Query 042003
Match_columns 248
No_of_seqs 130 out of 1342
Neff 10.6
Searched_HMMs 29240
Date Mon Mar 25 22:31:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042003.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042003hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2db3_A ATP-dependent RNA helic 100.0 1.2E-42 4.1E-47 291.2 20.8 244 1-248 141-388 (434)
2 2j0s_A ATP-dependent RNA helic 100.0 6.7E-41 2.3E-45 279.0 17.0 245 1-248 117-364 (410)
3 2i4i_A ATP-dependent RNA helic 100.0 4.8E-40 1.6E-44 274.4 19.6 245 1-248 113-364 (417)
4 3eiq_A Eukaryotic initiation f 100.0 2.8E-40 9.5E-45 275.5 17.4 246 1-248 120-368 (414)
5 3fht_A ATP-dependent RNA helic 100.0 1.9E-39 6.5E-44 270.2 19.5 247 1-248 107-360 (412)
6 3pey_A ATP-dependent RNA helic 100.0 6E-39 2.1E-43 265.6 19.7 245 1-248 87-337 (395)
7 1xti_A Probable ATP-dependent 100.0 7.3E-39 2.5E-43 265.0 19.6 246 1-248 88-338 (391)
8 1s2m_A Putative ATP-dependent 100.0 3E-38 1E-42 262.2 18.4 243 1-248 101-346 (400)
9 3fmp_B ATP-dependent RNA helic 100.0 2.9E-39 1E-43 274.2 9.2 247 1-248 174-427 (479)
10 1fuu_A Yeast initiation factor 100.0 1.8E-39 6.2E-44 268.9 7.1 245 1-248 101-347 (394)
11 1hv8_A Putative ATP-dependent 100.0 4.7E-37 1.6E-41 251.9 19.2 239 1-248 86-326 (367)
12 3fho_A ATP-dependent RNA helic 100.0 2E-37 6.7E-42 264.3 12.7 245 1-248 201-451 (508)
13 3sqw_A ATP-dependent RNA helic 100.0 5.1E-37 1.7E-41 265.8 15.4 247 1-248 107-379 (579)
14 3i5x_A ATP-dependent RNA helic 100.0 1.1E-36 3.7E-41 263.2 16.7 247 1-248 158-430 (563)
15 2z0m_A 337AA long hypothetical 100.0 4.9E-36 1.7E-40 243.3 17.9 235 1-248 68-304 (337)
16 2v1x_A ATP-dependent DNA helic 100.0 4.4E-35 1.5E-39 252.6 18.6 241 1-248 96-355 (591)
17 1oyw_A RECQ helicase, ATP-depe 100.0 1.8E-34 6E-39 246.3 15.9 235 1-248 77-324 (523)
18 4a2p_A RIG-I, retinoic acid in 100.0 1.5E-34 5E-39 249.4 8.6 247 1-248 67-491 (556)
19 3tbk_A RIG-I helicase domain; 100.0 4E-33 1.4E-37 240.3 17.2 245 1-248 64-490 (555)
20 2ykg_A Probable ATP-dependent 100.0 4.1E-34 1.4E-38 252.8 9.0 247 1-248 73-499 (696)
21 3oiy_A Reverse gyrase helicase 100.0 6.9E-34 2.4E-38 237.1 7.5 229 1-248 76-342 (414)
22 3l9o_A ATP-dependent RNA helic 100.0 2.4E-32 8.3E-37 249.2 17.0 235 1-248 239-576 (1108)
23 2zj8_A DNA helicase, putative 100.0 1.5E-32 5.2E-37 243.2 13.2 236 1-248 80-366 (720)
24 4a2q_A RIG-I, retinoic acid in 100.0 1.7E-32 5.7E-37 245.2 13.3 247 1-248 308-732 (797)
25 1wp9_A ATP-dependent RNA helic 100.0 2.5E-32 8.6E-37 231.4 13.5 245 1-248 64-457 (494)
26 2va8_A SSO2462, SKI2-type heli 100.0 8.3E-32 2.8E-36 238.5 16.7 235 1-248 87-387 (715)
27 2xgj_A ATP-dependent RNA helic 100.0 3.1E-31 1E-35 240.1 20.7 234 1-248 141-478 (1010)
28 2p6r_A Afuhel308 helicase; pro 100.0 3E-32 1E-36 240.7 12.3 237 1-248 80-367 (702)
29 4a2w_A RIG-I, retinoic acid in 100.0 7.8E-32 2.7E-36 243.6 13.9 247 1-248 308-732 (936)
30 4gl2_A Interferon-induced heli 100.0 4E-32 1.4E-36 240.2 9.3 89 160-248 400-502 (699)
31 4a4z_A Antiviral helicase SKI2 100.0 4.5E-30 1.5E-34 232.4 18.8 235 1-248 94-471 (997)
32 4ddu_A Reverse gyrase; topoiso 100.0 1.5E-31 5E-36 244.0 7.8 219 1-239 133-388 (1104)
33 1gku_B Reverse gyrase, TOP-RG; 100.0 2.7E-31 9.2E-36 242.1 4.7 218 1-238 111-352 (1054)
34 2oca_A DAR protein, ATP-depend 100.0 3.4E-30 1.2E-34 220.2 9.0 237 1-248 169-436 (510)
35 2eyq_A TRCF, transcription-rep 100.0 5E-29 1.7E-33 228.6 15.0 230 1-248 664-903 (1151)
36 1tf5_A Preprotein translocase 100.0 7.4E-29 2.5E-33 215.9 13.6 244 1-248 136-526 (844)
37 4f92_B U5 small nuclear ribonu 100.0 4.5E-29 1.5E-33 235.0 13.1 243 1-248 146-452 (1724)
38 1gm5_A RECG; helicase, replica 100.0 1.2E-29 4.1E-34 223.6 8.7 229 1-248 429-678 (780)
39 4f92_B U5 small nuclear ribonu 100.0 1.4E-28 4.8E-33 231.7 14.5 244 1-248 984-1287(1724)
40 2xau_A PRE-mRNA-splicing facto 100.0 4.9E-29 1.7E-33 220.6 8.2 208 32-248 180-425 (773)
41 2fsf_A Preprotein translocase 99.9 1.4E-27 4.8E-32 207.5 12.5 245 1-248 127-564 (853)
42 2fwr_A DNA repair protein RAD2 99.9 1E-28 3.4E-33 209.2 2.5 223 1-248 145-432 (472)
43 2jlq_A Serine protease subunit 99.9 5.9E-28 2E-32 202.9 5.9 187 35-248 85-291 (451)
44 3h1t_A Type I site-specific re 99.9 3.9E-27 1.3E-31 204.5 8.5 210 34-248 271-537 (590)
45 1nkt_A Preprotein translocase 99.9 3.4E-26 1.1E-30 199.3 14.2 244 1-248 164-598 (922)
46 3dmq_A RNA polymerase-associat 99.9 1.4E-26 4.6E-31 209.9 11.7 104 145-248 488-594 (968)
47 3o8b_A HCV NS3 protease/helica 99.9 4.6E-27 1.6E-31 202.4 8.0 207 1-248 269-497 (666)
48 2v6i_A RNA helicase; membrane, 99.9 5.5E-27 1.9E-31 195.8 7.6 185 37-248 70-271 (431)
49 1z63_A Helicase of the SNF2/RA 99.9 3E-25 1E-29 189.1 17.7 234 1-248 97-432 (500)
50 2whx_A Serine protease/ntpase/ 99.9 6.7E-27 2.3E-31 202.4 6.0 187 35-248 252-458 (618)
51 1fuk_A Eukaryotic initiation f 99.9 8.9E-25 3E-29 159.4 14.4 117 132-248 2-118 (165)
52 2p6n_A ATP-dependent RNA helic 99.9 1.3E-25 4.6E-30 167.2 10.1 134 113-248 9-142 (191)
53 1yks_A Genome polyprotein [con 99.9 3.6E-28 1.2E-32 203.4 -4.2 181 42-248 72-279 (440)
54 3rc3_A ATP-dependent RNA helic 99.9 2.6E-25 8.9E-30 193.4 12.2 216 1-248 191-423 (677)
55 2hjv_A ATP-dependent RNA helic 99.9 6.5E-25 2.2E-29 159.8 12.4 119 129-248 5-123 (163)
56 2rb4_A ATP-dependent RNA helic 99.9 5.9E-25 2E-29 161.9 11.6 119 130-248 4-128 (175)
57 1t5i_A C_terminal domain of A 99.9 6.1E-25 2.1E-29 161.2 11.0 117 131-248 3-119 (172)
58 2wv9_A Flavivirin protease NS2 99.9 1E-25 3.5E-30 196.3 7.4 181 41-248 313-513 (673)
59 2z83_A Helicase/nucleoside tri 99.9 1.6E-25 5.5E-30 188.4 4.7 185 37-248 89-293 (459)
60 2jgn_A DBX, DDX3, ATP-dependen 99.9 4E-24 1.4E-28 158.6 9.6 120 128-248 14-134 (185)
61 3mwy_W Chromo domain-containin 99.9 9E-23 3.1E-27 182.3 17.1 103 146-248 556-663 (800)
62 3eaq_A Heat resistant RNA depe 99.9 2.3E-23 7.8E-28 157.9 10.2 107 142-248 13-119 (212)
63 2yjt_D ATP-dependent RNA helic 99.8 7.4E-25 2.5E-29 160.6 0.0 116 133-248 3-118 (170)
64 1z3i_X Similar to RAD54-like; 99.9 1.4E-22 4.9E-27 176.9 13.5 102 147-248 400-507 (644)
65 3i32_A Heat resistant RNA depe 99.9 1.1E-22 3.7E-27 161.2 11.5 114 134-248 3-116 (300)
66 2d7d_A Uvrabc system protein B 99.9 8.5E-23 2.9E-27 178.3 11.2 190 43-248 320-538 (661)
67 1c4o_A DNA nucleotide excision 99.9 1.9E-22 6.4E-27 176.3 11.1 190 43-248 314-532 (664)
68 3jux_A Protein translocase sub 99.9 2.5E-21 8.5E-26 165.8 13.8 149 95-248 410-568 (822)
69 2w00_A HSDR, R.ECOR124I; ATP-b 99.8 1.7E-20 5.7E-25 169.7 10.8 234 1-248 342-686 (1038)
70 1z5z_A Helicase of the SNF2/RA 99.8 1.4E-18 4.9E-23 135.9 11.1 106 143-248 93-203 (271)
71 3fe2_A Probable ATP-dependent 99.8 3.3E-19 1.1E-23 137.9 7.1 124 1-127 114-240 (242)
72 1wrb_A DJVLGB; RNA helicase, D 99.8 1.2E-18 4.2E-23 135.5 9.7 135 1-137 112-252 (253)
73 3fmo_B ATP-dependent RNA helic 99.7 5.1E-18 1.7E-22 135.1 9.1 125 1-126 174-299 (300)
74 1q0u_A Bstdead; DEAD protein, 99.7 9.7E-18 3.3E-22 127.7 10.3 123 1-126 84-213 (219)
75 3iuy_A Probable ATP-dependent 99.7 5.5E-18 1.9E-22 129.8 8.5 119 1-123 106-227 (228)
76 3dkp_A Probable ATP-dependent 99.7 1.1E-17 3.7E-22 129.6 9.5 126 1-127 110-243 (245)
77 1vec_A ATP-dependent RNA helic 99.7 1.3E-17 4.3E-22 125.8 9.6 120 1-122 83-205 (206)
78 3bor_A Human initiation factor 99.7 1.2E-17 4.1E-22 128.7 8.8 122 1-125 110-235 (237)
79 3ber_A Probable ATP-dependent 99.7 8.5E-18 2.9E-22 130.4 7.7 121 1-124 123-247 (249)
80 2oxc_A Probable ATP-dependent 99.7 1.1E-17 3.7E-22 128.3 7.5 122 1-123 104-227 (230)
81 1qde_A EIF4A, translation init 99.7 1.9E-17 6.6E-22 126.4 8.7 123 1-126 94-218 (224)
82 3ly5_A ATP-dependent RNA helic 99.7 1.2E-17 4.1E-22 130.5 6.5 117 1-120 138-258 (262)
83 2pl3_A Probable ATP-dependent 99.7 3.5E-17 1.2E-21 125.9 7.9 122 1-125 109-233 (236)
84 1t6n_A Probable ATP-dependent 99.7 3.2E-17 1.1E-21 124.8 7.3 122 1-123 94-219 (220)
85 2gxq_A Heat resistant RNA depe 99.7 4.7E-17 1.6E-21 122.7 7.8 119 1-124 84-205 (207)
86 2ipc_A Preprotein translocase 99.6 9.2E-14 3.1E-18 121.7 15.8 73 1-74 132-215 (997)
87 2vl7_A XPD; helicase, unknown 99.2 8E-12 2.7E-16 107.1 6.7 84 149-239 374-463 (540)
88 3b6e_A Interferon-induced heli 99.2 4.4E-12 1.5E-16 95.8 1.8 101 1-103 94-216 (216)
89 3llm_A ATP-dependent RNA helic 99.2 1.2E-11 4.1E-16 94.9 4.2 76 36-119 154-231 (235)
90 1rif_A DAR protein, DNA helica 99.1 3.5E-11 1.2E-15 94.8 5.4 99 1-109 169-267 (282)
91 3crv_A XPD/RAD3 related DNA he 99.1 2.9E-09 9.9E-14 91.5 17.1 136 95-240 316-474 (551)
92 4a15_A XPD helicase, ATP-depen 98.6 3.1E-07 1.1E-11 79.8 11.8 137 95-240 376-528 (620)
93 2fz4_A DNA repair protein RAD2 98.6 4.6E-08 1.6E-12 74.9 5.5 86 1-106 145-230 (237)
94 3hgt_A HDA1 complex subunit 3; 97.6 0.00036 1.2E-08 55.1 9.6 95 144-243 107-208 (328)
95 1gm5_A RECG; helicase, replica 96.9 0.0026 9E-08 56.7 8.1 75 160-234 417-496 (780)
96 3oiy_A Reverse gyrase helicase 96.4 0.009 3.1E-07 49.1 7.3 75 159-233 63-144 (414)
97 4ddu_A Reverse gyrase; topoiso 95.5 0.032 1.1E-06 51.8 7.5 75 160-234 121-202 (1104)
98 2eyq_A TRCF, transcription-rep 95.5 0.032 1.1E-06 52.1 7.4 74 160-233 652-730 (1151)
99 3ber_A Probable ATP-dependent 95.1 0.21 7E-06 37.9 9.9 71 160-234 111-192 (249)
100 1t6n_A Probable ATP-dependent 95.0 0.16 5.5E-06 37.5 8.9 72 160-234 82-164 (220)
101 2oxc_A Probable ATP-dependent 94.6 0.13 4.3E-06 38.5 7.3 69 160-233 92-171 (230)
102 1oyw_A RECQ helicase, ATP-depe 94.5 0.083 2.9E-06 44.9 6.8 59 160-218 65-123 (523)
103 2v1x_A ATP-dependent DNA helic 94.2 0.085 2.9E-06 45.6 6.3 59 160-218 84-144 (591)
104 3fe2_A Probable ATP-dependent 94.0 0.28 9.7E-06 36.9 8.2 70 160-233 102-181 (242)
105 1vec_A ATP-dependent RNA helic 93.7 0.37 1.3E-05 35.0 8.3 70 160-233 71-151 (206)
106 3bor_A Human initiation factor 93.4 0.24 8.1E-06 37.2 6.9 71 160-233 98-178 (237)
107 2pl3_A Probable ATP-dependent 93.0 0.28 9.5E-06 36.7 6.8 69 160-233 97-176 (236)
108 2gxq_A Heat resistant RNA depe 93.0 0.44 1.5E-05 34.6 7.6 71 160-234 72-150 (207)
109 3iuy_A Probable ATP-dependent 92.8 0.34 1.2E-05 35.9 7.0 71 160-234 94-173 (228)
110 1qde_A EIF4A, translation init 92.8 0.22 7.5E-06 36.9 5.8 69 160-233 82-160 (224)
111 3ly5_A ATP-dependent RNA helic 92.6 0.63 2.1E-05 35.5 8.3 71 160-234 126-207 (262)
112 1xti_A Probable ATP-dependent 92.5 0.66 2.3E-05 37.3 8.8 71 160-233 76-157 (391)
113 1wrb_A DJVLGB; RNA helicase, D 91.5 0.74 2.5E-05 34.7 7.5 70 160-233 100-179 (253)
114 2l82_A Designed protein OR32; 89.3 2.6 9E-05 27.0 7.3 43 164-206 6-48 (162)
115 1fuu_A Yeast initiation factor 89.2 2.1 7.1E-05 34.3 8.8 69 160-233 89-167 (394)
116 3gk5_A Uncharacterized rhodane 89.0 0.3 1E-05 31.7 3.0 36 160-195 55-90 (108)
117 1gku_B Reverse gyrase, TOP-RG; 88.9 0.61 2.1E-05 43.3 5.8 72 160-233 99-180 (1054)
118 2i4i_A ATP-dependent RNA helic 88.8 2.3 8E-05 34.4 8.9 69 161-233 102-180 (417)
119 2db3_A ATP-dependent RNA helic 88.7 2.1 7.2E-05 35.2 8.5 70 160-233 129-208 (434)
120 1wp9_A ATP-dependent RNA helic 88.7 2.9 9.9E-05 34.3 9.5 70 159-233 51-130 (494)
121 1s2m_A Putative ATP-dependent 88.6 2 6.9E-05 34.6 8.3 70 160-233 89-168 (400)
122 3fmo_B ATP-dependent RNA helic 88.3 0.5 1.7E-05 36.9 4.3 68 160-234 162-241 (300)
123 1hv8_A Putative ATP-dependent 88.1 3.8 0.00013 32.3 9.5 71 158-233 72-152 (367)
124 3foj_A Uncharacterized protein 88.0 0.33 1.1E-05 31.0 2.6 36 160-195 56-91 (100)
125 1wv9_A Rhodanese homolog TT165 87.7 0.39 1.3E-05 30.2 2.8 35 161-195 54-88 (94)
126 2j0s_A ATP-dependent RNA helic 87.4 2.5 8.7E-05 34.1 8.2 70 160-233 105-184 (410)
127 3tbk_A RIG-I helicase domain; 87.2 0.94 3.2E-05 38.3 5.7 70 160-233 52-132 (555)
