sites, a nuclear localization signal, a BTB/POZ domain (IPR000210 from INTERPRO), and a coiled-coil domain. RPT2 belongs to a large gene family that includes the recently isolated NPH3 gene []. The NPH3 protein is a NPH1 photoreceptor-interacting protein that is essential for phototropism. Phototropism of A. thaliana seedlings in response to a blue light source is initiated by nonphototropic hypocotyl 1 (NPH1), a light-activated serine-threonine protein kinase []. NPH3 is a member of a large protein family, apparently specific to higher plants, and may function as an adapter or scaffold protein to bring together the enzymatic components of a NPH1-activated phosphorelay []. Many of the proteins in this group also contain the BTB/POZ domain (IPR000210 from INTERPRO) at the N-terminal.; GO: 0004871 signal transducer activity, 0009416 response to light stimulus
Probab=100.00 E-value=2.9e-85 Score=672.63 Aligned_cols=246 Identities=34% Similarity=0.620 Sum_probs=218.9
Q ss_pred cchhhhhhccCChHHHHHHHHHHHHcCCCCcchhHHHHHHHHHhhccccccccccCCCCCCCCccccccchhHHHHHHhc
Q 042001 215 QELWIKDLLALPFGFFRRIIGSLRRQGMKEKYVNPIIVFYANKWLLYKKTRQFWENSDDKSGDKDTNSKCSEILQGILDL 294 (670)
Q Consensus 215 ~dWW~eDL~~L~~dlf~rvI~am~~kg~~~~~I~~~l~~YA~kwl~~~~~~~~~~~s~~~~~~~~~~~k~r~lLEtiV~l 294 (670)
+|||||||+.|++|+|+|||.+|+++||++++||++|++||+||||+.++. .+..............++|.+||+||+|
T Consensus 1 ~dWW~eDl~~L~id~f~rvi~a~~~~~~~~~~I~~~l~~Ya~k~l~~~~~~-~~~~~~~~~~~~~~~~~~r~llEtiV~l 79 (258)
T PF03000_consen 1 KDWWFEDLSELSIDLFKRVISAMKSKGMKPEVIGEALMHYAKKWLPGLSRS-SSGSSSSAESSTSSENEQRELLETIVSL 79 (258)
T ss_pred CCccHHHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcccc-cccccccccccchhHHHHHHHHHHHHHh
Confidence 589999999999999999999999999999999999999999999997543 2111111222334456789999999999
Q ss_pred CCccccCCCcccHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhhccccccccccc-CCCCCccCCcchHHHHHHHHHhh
Q 042001 295 LPLQEKASRVIPVGFYFALLSRSLEVGLRSDSRAKLQEQIASLLHFAQVEDFLFPA-TGTQSISSSXELIIMESIFSKYV 373 (670)
Q Consensus 295 LP~e~k~~~~vsc~FLf~LLr~A~~l~as~~cr~~LE~rIg~qLdqAtldDLLIP~-~~~~~~~~~~dVd~v~riv~~f~ 373 (670)
||++ + ++|||+|||+|||+|+++|+|++||.+||+|||+|||||||+|||||+ ..++ .++||||+|+|||++|+
T Consensus 80 LP~e-~--~svsc~FL~~LLr~A~~l~as~~cr~~Le~rIg~qLd~AtldDLLIP~~~~~~--~t~yDVd~V~riv~~Fl 154 (258)
T PF03000_consen 80 LPPE-K--GSVSCSFLFRLLRAAIMLGASSACRNELERRIGSQLDQATLDDLLIPSSPSGE--DTLYDVDLVQRIVEHFL 154 (258)
T ss_pred CCCC-C--CcccHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhhccHHHhcccCCCCcc--cchhhHHHHHHHHHHHH
Confidence 9997 4 799999999999999999999999999999999999999999999998 2222 36789999999999999
Q ss_pred hccc-----------CCCCCCCchhhhhHhchhhhhhhhcCCCCCChhHHHHHHHhcCCcccccchhHHHHHHHHHHHcc
Q 042001 374 SFNM-----------DTNHTPSASNSIVAELWDTFLCHITSDPKMEPKRFMELVETVPVSWRQSHDQLYRAMIIFLKAHR 442 (670)
Q Consensus 374 ~~~~-----------~~~~~~~~~~~~VakLvD~YLaEiA~D~nL~~~kF~~LAealP~~AR~~hDgLYRAIDiYLKaHp 442 (670)
..+. .+...+..++.+||||||+||+|||+|+||+|+||++|||+||++||++|||||||||||||+||
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~VakLvD~YLaEiA~D~~L~~~kF~~Lae~lP~~aR~~hD~LYrAID~YLk~Hp 234 (258)
T PF03000_consen 155 SQEEEAGEEEESESESGSSPSSSSLVKVAKLVDGYLAEIAPDPNLKPSKFVALAEALPDSARPSHDGLYRAIDIYLKAHP 234 (258)
T ss_pred hcccccccccccccccccCCChHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHCCHhhhhccchHHHHHHHHHHHcc
Confidence 8621 12234557899999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhcccccccccccCCHHHH
Q 042001 443 HLSQEEKGSVCKYLDCQKLSQEAC 466 (670)
Q Consensus 443 ~lse~Er~~lCr~ldc~KLS~EAc 466 (670)
+|||+||++||++|||||||+|||
T Consensus 235 ~ls~~Er~~lC~~ldc~KLS~EAC 258 (258)
T PF03000_consen 235 GLSEEERKRLCRLLDCQKLSPEAC 258 (258)
T ss_pred cCCHHHHHHHHhhCCcccCCcccC
Confidence 999999999999999999999998
No 2
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.87 E-value=1.4e-21 Score=222.04 Aligned_cols=242 Identities=24% Similarity=0.320 Sum_probs=176.9
Q ss_pred CCcccCCCCCccchH-HHHHHhHhhhhhcCCCeeEEEEECCeEEeeccchhcccchHHHhhhc------CCCeEEeCCCC
Q 042001 9 SSVASSPFSSPNISA-LLKIKIVSWSQETGLPVSIRVRVGNRTFNLHKFPLFSKSGYFKKRLN------ESNEYELPQHF 81 (670)
Q Consensus 9 ~~~~~~~~ss~~~~~-ll~~r~~~w~r~~g~~~DV~V~Vg~~~F~lHK~vLas~S~YFr~lfs------~~~~I~L~~d~ 81 (670)
.......|..+.|+. +|+ +.+-+|+.+.+|||+|.|++++|++||.|||++|+||++||+ .+.+|+|. ++
T Consensus 7 ~~~~~~~~~~~~h~~~~l~--~l~~lr~~~~lcDv~L~v~~~~~~aHR~VLAa~S~YFraMFt~~l~e~~~~~i~l~-~v 83 (571)
T KOG4441|consen 7 IFNSTSEFTDPSHSKFLLQ--GLNELREEGLLCDVTLLVGDREFPAHRVVLAACSPYFRAMFTSGLKESKQKEINLE-GV 83 (571)
T ss_pred ccccccccccHHHHHHHHH--HHHHHHHhCCCceEEEEECCeeechHHHHHHhccHHHHHHhcCCcccccceEEEEe-cC
Confidence 344557899999988 444 788899999999999999999999999999999999999994 46789997 88
Q ss_pred CCCHHHHHHHHHHHhcCccccccchHhhHHHHHhhcccccccccCcHHHHHHHHHHHhhhcc-hhh--HHHHHhhccchh
Q 042001 82 PGGPETFEMIVLFIYGSSTLIDPFNVTALRCAAEFLEMTEEYCSGNLCERFDLYLNQVVFQS-WDD--TLIVLQRCQTLL 158 (670)
Q Consensus 82 PGGaeaFElv~~FcYg~~i~It~~NV~~L~cAAe~LqMte~~~~~nL~~~ce~FL~~~v~~s-w~d--slavL~sC~~Ll 158 (670)
+ +++++++++|+||+++.|+.+||+.|+.||.+|||++ |++.|++||.+++.++ |.. .++.+++|.+|.
T Consensus 84 ~--~~~l~~ll~y~Yt~~i~i~~~nVq~ll~aA~~lQi~~------v~~~C~~fL~~~l~~~Nclgi~~~a~~~~~~~L~ 155 (571)
T KOG4441|consen 84 D--PETLELLLDYAYTGKLEISEDNVQELLEAASLLQIPE------VVDACCEFLESQLDPSNCLGIRRFAELHSCTELL 155 (571)
T ss_pred C--HHHHHHHHHHhhcceEEechHhHHHHHHHHHHhhhHH------HHHHHHHHHHhcCCHHHHHHHHHHHHhcCcHHHH
Confidence 8 9999999999999999999999999999999999974 9999999999999984 322 455556666666
Q ss_pred hhhHhhchHHHHHHHHHHHhhhhccCcccccCCCchhhhhhccccccccccCCcCCcchhhhhhccCChHHHHHHHHHHH
Q 042001 159 PSTEELLIVSRCIESLAFMACMEILDPERRREKPVVTLEALTSQAWCCERVKGIVSQELWIKDLLALPFGFFRRIIGSLR 238 (670)
Q Consensus 159 ~~Ae~l~Iv~RCidsLA~kAc~e~~~p~~~~~~P~~~~~~~~~~~~s~~~~~~~~~~dWW~eDL~~L~~dlf~rvI~am~ 238 (670)
+.|++ +|.+..++-.. -||...||.+.+..+|..-.
T Consensus 156 ~~a~~-~i~~~F~~v~~-------------------------------------------~eefl~L~~~~l~~ll~~d~ 191 (571)
T KOG4441|consen 156 EVADE-YILQHFAEVSK-------------------------------------------TEEFLLLSLEELIGLLSSDD 191 (571)
T ss_pred HHHHH-HHHHHHHHHhc-------------------------------------------cHHhhCCCHHHHHhhccccC
Confidence 66665 23433333111 23555677777776666544
Q ss_pred HcCCCCcchhHHHHHHHHHhhccccccccccCCCCCCCCccccccchhHHHHHHhcCCccccCCCcccHHHHHHHHHHHH
Q 042001 239 RQGMKEKYVNPIIVFYANKWLLYKKTRQFWENSDDKSGDKDTNSKCSEILQGILDLLPLQEKASRVIPVGFYFALLSRSL 318 (670)
Q Consensus 239 ~kg~~~~~I~~~l~~YA~kwl~~~~~~~~~~~s~~~~~~~~~~~k~r~lLEtiV~lLP~e~k~~~~vsc~FLf~LLr~A~ 318 (670)
-..-+++.|. ..+-+|+...... .....-.+++. |.+ ..+|-.||.......-
T Consensus 192 l~v~~E~~vf----~a~~~Wv~~d~~~--------------R~~~~~~ll~~-vr~--------~ll~~~~l~~~v~~~~ 244 (571)
T KOG4441|consen 192 LNVDSEEEVF----EAAMRWVKHDFEE--------------REEHLPALLEA-VRL--------PLLPPQFLVEIVESEP 244 (571)
T ss_pred CCcCCHHHHH----HHHHHHHhcCHhh--------------HHHHHHHHHHh-cCc--------cCCCHHHHHHHHhhhh
Confidence 3333444444 4456666431000 00000122222 222 3577889999999988
Q ss_pred hcCCCHHHHHHHHH
Q 042001 319 EVGLRSDSRAKLQE 332 (670)
Q Consensus 319 ~l~as~~cr~~LE~ 332 (670)
.+..+++|+.-|..
