BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042002
(143 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q99JH1|RP25L_MOUSE Ribonuclease P protein subunit p25-like protein OS=Mus musculus
GN=Rpp25l PE=2 SV=1
Length = 163
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/136 (34%), Positives = 67/136 (49%), Gaps = 9/136 (6%)
Query: 1 MDRYQRV-------EKPKAETPINENEIRITTQGRMRNYITYATTLLQEKGSNEISLKAM 53
M++Y+R P + P + E+R+ ++RN + A L+ + +
Sbjct: 1 MEQYRRAGSVELPASSPMPQLPPDTLEMRVRDGSKIRNLLGLALGRLEGGSTRHVVFSGS 60
Query: 54 GRAINKTVMIAELIKRRIVGLHQNTAIGSTDITDMWEPL--EEGLLPLETTRHVSVITVT 111
GRA K V AE++KRR+ GLHQ T + D W P + GL PL RHV + V
Sbjct: 61 GRAAGKAVSCAEIVKRRVPGLHQLTKLRFLQTEDSWVPTSPDTGLDPLTVRRHVPAVWVL 120
Query: 112 LSKKELDTSSTGYQPP 127
LS+ LD S GYQPP
Sbjct: 121 LSRDPLDPSECGYQPP 136
>sp|Q8N5L8|RP25L_HUMAN Ribonuclease P protein subunit p25-like protein OS=Homo sapiens
GN=RPP25L PE=1 SV=1
Length = 163
Score = 82.0 bits (201), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 61/120 (50%), Gaps = 2/120 (1%)
Query: 10 PKAETPINENEIRITTQGRMRNYITYATTLLQEKGSNEISLKAMGRAINKTVMIAELIKR 69
P + P + E+R+ ++RN + A L+ + + GRA K V AE++KR
Sbjct: 17 PMPQLPPDTLEMRVRDGSKIRNLLGLALGRLEGGSARHVVFSGSGRAAGKAVSCAEIVKR 76
Query: 70 RIVGLHQNTAIGSTDITDMWEPL--EEGLLPLETTRHVSVITVTLSKKELDTSSTGYQPP 127
R+ GLHQ T + D W P + GL PL RHV + V LS+ LD + GYQPP
Sbjct: 77 RVPGLHQLTKLRFLQTEDSWVPASPDTGLDPLTVRRHVPAVWVLLSRDPLDPNECGYQPP 136
>sp|Q2KIR4|RP25L_BOVIN Ribonuclease P protein subunit p25-like protein OS=Bos taurus
GN=RPP25L PE=2 SV=1
Length = 163
Score = 76.3 bits (186), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 60/120 (50%), Gaps = 2/120 (1%)
Query: 10 PKAETPINENEIRITTQGRMRNYITYATTLLQEKGSNEISLKAMGRAINKTVMIAELIKR 69
P + P + E+R+ ++RN + A L+ + + GRA K V AE++KR
Sbjct: 17 PMPQLPPDTLEMRVRAGSKIRNLLGLALERLEGGSARHVVFSGSGRAAGKAVSCAEIVKR 76
Query: 70 RIVGLHQNTAIGSTDITDMWEPL--EEGLLPLETTRHVSVITVTLSKKELDTSSTGYQPP 127
R+ GL+Q T + D W P + GL PL HV + V LS+ LD + GYQPP
Sbjct: 77 RVPGLYQLTKLRFLQTEDSWVPTSPDTGLDPLTVRSHVPAVWVLLSRDPLDPNEYGYQPP 136
>sp|Q9BUL9|RPP25_HUMAN Ribonuclease P protein subunit p25 OS=Homo sapiens GN=RPP25 PE=1
SV=1
Length = 199
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 61/119 (51%), Gaps = 10/119 (8%)
Query: 21 IRITTQGRMRNYITYATTLLQEKGSNEISLKAMGRAINKTVMIAELIKRRIVGLHQNTAI 80
+R+ ++RN + +AT + + + I GRA KTV AE++KRR+ GLHQ T +
Sbjct: 38 MRVKEGSKIRNLMAFATASMAQPATRAIVFSGCGRATTKTVTCAEILKRRLAGLHQVTRL 97
Query: 81 GSTDITDMWEPLE----EGLLPLETTRHVSV------ITVTLSKKELDTSSTGYQPPIP 129
+ ++W+ L +G P E +SV + + LSK LD GYQPP P
