Query 042002
Match_columns 143
No_of_seqs 104 out of 337
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 22:30:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042002.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042002hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2h9u_A DNA/RNA-binding protein 100.0 1.8E-27 6.3E-32 167.8 13.2 93 18-118 6-101 (102)
2 1nfj_A ALBA, conserved hypothe 99.9 1.9E-26 6.6E-31 158.9 12.1 86 17-114 2-89 (89)
3 2bky_A DNA/RNA-binding protein 99.9 3.1E-26 1.1E-30 160.1 13.0 89 15-115 6-97 (97)
4 1nh9_A MJA10B, DNA-binding pro 99.9 4.5E-26 1.6E-30 156.5 11.6 84 18-114 2-87 (87)
5 3toe_A MTH10B, DNA/RNA-binding 99.9 5.7E-24 1.9E-28 146.8 11.9 89 17-115 3-91 (91)
6 2bky_X DNA/RNA-binding protein 99.9 3.6E-22 1.2E-26 137.5 10.4 85 16-115 4-88 (89)
7 1vm0_A Unknown protein; struct 99.8 2.4E-19 8.1E-24 130.7 10.5 91 15-116 17-108 (130)
8 3iab_B Ribonucleases P/MRP pro 99.8 2.9E-18 9.9E-23 126.1 13.6 95 18-113 30-139 (140)
9 3iab_A Ribonucleases P/MRP pro 98.5 2.9E-06 1E-10 63.1 12.4 98 21-124 47-155 (158)
10 2ek0_A Stage V sporulation pro 56.7 41 0.0014 22.4 11.8 65 19-85 2-69 (90)
11 2k9u_B Filamin-binding LIM pro 41.7 12 0.00041 19.3 1.3 14 101-114 6-19 (26)
12 2crq_A Mitochondrial translati 30.9 98 0.0033 21.1 5.1 58 16-74 13-77 (112)
13 3sho_A Transcriptional regulat 29.5 1.2E+02 0.0042 21.0 5.7 37 31-69 27-63 (187)
14 1m3s_A Hypothetical protein YC 26.1 1.2E+02 0.0042 21.0 5.1 37 31-69 25-61 (186)
15 3s2u_A UDP-N-acetylglucosamine 25.2 86 0.003 24.6 4.6 32 46-80 3-36 (365)
16 1jeo_A MJ1247, hypothetical pr 23.8 1.4E+02 0.0048 20.5 5.0 37 31-69 28-64 (180)
17 3eua_A Putative fructose-amino 23.6 2.2E+02 0.0077 22.1 6.7 46 29-74 9-54 (329)
18 1qys_A TOP7; alpha-beta, novel 21.8 1.7E+02 0.006 19.0 4.9 53 20-72 20-72 (106)
19 3fxa_A SIS domain protein; str 21.7 2E+02 0.007 20.1 5.7 38 31-69 32-69 (201)
20 3lso_A Putative membrane ancho 20.7 90 0.0031 26.4 3.8 24 101-124 87-111 (489)
No 1
>2h9u_A DNA/RNA-binding protein ALBA 2; archaea, DNA binding protein, structural G NPPSFA, national project on protein structural and function analyses; 2.00A {Aeropyrum pernix} PDB: 3u6y_A*
Probab=99.95 E-value=1.8e-27 Score=167.75 Aligned_cols=93 Identities=33% Similarity=0.504 Sum_probs=85.2
Q ss_pred CCeEEEcCCCchhHHHHHHH-HHHhhcCCCeEEEEEcChhHHHHHHHHHHHHHhc-CCce-eEEEEEEEEeecceeeccc
Q 042002 18 ENEIRITTQGRMRNYITYAT-TLLQEKGSNEISLKAMGRAINKTVMIAELIKRRI-VGLH-QNTAIGSTDITDMWEPLEE 94 (143)
Q Consensus 18 ~n~I~V~~~~~i~~yv~~a~-~lL~~~~~~~Vvi~g~G~AI~kAV~vAEilKrr~-~gL~-q~~~i~~v~i~d~~~p~~e 94 (143)
+|+|||++++.+ +||.+|+ .+|++ |.++|+|+|+|+||+|||+|||+||+|+ +||| |.++|++..+.|+|+ +
T Consensus 6 ~n~I~V~~k~~~-nyV~~a~~~ll~~-g~~eV~ikA~G~AIskAV~vaEilk~r~~~gl~~q~i~i~s~~i~d~~e---~ 80 (102)
T 2h9u_A 6 APEVRIGRKPVM-NYVLAILTTLMEQ-GTNQVVVKARGRNINRAVDAVEIVRKRFAKNIEIKDIKIDSQEIEVQTP---E 80 (102)
T ss_dssp CCEEECCSSCHH-HHHHHHHHHHTST-TCCEEEEEEETTHHHHHHHHHHHHHHHTTTTEEEEEEEEEEEEEEEECT---T
T ss_pred CCEEEEcCCCHH-HHHHHHHHHHHhC-CCCEEEEEEechhhhHHHHHHHHHHHhccCCceEEEEEEeeEEEecccc---C
Confidence 599999999985 9999999 99995 8999999999999999999999999999 8999 999999999998854 5
Q ss_pred CCccceeeeeeeEEEEEEecCCCC
Q 042002 95 GLLPLETTRHVSVITVTLSKKELD 118 (143)
Q Consensus 95 g~~~~~~~R~vs~I~I~Lsk~~ld 118 (143)
|+. .+|+||+|+|+|++.|..