T Consensus 245 ~~~~~~~c~~~l~e 258 (571)
T KOG4441|consen 245 LIKRDSACRDLLDE 258 (571)
T ss_pred hhccCHHHHHHHHH
Confidence 89999999988764
No 3
>PHA02713 hypothetical protein; Provisional
Probab=99.82 E-value=1.2e-19 Score=205.76 Aligned_cols=128 Identities=17% Similarity=0.311 Sum_probs=108.7
Q ss_pred CCCccchH-HHHHHhHhhhhhcCCCeeEEEEEC-CeEEeeccchhcccchHHHhhhc-------CCCeEEeCCCCCCCHH
Q 042001 16 FSSPNISA-LLKIKIVSWSQETGLPVSIRVRVG-NRTFNLHKFPLFSKSGYFKKRLN-------ESNEYELPQHFPGGPE 86 (670)
Q Consensus 16 ~ss~~~~~-ll~~r~~~w~r~~g~~~DV~V~Vg-~~~F~lHK~vLas~S~YFr~lfs-------~~~~I~L~~d~PGGae 86 (670)
+-++.|+. +|+ +.+-||..+.+|||+|.|+ |++|++||.|||++|+||++||+ ...+|+|+ +++ ++
T Consensus 3 ~~~~~h~~~~l~--~l~~lr~~~~l~DV~L~v~~~~~f~~Hr~vLaa~S~YF~amF~~~~~e~~~~~~v~l~-~v~--~~ 77 (557)
T PHA02713 3 IDDIKHNRRVVS--NISNLLDDDILCDVIITIGDGEEIKAHKTILAAGSKYFRTLFTTPMIIRDLVTRVNLQ-MFD--KD 77 (557)
T ss_pred cchhhhhHHHHH--HHHHHHhCCCCCCEEEEeCCCCEEeehHHHHhhcCHHHHHHhcCCchhhccCceEEec-cCC--HH
Confidence 34455555 554 6777999999999999998 89999999999999999999994 14679997 898 99
Q ss_pred HHHHHHHHHhcCccccccchHhhHHHHHhhcccccccccCcHHHHHHHHHHHhhhcchhhHHHHHhhccchhhhhHhhc
Q 042001 87 TFEMIVLFIYGSSTLIDPFNVTALRCAAEFLEMTEEYCSGNLCERFDLYLNQVVFQSWDDTLIVLQRCQTLLPSTEELL 165 (670)
Q Consensus 87 aFElv~~FcYg~~i~It~~NV~~L~cAAe~LqMte~~~~~nL~~~ce~FL~~~v~~sw~dslavL~sC~~Ll~~Ae~l~ 165 (670)
+|+.+++|+||++ |+++||+.|+.||.+|||+ .|++.|++||.+.+.+ .||.++...++.++
T Consensus 78 ~~~~ll~y~Yt~~--i~~~nv~~ll~aA~~lqi~------~l~~~C~~~l~~~l~~---------~NCl~i~~~~~~~~ 139 (557)
T PHA02713 78 AVKNIVQYLYNRH--ISSMNVIDVLKCADYLLID------DLVTDCESYIKDYTNH---------DTCIYMYHRLYEMS 139 (557)
T ss_pred HHHHHHHHhcCCC--CCHHHHHHHHHHHHHHCHH------HHHHHHHHHHHhhCCc---------cchHHHHHHHHhcc
Confidence 9999999999997 7999999999999999997 5999999999999987 46666665555544
No 4
>PHA02790 Kelch-like protein; Provisional
Probab=99.79 E-value=1.5e-19 Score=201.37 Aligned_cols=116 Identities=16% Similarity=0.103 Sum_probs=98.4
Q ss_pred hhhcCCCeeEEEEECCeEEeeccchhcccchHHHhhhcC-----CCeEEeC-CCCCCCHHHHHHHHHHHhcCccccccch
Q 042001 33 SQETGLPVSIRVRVGNRTFNLHKFPLFSKSGYFKKRLNE-----SNEYELP-QHFPGGPETFEMIVLFIYGSSTLIDPFN 106 (670)
Q Consensus 33 ~r~~g~~~DV~V~Vg~~~F~lHK~vLas~S~YFr~lfs~-----~~~I~L~-~d~PGGaeaFElv~~FcYg~~i~It~~N 106 (670)
+|.+|.+|||+. |.|.+|++||.|||++|+|||+||+. ..+|.+. .|++ +++|+.+++|+||+++.||.+|
T Consensus 16 ~~~~~~~~~~~~-~~~~~~~~HR~VLAa~S~YFraMF~~~~~Es~~~v~~~~~~v~--~~~l~~lldy~YTg~l~it~~n 92 (480)
T PHA02790 16 LSMTKKFKTIIE-AIGGNIIVNSTILKKLSPYFRTHLRQKYTKNKDPVTRVCLDLD--IHSLTSIVIYSYTGKVYIDSHN 92 (480)
T ss_pred HHhhhhhceEEE-EcCcEEeeehhhhhhcCHHHHHHhcCCccccccceEEEecCcC--HHHHHHHHHhheeeeEEEeccc
Confidence 566799999776 55669999999999999999999942 2345542 2777 9999999999999999999999
Q ss_pred HhhHHHHHhhcccccccccCcHHHHHHHHHHHhhhcchhhHHHHHhhccchhhhhHhhch
Q 042001 107 VTALRCAAEFLEMTEEYCSGNLCERFDLYLNQVVFQSWDDTLIVLQRCQTLLPSTEELLI 166 (670)
Q Consensus 107 V~~L~cAAe~LqMte~~~~~nL~~~ce~FL~~~v~~sw~dslavL~sC~~Ll~~Ae~l~I 166 (670)
|+.|+.||.+|||+ .|++.|++||.+.+.+ .||.++..+|+.+++
T Consensus 93 V~~ll~aA~~Lqi~------~v~~~C~~fL~~~l~~---------~NCl~i~~~A~~y~~ 137 (480)
T PHA02790 93 VVNLLRASILTSVE------FIIYTCINFILRDFRK---------EYCVECYMMGIEYGL 137 (480)
T ss_pred HHHHHHHHHHhChH------HHHHHHHHHHHhhCCc---------chHHHHHHHHHHhCH
Confidence 99999999999997 4999999999999987 467777777776654
No 5
>PHA03098 kelch-like protein; Provisional
Probab=99.76 E-value=5.6e-18 Score=189.69 Aligned_cols=111 Identities=22% Similarity=0.280 Sum_probs=101.3
Q ss_pred cCCCeeEEEEE--CCeEEeeccchhcccchHHHhhhcCC---CeEEeCCCCCCCHHHHHHHHHHHhcCccccccchHhhH
Q 042001 36 TGLPVSIRVRV--GNRTFNLHKFPLFSKSGYFKKRLNES---NEYELPQHFPGGPETFEMIVLFIYGSSTLIDPFNVTAL 110 (670)
Q Consensus 36 ~g~~~DV~V~V--g~~~F~lHK~vLas~S~YFr~lfs~~---~~I~L~~d~PGGaeaFElv~~FcYg~~i~It~~NV~~L 110 (670)
++.+|||+|.| +|++|++||.+|+++|+||++||+.. .+|+|+ + + +++|+.+++|+||+++.|+.+||..|
T Consensus 6 ~~~~~Dv~l~~~~~~~~~~~Hk~vLaa~S~yF~~mf~~~~~~~~i~l~-~-~--~~~~~~~l~y~Ytg~~~i~~~~~~~l 81 (534)
T PHA03098 6 LQKFCDESIIIVNGGGIIKVHKIILSSSSEYFKKMFKNNFKENEINLN-I-D--YDSFNEVIKYIYTGKINITSNNVKDI 81 (534)
T ss_pred cCCCCCEEEEEEcCCEEEEeHHHHHHhhhHHHHHHHhCCCCCceEEec-C-C--HHHHHHHHHHhcCCceEEcHHHHHHH
Confidence 68899999998 99999999999999999999999543 789997 6 6 99999999999999999999999999
Q ss_pred HHHHhhcccccccccCcHHHHHHHHHHHhhhcchhhHHHHHhhccchhhhhHhhc
Q 042001 111 RCAAEFLEMTEEYCSGNLCERFDLYLNQVVFQSWDDTLIVLQRCQTLLPSTEELL 165 (670)
Q Consensus 111 ~cAAe~LqMte~~~~~nL~~~ce~FL~~~v~~sw~dslavL~sC~~Ll~~Ae~l~ 165 (670)
+.||.+|||+ .|++.|++||.+.+.. .+|..++.+|+.++
T Consensus 82 l~~A~~l~~~------~l~~~C~~~l~~~l~~---------~nc~~~~~~a~~~~ 121 (534)
T PHA03098 82 LSIANYLIID------FLINLCINYIIKIIDD---------NNCIDIYRFSFFYG 121 (534)
T ss_pred HHHHHHhCcH------HHHHHHHHHHHHhCCH---------hHHHHHHHHHHHcC
Confidence 9999999996 4999999999998864 57888888888775
No 6
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=99.62 E-value=1.1e-15 Score=135.29 Aligned_cols=98 Identities=29% Similarity=0.450 Sum_probs=86.3
Q ss_pred hhhcCCCeeEEEEEC-CeEEeeccchhcccchHHHhhhcCC-------CeEEeCCCCCCCHHHHHHHHHHHhcCccccc-
Q 042001 33 SQETGLPVSIRVRVG-NRTFNLHKFPLFSKSGYFKKRLNES-------NEYELPQHFPGGPETFEMIVLFIYGSSTLID- 103 (670)
Q Consensus 33 ~r~~g~~~DV~V~Vg-~~~F~lHK~vLas~S~YFr~lfs~~-------~~I~L~~d~PGGaeaFElv~~FcYg~~i~It- 103 (670)
++..+.+||++|.|+ +.+|++||.+|+++|+||+++|... .+|.++ +++ +++|+.+++|+|++.+.++
T Consensus 4 ~~~~~~~~D~~i~v~d~~~~~vhk~iL~~~S~~F~~~~~~~~~~~~~~~~i~~~-~~~--~~~~~~~l~~~Y~~~~~~~~ 80 (111)
T PF00651_consen 4 LFNSNEFSDVTIRVGDGKTFYVHKNILAARSPYFRNLFEGSKFKESTVPEISLP-DVS--PEAFEAFLEYMYTGEIEINS 80 (111)
T ss_dssp HHHHTTS--EEEEETTTEEEEE-HHHHHHHBHHHHHHHTTTTSTTSSEEEEEET-TSC--HHHHHHHHHHHHHSEEEEE-
T ss_pred HHcCCCCCCEEEEECCCEEEeechhhhhccchhhhhcccccccccccccccccc-ccc--ccccccccccccCCcccCCH
Confidence 566789999999999 7999999999999999999999433 257776 888 9999999999999999998
Q ss_pred cchHhhHHHHHhhcccccccccCcHHHHHHHHHHHh
Q 042001 104 PFNVTALRCAAEFLEMTEEYCSGNLCERFDLYLNQV 139 (670)
Q Consensus 104 ~~NV~~L~cAAe~LqMte~~~~~nL~~~ce~FL~~~ 139 (670)
.+|+..++..|.+|+|+ .|.+.|++||.+.