128 3eme_A Rhodanese-like domain p 87.1 0.32 1.1E-05 31.2 2.1 36 160-195 56-91 (103)
129 4a2q_A RIG-I, retinoic acid in 87.0 1.6 5.4E-05 39.1 7.2 70 160-233 296-376 (797)
130 1q0u_A Bstdead; DEAD protein, 86.8 0.5 1.7E-05 34.8 3.4 70 160-233 72-155 (219)
131 4a2p_A RIG-I, retinoic acid in 86.8 1.2 4.1E-05 37.7 6.1 71 160-234 55-136 (556)
132 3dkp_A Probable ATP-dependent 86.7 0.6 2E-05 35.0 3.8 72 160-234 98-181 (245)
133 1tf5_A Preprotein translocase 85.7 2.5 8.4E-05 38.0 7.5 72 156-233 120-208 (844)
134 2fsf_A Preprotein translocase 85.5 2.2 7.6E-05 38.2 7.1 70 158-233 113-199 (853)
135 3hix_A ALR3790 protein; rhodan 84.7 0.62 2.1E-05 30.0 2.6 36 160-195 52-88 (106)
136 3eiq_A Eukaryotic initiation f 84.3 4.6 0.00016 32.6 8.3 72 159-233 107-188 (414)
137 2jtq_A Phage shock protein E; 84.2 2.9 9.8E-05 25.4 5.5 35 160-195 41-76 (85)
138 3iwh_A Rhodanese-like domain p 84.2 0.55 1.9E-05 30.2 2.1 35 160-194 56-90 (103)
139 1nkt_A Preprotein translocase 84.1 3.4 0.00011 37.4 7.6 73 155-233 147-236 (922)
140 2ipc_A Preprotein translocase 83.5 2.6 8.9E-05 38.2 6.7 59 155-219 115-177 (997)
141 2z0m_A 337AA long hypothetical 83.0 9 0.00031 29.7 9.3 69 160-233 56-134 (337)
142 3nhv_A BH2092 protein; alpha-b 82.5 0.76 2.6E-05 31.5 2.5 36 160-195 72-109 (144)
143 3g5j_A Putative ATP/GTP bindin 82.1 1.4 4.9E-05 29.3 3.8 35 161-195 90-125 (134)
144 2k0z_A Uncharacterized protein 81.9 1.6 5.3E-05 28.3 3.7 36 160-195 56-91 (110)
145 2fsx_A RV0390, COG0607: rhodan 81.8 1.2 4.1E-05 30.6 3.2 36 160-195 80-116 (148)
146 2r2a_A Uncharacterized protein 81.1 1.5 5E-05 32.1 3.6 41 62-103 88-132 (199)
147 3flh_A Uncharacterized protein 80.6 0.49 1.7E-05 31.5 0.9 36 160-195 71-108 (124)
148 2fz4_A DNA repair protein RAD2 80.6 9.1 0.00031 28.5 8.1 64 141-218 115-179 (237)
149 1tq1_A AT5G66040, senescence-a 80.5 0.93 3.2E-05 30.4 2.3 36 160-195 82-118 (129)
150 4a15_A XPD helicase, ATP-depen 80.0 0.4 1.4E-05 41.7 0.3 40 36-75 174-218 (620)
151 1qxn_A SUD, sulfide dehydrogen 79.7 0.89 3.1E-05 30.9 2.0 36 160-195 82-118 (137)
152 3b6e_A Interferon-induced heli 79.5 3 0.0001 30.2 5.0 71 160-234 82-168 (216)
153 1gmx_A GLPE protein; transfera 79.4 0.86 3E-05 29.4 1.8 36 160-195 58-94 (108)
154 2fwr_A DNA repair protein RAD2 79.2 6.1 0.00021 32.7 7.3 65 140-218 114-179 (472)
155 2hhg_A Hypothetical protein RP 77.6 1 3.4E-05 30.5 1.7 36 160-195 86-122 (139)
156 4gl2_A Interferon-induced heli 77.1 0.69 2.4E-05 40.6 1.0 69 161-233 57-141 (699)
157 4a2w_A RIG-I, retinoic acid in 76.9 2.4 8.2E-05 38.8 4.5 70 160-233 296-376 (936)
158 1vp8_A Hypothetical protein AF 76.8 3.4 0.00012 29.8 4.2 76 146-221 30-109 (201)
159 2ykg_A Probable ATP-dependent 76.4 3.3 0.00011 36.2 5.2 69 161-233 62-141 (696)
160 3ilm_A ALR3790 protein; rhodan 75.7 1.5 5E-05 30.0 2.1 36 160-195 56-92 (141)
161 3d1p_A Putative thiosulfate su 75.5 1.4 4.8E-05 29.8 2.0 36 160-195 91-127 (139)
162 4f67_A UPF0176 protein LPG2838 75.0 4 0.00014 31.2 4.6 49 147-195 168-217 (265)
163 3l9o_A ATP-dependent RNA helic 74.7 2.3 7.8E-05 39.7 3.7 63 160-233 227-295 (1108)
164 1vee_A Proline-rich protein fa 71.7 1.8 6.3E-05 29.1 1.9 36 160-195 74-110 (134)
165 3pey_A ATP-dependent RNA helic 70.7 11 0.00036 30.0 6.5 66 160-233 75-150 (395)
166 1c4o_A DNA nucleotide excision 70.4 24 0.00083 30.8 9.0 77 146-223 40-143 (664)
167 2lci_A Protein OR36; structura 69.3 18 0.0006 22.5 10.9 77 141-217 32-108 (134)
168 3hjh_A Transcription-repair-co 69.3 3.7 0.00013 34.4 3.5 74 148-234 371-444 (483)
169 1urh_A 3-mercaptopyruvate sulf 69.2 6.2 0.00021 30.1 4.6 37 160-196 230-267 (280)
170 3fht_A ATP-dependent RNA helic 69.0 6.7 0.00023 31.5 5.0 67 160-233 95-173 (412)
171 3sqw_A ATP-dependent RNA helic 68.5 10 0.00034 32.5 6.2 71 160-233 95-180 (579)
172 3tg1_B Dual specificity protei 68.3 3.1 0.0001 28.9 2.5 35 160-194 93-136 (158)
173 4fn4_A Short chain dehydrogena 68.1 32 0.0011 26.0 8.2 59 160-218 31-92 (254)
174 2p6r_A Afuhel308 helicase; pro 67.3 6.5 0.00022 34.6 4.9 67 160-233 68-143 (702)
175 3dmn_A Putative DNA helicase; 66.5 30 0.001 24.2 10.0 85 140-239 39-125 (174)
176 3i5x_A ATP-dependent RNA helic 66.1 2.4 8.4E-05 36.0 1.9 70 161-233 147-231 (563)
177 3hjh_A Transcription-repair-co 66.1 58 0.002 27.2 10.5 76 144-220 24-112 (483)
178 3gr1_A Protein PRGH; type III 65.2 20 0.00069 26.6 6.3 65 160-243 26-93 (227)
179 2oca_A DAR protein, ATP-depend 65.2 19 0.00065 30.0 7.2 53 160-219 157-213 (510)
180 2p65_A Hypothetical protein PF 64.0 4.9 0.00017 28.0 2.9 13 62-74 116-128 (187)
181 1uar_A Rhodanese; sulfurtransf 63.3 8.9 0.0003 29.3 4.5 36 160-195 233-270 (285)
182 3gr0_A Protein PRGH; type III 63.0 22 0.00076 25.7 6.1 65 160-243 26-93 (197)
183 4ag6_A VIRB4 ATPase, type IV s 61.6 3.8 0.00013 33.2 2.1 29 61-89 262-292 (392)
184 1u6t_A SH3 domain-binding glut 60.4 23 0.00077 23.4 5.3 39 168-206 14-52 (121)
185 3h11_B Caspase-8; cell death, 60.4 19 0.00067 27.5 5.8 39 169-208 47-85 (271)
186 3bos_A Putative DNA replicatio 60.2 2.4 8.3E-05 31.2 0.7 39 37-75 80-118 (242)
187 3o8b_A HCV NS3 protease/helica 59.4 22 0.00074 31.2 6.5 64 160-234 257-324 (666)
188 3aay_A Putative thiosulfate su 58.2 17 0.00059 27.5 5.3 36 159-194 225-262 (277)
189 2gno_A DNA polymerase III, gam 58.0 5.9 0.0002 30.9 2.6 62 37-101 49-119 (305)
190 1t57_A Conserved protein MTH16 57.5 4.4 0.00015 29.3 1.5 70 146-220 38-115 (206)
191 2orw_A Thymidine kinase; TMTK, 57.5 6.7 0.00023 28.0 2.6 14 60-73 75-88 (184)
192 2eg4_A Probable thiosulfate su 57.3 5.5 0.00019 29.5 2.2 36 160-195 184-219 (230)
193 1w36_D RECD, exodeoxyribonucle 56.8 7.5 0.00026 33.6 3.2 37 61-103 262-298 (608)
194 1pyo_A Caspase-2; apoptosis, c 56.6 27 0.00093 24.5 5.6 38 170-208 57-94 (167)
195 3fmp_B ATP-dependent RNA helic 56.3 9.9 0.00034 31.5 3.8 89 138-233 135-240 (479)
196 2h54_A Caspase-1; allosteric s 55.4 35 0.0012 24.2 6.1 47 161-208 44-101 (178)
197 2d7d_A Uvrabc system protein B 55.3 48 0.0016 29.0 8.1 78 146-224 44-148 (661)
198 2xgj_A ATP-dependent RNA helic 55.3 9.7 0.00033 35.2 3.8 63 160-233 129-197 (1010)
199 2kjq_A DNAA-related protein; s 55.0 4.7 0.00016 27.6 1.4 17 59-75 81-97 (149)
200 1qtn_A Caspase-8; apoptosis, d 54.6 38 0.0013 23.6 6.0 38 170-208 54-91 (164)
201 1urh_A 3-mercaptopyruvate sulf 54.3 9.1 0.00031 29.2 3.1 35 160-194 86-122 (280)
202 2lnd_A De novo designed protei 54.2 33 0.0011 20.6 7.3 59 146-206 38-98 (112)
203 2chg_A Replication factor C sm 53.3 16 0.00055 26.0 4.2 40 60-102 101-140 (226)
204 4a4z_A Antiviral helicase SKI2 53.0 16 0.00056 33.7 4.9 48 160-218 82-131 (997)
205 3e4c_A Caspase-1; zymogen, inf 52.9 41 0.0014 26.2 6.5 46 162-208 62-118 (302)
206 1uar_A Rhodanese; sulfurtransf 52.8 15 0.0005 28.1 4.1 35 160-194 79-115 (285)
207 1e0c_A Rhodanese, sulfurtransf 52.4 8.7 0.0003 29.1 2.7 36 160-195 223-259 (271)
208 1m72_A Caspase-1; caspase, cys 51.5 45 0.0016 25.4 6.5 39 170-209 55-93 (272)
209 1e0c_A Rhodanese, sulfurtransf 51.3 15 0.00052 27.8 3.9 35 160-194 81-117 (271)
210 2j48_A Two-component sensor ki 51.3 30 0.001 21.3 4.9 77 138-219 4-84 (119)
211 3te6_A Regulatory protein SIR3 50.8 23 0.00079 27.8 4.9 43 60-106 131-175 (318)
212 3hzu_A Thiosulfate sulfurtrans 50.2 18 0.00061 28.3 4.2 35 160-194 111-147 (318)
213 3lwd_A 6-phosphogluconolactona 49.8 24 0.00082 26.1 4.6 28 44-71 44-71 (226)
214 1d2n_A N-ethylmaleimide-sensit 49.6 7.3 0.00025 29.5 1.9 16 60-75 123-138 (272)
215 2j32_A Caspase-3; Pro-caspase3 49.6 80 0.0027 23.7 7.6 39 170-209 40-78 (250)
216 3u61_B DNA polymerase accessor 49.4 7.6 0.00026 30.3 2.0 41 59-101 103-143 (324)
217 3i2v_A Adenylyltransferase and 49.0 7.2 0.00025 25.5 1.5 35 161-195 73-114 (127)
218 2zj8_A DNA helicase, putative 48.9 9.6 0.00033 33.6 2.7 67 160-233 68-143 (720)
219 1rhs_A Sulfur-substituted rhod 48.4 16 0.00053 28.2 3.6 36 160-195 240-276 (296)
220 2nn3_C Caspase-1; cysteine pro 48.2 47 0.0016 26.0 6.2 48 161-209 61-121 (310)
221 3aay_A Putative thiosulfate su 48.1 22 0.00075 26.9 4.4 35 160-194 77-113 (277)
222 1a5t_A Delta prime, HOLB; zinc 48.0 10 0.00034 29.9 2.4 18 59-76 106-123 (334)
223 2va8_A SSO2462, SKI2-type heli 47.8 9.1 0.00031 33.7 2.4 67 160-233 75-150 (715)
224 2dko_A Caspase-3; low barrier 47.7 58 0.002 22.2 6.0 39 169-208 39-77 (146)
225 3h11_A CAsp8 and FADD-like apo 46.8 8.7 0.0003 29.5 1.8 48 160-208 43-90 (272)
226 1iqp_A RFCS; clamp loader, ext 46.7 24 0.00083 27.1 4.5 39 60-101 109-147 (327)
227 3grc_A Sensor protein, kinase; 46.6 54 0.0018 21.1 5.8 78 137-219 8-89 (140)
228 1vlj_A NADH-dependent butanol 46.4 91 0.0031 25.2 8.0 67 151-217 34-108 (407)
229 2ouc_A Dual specificity protei 46.4 7.6 0.00026 25.9 1.4 36 160-195 83-127 (142)
230 3h1t_A Type I site-specific re 46.2 61 0.0021 27.6 7.3 49 159-219 234-283 (590)
231 1rif_A DAR protein, DNA helica 46.0 26 0.00088 26.6 4.5 53 160-219 157-213 (282)
232 3ec2_A DNA replication protein 46.0 5.6 0.00019 27.9 0.6 71 36-106 66-145 (180)
233 1sxj_E Activator 1 40 kDa subu 45.7 11 0.00038 29.6 2.4 43 60-105 133-175 (354)
234 2b8t_A Thymidine kinase; deoxy 45.6 26 0.0009 25.8 4.3 35 39-74 68-102 (223)
235 3olh_A MST, 3-mercaptopyruvate 45.6 13 0.00043 28.9 2.7 36 160-195 254-290 (302)
236 1jr3_D DNA polymerase III, del 45.6 38 0.0013 26.5 5.5 63 59-124 74-139 (343)
237 3eod_A Protein HNR; response r 45.4 56 0.0019 20.7 6.0 78 137-219 9-88 (130)
238 2chq_A Replication factor C sm 44.9 27 0.00091 26.7 4.5 16 60-75 101-116 (319)
239 2z4s_A Chromosomal replication 44.5 8.4 0.00029 31.8 1.5 66 37-102 160-235 (440)
240 3cg4_A Response regulator rece 44.1 62 0.0021 20.8 6.1 79 137-220 9-91 (142)
241 3gt7_A Sensor protein; structu 44.0 67 0.0023 21.2 6.1 77 137-218 9-89 (154)
242 1l8q_A Chromosomal replication 43.9 6.2 0.00021 30.8 0.6 39 37-75 65-112 (324)
243 2fp3_A Caspase NC; apoptosis, 43.8 55 0.0019 25.6 6.0 48 160-208 61-120 (316)
244 3mwd_B ATP-citrate synthase; A 43.5 39 0.0013 26.7 5.1 52 161-212 81-133 (334)
245 3lte_A Response regulator; str 43.4 57 0.002 20.6 5.5 77 137-218 8-88 (132)
246 1g5t_A COB(I)alamin adenosyltr 42.9 16 0.00053 26.5 2.6 50 60-111 119-170 (196)
247 1sxj_B Activator 1 37 kDa subu 42.4 16 0.00055 28.1 2.8 38 61-101 107-144 (323)
248 2eg4_A Probable thiosulfate su 42.3 20 0.00067 26.4 3.2 33 160-193 61-95 (230)
249 3p45_A Caspase-6; protease, hu 42.3 82 0.0028 22.3 6.2 48 160-208 44-105 (179)
250 1w4r_A Thymidine kinase; type 42.2 9.8 0.00033 27.6 1.4 14 60-73 90-103 (195)
251 3f6p_A Transcriptional regulat 42.1 62 0.0021 20.2 6.0 77 137-218 4-81 (120)
252 2wlr_A Putative thiosulfate su 41.9 28 0.00096 28.4 4.3 36 160-195 203-239 (423)
253 1sxj_A Activator 1 95 kDa subu 41.9 12 0.0004 31.6 2.1 43 60-104 147-189 (516)
254 2qxy_A Response regulator; reg 41.8 68 0.0023 20.6 6.1 76 138-219 7-84 (142)
255 1jbw_A Folylpolyglutamate synt 41.1 80 0.0027 25.7 6.9 111 64-181 309-424 (428)
256 1njg_A DNA polymerase III subu 41.1 15 0.00052 26.5 2.4 16 60-75 125-140 (250)
257 3i42_A Response regulator rece 40.9 52 0.0018 20.7 4.9 80 137-221 5-88 (127)
258 1t1v_A SH3BGRL3, SH3 domain-bi 40.9 59 0.002 19.7 5.2 46 162-207 3-55 (93)
259 1jbk_A CLPB protein; beta barr 40.8 20 0.00067 24.8 2.9 14 62-75 116-129 (195)
260 2qr3_A Two-component system re 40.7 68 0.0023 20.5 5.6 76 138-218 6-88 (140)
261 3e1s_A Exodeoxyribonuclease V, 40.0 19 0.00065 30.9 3.1 35 60-100 278-312 (574)
262 3ntd_A FAD-dependent pyridine 39.8 14 0.0005 31.2 2.3 36 160-195 524-559 (565)
263 2j6p_A SB(V)-AS(V) reductase; 39.5 25 0.00085 24.0 3.1 36 160-195 67-111 (152)