Sbjct: 98 RYRSVREVWQSLPPGPTQGQTPGEPAASLSVLKNVPGLAILLSKDALDPRQPGYQPPNP 156
>sp|Q91WE3|RPP25_MOUSE Ribonuclease P protein subunit p25 OS=Mus musculus GN=Rpp25 PE=2
SV=1
Length = 199
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 58/117 (49%), Gaps = 10/117 (8%)
Query: 21 IRITTQGRMRNYITYATTLLQEKGSNEISLKAMGRAINKTVMIAELIKRRIVGLHQNTAI 80
+R+ ++RN + +AT + + + I GRA KTV AE++KRR+ GLHQ T +
Sbjct: 38 MRVKEGSKIRNLLAFATASMAQPATRAIVFSGCGRATTKTVTCAEILKRRLAGLHQVTRL 97
Query: 81 GSTDITDMWEPL----------EEGLLPLETTRHVSVITVTLSKKELDTSSTGYQPP 127
+ ++W+ L + L ++V + + LSK LD GYQPP
Sbjct: 98 RYRSVREVWQSLPPGPTPGQTPSDPAASLSVLKNVPSLAILLSKDALDPRQLGYQPP 154
>sp|Q5PPN2|RPP25_RAT Ribonuclease P protein subunit p25 OS=Rattus norvegicus GN=Rpp25
PE=2 SV=1
Length = 199
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 58/117 (49%), Gaps = 10/117 (8%)
Query: 21 IRITTQGRMRNYITYATTLLQEKGSNEISLKAMGRAINKTVMIAELIKRRIVGLHQNTAI 80
+R+ ++RN + +AT + + + I GRA KTV AE++KRR+ GLHQ T +
Sbjct: 38 MRVKEGSKIRNLLAFATASMAQPATRAIVFSGCGRATTKTVTCAEILKRRLAGLHQVTRL 97
Query: 81 GSTDITDMWEPL----------EEGLLPLETTRHVSVITVTLSKKELDTSSTGYQPP 127
+ ++W+ L + L ++V + + LSK LD GYQPP
Sbjct: 98 RYRSVREVWQSLPPGPTPGQTPSDPAASLSVLKNVPSLAILLSKDALDPRQLGYQPP 154
>sp|Q9YAX2|ALBA2_AERPE DNA/RNA-binding protein Alba 2 OS=Aeropyrum pernix (strain ATCC
700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)
GN=albA2 PE=1 SV=1
Length = 102
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 49/97 (50%), Gaps = 9/97 (9%)
Query: 20 EIRITTQGRMRNYITYATTLLQEKGSNEISLKAMGRAINKTVMIAELIKRRIVGLHQNTA 79
E+RI + M NY+ T L E+G+N++ +KA GR IN+ V E++++R +N
Sbjct: 8 EVRIGRKPVM-NYVLAILTTLMEQGTNQVVVKARGRNINRAVDAVEIVRKR---FAKNIE 63
Query: 80 IGSTDITDMWEPLE--EGLLPLETTRHVSVITVTLSK 114
I I ++ EG TR VS I + L K
Sbjct: 64 IKDIKIDSQEIEVQTPEGQT---RTRRVSSIEICLEK 97
>sp|P60851|ALBA_NANEQ DNA/RNA-binding protein Alba OS=Nanoarchaeum equitans (strain
Kin4-M) GN=albA PE=3 SV=1
Length = 90
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 9/86 (10%)
Query: 31 NYITYATTLLQEKGSNEISLKAMGRAINKTVMIAELIKRRIVGLHQNTAIGSTDITDMWE 90
NY+ A + +G+NE+ +KA GR I++ V +AE +++R + G D+ D+
Sbjct: 13 NYV-MAVVMQFMQGANEVVIKARGRNISRAVDVAERVRKRFLA-------GQVDVGDIKI 64
Query: 91 PLEEGLLPLE-TTRHVSVITVTLSKK 115
EE + P R VS I + L KK
Sbjct: 65 DSEEVVDPATGQKRTVSTIEIKLVKK 90
>sp|O29195|ALBA1_ARCFU DNA/RNA-binding protein Alba 1 OS=Archaeoglobus fulgidus (strain
ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=albA1 PE=3 SV=1
Length = 89
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 52/98 (53%), Gaps = 11/98 (11%)