T Consensus 81 ~~~~~~ll~lA~~~~~~------~L~~~~~~~l~~~ 110 (111)
T PF00651_consen 81 DENVEELLELADKLQIP------ELKKACEKFLQES 110 (111)
T ss_dssp TTTHHHHHHHHHHTTBH------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcH------HHHHHHHHHHHhC
Confidence 99999999999999996 5999999999875
No 7
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=99.50 E-value=3.7e-14 Score=118.21 Aligned_cols=84 Identities=29% Similarity=0.452 Sum_probs=76.5
Q ss_pred eEEEEECCeEEeeccchhcccchHHHhhhc------CCCeEEeCCCCCCCHHHHHHHHHHHhcCccccccchHhhHHHHH
Q 042001 41 SIRVRVGNRTFNLHKFPLFSKSGYFKKRLN------ESNEYELPQHFPGGPETFEMIVLFIYGSSTLIDPFNVTALRCAA 114 (670)
Q Consensus 41 DV~V~Vg~~~F~lHK~vLas~S~YFr~lfs------~~~~I~L~~d~PGGaeaFElv~~FcYg~~i~It~~NV~~L~cAA 114 (670)
||++.|||++|++||.+|+++|+||++||. ....+.++ +++ +++|+.+++|+|++.+.+++.|+..++.+|
T Consensus 1 dv~i~v~~~~~~~h~~iL~~~s~~f~~~~~~~~~~~~~~~i~l~-~~~--~~~f~~~l~~ly~~~~~~~~~~~~~l~~~a 77 (90)
T smart00225 1 DVTLVVGGKKFKAHKAVLAACSPYFKALFSGDFKESKKSEIYLD-DVS--PEDFRALLEFLYTGKLDLPEENVEELLELA 77 (90)
T ss_pred CeEEEECCEEEehHHHHHhhcCHHHHHHHcCCCccCCCCEEEec-CCC--HHHHHHHHHeecCceeecCHHHHHHHHHHH
Confidence 789999999999999999999999999994 35678887 777 999999999999999999999999999999
Q ss_pred hhcccccccccCcHHHHHH
Q 042001 115 EFLEMTEEYCSGNLCERFD 133 (670)
Q Consensus 115 e~LqMte~~~~~nL~~~ce 133 (670)
++++|. .|++.|+
T Consensus 78 ~~~~~~------~l~~~c~ 90 (90)
T smart00225 78 DYLQIP------GLVELCE 90 (90)
T ss_pred HHHCcH------HHHhhhC
Confidence 999996 4877774
No 8
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=99.16 E-value=1.5e-10 Score=126.81 Aligned_cols=133 Identities=21% Similarity=0.300 Sum_probs=115.0
Q ss_pred HhhhhhcCCCeeEEEEECC-----eEEeeccchhcccchHHHhhhc-----C-CCeEEeCCCCCCCHHHHHHHHHHHhcC
Q 042001 30 VSWSQETGLPVSIRVRVGN-----RTFNLHKFPLFSKSGYFKKRLN-----E-SNEYELPQHFPGGPETFEMIVLFIYGS 98 (670)
Q Consensus 30 ~~w~r~~g~~~DV~V~Vg~-----~~F~lHK~vLas~S~YFr~lfs-----~-~~~I~L~~d~PGGaeaFElv~~FcYg~ 98 (670)
+.-+..+...+||.+.||+ +.||+||++|+..|.-|.+||+ . ..+|++| |+. |.+|...++|+|+.
T Consensus 105 ~~~l~~n~~~adv~fivg~~~~~~q~~paHk~vla~gS~VFdaMf~g~~a~~~s~ei~lp-dve--paaFl~~L~flYsd 181 (521)
T KOG2075|consen 105 QAALFNNELLADVHFIVGEEDGGSQRIPAHKLVLADGSDVFDAMFYGGLAEDASLEIRLP-DVE--PAAFLAFLRFLYSD 181 (521)
T ss_pred hHhhccCcccceeEEEeccCCCcccccchhhhhhhcchHHHHHHhccCcccccCceeecC-CcC--hhHhHHHHHHHhcc
Confidence 4457788999999999984 7999999999999999999993 2 5789998 898 99999999999999
Q ss_pred ccccccchHhhHHHHHhhcccccccccCcHHHHHHHHHHHhhhcchhhHHHHHhhccchhhhhHhhchHHHHHHHHHH
Q 042001 99 STLIDPFNVTALRCAAEFLEMTEEYCSGNLCERFDLYLNQVVFQSWDDTLIVLQRCQTLLPSTEELLIVSRCIESLAF 176 (670)
Q Consensus 99 ~i~It~~NV~~L~cAAe~LqMte~~~~~nL~~~ce~FL~~~v~~sw~dslavL~sC~~Ll~~Ae~l~Iv~RCidsLA~ 176 (670)
.+.+.++||..++.||.-.-.+ .|...|.+||+..+.. .+.+..|-+|..|+ ++-.+.++|++.|..
T Consensus 182 ev~~~~dtvi~tl~~AkKY~Vp------aLer~CVkflr~~l~~--~naf~~L~q~A~lf---~ep~Li~~c~e~id~ 248 (521)
T KOG2075|consen 182 EVKLAADTVITTLYAAKKYLVP------ALERQCVKFLRKNLMA--DNAFLELFQRAKLF---DEPSLISICLEVIDK 248 (521)
T ss_pred hhhhhHHHHHHHHHHHHHhhhH------HHHHHHHHHHHHhcCC--hHHHHHHHHHHHhh---cCHHHHHHHHHHhhh
Confidence 9999999999999999877774 6999999999999886 66777788885544 445689999998863
No 9
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=98.77 E-value=9.5e-09 Score=110.90 Aligned_cols=104 Identities=16% Similarity=0.206 Sum_probs=81.9
Q ss_pred HhhhhhcCCCeeEEEEECCeEEeeccchhcccchHHHhhh------cCCCeEEeCCCCCCCHHHHHHHHHHHhcCccccc
Q 042001 30 VSWSQETGLPVSIRVRVGNRTFNLHKFPLFSKSGYFKKRL------NESNEYELPQHFPGGPETFEMIVLFIYGSSTLID 103 (670)
Q Consensus 30 ~~w~r~~g~~~DV~V~Vg~~~F~lHK~vLas~S~YFr~lf------s~~~~I~L~~d~PGGaeaFElv~~FcYg~~i~It 103 (670)
...++......||++.|+++.|++||.+||++|.|||+|+ +.+..|.|. +-. +++|..+++|+|+|++.++
T Consensus 35 ~~~l~~~e~y~DVtfvve~~rfpAHRvILAaRs~yFRAlLYgGm~Es~q~~ipLq-~t~--~eAF~~lLrYiYtg~~~l~ 111 (620)
T KOG4350|consen 35 FDELFTSEDYSDVTFVVEDTRFPAHRVILAARSSYFRALLYGGMQESHQQLIPLQ-ETN--SEAFRALLRYIYTGKIDLA 111 (620)
T ss_pred HHHHhhcCcccceEEEEeccccchhhhhHHHHHHHHHHHHhhhhhhhhhcccccc-ccc--HHHHHHHHHHHhhcceecc
Confidence 3456677889999999999999999999999999999987 345667775 433 9999999999999999876
Q ss_pred cch---HhhHHHHHhhcccccccccCcHHHHHHHHHHHhhhc
Q 042001 104 PFN---VTALRCAAEFLEMTEEYCSGNLCERFDLYLNQVVFQ 142 (670)
Q Consensus 104 ~~N---V~~L~cAAe~LqMte~~~~~nL~~~ce~FL~~~v~~ 142 (670)
... ....+.-|.-.++ ..|-....+||.+.+..
T Consensus 112 ~~~ed~lld~LslAh~Ygf------~~Le~aiSeYl~~iL~~ 147 (620)
T KOG4350|consen 112 GVEEDILLDYLSLAHRYGF------IQLETAISEYLKEILKN 147 (620)
T ss_pred cchHHHHHHHHHHHHhcCc------HHHHHHHHHHHHHHHcc
Confidence 643 3344444555555 45888999999987653
No 10
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=98.56 E-value=1.4e-07 Score=94.30 Aligned_cols=117 Identities=20% Similarity=0.207 Sum_probs=94.1
Q ss_pred hhhhcCCCeeEEEEEC---CeEEeeccchhcccchHHHhhh--cCCCeEEeCCCCCCCHHHHHHHHHHHhcCccccccch
Q 042001 32 WSQETGLPVSIRVRVG---NRTFNLHKFPLFSKSGYFKKRL--NESNEYELPQHFPGGPETFEMIVLFIYGSSTLIDPFN 106 (670)
Q Consensus 32 w~r~~g~~~DV~V~Vg---~~~F~lHK~vLas~S~YFr~lf--s~~~~I~L~~d~PGGaeaFElv~~FcYg~~i~It~~N 106 (670)
=+.+...++||++.++ +..+++||+|||++|++.+--- .+..++...+|.. +++|..+++++||..|++..+.
T Consensus 59 dL~Ek~qfSDlk~K~~gns~k~i~AHKfVLAARsD~WkfaN~~dekse~~~~dDad--~Ea~~t~iRWIYTDEidfk~dD 136 (280)
T KOG4591|consen 59 DLLEKEQFSDLKFKFAGNSDKHIPAHKFVLAARSDFWKFANGGDEKSEELDLDDAD--FEAFHTAIRWIYTDEIDFKEDD 136 (280)
T ss_pred HHhhcccccceeEEecCCccccCchhhhhhhhhcchhhhccCCCcchhhhcccccC--HHHHHHhheeeeccccccccch
Confidence 4677889999999998 5889999999999999875322 2223333334777 9999999999999999987765
Q ss_pred H--hhHHHHHhhcccccccccCcHHHHHHHHHHHhhhcchhhHHHHHhhccchhhhhHhhc
Q 042001 107 V--TALRCAAEFLEMTEEYCSGNLCERFDLYLNQVVFQSWDDTLIVLQRCQTLLPSTEELL 165 (670)
Q Consensus 107 V--~~L~cAAe~LqMte~~~~~nL~~~ce~FL~~~v~~sw~dslavL~sC~~Ll~~Ae~l~ 165 (670)
+ ..|...|.-+|.. -|.++|+.=|...+. ..||..++..||++.
T Consensus 137 ~~L~el~e~An~FqLe------~Lke~C~k~l~a~l~---------V~NCIk~Ye~AEe~n 182 (280)
T KOG4591|consen 137 EFLLELCELANRFQLE------LLKERCEKGLGALLH---------VDNCIKFYEFAEELN 182 (280)
T ss_pred HHHHHHHHHHHHHHHH------HHHHHHHHHHhhHhh---------HhhHHHHHHHHHHhh
Confidence 4 5678889998885 489999988877765 479999999999975
No 11
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=98.38 E-value=8.6e-07 Score=96.16 Aligned_cols=119 Identities=17% Similarity=0.126 Sum_probs=100.2
Q ss_pred hhhhcCCCeeEEEEECCeEEeeccchhcccchHHHhhhcC------CCe--EEeCCCCCCCHHHHHHHHHHHhcCccccc
Q 042001 32 WSQETGLPVSIRVRVGNRTFNLHKFPLFSKSGYFKKRLNE------SNE--YELPQHFPGGPETFEMIVLFIYGSSTLID 103 (670)
Q Consensus 32 w~r~~g~~~DV~V~Vg~~~F~lHK~vLas~S~YFr~lfs~------~~~--I~L~~d~PGGaeaFElv~~FcYg~~i~It 103 (670)
-+..+|.-+||+|..-|.+.++||.-| ..|+||..||++ ... ++|+ |-.-..++|..++.=.|...|+|.