264 3ics_A Coenzyme A-disulfide re 39.4 18 0.00061 31.0 2.8 36 160-195 541-576 (588)
265 3euj_A Chromosome partition pr 39.2 8.6 0.0003 32.2 0.8 39 60-105 413-451 (483)
266 2v1u_A Cell division control p 39.1 16 0.00056 28.8 2.5 15 62-76 131-145 (387)
267 2rjn_A Response regulator rece 38.9 81 0.0028 20.7 6.1 78 137-219 9-88 (154)
268 1o2d_A Alcohol dehydrogenase, 38.8 1.5E+02 0.005 23.6 8.0 70 147-217 28-105 (371)
269 3lhi_A Putative 6-phosphogluco 37.9 24 0.00082 26.2 3.0 28 44-71 45-72 (232)
270 1yt8_A Thiosulfate sulfurtrans 37.9 21 0.00073 30.2 3.1 35 160-194 322-357 (539)
271 2ql9_A Caspase-7; cysteine pro 37.6 83 0.0028 22.1 5.6 40 169-209 67-106 (173)
272 3kht_A Response regulator; PSI 37.6 82 0.0028 20.3 9.0 79 137-218 7-89 (144)
273 4gxt_A A conserved functionall 37.6 1.6E+02 0.0054 23.7 8.2 100 79-178 222-330 (385)
274 2pln_A HP1043, response regula 37.4 80 0.0027 20.2 5.6 77 136-219 19-95 (137)
275 1jr3_A DNA polymerase III subu 37.4 20 0.00068 28.3 2.7 17 59-75 117-133 (373)
276 3hv2_A Response regulator/HD d 37.3 85 0.0029 20.6 5.7 79 136-219 15-95 (153)
277 1okg_A Possible 3-mercaptopyru 37.2 36 0.0012 27.3 4.2 36 160-195 95-132 (373)
278 3syl_A Protein CBBX; photosynt 36.8 17 0.00058 27.9 2.2 13 62-74 131-143 (309)
279 3hzu_A Thiosulfate sulfurtrans 36.8 15 0.0005 28.8 1.8 36 160-195 259-296 (318)
280 3ox4_A Alcohol dehydrogenase 2 36.1 1.6E+02 0.0055 23.6 7.8 72 146-217 17-95 (383)
281 3fho_A ATP-dependent RNA helic 36.0 39 0.0014 28.2 4.4 66 160-233 189-264 (508)
282 3co5_A Putative two-component 35.9 24 0.00082 23.6 2.6 42 62-105 76-117 (143)
283 1t3k_A Arath CDC25, dual-speci 35.7 20 0.00068 24.5 2.1 37 160-196 85-131 (152)
284 4g81_D Putative hexonate dehyd 35.4 1.1E+02 0.0039 22.9 6.5 59 160-218 33-94 (255)
285 3sir_A Caspase; hydrolase; 2.6 35.3 69 0.0024 24.2 5.3 37 171-208 44-80 (259)
286 1jq5_A Glycerol dehydrogenase; 35.3 1.4E+02 0.0047 23.7 7.4 18 170-187 72-89 (370)
287 2l82_A Designed protein OR32; 35.2 88 0.003 20.0 11.1 78 140-217 57-136 (162)
288 2r62_A Cell division protease 35.1 31 0.0011 25.8 3.3 14 62-75 104-117 (268)
289 2w58_A DNAI, primosome compone 35.0 13 0.00045 26.5 1.2 15 60-74 114-128 (202)
290 3od5_A Caspase-6; caspase doma 34.8 86 0.003 23.9 5.8 38 170-208 45-82 (278)
291 1sxj_C Activator 1 40 kDa subu 34.8 38 0.0013 26.5 3.9 39 60-101 109-147 (340)
292 1qle_D Cytochrome AA3, ccytoch 34.7 17 0.00059 19.0 1.2 19 190-208 4-22 (43)
293 3t6k_A Response regulator rece 34.4 91 0.0031 20.0 5.6 78 137-219 6-87 (136)
294 1qkk_A DCTD, C4-dicarboxylate 34.3 84 0.0029 20.7 5.3 77 138-219 6-84 (155)
295 2qby_A CDC6 homolog 1, cell di 34.3 19 0.00066 28.4 2.1 15 62-76 129-143 (386)
296 3tla_A MCCF; serine protease, 34.1 1.2E+02 0.004 24.4 6.6 59 160-219 43-118 (371)
297 2qby_B CDC6 homolog 3, cell di 33.9 17 0.00057 28.9 1.7 38 64-104 136-174 (384)
298 2j9r_A Thymidine kinase; TK1, 33.8 20 0.00067 26.4 1.9 14 61-74 101-114 (214)
299 1xx6_A Thymidine kinase; NESG, 33.6 16 0.00054 26.3 1.4 14 61-74 81-94 (191)
300 3lfu_A DNA helicase II; SF1 he 33.5 1.7E+02 0.0057 25.1 8.1 32 160-191 347-378 (647)
301 3nwp_A 6-phosphogluconolactona 33.5 29 0.00098 25.8 2.8 28 44-71 48-75 (233)
302 2wlr_A Putative thiosulfate su 32.9 23 0.00079 28.9 2.4 36 160-195 358-394 (423)
303 1sxj_D Activator 1 41 kDa subu 32.8 26 0.00087 27.4 2.6 39 60-101 132-170 (353)
304 3heb_A Response regulator rece 32.8 1E+02 0.0035 20.1 8.8 83 137-219 6-98 (152)
305 2qgz_A Helicase loader, putati 32.2 38 0.0013 26.3 3.4 40 35-74 179-227 (308)
306 3hdg_A Uncharacterized protein 32.1 94 0.0032 19.7 5.1 78 137-219 9-88 (137)
307 3m6m_D Sensory/regulatory prot 32.0 93 0.0032 20.2 5.1 77 137-218 16-98 (143)
308 2qen_A Walker-type ATPase; unk 32.0 23 0.00078 27.5 2.2 13 63-75 130-142 (350)
309 1rhs_A Sulfur-substituted rhod 32.0 34 0.0012 26.2 3.2 35 160-194 92-130 (296)
310 1okg_A Possible 3-mercaptopyru 31.8 24 0.00083 28.3 2.3 37 160-196 246-283 (373)
311 4e7p_A Response regulator; DNA 31.6 1.1E+02 0.0037 20.0 7.9 79 137-218 22-102 (150)
312 3uk6_A RUVB-like 2; hexameric 31.6 37 0.0013 26.7 3.4 13 63-75 191-203 (368)
313 2fna_A Conserved hypothetical 31.5 37 0.0013 26.3 3.4 27 62-88 138-166 (357)
314 1fnn_A CDC6P, cell division co 31.5 11 0.00037 30.0 0.2 12 62-73 126-137 (389)
315 1mb3_A Cell division response 31.5 92 0.0032 19.3 4.9 77 138-219 4-84 (124)
316 2ct6_A SH3 domain-binding glut 31.1 1E+02 0.0035 19.5 4.9 46 161-206 8-60 (111)
317 3sr3_A Microcin immunity prote 30.9 1.2E+02 0.004 24.0 6.1 58 160-218 13-87 (336)
318 1mvo_A PHOP response regulator 30.9 92 0.0032 19.7 4.9 76 138-218 6-83 (136)
319 2gkg_A Response regulator homo 30.9 66 0.0023 20.0 4.1 66 137-207 7-73 (127)
320 1z63_A Helicase of the SNF2/RA 30.7 61 0.0021 26.8 4.7 58 151-218 77-136 (500)
321 1tvm_A PTS system, galactitol- 30.7 1.1E+02 0.0036 19.6 4.9 62 161-229 22-89 (113)
322 1yt8_A Thiosulfate sulfurtrans 30.6 25 0.00087 29.8 2.3 35 160-194 63-98 (539)
323 1f1j_A Caspase-7 protease; cas 30.5 80 0.0027 24.5 5.0 40 169-209 92-131 (305)
324 2c9o_A RUVB-like 1; hexameric 30.4 37 0.0013 28.0 3.3 13 63-75 297-309 (456)
325 4e5s_A MCCFLIKE protein (BA_56 29.7 1.4E+02 0.0049 23.4 6.4 60 160-219 12-87 (331)
326 3tp9_A Beta-lactamase and rhod 29.6 26 0.00088 29.1 2.2 36 160-195 427-463 (474)
327 3kto_A Response regulator rece 29.5 71 0.0024 20.5 4.1 78 137-219 8-89 (136)
328 1b93_A Protein (methylglyoxal 29.5 66 0.0023 22.1 3.9 47 169-219 45-91 (152)
329 3pvs_A Replication-associated 29.3 41 0.0014 27.8 3.3 17 60-76 105-121 (447)
330 2z06_A Putative uncharacterize 29.0 92 0.0032 23.5 4.9 53 166-221 121-173 (252)
331 2l8b_A Protein TRAI, DNA helic 28.7 18 0.00062 26.0 0.9 63 36-103 79-158 (189)
332 4as2_A Phosphorylcholine phosp 28.6 54 0.0018 25.8 3.8 113 79-192 144-287 (327)
333 1zl0_A Hypothetical protein PA 28.2 1.5E+02 0.005 23.1 6.2 58 161-219 18-89 (311)
334 3hly_A Flavodoxin-like domain; 28.1 1.4E+02 0.0049 20.2 5.6 15 171-185 16-30 (161)
335 3fni_A Putative diflavin flavo 28.1 97 0.0033 21.1 4.7 25 168-192 17-41 (159)
336 3dmq_A RNA polymerase-associat 28.0 34 0.0011 31.5 2.8 66 150-218 190-256 (968)
337 3rqi_A Response regulator prot 27.9 1.5E+02 0.005 20.3 6.1 78 137-219 9-88 (184)
338 3a10_A Response regulator; pho 27.9 1.1E+02 0.0036 18.7 5.3 77 138-219 4-82 (116)
339 4b3f_X DNA-binding protein smu 27.7 12 0.00042 32.5 -0.1 38 37-74 342-379 (646)
340 2rdm_A Response regulator rece 27.7 1.2E+02 0.004 19.0 6.0 77 138-219 8-88 (132)
341 4h1h_A LMO1638 protein; MCCF-l 27.7 1.7E+02 0.0059 22.8 6.5 58 160-218 12-86 (327)
342 3n70_A Transport activator; si 27.5 23 0.00079 23.7 1.3 13 63-75 78-90 (145)
343 2xw6_A MGS, methylglyoxal synt 27.5 57 0.002 21.9 3.2 48 168-219 36-83 (134)
344 2pl1_A Transcriptional regulat 27.4 1.1E+02 0.0038 18.7 5.3 75 139-218 4-80 (121)
345 1srr_A SPO0F, sporulation resp 27.3 1.1E+02 0.0039 18.9 5.0 77 137-218 5-83 (124)
346 1rrm_A Lactaldehyde reductase; 27.0 1.8E+02 0.0062 23.2 6.8 67 151-217 22-95 (386)
347 3eie_A Vacuolar protein sortin 26.9 48 0.0017 25.7 3.3 14 62-75 111-124 (322)
348 1ta9_A Glycerol dehydrogenase; 26.8 2.2E+02 0.0074 23.5 7.3 42 173-215 107-150 (450)
349 3czc_A RMPB; alpha/beta sandwi 26.8 1.1E+02 0.0039 19.3 4.5 58 161-225 19-82 (110)
350 1w5s_A Origin recognition comp 26.8 29 0.001 27.7 2.0 14 62-75 139-152 (412)
351 2wci_A Glutaredoxin-4; redox-a 26.7 1.4E+02 0.0049 19.8 7.2 64 148-214 25-94 (135)
352 1z3i_X Similar to RAD54-like; 26.6 2.6E+02 0.0088 24.2 8.1 56 161-218 115-178 (644)
353 2qp9_X Vacuolar protein sortin 26.2 40 0.0014 26.7 2.7 15 61-75 143-157 (355)
354 3ijp_A DHPR, dihydrodipicolina 26.1 1.9E+02 0.0064 22.3 6.3 63 161-226 89-151 (288)
355 3ipz_A Monothiol glutaredoxin- 26.1 1.3E+02 0.0043 18.9 8.7 52 160-211 17-74 (109)
356 2a9o_A Response regulator; ess 25.8 1.2E+02 0.004 18.5 4.8 76 138-218 4-80 (120)
357 1j5p_A Aspartate dehydrogenase 25.7 1.9E+02 0.0066 21.7 6.2 30 162-191 62-91 (253)
358 2xzl_A ATP-dependent helicase 25.5 36 0.0012 30.6 2.5 33 37-74 498-530 (802)
359 3cfy_A Putative LUXO repressor 25.4 1E+02 0.0036 19.7 4.4 77 137-218 6-84 (137)
360 3s5u_A Putative uncharacterize 25.3 2E+02 0.0069 21.0 6.3 48 146-193 147-199 (220)
361 3iwt_A 178AA long hypothetical 25.3 1.7E+02 0.0059 20.2 6.9 53 172-225 41-96 (178)
362 2qzj_A Two-component response 25.3 1.4E+02 0.0047 19.1 5.7 76 138-218 7-83 (136)
363 3crn_A Response regulator rece 25.1 1.3E+02 0.0046 18.9 5.3 77 138-219 6-84 (132)
364 1zgz_A Torcad operon transcrip 25.1 1.3E+02 0.0043 18.6 5.6 76 138-218 5-81 (122)
365 2qh8_A Uncharacterized protein 25.1 2.1E+02 0.0072 21.5 6.6 47 146-192 24-77 (302)
366 1xhf_A DYE resistance, aerobic 24.7 1.3E+02 0.0044 18.5 5.7 76 138-218 6-82 (123)
367 3ucx_A Short chain dehydrogena 24.4 2.1E+02 0.0074 21.0 8.0 67 151-218 27-96 (264)
368 3upu_A ATP-dependent DNA helic 24.3 53 0.0018 27.0 3.2 38 145-182 233-274 (459)
369 2jba_A Phosphate regulon trans 24.1 1.3E+02 0.0046 18.5 5.0 76 138-218 5-84 (127)
370 3kl4_A SRP54, signal recogniti 23.9 58 0.002 26.8 3.3 55 60-115 178-234 (433)
371 3qhq_A CSN2, SAG0897 family cr 23.8 1.9E+02 0.0066 21.3 5.8 48 146-193 147-199 (229)
372 2kpo_A Rossmann 2X2 fold prote 23.7 1.2E+02 0.0042 18.0 8.1 67 141-208 32-98 (110)
373 3r1i_A Short-chain type dehydr 23.6 2.3E+02 0.0079 21.1 6.9 68 150-218 47-117 (276)
374 1k66_A Phytochrome response re 23.6 1.5E+02 0.0051 18.9 7.4 82 138-219 9-101 (149)
375 4f3y_A DHPR, dihydrodipicolina 23.6 2.1E+02 0.0073 21.6 6.2 61 162-225 75-135 (272)
376 2w0m_A SSO2452; RECA, SSPF, un 23.6 28 0.00094 25.1 1.2 14 61-74 121-136 (235)
377 4dik_A Flavoprotein; TM0755, e 23.4 3E+02 0.01 22.3 8.9 56 168-224 278-334 (410)
378 3bfj_A 1,3-propanediol oxidore 23.4 2.8E+02 0.0095 22.1 7.2 67 151-217 24-99 (387)
379 2orv_A Thymidine kinase; TP4A 23.3 31 0.0011 25.7 1.4 15 60-74 89-103 (234)
380 3olh_A MST, 3-mercaptopyruvate 23.3 60 0.0021 25.0 3.1 35 160-194 107-145 (302)
381 2yv2_A Succinyl-COA synthetase 23.2 1.5E+02 0.005 22.8 5.3 57 160-218 72-129 (297)
382 1t70_A Phosphatase; crystal, X 23.1 80 0.0027 23.8 3.7 52 166-220 124-175 (255)
383 1c25_A CDC25A; hydrolase, cell 22.9 33 0.0011 23.4 1.4 36 160-195 87-136 (161)
384 3klo_A Transcriptional regulat 22.8 2.1E+02 0.0071 20.3 6.2 81 137-219 9-92 (225)
385 1dbw_A Transcriptional regulat 22.7 1.4E+02 0.005 18.5 6.5 77 138-219 6-84 (126)
386 3cg0_A Response regulator rece 22.5 1.3E+02 0.0043 19.1 4.4 78 137-219 11-91 (140)
387 3ju3_A Probable 2-oxoacid ferr 22.4 66 0.0022 20.8 2.7 34 161-194 14-49 (118)
388 1jr5_A 10 kDa anti-sigma facto 22.3 24 0.00083 21.7 0.5 22 190-211 57-78 (90)
389 2v6i_A RNA helicase; membrane, 22.3 2.2E+02 0.0075 23.1 6.5 34 160-195 31-64 (431)
390 4ehd_A Caspase-3; caspase, apo 22.3 1.5E+02 0.0053 22.5 5.2 40 169-209 67-106 (277)
391 3c3m_A Response regulator rece 22.2 1.6E+02 0.0054 18.7 5.3 77 138-219 6-86 (138)
392 3h5i_A Response regulator/sens 22.1 1.6E+02 0.0055 18.7 6.7 79 137-220 7-88 (140)
393 3zyw_A Glutaredoxin-3; metal b 22.0 1.6E+02 0.0054 18.6 8.6 52 160-211 15-72 (111)
394 1e9r_A Conjugal transfer prote 21.9 1.7E+02 0.0059 23.6 5.8 38 62-103 280-317 (437)
395 1k68_A Phytochrome response re 21.9 1.6E+02 0.0053 18.5 8.2 78 138-218 5-93 (140)
396 3vfd_A Spastin; ATPase, microt 21.9 39 0.0013 27.1 1.9 14 62-75 208-221 (389)
397 2o0j_A Terminase, DNA packagin 21.9 39 0.0013 27.3 1.8 15 61-75 273-287 (385)
398 3ce9_A Glycerol dehydrogenase; 21.8 2.9E+02 0.0099 21.6 8.5 18 169-187 74-91 (354)
399 3r2u_A Metallo-beta-lactamase 21.5 20 0.00067 29.8 0.0 36 160-195 425-461 (466)
