Query 042001
Match_columns 670
No_of_seqs 274 out of 810
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 22:28:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042001.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042001hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3i3n_A Kelch-like protein 11; 99.9 1.3E-22 4.5E-27 207.6 13.5 237 14-332 8-263 (279)
2 3hve_A Gigaxonin; ubiquitin, c 99.9 4E-23 1.4E-27 208.6 9.3 237 14-332 7-256 (256)
3 1buo_A POZ domain, protein (pr 99.9 1E-21 3.5E-26 177.7 11.7 116 15-140 5-121 (121)
4 2z8h_A Transcription regulator 99.8 3.6E-21 1.2E-25 178.1 11.5 120 14-142 12-135 (138)
5 2vpk_A Myoneurin; transcriptio 99.8 3E-21 1E-25 172.9 9.7 112 17-138 1-116 (116)
6 3b84_A Zinc finger and BTB dom 99.8 1.8E-21 6E-26 175.8 8.2 110 19-139 5-117 (119)
7 2yy9_A Zinc finger and BTB dom 99.8 1.8E-21 6.3E-26 179.8 8.3 114 18-142 5-121 (135)
8 1r29_A B-cell lymphoma 6 prote 99.8 9.7E-21 3.3E-25 172.1 11.8 115 14-138 5-125 (127)
9 2q81_A MIZ-1 protein; BTB/POZ 99.8 3.1E-21 1.1E-25 174.3 7.8 109 18-137 7-117 (119)
10 2if5_A Zinc finger and BTB dom 99.8 1.5E-20 5.3E-25 169.0 11.4 110 18-137 5-120 (120)
11 3htm_A Speckle-type POZ protei 99.8 2.5E-20 8.6E-25 176.2 13.1 129 29-175 24-161 (172)
12 3ohu_A Transcription regulator 99.8 3.1E-21 1.1E-25 175.0 5.5 114 13-136 7-125 (125)
13 2ppi_A Gigaxonin; BTB domain, 99.8 1.4E-20 4.9E-25 176.0 10.0 115 13-137 22-144 (144)
14 2ihc_A Transcription regulator 99.8 4.4E-21 1.5E-25 174.4 5.7 113 15-137 6-123 (124)
15 3ga1_A Nucleus accumbens-assoc 99.8 8.2E-21 2.8E-25 173.5 7.6 114 17-140 12-128 (129)
16 4eoz_A Speckle-type POZ protei 99.8 7.3E-21 2.5E-25 175.1 7.3 120 29-166 15-140 (145)
17 3m5b_A Zinc finger and BTB dom 99.8 2.8E-20 9.7E-25 169.2 9.3 94 34-139 25-118 (119)
18 2vkp_A BTB/POZ domain-containi 99.8 4.4E-20 1.5E-24 162.8 9.9 99 33-140 2-109 (109)
19 3fkc_A Transcriptional regulat 99.8 7E-19 2.4E-23 158.7 9.9 103 14-120 7-111 (116)
20 3hqi_A Speckle-type POZ protei 99.7 6.1E-18 2.1E-22 175.2 12.9 130 29-176 164-302 (312)
21 2ast_A S-phase kinase-associat 99.2 1.1E-11 3.9E-16 118.2 8.6 91 42-142 3-128 (159)
22 4ajy_C Transcription elongatio 99.1 3E-10 1E-14 99.9 8.2 74 42-119 4-97 (97)
23 1fs1_B SKP1, cyclin A/CDK2-ass 99.0 7.1E-10 2.4E-14 104.0 8.0 91 42-142 4-123 (141)
24 2p1m_A SKP1-like protein 1A; F 98.8 1.2E-09 4.1E-14 104.4 1.9 91 42-142 6-127 (160)
25 2fnj_C Transcription elongatio 98.1 5.5E-06 1.9E-10 72.8 6.5 74 42-119 3-96 (96)
26 3v7d_A Suppressor of kinetocho 98.0 1.3E-05 4.3E-10 77.4 9.0 91 41-141 8-134 (169)
27 1hv2_A Elongin C, ELC1; protei 98.0 7E-06 2.4E-10 72.6 6.6 75 41-119 5-99 (99)
28 3drz_A BTB/POZ domain-containi 97.5 0.00048 1.7E-08 61.4 9.8 89 40-138 6-106 (107)
29 1vcb_B Protein (elongin C); tu 97.4 0.00014 4.8E-09 65.8 5.8 75 41-119 18-112 (112)
30 3drx_A BTB/POZ domain-containi 95.6 0.036 1.2E-06 55.1 8.8 89 41-139 13-113 (202)
31 3kvt_A Potassium channel prote 94.6 0.027 9.2E-07 51.0 4.4 76 42-121 7-91 (115)
32 1s1g_A Potassium voltage-gated 93.4 0.14 4.7E-06 47.0 6.6 78 40-121 13-98 (124)
33 1t1d_A Protein (potassium chan 93.0 0.23 7.9E-06 43.8 7.2 76 42-121 3-88 (100)
34 1nn7_A Potassium channel KV4.2 92.7 0.1 3.4E-06 46.4 4.4 83 42-133 2-92 (105)
35 2nz0_B Potassium voltage-gated 92.4 0.14 4.7E-06 48.0 5.2 80 38-121 33-120 (140)
36 3vmx_A Voltage-gated hydrogen 79.1 2.6 9.1E-05 32.6 4.6 34 556-589 6-39 (48)
37 1pd7_B MAD1; PAH2, SIN3, eukar 64.2 2.1 7E-05 29.1 0.8 16 105-120 3-18 (26)
38 1deb_A APC protein, adenomatou 63.0 12 0.00042 29.2 5.0 37 551-587 14-50 (54)
39 2yy0_A C-MYC-binding protein; 61.6 10 0.00036 29.7 4.6 32 556-587 21-52 (53)
40 1vjh_A BET V I allergen family 55.0 9.2 0.00032 34.2 3.7 33 400-443 90-122 (122)
41 2r9r_B Paddle chimera voltage 52.7 31 0.0011 38.2 8.3 78 40-121 52-139 (514)
42 3a2a_A Voltage-gated hydrogen 50.3 19 0.00065 28.6 4.2 39 552-590 9-47 (58)
43 2eqx_A Kelch repeat and BTB do 32.6 32 0.0011 29.7 3.4 35 101-141 7-41 (105)
44 1zme_C Proline utilization tra 30.3 41 0.0014 26.5 3.5 26 560-585 43-68 (70)
45 1ci6_A Transcription factor AT 28.0 76 0.0026 25.4 4.7 28 557-584 33-60 (63)
46 1dip_A Delta-sleep-inducing pe 26.9 59 0.002 27.4 3.8 32 553-584 14-45 (78)
47 3htm_A Speckle-type POZ protei 25.0 85 0.0029 28.3 5.1 46 87-141 120-165 (172)
48 2wt7_A Proto-oncogene protein 23.4 1E+02 0.0034 24.6 4.6 29 558-586 34-62 (63)
49 2xv5_A Lamin-A/C; structural p 21.4 1E+02 0.0035 25.7 4.3 29 559-587 3-31 (74)
50 1go4_E MAD1 (mitotic arrest de 20.8 97 0.0033 27.4 4.3 28 560-587 11-38 (100)
51 1e09_A PRU AV 1; allergen, maj 20.6 57 0.002 30.1 3.0 37 400-444 121-157 (159)
No 1
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A
Probab=99.88 E-value=1.3e-22 Score=207.57 Aligned_cols=237 Identities=16% Similarity=0.227 Sum_probs=171.8
Q ss_pred CCCCCccchH-HHHHHhHhhhhhcCCCeeEEEEEC---CeEEeeccchhcccchHHHhhhcC------CCeEEeCC----
Q 042001 14 SPFSSPNISA-LLKIKIVSWSQETGLPVSIRVRVG---NRTFNLHKFPLFSKSGYFKKRLNE------SNEYELPQ---- 79 (670)
Q Consensus 14 ~~~ss~~~~~-ll~~r~~~w~r~~g~~~DV~V~Vg---~~~F~lHK~vLas~S~YFr~lfs~------~~~I~L~~---- 79 (670)
..|.++.|+. +++ ..+.+|.+|.+|||+|.|| |++|++||.+|+++|+||++||+. ..+|+|+.
T Consensus 8 ~~~~~~~h~~~ll~--~l~~l~~~~~~~Dv~l~v~~~~~~~f~~Hr~vLaa~S~yF~~mf~~~~~e~~~~~i~l~~~~~~ 85 (279)
T 3i3n_A 8 EDFECSSHCSELSW--RQNEQRRQGLFCDITLCFGGAGGREFRAHRSVLAAATEYFTPLLSGQFSESRSGRVEMRKWSSE 85 (279)
T ss_dssp EEEECTTHHHHHHH--HHHHHHHHTTTCCEEEECC----CEEEECHHHHHHHCTTSGGGCCC--------EEECCCCSST
T ss_pred cCcCCHhHHHHHHH--HHHHHHhcCCCCCeEEEEcCCCCeEEehHHHHHHHcCHHHHHHhcCCCccccCCeEEecccccc
Confidence 5678888887 444 5778999999999999998 999999999999999999999942 36788851
Q ss_pred -CCCCCHHHHHHHHHHHhcCccccccchHhhHHHHHhhcccccccccCcHHHHHHHHHHHhhhcchhhHHHHHhhccchh
Q 042001 80 -HFPGGPETFEMIVLFIYGSSTLIDPFNVTALRCAAEFLEMTEEYCSGNLCERFDLYLNQVVFQSWDDTLIVLQRCQTLL 158 (670)
Q Consensus 80 -d~PGGaeaFElv~~FcYg~~i~It~~NV~~L~cAAe~LqMte~~~~~nL~~~ce~FL~~~v~~sw~dslavL~sC~~Ll 158 (670)
+++ +++|+.+++|+||+.+.+++.||..|+.||.+|||+ .|++.|+.||.+.+.. .+|..++
T Consensus 86 ~~v~--~~~f~~ll~~~Ytg~~~i~~~~v~~ll~~A~~l~i~------~L~~~c~~~L~~~l~~---------~n~~~i~ 148 (279)
T 3i3n_A 86 PGPE--PDTVEAVIEYMYTGRIRVSTGSVHEVLELADRFLLI------RLKEFCGEFLKKKLHL---------SNCVAIH 148 (279)
T ss_dssp TCSC--HHHHHHHHHHHHHSEEEEETTTHHHHHHHHHHTTCH------HHHHHHHHHHHHHCCT---------TTHHHHH
T ss_pred CCCC--HHHHHHHHHhhCcCCcccCHHHHHHHHHHHHHHCcH------HHHHHHHHHHHHcCCc---------chHHHHH
Confidence 455 999999999999999999999999999999999996 5999999999998876 5788888
Q ss_pred hhhHhhc---hHHHHHHHHHHHhhhhccCcccccCCCchhhhhhccccccccccCCcCCcchhhhhhccCChHHHHHHHH
Q 042001 159 PSTEELL---IVSRCIESLAFMACMEILDPERRREKPVVTLEALTSQAWCCERVKGIVSQELWIKDLLALPFGFFRRIIG 235 (670)
Q Consensus 159 ~~Ae~l~---Iv~RCidsLA~kAc~e~~~p~~~~~~P~~~~~~~~~~~~s~~~~~~~~~~dWW~eDL~~L~~dlf~rvI~ 235 (670)
.+|+.++ +...|.+-|+..... + +--++...||.+....++.
T Consensus 149 ~~A~~~~~~~L~~~~~~~i~~~f~~-v----------------------------------~~~~~f~~L~~~~l~~lL~ 193 (279)
T 3i3n_A 149 SLAHMYTLSQLALKAADMIRRNFHK-V----------------------------------IQDEEFYTLPFHLIRDWLS 193 (279)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTHHH-H----------------------------------TTSSGGGGSCHHHHHHHHT
T ss_pred HHHHHcCcHHHHHHHHHHHHHHHHH-H----------------------------------hcCcChhcCCHHHHHHHhc
Confidence 8888876 455555555422110 0 0013566788888777765
Q ss_pred HHHHcCCC-CcchhHHHHHHHHHhhccccccccccCCCCCCCCccccccchhHHHHHHhcCCccccCCCcccHHHHHHHH
Q 042001 236 SLRRQGMK-EKYVNPIIVFYANKWLLYKKTRQFWENSDDKSGDKDTNSKCSEILQGILDLLPLQEKASRVIPVGFYFALL 314 (670)
Q Consensus 236 am~~kg~~-~~~I~~~l~~YA~kwl~~~~~~~~~~~s~~~~~~~~~~~k~r~lLEtiV~lLP~e~k~~~~vsc~FLf~LL 314 (670)
.-.- .+. +..|-.+ +.+|+-.... ..+..+..+...+-. +.+|..+|..++
T Consensus 194 ~d~L-~v~sE~~vf~a----v~~W~~~~~~------------------~r~~~~~~ll~~VRf-----~l~~~~~L~~~v 245 (279)
T 3i3n_A 194 DLEI-TVDSEEVLFET----VLKWVQRNAE------------------ERERYFEELFKLLRL-----SQMKPTYLTRHV 245 (279)
T ss_dssp CSSC-CCSCHHHHHHH----HHHHHHTTHH------------------HHTTTHHHHHTTSCG-----GGSCHHHHHHTT
T ss_pred CcCC-CCCCHHHHHHH----HHHHHHcCHH------------------HHHHHHHHHHHhcCC-----CCCCHHHHHHHh
Confidence 4111 122 3334444 4566632100 012334455554422 468899999999
Q ss_pred HHHHhcCCCHHHHHHHHH
Q 042001 315 SRSLEVGLRSDSRAKLQE 332 (670)
Q Consensus 315 r~A~~l~as~~cr~~LE~ 332 (670)
+..-.+..++.|+.-|..