T Consensus 62 ~lf~q~enSDv~l~alg~eWrlHk~yL-~QS~yf~smf~Gtw~es~~~iIqleI~-Dp~Id~~al~~a~gsLY~dEveI~ 139 (488)
T KOG4682|consen 62 NLFLQGENSDVILEALGFEWRLHKPYL-FQSEYFKSMFSGTWKESSMNIIQLEIP-DPNIDVVALQVAFGSLYRDEVEIK 139 (488)
T ss_pred HHHhcCCCcceehhhccceeeeeeeee-eccHHHHHHhccccChhhCceEEEEcC-CCcccHHHHHHHHhhhhhhheecc
Confidence 466689999999999999999999876 779999999943 233 4555 322239999999999999999999
Q ss_pred cchHhhHHHHHhhcccccccccCcHHHHHHHHHHHhhhcchhhHHHHHhhccchhhhhHhhchH
Q 042001 104 PFNVTALRCAAEFLEMTEEYCSGNLCERFDLYLNQVVFQSWDDTLIVLQRCQTLLPSTEELLIV 167 (670)
Q Consensus 104 ~~NV~~L~cAAe~LqMte~~~~~nL~~~ce~FL~~~v~~sw~dslavL~sC~~Ll~~Ae~l~Iv 167 (670)
++.|..++.||.+||. +.|+++|.+-+.+.+.+ ++-...+..+..||++
T Consensus 140 l~dv~gvlAaA~~lql------dgl~qrC~evMie~lsp---------kta~~yYea~ckYgle 188 (488)
T KOG4682|consen 140 LSDVVGVLAAACLLQL------DGLIQRCGEVMIETLSP---------KTACGYYEAACKYGLE 188 (488)
T ss_pred HHHHHHHHHHHHHHHH------hhHHHHHHHHHHHhcCh---------hhhhHhhhhhhhhhhH
Confidence 9999999999999999 47999999999999987 4555677788888765
No 12
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=98.24 E-value=1.4e-06 Score=100.66 Aligned_cols=60 Identities=27% Similarity=0.546 Sum_probs=52.0
Q ss_pred CCCeeEEEEECCeEEeeccchhcccchHHHhhh-----c-------------CCCeEEeCCCCCCCHHHHHHHHHHHhcC
Q 042001 37 GLPVSIRVRVGNRTFNLHKFPLFSKSGYFKKRL-----N-------------ESNEYELPQHFPGGPETFEMIVLFIYGS 98 (670)
Q Consensus 37 g~~~DV~V~Vg~~~F~lHK~vLas~S~YFr~lf-----s-------------~~~~I~L~~d~PGGaeaFElv~~FcYg~ 98 (670)
+...|||++||+.-||+||++|+++|++||++| + ..+.|.+. ++| |.+||+++.|+||.
T Consensus 556 ds~hDVtf~vg~~~F~aHKfIl~~rs~flrkL~l~~~~~s~~~dIY~~~~~~~~~~~~ve-~i~--p~mfe~lL~~iYtd 632 (1267)
T KOG0783|consen 556 DSFHDVTFYVGTSMFHAHKFILCARSSFLRKLLLQKKKSSVSNDIYIEEITQSHSTIRVE-DIP--PLMFEILLHYIYTD 632 (1267)
T ss_pred cccceEEEEecCeecccceEEEEeccHHHHHHHHhhccccccceeeeecccccCceeeec-cCC--HHHHHHHHHHHhcc
Confidence 558899999999999999999999999999987 0 12345564 899 99999999999998
Q ss_pred c
Q 042001 99 S 99 (670)
Q Consensus 99 ~ 99 (670)
.
T Consensus 633 t 633 (1267)
T KOG0783|consen 633 T 633 (1267)
T ss_pred c
Confidence 6
No 13
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=98.02 E-value=8.8e-06 Score=94.39 Aligned_cols=121 Identities=19% Similarity=0.239 Sum_probs=91.1
Q ss_pred eEEEEE-CCeEEeeccchhcccchHHHhhhc----CCCeEEeCCCCCCCHHHHHHHHHHHh-cCccccc-----cchHhh
Q 042001 41 SIRVRV-GNRTFNLHKFPLFSKSGYFKKRLN----ESNEYELPQHFPGGPETFEMIVLFIY-GSSTLID-----PFNVTA 109 (670)
Q Consensus 41 DV~V~V-g~~~F~lHK~vLas~S~YFr~lfs----~~~~I~L~~d~PGGaeaFElv~~FcY-g~~i~It-----~~NV~~ 109 (670)
|++|.. +|+.|++||.+|++++.||..||. +...|... +.|-.+|.++.+++|.| +.+..+- .+=+..
T Consensus 712 d~~i~~KDGkvl~aHkc~L~aRlEYF~smf~~~w~E~sS~t~~-~~p~~~e~m~ivLdylYs~d~~~~~k~~~~~dF~~~ 790 (1267)
T KOG0783|consen 712 DTVIKLKDGKVLKAHKCFLSARLEYFSSMFQFVWMESSSITVN-LSPLTVEHMSIVLDYLYSDDKVELFKDLKESDFMFE 790 (1267)
T ss_pred eEEEEecCCcCcccceeEeeeHHHHHHHHHHHHHhhhccceee-cCcchHHHHHHHHHHHHccchHHHHhccchhhhhHH
Confidence 444433 889999999999999999999982 33335443 55666999999999999 4444321 122566
Q ss_pred HHHHHhhcccccccccCcHHHHHHHHHHHhhhcchhhHHHHHhhccchhhhhHhhc---hHHHHHHHHHHH
Q 042001 110 LRCAAEFLEMTEEYCSGNLCERFDLYLNQVVFQSWDDTLIVLQRCQTLLPSTEELL---IVSRCIESLAFM 177 (670)
Q Consensus 110 L~cAAe~LqMte~~~~~nL~~~ce~FL~~~v~~sw~dslavL~sC~~Ll~~Ae~l~---Iv~RCidsLA~k 177 (670)
++..|+.|=+++ |.+.||.-|.+.+. |++|..|+++|-.|+ +-.||+|-|.-.
T Consensus 791 il~iaDqlli~~------Lk~Ice~~ll~kl~---------lk~~~~llefaamY~ak~L~~~C~dfic~N 846 (1267)
T KOG0783|consen 791 ILSIADQLLILE------LKSICEQSLLRKLN---------LKTLPTLLEFAAMYHAKELYSRCIDFICHN 846 (1267)
T ss_pred HHHHHHHHHHHH------HHHHHHHHHHhHhc---------ccchHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 777888888875 88999988888774 689999999988774 678999976543
No 14
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=97.65 E-value=3.9e-05 Score=82.05 Aligned_cols=92 Identities=24% Similarity=0.394 Sum_probs=75.4
Q ss_pred EEEEECC------eEEeeccchhcccchHHHhhhc-------CCCeEEeCCCCCCCHHHHHHHHHHHhcCccccccchHh
Q 042001 42 IRVRVGN------RTFNLHKFPLFSKSGYFKKRLN-------ESNEYELPQHFPGGPETFEMIVLFIYGSSTLIDPFNVT 108 (670)
Q Consensus 42 V~V~Vg~------~~F~lHK~vLas~S~YFr~lfs-------~~~~I~L~~d~PGGaeaFElv~~FcYg~~i~It~~NV~ 108 (670)
|+|+|-| +.|.|.+.+|.+.=+||+..++ ...+|+|. +--.-.+|+-+++|+++....||++||+
T Consensus 1 v~ihV~De~~~~~rdF~C~~~lL~~~M~YF~~~l~~~~~~~~~~~~idis--VhCDv~iF~WLm~yv~~~~p~l~~~Nvv 78 (317)
T PF11822_consen 1 VVIHVCDEARNEKRDFTCPRDLLVSEMRYFAEYLSRYINDSQRWEEIDIS--VHCDVHIFEWLMRYVKGEPPSLTPSNVV 78 (317)
T ss_pred CEEEEEcCCCCcceeeeccHHHHHHhhHHHHHHHhhcccccCcCCCcceE--EecChhHHHHHHHHhhcCCCcCCcCcEE
Confidence 4677633 6799999999999999999872 12345553 2222559999999999999999999999
Q ss_pred hHHHHHhhcccccccccCcHHHHHHHHHHHhhh
Q 042001 109 ALRCAAEFLEMTEEYCSGNLCERFDLYLNQVVF 141 (670)
Q Consensus 109 ~L~cAAe~LqMte~~~~~nL~~~ce~FL~~~v~ 141 (670)
+++-.++||||+ .|++.|-.|+...+.
T Consensus 79 sIliSS~FL~M~------~Lve~cl~y~~~~~~ 105 (317)
T PF11822_consen 79 SILISSEFLQME------SLVEECLQYCHDHMS 105 (317)
T ss_pred EeEehhhhhccH------HHHHHHHHHHHHhHH
Confidence 999999999996 599999999977764
No 15
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=96.23 E-value=0.0088 Score=52.53 Aligned_cols=76 Identities=24% Similarity=0.370 Sum_probs=58.1
Q ss_pred EEEEECCeEEeeccchhc-ccchHHHhhhcC---------CCeEEeCCCCCCCHHHHHHHHHHHhc-Cccccc-cchHhh
Q 042001 42 IRVRVGNRTFNLHKFPLF-SKSGYFKKRLNE---------SNEYELPQHFPGGPETFEMIVLFIYG-SSTLID-PFNVTA 109 (670)
Q Consensus 42 V~V~Vg~~~F~lHK~vLa-s~S~YFr~lfs~---------~~~I~L~~d~PGGaeaFElv~~FcYg-~~i~It-~~NV~~ 109 (670)
|++.|||+.|.+-+..|. -...+|.+|++. ..++-| |=+ |+.|+.|++|.-+ +.+... ...+..
T Consensus 1 V~lNVGG~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fi--DRd--p~~F~~IL~ylr~~~~l~~~~~~~~~~ 76 (94)
T PF02214_consen 1 VRLNVGGTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFI--DRD--PELFEYILNYLRTGGKLPIPDEICLEE 76 (94)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEE--SS---HHHHHHHHHHHHHTSSB---TTS-HHH
T ss_pred CEEEECCEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEe--ccC--hhhhhHHHHHHhhcCccCCCCchhHHH
Confidence 789999999999999999 556788888742 345555 445 9999999999999 677663 568899
Q ss_pred HHHHHhhccccc
Q 042001 110 LRCAAEFLEMTE 121 (670)
Q Consensus 110 L~cAAe~LqMte 121 (670)
++..|+|.++.+
T Consensus 77 l~~Ea~fy~l~~ 88 (94)
T PF02214_consen 77 LLEEAEFYGLDE 88 (94)
T ss_dssp HHHHHHHHT-HH
T ss_pred HHHHHHHcCCCc
Confidence 999999999974
No 16
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=96.20 E-value=0.01 Score=53.58 Aligned_cols=74 Identities=18% Similarity=0.274 Sum_probs=58.2
Q ss_pred EEEE-ECCeEEeeccchhcccchHHHhhhcCC-------CeEEeCCCCCCCHHHHHHHHHHHhcCcc-------------
Q 042001 42 IRVR-VGNRTFNLHKFPLFSKSGYFKKRLNES-------NEYELPQHFPGGPETFEMIVLFIYGSST------------- 100 (670)
Q Consensus 42 V~V~-Vg~~~F~lHK~vLas~S~YFr~lfs~~-------~~I~L~~d~PGGaeaFElv~~FcYg~~i------------- 100 (670)
|++. -+|+.|.+.+.+. ..|+-++.|+.+. ..|.|+ +++ +.+++.+++||+-.+-
T Consensus 4 v~L~S~Dg~~f~v~~~~a-~~S~~i~~~l~~~~~~~~~~~~Ipl~-~v~--~~~L~~Vi~yc~~h~~~~~~~~~~~~~~~ 79 (104)
T smart00512 4 IKLISSDGEVFEVEREVA-RQSKTIKAMIEDLGVDDENNNPIPLP-NVT--SKILSKVIEYCEHHVDDPPSVADKDDIPT 79 (104)
T ss_pred EEEEeCCCCEEEecHHHH-HHHHHHHHHHHccCcccCCCCCccCC-CcC--HHHHHHHHHHHHHcccCCCCccccccccH
Confidence 4554 3889999999966 7999999988321 368887 888 9999999999984321
Q ss_pred ------ccccchHhhHHHHHhhccc
Q 042001 101 ------LIDPFNVTALRCAAEFLEM 119 (670)
Q Consensus 101 ------~It~~NV~~L~cAAe~LqM 119 (670)
.+..+++..|+.||.||++
T Consensus 80 wD~~F~~~d~~~l~dLl~AAnyL~I 104 (104)
T smart00512 80 WDAEFLKIDQETLFELILAANYLDI 104 (104)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 1666689999999999986
No 17
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism]
Probab=95.66 E-value=0.056 Score=56.09 Aligned_cols=90 Identities=21% Similarity=0.333 Sum_probs=74.1
Q ss_pred EEEEECCeEEeeccchhcccchHHHhhhcCC--------CeEEeCCCCCCCHHHHHHHHHHHhcCcccc--ccchHhhHH
Q 042001 42 IRVRVGNRTFNLHKFPLFSKSGYFKKRLNES--------NEYELPQHFPGGPETFEMIVLFIYGSSTLI--DPFNVTALR 111 (670)
Q Consensus 42 V~V~Vg~~~F~lHK~vLas~S~YFr~lfs~~--------~~I~L~~d~PGGaeaFElv~~FcYg~~i~I--t~~NV~~L~ 111 (670)
|.+.|||..|..+|.-|.-..|||+.|+... ..|-| |=+ |.=|+++++|+=.|.+.+ +..++..|+
T Consensus 7 vkLnvGG~~F~Tsk~TLtk~dg~fk~m~e~~i~~~~d~s~~IFI--DRS--pKHF~~ILNfmRdGdv~LPe~~kel~El~ 82 (230)
T KOG2716|consen 7 VKLNVGGTIFKTSKSTLTKFDGFFKTMLETDIPVEKDESGCIFI--DRS--PKHFDTILNFMRDGDVDLPESEKELKELL 82 (230)
T ss_pred EEEecCCeEEEeehhhhhhhhhHHHHHhhcCCccccCCcCcEEe--cCC--hhHHHHHHHhhhcccccCccchHHHHHHH
Confidence 4588999999999999999999999999432 22444 334 999999999999888776 455788999
Q ss_pred HHHhhcccccccccCcHHHHHHHHHHHhhh
Q 042001 112 CAAEFLEMTEEYCSGNLCERFDLYLNQVVF 141 (670)
Q Consensus 112 cAAe~LqMte~~~~~nL~~~ce~FL~~~v~ 141 (670)
.=|+|..++ .|++.|+.=+.....