Query: 18 ENEIRITTQGRMRNYITYATTLLQEKGSNEISLKAMGRAINKTVMIAELIKRRIVGLHQN 77
EN + + + M NY+ T G+ E+S+KA GRAI++ V +AE++++R
Sbjct: 3 ENSVFVGNKPVM-NYVLAVLTQFNS-GATEVSIKARGRAISRAVDVAEIVRKRF------ 54
Query: 78 TAIGSTDITDMWEPLEEGLLPLETTRHVSVITVTLSKK 115
+ D+ D+ E+ + + T +VS I + L+KK
Sbjct: 55 --LPDVDVKDIKISTEQ-IDSEQGTANVSAIEIILAKK 89
>sp|Q8TXF9|ALBA1_METKA DNA/RNA-binding protein Alba 1 OS=Methanopyrus kandleri (strain
AV19 / DSM 6324 / JCM 9639 / NBRC 100938) GN=albA1 PE=3
SV=1
Length = 93
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Query: 31 NYITYATTLLQEKGSNEISLKAMGRAINKTVMIAELIKRRI 71
NY+ T E G+NE+ +KA GRAI++ V +AE+++ R
Sbjct: 17 NYVLACITQFNE-GANEVRIKARGRAISRAVDVAEIVRNRF 56
>sp|O74101|ALBA_PYRHO DNA/RNA-binding protein Alba OS=Pyrococcus horikoshii (strain
ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 /
OT-3) GN=albA PE=1 SV=1
Length = 93
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Query: 31 NYITYATTLLQEKGSNEISLKAMGRAINKTVMIAELIKRRIV 72
NY+ T E G+ E+S+KA GRAI++ V +AE+++ R +
Sbjct: 16 NYVLAVITQFHE-GAKEVSIKARGRAISRAVDVAEIVRNRFL 56
>sp|Q9V1N3|ALBA_PYRAB DNA/RNA-binding protein Alba OS=Pyrococcus abyssi (strain GE5 /
Orsay) GN=albA PE=3 SV=1
Length = 93
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Query: 31 NYITYATTLLQEKGSNEISLKAMGRAINKTVMIAELIKRRIV 72
NY+ T E G+ E+S+KA GRAI++ V +AE+++ R +
Sbjct: 16 NYVLAVITQFHE-GAKEVSIKARGRAISRAVDVAEIVRNRFL 56
>sp|Q4J973|ALBA_SULAC DNA/RNA-binding protein Alba OS=Sulfolobus acidocaldarius (strain
ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB
11770) GN=albA PE=3 SV=1
Length = 97
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 31 NYITYATTLLQEKGSNEISLKAMGRAINKTVMIAELIKRRIV 72
NY+ A TLL + G +EI++KA GRAI+K V E+++ R +
Sbjct: 20 NYVLAALTLLNQ-GVSEITIKARGRAISKAVDTVEIVRNRFL 60
>sp|Q8TZV1|ALBA_PYRFU DNA/RNA-binding protein Alba OS=Pyrococcus furiosus (strain ATCC
43587 / DSM 3638 / JCM 8422 / Vc1) GN=albA PE=3 SV=1
Length = 93
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Query: 31 NYITYATTLLQEKGSNEISLKAMGRAINKTVMIAELIKRRIV 72
NY+ T E G+ E+S+KA GRAI++ V +AE+++ R +
Sbjct: 16 NYVLAVITQFNE-GAKEVSIKARGRAISRAVDVAEIVRNRFL 56
>sp|Q2NHL8|ALBA_METST DNA/RNA-binding protein Alba OS=Methanosphaera stadtmanae (strain
DSM 3091) GN=albA PE=3 SV=1
Length = 90
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 9/84 (10%)
Query: 31 NYITYATTLLQEKGSNEISLKAMGRAINKTVMIAELIKRRIVGLHQNTAIGSTDITDMWE 90
NY+ T + G E+ LKA GRAI++ V +AE+++ R + + + S DI+
Sbjct: 16 NYVLAVVTQMN-SGVTEVILKARGRAISRAVDVAEIVRNRFI---SDVDVKSIDISTEEI 71
Query: 91 PLEEGLLPLETTRHVSVITVTLSK 114
EG T+ +VS I + LSK
Sbjct: 72 VGNEG-----TSSNVSAIEIRLSK 90