400 2yv1_A Succinyl-COA ligase [AD 21.4 2E+02 0.0069 22.0 5.8 57 160-218 71-128 (294)
401 2ayx_A Sensor kinase protein R 21.4 2.3E+02 0.0078 20.8 6.0 79 136-219 130-210 (254)
402 3sxu_A DNA polymerase III subu 21.1 1.7E+02 0.0059 19.9 4.8 80 147-238 24-105 (150)
403 3tx2_A Probable 6-phosphogluco 20.9 44 0.0015 25.1 1.8 28 44-71 50-79 (251)
404 1vmd_A MGS, methylglyoxal synt 20.9 91 0.0031 22.1 3.3 48 168-219 60-107 (178)
405 3h4m_A Proteasome-activating n 20.8 48 0.0016 24.9 2.1 13 62-74 111-123 (285)
406 1nw9_B Caspase 9, apoptosis-re 20.8 1.3E+02 0.0043 22.9 4.4 38 170-208 45-82 (277)
407 1vl1_A 6PGL, 6-phosphogluconol 20.6 88 0.003 23.1 3.4 29 43-71 55-83 (232)
408 3kht_A Response regulator; PSI 20.6 1.8E+02 0.006 18.6 6.0 53 161-217 6-58 (144)
409 3mm4_A Histidine kinase homolo 20.3 2.3E+02 0.0079 19.8 9.0 83 136-219 62-160 (206)
410 1wik_A Thioredoxin-like protei 20.3 1.7E+02 0.0057 18.2 7.1 54 160-213 14-73 (109)
411 2nu8_A Succinyl-COA ligase [AD 20.3 2.3E+02 0.0079 21.6 5.9 58 160-219 65-123 (288)
412 1dc7_A NTRC, nitrogen regulati 20.2 1.3E+02 0.0044 18.4 4.0 75 139-218 7-83 (124)
413 2yvq_A Carbamoyl-phosphate syn 20.0 1.1E+02 0.0037 20.6 3.6 42 178-220 61-106 (143)
414 3e2i_A Thymidine kinase; Zn-bi 20.0 44 0.0015 24.6 1.6 26 60-87 100-125 (219)
No 1
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=1.2e-42 Score=291.22 Aligned_cols=244 Identities=30% Similarity=0.437 Sum_probs=214.6
Q ss_pred CcchHHHHHHHhhcCCCcEEEEcccchh---hhcccccCCCcEEEeChHHHHHHHhcCCcccCceeEEEEeccccccccC
Q 042003 1 LATQTTRECKKLAKGNKFQIKLMKKELV---RSTDLSKFSCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEVG 77 (248)
Q Consensus 1 L~~Q~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~v~Tp~~l~~~~~~~~~~~~~~~~lIiDEah~~~~~~ 77 (248)
||.|+++.+++++...+ ..+..++|+. .+......+++|+|+||++|.+++.++...+++++++|+||||++.+++
T Consensus 141 La~Q~~~~~~~~~~~~~-~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~g 219 (434)
T 2db3_A 141 LAIQIFNEARKFAFESY-LKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRMLDMG 219 (434)
T ss_dssp HHHHHHHHHHHHTTTSS-CCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSCCCTTCCEEEEETHHHHTSTT
T ss_pred HHHHHHHHHHHHhccCC-cEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCCcccccCCeEEEccHhhhhccC
Confidence 68999999999998877 4555556655 3344456789999999999999999888889999999999999999988
Q ss_pred cccccchhHhhhCC-CccceeEEEEeecCchHHHHHHHhcCCcEEEEEcccccccccceeEEEEcCCchhHHHHHHHHHh
Q 042003 78 NLLKHIDPVVKACS-NPSIVRSLFSATLPDFVEELARSIMHDAVRVIVGRKNTASESIKQKLVFAGSEEGKLLALRQSFA 156 (248)
Q Consensus 78 ~~~~~~~~~~~~~~-~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 156 (248)
|...+..++..+. ....|++++|||+++....+...++.++..+...........+.+.+..+.. ..+...+.+++.
T Consensus 220 -f~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~~~~~~~~~-~~k~~~l~~~l~ 297 (434)
T 2db3_A 220 -FSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVNK-YAKRSKLIEILS 297 (434)
T ss_dssp -THHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTTCCCTTEEEEEEECCG-GGHHHHHHHHHH
T ss_pred -cHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhccCCEEEEeccccccccccceEEEEeCc-HHHHHHHHHHHH
Confidence 8888888888753 5678999999999999999999999998888887776666777777766554 457888888888
Q ss_pred ccCCCCEEEEecchHHHHHHHHHhhcCCCeeEEEecCCCHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCcEEEecc
Q 042003 157 ESLNPPVLIFVQSKERAKELYGELAFDGIRAGVIHSDLSQTQRENAVDDFRAGKTWVLIATDVIARGMDFKGVNCVINYD 236 (248)
Q Consensus 157 ~~~~~~~liF~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gidip~~~~Vi~~~ 236 (248)
... .++||||++++.++.+++.|++.++++..+||++++.+|+++++.|++|+.+|||||+++++|+|+|++++||+||
T Consensus 298 ~~~-~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlDi~~v~~VI~~d 376 (434)
T 2db3_A 298 EQA-DGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVINYD 376 (434)
T ss_dssp HCC-TTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCCCTTCCEEEESS
T ss_pred hCC-CCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchhhhCCCCcccCCEEEEEC
Confidence 764 5699999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccceecC
Q 042003 237 FPDSGAAYIHRI 248 (248)
Q Consensus 237 ~p~~~~~~~qri 248 (248)
+|.++.+|+||+
T Consensus 377 ~p~~~~~y~qri 388 (434)
T 2db3_A 377 MPSKIDDYVHRI 388 (434)
T ss_dssp CCSSHHHHHHHH
T ss_pred CCCCHHHHHHHh
Confidence 999999999985
No 2
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=6.7e-41 Score=279.02 Aligned_cols=245 Identities=31% Similarity=0.425 Sum_probs=215.8
Q ss_pred CcchHHHHHHHhhcCCCcEEEEcccchh---hhcccccCCCcEEEeChHHHHHHHhcCCcccCceeEEEEeccccccccC
Q 042003 1 LATQTTRECKKLAKGNKFQIKLMKKELV---RSTDLSKFSCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEVG 77 (248)
Q Consensus 1 L~~Q~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~v~Tp~~l~~~~~~~~~~~~~~~~lIiDEah~~~~~~ 77 (248)
|+.|+++.+++++...+ ..+....|+. .+......+++|+|+||+++.+.+.++...+.+++++|+||||++.+++
T Consensus 117 L~~q~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViDEah~~~~~~ 195 (410)
T 2j0s_A 117 LAVQIQKGLLALGDYMN-VQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKG 195 (410)
T ss_dssp HHHHHHHHHHHHTTTTT-CCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHTSTT
T ss_pred HHHHHHHHHHHHhccCC-eEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCCccHhheeEEEEccHHHHHhhh
Confidence 67899999999998888 4444445544 2223344678999999999999999888888999999999999998887
Q ss_pred cccccchhHhhhCCCccceeEEEEeecCchHHHHHHHhcCCcEEEEEcccccccccceeEEEEcCCchhHHHHHHHHHhc
Q 042003 78 NLLKHIDPVVKACSNPSIVRSLFSATLPDFVEELARSIMHDAVRVIVGRKNTASESIKQKLVFAGSEEGKLLALRQSFAE 157 (248)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 157 (248)
+...+..+.+. .+...|++++|||+++...+....++.++..+...........+.+.+......+.+...+.+++..
T Consensus 196 -~~~~~~~i~~~-~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~ 273 (410)
T 2j0s_A 196 -FKEQIYDVYRY-LPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDT 273 (410)
T ss_dssp -THHHHHHHHTT-SCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCCGGGCSCTTEEEEEEEESSTTHHHHHHHHHHHH
T ss_pred -hHHHHHHHHHh-CccCceEEEEEcCCCHHHHHHHHHHcCCCEEEEecCccccCCCceEEEEEeCcHHhHHHHHHHHHHh
Confidence 77888888776 4567899999999999888888888888888877777777778888888888888899999999988
Q ss_pred cCCCCEEEEecchHHHHHHHHHhhcCCCeeEEEecCCCHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCcEEEeccC
Q 042003 158 SLNPPVLIFVQSKERAKELYGELAFDGIRAGVIHSDLSQTQRENAVDDFRAGKTWVLIATDVIARGMDFKGVNCVINYDF 237 (248)
Q Consensus 158 ~~~~~~liF~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gidip~~~~Vi~~~~ 237 (248)
...+++||||++++.++.+++.|++.++.+..+||++++++|+.+++.|++|+.+|||||+++++|+|+|++++||++|+
T Consensus 274 ~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~~~~ 353 (410)
T 2j0s_A 274 LTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDL 353 (410)
T ss_dssp HTSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTEEEEEESSC
T ss_pred cCCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCcccCCEEEEECC
Confidence 77789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccceecC
Q 042003 238 PDSGAAYIHRI 248 (248)
Q Consensus 238 p~~~~~~~qri 248 (248)
|+|+..|+||+
T Consensus 354 p~s~~~~~Qr~ 364 (410)
T 2j0s_A 354 PNNRELYIHRI 364 (410)
T ss_dssp CSSHHHHHHHH
T ss_pred CCCHHHHHHhc
Confidence 99999999985
No 3
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=4.8e-40 Score=274.37 Aligned_cols=245 Identities=34% Similarity=0.496 Sum_probs=207.2
Q ss_pred CcchHHHHHHHhhcCCCcEEEEcccchh---hhcccccCCCcEEEeChHHHHHHHhcCCcccCceeEEEEeccccccccC
Q 042003 1 LATQTTRECKKLAKGNKFQIKLMKKELV---RSTDLSKFSCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEVG 77 (248)
Q Consensus 1 L~~Q~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~v~Tp~~l~~~~~~~~~~~~~~~~lIiDEah~~~~~~ 77 (248)
||.|+++.++++....+ ..+..+.|+. .+......+++|+|+||+++.+.+..+...+++++++|+||||++.+++
T Consensus 113 L~~q~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~iViDEah~~~~~~ 191 (417)
T 2i4i_A 113 LAVQIYEEARKFSYRSR-VRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMG 191 (417)
T ss_dssp HHHHHHHHHHHHHTTSS-CCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSBCCTTCCEEEESSHHHHHHTT
T ss_pred HHHHHHHHHHHHhCcCC-ceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHHHHcCCcChhhCcEEEEEChhHhhccC
Confidence 68899999999998877 4444555554 2233345679999999999999999888888999999999999999888
Q ss_pred cccccchhHhhhCC---CccceeEEEEeecCchHHHHHHHhcCCcEEEEEcccccccccceeEEEEcCCchhHHHHHHHH
Q 042003 78 NLLKHIDPVVKACS---NPSIVRSLFSATLPDFVEELARSIMHDAVRVIVGRKNTASESIKQKLVFAGSEEGKLLALRQS 154 (248)
Q Consensus 78 ~~~~~~~~~~~~~~---~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 154 (248)
+...+..++.... ....|++++|||+++....+...++.++..+...........+.+.+..+.. ..+...+.++
T Consensus 192 -~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~l~~~ 269 (417)
T 2i4i_A 192 -FEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEE-SDKRSFLLDL 269 (417)
T ss_dssp -CHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC----CCSSEEEEEEECCG-GGHHHHHHHH
T ss_pred -cHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeCCCCCCccCceEEEEEecc-HhHHHHHHHH
Confidence 8888888877432 2367899999999998888888888888887777666666677777666554 4578888888
Q ss_pred Hhcc-CCCCEEEEecchHHHHHHHHHhhcCCCeeEEEecCCCHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCcEEE
Q 042003 155 FAES-LNPPVLIFVQSKERAKELYGELAFDGIRAGVIHSDLSQTQRENAVDDFRAGKTWVLIATDVIARGMDFKGVNCVI 233 (248)
Q Consensus 155 ~~~~-~~~~~liF~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gidip~~~~Vi 233 (248)
++.. .++++||||+++++++.+++.|++.++.+..+||+++.++|.++++.|++|+.+|||||+++++|+|+|++++||
T Consensus 270 l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidip~v~~Vi 349 (417)
T 2i4i_A 270 LNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVI 349 (417)
T ss_dssp HHTCCTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECHHHHTTSCCCCEEEEE
T ss_pred HHhcCCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEE
Confidence 8876 367899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCcccceecC
Q 042003 234 NYDFPDSGAAYIHRI 248 (248)
Q Consensus 234 ~~~~p~~~~~~~qri 248 (248)
++++|+|+..|+||+
T Consensus 350 ~~~~p~s~~~~~Qr~ 364 (417)
T 2i4i_A 350 NFDLPSDIEEYVHRI 364 (417)
T ss_dssp ESSCCSSHHHHHHHH
T ss_pred EEcCCCCHHHHHHhc
Confidence 999999999999984
No 4
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=2.8e-40 Score=275.50 Aligned_cols=246 Identities=28% Similarity=0.421 Sum_probs=209.8
Q ss_pred CcchHHHHHHHhhcCCCcEEEEcccchh---hhcccccCCCcEEEeChHHHHHHHhcCCcccCceeEEEEeccccccccC
Q 042003 1 LATQTTRECKKLAKGNKFQIKLMKKELV---RSTDLSKFSCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEVG 77 (248)
Q Consensus 1 L~~Q~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~v~Tp~~l~~~~~~~~~~~~~~~~lIiDEah~~~~~~ 77 (248)
|+.|+++.+++++...+.......+|.. ........+++|+|+||+++.+.+..+...+.+++++|+||||++.+++
T Consensus 120 L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vViDEah~~~~~~ 199 (414)
T 3eiq_A 120 LAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRG 199 (414)
T ss_dssp HHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEECSHHHHHHTT
T ss_pred HHHHHHHHHHHHhcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccCcEEEEECHHHhhccC
Confidence 5789999999999888744444444433 1222333678999999999999999988888999999999999998887
Q ss_pred cccccchhHhhhCCCccceeEEEEeecCchHHHHHHHhcCCcEEEEEcccccccccceeEEEEcCCchhHHHHHHHHHhc
Q 042003 78 NLLKHIDPVVKACSNPSIVRSLFSATLPDFVEELARSIMHDAVRVIVGRKNTASESIKQKLVFAGSEEGKLLALRQSFAE 157 (248)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 157 (248)
+...+..++.. .....|++++|||+++........++.++..+...........+.+.+......+.+...+..++..