T Consensus 246 ~~~~l~~~~~~c~~~l~e 263 (279)
T 3i3n_A 246 KPERLVANNEVCVKLVAD 263 (279)
T ss_dssp TTSHHHHTCHHHHHHHHH
T ss_pred hccchhcCCHHHHHHHHH
Confidence 888788888999877654
No 2
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B
Probab=99.88 E-value=4e-23 Score=208.65 Aligned_cols=237 Identities=15% Similarity=0.165 Sum_probs=156.5
Q ss_pred CCCCCccchH-HHHHHhHhhhhhcCCCeeEEEEECCeEEeeccchhcccchHHHhhhc--------CCCeEEeCCCCCCC
Q 042001 14 SPFSSPNISA-LLKIKIVSWSQETGLPVSIRVRVGNRTFNLHKFPLFSKSGYFKKRLN--------ESNEYELPQHFPGG 84 (670)
Q Consensus 14 ~~~ss~~~~~-ll~~r~~~w~r~~g~~~DV~V~Vg~~~F~lHK~vLas~S~YFr~lfs--------~~~~I~L~~d~PGG 84 (670)
.+++++.|+. +++ ..+.++.++.+|||+|.|||+.|++||.+|+++|+||++||+ ...+|+|+ +++
T Consensus 7 ~~~~~~~~~~~l~~--~l~~l~~~~~~~Dv~l~v~~~~f~~Hr~vLaa~S~yF~~mf~~~~~~~e~~~~~i~l~-~v~-- 81 (256)
T 3hve_A 7 SAVSDPQHAARLLR--ALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELE-GIS-- 81 (256)
T ss_dssp ---CCTTTHHHHHH--HHHTCCC--CCCCEEEEETTEEEEECHHHHHTTCHHHHHTC-----------CEEECS-SCC--
T ss_pred CccCChHHHHHHHH--HHHHHHhcCCCcceEEEECCEEEechHHHHHHcCHHHHHHhCCCCCcccCCCCeEEeC-CCC--
Confidence 5678888887 444 677899999999999999999999999999999999999994 23578997 898
Q ss_pred HHHHHHHHHHHhcCccccccchHhhHHHHHhhcccccccccCcHHHHHHHHHHHhhhcchhhHHHHHhhccchhhhhHhh
Q 042001 85 PETFEMIVLFIYGSSTLIDPFNVTALRCAAEFLEMTEEYCSGNLCERFDLYLNQVVFQSWDDTLIVLQRCQTLLPSTEEL 164 (670)
Q Consensus 85 aeaFElv~~FcYg~~i~It~~NV~~L~cAAe~LqMte~~~~~nL~~~ce~FL~~~v~~sw~dslavL~sC~~Ll~~Ae~l 164 (670)
+++|+.+++|+||+++.++.+||..|+.||.+|||+ .|++.|+.||.+.+.+ .+|..++.+|+.+
T Consensus 82 ~~~f~~ll~~~Yt~~~~i~~~~v~~ll~~A~~l~i~------~l~~~c~~~L~~~l~~---------~n~~~i~~~A~~~ 146 (256)
T 3hve_A 82 VMVMREILDYIFSGQIRLNEDTIQDVVQAADLLLLT------DLKTLCCEFLEGCIAA---------ENCIGIRDFALHY 146 (256)
T ss_dssp HHHHHHHHHHHHHSCCCCC-CCHHHHHHHHHHHTCH------HHHHHHHHHHHHTCCS---------STTHHHHHHHHHT
T ss_pred HHHHHHHHhhccCCCCcccHhHHHHHHHHHHHHChH------HHHHHHHHHHHhhCCH---------hhHHHHHHHHHHc
Confidence 999999999999999999999999999999999997 5999999999999876 4788888888887
Q ss_pred c---hHHHHHHHHHHHhhhhccCcccccCCCchhhhhhccccccccccCCcCCcchhhhhhccCChHHHHHHHHHHHHcC
Q 042001 165 L---IVSRCIESLAFMACMEILDPERRREKPVVTLEALTSQAWCCERVKGIVSQELWIKDLLALPFGFFRRIIGSLRRQG 241 (670)
Q Consensus 165 ~---Iv~RCidsLA~kAc~e~~~p~~~~~~P~~~~~~~~~~~~s~~~~~~~~~~dWW~eDL~~L~~dlf~rvI~am~~kg 241 (670)
+ +...|.+-|+..... + +--++...||.+....++..=.-.-
T Consensus 147 ~~~~L~~~~~~~i~~~f~~-v----------------------------------~~~~~f~~L~~~~l~~lL~~d~L~v 191 (256)
T 3hve_A 147 CLHHVHYLATEYLETHFRD-V----------------------------------SSTEEFLELSPQKLKEVISLEKLNV 191 (256)
T ss_dssp TCHHHHHHHHHHHHHHHHH-H----------------------------------TTCHHHHSSCHHHHHHHHHCC----
T ss_pred CcHHHHHHHHHHHHHHHHH-H----------------------------------hCCcchhcCCHHHHHHHHccCCCCC
Confidence 6 444555544432211 0 0013667889888888876532222
Q ss_pred CCCcchhHHHHHHHHHhhccccccccccCCCCCCCCccccccchhHHHHHHhcCCccccCCCcccHHHHHHHHHHHHhcC
Q 042001 242 MKEKYVNPIIVFYANKWLLYKKTRQFWENSDDKSGDKDTNSKCSEILQGILDLLPLQEKASRVIPVGFYFALLSRSLEVG 321 (670)
Q Consensus 242 ~~~~~I~~~l~~YA~kwl~~~~~~~~~~~s~~~~~~~~~~~k~r~lLEtiV~lLP~e~k~~~~vsc~FLf~LLr~A~~l~ 321 (670)
.++..|-.++ .+|+-.... . .......+++.| .+ +.+|..||...+..--.+.
T Consensus 192 ~~E~~v~~av----~~W~~~~~~-------------~-R~~~~~~ll~~V-Rf--------~~l~~~~l~~~v~~~~l~~ 244 (256)
T 3hve_A 192 GNERYVFEAV----IRWIAHDTE-------------I-RKVHMKDVMSAL-WV--------SGLDSSYLREQMLNEPLVR 244 (256)
T ss_dssp ---CTTHHHH----TTTCCC--C-------------C-STTTHHHHHHHH-HH--------HTTCC-CHHHHHHTSTTHH
T ss_pred CCHHHHHHHH----HHHHHcCHH-------------H-HHHHHHHHHHhC-CC--------CCCCHHHHHHHHhcChHHH
Confidence 2344555544 577743200 0 000112445444 22 2355567777776655555
Q ss_pred CC-HHHHHHHHH
Q 042001 322 LR-SDSRAKLQE 332 (670)
Q Consensus 322 as-~~cr~~LE~ 332 (670)
.+ ++|+.-|++
T Consensus 245 ~~~~~c~~ll~~ 256 (256)
T 3hve_A 245 EIVKECSNIPLS 256 (256)
T ss_dssp HHHCC-------
T ss_pred hhHHHHHHHhhC
Confidence 55 467766553
No 3
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A
Probab=99.86 E-value=1e-21 Score=177.68 Aligned_cols=116 Identities=22% Similarity=0.314 Sum_probs=103.4
Q ss_pred CCCCccchHHHHHHhHhhhhhcCCCeeEEEEECCeEEeeccchhcccchHHHhhhc-CCCeEEeCCCCCCCHHHHHHHHH
Q 042001 15 PFSSPNISALLKIKIVSWSQETGLPVSIRVRVGNRTFNLHKFPLFSKSGYFKKRLN-ESNEYELPQHFPGGPETFEMIVL 93 (670)
Q Consensus 15 ~~ss~~~~~ll~~r~~~w~r~~g~~~DV~V~Vg~~~F~lHK~vLas~S~YFr~lfs-~~~~I~L~~d~PGGaeaFElv~~ 93 (670)
.|.+|.++..+.. ..+.++.++.+|||+|.|+|++|++||.+|+++|+||++||. +..+|+|+ +++ +++|+.+++
T Consensus 5 ~~~~~~~~~~l~~-~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~~~i~l~-~~~--~~~f~~ll~ 80 (121)
T 1buo_A 5 QLQNPSHPTGLLC-KANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILFHRNSQHYTLD-FLS--PKTFQQILE 80 (121)
T ss_dssp CCCCTTHHHHHHH-HHHHHHHHTTTCCEEEEESSCEEEECHHHHHHHCHHHHHHTTSCCSEEEEC-SSC--HHHHHHHHH
T ss_pred eccCcchHHHHHH-HHHHHHhcCCCCCEEEEECCEEEehhHHHHhhcCHHHHHHHcCCCcEEEeC-CCC--HHHHHHHHH
Confidence 4566677763332 566789999999999999999999999999999999999995 56789997 898 999999999
Q ss_pred HHhcCccccccchHhhHHHHHhhcccccccccCcHHHHHHHHHHHhh
Q 042001 94 FIYGSSTLIDPFNVTALRCAAEFLEMTEEYCSGNLCERFDLYLNQVV 140 (670)
Q Consensus 94 FcYg~~i~It~~NV~~L~cAAe~LqMte~~~~~nL~~~ce~FL~~~v 140 (670)
|+||+++.++++||..|+.||++|+|+ .|.+.|+.||.+.+
T Consensus 81 ~~Ytg~~~~~~~~~~~ll~~A~~~~i~------~L~~~c~~~l~~~I 121 (121)
T 1buo_A 81 YAYTATLQAKAEDLDDLLYAAEILEIE------YLEEQCLKMLETIQ 121 (121)
T ss_dssp HHHHSCCCCCGGGHHHHHHHHHHHTCH------HHHHHHHHHHHHHC
T ss_pred hhcCCCcCCCHHHHHHHHHHHHHHCCH------HHHHHHHHHHHHhC
Confidence 999999999999999999999999996 59999999998753
No 4
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus}
Probab=99.85 E-value=3.6e-21 Score=178.07 Aligned_cols=120 Identities=21% Similarity=0.301 Sum_probs=105.5
Q ss_pred CCCCCccchHHHHHHhHhhhhhcCCCeeEEEEECCeEEeeccchhcccchHHHhhhcC----CCeEEeCCCCCCCHHHHH
Q 042001 14 SPFSSPNISALLKIKIVSWSQETGLPVSIRVRVGNRTFNLHKFPLFSKSGYFKKRLNE----SNEYELPQHFPGGPETFE 89 (670)
Q Consensus 14 ~~~ss~~~~~ll~~r~~~w~r~~g~~~DV~V~Vg~~~F~lHK~vLas~S~YFr~lfs~----~~~I~L~~d~PGGaeaFE 89 (670)
-.|..+.++..+.. ....++.++.+|||+|.|+|+.|++||.+|+++|+||++||.. ..+|.|+.+++ +++|+
T Consensus 12 ~~~~~~~~~~~l~~-~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~~e~~~i~l~~~v~--~~~~~ 88 (138)
T 2z8h_A 12 FAYESSVHSTNVLL-SLNDQRKKDVLCDVTVLVEGQRFRAHRSVLAACSSYFHSRIVGQTDAELTVTLPEEVT--VKGFE 88 (138)
T ss_dssp CCCCCSSHHHHHHH-HHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTCCCTTEEEECCTTSC--HHHHH
T ss_pred eEecCCchHHHHHH-HHHHHHhhCCCcCeEEEECCEEEechHHHHHHcCHHHHHHHhcCCCCCceEEeCCCCC--HHHHH
Confidence 45667777763332 5778999999999999999999999999999999999999953 25688854788 99999
Q ss_pred HHHHHHhcCccccccchHhhHHHHHhhcccccccccCcHHHHHHHHHHHhhhc
Q 042001 90 MIVLFIYGSSTLIDPFNVTALRCAAEFLEMTEEYCSGNLCERFDLYLNQVVFQ 142 (670)
Q Consensus 90 lv~~FcYg~~i~It~~NV~~L~cAAe~LqMte~~~~~nL~~~ce~FL~~~v~~ 142 (670)
.+++|+||+++.|+++||..|+.||++|||+ .|++.|+.||.+.+..
T Consensus 89 ~lL~~~Ytg~~~i~~~~v~~ll~~A~~~~i~------~L~~~C~~~l~~~l~~ 135 (138)
T 2z8h_A 89 PLIQFAYTAKLILSKDNVDEVCRCVEFLSVH------NIEESCFQFLKFKFLD 135 (138)
T ss_dssp HHHHHHHHSCCCCCTTTHHHHHHHHHHHTCG------GGHHHHHHHTTCCCSC
T ss_pred HHHHHhcCCCcccCHHHHHHHHHHHHHhCCH------HHHHHHHHHHHHhccc
Confidence 9999999999999999999999999999996 5999999999988765
No 5
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Probab=99.84 E-value=3e-21 Score=172.85 Aligned_cols=112 Identities=22% Similarity=0.388 Sum_probs=97.4
Q ss_pred CCccchH-HHHHHhHhhhhhcCCCeeEEEEECCeEEeeccchhcccchHHHhhhcC--CCeEEeC-CCCCCCHHHHHHHH
Q 042001 17 SSPNISA-LLKIKIVSWSQETGLPVSIRVRVGNRTFNLHKFPLFSKSGYFKKRLNE--SNEYELP-QHFPGGPETFEMIV 92 (670)
Q Consensus 17 ss~~~~~-ll~~r~~~w~r~~g~~~DV~V~Vg~~~F~lHK~vLas~S~YFr~lfs~--~~~I~L~-~d~PGGaeaFElv~ 92 (670)
|.|.|+. +++ ....++.+|.+|||+|.|||+.|++||.+|+++|+||++||.. ..+|.|+ .+++ +++|+.++
T Consensus 1 s~~~h~~~l~~--~l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~~f~~~~~~~i~l~~~~~~--~~~f~~ll 76 (116)
T 2vpk_A 1 SMSHHCEHLLE--RLNKQREAGFLCDCTIVIGEFQFKAHRNVLASFSEYFGAIYRSTSENNVFLDQSQVK--ADGFQKLL 76 (116)
T ss_dssp CHHHHHHHHHH--HHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTCCCSCEECCTTTCC--HHHHHHHH
T ss_pred CchhHHHHHHH--HHHHHHhcCCCCcEEEEECCEEEeccHHHHhhcCHHHHHHHcCCCCCeEEeecCCCC--HHHHHHHH
Confidence 3456665 444 5677999999999999999999999999999999999999964 5667773 1576 99999999
Q ss_pred HHHhcCccccccchHhhHHHHHhhcccccccccCcHHHHHHHHHHH
Q 042001 93 LFIYGSSTLIDPFNVTALRCAAEFLEMTEEYCSGNLCERFDLYLNQ 138 (670)
Q Consensus 93 ~FcYg~~i~It~~NV~~L~cAAe~LqMte~~~~~nL~~~ce~FL~~ 138 (670)
+|+||+++.++++||..|+.||++|||+ .|++.|++||.+
T Consensus 77 ~~~Yt~~~~~~~~~v~~ll~~A~~~~i~------~L~~~C~~~l~~ 116 (116)
T 2vpk_A 77 EFIYTGTLNLDSWNVKEIHQAADYLKVE------EVVTKCKIKMED 116 (116)
T ss_dssp HHHHHSCCCCCTTTHHHHHHHHHHTTCH------HHHHHHHHHHC-
T ss_pred HHHcCCCcccCHHHHHHHHHHHHHhCCH------HHHHHHHHHHhC
Confidence 9999999999999999999999999996 599999999863
No 6
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}
Probab=99.84 E-value=1.8e-21 Score=175.85 Aligned_cols=110 Identities=20% Similarity=0.217 Sum_probs=97.1
Q ss_pred ccchH-HHHHHhHhhhhhcCCCeeEEEEECCeEEeeccchhcccchHHHhhhcC--CCeEEeCCCCCCCHHHHHHHHHHH
Q 042001 19 PNISA-LLKIKIVSWSQETGLPVSIRVRVGNRTFNLHKFPLFSKSGYFKKRLNE--SNEYELPQHFPGGPETFEMIVLFI 95 (670)
Q Consensus 19 ~~~~~-ll~~r~~~w~r~~g~~~DV~V~Vg~~~F~lHK~vLas~S~YFr~lfs~--~~~I~L~~d~PGGaeaFElv~~Fc 95 (670)
|.|+. +++ ..+.++.+|.+|||+|.|||++|++||.+|+++|+||++||.. ..+|+|+ +++ +++|+.+++|+
T Consensus 5 ~~h~~~l~~--~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~~~~i~l~-~~~--~~~f~~ll~~i 79 (119)
T 3b84_A 5 VQHSVRVLQ--ELNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQSLYGDGSGGSVVLP-AGF--AEIFGLLLDFF 79 (119)
T ss_dssp HHHHHHHHH--HHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTTTCCCEEEC-GGG--HHHHHHHHHHH
T ss_pred chHHHHHHH--HHHHHHhcCCCcceEEEECCEEEEeeHHHHhhcCHHHHHHHCCCCCCeEEeC-CCC--HHHHHHHHHHH
Confidence 34444 444 5667999999999999999999999999999999999999954 5789997 898 99999999999
Q ss_pred hcCccccccchHhhHHHHHhhcccccccccCcHHHHHHHHHHHh
Q 042001 96 YGSSTLIDPFNVTALRCAAEFLEMTEEYCSGNLCERFDLYLNQV 139 (670)
Q Consensus 96 Yg~~i~It~~NV~~L~cAAe~LqMte~~~~~nL~~~ce~FL~~~ 139 (670)
||+++.++++||..|+.||++|+|+ .|++.|+.||.+.