T Consensus 81 g~~---~~r~vS~IeI~Lsk~~~~ 101 (102)
T 2h9u_A 81 GQT---RTRRVSSIEICLEKAGES 101 (102)
T ss_dssp SCE---EEEEEEEEEEEEEECSSC
T ss_pred Ccc---ceeEeeeEEEEEEccCCC
Confidence 633 799999999999998753
No 2
>1nfj_A ALBA, conserved hypothetical protein AF1956; SIR2, HDAC, gene regulation, transcription; 2.00A {Archaeoglobus fulgidus} SCOP: d.68.6.1 PDB: 1nfh_A 2z7c_A*
Probab=99.94 E-value=1.9e-26 Score=158.94 Aligned_cols=86 Identities=31% Similarity=0.573 Sum_probs=78.6
Q ss_pred CCCeEEEcCCCchhHHHHHHHHHHhhcCCCeEEEEEcChhHHHHHHHHHHHHHhc-CCce-eEEEEEEEEeecceeeccc
Q 042002 17 NENEIRITTQGRMRNYITYATTLLQEKGSNEISLKAMGRAINKTVMIAELIKRRI-VGLH-QNTAIGSTDITDMWEPLEE 94 (143)
Q Consensus 17 ~~n~I~V~~~~~i~~yv~~a~~lL~~~~~~~Vvi~g~G~AI~kAV~vAEilKrr~-~gL~-q~~~i~~v~i~d~~~p~~e 94 (143)
.+|+|||++++ +.+||.+|+.+|++ |+++|+|||+|+||+|||++||+||+|+ +||| |.++|++..+.+ ++
T Consensus 2 ~~n~I~V~~k~-v~~yV~~~~~~l~~-g~~eV~ika~G~AIskAV~vaeilk~r~~~gl~i~~i~i~s~~i~~-----e~ 74 (89)
T 1nfj_A 2 AEHVVYVGNKP-VMNYVLATLTQLNE-GADEVVIKARGRAISRAVDVAEIVRNRFMPGVKVKEIKIDTEELES-----EQ 74 (89)
T ss_dssp -CEEEECCSSC-HHHHHHHHHHHHHT-TCSEEEEEEETTHHHHHHHHHHHHHHHTCTTCEEEEEEEEEEECCC-----BT
T ss_pred CCCEEEEcCCC-HHHHHHHHHHHHhC-CCCEEEEEEecHHHHHHHHHHHHHHHhccCCcEEEEEEEeEEEEEc-----CC
Confidence 57999999999 67999999999995 8999999999999999999999999999 8999 999999888765 46
Q ss_pred CCccceeeeeeeEEEEEEec
Q 042002 95 GLLPLETTRHVSVITVTLSK 114 (143)
Q Consensus 95 g~~~~~~~R~vs~I~I~Lsk 114 (143)
| ++|++|+|+|+|+|
T Consensus 75 g-----~~r~vs~IeI~L~k 89 (89)
T 1nfj_A 75 G-----RRSNVSTIEIVLAK 89 (89)
T ss_dssp T-----BCCEEEEEEEEEEC
T ss_pred C-----cEEEeeEEEEEEEC
Confidence 6 78999999999986
No 3
>2bky_A DNA/RNA-binding protein ALBA 1; archaeal DNA binding protein, DNA condensation, DNA-binding, DNA binding protein; 1.70A {Sulfolobus solfataricus} SCOP: d.68.6.1 PDB: 1h0x_A* 1h0y_A* 1y9x_A
Probab=99.94 E-value=3.1e-26 Score=160.14 Aligned_cols=89 Identities=35% Similarity=0.561 Sum_probs=79.5
Q ss_pred CCCCCeEEEcCCCchhHHHHHHHHHHhhcCCCeEEEEEcChhHHHHHHHHHHHHHhcC-C-c-eeEEEEEEEEeecceee
Q 042002 15 PINENEIRITTQGRMRNYITYATTLLQEKGSNEISLKAMGRAINKTVMIAELIKRRIV-G-L-HQNTAIGSTDITDMWEP 91 (143)
Q Consensus 15 ~~~~n~I~V~~~~~i~~yv~~a~~lL~~~~~~~Vvi~g~G~AI~kAV~vAEilKrr~~-g-L-~q~~~i~~v~i~d~~~p 91 (143)
++++|+|||++++ +.+||.+|+.+|++ |.++|+|+|+|+||+|||++||+||+|+. + | ||.++|++..+.+
T Consensus 6 ~~~~n~I~V~~k~-v~~YV~~a~~ll~~-g~~eV~ikA~G~AIskAV~vaeilk~r~~~~~l~~~~i~i~s~~i~~---- 79 (97)
T 2bky_A 6 PTPSNVVLIGKKP-VMNYVLAALTLLNQ-GVSEIVIKARGRAISKAVDTVEIVRNRFLPDKIEIKEIRVGSQVVTS---- 79 (97)
T ss_dssp ---CCEEECCSSC-HHHHHHHHHHHHHT-TCCEEEEEEETTHHHHHHHHHHHHHHHTSTTTEEEEEEEEEEEEEEE----
T ss_pred CCCCCEEEEcCcC-HHHHHHHHHHHHhC-CCCEEEEEEechHHHHHHHHHHHHHHhccCCceEEEEEEeeeEEEec----
Confidence 5678999999999 88999999999995 89999999999999999999999999994 4 8 8999999999877
Q ss_pred cccCCccceeeeeeeEEEEEEecC
Q 042002 92 LEEGLLPLETTRHVSVITVTLSKK 115 (143)
Q Consensus 92 ~~eg~~~~~~~R~vs~I~I~Lsk~ 115 (143)
++| .+|++|+|+|+|+|.