T Consensus 83 ~EA~fYlL~------~Lv~~C~~~i~~~~~ 106 (230)
T KOG2716|consen 83 REAEFYLLD------GLVELCQSAIARLIR 106 (230)
T ss_pred HHHHHhhHH------HHHHHHHHHhhhccc
Confidence 999999996 599999987776543
No 18
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=93.97 E-value=0.059 Score=56.99 Aligned_cols=86 Identities=15% Similarity=0.124 Sum_probs=61.8
Q ss_pred HhhhhhcCCCeeEEEEECCeEEeeccchhcccchHHHhhhcC--------CCeEEeCCCCCCCHHHHHHHHHHHhcCccc
Q 042001 30 VSWSQETGLPVSIRVRVGNRTFNLHKFPLFSKSGYFKKRLNE--------SNEYELPQHFPGGPETFEMIVLFIYGSSTL 101 (670)
Q Consensus 30 ~~w~r~~g~~~DV~V~Vg~~~F~lHK~vLas~S~YFr~lfs~--------~~~I~L~~d~PGGaeaFElv~~FcYg~~i~ 101 (670)
.+=..+...-.||-|......|++||+.|+++|++|+-+.+. ..+|+.- +|. -++|+..+.+.|++..-
T Consensus 121 ~ad~ye~k~c~dldiiFkeTcfpahRA~laaRCpffK~l~nsd~e~~ae~i~dik~a-g~d--m~~feafLh~l~tgEfg 197 (401)
T KOG2838|consen 121 FADGYERKVCGDLDIIFKETCFPAHRAFLAARCPFFKILANSDEEPEAEDICDIKFA-GFD--MDAFEAFLHSLITGEFG 197 (401)
T ss_pred HhhhhheeeeccceeeeeeccchHHHHHHHhhCcchhhhccCCCCcchhhhhhhhhh-ccC--hHHHHHHHHHHHhcccc
Confidence 333444456789999999999999999999999999998742 1345553 676 88999999999999863
Q ss_pred ---cccchHhhHHHHHhhcc
Q 042001 102 ---IDPFNVTALRCAAEFLE 118 (670)
Q Consensus 102 ---It~~NV~~L~cAAe~Lq 118 (670)
+.-.|+..|-.-.+-++
T Consensus 198 mEd~~fqn~diL~QL~edFG 217 (401)
T KOG2838|consen 198 MEDLGFQNSDILEQLCEDFG 217 (401)
T ss_pred hhhcCCchHHHHHHHHHhhC
Confidence 34445554444333333
No 19
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription]
Probab=93.77 E-value=0.2 Score=45.64 Aligned_cols=69 Identities=26% Similarity=0.352 Sum_probs=57.1
Q ss_pred CCeEEeeccchhcccchHHHhhhc--------CCCeEEeCCCCCCCHHHHHHHHHHH-----hcCc------cccccchH
Q 042001 47 GNRTFNLHKFPLFSKSGYFKKRLN--------ESNEYELPQHFPGGPETFEMIVLFI-----YGSS------TLIDPFNV 107 (670)
Q Consensus 47 g~~~F~lHK~vLas~S~YFr~lfs--------~~~~I~L~~d~PGGaeaFElv~~Fc-----Yg~~------i~It~~NV 107 (670)
+|.+|-+-|- .|.-||-+|+|++ ...+|.++ +|| +..+|.+..|. |++. ++|-|+-+
T Consensus 25 Ddhefiikre-~AmtSgTiraml~gpg~~se~~~n~v~f~-di~--shiLeKvc~Yl~Yk~rY~~~s~eiPeF~Ippema 100 (112)
T KOG3473|consen 25 DDHEFIIKRE-HAMTSGTIRAMLSGPGVFSEAEKNEVYFR-DIP--SHILEKVCEYLAYKVRYTNSSTEIPEFDIPPEMA 100 (112)
T ss_pred CCcEEEEeeh-hhhhhhHHHHHHcCCccccccccceEEec-cch--HHHHHHHHHHhhheeeeccccccCCCCCCCHHHH
Confidence 6788888776 6788999999984 45679998 999 99999998765 5543 57889999
Q ss_pred hhHHHHHhhccc
Q 042001 108 TALRCAAEFLEM 119 (670)
Q Consensus 108 ~~L~cAAe~LqM 119 (670)
..|+.||+||+.
T Consensus 101 leLL~aAn~Lec 112 (112)
T KOG3473|consen 101 LELLMAANYLEC 112 (112)
T ss_pred HHHHHHhhhhcC
Confidence 999999999973
No 20
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=90.37 E-value=0.86 Score=37.60 Aligned_cols=52 Identities=12% Similarity=0.280 Sum_probs=40.7
Q ss_pred EEEEE-CCeEEeeccchhcccchHHHhhhc---CCC-eEEeCCCCCCCHHHHHHHHHHHhc
Q 042001 42 IRVRV-GNRTFNLHKFPLFSKSGYFKKRLN---ESN-EYELPQHFPGGPETFEMIVLFIYG 97 (670)
Q Consensus 42 V~V~V-g~~~F~lHK~vLas~S~YFr~lfs---~~~-~I~L~~d~PGGaeaFElv~~FcYg 97 (670)
|++.- +|+.|.+.+.+. ..|+.++.|+. ... .|.|+ +++ +.+++.+++||+-
T Consensus 3 v~L~SsDg~~f~V~~~~a-~~S~~i~~ml~~~~~~~~~Ipl~-~v~--~~~L~kViewc~~ 59 (62)
T PF03931_consen 3 VKLVSSDGQEFEVSREAA-KQSKTIKNMLEDLGDEDEPIPLP-NVS--SRILKKVIEWCEH 59 (62)
T ss_dssp EEEEETTSEEEEEEHHHH-TTSHHHHHHHHCTCCCGTEEEET-TS---HHHHHHHHHHHHH
T ss_pred EEEEcCCCCEEEeeHHHH-HHhHHHHHHHhhhcccccccccC-ccC--HHHHHHHHHHHHh
Confidence 44444 789999999865 58999999983 222 58998 898 9999999999973
No 21
>KOG3840 consensus Uncharaterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=90.12 E-value=1.7 Score=46.90 Aligned_cols=107 Identities=19% Similarity=0.295 Sum_probs=80.1
Q ss_pred hhcCCCeeEEEEECCeEEeeccchhcccchHH-Hhhh---------cCCCeEEeCCCCCCCHHHHHHHHHHHhcCccccc
Q 042001 34 QETGLPVSIRVRVGNRTFNLHKFPLFSKSGYF-KKRL---------NESNEYELPQHFPGGPETFEMIVLFIYGSSTLID 103 (670)
Q Consensus 34 r~~g~~~DV~V~Vg~~~F~lHK~vLas~S~YF-r~lf---------s~~~~I~L~~d~PGGaeaFElv~~FcYg~~i~It 103 (670)
+..|-+--++..|++..|..-+++|-+.-.-. -.|| ++..+.++-+|+. ...|..+++|--+|.|.-.