T Consensus 80 Ytg~~~~~~~~v~~ll~~A~~~~i~------~L~~~C~~~l~~~ 117 (119)
T 3b84_A 80 YTGHLALTSGNRDQVLLAARELRVP------EAVELCQSFKPKT 117 (119)
T ss_dssp HHSCCCCCTTTHHHHHHHHHHTTCH------HHHHHHHHCC---
T ss_pred cCCCCccCHHHHHHHHHHHHHhCcH------HHHHHHHHHHHHc
Confidence 9999999999999999999999996 5999999999864
No 7
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus}
Probab=99.84 E-value=1.8e-21 Score=179.84 Aligned_cols=114 Identities=21% Similarity=0.230 Sum_probs=97.2
Q ss_pred CccchH-HHHHHhHhhhhhcCCCeeEEEEECCeEEeeccchhcccchHHHhhhcC--CCeEEeCCCCCCCHHHHHHHHHH
Q 042001 18 SPNISA-LLKIKIVSWSQETGLPVSIRVRVGNRTFNLHKFPLFSKSGYFKKRLNE--SNEYELPQHFPGGPETFEMIVLF 94 (670)
Q Consensus 18 s~~~~~-ll~~r~~~w~r~~g~~~DV~V~Vg~~~F~lHK~vLas~S~YFr~lfs~--~~~I~L~~d~PGGaeaFElv~~F 94 (670)
++.|+. +++ ..+.++.++.+|||+|.|+|++|++||.+|+++|+||++||.. ..+|+|+ +++ +++|+.+++|
T Consensus 5 ~~~h~~~l~~--~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~mf~~~~~~~i~l~-~~~--~~~f~~lL~f 79 (135)
T 2yy9_A 5 SSGHSVRVLQ--ELNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQRIYGDGTGGSVVLP-AGF--AEIFGLLLDF 79 (135)
T ss_dssp --CHHHHHHH--HHHHHHHTTTTCCEEEEETTEEEEECHHHHHHHCHHHHHTCC----CCEEEC-GGG--HHHHHHHHHH
T ss_pred cccHHHHHHH--HHHHHHhcCCCcceEEEECCEEEehHHHHHHHhCHHHHHHHcCCCCCeEEeC-CCC--HHHHHHHHHH
Confidence 445555 444 6778999999999999999999999999999999999999954 5789997 898 9999999999
Q ss_pred HhcCccccccchHhhHHHHHhhcccccccccCcHHHHHHHHHHHhhhc
Q 042001 95 IYGSSTLIDPFNVTALRCAAEFLEMTEEYCSGNLCERFDLYLNQVVFQ 142 (670)
Q Consensus 95 cYg~~i~It~~NV~~L~cAAe~LqMte~~~~~nL~~~ce~FL~~~v~~ 142 (670)
+||+++.|+.+||..|+.||++|||. .|++.|++||.+.+..
T Consensus 80 iYtg~~~i~~~~v~~ll~~A~~l~i~------~L~~~C~~~l~~~l~~ 121 (135)
T 2yy9_A 80 FYTGHLALTSGNRDQVLLAAKELRVP------EAVELCQSFQPQTSVG 121 (135)
T ss_dssp HHHSCCCCCTTTHHHHHHHHHHTTCH------HHHHHHHHCCC-----
T ss_pred HhCCCCCCCHHHHHHHHHHHHHhCcH------HHHHHHHHHHHHhccC
Confidence 99999999999999999999999996 5999999999887643
No 8
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Probab=99.84 E-value=9.7e-21 Score=172.14 Aligned_cols=115 Identities=19% Similarity=0.326 Sum_probs=102.8
Q ss_pred CCCCCccchHHHHHHhHhhhhhcCCCeeEEEEECCeEEeeccchhcccchHHHhhhc-----CCCeEEe-CCCCCCCHHH
Q 042001 14 SPFSSPNISALLKIKIVSWSQETGLPVSIRVRVGNRTFNLHKFPLFSKSGYFKKRLN-----ESNEYEL-PQHFPGGPET 87 (670)
Q Consensus 14 ~~~ss~~~~~ll~~r~~~w~r~~g~~~DV~V~Vg~~~F~lHK~vLas~S~YFr~lfs-----~~~~I~L-~~d~PGGaea 87 (670)
..|..+.++..+.. ....++.++.+|||+|.|+|++|++||.+|+++|+||++||. ...+|+| + +++ +++
T Consensus 5 ~~~~~~~~~~~l~~-~l~~l~~~~~~~Dv~l~v~~~~~~aHk~iLaa~S~~F~~~f~~~~~e~~~~i~l~~-~~~--~~~ 80 (127)
T 1r29_A 5 SQIQFTRHASDVLL-NLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKRNLSVINLDP-EIN--PEG 80 (127)
T ss_dssp CCCCCTTHHHHHHH-HHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTSTTTTTCSEEECCT-TSC--HHH
T ss_pred ccccchhHHHHHHH-HHHHHHhcCCCCCEEEEECCEEEehHHHHHHHhCHHHHHHhcCCccCCCCEEEeCC-CCC--HHH
Confidence 55677777764433 566789999999999999999999999999999999999995 3578999 6 888 999
Q ss_pred HHHHHHHHhcCccccccchHhhHHHHHhhcccccccccCcHHHHHHHHHHH
Q 042001 88 FEMIVLFIYGSSTLIDPFNVTALRCAAEFLEMTEEYCSGNLCERFDLYLNQ 138 (670)
Q Consensus 88 FElv~~FcYg~~i~It~~NV~~L~cAAe~LqMte~~~~~nL~~~ce~FL~~ 138 (670)
|+.+++|+||+.+.+++.||..|+.||++|+|+ .|++.|+.||.+
T Consensus 81 f~~ll~~~Ytg~~~~~~~~~~~ll~~A~~~~i~------~L~~~c~~~l~~ 125 (127)
T 1r29_A 81 FNILLDFMYTSRLNLREGNIMAVMATAMYLQME------HVVDTCRKFIKA 125 (127)
T ss_dssp HHHHHHHHHHSCCCCCTTTHHHHHHHHHHTTCH------HHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCcCcCHHHHHHHHHHHHHhCCH------HHHHHHHHHHHh
Confidence 999999999999999999999999999999996 599999999975
No 9
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A
Probab=99.83 E-value=3.1e-21 Score=174.25 Aligned_cols=109 Identities=22% Similarity=0.292 Sum_probs=97.4
Q ss_pred CccchH-HHHHHhHhhhhhcCCCeeEEEEECCeEEeeccchhcccchHHHhhhc-CCCeEEeCCCCCCCHHHHHHHHHHH
Q 042001 18 SPNISA-LLKIKIVSWSQETGLPVSIRVRVGNRTFNLHKFPLFSKSGYFKKRLN-ESNEYELPQHFPGGPETFEMIVLFI 95 (670)
Q Consensus 18 s~~~~~-ll~~r~~~w~r~~g~~~DV~V~Vg~~~F~lHK~vLas~S~YFr~lfs-~~~~I~L~~d~PGGaeaFElv~~Fc 95 (670)
.|.|+. +++ ..+.++.++.+|||+|.|+|+.|++||.+|+++|+||++||+ ...+|.|+ +++ +++|+.+++|+
T Consensus 7 ~~~h~~~l~~--~l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~~f~~~~~~i~l~-~~~--~~~f~~ll~~~ 81 (119)
T 2q81_A 7 FPQHSQHVLE--QLNQQRQLGLLCDCTFVVDGVHFKAHKAVLAACSEYFKMLFVDQKDVVHLD-ISN--AAGLGQVLEFM 81 (119)
T ss_dssp HHHHHHHHHH--HHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHHCCSGGGGG-GCC--HHHHHHHHHHH
T ss_pred cchHHHHHHH--HHHHHHhcCCCcceEEEECCEEEehhHHHHHHcCHHHHHHHcCCCCEEEeC-CCC--HHHHHHHHHHH
Confidence 345554 444 567799999999999999999999999999999999999994 45678886 787 99999999999
Q ss_pred hcCccccccchHhhHHHHHhhcccccccccCcHHHHHHHHHH
Q 042001 96 YGSSTLIDPFNVTALRCAAEFLEMTEEYCSGNLCERFDLYLN 137 (670)
Q Consensus 96 Yg~~i~It~~NV~~L~cAAe~LqMte~~~~~nL~~~ce~FL~ 137 (670)
||+++.++++||..|+.||++|||+ .|++.|++||.
T Consensus 82 Ytg~~~i~~~~~~~ll~~A~~l~i~------~L~~~C~~~l~ 117 (119)
T 2q81_A 82 YTAKLSLSPENVDDVLAVATFLQMQ------DIITACHALKS 117 (119)
T ss_dssp HHSCCCCCTTTHHHHHHHHHHTTCH------HHHHHHHHHHT
T ss_pred cCCCCccCHHHHHHHHHHHHHhCCH------HHHHHHHHHHh
Confidence 9999999999999999999999996 59999999985
No 10
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A
Probab=99.83 E-value=1.5e-20 Score=168.98 Aligned_cols=110 Identities=25% Similarity=0.340 Sum_probs=97.0
Q ss_pred CccchHHHHHHhHhhhhhcCCCeeEEEEECCeEEeeccchhcccchHHHhhhc------CCCeEEeCCCCCCCHHHHHHH
Q 042001 18 SPNISALLKIKIVSWSQETGLPVSIRVRVGNRTFNLHKFPLFSKSGYFKKRLN------ESNEYELPQHFPGGPETFEMI 91 (670)
Q Consensus 18 s~~~~~ll~~r~~~w~r~~g~~~DV~V~Vg~~~F~lHK~vLas~S~YFr~lfs------~~~~I~L~~d~PGGaeaFElv 91 (670)
.|.|+..+.. ...-++.++.+|||+|.|+|++|++||.+|+++|+||++||+ ...+|+|+ +++ +++|+.+
T Consensus 5 ~~~h~~~l~~-~l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~~F~~~f~~~~~e~~~~~i~l~-~~~--~~~f~~l 80 (120)
T 2if5_A 5 FPDHSSDILS-GLNEQRTQGLLCDVVILVEGREFPTHRSVLAACSQYFKKLFTSGAVVDQQNVYEID-FVS--AEALTAL 80 (120)
T ss_dssp CTTHHHHHHH-HHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHC-----CCSEEECC-SSC--HHHHHHH
T ss_pred ccchHHHHHH-HHHHHHhcCCCCCeEEEECCEEEeHHHHHHHHhCHHHHHHhcCCccccCCceEEeC-CCC--HHHHHHH
Confidence 3455543332 466689999999999999999999999999999999999993 34678997 888 9999999
Q ss_pred HHHHhcCccccccchHhhHHHHHhhcccccccccCcHHHHHHHHHH
Q 042001 92 VLFIYGSSTLIDPFNVTALRCAAEFLEMTEEYCSGNLCERFDLYLN 137 (670)
Q Consensus 92 ~~FcYg~~i~It~~NV~~L~cAAe~LqMte~~~~~nL~~~ce~FL~ 137 (670)
++|+||+++.++++||..|+.||++|+|+ .|++.|++||+
T Consensus 81 l~~~Yt~~~~~~~~~~~~ll~~A~~~~i~------~L~~~C~~~L~ 120 (120)
T 2if5_A 81 MDFAYTATLTVSTANVGDILSAARLLEIP------AVSHVCADLLD 120 (120)
T ss_dssp HHHHHHSCCCCCGGGHHHHHHHHHHTTCH------HHHHHHHHHHC
T ss_pred HHHHcCCCCccCHHHHHHHHHHHHHhCCH------HHHHHHHHHhC
Confidence 99999999999999999999999999996 59999999984
No 11
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}
Probab=99.83 E-value=2.5e-20 Score=176.16 Aligned_cols=129 Identities=17% Similarity=0.157 Sum_probs=113.2
Q ss_pred hHhhhhhcCCCeeEEEEECCeEEeeccchhcccchHHHhhhc------CCCeEEeCCCCCCCHHHHHHHHHHHhcCcccc
Q 042001 29 IVSWSQETGLPVSIRVRVGNRTFNLHKFPLFSKSGYFKKRLN------ESNEYELPQHFPGGPETFEMIVLFIYGSSTLI 102 (670)
Q Consensus 29 ~~~w~r~~g~~~DV~V~Vg~~~F~lHK~vLas~S~YFr~lfs------~~~~I~L~~d~PGGaeaFElv~~FcYg~~i~I 102 (670)
....++.++.+|||+|.|+|+.|++||.+|+++|+||++||. ...+|.|+ +++ +++|+.+++|+|++.+.+
T Consensus 24 ~l~~l~~~~~~~Dv~l~v~~~~~~~Hk~iL~~~S~~F~~~f~~~~~e~~~~~i~l~-~~~--~~~f~~~l~~~Yt~~~~~ 100 (172)
T 3htm_A 24 ELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEIN-DVE--PEVFKEMMCFIYTGKAPN 100 (172)
T ss_dssp HHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHSCCCGGGTTEEEEC-SSC--HHHHHHHHHHHHHSCCTT
T ss_pred HHHHHHhCCCCcceEEEECCEEEEeeHHHHHHcCHHHHHHHccCccccCCCeEEec-CCC--HHHHHHHHHHHhCCCCCC
Confidence 566788999999999999999999999999999999999994 34789997 898 999999999999999999
Q ss_pred ccchHhhHHHHHhhcccccccccCcHHHHHHHHHHHhhhcchhhHHHHHhhccchhhhhHhhc---hHHHHHHHHH
Q 042001 103 DPFNVTALRCAAEFLEMTEEYCSGNLCERFDLYLNQVVFQSWDDTLIVLQRCQTLLPSTEELL---IVSRCIESLA 175 (670)
Q Consensus 103 t~~NV~~L~cAAe~LqMte~~~~~nL~~~ce~FL~~~v~~sw~dslavL~sC~~Ll~~Ae~l~---Iv~RCidsLA 175 (670)
++.|+..|+.+|++|+|+ .|.+.|+.||.+.+.. .+|..++.+|+.++ +...|++-|+
T Consensus 101 ~~~~~~~ll~~A~~~~~~------~l~~~c~~~l~~~l~~---------~n~~~~~~~A~~~~~~~L~~~~~~~i~ 161 (172)
T 3htm_A 101 LDKMADDLLAAADKYALE------RLKVMCEDALCSNLSV---------ENAAEILILADLHSADQLKTQAVDFIN 161 (172)
T ss_dssp GGGTHHHHHHHHHHTTCH------HHHHHHHHHHHHTCCT---------TTHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcH------HHHHHHHHHHHHhCCH---------HHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 999999999999999996 5999999999998865 57777888888875 4445555444
No 12
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A
Probab=99.82 E-value=3.1e-21 Score=174.96 Aligned_cols=114 Identities=21% Similarity=0.273 Sum_probs=100.4
Q ss_pred cCCCCCccchHHHHHHhHhhhhhcCCCeeEEEEECCeEEeeccchhcccchHHHhhhcC----CCeEEeCCC-CCCCHHH
Q 042001 13 SSPFSSPNISALLKIKIVSWSQETGLPVSIRVRVGNRTFNLHKFPLFSKSGYFKKRLNE----SNEYELPQH-FPGGPET 87 (670)
Q Consensus 13 ~~~~ss~~~~~ll~~r~~~w~r~~g~~~DV~V~Vg~~~F~lHK~vLas~S~YFr~lfs~----~~~I~L~~d-~PGGaea 87 (670)