>sp|B6YWF5|ALBA_THEON DNA/RNA-binding protein Alba OS=Thermococcus onnurineus (strain
NA1) GN=albA PE=3 SV=1
Length = 91
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Query: 31 NYITYATTLLQEKGSNEISLKAMGRAINKTVMIAELIKRRIV 72
NY+ T E G+ E+S+KA GRAI++ V +AE+++ R +
Sbjct: 16 NYVLAVITQFNE-GAKEVSVKARGRAISRAVDVAEIVRNRFL 56
>sp|P60849|ALBA1_SULSO DNA/RNA-binding protein Alba 1 OS=Sulfolobus solfataricus (strain
ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=albA1 PE=1
SV=2
Length = 97
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Query: 14 TPINENEIRITTQGRMRNYITYATTLLQEKGSNEISLKAMGRAINKTVMIAELIKRRIV 72
TP N + I + M NY+ A TLL + G +EI +KA GRAI+K V E+++ R +
Sbjct: 5 TPTPSNVVLIGKKPVM-NYVLAALTLLNQ-GVSEIVIKARGRAISKAVDTVEIVRNRFL 61
>sp|P60848|ALBA1_SULSH DNA/RNA-binding protein Alba 1 OS=Sulfolobus shibatae GN=albA1
PE=1 SV=2
Length = 97
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Query: 14 TPINENEIRITTQGRMRNYITYATTLLQEKGSNEISLKAMGRAINKTVMIAELIKRRIV 72
TP N + I + M NY+ A TLL + G +EI +KA GRAI+K V E+++ R +
Sbjct: 5 TPTPSNVVLIGKKPVM-NYVLAALTLLNQ-GVSEIVIKARGRAISKAVDTVEIVRNRFL 61
>sp|Q0W252|ALBA_UNCMA DNA/RNA-binding protein Alba OS=Uncultured methanogenic archaeon
RC-I GN=albA PE=3 SV=1
Length = 96
Score = 37.0 bits (84), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Query: 31 NYITYATTLLQEKGSNEISLKAMGRAINKTVMIAELIKRRIV 72
NY+ A T E G+ E+++KA GRAI++ V AE+++ R +
Sbjct: 16 NYVLAAVTQFNE-GAKEVTIKARGRAISRAVDTAEVVRHRFL 56
>sp|A8A8V6|ALBA_IGNH4 DNA/RNA-binding protein Alba OS=Ignicoccus hospitalis (strain
KIN4/I / DSM 18386 / JCM 14125) GN=albA PE=3 SV=1
Length = 97
Score = 36.6 bits (83), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Query: 12 AETPINENEIRITTQGRMRNYITYATTLLQEKGSNEISLKAMGRAINKTVMIAELIKRRI 71
A+ P NE+R+ + M NY+ TLL + G + I +KA GRAI+K V E+++ R
Sbjct: 3 AQIP-QSNEVRVGKKPVM-NYVLATLTLLNQ-GVDRIEIKARGRAISKAVDTVEIVRNRF 59
Query: 72 VGLHQNTA---IGSTDIT 86
+ A IGS +T
Sbjct: 60 LPGQVRVAEIRIGSQTVT 77
>sp|Q971T8|ALBA1_SULTO DNA/RNA-binding protein Alba 1 OS=Sulfolobus tokodaii (strain DSM
16993 / JCM 10545 / NBRC 100140 / 7) GN=albA1 PE=3 SV=1
Length = 99
Score = 36.6 bits (83), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Query: 31 NYITYATTLLQEKGSNEISLKAMGRAINKTVMIAELIKRRIV 72
NY+ A TLL + G +EI +KA GRAI+K V E+++ R +
Sbjct: 22 NYVLAALTLLNQ-GVSEIIIKARGRAISKAVDTVEIVRNRFL 62
>sp|Q5JF39|ALBA_PYRKO DNA/RNA-binding protein Alba OS=Pyrococcus kodakaraensis (strain
ATCC BAA-918 / JCM 12380 / KOD1) GN=albA PE=3 SV=1
Length = 91