T Consensus 200 -~~~~~~~~~~~-~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 277 (414)
T 3eiq_A 200 -FKDQIYDIFQK-LNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYET 277 (414)
T ss_dssp -THHHHHHHHTT-SCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCCCCTTSCCEEEEECSSSTTHHHHHHHHHHS
T ss_pred -cHHHHHHHHHh-CCCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCccCCCCceEEEEEeChHHhHHHHHHHHHHh
Confidence 77888888777 4568899999999999899999999999988877777777788888888888888899999999998
Q ss_pred cCCCCEEEEecchHHHHHHHHHhhcCCCeeEEEecCCCHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCcEEEeccC
Q 042003 158 SLNPPVLIFVQSKERAKELYGELAFDGIRAGVIHSDLSQTQRENAVDDFRAGKTWVLIATDVIARGMDFKGVNCVINYDF 237 (248)
Q Consensus 158 ~~~~~~liF~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gidip~~~~Vi~~~~ 237 (248)
...+++||||++++.++.+++.|++.++.+..+||+|+.++|..+++.|++|+.+|||||+++++|+|+|++++||++++
T Consensus 278 ~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~~Vi~~~~ 357 (414)
T 3eiq_A 278 LTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDL 357 (414)
T ss_dssp SCCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CCGGGCSCEEESSC
T ss_pred CCCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCCccCCCEEEEeCC
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccceecC
Q 042003 238 PDSGAAYIHRI 248 (248)
Q Consensus 238 p~~~~~~~qri 248 (248)
|+|+..|+||+
T Consensus 358 p~s~~~~~Qr~ 368 (414)
T 3eiq_A 358 PTNRENYIHRI 368 (414)
T ss_dssp CSSTHHHHHHS
T ss_pred CCCHHHhhhhc
Confidence 99999999996
No 5
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=1.9e-39 Score=270.22 Aligned_cols=247 Identities=28% Similarity=0.359 Sum_probs=214.8
Q ss_pred CcchHHHHHHHhhcCCCcEEEEcccchhhhcccccCCCcEEEeChHHHHHHHhc-CCcccCceeEEEEeccccccccCcc
Q 042003 1 LATQTTRECKKLAKGNKFQIKLMKKELVRSTDLSKFSCDILISTPLRLRLAIRR-KKIDLSRVEYLVLDEADKLFEVGNL 79 (248)
Q Consensus 1 L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Tp~~l~~~~~~-~~~~~~~~~~lIiDEah~~~~~~~~ 79 (248)
||.|+++.++++....+...+....++.........+++|+|+||+++.+.+.+ +...+.+++++|+||||++.+...+
T Consensus 107 L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iViDEah~~~~~~~~ 186 (412)
T 3fht_A 107 LALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGH 186 (412)
T ss_dssp HHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTTCCCCCSEEEECHHHHHHHHTTSCSSCGGGCCEEEEETHHHHHSTTTT
T ss_pred HHHHHHHHHHHHHhhcccceEEEeecCcchhhhhcCCCCEEEECchHHHHHHHhcCCcChhhCcEEEEeCHHHHhhcCCc
Confidence 578999999999887643556656665544444566789999999999999866 5567899999999999998874436
Q ss_pred cccchhHhhhCCCccceeEEEEeecCchHHHHHHHhcCCcEEEEEcccccccccceeEEEEcCCchhHHHHHHHHHhccC
Q 042003 80 LKHIDPVVKACSNPSIVRSLFSATLPDFVEELARSIMHDAVRVIVGRKNTASESIKQKLVFAGSEEGKLLALRQSFAESL 159 (248)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 159 (248)
...+..+... .+...|++++|||+++........++.++..+...........+.+.+........+...+..++....
T Consensus 187 ~~~~~~~~~~-~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 265 (412)
T 3fht_A 187 QDQSIRIQRM-LPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNLYGAIT 265 (412)
T ss_dssp HHHHHHHHHT-SCTTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCGGGSSCTTEEEEEEECSSHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhh-CCCCceEEEEEeecCHHHHHHHHHhcCCCeEEeeccccccccCceEEEEEcCChHHHHHHHHHHHhhcC
Confidence 6777777766 566789999999999999999999999998888777777778888888888888889999999998877
Q ss_pred CCCEEEEecchHHHHHHHHHhhcCCCeeEEEecCCCHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCcEEEeccCCC
Q 042003 160 NPPVLIFVQSKERAKELYGELAFDGIRAGVIHSDLSQTQRENAVDDFRAGKTWVLIATDVIARGMDFKGVNCVINYDFPD 239 (248)
Q Consensus 160 ~~~~liF~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gidip~~~~Vi~~~~p~ 239 (248)
++++||||++++.++.+++.|++.++.+..+||+|+.++|..+++.|++|+.+|||||+++++|+|+|++++||++|+|+
T Consensus 266 ~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~ 345 (412)
T 3fht_A 266 IAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPV 345 (412)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSSCCCTTEEEEEESSCCB
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccCCCccCCCEEEEECCCC
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999995
Q ss_pred ------CcccceecC
Q 042003 240 ------SGAAYIHRI 248 (248)
Q Consensus 240 ------~~~~~~qri 248 (248)
+..+|+||+
T Consensus 346 ~~~~~~s~~~~~Qr~ 360 (412)
T 3fht_A 346 DKDGNPDNETYLHRI 360 (412)
T ss_dssp CSSSSBCHHHHHHHH
T ss_pred CCCCCcchheeeccc
Confidence 457899984
No 6
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=6e-39 Score=265.65 Aligned_cols=245 Identities=31% Similarity=0.457 Sum_probs=212.9
Q ss_pred CcchHHHHHHHhhcCCCcEEEEcccchhhhcccccCCCcEEEeChHHHHHHHhcCCcccCceeEEEEeccccccccCccc
Q 042003 1 LATQTTRECKKLAKGNKFQIKLMKKELVRSTDLSKFSCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEVGNLL 80 (248)
Q Consensus 1 L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Tp~~l~~~~~~~~~~~~~~~~lIiDEah~~~~~~~~~ 80 (248)
|+.|+++.++++++..+ ..+....++... .....+++|+|+||+++.+.+.+....+.+++++|+||||++.+...+.
T Consensus 87 L~~q~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~ 164 (395)
T 3pey_A 87 LARQTLEVVQEMGKFTK-ITSQLIVPDSFE-KNKQINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLG 164 (395)
T ss_dssp HHHHHHHHHHHHTTTSC-CCEEEESTTSSC-TTSCBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEETHHHHHHSTTHH
T ss_pred HHHHHHHHHHHHhcccC-eeEEEEecCchh-hhccCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEEChhhhcCccccH
Confidence 57899999999988777 344444443322 2233478999999999999998888889999999999999988743366
Q ss_pred ccchhHhhhCCCccceeEEEEeecCchHHHHHHHhcCCcEEEEEcccccccccceeEEEEcCCchhHHHHHHHHHhccCC
Q 042003 81 KHIDPVVKACSNPSIVRSLFSATLPDFVEELARSIMHDAVRVIVGRKNTASESIKQKLVFAGSEEGKLLALRQSFAESLN 160 (248)
Q Consensus 81 ~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 160 (248)
..+..+... .+...|++++|||+++........++.++..+...........+.+.+........+...+..++....+
T Consensus 165 ~~~~~~~~~-~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 243 (395)
T 3pey_A 165 DQCIRVKRF-LPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKNEADKFDVLTELYGLMTI 243 (395)
T ss_dssp HHHHHHHHT-SCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGGCSCTTEEEEEEECSSHHHHHHHHHHHHTTTTS
T ss_pred HHHHHHHHh-CCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEccccccccccccEEEEEcCchHHHHHHHHHHHHhccC
Confidence 777777766 5567899999999999889999999888888877777777777888888888888899999999988878
Q ss_pred CCEEEEecchHHHHHHHHHhhcCCCeeEEEecCCCHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCcEEEeccCCC-
Q 042003 161 PPVLIFVQSKERAKELYGELAFDGIRAGVIHSDLSQTQRENAVDDFRAGKTWVLIATDVIARGMDFKGVNCVINYDFPD- 239 (248)
Q Consensus 161 ~~~liF~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gidip~~~~Vi~~~~p~- 239 (248)
+++||||++++.++.+++.|++.++.+..+||+|+.++|.++++.|++|+.+|||||+++++|+|+|++++||++|+|+
T Consensus 244 ~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~ 323 (395)
T 3pey_A 244 GSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYDLPTL 323 (395)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTTEEEEEESSCCBC
T ss_pred CCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCcccCCEEEEcCCCCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred -----CcccceecC
Q 042003 240 -----SGAAYIHRI 248 (248)
Q Consensus 240 -----~~~~~~qri 248 (248)
|+..|+||+
T Consensus 324 ~~~~~s~~~~~Qr~ 337 (395)
T 3pey_A 324 ANGQADPATYIHRI 337 (395)
T ss_dssp TTSSBCHHHHHHHH
T ss_pred CcCCCCHHHhhHhc
Confidence 999999984
No 7
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=7.3e-39 Score=265.05 Aligned_cols=246 Identities=26% Similarity=0.359 Sum_probs=205.5
Q ss_pred CcchHHHHHHHhhcCCCcEEEEcccchhhh----cccccCCCcEEEeChHHHHHHHhcCCcccCceeEEEEecccccccc
Q 042003 1 LATQTTRECKKLAKGNKFQIKLMKKELVRS----TDLSKFSCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEV 76 (248)
Q Consensus 1 L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~i~v~Tp~~l~~~~~~~~~~~~~~~~lIiDEah~~~~~ 76 (248)
|+.|+++.++++....+...+..+.|+... .......++|+|+||+++.+.+......+.+++++|+||||++.++
T Consensus 88 L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH~~~~~ 167 (391)
T 1xti_A 88 LAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQ 167 (391)
T ss_dssp HHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHHHHTSS
T ss_pred HHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCHHHHhhc
Confidence 578999999999877632556666665421 1222345899999999999999888888899999999999999875
Q ss_pred CcccccchhHhhhCCCccceeEEEEeecCchHHHHHHHhcCCcEEEEEccccc-ccccceeEEEEcCCchhHHHHHHHHH
Q 042003 77 GNLLKHIDPVVKACSNPSIVRSLFSATLPDFVEELARSIMHDAVRVIVGRKNT-ASESIKQKLVFAGSEEGKLLALRQSF 155 (248)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~ 155 (248)
..+...+..++.. .+...|++++|||+++........++.++..+....... ....+.+.+... ....+...+.+++
T Consensus 168 ~~~~~~~~~~~~~-~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~l 245 (391)
T 1xti_A 168 LDMRRDVQEIFRM-TPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKL-KDNEKNRKLFDLL 245 (391)
T ss_dssp HHHHHHHHHHHHT-SCSSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCCCCCCCTTCEEEEEEC-CGGGHHHHHHHHH
T ss_pred cchHHHHHHHHhh-CCCCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCccccCcccceEEEEEc-CchhHHHHHHHHH
Confidence 3377777777776 456789999999999999999998988888776655433 334455555444 4556888888888
Q ss_pred hccCCCCEEEEecchHHHHHHHHHhhcCCCeeEEEecCCCHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCcEEEec
Q 042003 156 AESLNPPVLIFVQSKERAKELYGELAFDGIRAGVIHSDLSQTQRENAVDDFRAGKTWVLIATDVIARGMDFKGVNCVINY 235 (248)
Q Consensus 156 ~~~~~~~~liF~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gidip~~~~Vi~~ 235 (248)
....++++||||+++++++.+++.|++.++.+..+||+++.++|.++++.|++|+.+|||||+++++|+|+|++++||++
T Consensus 246 ~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~Vi~~ 325 (391)
T 1xti_A 246 DVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNY 325 (391)
T ss_dssp HHSCCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTEEEEEES
T ss_pred HhcCCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccCCEEEEe
Confidence 88778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcccceecC
Q 042003 236 DFPDSGAAYIHRI 248 (248)
Q Consensus 236 ~~p~~~~~~~qri 248 (248)
++|+|+..|+||+
T Consensus 326 ~~p~s~~~~~Qr~ 338 (391)
T 1xti_A 326 DMPEDSDTYLHRV 338 (391)
T ss_dssp SCCSSHHHHHHHH
T ss_pred CCCCCHHHHHHhc
Confidence 9999999999984
No 8
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=3e-38 Score=262.18 Aligned_cols=243 Identities=29% Similarity=0.413 Sum_probs=203.5
Q ss_pred CcchHHHHHHHhhcCCCcEEEEcccchh---hhcccccCCCcEEEeChHHHHHHHhcCCcccCceeEEEEeccccccccC
Q 042003 1 LATQTTRECKKLAKGNKFQIKLMKKELV---RSTDLSKFSCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEVG 77 (248)
Q Consensus 1 L~~Q~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~v~Tp~~l~~~~~~~~~~~~~~~~lIiDEah~~~~~~ 77 (248)
|+.|+++.++++.+..+ ..+....|+. ........+++|+|+||+++.+.+.+....+.+++++|+||||++.+.+
T Consensus 101 L~~q~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~ 179 (400)
T 1s2m_A 101 LALQTSQVVRTLGKHCG-ISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRD 179 (400)
T ss_dssp HHHHHHHHHHHHTTTTT-CCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHHHHSSHH
T ss_pred HHHHHHHHHHHHhcccC-ceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeCchHhhhhc
Confidence 57899999999998877 4444555554 2223345678999999999999998887888999999999999988776
Q ss_pred cccccchhHhhhCCCccceeEEEEeecCchHHHHHHHhcCCcEEEEEcccccccccceeEEEEcCCchhHHHHHHHHHhc
Q 042003 78 NLLKHIDPVVKACSNPSIVRSLFSATLPDFVEELARSIMHDAVRVIVGRKNTASESIKQKLVFAGSEEGKLLALRQSFAE 157 (248)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 157 (248)
+...+..+... .+...+++++|||+++.........+.++..+.... ......+.+.+... ....+...+..++..