...|+++.++..+.. ....++.++.+|||+|.|+|+.|++||.+|+++|+||++||.. ..+|.|+ + ++ +++
T Consensus 7 ~~~~~~~~~~~~l~~-~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~~e~~~i~l~-~~~~--~~~ 82 (125)
T 3ohu_A 7 MYVYESTVHCTNILL-GLNDQRKKDILCDVTLIVERKEFRAHRAVLAACSEYFWQALVGQTKNDLVVSLP-EEVT--ARG 82 (125)
T ss_dssp CEEEECSSHHHHHHH-HHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHTTCCCSSCEEECC-TTCC--HHH
T ss_pred ceeeecHHHHHHHHH-HHHHHHhcCCccceEEEECCEEEechHHHHHHcCHHHHHHhcCCCCCCcEEEeC-CCCC--HHH
Confidence 356677888773332 5677899999999999999999999999999999999999943 5678897 6 88 999
Q ss_pred HHHHHHHHhcCccccccchHhhHHHHHhhcccccccccCcHHHHHHHHH
Q 042001 88 FEMIVLFIYGSSTLIDPFNVTALRCAAEFLEMTEEYCSGNLCERFDLYL 136 (670)
Q Consensus 88 FElv~~FcYg~~i~It~~NV~~L~cAAe~LqMte~~~~~nL~~~ce~FL 136 (670)
|+.+++|+||+++.++++||..|+.||++|+|. .|++.|++||
T Consensus 83 f~~~l~~iYtg~~~~~~~~v~~ll~~A~~l~i~------~L~~~C~~~L 125 (125)
T 3ohu_A 83 FGPLLQFAYTAKLLLSRENIREVIRCAEFLRMH------NLEDSCFSFL 125 (125)
T ss_dssp HHHHHHHHTTSEEEECTTTHHHHHHHHHHHTBS------SCTTSSCCCC
T ss_pred HHHHHHhHcCCceEECHHHHHHHHHHHHHhCCH------HHHHHHHHhC
Confidence 999999999999999999999999999999996 5888888775
No 13
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens}
Probab=99.82 E-value=1.4e-20 Score=176.03 Aligned_cols=115 Identities=20% Similarity=0.219 Sum_probs=100.2
Q ss_pred cCCCCCccchHHHHHHhHhhhhhcCCCeeEEEEECCeEEeeccchhcccchHHHhhhc--------CCCeEEeCCCCCCC
Q 042001 13 SSPFSSPNISALLKIKIVSWSQETGLPVSIRVRVGNRTFNLHKFPLFSKSGYFKKRLN--------ESNEYELPQHFPGG 84 (670)
Q Consensus 13 ~~~~ss~~~~~ll~~r~~~w~r~~g~~~DV~V~Vg~~~F~lHK~vLas~S~YFr~lfs--------~~~~I~L~~d~PGG 84 (670)
.-.+.+|.++..+.. ....++.++.+|||+|.|+|+.|++||.+|+++|+||++||. ...+|.|+ +++
T Consensus 22 ~~~~~~~~h~~~l~~-~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~mf~~~~~e~e~~~~~I~l~-~v~-- 97 (144)
T 2ppi_A 22 SMAVSDPQHAARLLR-ALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELE-GIS-- 97 (144)
T ss_dssp CCCCCCTTHHHHHHH-HHHHTTC--CCCCEEEEETTEEEEECHHHHHHHCHHHHHHHHHCC-----CCCEEECC-SSC--
T ss_pred eeeecCcchHHHHHH-HHHHHHhcCCCcceEEEECCEEEehHHHHHHHcCHHHHHHHcCCCccccCCCcEEEeC-CCC--
Confidence 356788888774433 566789999999999999999999999999999999999992 35678997 898
Q ss_pred HHHHHHHHHHHhcCccccccchHhhHHHHHhhcccccccccCcHHHHHHHHHH
Q 042001 85 PETFEMIVLFIYGSSTLIDPFNVTALRCAAEFLEMTEEYCSGNLCERFDLYLN 137 (670)
Q Consensus 85 aeaFElv~~FcYg~~i~It~~NV~~L~cAAe~LqMte~~~~~nL~~~ce~FL~ 137 (670)
+++|+.+++|+|++++.++.+||..|+.||++|+|+ .|++.|++||.
T Consensus 98 ~~~f~~lL~fiYtg~~~i~~~~v~~ll~~A~~l~i~------~L~~~C~~~L~ 144 (144)
T 2ppi_A 98 VMVMREILDYIFSGQIRLNEDTIQDVVQAADLLLLT------DLKTLCCEFLE 144 (144)
T ss_dssp HHHHHHHHHHHTTSCCCCCTTTHHHHHHHHHHTTCH------HHHHHHHTTC-
T ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCcH------HHHHHHHHHhC
Confidence 999999999999999999999999999999999996 59999999974
No 14
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens}
Probab=99.82 E-value=4.4e-21 Score=174.44 Aligned_cols=113 Identities=22% Similarity=0.344 Sum_probs=98.6
Q ss_pred CCCCccchH-HHHHHhHhhhhhcCCCeeEEEEECCeEEeeccchhcccchHHHhhhcC----CCeEEeCCCCCCCHHHHH
Q 042001 15 PFSSPNISA-LLKIKIVSWSQETGLPVSIRVRVGNRTFNLHKFPLFSKSGYFKKRLNE----SNEYELPQHFPGGPETFE 89 (670)
Q Consensus 15 ~~ss~~~~~-ll~~r~~~w~r~~g~~~DV~V~Vg~~~F~lHK~vLas~S~YFr~lfs~----~~~I~L~~d~PGGaeaFE 89 (670)
.|.++.++. +++ ..+.++.+|.+|||+|.|+|++|++||.+|+++|+||++||.. ..+|.|+.+++ +++|+
T Consensus 6 ~~~~~~~~~~l~~--~l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~mf~~~~~e~~~i~l~~~v~--~~~f~ 81 (124)
T 2ihc_A 6 AYESSVHSTNVLL--SLNDQRKKDVLCDVTIFVEGQRFRAHRSVLAACSSYFHSRIVGQADGELNITLPEEVT--VKGFE 81 (124)
T ss_dssp EEECSSHHHHHHH--HHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHTTC---CEEEECCTTSC--HHHHH
T ss_pred eecCcchHHHHHH--HHHHHHhcCCCcCEEEEECCEEEecHHHHHHHcCHHHHHHHcCCCCCCceEeecCCcC--HHHHH
Confidence 345566665 444 5778999999999999999999999999999999999999953 35688854788 99999
Q ss_pred HHHHHHhcCccccccchHhhHHHHHhhcccccccccCcHHHHHHHHHH
Q 042001 90 MIVLFIYGSSTLIDPFNVTALRCAAEFLEMTEEYCSGNLCERFDLYLN 137 (670)
Q Consensus 90 lv~~FcYg~~i~It~~NV~~L~cAAe~LqMte~~~~~nL~~~ce~FL~ 137 (670)
.+++|+||+++.++++||..|+.||++|||+ .|++.|+.||.
T Consensus 82 ~lL~~iYtg~~~i~~~~v~~ll~~A~~~~~~------~L~~~C~~~l~ 123 (124)
T 2ihc_A 82 PLIQFAYTAKLILSKENVDEVCKCVEFLSVH------NIEESCFQFLK 123 (124)
T ss_dssp HHHHHHHHSEEEEETTTHHHHHHHHHHHTBS------SCCGGGGGTC-
T ss_pred HHHHHhcCCCcccCHHHHHHHHHHHHHHCCH------HHHHHHHHHHh
Confidence 9999999999999999999999999999996 59999999985
No 15
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}
Probab=99.82 E-value=8.2e-21 Score=173.54 Aligned_cols=114 Identities=25% Similarity=0.411 Sum_probs=93.0
Q ss_pred CCccchH-HHHHHhHhhhhhcCCCeeEEEEECCeEEeeccchhcccchHHHhhhc--CCCeEEeCCCCCCCHHHHHHHHH
Q 042001 17 SSPNISA-LLKIKIVSWSQETGLPVSIRVRVGNRTFNLHKFPLFSKSGYFKKRLN--ESNEYELPQHFPGGPETFEMIVL 93 (670)
Q Consensus 17 ss~~~~~-ll~~r~~~w~r~~g~~~DV~V~Vg~~~F~lHK~vLas~S~YFr~lfs--~~~~I~L~~d~PGGaeaFElv~~ 93 (670)
..|.++. +++ ..+.++.++.+|||+|.|+|+.|++||.+|+++|+||++||. ...+|+|+.+++ +++|+.+++
T Consensus 12 ~~~~~~~~l~~--~l~~l~~~~~~~Dv~l~v~~~~~~~Hk~vLaa~S~~F~~~f~~~~~~~i~l~~~~~--~~~f~~ll~ 87 (129)
T 3ga1_A 12 EIPNFGNSILE--CLNEQRLQGLYCDVSVVVKGHAFKAHRAVLAASSSYFRDLFNNSRSAVVELPAAVQ--PQSFQQILS 87 (129)
T ss_dssp ECTTHHHHHHH--HHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHHHCCCSEEECCTTCC--HHHHHHHHH
T ss_pred ecCcHHHHHHH--HHHHHHhcCCCcceEEEECCEEEEehHHHHHHcCHHHHHHHcCCCCCEEEECCCCC--HHHHHHHHH
Confidence 3445554 444 566789999999999999999999999999999999999994 567889953788 999999999
Q ss_pred HHhcCccccccchHhhHHHHHhhcccccccccCcHHHHHHHHHHHhh
Q 042001 94 FIYGSSTLIDPFNVTALRCAAEFLEMTEEYCSGNLCERFDLYLNQVV 140 (670)
Q Consensus 94 FcYg~~i~It~~NV~~L~cAAe~LqMte~~~~~nL~~~ce~FL~~~v 140 (670)
|+|++++.++.+||..|+.||++|||+ .|++.|++||.+..
T Consensus 88 ~iYtg~~~i~~~~~~~ll~~A~~~~i~------~l~~~C~~~L~~~~ 128 (129)
T 3ga1_A 88 FCYTGRLSMNVGDQDLLMYTAGFLQIQ------EIMEKGTEFFLKVS 128 (129)
T ss_dssp HHHHSEEECCTTTHHHHHHHHHHTTBT------TSSCC---------
T ss_pred HHhCCccccCHHHHHHHHHHHHHhCCH------HHHHHHHHHHHHhc
Confidence 999999999999999999999999996 59999999998753
No 16
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens}
Probab=99.82 E-value=7.3e-21 Score=175.08 Aligned_cols=120 Identities=18% Similarity=0.136 Sum_probs=91.5
Q ss_pred hHhhhhhcCCCeeEEEEECCeEEeeccchhcccchHHHhhhcC------CCeEEeCCCCCCCHHHHHHHHHHHhcCcccc
Q 042001 29 IVSWSQETGLPVSIRVRVGNRTFNLHKFPLFSKSGYFKKRLNE------SNEYELPQHFPGGPETFEMIVLFIYGSSTLI 102 (670)
Q Consensus 29 ~~~w~r~~g~~~DV~V~Vg~~~F~lHK~vLas~S~YFr~lfs~------~~~I~L~~d~PGGaeaFElv~~FcYg~~i~I 102 (670)
....++.++.+|||+|.|+|+.|++||.+|+++|+||++||.. ..+|.|+ +++ +++|+.+++|+||+.+.+
T Consensus 15 ~l~~l~~~~~~~Dv~l~v~~~~~~~Hk~iL~~~S~~F~~~f~~~~~e~~~~~i~l~-~~~--~~~~~~~l~~~Y~~~~~~ 91 (145)
T 4eoz_A 15 ELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEIN-DVE--PEVFKEMMCFIYTGKAPN 91 (145)
T ss_dssp HHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHSSSHHHHHTEEEEC-SSC--HHHHHHHHHHHHHSCCTT
T ss_pred HHHHHHhCCCCcceEEEECCEEEEeehHHHHHcCHHHHHHHcCCCcCCCCceEEec-CCC--HHHHHHHHHhhccCccCC
Confidence 5567888999999999999999999999999999999999943 3689997 898 999999999999999999
Q ss_pred ccchHhhHHHHHhhcccccccccCcHHHHHHHHHHHhhhcchhhHHHHHhhccchhhhhHhhch
Q 042001 103 DPFNVTALRCAAEFLEMTEEYCSGNLCERFDLYLNQVVFQSWDDTLIVLQRCQTLLPSTEELLI 166 (670)
Q Consensus 103 t~~NV~~L~cAAe~LqMte~~~~~nL~~~ce~FL~~~v~~sw~dslavL~sC~~Ll~~Ae~l~I 166 (670)
+..|+..|+.+|++|+|+ .|.+.|+.||.+.+.. .+|..++.+|+.+++
T Consensus 92 ~~~~~~~ll~~A~~~~~~------~l~~~c~~~l~~~l~~---------~n~~~~l~~A~~~~~ 140 (145)
T 4eoz_A 92 LDKMADDLLAAADKYALE------RLKVMCEDALCSNLSV---------ENAAEILILADLHSA 140 (145)
T ss_dssp GGGTHHHHHHHHHHTTCH------HHHHHHHCC-------------------------------
T ss_pred cHHHHHHHHHHHHHhCHH------HHHHHHHHHHHHhCCH---------HHHHHHHHHHHHhCH
Confidence 999999999999999996 5999999999998864 588888888888764
No 17
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0
Probab=99.81 E-value=2.8e-20 Score=169.24 Aligned_cols=94 Identities=21% Similarity=0.218 Sum_probs=85.8
Q ss_pred hhcCCCeeEEEEECCeEEeeccchhcccchHHHhhhcCCCeEEeCCCCCCCHHHHHHHHHHHhcCccccccchHhhHHHH
Q 042001 34 QETGLPVSIRVRVGNRTFNLHKFPLFSKSGYFKKRLNESNEYELPQHFPGGPETFEMIVLFIYGSSTLIDPFNVTALRCA 113 (670)
Q Consensus 34 r~~g~~~DV~V~Vg~~~F~lHK~vLas~S~YFr~lfs~~~~I~L~~d~PGGaeaFElv~~FcYg~~i~It~~NV~~L~cA 113 (670)
|.+|.+|||+|.|||+.|++||.+|+++|+||++ ...+|+|+ +++ +++|+.+++|+||+++.|+.+||..|+.|
T Consensus 25 r~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~---~~~~i~l~-~v~--~~~f~~ll~fiYtg~~~i~~~~v~~ll~a 98 (119)
T 3m5b_A 25 RLRPALCDTLITVGSQEFPAHSLVLAGVSQQLGR---RGQWALGE-GIS--PSTFAQLLNFVYGESVELQPGELRPLQEA 98 (119)
T ss_dssp HHTTTTCCEEEEETTEEEEECHHHHHTTCGGGCC---CEEEECCS-SCC--HHHHHHHHHHHTTCCEEECGGGHHHHHHH
T ss_pred HhcCCCcceEEEECCEEEeeEHHHHHHcCHHHhc---CCCEEEeC-CCC--HHHHHHHHHHHcCCCcCcCHHHHHHHHHH
Confidence 6679999999999999999999999999999986 45678897 898 99999999999999999999999999999
Q ss_pred HhhcccccccccCcHHHHHHHHHHHh
Q 042001 114 AEFLEMTEEYCSGNLCERFDLYLNQV 139 (670)
Q Consensus 114 Ae~LqMte~~~~~nL~~~ce~FL~~~ 139 (670)
|++|||. .|++.|++++.+.