T Consensus 80 -e~G-----~~r~vS~IeI~L~k~ 97 (97)
T 2bky_A 80 -QDG-----RQSRVSTIEIAIRKK 97 (97)
T ss_dssp -TTS-----CEEEEEEEEEEEEEC
T ss_pred -CCC-----cEEEeeEEEEEEEcC
Confidence 356 789999999999974
No 4
>1nh9_A MJA10B, DNA-binding protein ALBA; 2.00A {Methanocaldococcus jannaschii} SCOP: d.68.6.1
Probab=99.94 E-value=4.5e-26 Score=156.49 Aligned_cols=84 Identities=32% Similarity=0.548 Sum_probs=73.2
Q ss_pred CCeEEEcCCCchhHHHHHHHHHHhhcCCCeEEEEEcChhHHHHHHHHHHHHHhc-CCce-eEEEEEEEEeecceeecccC
Q 042002 18 ENEIRITTQGRMRNYITYATTLLQEKGSNEISLKAMGRAINKTVMIAELIKRRI-VGLH-QNTAIGSTDITDMWEPLEEG 95 (143)
Q Consensus 18 ~n~I~V~~~~~i~~yv~~a~~lL~~~~~~~Vvi~g~G~AI~kAV~vAEilKrr~-~gL~-q~~~i~~v~i~d~~~p~~eg 95 (143)
+|+|||+++ ++.+||.+|+.+|++ + ++|+|+|+|+||+|||++||+||+|+ +||| |.++|++..+.+ ++|
T Consensus 2 ~n~I~V~~k-~v~~YV~~~~~~l~~-g-~eV~ikA~G~AIskAV~vaeilk~r~~~~l~v~~i~i~s~~i~~-----e~g 73 (87)
T 1nh9_A 2 DNVVLIGKK-PVMNYVVAVLTQLTS-N-DEVIIKARGKAINKAVDVAEMIRNRFIKDIKIKKIEIGTDKVKN-----PDG 73 (87)
T ss_dssp CSEEEECSS-CHHHHHHHHHHHHHH-C-SEEEEEEEGGGHHHHHHHHHHHHHHTCTTCEEEEEEEEEEC-----------
T ss_pred CCEEEEeCc-chHHHHHHHHHHhcC-C-CEEEEEEechHHHHHHHHHHHHHHhccCCeEEEEEEEeEEEEEc-----CCC
Confidence 699999999 788999999999996 7 99999999999999999999999999 7899 999999988876 356
Q ss_pred CccceeeeeeeEEEEEEec
Q 042002 96 LLPLETTRHVSVITVTLSK 114 (143)
Q Consensus 96 ~~~~~~~R~vs~I~I~Lsk 114 (143)
.+|++|+|+|+|+|
T Consensus 74 -----~~r~vS~IeI~L~k 87 (87)
T 1nh9_A 74 -----REVNVSTIEIVLAK 87 (87)
T ss_dssp ------CCCEEEEEEEEEC
T ss_pred -----cEEEeeEEEEEEEC
Confidence 68999999999986
No 5
>3toe_A MTH10B, DNA/RNA-binding protein ALBA; SAC10B family, alpha/beta mixed, homodimer, unknown function; 2.20A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=99.91 E-value=5.7e-24 Score=146.84 Aligned_cols=89 Identities=34% Similarity=0.461 Sum_probs=79.7
Q ss_pred CCCeEEEcCCCchhHHHHHHHHHHhhcCCCeEEEEEcChhHHHHHHHHHHHHHhcCCceeEEEEEEEEeecceeecccCC
Q 042002 17 NENEIRITTQGRMRNYITYATTLLQEKGSNEISLKAMGRAINKTVMIAELIKRRIVGLHQNTAIGSTDITDMWEPLEEGL 96 (143)
Q Consensus 17 ~~n~I~V~~~~~i~~yv~~a~~lL~~~~~~~Vvi~g~G~AI~kAV~vAEilKrr~~gL~q~~~i~~v~i~d~~~p~~eg~ 96 (143)
++|.|+|++|+-+ +||.+|+.+|++ |.++|+|+|+|+||+|||++||+||+||.+ .++++++++.++|.+.++|
T Consensus 3 ~~~vv~vg~Kpv~-~YV~~~i~~~n~-g~~eV~ikA~G~aIskAVdvaei~k~R~~~---~v~v~~I~I~se~~~~e~G- 76 (91)
T 3toe_A 3 EENVVYIGNKPVM-NYVLAVVTQMNG-GTSEVILKARGIAISRAVDVAEIVRNRFIP---DIQIENIDICTEEIIGNEG- 76 (91)
T ss_dssp --CCEECCSSCHH-HHHHHHHHHHHT-TCCEEEEEEETTHHHHHHHHHHHHHHHTCT---TCEEEEEEEEEEEEECTTS-
T ss_pred ccCEEEECCCcHH-HHHHHHHHHHhC-CCCEEEEEEehhHHHHHHHHHHHHHHhccC---CcEEEEEEeeeEEeecCCC-