T Consensus 180 -~~~~~~~i~~~-~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~k~~~l~~~~~~ 255 (400)
T 1s2m_A 180 -FKTIIEQILSF-LPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLME-ELTLKGITQYYAFV-EERQKLHCLNTLFSK 255 (400)
T ss_dssp -HHHHHHHHHTT-SCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCCS-SCBCTTEEEEEEEC-CGGGHHHHHHHHHHH
T ss_pred -hHHHHHHHHHh-CCcCceEEEEEecCCHHHHHHHHHHcCCCeEEEecc-ccccCCceeEEEEe-chhhHHHHHHHHHhh
Confidence 77777777776 456789999999999988888888888776654332 23334455555444 445688888888888
Q ss_pred cCCCCEEEEecchHHHHHHHHHhhcCCCeeEEEecCCCHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCcEEEeccC
Q 042003 158 SLNPPVLIFVQSKERAKELYGELAFDGIRAGVIHSDLSQTQRENAVDDFRAGKTWVLIATDVIARGMDFKGVNCVINYDF 237 (248)
Q Consensus 158 ~~~~~~liF~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gidip~~~~Vi~~~~ 237 (248)
...+++||||++++.++.+++.|++.++.+..+||+|+.++|..+++.|++|+.+|||||+++++|+|+|++++||++++
T Consensus 256 ~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~~Vi~~~~ 335 (400)
T 1s2m_A 256 LQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDF 335 (400)
T ss_dssp SCCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEEEEESSC
T ss_pred cCCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCCEEEEeCC
Confidence 77789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccceecC
Q 042003 238 PDSGAAYIHRI 248 (248)
Q Consensus 238 p~~~~~~~qri 248 (248)
|+|+..|+||+
T Consensus 336 p~s~~~~~Qr~ 346 (400)
T 1s2m_A 336 PKTAETYLHRI 346 (400)
T ss_dssp CSSHHHHHHHH
T ss_pred CCCHHHHHHhc
Confidence 99999999984
No 9
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=2.9e-39 Score=274.21 Aligned_cols=247 Identities=28% Similarity=0.359 Sum_probs=98.8
Q ss_pred CcchHHHHHHHhhcCCCcEEEEcccchhhhcccccCCCcEEEeChHHHHHHHhc-CCcccCceeEEEEeccccccccCcc
Q 042003 1 LATQTTRECKKLAKGNKFQIKLMKKELVRSTDLSKFSCDILISTPLRLRLAIRR-KKIDLSRVEYLVLDEADKLFEVGNL 79 (248)
Q Consensus 1 L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Tp~~l~~~~~~-~~~~~~~~~~lIiDEah~~~~~~~~ 79 (248)
||.|+++.++++.+..+...+....++.........+++|+|+||+++.+++.+ +.+.+.+++++|+||||++.+...+
T Consensus 174 La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEah~~~~~~~~ 253 (479)
T 3fmp_B 174 LALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGH 253 (479)
T ss_dssp HHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTTCCCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEECCHHHHHTSTTH
T ss_pred HHHHHHHHHHHHHhhCCCceEEEEeCCccccccccCCCCEEEECchHHHHHHHhcCCcCcccCCEEEEECHHHHhhcCCc
Confidence 688999999998876543455555555544444456789999999999999966 4567899999999999998874336
Q ss_pred cccchhHhhhCCCccceeEEEEeecCchHHHHHHHhcCCcEEEEEcccccccccceeEEEEcCCchhHHHHHHHHHhccC
Q 042003 80 LKHIDPVVKACSNPSIVRSLFSATLPDFVEELARSIMHDAVRVIVGRKNTASESIKQKLVFAGSEEGKLLALRQSFAESL 159 (248)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 159 (248)
...+..+.+. .+..+|++++|||++.........++.++..+...........+.+.+..+.....+...+..++....
T Consensus 254 ~~~~~~i~~~-~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 332 (479)
T 3fmp_B 254 QDQSIRIQRM-LPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNLYGAIT 332 (479)
T ss_dssp HHHHHHHHTT-SCTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC----------------------------------
T ss_pred HHHHHHHHhh-CCccceEEEEeCCCCHHHHHHHHHHcCCCeEEeccccccCcCCceEEEEEeCCHHHHHHHHHHHHhhcc
Confidence 6667777766 556799999999999999999999999998888887777777788888777777788888888888777
Q ss_pred CCCEEEEecchHHHHHHHHHhhcCCCeeEEEecCCCHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCcEEEeccCCC
Q 042003 160 NPPVLIFVQSKERAKELYGELAFDGIRAGVIHSDLSQTQRENAVDDFRAGKTWVLIATDVIARGMDFKGVNCVINYDFPD 239 (248)
Q Consensus 160 ~~~~liF~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gidip~~~~Vi~~~~p~ 239 (248)
.++++|||++++.++.+++.|...++.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|++++||+||+|.
T Consensus 333 ~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip~v~~VI~~d~p~ 412 (479)
T 3fmp_B 333 IAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPV 412 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCCccccCCEEEEecCCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999995
Q ss_pred ------CcccceecC
Q 042003 240 ------SGAAYIHRI 248 (248)
Q Consensus 240 ------~~~~~~qri 248 (248)
+...|+||+
T Consensus 413 ~~~~~~s~~~~~Qr~ 427 (479)
T 3fmp_B 413 DKDGNPDNETYLHRI 427 (479)
T ss_dssp ---------------
T ss_pred CCccCCCHHHHHHHh
Confidence 568999996
No 10
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=1.8e-39 Score=268.87 Aligned_cols=245 Identities=30% Similarity=0.432 Sum_probs=99.1
Q ss_pred CcchHHHHHHHhhcCCCcEEEEcccchhhh--cccccCCCcEEEeChHHHHHHHhcCCcccCceeEEEEeccccccccCc
Q 042003 1 LATQTTRECKKLAKGNKFQIKLMKKELVRS--TDLSKFSCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEVGN 78 (248)
Q Consensus 1 L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~v~Tp~~l~~~~~~~~~~~~~~~~lIiDEah~~~~~~~ 78 (248)
|+.|+++.++++....+ ..+....|+... ......+++|+|+||+++.+.+.++...+.+++++|+||||++.+++
T Consensus 101 L~~q~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiDEah~~~~~~- 178 (394)
T 1fuu_A 101 LALQIQKVVMALAFHMD-IKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSG- 178 (394)
T ss_dssp HHHHHHHHHHHHTTTSC-CCEEEECSSCCHHHHHHHHHHCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHTT-
T ss_pred HHHHHHHHHHHHhccCC-eeEEEEeCCCchHHHHhhcCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEEChHHhhCCC-
Confidence 57899999999988877 445555554421 11112268999999999999999888888999999999999998887
Q ss_pred ccccchhHhhhCCCccceeEEEEeecCchHHHHHHHhcCCcEEEEEcccccccccceeEEEEcCCchhHHHHHHHHHhcc
Q 042003 79 LLKHIDPVVKACSNPSIVRSLFSATLPDFVEELARSIMHDAVRVIVGRKNTASESIKQKLVFAGSEEGKLLALRQSFAES 158 (248)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 158 (248)
+...+..+... .+...|++++|||+++...+....++.++..+...........+.+.+......+.+...+..+++..
T Consensus 179 ~~~~~~~~~~~-~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 257 (394)
T 1fuu_A 179 FKEQIYQIFTL-LPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEEYKYECLTDLYDSI 257 (394)
T ss_dssp CHHHHHHHHHH-SCTTCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC--------------------------------
T ss_pred cHHHHHHHHHh-CCCCceEEEEEEecCHHHHHHHHHhcCCCeEEEecCccccCCCceEEEEEcCchhhHHHHHHHHHhcC
Confidence 77888888777 45678999999999998888888888888888777666666667777766666666778888888777
Q ss_pred CCCCEEEEecchHHHHHHHHHhhcCCCeeEEEecCCCHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCcEEEeccCC
Q 042003 159 LNPPVLIFVQSKERAKELYGELAFDGIRAGVIHSDLSQTQRENAVDDFRAGKTWVLIATDVIARGMDFKGVNCVINYDFP 238 (248)
Q Consensus 159 ~~~~~liF~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gidip~~~~Vi~~~~p 238 (248)
..++++|||++++.++.+++.|++.++.+..+||+++.++|.++++.|++|+.+|||||+++++|+|+|++++||++++|
T Consensus 258 ~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~~~~Vi~~~~p 337 (394)
T 1fuu_A 258 SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLP 337 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCcccCCEEEEeCCC
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccceecC
Q 042003 239 DSGAAYIHRI 248 (248)
Q Consensus 239 ~~~~~~~qri 248 (248)
+|+..|+||+
T Consensus 338 ~s~~~~~Qr~ 347 (394)
T 1fuu_A 338 ANKENYIHRI 347 (394)
T ss_dssp ----------
T ss_pred CCHHHHHHHc
Confidence 9999999995
No 11
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=4.7e-37 Score=251.95 Aligned_cols=239 Identities=33% Similarity=0.477 Sum_probs=198.2
Q ss_pred CcchHHHHHHHhhcCCCcEEEEcccchhhhc--ccccCCCcEEEeChHHHHHHHhcCCcccCceeEEEEeccccccccCc
Q 042003 1 LATQTTRECKKLAKGNKFQIKLMKKELVRST--DLSKFSCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEVGN 78 (248)
Q Consensus 1 L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~v~Tp~~l~~~~~~~~~~~~~~~~lIiDEah~~~~~~~ 78 (248)
|+.|+++.++++....+ ..+....|+.... .....+++|+|+||+++.+.+..+...+.+++++|+||||.+.+++
T Consensus 86 L~~q~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~~- 163 (367)
T 1hv8_A 86 LAIQVADEIESLKGNKN-LKIAKIYGGKAIYPQIKALKNANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLNMG- 163 (367)
T ss_dssp HHHHHHHHHHHHHCSSC-CCEEEECTTSCHHHHHHHHHTCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHHHHHTTT-
T ss_pred HHHHHHHHHHHHhCCCC-ceEEEEECCcchHHHHhhcCCCCEEEecHHHHHHHHHcCCcccccCCEEEEeCchHhhhhc-
Confidence 57899999999988776 4444455544211 1122378999999999999999888888999999999999998887
Q ss_pred ccccchhHhhhCCCccceeEEEEeecCchHHHHHHHhcCCcEEEEEcccccccccceeEEEEcCCchhHHHHHHHHHhcc
Q 042003 79 LLKHIDPVVKACSNPSIVRSLFSATLPDFVEELARSIMHDAVRVIVGRKNTASESIKQKLVFAGSEEGKLLALRQSFAES 158 (248)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 158 (248)
+...+..++.. .....+++++|||+++........++++...+..... ..+.+.+... ....+...+..++...
T Consensus 164 ~~~~~~~~~~~-~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~-~~~~~~~~l~~~l~~~ 237 (367)
T 1hv8_A 164 FIKDVEKILNA-CNKDKRILLFSATMPREILNLAKKYMGDYSFIKAKIN----ANIEQSYVEV-NENERFEALCRLLKNK 237 (367)
T ss_dssp THHHHHHHHHT-SCSSCEEEEECSSCCHHHHHHHHHHCCSEEEEECCSS----SSSEEEEEEC-CGGGHHHHHHHHHCST
T ss_pred hHHHHHHHHHh-CCCCceEEEEeeccCHHHHHHHHHHcCCCeEEEecCC----CCceEEEEEe-ChHHHHHHHHHHHhcC
Confidence 77777777776 4567899999999999888888888777655543222 2344444443 4556888888888744
Q ss_pred CCCCEEEEecchHHHHHHHHHhhcCCCeeEEEecCCCHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCcEEEeccCC
Q 042003 159 LNPPVLIFVQSKERAKELYGELAFDGIRAGVIHSDLSQTQRENAVDDFRAGKTWVLIATDVIARGMDFKGVNCVINYDFP 238 (248)
Q Consensus 159 ~~~~~liF~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gidip~~~~Vi~~~~p 238 (248)
+.+++|||++++.++.+++.|++.++++..+||+++.++|.++++.|++|+.+|||||+++++|+|+|++++||++++|
T Consensus 238 -~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~ 316 (367)
T 1hv8_A 238 -EFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVINYHLP 316 (367)
T ss_dssp -TCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSEEEESSCC
T ss_pred -CCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCCEEEEecCC
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccceecC
Q 042003 239 DSGAAYIHRI 248 (248)
Q Consensus 239 ~~~~~~~qri 248 (248)
+|+.+|+||+
T Consensus 317 ~s~~~~~Q~~ 326 (367)
T 1hv8_A 317 QNPESYMHRI 326 (367)
T ss_dssp SCHHHHHHHS
T ss_pred CCHHHhhhcc
Confidence 9999999985
No 12
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2e-37 Score=264.28 Aligned_cols=245 Identities=29% Similarity=0.399 Sum_probs=186.1
Q ss_pred CcchHHHHHHHhhcCCCcEEEEcccchhhhcccccCCCcEEEeChHHHHHHHhcCCcccCceeEEEEeccccccccCccc
Q 042003 1 LATQTTRECKKLAKGNKFQIKLMKKELVRSTDLSKFSCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEVGNLL 80 (248)
Q Consensus 1 L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Tp~~l~~~~~~~~~~~~~~~~lIiDEah~~~~~~~~~ 80 (248)
|+.|+++.+++++...+.. +....++... .....+++|+|+||+++.+.+.++...+.+++++|+||||++.+...+.
T Consensus 201 L~~Q~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIiDEaH~~~~~~~~~ 278 (508)
T 3fho_A 201 LARQIMDVVTEMGKYTEVK-TAFGIKDSVP-KGAKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQGLG 278 (508)
T ss_dssp HHHHHHHHHHHHSTTSSCC-EEC-----------CCCCSEEEECHHHHHHHHHTTCSCCTTCCEEEECCHHHHTTC--CH
T ss_pred HHHHHHHHHHHhCCccCee-EEEEeCCccc-ccccCCCCEEEECHHHHHHHHHcCCccccCCCEEEEechhhhcccCCcH
Confidence 6789999999998877733 3333333322 2223478999999999999999888889999999999999988743377
Q ss_pred ccchhHhhhCCCccceeEEEEeecCchHHHHHHHhcCCcEEEEEcccccccccceeEEEEcCCchhHHHHHHHHHhccCC
Q 042003 81 KHIDPVVKACSNPSIVRSLFSATLPDFVEELARSIMHDAVRVIVGRKNTASESIKQKLVFAGSEEGKLLALRQSFAESLN 160 (248)
Q Consensus 81 ~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 160 (248)
..+..+... .+...|++++|||+++........+..++..+...........+.+.+........+...+..++....+
T Consensus 279 ~~~~~i~~~-~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~ 357 (508)
T 3fho_A 279 DQSMRIKHL-LPRNTQIVLFSATFSERVEKYAERFAPNANEIRLKTEELSVEGIKQLYMDCQSEEHKYNVLVELYGLLTI 357 (508)
T ss_dssp HHHHHHHHH-SCTTCEEEEEESCCSTHHHHHHHHHSTTCEEECCCCCC----CCCCEEEEC--CHHHHHHHHHHHC---C
T ss_pred HHHHHHHHh-CCcCCeEEEEeCCCCHHHHHHHHHhcCCCeEEEeccccCCcccceEEEEECCchHHHHHHHHHHHHhcCC
Confidence 777777777 4567899999999999899999999888888777666666677778888888888899999999988878
Q ss_pred CCEEEEecchHHHHHHHHHhhcCCCeeEEEecCCCHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCcEEEeccCC--
Q 042003 161 PPVLIFVQSKERAKELYGELAFDGIRAGVIHSDLSQTQRENAVDDFRAGKTWVLIATDVIARGMDFKGVNCVINYDFP-- 238 (248)
Q Consensus 161 ~~~liF~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gidip~~~~Vi~~~~p-- 238 (248)
+++||||+++++++.+++.|.+.+..+..+||+++..+|+.+++.|++|+.+|||||+++++|+|+|++++||++++|
T Consensus 358 ~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~GiDip~v~~VI~~~~p~~ 437 (508)
T 3fho_A 358 GQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVNYDMPLD 437 (508)
T ss_dssp CCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----CCCTTCCEEEC----CC
T ss_pred CcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCCCccCCCEEEEECCCCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ----CCcccceecC
Q 042003 239 ----DSGAAYIHRI 248 (248)
Q Consensus 239 ----~~~~~~~qri 248 (248)
.|+..|+||+
T Consensus 438 ~~~~~s~~~~~Qr~ 451 (508)
T 3fho_A 438 QAGRPDPQTYLHRI 451 (508)
T ss_dssp -----CTHHHHHTT
T ss_pred ccCCCCHHHHHHHh
Confidence 7899999986
No 13
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=5.1e-37 Score=265.80 Aligned_cols=247 Identities=30% Similarity=0.379 Sum_probs=190.8
Q ss_pred CcchHHHHHHHhhcC---CCcEEEEcccchhh----hcccccCCCcEEEeChHHHHHHHhcC-CcccCceeEEEEecccc
Q 042003 1 LATQTTRECKKLAKG---NKFQIKLMKKELVR----STDLSKFSCDILISTPLRLRLAIRRK-KIDLSRVEYLVLDEADK 72 (248)
Q Consensus 1 L~~Q~~~~~~~~~~~---~~~~~~~~~~~~~~----~~~~~~~~~~i~v~Tp~~l~~~~~~~-~~~~~~~~~lIiDEah~ 72 (248)
||.|+++.++++... .....+....|+.. .......+++|+|+||+++.+.+... ...+++++++|+||||+
T Consensus 107 La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~ 186 (579)
T 3sqw_A 107 LALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADR 186 (579)
T ss_dssp HHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHH
T ss_pred HHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccccCCEEEEEChHH
Confidence 688999999987632 11133444444442 12223447999999999999988764 44678899999999999
Q ss_pred ccccCcccccchhHhhhCC------CccceeEEEEeecCchHHHHHHHhcCCcEEEEEccc----ccccccceeEEEEcC
Q 042003 73 LFEVGNLLKHIDPVVKACS------NPSIVRSLFSATLPDFVEELARSIMHDAVRVIVGRK----NTASESIKQKLVFAG 142 (248)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~------~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 142 (248)
+.+++ |...+..+...+. ...+|++++|||+++....+..+++.++..+..... ......+.+......