Score = 36.6 bits (83), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Query: 31 NYITYATTLLQEKGSNEISLKAMGRAINKTVMIAELIKRRIV 72
NY+ T E G+ E+S++A GRAI++ V +AE+++ R +
Sbjct: 16 NYVLAVITQFNE-GAKEVSIRARGRAISRAVDVAEIVRNRFL 56
>sp|O28323|ALBA2_ARCFU DNA/RNA-binding protein Alba 2 OS=Archaeoglobus fulgidus (strain
ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=albA2 PE=1 SV=1
Length = 89
Score = 36.2 bits (82), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
Query: 31 NYITYATTLLQEKGSNEISLKAMGRAINKTVMIAELIKRRI 71
NY+ T L E G++E+ +KA GRAI++ V +AE+++ R
Sbjct: 15 NYVLATLTQLNE-GADEVVIKARGRAISRAVDVAEIVRNRF 54
>sp|A4YHK0|ALBA_METS5 DNA/RNA-binding protein Alba OS=Metallosphaera sedula (strain
ATCC 51363 / DSM 5348) GN=albA PE=3 SV=1
Length = 98
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 31 NYITYATTLLQEKGSNEISLKAMGRAINKTVMIAELIKRRIV 72
NY+ A TLL + G EI +KA GRAI+K V E+++ R +
Sbjct: 21 NYVLAALTLLNQ-GVPEIIIKARGRAISKAVDTVEIVRNRFL 61
>sp|Q9YAW1|ALBA1_AERPE DNA/RNA-binding protein Alba 1 OS=Aeropyrum pernix (strain ATCC
700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)
GN=albA1 PE=3 SV=2
Length = 94
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 10/84 (11%)
Query: 31 NYITYATTLLQEKGSNEISLKAMGRAINKTVMIAELIKRRIVGLHQNTAIGSTDITDMWE 90
NY+ A LL E+G+ E+ +KA GR I V E++K + +N I +I E
Sbjct: 20 NYVMAALKLLNEEGAPEVVIKARGRNICNAVDTVEMLKNLFI---KNLVIKKVNIYS--E 74
Query: 91 PLEEGLLPLETTRHVSVITVTLSK 114
L+ E + VS I + ++K
Sbjct: 75 SLDS-----EGKKKVSAIEIVVAK 93
>sp|Q57665|ALBA_METJA DNA/RNA-binding protein Alba OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 /
NBRC 100440) GN=albA PE=1 SV=1
Length = 87
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Query: 31 NYITYATTLLQEKGSNEISLKAMGRAINKTVMIAELIKRRI 71
NY+ L Q ++E+ +KA G+AINK V +AE+I+ R
Sbjct: 14 NYVV--AVLTQLTSNDEVIIKARGKAINKAVDVAEMIRNRF 52
>sp|Q8TWE6|ALBA2_METKA DNA/RNA-binding protein Alba 2 OS=Methanopyrus kandleri (strain
AV19 / DSM 6324 / JCM 9639 / NBRC 100938) GN=albA2 PE=3
SV=1
Length = 93
Score = 33.1 bits (74), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 31 NYITYATTLLQEKGSNEISLKAMGRAINKTVMIAELIKRRI 71
NY+ T E G++E+ L A GRAI++ V +AE I+ +
Sbjct: 16 NYVLAVMTQFSE-GADEVKLVARGRAISRAVDVAEFIRNNV 55
>sp|P60850|ALBA_METMP DNA/RNA-binding protein Alba OS=Methanococcus maripaludis (strain
S2 / LL) GN=albA PE=3 SV=1
Length = 89
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 18 ENEIRITTQGRMRNYITYATTLLQEKGSNEISLKAMGRAINKTVMIAELIKRRI 71
+N + + +G M NY+ T + + E+ +KA G+AI++ V + E++ +R
Sbjct: 2 DNIVYVGNKGVM-NYVLAVITQFNSENAQEVIVKARGKAISRAVDVEEMVTKRF 54