Confidence 4789999999955 999999999995 899999999999999999999999999843 2499999999999999998
Q ss_pred ccceeeeeeeEEEEEEecC
Q 042002 97 LPLETTRHVSVITVTLSKK 115 (143)
Q Consensus 97 ~~~~~~R~vs~I~I~Lsk~ 115 (143)
.+|+||+|+|+|+++
T Consensus 77 ----~~r~VS~IeI~L~k~ 91 (91)
T 3toe_A 77 ----TATNVSAIEIQLRKD 91 (91)
T ss_dssp ----SEEEEEEEEEEEEC-
T ss_pred ----ceeEeeEEEEEEECC
Confidence 799999999999985
No 6
>2bky_X DNA/RNA-binding protein ALBA 2; archaeal DNA binding protein, DNA condensation, DNA-binding, DNA binding protein; 1.70A {Sulfolobus solfataricus} SCOP: d.68.6.1 PDB: 2a2y_A 1udv_A
Probab=99.88 E-value=3.6e-22 Score=137.50 Aligned_cols=85 Identities=21% Similarity=0.253 Sum_probs=70.5
Q ss_pred CCCCeEEEcCCCchhHHHHHHHHHHhhcCCCeEEEEEcChhHHHHHHHHHHHHHhcCCceeEEEEEEEEeecceeecccC
Q 042002 16 INENEIRITTQGRMRNYITYATTLLQEKGSNEISLKAMGRAINKTVMIAELIKRRIVGLHQNTAIGSTDITDMWEPLEEG 95 (143)
Q Consensus 16 ~~~n~I~V~~~~~i~~yv~~a~~lL~~~~~~~Vvi~g~G~AI~kAV~vAEilKrr~~gL~q~~~i~~v~i~d~~~p~~eg 95 (143)
.++|.|+|+++ ++.+||.+|+.+|++ |.++|+|+|+|+||+|||++||+||+||.+.+|..++. +..+ +
T Consensus 4 ~~~~iv~vg~k-pv~nYV~~~~~~ln~-g~~eV~ikA~G~aIskAVdvaeilk~R~~~~~~i~~i~---i~se-----~- 72 (89)
T 2bky_X 4 KLNEIVVRKTK-NVEDHVLDVIVLFNQ-GIDEVILKGTGREISKAVDVYNSLKDRLGDGVQLVNVQ---TGSE-----V- 72 (89)
T ss_dssp CCEEEECCTTS-CHHHHHHHHHHHHHT-TCCEEEEEEETTHHHHHHHHHHHHHHHHGGGEEEEEEE---EEEE-----E-
T ss_pred CCCCEEEECCC-CHHHHHHHHHHHHhC-CCCEEEEEEechHHHHHHHHHHHHHHhccCceEEEEEE---eccc-----c-
Confidence 45788888888 577999999999995 89999999999999999999999999998776654433 3322 1
Q ss_pred CccceeeeeeeEEEEEEecC
Q 042002 96 LLPLETTRHVSVITVTLSKK 115 (143)
Q Consensus 96 ~~~~~~~R~vs~I~I~Lsk~ 115 (143)
...|+||+|+|+|++.
T Consensus 73 ----~~~r~VS~IeI~L~k~ 88 (89)
T 2bky_X 73 ----RDRRRISYILLRLKRV 88 (89)
T ss_dssp ----ETTEEEEEEEEEEEEC
T ss_pred ----CcceEeeeEEEEEEec
Confidence 2689999999999974
No 7
>1vm0_A Unknown protein; structural genomics, protein structure initiative, CESG, AT2 unknown function, nitrate; 1.80A {Arabidopsis thaliana} SCOP: d.68.6.2 PDB: 2q3v_A
Probab=99.80 E-value=2.4e-19 Score=130.72 Aligned_cols=91 Identities=25% Similarity=0.398 Sum_probs=71.7
Q ss_pred CCCCCeEEEcC-CCchhHHHHHHHHHHhhcCCCeEEEEEcChhHHHHHHHHHHHHHhcCCceeEEEEEEEEeecceeecc
Q 042002 15 PINENEIRITT-QGRMRNYITYATTLLQEKGSNEISLKAMGRAINKTVMIAELIKRRIVGLHQNTAIGSTDITDMWEPLE 93 (143)
Q Consensus 15 ~~~~n~I~V~~-~~~i~~yv~~a~~lL~~~~~~~Vvi~g~G~AI~kAV~vAEilKrr~~gL~q~~~i~~v~i~d~~~p~~ 93 (143)
..++|+|+|+. +.++.+||.+|+.+|+ ++++|+|+|+|+||++||+|||+||+|+-..++.+.+++.++.++ .