T Consensus 99 A~~l~i~------~l~~~C~~~~~~~ 118 (119)
T 3m5b_A 99 ARALGVQ------SLEEACWRARGDR 118 (119)
T ss_dssp HHHTTCH------HHHHHHHHHC---
T ss_pred HHHhCCH------HHHHHHHHHHhhc
Confidence 9999996 5999999998763
No 18
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}
Probab=99.81 E-value=4.4e-20 Score=162.81 Aligned_cols=99 Identities=21% Similarity=0.298 Sum_probs=91.2
Q ss_pred hhhcCCCeeEEEEECC----eEEeeccchhcccchHHHhhhcC-----CCeEEeCCCCCCCHHHHHHHHHHHhcCccccc
Q 042001 33 SQETGLPVSIRVRVGN----RTFNLHKFPLFSKSGYFKKRLNE-----SNEYELPQHFPGGPETFEMIVLFIYGSSTLID 103 (670)
Q Consensus 33 ~r~~g~~~DV~V~Vg~----~~F~lHK~vLas~S~YFr~lfs~-----~~~I~L~~d~PGGaeaFElv~~FcYg~~i~It 103 (670)
++.++.+|||+|.|++ +.|++||.+|+++|+||++||.. ..+|.|+ +++ +++|+.+++|+||+.+.++
T Consensus 2 l~~~~~~~Dv~l~v~~~~~~~~~~~Hk~iLa~~S~~F~~~f~~~~~e~~~~i~l~-~~~--~~~f~~~l~~iYt~~~~~~ 78 (109)
T 2vkp_A 2 MFNNELMADVHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLAEVKSEIHIP-DVE--PAAFLILLKYMYSDEIDLE 78 (109)
T ss_dssp CTTCCTTCCEEEEESSTTSCEEEEECHHHHHHHCHHHHHHHC------CCEEEET-TSC--HHHHHHHHHHHHHCCCCCC
T ss_pred cccCCCcccEEEEECCCCCcEEEEeeHHHHHHcCHHHHHHhcCCcccCCCeEEeC-CCC--HHHHHHHHHHHcCCCccCC
Confidence 5678999999999998 99999999999999999999942 2789997 888 9999999999999999999
Q ss_pred cchHhhHHHHHhhcccccccccCcHHHHHHHHHHHhh
Q 042001 104 PFNVTALRCAAEFLEMTEEYCSGNLCERFDLYLNQVV 140 (670)
Q Consensus 104 ~~NV~~L~cAAe~LqMte~~~~~nL~~~ce~FL~~~v 140 (670)
++||..|+.+|++++|+ .|.+.|+.||.+.+
T Consensus 79 ~~~~~~ll~~A~~~~~~------~L~~~c~~~l~~~l 109 (109)
T 2vkp_A 79 ADTVLATLYAAKKYIVP------ALAKACVNFLETSL 109 (109)
T ss_dssp TTTHHHHHHHHHHTTCH------HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCcH------HHHHHHHHHHHhhC
Confidence 99999999999999996 59999999998764
No 19
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A
Probab=99.77 E-value=7e-19 Score=158.72 Aligned_cols=103 Identities=23% Similarity=0.275 Sum_probs=91.4
Q ss_pred CCCCCccchHHHHHHhHhhhhhcCCCeeEEEEECCeEEeeccchhcccchHHHhhhc-CCCeEEeCCCCCCCHHHHHHHH
Q 042001 14 SPFSSPNISALLKIKIVSWSQETGLPVSIRVRVGNRTFNLHKFPLFSKSGYFKKRLN-ESNEYELPQHFPGGPETFEMIV 92 (670)
Q Consensus 14 ~~~ss~~~~~ll~~r~~~w~r~~g~~~DV~V~Vg~~~F~lHK~vLas~S~YFr~lfs-~~~~I~L~~d~PGGaeaFElv~ 92 (670)
-.+.+|+++..+.. ....++.++.+|||+|.|||+.|++||.+|+++|+||++||. +..+|+|+ +++ +++|+.++
T Consensus 7 ~~~~~~~~~~~l~~-~l~~~~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~~F~~~f~~~~~~i~l~-~~~--~~~f~~~l 82 (116)
T 3fkc_A 7 ISATDIQYSGSLLN-SLNEQRGHGLFCDVTVIVEDRKFRAHKNILSASSTYFHQLFSVAGQVVELS-FIR--AEIFAEIL 82 (116)
T ss_dssp CCCCCTTHHHHHHH-HHHHHHHHTTTCCEEEEETTEEEEECHHHHHHHCHHHHHHTTSCCSEEEEC-SSC--HHHHHHHH
T ss_pred eeecCccHHHHHHH-HHHHHHhcCCceeEEEEECCEEEehhHHHHHHcCHHHHHHHcCCCCEEEeC-CCC--HHHHHHHH
Confidence 34567777763332 566789999999999999999999999999999999999995 46789997 898 99999999
Q ss_pred HHHhcCcc-ccccchHhhHHHHHhhcccc
Q 042001 93 LFIYGSST-LIDPFNVTALRCAAEFLEMT 120 (670)
Q Consensus 93 ~FcYg~~i-~It~~NV~~L~cAAe~LqMt 120 (670)
+|+||+++ .+++.||..|+.||++|||+
T Consensus 83 ~~~Ytg~~~~~~~~~~~~ll~~A~~l~i~ 111 (116)
T 3fkc_A 83 NYIYSSKIVRVRSDLLDELIKSGQLLGVK 111 (116)
T ss_dssp HHHTTSCCCSCCHHHHHHHHHHHHHHTCH
T ss_pred HhhcCCCcCCCCHHHHHHHHHHHHHhCcc
Confidence 99999999 79999999999999999996
No 20
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=99.74 E-value=6.1e-18 Score=175.21 Aligned_cols=130 Identities=17% Similarity=0.170 Sum_probs=114.6
Q ss_pred hHhhhhhcCCCeeEEEEECCeEEeeccchhcccchHHHhhhc------CCCeEEeCCCCCCCHHHHHHHHHHHhcCcccc
Q 042001 29 IVSWSQETGLPVSIRVRVGNRTFNLHKFPLFSKSGYFKKRLN------ESNEYELPQHFPGGPETFEMIVLFIYGSSTLI 102 (670)
Q Consensus 29 ~~~w~r~~g~~~DV~V~Vg~~~F~lHK~vLas~S~YFr~lfs------~~~~I~L~~d~PGGaeaFElv~~FcYg~~i~I 102 (670)
....++.++.+|||+|.|+|++|++||.+|+++|+||++||. ...+|+|+ +++ +++|+.+++|+||+.+.+
T Consensus 164 ~l~~l~~~~~~~Dv~l~v~~~~f~~Hk~vLaa~S~~F~~~f~~~~~e~~~~~i~l~-~~~--~~~f~~~L~~iYt~~~~~ 240 (312)
T 3hqi_A 164 ELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEIN-DVE--PEVFKEMMCFIYTGKAPN 240 (312)
T ss_dssp HHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHTTC-----CCSEEEEC-SSC--HHHHHHHHHHHHHSCCTT
T ss_pred HHHHHHhCCCCCceEEEECCEEEeHHHHHHHHcCHHHHHHhccCccccCCceEEec-CCC--HHHHHHHHHhhcCCCCCC
Confidence 455678899999999999999999999999999999999983 34789997 898 999999999999999999
Q ss_pred ccchHhhHHHHHhhcccccccccCcHHHHHHHHHHHhhhcchhhHHHHHhhccchhhhhHhh---chHHHHHHHHHH
Q 042001 103 DPFNVTALRCAAEFLEMTEEYCSGNLCERFDLYLNQVVFQSWDDTLIVLQRCQTLLPSTEEL---LIVSRCIESLAF 176 (670)
Q Consensus 103 t~~NV~~L~cAAe~LqMte~~~~~nL~~~ce~FL~~~v~~sw~dslavL~sC~~Ll~~Ae~l---~Iv~RCidsLA~ 176 (670)
+..||..|+.||++++|. .|+..|+.||.+.+.. .+|..++.+|+.+ .+...|++-|+.
T Consensus 241 ~~~~~~~ll~~A~~~~~~------~l~~~c~~~l~~~~~~---------~n~~~~l~~A~~~~~~~L~~~~~~~i~~ 302 (312)
T 3hqi_A 241 LDKMADDLLAAADKYALE------RLKVMCEDALCSNLSV---------ENAAEILILADLHSADQLKTQAVDFINY 302 (312)
T ss_dssp HHHHHHHHHHHHHHTTCH------HHHHHHHHHHHTTCCT---------TTHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCHH------HHHHHHHHHHHccCCH---------HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 999999999999999996 5999999999988765 5777788888887 466677776664
No 21
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=99.24 E-value=1.1e-11 Score=118.15 Aligned_cols=91 Identities=14% Similarity=0.191 Sum_probs=81.9
Q ss_pred EEEEE-CCeEEeeccchhcccchHHHhhhcC---C-----CeEEeCCCCCCCHHHHHHHHHHHhcCc-------------
Q 042001 42 IRVRV-GNRTFNLHKFPLFSKSGYFKKRLNE---S-----NEYELPQHFPGGPETFEMIVLFIYGSS------------- 99 (670)
Q Consensus 42 V~V~V-g~~~F~lHK~vLas~S~YFr~lfs~---~-----~~I~L~~d~PGGaeaFElv~~FcYg~~------------- 99 (670)
|+|.. +|+.|.+|+.+ |+.|+||+.||.+ . ..|.|| +|+ +.+++.+++|||..+
T Consensus 3 v~L~ssDg~~f~v~~~v-A~~S~~i~~m~~~~~~~~e~~~~~Ipl~-~V~--~~iL~kViey~~~h~~~~~~~~~~~~~~ 78 (159)
T 2ast_A 3 IKLQSSDGEIFEVDVEI-AKQSVTIKTMLEDLGMDDEGDDDPVPLP-NVN--AAILKKVIQWCTHHKDDPPPPEDDENKE 78 (159)
T ss_dssp EEEECTTSCEEEEEHHH-HHTCHHHHHHTTSSCSS------CEECT-TSC--HHHHHHHHHHHHHTTTCCC---------
T ss_pred EEEEcCCCCEEEeCHHH-HHHhHHHHHHHHhcCCcccccCCCcCCC-Ccc--HHHHHHHHHHHHHcCcCCCCcccccccc
Confidence 67765 89999999999 9999999999954 1 468998 899 999999999999998
Q ss_pred -------------cccccchHhhHHHHHhhcccccccccCcHHHHHHHHHHHhhhc
Q 042001 100 -------------TLIDPFNVTALRCAAEFLEMTEEYCSGNLCERFDLYLNQVVFQ 142 (670)
Q Consensus 100 -------------i~It~~NV~~L~cAAe~LqMte~~~~~nL~~~ce~FL~~~v~~ 142 (670)
+.|+..|+..|+.||.||+|. .|++.|+.|+..++..
T Consensus 79 ~~~~~i~~wD~~F~~id~~~l~eLl~AAnyL~I~------~Lld~~c~~va~~i~g 128 (159)
T 2ast_A 79 KRTDDIPVWDQEFLKVDQGTLFELILAANYLDIK------GLLDVTCKTVANMIKG 128 (159)
T ss_dssp --CCCCCHHHHHHTCSCHHHHHHHHHHHHHHTCH------HHHHHHHHHHHHHHSS
T ss_pred cchhhhhHHHHHHHcCCHHHHHHHHHHHHHHhHH------HHHHHHHHHHHHHHcC
Confidence 889999999999999999996 5999999999998864
No 22
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E*
Probab=99.06 E-value=3e-10 Score=99.89 Aligned_cols=74 Identities=20% Similarity=0.314 Sum_probs=64.2
Q ss_pred EEEEE-CCeEEeeccchhcccchHHHhhhcC--------CCeEEeCCCCCCCHHHHHHHHHHHh-----c---Cccc---
Q 042001 42 IRVRV-GNRTFNLHKFPLFSKSGYFKKRLNE--------SNEYELPQHFPGGPETFEMIVLFIY-----G---SSTL--- 101 (670)
Q Consensus 42 V~V~V-g~~~F~lHK~vLas~S~YFr~lfs~--------~~~I~L~~d~PGGaeaFElv~~FcY-----g---~~i~--- 101 (670)
|++.- +|++|.+||.+ |+.|+||+.||.+ ...|.|+ +++ +.+++.+++||| + +.+.
T Consensus 4 v~L~SsDg~~F~v~r~v-A~~S~~ik~m~~~~~~~~E~~~~~I~l~-~V~--~~iL~kViey~~~h~~~~~~~~~i~~~~ 79 (97)
T 4ajy_C 4 VKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAENETNEVNFR-EIP--SHVLSKVCMYFTYKVRYTNSSTEIPEFP 79 (97)
T ss_dssp EEEECTTCCEEEEEHHH-HTTSHHHHHHHCCC--------CEEECT-TSC--HHHHHHHHHHHHHHHHHTTCCSCCCCCC
T ss_pred EEEEecCCcEEEecHHH-HHHhHHHHHHHHhCCCccccCCCceECC-CCC--HHHHHHHHHHHHHhcccCCCcCCCCcCc
Confidence 45554 78999999999 9999999999953 4578898 898 999999999999 5 6677
Q ss_pred cccchHhhHHHHHhhccc
Q 042001 102 IDPFNVTALRCAAEFLEM 119 (670)
Q Consensus 102 It~~NV~~L~cAAe~LqM 119 (670)
|+++|+..|+.||.||+.
T Consensus 80 i~~~~l~eLl~AAnyL~~ 97 (97)
T 4ajy_C 80 IAPEIALELLMAANFLDC 97 (97)
T ss_dssp CCGGGHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHhhhCC
Confidence 999999999999999983
No 23
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=98.98 E-value=7.1e-10 Score=103.98 Aligned_cols=91 Identities=14% Similarity=0.184 Sum_probs=81.9
Q ss_pred EEEEE-CCeEEeeccchhcccchHHHhhhcC--CCeEEeCCCCCCCHHHHHHHHHHHhcCc-------------------
Q 042001 42 IRVRV-GNRTFNLHKFPLFSKSGYFKKRLNE--SNEYELPQHFPGGPETFEMIVLFIYGSS------------------- 99 (670)
Q Consensus 42 V~V~V-g~~~F~lHK~vLas~S~YFr~lfs~--~~~I~L~~d~PGGaeaFElv~~FcYg~~------------------- 99 (670)
|+|.. +|+.|.+|+.+ |..|+||+.|+.+ ...|.|| +|+ +.+++.+++|||...