>sp|O27527|ALBA_METTH DNA/RNA-binding protein Alba OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=albA PE=1 SV=2
Length = 91
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 31 NYITYATTLLQEKGSNEISLKAMGRAINKTVMIAELIKRRIV 72
NY+ T + G++E+ LKA G AI++ V +AE+++ R +
Sbjct: 16 NYVLAVVTQMN-GGTSEVILKARGIAISRAVDVAEIVRNRFI 56
>sp|Q6KZR7|ALBA_PICTO DNA/RNA-binding protein Alba OS=Picrophilus torridus (strain ATCC
700027 / DSM 9790 / JCM 10055 / NBRC 100828) GN=albA
PE=3 SV=1
Length = 90
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 24/42 (57%)
Query: 31 NYITYATTLLQEKGSNEISLKAMGRAINKTVMIAELIKRRIV 72
NY+ T ++ I +KA G+AI+K V IAE+ + + +
Sbjct: 16 NYVLAIVTQFNNNSTSRIVIKARGKAISKAVDIAEITRHKFI 57
>sp|A0B9P8|ALBA_METTP DNA/RNA-binding protein Alba OS=Methanosaeta thermophila (strain
DSM 6194 / PT) GN=albA PE=3 SV=1
Length = 89
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 31 NYITYATTLLQEKGSNEISLKAMGRAINKTVMIAELIKRRIVG 73
NY+ T G+ E+ + A GRAI++ V +AE+ + R +G
Sbjct: 16 NYVLAVVTQFNS-GAKEVRIMARGRAISRAVDVAEVSRSRFLG 57
>sp|Q9MUR4|ODPB_MESVI Pyruvate dehydrogenase E1 component subunit beta OS=Mesostigma
viride GN=pdhB PE=3 SV=1
Length = 327
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 34/67 (50%), Gaps = 12/67 (17%)
Query: 11 KAETPINENEIRITTQGRMRNYITYATTLLQEKGSNE-----ISLK-----AMGRAINKT 60
KAE N+I I T RMR + A +L EKG + ISLK +G++I KT
Sbjct: 194 KAEIVRQGNDITILTYSRMRYNVIQAVKVLVEKGYDPEIIDLISLKPFDIETIGKSIQKT 253
Query: 61 --VMIAE 65
V+I E
Sbjct: 254 HKVLIVE 260
>sp|Q1ACL0|ODPB_CHAVU Pyruvate dehydrogenase E1 component subunit beta OS=Chara vulgaris
GN=pdhB PE=3 SV=1
Length = 326
Score = 29.3 bits (64), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 40/83 (48%), Gaps = 13/83 (15%)
Query: 11 KAETPINENEIRITTQGRMRNYITYATTLLQEKGSNE-----ISLKA--MG------RAI 57
KAE + N+I I T RMR ++ A L EKG + ISLK MG R
Sbjct: 194 KAELVRSGNQITILTYSRMRYHVLQAAKTLIEKGYDPEIIDIISLKPLDMGTISTSLRKT 253
Query: 58 NKTVMIAELIKRRIVGLHQNTAI 80
+K +++ E +K +G +AI
Sbjct: 254 HKVLIVEECMKTGGIGTTLKSAI 276
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.130 0.369
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,721,686
Number of Sequences: 539616
Number of extensions: 1791974
Number of successful extensions: 3466
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 3426
Number of HSP's gapped (non-prelim): 41
length of query: 143
length of database: 191,569,459
effective HSP length: 106
effective length of query: 37
effective length of database: 134,370,163
effective search space: 4971696031
effective search space used: 4971696031
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)