T Consensus 17 ~~~~N~I~Vs~~kkP~~nYV~~a~~~l~--g~~eV~LkA~G~AIskAV~VAEiLkrr~l~~ikkI~t~t~~i~~~----~ 90 (130)
T 1vm0_A 17 SQKKNRIQVSNTKKPLFFYVNLAKRYMQ--QYNDVELSALGMAIATVVTVTEILKNNGFAVEKKIMTSIVDIKDD----A 90 (130)
T ss_dssp --CTTEEECCCTTSCHHHHHHHHHHHHH--HHSEEEEEEEGGGHHHHHHHHHHHHHTTSEEEEEEEEEEEEEC-------
T ss_pred CCCCCEEEEecCCCCceeHHHHHHHHHc--CCCEEEEEechHHHHHHHHHHHHHHhcCcceEEEEEeeeEEeccC----C
Confidence 45689999996 3556699999999998 689999999999999999999999999755566677777776543 1
Q ss_pred cCCccceeeeeeeEEEEEEecCC
Q 042002 94 EGLLPLETTRHVSVITVTLSKKE 116 (143)
Q Consensus 94 eg~~~~~~~R~vs~I~I~Lsk~~ 116 (143)
.| +..++|.|+|.|.+.+
T Consensus 91 ~~-----r~v~~skIEI~L~k~~ 108 (130)
T 1vm0_A 91 RG-----RPVQKAKIEITLVKSE 108 (130)
T ss_dssp --------CEEEEEEEEEEEECT
T ss_pred CC-----cccccceEEEEEEecC
Confidence 12 4556799999999874
No 8
>3iab_B Ribonucleases P/MRP protein subunit POP7; RNAse P, ribonuclease P, ribonuclease MRP, POP6, POP6P, POP7, POP7P, NME1, yeast, tRNA; 2.70A {Saccharomyces cerevisiae}
Probab=99.79 E-value=2.9e-18 Score=126.14 Aligned_cols=95 Identities=14% Similarity=0.166 Sum_probs=81.7
Q ss_pred CCeEEEcCCCchhHHHHHHHHHHhh---cCCCeEEEEEcChhHHHHHHHHHHHHHhcCCceeEEEEEEEEeecceeeccc
Q 042002 18 ENEIRITTQGRMRNYITYATTLLQE---KGSNEISLKAMGRAINKTVMIAELIKRRIVGLHQNTAIGSTDITDMWEPLEE 94 (143)
Q Consensus 18 ~n~I~V~~~~~i~~yv~~a~~lL~~---~~~~~Vvi~g~G~AI~kAV~vAEilKrr~~gL~q~~~i~~v~i~d~~~p~~e 94 (143)
+|.|||++++.|.+.+.+|.++|+. .+.++|+|+|||+||.||+++|..++++. ++.-.+.++++.+.|+++|.++
T Consensus 30 ~~~iYV~skTpf~S~vkRi~KlL~~~~k~~~~eV~v~GmGkAIeKal~lAl~fq~~~-~~~V~V~T~TV~vvDd~~~~~~ 108 (140)
T 3iab_B 30 HTTIFVKSTTPYVSALKRINKFLDSVHKQGSSYVAVLGMGKAVEKTLALGCHFQDQK-NKKIEVYTKTIEVLDEVITEGQ 108 (140)
T ss_dssp TTEEECCSSCCHHHHHHHHHHHHHHHHHHTCSEEEEEEEGGGHHHHHHHHHHHHHTT-CCCEEEEEEEEEEEEECC----
T ss_pred CceEEEecCCchHHHHHHHHHHHHHhhcCCCcEEEEEechHHHHHHHHHHHHHhhcC-CEEEEEEeceEEEEEeeeecCC
Confidence 8999999999999999999999985 26899999999999999999999999974 6888899999999999999766
Q ss_pred C------------CccceeeeeeeEEEEEEe
Q 042002 95 G------------LLPLETTRHVSVITVTLS 113 (143)
Q Consensus 95 g------------~~~~~~~R~vs~I~I~Ls 113 (143)
. .+...+.|+||+|||+++
T Consensus 109 ~~~~~d~~~~d~d~e~~~rkR~vS~VeirIy 139 (140)
T 3iab_B 109 ADIDMESDVEDDDKETQLKKRAVSGVELRIY 139 (140)
T ss_dssp ----------------CEEEEEEEEEEEEEE
T ss_pred cccccccccccccccchheeeeeeeEEEEEe
Confidence 4 467899999999999986
No 9
>3iab_A Ribonucleases P/MRP protein subunit POP6; RNAse P, ribonuclease P, ribonuclease MRP, POP6, POP6P, POP7, POP7P, NME1, yeast, tRNA; 2.70A {Saccharomyces cerevisiae}
Probab=98.49 E-value=2.9e-06 Score=63.11 Aligned_cols=98 Identities=18% Similarity=0.244 Sum_probs=73.1
Q ss_pred EEEcCCCchhHHHHHHHHHHhh-----cCCCeEEEEEcChhHHHHHHHHHHHHHhc----CCceeEEEEEEEEeecceee
Q 042002 21 IRITTQGRMRNYITYATTLLQE-----KGSNEISLKAMGRAINKTVMIAELIKRRI----VGLHQNTAIGSTDITDMWEP 91 (143)
Q Consensus 21 I~V~~~~~i~~yv~~a~~lL~~-----~~~~~Vvi~g~G~AI~kAV~vAEilKrr~----~gL~q~~~i~~v~i~d~~~p 91 (143)
+.|+++..++..|+.-.++|.. ++.+.|.+.|.|..|.|++++.||+|.++ .+|||++++.......