T Consensus 187 l~~~g-f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 265 (579)
T 3sqw_A 187 LLEIG-FRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISE 265 (579)
T ss_dssp HTSTT-THHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEES
T ss_pred hhcCC-CHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCccccccccccceEEEEec
Confidence 99998 8887777765532 236799999999999989999888888776654432 222334455555555
Q ss_pred CchhHH----HHHHHHHhc-cCCCCEEEEecchHHHHHHHHHhhcC---CCeeEEEecCCCHHHHHHHHHHhhcCCceEE
Q 042003 143 SEEGKL----LALRQSFAE-SLNPPVLIFVQSKERAKELYGELAFD---GIRAGVIHSDLSQTQRENAVDDFRAGKTWVL 214 (248)
Q Consensus 143 ~~~~~~----~~l~~~~~~-~~~~~~liF~~~~~~~~~l~~~L~~~---~~~v~~~~~~~~~~~r~~~~~~f~~g~~~il 214 (248)
....+. ..+...+.. ..+.++||||++++.++.+++.|++. ++.+..+||+|++++|..+++.|++|+.+||
T Consensus 266 ~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vL 345 (579)
T 3sqw_A 266 KFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGIL 345 (579)
T ss_dssp STTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEE
T ss_pred chhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcCCCeEE
Confidence 433332 333333333 44679999999999999999999876 8999999999999999999999999999999
Q ss_pred EEecccccCCCCCCCcEEEeccCCCCcccceecC
Q 042003 215 IATDVIARGMDFKGVNCVINYDFPDSGAAYIHRI 248 (248)
Q Consensus 215 v~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~qri 248 (248)
|||+++++|+|+|++++||++++|.++..|+||+
T Consensus 346 VaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~ 379 (579)
T 3sqw_A 346 VCTDVGARGMDFPNVHEVLQIGVPSELANYIHRI 379 (579)
T ss_dssp EECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHH
T ss_pred EEcchhhcCCCcccCCEEEEcCCCCCHHHhhhhc
Confidence 9999999999999999999999999999999985
No 14
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=1.1e-36 Score=263.21 Aligned_cols=247 Identities=30% Similarity=0.386 Sum_probs=189.9
Q ss_pred CcchHHHHHHHhhcC---CCcEEEEcccchhh----hcccccCCCcEEEeChHHHHHHHhcC-CcccCceeEEEEecccc
Q 042003 1 LATQTTRECKKLAKG---NKFQIKLMKKELVR----STDLSKFSCDILISTPLRLRLAIRRK-KIDLSRVEYLVLDEADK 72 (248)
Q Consensus 1 L~~Q~~~~~~~~~~~---~~~~~~~~~~~~~~----~~~~~~~~~~i~v~Tp~~l~~~~~~~-~~~~~~~~~lIiDEah~ 72 (248)
||.|+++.++++... .....+....|+.. .......+++|+|+||+++.+.+.+. ...+++++++|+||||+
T Consensus 158 La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~ 237 (563)
T 3i5x_A 158 LALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADR 237 (563)
T ss_dssp HHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHH
T ss_pred HHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEEeCHHH
Confidence 688999999987542 11123344444442 12223457999999999999988764 34578899999999999
Q ss_pred ccccCcccccchhHhhhCC------CccceeEEEEeecCchHHHHHHHhcCCcEEEEEccc----ccccccceeEEEEcC
Q 042003 73 LFEVGNLLKHIDPVVKACS------NPSIVRSLFSATLPDFVEELARSIMHDAVRVIVGRK----NTASESIKQKLVFAG 142 (248)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~------~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 142 (248)
+.+++ |...+..+...+. ...+|++++|||+++....+..+++.++..+..... ......+.+.+....
T Consensus 238 l~~~~-f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (563)
T 3i5x_A 238 LLEIG-FRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISE 316 (563)
T ss_dssp HTSTT-THHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEES
T ss_pred Hhccc-hHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCccccccCceEEEECc
Confidence 99998 8887777755431 246799999999999889998888888766654322 222334445555554
Q ss_pred CchhHHH----HHHHHHhc-cCCCCEEEEecchHHHHHHHHHhhcC---CCeeEEEecCCCHHHHHHHHHHhhcCCceEE
Q 042003 143 SEEGKLL----ALRQSFAE-SLNPPVLIFVQSKERAKELYGELAFD---GIRAGVIHSDLSQTQRENAVDDFRAGKTWVL 214 (248)
Q Consensus 143 ~~~~~~~----~l~~~~~~-~~~~~~liF~~~~~~~~~l~~~L~~~---~~~v~~~~~~~~~~~r~~~~~~f~~g~~~il 214 (248)
....+.. .+...+.. ..+.++||||++++.++.+++.|++. ++.+..+||+|++.+|..+++.|++|+.+||
T Consensus 317 ~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vL 396 (563)
T 3i5x_A 317 KFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGIL 396 (563)
T ss_dssp STTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEE
T ss_pred hhHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCCCEE
Confidence 4433332 23333332 44679999999999999999999876 8999999999999999999999999999999
Q ss_pred EEecccccCCCCCCCcEEEeccCCCCcccceecC
Q 042003 215 IATDVIARGMDFKGVNCVINYDFPDSGAAYIHRI 248 (248)
Q Consensus 215 v~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~qri 248 (248)
|||+++++|+|+|++++||++++|.|+..|+||+
T Consensus 397 vaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~ 430 (563)
T 3i5x_A 397 VCTDVGARGMDFPNVHEVLQIGVPSELANYIHRI 430 (563)
T ss_dssp EECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHH
T ss_pred EEcchhhcCCCcccCCEEEEECCCCchhhhhhhc
Confidence 9999999999999999999999999999999985
No 15
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=4.9e-36 Score=243.27 Aligned_cols=235 Identities=27% Similarity=0.405 Sum_probs=190.3
Q ss_pred CcchHHHHHHHhhcCCCcEEEEcccchhhhc--ccccCCCcEEEeChHHHHHHHhcCCcccCceeEEEEeccccccccCc
Q 042003 1 LATQTTRECKKLAKGNKFQIKLMKKELVRST--DLSKFSCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEVGN 78 (248)
Q Consensus 1 L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~v~Tp~~l~~~~~~~~~~~~~~~~lIiDEah~~~~~~~ 78 (248)
|+.|+++.++++++..+ ..+....|+.... .....+++|+|+||+++.+.+..+...+.+++++|+||||++.+++
T Consensus 68 L~~q~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~- 145 (337)
T 2z0m_A 68 LTRQVASHIRDIGRYMD-TKVAEVYGGMPYKAQINRVRNADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMG- 145 (337)
T ss_dssp HHHHHHHHHHHHTTTSC-CCEEEECTTSCHHHHHHHHTTCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHHTT-
T ss_pred HHHHHHHHHHHHhhhcC-CcEEEEECCcchHHHHhhcCCCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhccc-
Confidence 57899999999988877 4455555554211 1122359999999999999998887788999999999999998887
Q ss_pred ccccchhHhhhCCCccceeEEEEeecCchHHHHHHHhcCCcEEEEEcccccccccceeEEEEcCCchhHHHHHHHHHhcc
Q 042003 79 LLKHIDPVVKACSNPSIVRSLFSATLPDFVEELARSIMHDAVRVIVGRKNTASESIKQKLVFAGSEEGKLLALRQSFAES 158 (248)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 158 (248)
+...+..++.. .+...+++++|||+++........++.++..+... .....+.+.+......... ....+...
T Consensus 146 ~~~~~~~~~~~-~~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 218 (337)
T 2z0m_A 146 FIDDIKIILAQ-TSNRKITGLFSATIPEEIRKVVKDFITNYEEIEAC---IGLANVEHKFVHVKDDWRS---KVQALREN 218 (337)
T ss_dssp CHHHHHHHHHH-CTTCSEEEEEESCCCHHHHHHHHHHSCSCEEEECS---GGGGGEEEEEEECSSSSHH---HHHHHHTC
T ss_pred cHHHHHHHHhh-CCcccEEEEEeCcCCHHHHHHHHHhcCCceeeecc---cccCCceEEEEEeChHHHH---HHHHHHhC
Confidence 77778877777 45677889999999998888888888777655322 2334455555555544322 22445555
Q ss_pred CCCCEEEEecchHHHHHHHHHhhcCCCeeEEEecCCCHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCcEEEeccCC
Q 042003 159 LNPPVLIFVQSKERAKELYGELAFDGIRAGVIHSDLSQTQRENAVDDFRAGKTWVLIATDVIARGMDFKGVNCVINYDFP 238 (248)
Q Consensus 159 ~~~~~liF~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gidip~~~~Vi~~~~p 238 (248)
.+++++|||+++++++.+++.|+ ++..+||+++.++|.++++.|++|+.+|||||+++++|+|+|++++||++++|
T Consensus 219 ~~~~~lvf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~ 294 (337)
T 2z0m_A 219 KDKGVIVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDAP 294 (337)
T ss_dssp CCSSEEEECSCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESSCC
T ss_pred CCCcEEEEEcCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEecCC
Confidence 67899999999999999999997 68899999999999999999999999999999999999999999999999999
Q ss_pred CCcccceecC
Q 042003 239 DSGAAYIHRI 248 (248)
Q Consensus 239 ~~~~~~~qri 248 (248)
+|+..|+||+
T Consensus 295 ~s~~~~~Q~~ 304 (337)
T 2z0m_A 295 QDLRTYIHRI 304 (337)
T ss_dssp SSHHHHHHHH
T ss_pred CCHHHhhHhc
Confidence 9999999984
No 16
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=4.4e-35 Score=252.60 Aligned_cols=241 Identities=17% Similarity=0.170 Sum_probs=178.5
Q ss_pred CcchHHHHHHHhhcCCCcEEEEcccchhhhcc-------c--ccCCCcEEEeChHHHHH---HHh--cCCcccCceeEEE
Q 042003 1 LATQTTRECKKLAKGNKFQIKLMKKELVRSTD-------L--SKFSCDILISTPLRLRL---AIR--RKKIDLSRVEYLV 66 (248)
Q Consensus 1 L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~--~~~~~~i~v~Tp~~l~~---~~~--~~~~~~~~~~~lI 66 (248)
|+.|+.+.++++ + ..+..+.|+..... . ....++|+|+||+++.. ++. .....+.+++++|
T Consensus 96 L~~q~~~~l~~~----g-i~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~~~~i~~iV 170 (591)
T 2v1x_A 96 LMEDQLMVLKQL----G-ISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIA 170 (591)
T ss_dssp HHHHHHHHHHHH----T-CCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHhc----C-CcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHhhhhccCCcEEE
Confidence 567888888887 3 23444454441111 1 34679999999998742 221 1233467899999
Q ss_pred EeccccccccC-cccccchhH--hhhCCCccceeEEEEeecCchHHHHHHHhcCCcEEEEEcccccccccceeEEEEcCC
Q 042003 67 LDEADKLFEVG-NLLKHIDPV--VKACSNPSIVRSLFSATLPDFVEELARSIMHDAVRVIVGRKNTASESIKQKLVFAGS 143 (248)
Q Consensus 67 iDEah~~~~~~-~~~~~~~~~--~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (248)
+||||++.+|| +|+..+..+ +.. ..+..+++++|||+++........++..+....... ....+++...+.....