T Consensus 4 v~L~SsDg~~f~v~~~v-A~~S~~ik~ml~~~~~~~Ipl~-~V~--~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~~i 79 (141)
T 1fs1_B 4 IKLQSSDGEIFEVDVEI-AKQSVTIKTMLEDLGMDPVPLP-NVN--AAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDI 79 (141)
T ss_dssp EEEECTTSCEEEEEGGG-GGTCHHHHHHHHHTCCSSEECT-TCC--HHHHHHHHHHHHHHTTCC----------------
T ss_pred EEEEeCCCCEEEecHHH-HHHhHHHHHHHHhcCCCceecC-CcC--HHHHHHHHHHHHHhccCCCccccccccccchhhh
Confidence 67776 88999999998 8999999999953 5689998 899 999999999999876
Q ss_pred -------cccccchHhhHHHHHhhcccccccccCcHHHHHHHHHHHhhhc
Q 042001 100 -------TLIDPFNVTALRCAAEFLEMTEEYCSGNLCERFDLYLNQVVFQ 142 (670)
Q Consensus 100 -------i~It~~NV~~L~cAAe~LqMte~~~~~nL~~~ce~FL~~~v~~ 142 (670)
+.++..++..|+.||.||+|. .|++.|+.|+...+-.
T Consensus 80 ~~wD~~F~~vd~~~l~eLi~AAnyL~I~------~Lldl~c~~vA~~ikg 123 (141)
T 1fs1_B 80 PVWDQEFLKVDQGTLFELILAANYLDIK------GLLDVTCKTVANMIKG 123 (141)
T ss_dssp -HHHHHHTCSCHHHHHHHHHHHHHHTCH------HHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHhCCHHHHHHHHHHHHHHhhh------HHHHHHHHHHHHHHcC
Confidence 788999999999999999996 6999999999998854
No 24
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=98.78 E-value=1.2e-09 Score=104.44 Aligned_cols=91 Identities=15% Similarity=0.199 Sum_probs=52.1
Q ss_pred EEEEE-CCeEEeeccchhcccchHHHhhhc---CCCeEEeCCCCCCCHHHHHHHHHHHhcCc------------------
Q 042001 42 IRVRV-GNRTFNLHKFPLFSKSGYFKKRLN---ESNEYELPQHFPGGPETFEMIVLFIYGSS------------------ 99 (670)
Q Consensus 42 V~V~V-g~~~F~lHK~vLas~S~YFr~lfs---~~~~I~L~~d~PGGaeaFElv~~FcYg~~------------------ 99 (670)
|+|.. +|+.|.+|+.+ |..|+||+.|+. ....|.|| +|+ +.+++.|++|||...
T Consensus 6 v~L~SsDg~~f~v~~~v-A~~S~~ik~ml~~~~~~~~Ipl~-~V~--~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~~ 81 (160)
T 2p1m_A 6 IVLKSSDGESFEVEEAV-ALESQTIAHMVEDDCVDNGVPLP-NVT--SKILAKVIEYCKRHVEAAASKAEAVEGAATSDD 81 (160)
T ss_dssp --CCC---------CHH-HHTCTTTC------------CCT-TSC--HHHHHHHHHC-----------------------
T ss_pred EEEEcCCCCEEEECHHH-HHHhHHHHHHHHccCCCCceeCC-cCc--HHHHHHHHHHHHHcccCCCcccccccccccccc
Confidence 66664 89999999998 899999999994 33578887 898 999999999999986
Q ss_pred ---------cccccchHhhHHHHHhhcccccccccCcHHHHHHHHHHHhhhc
Q 042001 100 ---------TLIDPFNVTALRCAAEFLEMTEEYCSGNLCERFDLYLNQVVFQ 142 (670)
Q Consensus 100 ---------i~It~~NV~~L~cAAe~LqMte~~~~~nL~~~ce~FL~~~v~~ 142 (670)
+.++..++..|+.||.||+|. .|++.|+.|+..++-.
T Consensus 82 ~i~~wD~~Fl~vd~~~l~eLi~AAnyL~I~------~Lldl~c~~vA~~ikg 127 (160)
T 2p1m_A 82 DLKAWDADFMKIDQATLFELILAANYLNIK------NLLDLTCQTVADMIKG 127 (160)
T ss_dssp -------------------CHHHHHHTTCH------HHHHHHHHHHHHTTTT
T ss_pred hhhHHHHHHHcCCHHHHHHHHHHHHHHhHH------HHHHHHHHHHHHHHcC
Confidence 578999999999999999996 5999999999998843
No 25
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B
Probab=98.05 E-value=5.5e-06 Score=72.80 Aligned_cols=74 Identities=20% Similarity=0.282 Sum_probs=63.2
Q ss_pred EEEEE-CCeEEeeccchhcccchHHHhhhcC--------CCeEEeCCCCCCCHHHHHHHHHHHhcCc-----------cc
Q 042001 42 IRVRV-GNRTFNLHKFPLFSKSGYFKKRLNE--------SNEYELPQHFPGGPETFEMIVLFIYGSS-----------TL 101 (670)
Q Consensus 42 V~V~V-g~~~F~lHK~vLas~S~YFr~lfs~--------~~~I~L~~d~PGGaeaFElv~~FcYg~~-----------i~ 101 (670)
|++.- +|+.|.+|+.+ |..|++|+.|+.+ ...|.|| +++ +.+++.+++|||... ..
T Consensus 3 v~L~SsDg~~f~V~~~~-A~~S~~ik~ml~~~~~~~e~~~~~Ipl~-~V~--~~iL~kVieyc~~h~~~~~~~~~i~~w~ 78 (96)
T 2fnj_C 3 VKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAENETNEVNFR-EIP--SHVLSKVCMYFTYKVRYTNSSTEIPEFP 78 (96)
T ss_dssp EEEECTTSCEEEEEHHH-HTTSHHHHHHHHCC--------CEEECS-SCC--HHHHHHHHHHHHHHHHHHSCCSCCCCCC
T ss_pred EEEEecCCCEEEeCHHH-HHHhHHHHHHHHccCCcccccCCceeCC-CCC--HHHHHHHHHHHHHccccCCCcccCCCcc
Confidence 56665 88999999997 8999999999842 1478998 898 999999999998653 36
Q ss_pred cccchHhhHHHHHhhccc
Q 042001 102 IDPFNVTALRCAAEFLEM 119 (670)
Q Consensus 102 It~~NV~~L~cAAe~LqM 119 (670)
+.+..+..|+.||.||++
T Consensus 79 vd~~~l~eLi~AAnyLdI 96 (96)
T 2fnj_C 79 IAPEIALELLMAANFLDC 96 (96)
T ss_dssp CCTTTHHHHHHHHHHHTC
T ss_pred cCHHHHHHHHHHHHHhCc
Confidence 888999999999999985
No 26
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=98.03 E-value=1.3e-05 Score=77.42 Aligned_cols=91 Identities=13% Similarity=0.157 Sum_probs=76.5
Q ss_pred eEEEEE-CCeEEeeccchhcccchHHHhhhcC--------C--CeEEeCCCCCCCHHHHHHHHHHHhcCc----------
Q 042001 41 SIRVRV-GNRTFNLHKFPLFSKSGYFKKRLNE--------S--NEYELPQHFPGGPETFEMIVLFIYGSS---------- 99 (670)
Q Consensus 41 DV~V~V-g~~~F~lHK~vLas~S~YFr~lfs~--------~--~~I~L~~d~PGGaeaFElv~~FcYg~~---------- 99 (670)
-|+|.- +|+.|.+++.+ |..|++++.|+.+ . ..|.|| +|+ +.+++.|+.|||-.+
T Consensus 8 ~i~L~SsDG~~F~V~~~v-A~~S~tIk~ml~~~~~~~~~~~~~~~Iplp-nV~--s~iL~kVieyc~~h~~~~~~~~~~~ 83 (169)
T 3v7d_A 8 NVVLVSGEGERFTVDKKI-AERSLLLKNYLNDMGDDDDEDDDEIVMPVP-NVR--SSVLQKVIEWAEHHRDSNFPDEDDD 83 (169)
T ss_dssp EEEEECTTCCEEEEEHHH-HTTSHHHHHHHHC-----------CEEECT-TCC--HHHHHHHHHHHHHTTTCCCCC----
T ss_pred eEEEEeCCCCEEEecHHH-HHHhHHHHHHHHhcCcccccccCCCceeeC-CCC--HHHHHHHHHHHHHcccCCCcccccc
Confidence 466654 78999999997 8899999999831 2 568898 899 999999999998754
Q ss_pred ---------------cccccchHhhHHHHHhhcccccccccCcHHHHHHHHHHHhhh
Q 042001 100 ---------------TLIDPFNVTALRCAAEFLEMTEEYCSGNLCERFDLYLNQVVF 141 (670)
Q Consensus 100 ---------------i~It~~NV~~L~cAAe~LqMte~~~~~nL~~~ce~FL~~~v~ 141 (670)
+.+....+..|+.||.||+|. .|++.|+.++...+-
T Consensus 84 ~~~~~~~i~~wD~~Fl~vd~~~LfeLi~AAnyLdIk------~Lldl~c~~vA~~ik 134 (169)
T 3v7d_A 84 DSRKSAPVDSWDREFLKVDQEMLYEIILAANYLNIK------PLLDAGCKVVAEMIR 134 (169)
T ss_dssp ----CCCCCHHHHHHTCSCHHHHHHHHHHHHHTTCH------HHHHHHHHHHHHHHT
T ss_pred cccccccccHHHHHHHcCCHHHHHHHHHHHHHhCcH------HHHHHHHHHHHHHHc
Confidence 356778899999999999996 599999999988764
No 27
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1
Probab=98.03 E-value=7e-06 Score=72.61 Aligned_cols=75 Identities=16% Similarity=0.185 Sum_probs=64.2
Q ss_pred eEEEEE-CCeEEeeccchhcccchHHHhhhcC-----CCeEEeCCCCCCCHHHHHHHHHHHhcCc--------------c
Q 042001 41 SIRVRV-GNRTFNLHKFPLFSKSGYFKKRLNE-----SNEYELPQHFPGGPETFEMIVLFIYGSS--------------T 100 (670)
Q Consensus 41 DV~V~V-g~~~F~lHK~vLas~S~YFr~lfs~-----~~~I~L~~d~PGGaeaFElv~~FcYg~~--------------i 100 (670)
-|++.- +|+.|.+|+.+ |..|++++.|+.+ ...|.|| +++ +.+++.+++|||... .
T Consensus 5 ~v~L~SsDg~~f~V~~~v-A~~S~~ik~ml~~~~e~~~~~Iplp-~V~--~~iL~kVieyc~~h~~~~~~~~~~~~i~~w 80 (99)
T 1hv2_A 5 FVTLVSKDDKEYEISRSA-AMISPTLKAMIEGPFRESKGRIELK-QFD--SHILEKAVEYLNYNLKYSGVSEDDDEIPEF 80 (99)
T ss_dssp EEEEEETTTEEEEEEHHH-HTTCHHHHHHHHSSTTTCTTEEEET-TSC--HHHHHHHHHHHHHHHHHHHHCSSCSSCCCC
T ss_pred EEEEEecCCCEEEECHHH-HHHhHHHHHHHhcccccCCCceecC-CcC--HHHHHHHHHHHHHhcccCCCccccccCCCc
Confidence 366766 89999999997 8999999999842 2579998 899 999999999999654 3
Q ss_pred ccccchHhhHHHHHhhccc
Q 042001 101 LIDPFNVTALRCAAEFLEM 119 (670)
Q Consensus 101 ~It~~NV~~L~cAAe~LqM 119 (670)
.+.+.++..|+.||.||++
T Consensus 81 ~vd~~~lfeLi~AAnyLdI 99 (99)
T 1hv2_A 81 EIPTEMSLELLLAADYLSI 99 (99)
T ss_dssp CCCHHHHHHHHHHHHHHCC
T ss_pred cCCHHHHHHHHHHHHHhCc
Confidence 5788899999999999985
No 28
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}
Probab=97.49 E-value=0.00048 Score=61.41 Aligned_cols=89 Identities=16% Similarity=0.242 Sum_probs=70.5
Q ss_pred eeEEEEECCeEEeeccchhcccc-hHHHhhhcC----------CCeEEeCCCCCCCHHHHHHHHHHHhcCccccccc-hH
Q 042001 40 VSIRVRVGNRTFNLHKFPLFSKS-GYFKKRLNE----------SNEYELPQHFPGGPETFEMIVLFIYGSSTLIDPF-NV 107 (670)
Q Consensus 40 ~DV~V~Vg~~~F~lHK~vLas~S-~YFr~lfs~----------~~~I~L~~d~PGGaeaFElv~~FcYg~~i~It~~-NV 107 (670)
-=|+|.|||+.|...+..|.... .+|.+||+. ..++-| |-. |+.|+.+++|..++++.+.++ .+
T Consensus 6 ~~v~LNVGG~~f~t~~~TL~~~p~s~L~~~~~~~~~~~~~~d~~~~~fi--DRd--p~~F~~IL~~lr~g~l~~p~~~~~ 81 (107)
T 3drz_A 6 KWVRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLI--DRD--PTYFGPVLNYLRHGKLVINKDLAE 81 (107)
T ss_dssp CEEEEEETTEEEEEEHHHHTSSTTSHHHHHHTTCGGGGGGBCTTSCEEE--CSC--HHHHHHHHHHHHHSCCCCCTTSCH
T ss_pred CEEEEEECCEEEEECHHHHhcCCCcchhHHHhcCCCCCcCCCCCceEEe--cCC--hHHHHHHHHHhCCCeeCCCCCCCH
Confidence 34788999999999999999886 467888742 234555 455 999999999999999877443 45
Q ss_pred hhHHHHHhhcccccccccCcHHHHHHHHHHH
Q 042001 108 TALRCAAEFLEMTEEYCSGNLCERFDLYLNQ 138 (670)
Q Consensus 108 ~~L~cAAe~LqMte~~~~~nL~~~ce~FL~~ 138 (670)
..++..|+|.++++ |++.|++-+.+
T Consensus 82 ~~l~~Ea~fy~l~~------L~~~l~~~i~~ 106 (107)
T 3drz_A 82 EGVLEEAEFYNITS------LIKLVKDKIRE 106 (107)
T ss_dssp HHHHHHHHHHTCHH------HHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHH------HHHHHHHHHhc
Confidence 78999999999974 99988876543
No 29
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1
Probab=97.45 E-value=0.00014 Score=65.77 Aligned_cols=75 Identities=20% Similarity=0.266 Sum_probs=62.5
Q ss_pred eEEEE-ECCeEEeeccchhcccchHHHhhhcC--------CCeEEeCCCCCCCHHHHHHHHHHHhcCc-----------c
Q 042001 41 SIRVR-VGNRTFNLHKFPLFSKSGYFKKRLNE--------SNEYELPQHFPGGPETFEMIVLFIYGSS-----------T 100 (670)
Q Consensus 41 DV~V~-Vg~~~F~lHK~vLas~S~YFr~lfs~--------~~~I~L~~d~PGGaeaFElv~~FcYg~~-----------i 100 (670)
-|+|. -+|+.|.+++. .|..|+.++.|+.+ ...|.|| +|+ +.+++.+++|||-.. .