T Consensus 47 ~kIsKNDnIK~~V~kL~~~l~~~~~s~~~~~~V~l~syg~hIQKmLSIvEI~Kk~~~~~~~~l~Q~NkL~~f~~v~---- 122 (158)
T 3iab_A 47 HGISKNDNIKKSVNKLDKQINMADRSLGLQQVVCIFSYGPHIQKMLSILEIFKKGYIKNNKKIYQWNKLTSFDIKR---- 122 (158)
T ss_dssp EECCTTCCHHHHHHHHHHHHTCSCTTTTCEEEEEEEEEGGGHHHHHHHHHHHHHHHHTTTCCCEEEEEEEEEEEC-----
T ss_pred EEeccCchHHHHHHHHHHHHhhhccccccCceEEEEecChHHHHHHHHHHHHHHHhhcCCccHHHHhhhhhhccCC----
Confidence 4499999999999998888851 25688999999999999999999999987 3599999999875432
Q ss_pred cccCCcc-ceeeeeeeEEEEEEecCC-CCCCCCCC
Q 042002 92 LEEGLLP-LETTRHVSVITVTLSKKE-LDTSSTGY 124 (143)
Q Consensus 92 ~~eg~~~-~~~~R~vs~I~I~Lsk~~-ld~~~~Gy 124 (143)
+|.++ +.++-+||-+-+.+++.+ .|-+-.||
T Consensus 123 --~grNELle~r~~vPILi~~i~~~~~~~l~~~~~ 155 (158)
T 3iab_A 123 --EGRNELQEERLKVPILVTMVSDSEIIDLNLHSF 155 (158)
T ss_dssp --------CCCCEEEEEEEEEEESSSSCCSCCTTS
T ss_pred --ccccHHHHhhcCCCEEEEEEecccccccccccc
Confidence 34433 345668888877788763 44444443
No 10
>2ek0_A Stage V sporulation protein S (spovs) related Pro; structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus} PDB: 2eh1_A
Probab=56.67 E-value=41 Score=22.40 Aligned_cols=65 Identities=17% Similarity=0.313 Sum_probs=42.3
Q ss_pred CeEEEcCCCchhHHHHHHHHHHhhcCCCeEEEEEcC-hhHHHHHHHHHHHHHhc--CCceeEEEEEEEEe
Q 042002 19 NEIRITTQGRMRNYITYATTLLQEKGSNEISLKAMG-RAINKTVMIAELIKRRI--VGLHQNTAIGSTDI 85 (143)
Q Consensus 19 n~I~V~~~~~i~~yv~~a~~lL~~~~~~~Vvi~g~G-~AI~kAV~vAEilKrr~--~gL~q~~~i~~v~i 85 (143)
+.+.|+.+++-...-..--..+.+ ...+.|.+.| .|++.||.-.-|-+.-+ .|+.-...=+++++
T Consensus 2 e~LKVSs~S~P~~VAGAIA~~lRe--~~~veiqAIGa~AvNqAVKAIAIARg~l~~~g~Dl~~~PaF~~v 69 (90)
T 2ek0_A 2 ETLRVSSKSRPNSVAGAIAAMLRT--KGEVEVQAIGPQAVNQAVKAIAIARGYIAPDNLDLVVKPAFVKL 69 (90)
T ss_dssp CEEEECTTCCHHHHHHHHHHHHHH--HSEEEEEECSHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEE
T ss_pred ceEEEcCCCChHHHHHHHHHHHhc--CCceEEEEECHHHHHHHHHHHHHHHHhhcccCceEEEeeeeEEE
Confidence 468899999886666666666765 4599999999 68888877554444433 35533333333343
No 11
>2k9u_B Filamin-binding LIM protein 1; cytoskeletal complex, alternative splicing, cell adhesion, cell junction, cell shape, cytoplasm, cytoskeleton; NMR {Homo sapiens}
Probab=41.72 E-value=12 Score=19.27 Aligned_cols=14 Identities=29% Similarity=0.358 Sum_probs=12.1
Q ss_pred eeeeeeEEEEEEec
Q 042002 101 TTRHVSVITVTLSK 114 (143)
Q Consensus 101 ~~R~vs~I~I~Lsk 114 (143)
.+|..|+|.|+|..