T Consensus 90 ~~pg~~~~~t~lvd~~rf~v~q~llt~~p~Tmlg~mf~~g~~f~~pNErgEyeVAdGi~--s~vFRAILdYYksG~iRCP 167 (438)
T KOG3840|consen 90 CSPGEGDKVCLLVDQTRFLVSQRLLTSKPDTMLGRMFSMGADLVSPNERDEFEVADGMT--SSCFRAILDYYQSGTMRCP 167 (438)
T ss_pred CCCCCCcceEEEeeeEEEEeeeeeecCCcchhhhhhhcccccccCCCcCCceehhcchh--HHHHHHHHHHHhcCceeCC
Confidence 66677778899999999999999997765432 2244 3456777765665 8999999999888887654
Q ss_pred cc-hHhhHHHHHhhcccccc---------------cccCcHHHHHHHHHHHhhhc
Q 042001 104 PF-NVTALRCAAEFLEMTEE---------------YCSGNLCERFDLYLNQVVFQ 142 (670)
Q Consensus 104 ~~-NV~~L~cAAe~LqMte~---------------~~~~nL~~~ce~FL~~~v~~ 142 (670)
+. .|-.|+.|.+||-+.=+ .+.+.-.++-+.||++.|++
T Consensus 168 ~~vSvpELrEACDYLlipF~a~TvkCqnL~aLlHELSNeGAR~QFe~fLEe~ILP 222 (438)
T KOG3840|consen 168 SSVSVSELREACDYLLVPFNAQTVKCQNLHALLHELSNEGAREQFSQFLEEIILP 222 (438)
T ss_pred CCCchHHHHhhcceEEeecccceeeehhHHHHHHHhcchhHHHHHHHHHHHHHHH
Confidence 43 78899999999988632 33345567778888888776
No 22
>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones]
Probab=88.58 E-value=1 Score=44.60 Aligned_cols=86 Identities=12% Similarity=0.164 Sum_probs=66.5
Q ss_pred CCeEEeeccchhcccchHHHhhhc----CC--CeEEeCCCCCCCHHHHHHHHHHHhcCcc--------------------
Q 042001 47 GNRTFNLHKFPLFSKSGYFKKRLN----ES--NEYELPQHFPGGPETFEMIVLFIYGSST-------------------- 100 (670)
Q Consensus 47 g~~~F~lHK~vLas~S~YFr~lfs----~~--~~I~L~~d~PGGaeaFElv~~FcYg~~i-------------------- 100 (670)
+|+.|.+-..+ |..|.-++.++. .. ..|-|+ .+. +.+|.+++.|||--+-
T Consensus 13 DG~~f~ve~~~-a~~s~~i~~~~~~~~~~~~~~~IPl~-nV~--~~iL~kVIewC~~Hk~d~~~~~~~~~~~~~~~i~~W 88 (162)
T KOG1724|consen 13 DGEIFEVEEEV-ARQSQTISAHMIEDGCADENDPIPLP-NVT--SKILKKVIEWCKKHKDDDPANPEDKELPEETDIPEW 88 (162)
T ss_pred CCceeehhHHH-HHHhHHHHHHHHHcCCCccCCccccC-ccC--HHHHHHHHHHHHHcccccccccccccccccCCccHH
Confidence 78889888875 467888888762 11 257787 688 9999999999997431
Q ss_pred -----ccccchHhhHHHHHhhcccccccccCcHHHHHHHHHHHhhhc
Q 042001 101 -----LIDPFNVTALRCAAEFLEMTEEYCSGNLCERFDLYLNQVVFQ 142 (670)
Q Consensus 101 -----~It~~NV~~L~cAAe~LqMte~~~~~nL~~~ce~FL~~~v~~ 142 (670)
.+...++..|.-||.||+|. +|++.|+.....++--
T Consensus 89 D~~Flk~d~~tLfdli~AAnyLdi~------gLl~~~ck~va~mikg 129 (162)
T KOG1724|consen 89 DAEFLKVDQGTLFDLILAANYLDIK------GLLDLTCKTVANMIKG 129 (162)
T ss_pred HHHHHhcCHHHHHHHHHHhhhcccH------HHHHHHHHHHHHHHcc
Confidence 13335789999999999995 6999999988887743
No 23
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=88.52 E-value=0.12 Score=56.90 Aligned_cols=98 Identities=18% Similarity=0.130 Sum_probs=64.2
Q ss_pred ccCCCCCccchHHHHHHhHhhhhhcCCCeeEEEEE-CCeEEeeccchhcccchHHHhhh---c-CCCeEEeCCCCCCCHH
Q 042001 12 ASSPFSSPNISALLKIKIVSWSQETGLPVSIRVRV-GNRTFNLHKFPLFSKSGYFKKRL---N-ESNEYELPQHFPGGPE 86 (670)
Q Consensus 12 ~~~~~ss~~~~~ll~~r~~~w~r~~g~~~DV~V~V-g~~~F~lHK~vLas~S~YFr~lf---s-~~~~I~L~~d~PGGae 86 (670)
+.+||-+|.++ ++...+. |.-.|++..+ .|..|.+||+.|+++|.||...+ - ...+|+=...+ +.
T Consensus 129 ~~qP~aahi~s-~l~dt~l------~~~~di~f~~q~g~~f~ahkfll~arSs~~~~k~v~~~~~~heI~~~~v~---~~ 198 (516)
T KOG0511|consen 129 ARQPPAAHIQS-SLRDTFL------GCCHDIDFLQQEGANFDAHKFLLEARSSNYFPKDVMFYVQGHEIEAHRVI---LS 198 (516)
T ss_pred ccCCcchHHHH-Hhhcccc------ccccchHHHhhccccccHHHHHHHhhhcccCchhhhhccccCchhhhhhh---Hh
Confidence 45888888776 4443222 4566888877 67999999999999999887643 2 44556322134 78
Q ss_pred HHHHHHHHHhcCccccccchHhhHHHHHhhccc
Q 042001 87 TFEMIVLFIYGSSTLIDPFNVTALRCAAEFLEM 119 (670)
Q Consensus 87 aFElv~~FcYg~~i~It~~NV~~L~cAAe~LqM 119 (670)
+|+..++|.|-..=.+-+.--.+|+.-..-++.
T Consensus 199 ~f~~flk~lyl~~na~~~~qynallsi~~kF~~ 231 (516)
T KOG0511|consen 199 AFSPFLKQLYLNTNAEWKDQYNALLSIEVKFSK 231 (516)
T ss_pred hhhHHHHHHHHhhhhhhhhHHHHHHhhhhhccH
Confidence 999999999975323333333445554444444
No 24
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=88.11 E-value=0.57 Score=49.83 Aligned_cols=53 Identities=15% Similarity=0.259 Sum_probs=36.9
Q ss_pred EEeeccchhcccchHHHhhh----------c-----CCCeEEeCCCCCCCHHHHHH-HHHHHhcCcccccc
Q 042001 50 TFNLHKFPLFSKSGYFKKRL----------N-----ESNEYELPQHFPGGPETFEM-IVLFIYGSSTLIDP 104 (670)
Q Consensus 50 ~F~lHK~vLas~S~YFr~lf----------s-----~~~~I~L~~d~PGGaeaFEl-v~~FcYg~~i~It~ 104 (670)
++.+||.+.+++|++||.++ + ...+|.+..-|= |.+|.. .+-|.||..++++.
T Consensus 262 eikahkai~aaRS~ffRnLL~RkiregeE~sdrtlr~PkRIifdE~I~--PkafA~i~lhclYTD~lDlSl 330 (401)
T KOG2838|consen 262 EIKAHKAIAAARSKFFRNLLLRKIREGEEGSDRTLRRPKRIIFDELIF--PKAFAPIFLHCLYTDRLDLSL 330 (401)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHhhcccccccccccCCceeechhhhc--chhhhhhhhhhheecccchhh
Confidence 58899999999999999976 0 123455431222 566654 46899999887643
No 25
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=75.41 E-value=3.5 Score=28.29 Aligned_cols=19 Identities=26% Similarity=0.384 Sum_probs=16.7
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 042001 562 DYESTSFRIQNLEQELMSL 580 (670)
Q Consensus 562 ~~~~~~~Rv~~LEke~~~m 580 (670)
+|+..+.||.+||+++..=
T Consensus 2 E~~rlr~rI~dLer~L~~C 20 (23)
T PF04508_consen 2 EMNRLRNRISDLERQLSEC 20 (23)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 6899999999999998753
No 26
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=70.70 E-value=5 Score=44.74 Aligned_cols=102 Identities=18% Similarity=0.149 Sum_probs=65.0
Q ss_pred eEEeeccchhcccchHHHhhhcC-------CCeE---EeCCCCCCCHHHHHHHHHHHhcCccccccchHhhHHHHHhhcc
Q 042001 49 RTFNLHKFPLFSKSGYFKKRLNE-------SNEY---ELPQHFPGGPETFEMIVLFIYGSSTLIDPFNVTALRCAAEFLE 118 (670)
Q Consensus 49 ~~F~lHK~vLas~S~YFr~lfs~-------~~~I---~L~~d~PGGaeaFElv~~FcYg~~i~It~~NV~~L~cAAe~Lq 118 (670)
..+++|..++ +++.||+.||.+ ++++ .|| .+. ....|.+++|.|+.+-+|-+.-...++--|..|-
T Consensus 301 ~RyP~hla~i-~R~eyfk~mf~g~f~e~s~n~~~p~lslp-~~~--~~vveI~lr~lY~d~tdi~~~~A~dvll~ad~la 376 (516)
T KOG0511|consen 301 DRYPAHLARI-LRVEYFKSMFVGDFIESSVNDTRPGLSLP-SLA--DVVVEIDLRNLYCDQTDIIFDVASDVLLFADKLA 376 (516)
T ss_pred ccccHHHHHH-HHHHHHHHHhccchhhhcCCccccccccc-hHH--HHHHHHHHHHhhcccccchHHHHhhHHHHhhHhh
Confidence 4599999988 678899999831 2221 232 232 6678999999999999999998888888888887
Q ss_pred cccccccCcHHHHHHHHHHHhhhcc-hhhHHHHHhhccch
Q 042001 119 MTEEYCSGNLCERFDLYLNQVVFQS-WDDTLIVLQRCQTL 157 (670)
Q Consensus 119 Mte~~~~~nL~~~ce~FL~~~v~~s-w~dslavL~sC~~L 157 (670)
..++- .|...+..-+.+..-.. --+.+.++..|-++
T Consensus 377 l~~dr---~Lkt~as~~itq~~e~id~y~V~dIl~~~wd~ 413 (516)
T KOG0511|consen 377 LADDR---LLKTAASAEITQWLELIDMYGVLDILEYCWDL 413 (516)
T ss_pred hhhhh---hhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHh
Confidence 75321 13333333333322211 01245556666543
No 27
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=67.69 E-value=6.3 Score=43.08 Aligned_cols=29 Identities=31% Similarity=0.429 Sum_probs=26.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 042001 560 RTDYESTSFRIQNLEQELMSLKRSVVQNI 588 (670)
Q Consensus 560 r~~~~~~~~Rv~~LEke~~~mk~~l~~~~ 588 (670)
|.+||.+..||+|||+|...|||.|+...
T Consensus 288 RsElDe~~krL~ELrR~vr~L~k~l~~l~ 316 (320)
T TIGR01834 288 RSELDEAHQRIQQLRREVKSLKKRLGDLE 316 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 67999999999999999999999998773
No 28
>PF14077 WD40_alt: Alternative WD40 repeat motif
Probab=64.22 E-value=4.3 Score=32.27 Aligned_cols=20 Identities=30% Similarity=0.557 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 042001 564 ESTSFRIQNLEQELMSLKRS 583 (670)
Q Consensus 564 ~~~~~Rv~~LEke~~~mk~~ 583 (670)
|.++.||.|||.|...+||.
T Consensus 14 e~l~vrv~eLEeEV~~LrKI 33 (48)
T PF14077_consen 14 EQLRVRVSELEEEVRTLRKI 33 (48)
T ss_pred chheeeHHHHHHHHHHHHHH
Confidence 45889999999999999886
No 29
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=63.17 E-value=6.9 Score=33.79 Aligned_cols=35 Identities=20% Similarity=0.272 Sum_probs=28.3
Q ss_pred ccccchHhhHHHHHhhcccccccccCcHHHHHHHHHHHhhh
Q 042001 101 LIDPFNVTALRCAAEFLEMTEEYCSGNLCERFDLYLNQVVF 141 (670)
Q Consensus 101 ~It~~NV~~L~cAAe~LqMte~~~~~nL~~~ce~FL~~~v~ 141 (670)
.++...+..|+.||.||+|. .|++.|+.++...+.