T Consensus 18 ~v~L~SsDG~~F~V~~~-~A~~S~tIk~ml~~~~~~~e~~~~~Iplp-nV~--s~iL~kVieyc~~h~~~~~~~~~i~~w 93 (112)
T 1vcb_B 18 YVKLISSDGHEFIVKRE-HALTSGTIKAMLSGPGQFAENETNEVNFR-EIP--SHVLSKVCMYFTYKVRYTNSSTEIPEF 93 (112)
T ss_dssp EEEEECTTSCEEEEEHH-HHHTSHHHHHHSSCC--------CEEECS-SCC--HHHHHHHHHHHHHHHHHSSCSSCCCCC
T ss_pred EEEEEcCCCCEEEECHH-HHHHhHHHHHHHHhcCCcccccCCceeCC-CCC--HHHHHHHHHHHHHhhhccCCcCCCCCc
Confidence 35565 48899999999 57899999999842 1478898 898 999999999998543 3
Q ss_pred ccccchHhhHHHHHhhccc
Q 042001 101 LIDPFNVTALRCAAEFLEM 119 (670)
Q Consensus 101 ~It~~NV~~L~cAAe~LqM 119 (670)
.+...++..|+.||.||++
T Consensus 94 ~vd~~~lfeLi~AAnyLdI 112 (112)
T 1vcb_B 94 PIAPEIALELLMAANFLDC 112 (112)
T ss_dssp CCCHHHHHHHHHHHHHHTC
T ss_pred ccCHHHHHHHHHHHHHhCc
Confidence 6888899999999999986
No 30
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A
Probab=95.57 E-value=0.036 Score=55.07 Aligned_cols=89 Identities=16% Similarity=0.234 Sum_probs=69.5
Q ss_pred eEEEEECCeEEeeccchhcccch-HHHhhhcCC----------CeEEeCCCCCCCHHHHHHHHHHHhcCccccccc-hHh
Q 042001 41 SIRVRVGNRTFNLHKFPLFSKSG-YFKKRLNES----------NEYELPQHFPGGPETFEMIVLFIYGSSTLIDPF-NVT 108 (670)
Q Consensus 41 DV~V~Vg~~~F~lHK~vLas~S~-YFr~lfs~~----------~~I~L~~d~PGGaeaFElv~~FcYg~~i~It~~-NV~ 108 (670)
=|+|.|||+.|...+..|...-+ +|.+||+.. .++-| |-. |..|+.|++|.-++++.+.++ .+.
T Consensus 13 ~V~LNVGG~~F~Tt~sTL~r~PdS~L~~lfs~~~~~~~~~De~geyFI--DRD--P~~F~~ILnyLRtG~L~lP~~~~~~ 88 (202)
T 3drx_A 13 WVRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLI--DRD--PTYFGPVLNYLRHGKLVINKDLAEE 88 (202)
T ss_dssp EEEEEETTEEEEEETTGGGSCTTSSTHHHHSCCCC----BCTTCCEEE--CSC--STTHHHHHHHHHHSCCCCCTTSCHH
T ss_pred EEEEEECCEEEEEeHHHHhCCCcchHHHHhcCccccCcccCCCccEEe--cCC--hHHHHHHHHHhcCCccCCCCCCCHH
Confidence 36779999999999999987753 778887432 23444 344 889999999999999887443 456
Q ss_pred hHHHHHhhcccccccccCcHHHHHHHHHHHh
Q 042001 109 ALRCAAEFLEMTEEYCSGNLCERFDLYLNQV 139 (670)
Q Consensus 109 ~L~cAAe~LqMte~~~~~nL~~~ce~FL~~~ 139 (670)
.++.-|+|+++. .|++.|+.-+.+.
T Consensus 89 ~l~eEA~FygL~------~Lv~~l~~~i~er 113 (202)
T 3drx_A 89 GVLEEAEFYNIT------SLIKLVKDKIRER 113 (202)
T ss_dssp HHHHHHHHTTCH------HHHHHHHHHHHHH
T ss_pred HHHHHHHHCCcH------HHHHHHHHHHHHH
Confidence 799999999996 4999888877654
No 31
>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2
Probab=94.64 E-value=0.027 Score=51.04 Aligned_cols=76 Identities=16% Similarity=0.138 Sum_probs=60.3
Q ss_pred EEEEECCeEEeeccchhcccch-HHHhhhc-------CCCeEEeCCCCCCCHHHHHHHHHHHhcCccccccc-hHhhHHH
Q 042001 42 IRVRVGNRTFNLHKFPLFSKSG-YFKKRLN-------ESNEYELPQHFPGGPETFEMIVLFIYGSSTLIDPF-NVTALRC 112 (670)
Q Consensus 42 V~V~Vg~~~F~lHK~vLas~S~-YFr~lfs-------~~~~I~L~~d~PGGaeaFElv~~FcYg~~i~It~~-NV~~L~c 112 (670)
|+|.|||+.|...+..|...-+ +|.+|++ +..++-| |=. |..|+.|++|.-+|++.+.++ .+..++.
T Consensus 7 V~LNVGG~~f~T~~~TL~~~P~s~L~~l~~~~~~~~~~~g~~Fi--DRd--p~~F~~ILnylR~G~l~~p~~~~~~~~~~ 82 (115)
T 3kvt_A 7 VIINVGGIRHETYKATLKKIPATRLSRLTEGMLNYDPVLNEYFF--DRH--PGVFAQIINYYRSGKLHYPTDVCGPLFEE 82 (115)
T ss_dssp EEEEETTEEEEEEHHHHTTSCSSTTTTCCTTSTTEETTTTEEEE--CSC--TTTHHHHHHHHHHSCBCCCSSSCHHHHHH
T ss_pred EEEEECCEEEEecHHHHhcCCCccHHHHhcCCCCCCCCCCcEEE--ecC--hHHHHHHHHHhcCCCCCCCCcccHHHHHH
Confidence 7889999999999999987644 3555653 2345555 344 889999999999999877553 6788999
Q ss_pred HHhhccccc
Q 042001 113 AAEFLEMTE 121 (670)
Q Consensus 113 AAe~LqMte 121 (670)
-|+|.++++
T Consensus 83 Ea~fy~i~~ 91 (115)
T 3kvt_A 83 ELEFWGLDS 91 (115)
T ss_dssp HHHHHTCCG
T ss_pred HHHHhCCCh
Confidence 999999986
No 32
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2
Probab=93.37 E-value=0.14 Score=46.99 Aligned_cols=78 Identities=17% Similarity=0.231 Sum_probs=57.7
Q ss_pred eeEEEEECCeEEeeccchhcccchHH-Hh----hh--cCCCeEEeCCCCCCCHHHHHHHHHHHhcCccccccc-hHhhHH
Q 042001 40 VSIRVRVGNRTFNLHKFPLFSKSGYF-KK----RL--NESNEYELPQHFPGGPETFEMIVLFIYGSSTLIDPF-NVTALR 111 (670)
Q Consensus 40 ~DV~V~Vg~~~F~lHK~vLas~S~YF-r~----lf--s~~~~I~L~~d~PGGaeaFElv~~FcYg~~i~It~~-NV~~L~ 111 (670)
.=|+|.|||+.|..-+..|...-+-+ .+ .+ .+..++-| |=. |+.|+.|++|.-+|++.+.++ .+..|+
T Consensus 13 ~~V~LNVGG~~F~t~~~TL~~~p~S~L~~~~~~~~~~~~~g~~Fi--DRd--p~~F~~ILnflR~G~l~~p~~~~~~~l~ 88 (124)
T 1s1g_A 13 ELIVLNVSGRRFQTWRTTLERYPDTLLGSTEKEFFFNEDTKEYFF--DRD--PEVFRCVLNFYRTGKLHYPRYECISAYD 88 (124)
T ss_dssp CEEEEEETTEEEEEEHHHHTTSTTSSTTSSGGGGTBCSSSCSEEE--CSC--HHHHHHHHHHHHHSCBCCCTTSCHHHHH
T ss_pred CEEEEEeCCEEEEEeHHHHhcCCCceecccCCcccccCCCCcEEE--cCC--hHHHHHHHHHHhcCCCCCCCCcCHHHHH
Confidence 34788999999999998886543211 11 11 23345655 445 999999999999999876543 578899
Q ss_pred HHHhhccccc
Q 042001 112 CAAEFLEMTE 121 (670)
Q Consensus 112 cAAe~LqMte 121 (670)
.-|+|+++.+
T Consensus 89 ~Ea~fy~i~~ 98 (124)
T 1s1g_A 89 DELAFYGILP 98 (124)
T ss_dssp HHHHHTTCCG
T ss_pred HHHHHcCCCh
Confidence 9999999975
No 33
>1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A
Probab=93.01 E-value=0.23 Score=43.81 Aligned_cols=76 Identities=16% Similarity=0.163 Sum_probs=57.1
Q ss_pred EEEEECCeEEeeccchhcccch-HHHhhh-------cCCCeEEeCCCCCCCHHHHHHHHHHHhc-Cccccccc-hHhhHH
Q 042001 42 IRVRVGNRTFNLHKFPLFSKSG-YFKKRL-------NESNEYELPQHFPGGPETFEMIVLFIYG-SSTLIDPF-NVTALR 111 (670)
Q Consensus 42 V~V~Vg~~~F~lHK~vLas~S~-YFr~lf-------s~~~~I~L~~d~PGGaeaFElv~~FcYg-~~i~It~~-NV~~L~ 111 (670)
|+|.|||+.|...+..|...-+ .+.+|+ .+..++-| |=. |+.|+.|++|.-+ |++.+.++ .+..++
T Consensus 3 v~LNVGG~~f~t~~~TL~~~p~s~L~~~~~~~~~~~~~~~eyFi--DRd--p~~F~~ILnflR~~G~l~~p~~~~~~~~~ 78 (100)
T 1t1d_A 3 VVINVSGLRFETQLKTLNQFPDTLLGNPQKRNRYYDPLRNEYFF--DRN--RPSFDAILYFYQSGGRLRRPVNVPLDVFS 78 (100)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTCHHHHGGGEETTTTEEEE--CSC--STTHHHHHHHHHTTSCCCCCTTSCHHHHH
T ss_pred EEEEECCEEEEeeHHHHhcCCCccccchhccccccCCCceeEEE--cCC--hHHHHHHHHHHhcCCcccCCCCCCHHHHH
Confidence 7889999999999999865432 233344 23456666 334 8899999999998 88865432 577899
Q ss_pred HHHhhccccc
Q 042001 112 CAAEFLEMTE 121 (670)
Q Consensus 112 cAAe~LqMte 121 (670)
.-|+|.++.+
T Consensus 79 ~Ea~fy~i~~ 88 (100)
T 1t1d_A 79 EEIKFYELGE 88 (100)
T ss_dssp HHHHHTTCCH
T ss_pred HHHHHcCCCH
Confidence 9999999975
No 34
>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2
Probab=92.68 E-value=0.1 Score=46.39 Aligned_cols=83 Identities=14% Similarity=0.185 Sum_probs=60.6
Q ss_pred EEEEECCeEEeeccchhcccch-HHHhh----h--cCCCeEEeCCCCCCCHHHHHHHHHHHhcCccccccc-hHhhHHHH
Q 042001 42 IRVRVGNRTFNLHKFPLFSKSG-YFKKR----L--NESNEYELPQHFPGGPETFEMIVLFIYGSSTLIDPF-NVTALRCA 113 (670)
Q Consensus 42 V~V~Vg~~~F~lHK~vLas~S~-YFr~l----f--s~~~~I~L~~d~PGGaeaFElv~~FcYg~~i~It~~-NV~~L~cA 113 (670)
|+|.|||+.|...+..|...-+ .|.+. + .+..++-| |=. |+.|+.+++|.-+|++.+.++ ++..++.-
T Consensus 2 V~LNVGG~~f~t~~~TL~~~p~s~L~~~~~~~~~~~~~~~~Fi--DRd--p~~F~~ILnflR~g~l~~p~~~~~~~l~~E 77 (105)
T 1nn7_A 2 IVLNVSGTRFQTWQDTLERYPDTLLGSSERDFFYHPETQQYFF--DRD--PDIFRHILNFYRTGKLHYPRHECISAYDEE 77 (105)
T ss_dssp EEEEETTEEEEECHHHHHTSCSSSTTSGGGGGGEEGGGTEEEE--CSC--TTTHHHHHHHHHHSCBCCCTTSCHHHHHHH
T ss_pred EEEEECCEEEEEeHHHHhcCCCccccccCCcccccCCCCcEEE--eCC--cHHHHHHHHHHhcCCCCCCCCcCHHHHHHH
Confidence 7899999999999988865432 12211 1 23455666 344 889999999999999876543 57889999
Q ss_pred HhhcccccccccCcHHHHHH
Q 042001 114 AEFLEMTEEYCSGNLCERFD 133 (670)
Q Consensus 114 Ae~LqMte~~~~~nL~~~ce 133 (670)
|+|.++++ .+++.|+
T Consensus 78 a~fy~i~~-----l~~~~cc 92 (105)
T 1nn7_A 78 LAFFGLIP-----EIIGDCC 92 (105)
T ss_dssp HHHHTCCS-----CCBCHHH
T ss_pred HHHcCCCH-----HHHHHHH
Confidence 99999975 4456655
No 35
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A
Probab=92.43 E-value=0.14 Score=47.97 Aligned_cols=80 Identities=16% Similarity=0.228 Sum_probs=59.1
Q ss_pred CCeeEEEEECCeEEeeccchhcccchH-HHhh----h--cCCCeEEeCCCCCCCHHHHHHHHHHHhcCccccccc-hHhh
Q 042001 38 LPVSIRVRVGNRTFNLHKFPLFSKSGY-FKKR----L--NESNEYELPQHFPGGPETFEMIVLFIYGSSTLIDPF-NVTA 109 (670)
Q Consensus 38 ~~~DV~V~Vg~~~F~lHK~vLas~S~Y-Fr~l----f--s~~~~I~L~~d~PGGaeaFElv~~FcYg~~i~It~~-NV~~ 109 (670)
...=|+|.|||+.|...+..|...-+- |.+. + .+..++-| |=. ++.|+.|++|.-+|++.+.++ .+..