T Consensus 6 eKR~aSSvFITLap 19 (26)
T 2k9u_B 6 EKRVASSVFITLAP 19 (26)
T ss_dssp SSSCEEEEEEEECC
T ss_pred hhheeeeEEEEecC
Confidence 47899999999974
No 12
>2crq_A Mitochondrial translational initiation factor 3; ribosome, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=30.91 E-value=98 Score=21.10 Aligned_cols=58 Identities=10% Similarity=0.121 Sum_probs=39.0
Q ss_pred CCCCeEEEcCCCchhHH---HHHHHHHHhhcCCCeEEEEEcChhHH----HHHHHHHHHHHhcCCc
Q 042002 16 INENEIRITTQGRMRNY---ITYATTLLQEKGSNEISLKAMGRAIN----KTVMIAELIKRRIVGL 74 (143)
Q Consensus 16 ~~~n~I~V~~~~~i~~y---v~~a~~lL~~~~~~~Vvi~g~G~AI~----kAV~vAEilKrr~~gL 74 (143)
..-.+|+++-+..-.+| +..|..+|+++..=.|+|+ +|+.+. .+..+-+.+...+.++
T Consensus 13 ~~vKEIrl~p~Id~HDl~~K~k~a~kFLe~GdKVKvti~-RGRE~~~~~e~g~~lL~r~~~~l~dv 77 (112)
T 2crq_A 13 TMTKELVFSSNIGQHDLDTKSKQIQQWIEKKYHVQVTIK-RRKDAEQSEEETEEIFNQILQTMPDI 77 (112)
T ss_dssp SCEEEEEEETTCCHHHHHHHHHHHHHHHHTTCEEEEEEE-CCTTCSCCHHHHHHHHHHHHTTSTTT
T ss_pred ceeEEEEecCCcccchHHHHHHHHHHHHHCCCEEEEEEE-CCccccccHHHHHHHHHHHHHHhhhh
Confidence 44579999987665555 6778888987556678899 999886 3444444444444443
No 13
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=29.49 E-value=1.2e+02 Score=20.95 Aligned_cols=37 Identities=14% Similarity=0.202 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhhcCCCeEEEEEcChhHHHHHHHHHHHHH
Q 042002 31 NYITYATTLLQEKGSNEISLKAMGRAINKTVMIAELIKR 69 (143)
Q Consensus 31 ~yv~~a~~lL~~~~~~~Vvi~g~G~AI~kAV~vAEilKr 69 (143)
..+..+..+|.+ .+.|.+.|.|..-.-|-..+..|.+
T Consensus 27 ~~l~~~~~~i~~--a~~I~i~G~G~S~~~a~~~~~~l~~ 63 (187)
T 3sho_A 27 EAIEAAVEAICR--ADHVIVVGMGFSAAVAVFLGHGLNS 63 (187)
T ss_dssp HHHHHHHHHHHH--CSEEEEECCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCEEEEEecCchHHHHHHHHHHHHh
Confidence 456777777765 6899999999988877777777765
No 14
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A
Probab=26.14 E-value=1.2e+02 Score=21.00 Aligned_cols=37 Identities=14% Similarity=0.013 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhhcCCCeEEEEEcChhHHHHHHHHHHHHH
Q 042002 31 NYITYATTLLQEKGSNEISLKAMGRAINKTVMIAELIKR 69 (143)
Q Consensus 31 ~yv~~a~~lL~~~~~~~Vvi~g~G~AI~kAV~vAEilKr 69 (143)
..+..+..+|.+ .+.|.+-|.|..-.-|-..+..|.+
T Consensus 25 ~~i~~~~~~i~~--a~~I~i~G~G~S~~~A~~~~~~l~~ 61 (186)
T 1m3s_A 25 EEADQLADHILS--SHQIFTAGAGRSGLMAKSFAMRLMH 61 (186)
T ss_dssp HHHHHHHHHHHH--CSCEEEECSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc--CCeEEEEecCHHHHHHHHHHHHHHh
Confidence 456777777775 6799999999887777777777754
No 15
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=25.23 E-value=86 Score=24.57 Aligned_cols=32 Identities=16% Similarity=0.187 Sum_probs=23.1
Q ss_pred CeEEEEE--cChhHHHHHHHHHHHHHhcCCceeEEEE
Q 042002 46 NEISLKA--MGRAINKTVMIAELIKRRIVGLHQNTAI 80 (143)
Q Consensus 46 ~~Vvi~g--~G~AI~kAV~vAEilKrr~~gL~q~~~i 80 (143)
+.|+|.| +|.-|..|+.+|+-|++| | |++.-+
T Consensus 3 ~~i~i~~GGTgGHi~palala~~L~~~--g-~~V~~v 36 (365)
T 3s2u_A 3 GNVLIMAGGTGGHVFPALACAREFQAR--G-YAVHWL 36 (365)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHHT--T-CEEEEE
T ss_pred CcEEEEcCCCHHHHHHHHHHHHHHHhC--C-CEEEEE
Confidence 4677776 457799999999999988 4 544433
No 16
>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} SCOP: c.80.1.3
Probab=23.79 E-value=1.4e+02 Score=20.55 Aligned_cols=37 Identities=14% Similarity=0.076 Sum_probs=28.1
Q ss_pred HHHHHHHHHHhhcCCCeEEEEEcChhHHHHHHHHHHHHH
Q 042002 31 NYITYATTLLQEKGSNEISLKAMGRAINKTVMIAELIKR 69 (143)
Q Consensus 31 ~yv~~a~~lL~~~~~~~Vvi~g~G~AI~kAV~vAEilKr 69 (143)