T Consensus 10 ~~~~~~L~~l~~AA~yL~I~------~L~~~~~~~iA~~i~ 44 (78)
T PF01466_consen 10 DVDNDELFDLLNAANYLDIK------GLLDLCCKYIANMIK 44 (78)
T ss_dssp -S-HHHHHHHHHHHHHHT-H------HHHHHHHHHHHHHHT
T ss_pred HcCHHHHHHHHHHHHHHcch------HHHHHHHHHHHHHhc
Confidence 35677999999999999996 699999999988774
No 30
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]
Probab=61.32 E-value=32 Score=33.35 Aligned_cols=88 Identities=13% Similarity=0.166 Sum_probs=62.8
Q ss_pred EECCeEEeeccchhcccchHHHhhhcCCCeEEeCC---CCCCCHHHHHHHHHHHhcCccccc------------------
Q 042001 45 RVGNRTFNLHKFPLFSKSGYFKKRLNESNEYELPQ---HFPGGPETFEMIVLFIYGSSTLID------------------ 103 (670)
Q Consensus 45 ~Vg~~~F~lHK~vLas~S~YFr~lfs~~~~I~L~~---d~PGGaeaFElv~~FcYg~~i~It------------------ 103 (670)
-.+|+.|.+.+. .|-+|-.++.|+.+.....+|- .+- +..|..+.+||--.+=..+
T Consensus 8 s~dge~F~vd~~-iAerSiLikN~l~d~~~~n~p~p~pnVr--Ssvl~kv~ew~ehh~~s~sede~d~~~rks~p~D~wd 84 (158)
T COG5201 8 SIDGEIFRVDEN-IAERSILIKNMLCDSTACNYPIPAPNVR--SSVLMKVQEWMEHHTSSLSEDENDLEIRKSKPSDFWD 84 (158)
T ss_pred ecCCcEEEehHH-HHHHHHHHHHHhccccccCCCCcccchh--HHHHHHHHHHHHhccccCCCccChHhhhccCCccHHH
Confidence 458899999987 6788999999886555444331 333 8899999999964432222
Q ss_pred -------cchHhhHHHHHhhcccccccccCcHHHHHHHHHHHhhh
Q 042001 104 -------PFNVTALRCAAEFLEMTEEYCSGNLCERFDLYLNQVVF 141 (670)
Q Consensus 104 -------~~NV~~L~cAAe~LqMte~~~~~nL~~~ce~FL~~~v~ 141 (670)
..-...+.-||.||++. .|++.||+-..+.+-
T Consensus 85 r~Fm~vDqemL~eI~laaNYL~ik------pLLd~gCKivaemir 123 (158)
T COG5201 85 RFFMEVDQEMLLEICLAANYLEIK------PLLDLGCKIVAEMIR 123 (158)
T ss_pred HHHHHhhHHHHHHHHHhhccccch------HHHHHHHHHHHHHHc
Confidence 12355677899999996 489999888877764
No 31
>PF14363 AAA_assoc: Domain associated at C-terminal with AAA
Probab=55.84 E-value=7.8 Score=34.94 Aligned_cols=42 Identities=21% Similarity=0.241 Sum_probs=32.5
Q ss_pred cCCcccccchhHHHHHHHHHHHccccchhhhcccccccccccC
Q 042001 419 VPVSWRQSHDQLYRAMIIFLKAHRHLSQEEKGSVCKYLDCQKL 461 (670)
Q Consensus 419 lP~~AR~~hDgLYRAIDiYLKaHp~lse~Er~~lCr~ldc~KL 461 (670)
+|++.......||+|+.+||.+....+- .|-++++.-|.+.+
T Consensus 30 I~E~~g~~~N~ly~a~~~YL~s~~s~~a-~rL~~~~~~~~~~~ 71 (98)
T PF14363_consen 30 IPEFDGLSRNELYDAAQAYLSSKISPSA-RRLKASKSKNSKNL 71 (98)
T ss_pred EEeCCCccccHHHHHHHHHHhhccCccc-ceeeecccCCCCce
Confidence 3444446678999999999999987775 88888888776664
No 32
>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only]
Probab=54.06 E-value=33 Score=39.01 Aligned_cols=76 Identities=18% Similarity=0.239 Sum_probs=58.3
Q ss_pred EEEEECCeEEeeccchhcccc--hHHHhhhcCC--------CeEEeCCCCCCCHHHHHHHHHHHhcCccccccchHhhHH
Q 042001 42 IRVRVGNRTFNLHKFPLFSKS--GYFKKRLNES--------NEYELPQHFPGGPETFEMIVLFIYGSSTLIDPFNVTALR 111 (670)
Q Consensus 42 V~V~Vg~~~F~lHK~vLas~S--~YFr~lfs~~--------~~I~L~~d~PGGaeaFElv~~FcYg~~i~It~~NV~~L~ 111 (670)
|.+.|||+.|.--+.-|+.-. .+|.+++++. .-|-| |=. |+.|..+++|.-|+++.+..--...|+
T Consensus 13 V~lNVGGriF~Ts~qTL~~~~~DSffsaL~s~~~~s~~~~~~~iFI--DRD--PdlFaviLn~LRTg~L~~~g~~~~~ll 88 (465)
T KOG2714|consen 13 VKLNVGGRIFETSAQTLTWIPRDSFFSALLSGRINSLKDESGAIFI--DRD--PDLFAVILNLLRTGDLDASGVFPERLL 88 (465)
T ss_pred EEEecCceEEecchhhhhcCCcchHHHHHhcCccccccCCCCceEe--cCC--chHHHHHHHHHhcCCCCCccCchhhhh
Confidence 567899999999999988766 6888888421 12334 334 999999999999999999554444455
Q ss_pred H-HHhhccccc
Q 042001 112 C-AAEFLEMTE 121 (670)
Q Consensus 112 c-AAe~LqMte 121 (670)
- =|+|.++++
T Consensus 89 hdEA~fYGl~~ 99 (465)
T KOG2714|consen 89 HDEAMFYGLTP 99 (465)
T ss_pred hhhhhhcCcHH
Confidence 5 999999974
No 33
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=46.55 E-value=30 Score=37.47 Aligned_cols=38 Identities=21% Similarity=0.192 Sum_probs=30.4
Q ss_pred hhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 042001 553 MKSCELSRTDYESTSFRIQNLEQELMSLKRSVVQNISK 590 (670)
Q Consensus 553 ~~~~~~lr~~~~~~~~Rv~~LEke~~~mk~~l~~~~~~ 590 (670)
.+|.+.|...=+..|-|+.+||||+..||+.|...-+.
T Consensus 254 ~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e~~~~ 291 (294)
T KOG4571|consen 254 LGELEGLEKRNEELKDQASELEREIRYLKQLILEVYKK 291 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566677777889999999999999999999766443
No 34
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=41.62 E-value=86 Score=33.18 Aligned_cols=83 Identities=13% Similarity=0.267 Sum_probs=63.3
Q ss_pred EEEEECCeEEeeccchhcccch--HHHhhhcC---------CCeEEeCCCCCCCHHHHHHHHHHHhcCccc-cccchHhh
Q 042001 42 IRVRVGNRTFNLHKFPLFSKSG--YFKKRLNE---------SNEYELPQHFPGGPETFEMIVLFIYGSSTL-IDPFNVTA 109 (670)
Q Consensus 42 V~V~Vg~~~F~lHK~vLas~S~--YFr~lfs~---------~~~I~L~~d~PGGaeaFElv~~FcYg~~i~-It~~NV~~ 109 (670)
|.+.+||+.|---..-|.-+=| .+-+||++ ..-+-| |=. |.-||-++.|.-.|.+. .+.-|+..
T Consensus 11 vrlnigGk~f~TTidTlv~rEPDSMLa~MF~~~g~~~~~d~kGa~lI--DRs--p~yFepIlNyLr~Gq~~~~s~i~~lg 86 (302)
T KOG1665|consen 11 VRLNIGGKKFCTTIDTLVIREPDSMLAAMFSGRGAMCQEDKKGAVLI--DRS--PKYFEPILNYLRDGQIPSLSDIDCLG 86 (302)
T ss_pred heeecCCeEEEEeehhhcccCchHHHHHHHccCCCccccccCceEEE--ccC--chhhHHHHHHHhcCceeecCCccHHH
Confidence 5678999999988888877765 56678832 122334 334 89999999999999975 56679999
Q ss_pred HHHHHhhcccccccccCcHHHHHHH
Q 042001 110 LRCAAEFLEMTEEYCSGNLCERFDL 134 (670)
Q Consensus 110 L~cAAe~LqMte~~~~~nL~~~ce~ 134 (670)
++.+|.|+|+- .|++..++
T Consensus 87 vLeeArff~i~------sL~~hle~ 105 (302)
T KOG1665|consen 87 VLEEARFFQIL------SLKDHLED 105 (302)
T ss_pred HHHHhhHHhhH------hHHhHHhh
Confidence 99999999994 47766555
No 35
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=37.76 E-value=55 Score=27.47 Aligned_cols=32 Identities=22% Similarity=0.201 Sum_probs=24.8
Q ss_pred hhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 042001 553 MKSCELSRTDYESTSFRIQNLEQELMSLKRSV 584 (670)
Q Consensus 553 ~~~~~~lr~~~~~~~~Rv~~LEke~~~mk~~l 584 (670)
+.|.+.||..+....-|+.+||.|+.-+|...
T Consensus 13 rEEVevLK~~I~eL~~~n~~Le~EN~~Lk~~~ 44 (59)
T PF01166_consen 13 REEVEVLKEQIAELEERNSQLEEENNLLKQNA 44 (59)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 44566788888888888888888888887653
No 36
>PF09712 PHA_synth_III_E: Poly(R)-hydroxyalkanoic acid synthase subunit (PHA_synth_III_E)
Probab=34.69 E-value=29 Score=37.47 Aligned_cols=23 Identities=30% Similarity=0.528 Sum_probs=21.3
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHH
Q 042001 560 RTDYESTSFRIQNLEQELMSLKR 582 (670)
Q Consensus 560 r~~~~~~~~Rv~~LEke~~~mk~ 582 (670)
|.+||.+..||+|||||...+||
T Consensus 271 r~evd~l~k~l~eLrre~r~Lkr 293 (293)
T PF09712_consen 271 RSEVDELYKRLHELRREVRALKR 293 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Confidence 77999999999999999999885
No 37
>PF10929 DUF2811: Protein of unknown function (DUF2811); InterPro: IPR021231 This is a bacterial family of uncharacterised proteins.
Probab=32.02 E-value=31 Score=28.80 Aligned_cols=19 Identities=32% Similarity=0.494 Sum_probs=16.6
Q ss_pred hhHHHHHHHHHHHccccch
Q 042001 428 DQLYRAMIIFLKAHRHLSQ 446 (670)
Q Consensus 428 DgLYRAIDiYLKaHp~lse 446 (670)
-.||.|+..||+.||+-.+
T Consensus 8 e~L~~~m~~fie~hP~WDQ 26 (57)
T PF10929_consen 8 EDLHQAMKDFIETHPNWDQ 26 (57)
T ss_pred HHHHHHHHHHHHcCCCchH
Confidence 4699999999999998765
No 38
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=29.80 E-value=33 Score=36.26 Aligned_cols=39 Identities=26% Similarity=0.373 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccCccccccccccchhh
Q 042001 564 ESTSFRIQNLEQELMSLKRSVVQNISKKTESVSTKQQNMKFY 605 (670)
Q Consensus 564 ~~~~~Rv~~LEke~~~mk~~l~~~~~~~~~~~~~~~~~~~~~ 605 (670)
|..|.|+.|||+|+...++.++.. +.+-.+-|.-|+|.|
T Consensus 89 DRFR~Rn~ELE~elr~~~~~~~~L---~~Ev~~L~~DN~kLY 127 (248)
T PF08172_consen 89 DRFRQRNAELEEELRKQQQTISSL---RREVESLRADNVKLY 127 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
No 39
>KOG2715 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=28.03 E-value=1.9e+02 Score=29.37 Aligned_cols=94 Identities=18% Similarity=0.231 Sum_probs=67.8
Q ss_pred CCCeeEEEEECCeEEeeccchhcccchHHHhhh-c---------CCCeEEeCCCCCCCHHHHHHHHHHHhcCccccccch
Q 042001 37 GLPVSIRVRVGNRTFNLHKFPLFSKSGYFKKRL-N---------ESNEYELPQHFPGGPETFEMIVLFIYGSSTLIDPFN 106 (670)
Q Consensus 37 g~~~DV~V~Vg~~~F~lHK~vLas~S~YFr~lf-s---------~~~~I~L~~d~PGGaeaFElv~~FcYg~~i~It~~N 106 (670)
|.-.=|.+.|||..|.--|.-|.--+.-|...| . +..--.|- |=. |.-|.-+++|.-.|++.+++--
T Consensus 18 g~s~wVRlNVGGt~f~TtktTl~rdp~sFl~rl~q~~~~l~sdrDetGAYlI-DRD--P~~FgpvLNylRhgklvl~~l~ 94 (210)
T KOG2715|consen 18 GVSLWVRLNVGGTVFLTTKTTLPRDPKSFLYRLCQREKDLPSDRDETGAYLI-DRD--PFYFGPVLNYLRHGKLVLNKLS 94 (210)
T ss_pred CceEEEEEecCCEEEEeeeeccccCcHHHHHHHHhcccCCCCCccccCceEe-ccC--cchHHHHHHHHhcchhhhhhhh
Confidence 444446678999999999999988885554443 2 11222332 333 8899999999999999999966
Q ss_pred HhhHHHHHhhcccccccccCcHHHHHHHHHHHh
Q 042001 107 VTALRCAAEFLEMTEEYCSGNLCERFDLYLNQV 139 (670)
Q Consensus 107 V~~L~cAAe~LqMte~~~~~nL~~~ce~FL~~~ 139 (670)
-..++.-|+|...+ .|+....+-+.+.