T Consensus 33 ~~~~V~LNVGG~~F~T~~~TL~~~P~S~L~~~~~~~~~~~~~g~yFi--DRd--p~~F~~ILnflR~G~l~~p~~~~~~~ 108 (140)
T 2nz0_B 33 QDELIVLNVSGRRFQTWRTTLERYPDTLLGSTEKEFFFNEDTKEYFF--DRD--PEVFRCVLNFYRTGKLHYPRYECISA 108 (140)
T ss_dssp CCCEEEEEETTEEEEEEHHHHHTCTTSTTTSGGGGGSEETTTTEEEE--CSC--HHHHHHHHHHHHHSSBCCCTTSCHHH
T ss_pred CCCEEEEEECCEEEEeeHHHHhcCCCeeecccCCcccccCCCCeEEE--eCC--cHHHHHHHHHHhcCCcCCCCCcCHHH
Confidence 345578899999999999888654321 1111 1 23456666 445 999999999999999876543 5788
Q ss_pred HHHHHhhccccc
Q 042001 110 LRCAAEFLEMTE 121 (670)
Q Consensus 110 L~cAAe~LqMte 121 (670)
++.-|+|+++++
T Consensus 109 l~eEa~fy~i~~ 120 (140)
T 2nz0_B 109 YDDELAFYGILP 120 (140)
T ss_dssp HHHHHHHHTCCG
T ss_pred HHHHHHHcCCCh
Confidence 999999999985
No 36
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=79.12 E-value=2.6 Score=32.64 Aligned_cols=34 Identities=12% Similarity=-0.043 Sum_probs=29.9
Q ss_pred hhhHHHhHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 042001 556 CELSRTDYESTSFRIQNLEQELMSLKRSVVQNIS 589 (670)
Q Consensus 556 ~~~lr~~~~~~~~Rv~~LEke~~~mk~~l~~~~~ 589 (670)
-..||...+..-.||++||..|..+.+++++.++
T Consensus 6 l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~ 39 (48)
T 3vmx_A 6 ILRLKQINIQLATKIQHLEFSCSEKEQEIERLNK 39 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 3458999999999999999999999999988754
No 37
>1pd7_B MAD1; PAH2, SIN3, eukaryotic transcriptional regulation, protein-protein interactions; NMR {Mus musculus}
Probab=64.18 E-value=2.1 Score=29.09 Aligned_cols=16 Identities=38% Similarity=0.520 Sum_probs=14.2
Q ss_pred chHhhHHHHHhhcccc
Q 042001 105 FNVTALRCAAEFLEMT 120 (670)
Q Consensus 105 ~NV~~L~cAAe~LqMt 120 (670)
.||+.|+.||+||+=-
T Consensus 3 ~nvq~LLeAAeyLErr 18 (26)
T 1pd7_B 3 MNIQMLLEAADYLERR 18 (26)
T ss_dssp CSTHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH
Confidence 5999999999999864
No 38
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=62.98 E-value=12 Score=29.19 Aligned_cols=37 Identities=22% Similarity=0.167 Sum_probs=33.1
Q ss_pred hhhhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 042001 551 LAMKSCELSRTDYESTSFRIQNLEQELMSLKRSVVQN 587 (670)
Q Consensus 551 ~~~~~~~~lr~~~~~~~~Rv~~LEke~~~mk~~l~~~ 587 (670)
.-+.||-+||.+++.-+.-+..||-|-+.||..+...
T Consensus 14 ~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk~l 50 (54)
T 1deb_A 14 ALKMENSNLRQELEDNSNHLTKLETEASNMKEVLKQL 50 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHHHH
Confidence 4467889999999999999999999999999998665
No 39
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=61.55 E-value=10 Score=29.74 Aligned_cols=32 Identities=22% Similarity=0.226 Sum_probs=27.9
Q ss_pred hhhHHHhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 042001 556 CELSRTDYESTSFRIQNLEQELMSLKRSVVQN 587 (670)
Q Consensus 556 ~~~lr~~~~~~~~Rv~~LEke~~~mk~~l~~~ 587 (670)
.+.||.+++.++.||.+|.+++..+++.|.+.
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~~el~~~l~~~ 52 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEENKKLKAKLAQY 52 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34589999999999999999999999988753
No 40
>1vjh_A BET V I allergen family; structural genomics, center for eukaryotic structural genomics, protein structure initiative, CESG, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.129.3.1 PDB: 2q3q_A
Probab=54.99 E-value=9.2 Score=34.25 Aligned_cols=33 Identities=3% Similarity=0.096 Sum_probs=25.7
Q ss_pred hhcCCCCCChhHHHHHHHhcCCcccccchhHHHHHHHHHHHccc
Q 042001 400 HITSDPKMEPKRFMELVETVPVSWRQSHDQLYRAMIIFLKAHRH 443 (670)
Q Consensus 400 EiA~D~nL~~~kF~~LAealP~~AR~~hDgLYRAIDiYLKaHp~ 443 (670)
|...|.+.+|.++.+.+ .++++|||.||-+||.
T Consensus 90 e~~~~~~~~p~~~~~~~-----------~~~~k~ie~yll~~p~ 122 (122)
T 1vjh_A 90 EKVHKDIDDPHSIIDES-----------VKYFKKLDEAILNFKE 122 (122)
T ss_dssp EESSTTSCCSHHHHHHH-----------HHHHHHHHHHHHHC--
T ss_pred EECCCCCCCHHHHHHHH-----------HHHHHHHHHHHhhCCC
Confidence 55677888888886554 7899999999999984
No 41
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=52.74 E-value=31 Score=38.21 Aligned_cols=78 Identities=13% Similarity=0.121 Sum_probs=56.5
Q ss_pred eeEEEEECCeEEeeccchhcccchHH-Hhhh-------cCCCeEEeCCCCCCCHHHHHHHHHHHhc-Cccccccc-hHhh
Q 042001 40 VSIRVRVGNRTFNLHKFPLFSKSGYF-KKRL-------NESNEYELPQHFPGGPETFEMIVLFIYG-SSTLIDPF-NVTA 109 (670)
Q Consensus 40 ~DV~V~Vg~~~F~lHK~vLas~S~YF-r~lf-------s~~~~I~L~~d~PGGaeaFElv~~FcYg-~~i~It~~-NV~~ 109 (670)
-=|+|.|||+.|...+..|...-+-+ -+++ .+..+.-+ |=. |+.|+.+++|..+ |++.+.++ .+..
T Consensus 52 ~~v~lNVgG~~f~t~~~tL~~~p~s~l~~~~~~~~~~~~~~~~~f~--DR~--~~~F~~IL~~~r~~g~l~~p~~~~~~~ 127 (514)
T 2r9r_B 52 ERVVINISGLRFETQLKTLAQFPETLLGDPKKRMRYFDPLRNEYFF--DRN--RPSFDAILYYYQSGGRLRRPVNVPLDI 127 (514)
T ss_dssp CEEEEEETTEEEEEEHHHHTTSTTSTTTCHHHHGGGEETTTTEEEE--CSC--HHHHHHHHHHHHHTSCCCCCTTSCHHH
T ss_pred CEEEEEeCCEEEEecHHHHhcCCCCcccccccCCcccCCCCCCEEE--cCC--hHHHHHHHHHHhcCCccccCCcccHHH
Confidence 34678999999999998886543221 1122 24456666 344 9999999999999 88765433 5667
Q ss_pred HHHHHhhccccc
Q 042001 110 LRCAAEFLEMTE 121 (670)
Q Consensus 110 L~cAAe~LqMte 121 (670)
+..-|+|.++.+
T Consensus 128 ~~~E~~f~~i~~ 139 (514)
T 2r9r_B 128 FSEEIRFYELGE 139 (514)
T ss_dssp HHHHHHHTTCCH
T ss_pred HHHHHHhcCCCH
Confidence 899999999986
No 42
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=50.25 E-value=19 Score=28.65 Aligned_cols=39 Identities=10% Similarity=-0.029 Sum_probs=30.2
Q ss_pred hhhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 042001 552 AMKSCELSRTDYESTSFRIQNLEQELMSLKRSVVQNISK 590 (670)
Q Consensus 552 ~~~~~~~lr~~~~~~~~Rv~~LEke~~~mk~~l~~~~~~ 590 (670)
+.++-..||..=.+.-..|++||..|+.|-+++.+.++.
T Consensus 9 se~q~~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~~L 47 (58)
T 3a2a_A 9 SERQLLRLKQMNVQLAAKIQHLEFSCSEKEQEIERLNKL 47 (58)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445577777888899999999999999999887553
No 43
>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.56 E-value=32 Score=29.66 Aligned_cols=35 Identities=9% Similarity=-0.124 Sum_probs=30.8
Q ss_pred ccccchHhhHHHHHhhcccccccccCcHHHHHHHHHHHhhh
Q 042001 101 LIDPFNVTALRCAAEFLEMTEEYCSGNLCERFDLYLNQVVF 141 (670)
Q Consensus 101 ~It~~NV~~L~cAAe~LqMte~~~~~nL~~~ce~FL~~~v~ 141 (670)
.|+++|...++..|+.++.+ .|.++|..|+.+...
T Consensus 7 ~L~~~NCl~i~~~A~~~~~~------~L~~~a~~fi~~nF~ 41 (105)
T 2eqx_A 7 GVQVGNCLQVMWLADRHSDP------ELYTAAKHCAKTHLA 41 (105)
T ss_dssp CCCTTTHHHHHHHHHHTTCH------HHHHHHHHHHHHTCH
T ss_pred cCCHHHHHHHHHHHHHcCCH------HHHHHHHHHHHHHHH
Confidence 68999999999999999996 499999999987653
No 44
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=30.35 E-value=41 Score=26.46 Aligned_cols=26 Identities=12% Similarity=0.077 Sum_probs=21.7
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHh
Q 042001 560 RTDYESTSFRIQNLEQELMSLKRSVV 585 (670)
Q Consensus 560 r~~~~~~~~Rv~~LEke~~~mk~~l~ 585 (670)
+..++.+..||.+||+++..|+..|+
T Consensus 43 ~~~~~~L~~ri~~Le~~l~~l~~~l~ 68 (70)
T 1zme_C 43 TKYLQQLQKDLNDKTEENNRLKALLL 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34578899999999999999988765
No 45
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=28.03 E-value=76 Score=25.42 Aligned_cols=28 Identities=21% Similarity=0.217 Sum_probs=16.4
Q ss_pred hhHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 042001 557 ELSRTDYESTSFRIQNLEQELMSLKRSV 584 (670)
Q Consensus 557 ~~lr~~~~~~~~Rv~~LEke~~~mk~~l 584 (670)
+.|...-+.++.+|..|++|+..+|..|
T Consensus 33 ~~L~~~N~~L~~~i~~L~~E~~~Lk~ll 60 (63)
T 1ci6_A 33 KELEKKNEALKERADSLAKEIQYLKDLI 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555556666666666666666554
No 46
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=26.86 E-value=59 Score=27.35 Aligned_cols=32 Identities=19% Similarity=0.148 Sum_probs=26.5
Q ss_pred hhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 042001 553 MKSCELSRTDYESTSFRIQNLEQELMSLKRSV 584 (670)
Q Consensus 553 ~~~~~~lr~~~~~~~~Rv~~LEke~~~mk~~l 584 (670)
+.+.+.||..+...--|+.+||.|..-+|...
T Consensus 14 REEVevLKe~I~EL~e~~~qLE~EN~~Lk~~a 45 (78)
T 1dip_A 14 REEVEILKEQIRELVEKNSQLERENTLLKTLA 45 (78)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 44567789888889999999999999888765
No 47
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}
Probab=24.95 E-value=85 Score=28.33 Aligned_cols=46 Identities=11% Similarity=-0.046 Sum_probs=35.4
Q ss_pred HHHHHHHHHhcCccccccchHhhHHHHHhhcccccccccCcHHHHHHHHHHHhhh
Q 042001 87 TFEMIVLFIYGSSTLIDPFNVTALRCAAEFLEMTEEYCSGNLCERFDLYLNQVVF 141 (670)
Q Consensus 87 aFElv~~FcYg~~i~It~~NV~~L~cAAe~LqMte~~~~~nL~~~ce~FL~~~v~ 141 (670)
..+.+.+|+-. .++++|+..++..|+..++. .|.+.|..|+.+...
T Consensus 120 l~~~c~~~l~~---~l~~~n~~~~~~~A~~~~~~------~L~~~~~~~i~~~~~ 165 (172)
T 3htm_A 120 LKVMCEDALCS---NLSVENAAEILILADLHSAD------QLKTQAVDFINYHAT 165 (172)
T ss_dssp HHHHHHHHHHH---TCCTTTHHHHHHHHHHTTCH------HHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHH---hCCHHHHHHHHHHHHHhCcH------HHHHHHHHHHHHHHH
Confidence 34444555442 58999999999999999996 499999999987653
No 48
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=23.40 E-value=1e+02 Score=24.60 Aligned_cols=29 Identities=17% Similarity=0.088 Sum_probs=17.2
Q ss_pred hHHHhHHHHHHHHHHHHHHHHHHHHHHhh
Q 042001 558 LSRTDYESTSFRIQNLEQELMSLKRSVVQ 586 (670)
Q Consensus 558 ~lr~~~~~~~~Rv~~LEke~~~mk~~l~~ 586 (670)
.|..+-+.++..|..|+.|+..++..|..
T Consensus 34 ~L~~~n~~L~~ei~~L~~e~~~Lk~~l~~ 62 (63)
T 2wt7_A 34 QLEDEKSALQTEIANLLKEKEKLEFILAA 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35555555666666666666666665543
No 49
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=21.38 E-value=1e+02 Score=25.68 Aligned_cols=29 Identities=14% Similarity=0.266 Sum_probs=20.3
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 042001 559 SRTDYESTSFRIQNLEQELMSLKRSVVQN 587 (670)
Q Consensus 559 lr~~~~~~~~Rv~~LEke~~~mk~~l~~~ 587 (670)
+..+.+..+..|.+||.|+..+|..++++
T Consensus 3 l~~e~~~~~~~i~~lE~eL~~~r~e~~~q 31 (74)
T 2xv5_A 3 SARERDTSRRLLAEKEREMAEMRARMQQQ 31 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566667777777777777777777655
No 50
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=20.85 E-value=97 Score=27.39 Aligned_cols=28 Identities=18% Similarity=0.272 Sum_probs=23.1
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 042001 560 RTDYESTSFRIQNLEQELMSLKRSVVQN 587 (670)
Q Consensus 560 r~~~~~~~~Rv~~LEke~~~mk~~l~~~ 587 (670)
...+++.+.+|.+||+|+..|++.+...
T Consensus 11 ~e~~~~lr~ei~~Le~E~~rLr~~~~~L 38 (100)
T 1go4_E 11 REEADTLRLKVEELEGERSRLEEEKRML 38 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4588889999999999999999888553
No 51
>1e09_A PRU AV 1; allergen, major cherry allergen, pathogenesis-related protein, heteronuclear structure; NMR {Prunus avium} SCOP: d.129.3.1 PDB: 1h2o_A 2lpx_A
Probab=20.57 E-value=57 Score=30.09 Aligned_cols=37 Identities=14% Similarity=0.349 Sum_probs=27.3
Q ss_pred hhcCCCCCChhHHHHHHHhcCCcccccchhHHHHHHHHHHHcccc
Q 042001 400 HITSDPKMEPKRFMELVETVPVSWRQSHDQLYRAMIIFLKAHRHL 444 (670)
Q Consensus 400 EiA~D~nL~~~kF~~LAealP~~AR~~hDgLYRAIDiYLKaHp~l 444 (670)
|...+.++++.+.... ...-.++|+|||.||.+||..
T Consensus 121 ~~~~~~~~~~~~~~~~--------~~~~~~~~k~ie~yll~~~~~ 157 (159)
T 1e09_A 121 HTKGNVEIKEEHVKAG--------KEKASNLFKLIETYLKGHPDA 157 (159)
T ss_dssp EECSSCCCCHHHHHHH--------HHHHHHHHHHHHHHHHHCTTS
T ss_pred EECCCCCCCHHHHHHH--------HHHHHHHHHHHHHHHHhChhh
Confidence 4556777888766422 345678999999999999963
Done!