..+..+..++.+ .+.|.+-|.|..-.-|-..+..|.+
T Consensus 28 ~~i~~~~~~i~~--a~~I~i~G~G~S~~~A~~~~~~l~~ 64 (180)
T 1jeo_A 28 NKLDSLIDRIIK--AKKIFIFGVGRSGYIGRCFAMRLMH 64 (180)
T ss_dssp HHHHHHHHHHHH--CSSEEEECCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCEEEEEeecHHHHHHHHHHHHHHH
Confidence 346677777765 6799999999888877777777764
No 17
>3eua_A Putative fructose-aminoacid-6-phosphate deglycase; putative phosphosugar isomerase, structural genomics, joint for structural genomics, JCSG; HET: MSE FLC; 1.90A {Bacillus subtilis}
Probab=23.62 E-value=2.2e+02 Score=22.09 Aligned_cols=46 Identities=11% Similarity=0.032 Sum_probs=34.2
Q ss_pred hhHHHHHHHHHHhhcCCCeEEEEEcChhHHHHHHHHHHHHHhcCCc
Q 042002 29 MRNYITYATTLLQEKGSNEISLKAMGRAINKTVMIAELIKRRIVGL 74 (143)
Q Consensus 29 i~~yv~~a~~lL~~~~~~~Vvi~g~G~AI~kAV~vAEilKrr~~gL 74 (143)
.+..+..+..++.+.+.+.|.|.|.|.+-.-|...+-.+.+...|+
T Consensus 9 ~~~~i~~~v~~i~~~~~~~I~i~G~GtS~~aa~~~~~~l~~~~~g~ 54 (329)
T 3eua_A 9 VNREVQAFLQDLKGKTIDHVFFVACGGSSAIMYPSKYVFDRESKSI 54 (329)
T ss_dssp SCHHHHHHHHHHTTCCCCEEEEEECTHHHHTTHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEEccHHHHHHHHHHHHHHHhcCCC
Confidence 4567888999998657899999999998776666666665543354
No 18
>1qys_A TOP7; alpha-beta, novel fold, de novo protein; 2.50A {Computationally designed sequence} SCOP: k.41.1.1
Probab=21.83 E-value=1.7e+02 Score=19.05 Aligned_cols=53 Identities=9% Similarity=0.281 Sum_probs=44.3
Q ss_pred eEEEcCCCchhHHHHHHHHHHhhcCCCeEEEEEcChhHHHHHHHHHHHHHhcC
Q 042002 20 EIRITTQGRMRNYITYATTLLQEKGSNEISLKAMGRAINKTVMIAELIKRRIV 72 (143)
Q Consensus 20 ~I~V~~~~~i~~yv~~a~~lL~~~~~~~Vvi~g~G~AI~kAV~vAEilKrr~~ 72 (143)
.-.|+..+.+...++..+..+.+.|.+.|.|+-..+.-..|-..|-||-.-|.
T Consensus 20 tytvtteselqkvlnelmdyikkqgakrvrisitartkkeaekfaailikvfa 72 (106)
T 1qys_A 20 TYTVTTESELQKVLNELMDYIKKQGAKRVRISITARTKKEAEKFAAILIKVFA 72 (106)
T ss_dssp EEEESSSSHHHHHHHHHHHHHHHHCCSEEEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred EEEEeeHHHHHHHHHHHHHHHHhcCCcEEEEEEEecchhHHHHHHHHHHHHHH
Confidence 45678888888899999998888899999988888777888888888888774
No 19
>3fxa_A SIS domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.60A {Listeria monocytogenes str}
Probab=21.66 E-value=2e+02 Score=20.15 Aligned_cols=38 Identities=8% Similarity=0.071 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhhcCCCeEEEEEcChhHHHHHHHHHHHHH
Q 042002 31 NYITYATTLLQEKGSNEISLKAMGRAINKTVMIAELIKR 69 (143)
Q Consensus 31 ~yv~~a~~lL~~~~~~~Vvi~g~G~AI~kAV~vAEilKr 69 (143)
..+..+..+|.+ ..+.|.+.|.|.+-.-|-..+..|.+
T Consensus 32 ~~i~~~~~~i~~-a~~~I~i~G~G~S~~~A~~~~~~l~~ 69 (201)
T 3fxa_A 32 EALVKTVEKIAE-CTGKIVVAGCGTSGVAAKKLVHSFNC 69 (201)
T ss_dssp HHHHHHHHHHHH-CSSCEEEECCTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-cCCcEEEEEecHHHHHHHHHHHHHHh
Confidence 456777777775 22599999999987777777777765
No 20
>3lso_A Putative membrane anchored protein; MCSG, PSI-2, structural genomic protein structure initiative; HET: MLZ; 2.75A {Corynebacterium diphtheriae} PDB: 3lso_B*
Probab=20.75 E-value=90 Score=26.38 Aligned_cols=24 Identities=25% Similarity=0.389 Sum_probs=20.2
Q ss_pred eeeeeeEEEEEEecC-CCCCCCCCC
Q 042002 101 TTRHVSVITVTLSKK-ELDTSSTGY 124 (143)
Q Consensus 101 ~~R~vs~I~I~Lsk~-~ld~~~~Gy 124 (143)
.+-..|+|.|.+-++ .||.++||.
T Consensus 87 a~l~kS~I~InVG~NVqLdg~QpG~ 111 (489)
T 3lso_A 87 AKLTKSSIRINVGKNVKLDGNQPGL 111 (489)
T ss_dssp EEEEEEEEEEECCSSEEESSCCTTE
T ss_pred eeeeeeeEEEeeccceEecCCCCCc
Confidence 455678999999887 799999996
Done!