T Consensus 95 eeGvL~EAefyn~~------~li~likd~i~dR 121 (210)
T KOG2715|consen 95 EEGVLEEAEFYNDP------SLIQLIKDRIQDR 121 (210)
T ss_pred hhccchhhhccCCh------HHHHHHHHHHHHH
Confidence 67788999999886 4776655555544
No 40
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=27.04 E-value=69 Score=29.99 Aligned_cols=26 Identities=15% Similarity=0.401 Sum_probs=21.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHh
Q 042001 560 RTDYESTSFRIQNLEQELMSLKRSVV 585 (670)
Q Consensus 560 r~~~~~~~~Rv~~LEke~~~mk~~l~ 585 (670)
+.+|+..+-||..||+++..++-.++
T Consensus 82 ~~~~~~l~~rvd~Lerqv~~Lenk~k 107 (108)
T COG3937 82 QSEMDELTERVDALERQVADLENKLK 107 (108)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56889999999999999988876654
No 41
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=25.79 E-value=47 Score=29.31 Aligned_cols=16 Identities=38% Similarity=0.561 Sum_probs=14.2
Q ss_pred hhHHHHHHHHHHHccc
Q 042001 428 DQLYRAMIIFLKAHRH 443 (670)
Q Consensus 428 DgLYRAIDiYLKaHp~ 443 (670)
=.||-||+.||..|..
T Consensus 31 PQLYnAI~k~L~RHkF 46 (82)
T PF11123_consen 31 PQLYNAIGKLLDRHKF 46 (82)
T ss_pred hHHHHHHHHHHHHccc
Confidence 4799999999999974
No 42
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=25.51 E-value=1.8e+02 Score=23.24 Aligned_cols=31 Identities=23% Similarity=0.280 Sum_probs=25.5
Q ss_pred hhHHHhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 042001 557 ELSRTDYESTSFRIQNLEQELMSLKRSVVQN 587 (670)
Q Consensus 557 ~~lr~~~~~~~~Rv~~LEke~~~mk~~l~~~ 587 (670)
+.-|..++.|..+|.+|+.+...|+..+...
T Consensus 21 ~rkk~~~~~le~~~~~L~~en~~L~~~i~~L 51 (54)
T PF07716_consen 21 QRKKQREEELEQEVQELEEENEQLRQEIAQL 51 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457888899999999999999998887654
No 43
>PF06825 HSBP1: Heat shock factor binding protein 1; InterPro: IPR009643 Heat shock factor binding protein 1 (HSBP1) appears to be a negative regulator of the heat shock response [].; PDB: 3CI9_A.
Probab=25.11 E-value=46 Score=27.46 Aligned_cols=25 Identities=24% Similarity=0.270 Sum_probs=17.6
Q ss_pred hHHHhHHHHHHHHHHHHHHHHHHHH
Q 042001 558 LSRTDYESTSFRIQNLEQELMSLKR 582 (670)
Q Consensus 558 ~lr~~~~~~~~Rv~~LEke~~~mk~ 582 (670)
.+-.-||.|..||.+||+.+..+..
T Consensus 25 ~I~~riDeM~~RIDdLE~si~dl~~ 49 (54)
T PF06825_consen 25 QILGRIDEMSSRIDDLEKSIADLMT 49 (54)
T ss_dssp HHHHHHHHHHHHHHCCHHHH-----
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4667799999999999998876643
No 44
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=24.04 E-value=73 Score=37.28 Aligned_cols=24 Identities=25% Similarity=0.196 Sum_probs=21.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHH
Q 042001 560 RTDYESTSFRIQNLEQELMSLKRS 583 (670)
Q Consensus 560 r~~~~~~~~Rv~~LEke~~~mk~~ 583 (670)
|+-|.+|..||++|++||..+|++
T Consensus 301 KEy~~~Le~rLq~ll~Ene~Lk~E 324 (655)
T KOG4343|consen 301 KEYMLGLEARLQALLSENEQLKKE 324 (655)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 578899999999999999998875
No 45
>PHA01750 hypothetical protein
Probab=23.73 E-value=1.5e+02 Score=25.57 Aligned_cols=33 Identities=15% Similarity=0.289 Sum_probs=27.6
Q ss_pred hhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHhh
Q 042001 554 KSCELSRTDYESTSFRIQNLEQELMSLKRSVVQ 586 (670)
Q Consensus 554 ~~~~~lr~~~~~~~~Rv~~LEke~~~mk~~l~~ 586 (670)
.|-..|+.+++.++-|+.+||+....+|+-+.+
T Consensus 42 ~ELdNL~~ei~~~kikqDnl~~qv~eik~k~dk 74 (75)
T PHA01750 42 SELDNLKTEIEELKIKQDELSRQVEEIKRKLDK 74 (75)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcc
Confidence 345568999999999999999999999987643
No 46
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=22.71 E-value=43 Score=35.16 Aligned_cols=85 Identities=20% Similarity=0.049 Sum_probs=59.4
Q ss_pred CeEEeeccchhcccchHHHhhhc------CCCeEEeCCCCCCCHHHHHHHHHHHhcCccccccchHh---hHHHHHhhcc
Q 042001 48 NRTFNLHKFPLFSKSGYFKKRLN------ESNEYELPQHFPGGPETFEMIVLFIYGSSTLIDPFNVT---ALRCAAEFLE 118 (670)
Q Consensus 48 ~~~F~lHK~vLas~S~YFr~lfs------~~~~I~L~~d~PGGaeaFElv~~FcYg~~i~It~~NV~---~L~cAAe~Lq 118 (670)
+..+..|+.+++++++-|+.++. ....+.+. +.. ++.|+.+..|.|...-.-+..++- ++.++|.-.+
T Consensus 109 ~g~~~~~~~~~~a~~~V~~~~~~~d~~~~~~~~~~~~-d~~--~~~~~~~~~F~~~~s~~~~~~~~~~~~~~~a~~f~~~ 185 (297)
T KOG1987|consen 109 NGFLVAHKLVLVARSEVFEAMGKSDVFKESSKLITLL-EEK--PEVLEALNGFQVLPSQVSSVERIFEKHPDLAAAFKYK 185 (297)
T ss_pred CcEEEcCceEEEeeecceeeecccccchhcccccccc-ccc--hhhHhhhceEEEeccchHHHHHhhcCChhhhhccccc
Confidence 45599999999999999999873 12233443 444 888999999998754433444443 6666666666
Q ss_pred cccccccCcHHHHHHHHHHHhhh
Q 042001 119 MTEEYCSGNLCERFDLYLNQVVF 141 (670)
Q Consensus 119 Mte~~~~~nL~~~ce~FL~~~v~ 141 (670)
-. .|...|...|.+.+.
T Consensus 186 ~~------~lk~~~~~~l~~~~~ 202 (297)
T KOG1987|consen 186 NR------HLKLACMPVLLSLIE 202 (297)
T ss_pred cH------HHHHHHHHHHHHHHH
Confidence 53 688888888887664
No 47
>PF12001 DUF3496: Domain of unknown function (DUF3496); InterPro: IPR021885 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 110 amino acids in length.
Probab=22.58 E-value=78 Score=29.77 Aligned_cols=19 Identities=42% Similarity=0.637 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 042001 565 STSFRIQNLEQELMSLKRS 583 (670)
Q Consensus 565 ~~~~Rv~~LEke~~~mk~~ 583 (670)
.|..||++||-|++.||..
T Consensus 4 QmElrIkdLeselsk~Kts 22 (111)
T PF12001_consen 4 QMELRIKDLESELSKMKTS 22 (111)
T ss_pred HHHHHHHHHHHHHHHhHhH
Confidence 3778999999999999953
No 48
>PF09593 Pathogen_betaC1: Beta-satellite pathogenicity beta C1 protein; InterPro: IPR018583 Cotton leaf-curl disease - CLCuD - is of major economic importance in cotton-growing areas of the far-east. The infectious agent appears to be a single-stranded DNA molecule of approx 1350 nucleotides in length, which, when inoculated with the Begomovirus into cotton, induces symptoms typical of CLCuD. This molecule requires the Begomovirus for replication and encapsidation []. DNA beta encodes a single protein, betaC1. The intracellular distribution of betaC1 is consistent with the hypothesis that it has a role in transporting the DNA A of Begomovirus from the nuclear site of replication to the plasmodesmatal exit sites of the infected cell. The DNA beta-encoded protein, betaC1, is the determinant of both pathogenicity and suppression of gene silencing [].
Probab=22.52 E-value=1.5e+02 Score=28.13 Aligned_cols=72 Identities=19% Similarity=0.232 Sum_probs=49.4
Q ss_pred CCeEEeeccchhcccchHHHhh-h--c-CCCeEEeCCCCCCCHHHHHHHHHHHhcCccccccchHhhHHHHHhhccc
Q 042001 47 GNRTFNLHKFPLFSKSGYFKKR-L--N-ESNEYELPQHFPGGPETFEMIVLFIYGSSTLIDPFNVTALRCAAEFLEM 119 (670)
Q Consensus 47 g~~~F~lHK~vLas~S~YFr~l-f--s-~~~~I~L~~d~PGGaeaFElv~~FcYg~~i~It~~NV~~L~cAAe~LqM 119 (670)
++..|.+|--+++.+||.+.+. | . .-..+..|=||.|--++....++|.|.+. .+...--..+..+-+.|=|
T Consensus 20 ~~~~i~V~i~l~ST~sP~l~k~~f~IpY~~~~ii~PFDFNglEe~I~~~l~~mY~~s-~~~efk~EDmve~IDIlmm 95 (117)
T PF09593_consen 20 EDMSIFVHIQLFSTRSPALIKKKFIIPYTHEGIIPPFDFNGLEEGIKNTLKIMYKDS-KIEEFKQEDMVEAIDILMM 95 (117)
T ss_pred CCCEEEEEEEEEECCChHHheEEEEEeccCCCeECCcccCcHHHHHHHHHHHHhCCC-CcccccHHHHHhhhheeee
Confidence 5789999999999999999873 2 1 22334444489988999999999999864 2333333334444444444
No 49
>PF10932 DUF2783: Protein of unknown function (DUF2783); InterPro: IPR021233 This is a bacterial family of uncharacterised protein.
Probab=20.62 E-value=78 Score=26.76 Aligned_cols=21 Identities=43% Similarity=0.759 Sum_probs=17.7
Q ss_pred chhHHHHHHHHHHHccccchhhhc
Q 042001 427 HDQLYRAMIIFLKAHRHLSQEEKG 450 (670)
Q Consensus 427 hDgLYRAIDiYLKaHp~lse~Er~ 450 (670)
.|+.|.+ .+.+|.+||++|-.
T Consensus 10 pD~fY~~---Li~aH~gLs~e~S~ 30 (60)
T PF10932_consen 10 PDDFYEA---LIEAHRGLSDEQSA 30 (60)
T ss_pred hhHHHHH---HHHHHhCCCHHHHH
Confidence 4999998 58899999999854
Done!