T Consensus 171 iDEAH~is~~g~dfr~~~~~l~~l~~-~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~-~~~r~nl~~~v~~~~~ 248 (591)
T 2v1x_A 171 VDEVHCCSQWGHDFRPDYKALGILKR-QFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTA-SFNRPNLYYEVRQKPS 248 (591)
T ss_dssp EETGGGGSTTCTTCCGGGGGGGHHHH-HCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEEC-CCCCTTEEEEEEECCS
T ss_pred EECcccccccccccHHHHHHHHHHHH-hCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEec-CCCCcccEEEEEeCCC
Confidence 99999999886 366655442 222 224688999999999987777666655443222211 2223334333333222
Q ss_pred -chhHHHHHHHHHhcc-CCCCEEEEecchHHHHHHHHHhhcCCCeeEEEecCCCHHHHHHHHHHhhcCCceEEEEecccc
Q 042003 144 -EEGKLLALRQSFAES-LNPPVLIFVQSKERAKELYGELAFDGIRAGVIHSDLSQTQRENAVDDFRAGKTWVLIATDVIA 221 (248)
Q Consensus 144 -~~~~~~~l~~~~~~~-~~~~~liF~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~ 221 (248)
...+...+.+++... .++++||||++++.++.+++.|+..++.+..+||+|++++|..+++.|.+|+.+|||||++++
T Consensus 249 ~~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a~~ 328 (591)
T 2v1x_A 249 NTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFG 328 (591)
T ss_dssp SHHHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTTSC
T ss_pred cHHHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhh
Confidence 345667777777643 468999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCcEEEeccCCCCcccceecC
Q 042003 222 RGMDFKGVNCVINYDFPDSGAAYIHRI 248 (248)
Q Consensus 222 ~Gidip~~~~Vi~~~~p~~~~~~~qri 248 (248)
+|||+|++++||++++|.|+..|+||+
T Consensus 329 ~GID~p~V~~VI~~~~p~s~~~y~Qr~ 355 (591)
T 2v1x_A 329 MGIDKPDVRFVIHHSMSKSMENYYQES 355 (591)
T ss_dssp TTCCCSCEEEEEESSCCSSHHHHHHHH
T ss_pred cCCCcccccEEEEeCCCCCHHHHHHHh
Confidence 999999999999999999999999984
No 17
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=1.8e-34 Score=246.33 Aligned_cols=235 Identities=17% Similarity=0.221 Sum_probs=173.9
Q ss_pred CcchHHHHHHHhhcCCCcEEEEcccchhh-------hcccccCCCcEEEeChHHHHHHHhcCCcccCceeEEEEeccccc
Q 042003 1 LATQTTRECKKLAKGNKFQIKLMKKELVR-------STDLSKFSCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKL 73 (248)
Q Consensus 1 L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~i~v~Tp~~l~~~~~~~~~~~~~~~~lIiDEah~~ 73 (248)
|+.|+.+.++++ + ..+..+.++.. ......+.++|+++||+++......+.+...+++++|+||||++
T Consensus 77 L~~q~~~~l~~~----g-i~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViDEaH~i 151 (523)
T 1oyw_A 77 LMKDQVDQLQAN----G-VAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCI 151 (523)
T ss_dssp HHHHHHHHHHHT----T-CCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGGGG
T ss_pred HHHHHHHHHHHc----C-CcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEEeCcccc
Confidence 456777777765 2 22333334331 12233456999999999986433333344578999999999999
Q ss_pred cccC-ccccc---chhHhhhCCCccceeEEEEeecCchHHHH-HHHhc-CCcEEEEEcccccccccceeEEEEcCCchhH
Q 042003 74 FEVG-NLLKH---IDPVVKACSNPSIVRSLFSATLPDFVEEL-ARSIM-HDAVRVIVGRKNTASESIKQKLVFAGSEEGK 147 (248)
Q Consensus 74 ~~~~-~~~~~---~~~~~~~~~~~~~~~i~~SAT~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (248)
.+|| .|+.. +..+...+ +..+++++|||+++..... ...+. .++... ..... .+++..... ....+
T Consensus 152 ~~~g~~fr~~~~~l~~l~~~~--~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~-~~~~~--r~~l~~~v~---~~~~~ 223 (523)
T 1oyw_A 152 SQWGHDFRPEYAALGQLRQRF--PTLPFMALTATADDTTRQDIVRLLGLNDPLIQ-ISSFD--RPNIRYMLM---EKFKP 223 (523)
T ss_dssp CTTSSCCCHHHHGGGGHHHHC--TTSCEEEEESCCCHHHHHHHHHHHTCCSCEEE-ECCCC--CTTEEEEEE---ECSSH
T ss_pred CcCCCccHHHHHHHHHHHHhC--CCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEE-eCCCC--CCceEEEEE---eCCCH
Confidence 9887 34443 33344442 4578999999999876553 33342 334333 22222 233333222 23456
Q ss_pred HHHHHHHHhccCCCCEEEEecchHHHHHHHHHhhcCCCeeEEEecCCCHHHHHHHHHHhhcCCceEEEEecccccCCCCC
Q 042003 148 LLALRQSFAESLNPPVLIFVQSKERAKELYGELAFDGIRAGVIHSDLSQTQRENAVDDFRAGKTWVLIATDVIARGMDFK 227 (248)
Q Consensus 148 ~~~l~~~~~~~~~~~~liF~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gidip 227 (248)
...+.+++....++++||||++++.++.+++.|++.++.+..+||+|+.++|..+++.|++|+.+|||||+++++|+|+|
T Consensus 224 ~~~l~~~l~~~~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~GiD~p 303 (523)
T 1oyw_A 224 LDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKP 303 (523)
T ss_dssp HHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTTTCCT
T ss_pred HHHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhCCCCcc
Confidence 77788888877678999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEeccCCCCcccceecC
Q 042003 228 GVNCVINYDFPDSGAAYIHRI 248 (248)
Q Consensus 228 ~~~~Vi~~~~p~~~~~~~qri 248 (248)
++++||++++|.|+..|+||+
T Consensus 304 ~v~~VI~~~~p~s~~~y~Qr~ 324 (523)
T 1oyw_A 304 NVRFVVHFDIPRNIESYYQET 324 (523)
T ss_dssp TCCEEEESSCCSSHHHHHHHH
T ss_pred CccEEEEECCCCCHHHHHHHh
Confidence 999999999999999999984
No 18
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=1.5e-34 Score=249.44 Aligned_cols=247 Identities=15% Similarity=0.102 Sum_probs=135.8
Q ss_pred CcchHHHHHHHhhcCCCcEEEEcccchhh---hcccccCCCcEEEeChHHHHHHHhcCCc-ccCceeEEEEecccccccc
Q 042003 1 LATQTTRECKKLAKGNKFQIKLMKKELVR---STDLSKFSCDILISTPLRLRLAIRRKKI-DLSRVEYLVLDEADKLFEV 76 (248)
Q Consensus 1 L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~v~Tp~~l~~~~~~~~~-~~~~~~~lIiDEah~~~~~ 76 (248)
|+.|+.+.++++.+..+ ..+..+.|+.. .......+++|+|+||+++.+.+..+.. .+.+++++|+||||++.++
T Consensus 67 L~~q~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~ 145 (556)
T 4a2p_A 67 VYEQQKNVFKHHFERQG-YSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGN 145 (556)
T ss_dssp HHHHHHHHHHHHHGGGT-CCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTT
T ss_pred HHHHHHHHHHHHhcccC-ceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCc
Confidence 67899999999988777 44555666552 2223445799999999999999988877 7899999999999999887
Q ss_pred CcccccchhHhhhC---CCccceeEEEEeecCch-----------HHHHHHHhc------------------CCcEEEEE
Q 042003 77 GNLLKHIDPVVKAC---SNPSIVRSLFSATLPDF-----------VEELARSIM------------------HDAVRVIV 124 (248)
Q Consensus 77 ~~~~~~~~~~~~~~---~~~~~~~i~~SAT~~~~-----------~~~~~~~~~------------------~~~~~~~~ 124 (248)
+.+...+....... ..+..+++++|||++.. ...+...+. ..+.....
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (556)
T 4a2p_A 146 HPYNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVR 225 (556)
T ss_dssp SHHHHHHHHHHHHHHCC---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEEE
T ss_pred chHHHHHHHHHHhhhcccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCCceEEE
Confidence 74433333333221 13568899999998531 111111111 11111110
Q ss_pred cccccccccce---------------e----------------------EE-----------------------------
Q 042003 125 GRKNTASESIK---------------Q----------------------KL----------------------------- 138 (248)
Q Consensus 125 ~~~~~~~~~~~---------------~----------------------~~----------------------------- 138 (248)
........... . +.
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (556)
T 4a2p_A 226 LVKRRIHNPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICT 305 (556)
T ss_dssp ECCCCSCCHHHHHHHHHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHH
T ss_pred EcCCCcCChHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHH
Confidence 00000000000 0 00
Q ss_pred -----------------------------------------------------------EEcCCchhHHHHHHHHHhc--
Q 042003 139 -----------------------------------------------------------VFAGSEEGKLLALRQSFAE-- 157 (248)
Q Consensus 139 -----------------------------------------------------------~~~~~~~~~~~~l~~~~~~-- 157 (248)
........|...+.+++..
T Consensus 306 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~ 385 (556)
T 4a2p_A 306 EHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAY 385 (556)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHh
Confidence 0000113455556666643
Q ss_pred --cCCCCEEEEecchHHHHHHHHHhhcC------------CCeeEEEecCCCHHHHHHHHHHhhc-CCceEEEEeccccc
Q 042003 158 --SLNPPVLIFVQSKERAKELYGELAFD------------GIRAGVIHSDLSQTQRENAVDDFRA-GKTWVLIATDVIAR 222 (248)
Q Consensus 158 --~~~~~~liF~~~~~~~~~l~~~L~~~------------~~~v~~~~~~~~~~~r~~~~~~f~~-g~~~ilv~T~~~~~ 222 (248)
..+.++||||+++..++.+++.|++. |.....+||+|+.++|.++++.|++ |+.+|||||+++++
T Consensus 386 ~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~ 465 (556)
T 4a2p_A 386 RYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADE 465 (556)
T ss_dssp HHCTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC----
T ss_pred cCCCCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhc
Confidence 34689999999999999999999875 4556667888999999999999999 99999999999999
Q ss_pred CCCCCCCcEEEeccCCCCcccceecC
Q 042003 223 GMDFKGVNCVINYDFPDSGAAYIHRI 248 (248)
Q Consensus 223 Gidip~~~~Vi~~~~p~~~~~~~qri 248 (248)
|+|+|++++||+||+|+|+.+|+||+
T Consensus 466 GiDip~v~~VI~~d~p~s~~~~~Qr~ 491 (556)
T 4a2p_A 466 GIDIVQCNLVVLYEYSGNVTKMIQVR 491 (556)
T ss_dssp -------CEEEEETCCSCHHHHHHC-
T ss_pred CCCchhCCEEEEeCCCCCHHHHHHhc
Confidence 99999999999999999999999996
No 19
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=4e-33 Score=240.29 Aligned_cols=245 Identities=17% Similarity=0.141 Sum_probs=151.0
Q ss_pred CcchHHHHHHHhhcCCCcEEEEcccchhhhc---ccccCCCcEEEeChHHHHHHHhcCCc-ccCceeEEEEecccccccc
Q 042003 1 LATQTTRECKKLAKGNKFQIKLMKKELVRST---DLSKFSCDILISTPLRLRLAIRRKKI-DLSRVEYLVLDEADKLFEV 76 (248)
Q Consensus 1 L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~v~Tp~~l~~~~~~~~~-~~~~~~~lIiDEah~~~~~ 76 (248)
|+.|+.+.++++.+..+ ..+..+.|+.... .....+++|+|+||+++.+.+..+.. .+.+++++|+||||++.+.
T Consensus 64 L~~q~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~ 142 (555)
T 3tbk_A 64 VYEQQATVFSRYFERLG-YNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKN 142 (555)
T ss_dssp HHHHHHHHHHHHHHTTT-CCEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTT
T ss_pred HHHHHHHHHHHHhccCC-cEEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCc
Confidence 67899999999998777 4455566655222 23445699999999999999988777 7899999999999999887
Q ss_pred CcccccchhHhhhC----CCccceeEEEEeecCch-----------HHHHHHHhcCCcEEEEEcccc-----ccccccee
Q 042003 77 GNLLKHIDPVVKAC----SNPSIVRSLFSATLPDF-----------VEELARSIMHDAVRVIVGRKN-----TASESIKQ 136 (248)
Q Consensus 77 ~~~~~~~~~~~~~~----~~~~~~~i~~SAT~~~~-----------~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 136 (248)
+.+...+...+... .....+++++|||++.. ...+...+ ... .+...... ........
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l-~~~-~~~~~~~~~~~l~~~~~~~~~ 220 (555)
T 3tbk_A 143 HPYNQIMFRYLDHKLGESRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAAL-DAS-VIATVRDNVAELEQVVYKPQK 220 (555)
T ss_dssp CHHHHHHHHHHHHHTSSCCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHT-TCS-EEECCCSCHHHHHTTCCCCCE
T ss_pred chHHHHHHHHHHhhhccccCCCCeEEEEecCcccCccccHHHHHHHHHHHHHhc-CCe-eeeccccCHHHHHhhcCCCce
Confidence 64444444443331 12557999999999542 11111111 111 11110000 00000000
Q ss_pred EEEEc---------------------------------------------------------------------------
Q 042003 137 KLVFA--------------------------------------------------------------------------- 141 (248)
Q Consensus 137 ~~~~~--------------------------------------------------------------------------- 141 (248)
.....
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (555)
T 3tbk_A 221 ISRKVASRTSNTFKCIISQLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKAL 300 (555)
T ss_dssp EEEECCCCSCCHHHHHHHHHHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHH
T ss_pred EEEEecCcccChHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHH
Confidence 00000
Q ss_pred ------------------------------------------------------------------CCchhHHHHHHHHH
Q 042003 142 ------------------------------------------------------------------GSEEGKLLALRQSF 155 (248)
Q Consensus 142 ------------------------------------------------------------------~~~~~~~~~l~~~~ 155 (248)
.....|...+.+++
T Consensus 301 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l 380 (555)
T 3tbk_A 301 FLYTSHLRKYNDALIISEDAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVL 380 (555)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHH
Confidence 01134555555555
Q ss_pred hc----cCCCCEEEEecchHHHHHHHHHhhcCC------------CeeEEEecCCCHHHHHHHHHHhhc-CCceEEEEec
Q 042003 156 AE----SLNPPVLIFVQSKERAKELYGELAFDG------------IRAGVIHSDLSQTQRENAVDDFRA-GKTWVLIATD 218 (248)
Q Consensus 156 ~~----~~~~~~liF~~~~~~~~~l~~~L~~~~------------~~v~~~~~~~~~~~r~~~~~~f~~-g~~~ilv~T~ 218 (248)
.. ..+.++||||+++..++.+++.|+..+ .+...+||+|++++|.++++.|++ |+.+|||||+
T Consensus 381 ~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~ 460 (555)
T 3tbk_A 381 QEEYHLKPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATS 460 (555)
T ss_dssp HHHHHHCTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECC
T ss_pred HHHhccCCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcc
Confidence 43 346899999999999999999998763 344555679999999999999999 9999999999
Q ss_pred ccccCCCCCCCcEEEeccCCCCcccceecC
Q 042003 219 VIARGMDFKGVNCVINYDFPDSGAAYIHRI 248 (248)
Q Consensus 219 ~~~~Gidip~~~~Vi~~~~p~~~~~~~qri 248 (248)
++++|+|+|++++||+||+|+|+.+|+||+
T Consensus 461 ~~~~GlDlp~v~~VI~~d~p~s~~~~~Qr~ 490 (555)
T 3tbk_A 461 VADEGIDIAECNLVILYEYVGNVIKMIQTR 490 (555)
T ss_dssp CTTCCEETTSCSEEEEESCCSSCCCEECSS
T ss_pred hhhcCCccccCCEEEEeCCCCCHHHHHHhc
Confidence 999999999999999999999999999996
No 20
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=4.1e-34 Score=252.82 Aligned_cols=247 Identities=18% Similarity=0.208 Sum_probs=149.1
Q ss_pred CcchHHHHHHHhhcCCCcEEEEcccchh---hhcccccCCCcEEEeChHHHHHHHhcCCc-ccCceeEEEEecccccccc
Q 042003 1 LATQTTRECKKLAKGNKFQIKLMKKELV---RSTDLSKFSCDILISTPLRLRLAIRRKKI-DLSRVEYLVLDEADKLFEV 76 (248)
Q Consensus 1 L~~Q~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~v~Tp~~l~~~~~~~~~-~~~~~~~lIiDEah~~~~~ 76 (248)
|+.|+.+.++++++..+ ..+..+.|+. .+......+++|+|+||++|.+.+..+.+ .+.+++++|+||||++.+.
T Consensus 73 L~~Q~~~~~~~~~~~~~-~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~ 151 (696)
T 2ykg_A 73 VYEQNKSVFSKYFERHG-YRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQ 151 (696)
T ss_dssp HHHHHHHHHHHHTTTTT-CCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTT
T ss_pred HHHHHHHHHHHHhccCC-ceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCc
Confidence 57899999999998777 4455555654 22233345799999999999999998776 7899999999999999876
Q ss_pred CcccccchhHhhh----CCCccceeEEEEeecCc-------h-HHHHHHH---------------------hcCCcEEEE
Q 042003 77 GNLLKHIDPVVKA----CSNPSIVRSLFSATLPD-------F-VEELARS---------------------IMHDAVRVI 123 (248)
Q Consensus 77 ~~~~~~~~~~~~~----~~~~~~~~i~~SAT~~~-------~-~~~~~~~---------------------~~~~~~~~~ 123 (248)
..+...+...+.. ......++++||||+.. . ...+... +...|....
T Consensus 152 ~~~~~i~~~~l~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~ 231 (696)
T 2ykg_A 152 HPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFF 231 (696)
T ss_dssp CHHHHHHHHHHHHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEE
T ss_pred ccHHHHHHHHHHHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeE
Confidence 5444444333322 23466899999999861 1 1111111 111121111
Q ss_pred Eccccccc------------------------------------------------------------------------
Q 042003 124 VGRKNTAS------------------------------------------------------------------------ 131 (248)
Q Consensus 124 ~~~~~~~~------------------------------------------------------------------------ 131 (248)
........
T Consensus 232 ~~~~~~~~~~fs~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 311 (696)
T 2ykg_A 232 RKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFL 311 (696)
T ss_dssp EECCCCSCCHHHHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHH
T ss_pred EecCcccCChHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHH
Confidence 00000000
Q ss_pred ---------------------------------------ccceeEEE---------------EcCCchhHHHHHHHHHhc
Q 042003 132 ---------------------------------------ESIKQKLV---------------FAGSEEGKLLALRQSFAE 157 (248)
Q Consensus 132 ---------------------------------------~~~~~~~~---------------~~~~~~~~~~~l~~~~~~ 157 (248)
..+.+.+. .......|...+.+++..
T Consensus 312 ~~~~l~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~ 391 (696)
T 2ykg_A 312 YTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQE 391 (696)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Confidence 00000000 000133567777777765
Q ss_pred c----CCCCEEEEecchHHHHHHHHHhhcCC----CeeEEE--------ecCCCHHHHHHHHHHhhc-CCceEEEEeccc
Q 042003 158 S----LNPPVLIFVQSKERAKELYGELAFDG----IRAGVI--------HSDLSQTQRENAVDDFRA-GKTWVLIATDVI 220 (248)
Q Consensus 158 ~----~~~~~liF~~~~~~~~~l~~~L~~~~----~~v~~~--------~~~~~~~~r~~~~~~f~~-g~~~ilv~T~~~ 220 (248)
. .++++||||+++..++.+++.|+..+ +++..+ ||+|+.++|+++++.|++ |+.+|||||+++
T Consensus 392 ~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~ 471 (696)
T 2ykg_A 392 EYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVA 471 (696)
T ss_dssp HHTTCTTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEEESS
T ss_pred HhccCCCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechh
Confidence 4 46799999999999999999999887 788888 559999999999999998 999999999999
Q ss_pred ccCCCCCCCcEEEeccCCCCcccceecC
Q 042003 221 ARGMDFKGVNCVINYDFPDSGAAYIHRI 248 (248)
Q Consensus 221 ~~Gidip~~~~Vi~~~~p~~~~~~~qri 248 (248)
++|+|+|++++||+||+|+|+.+|+||+
T Consensus 472 ~~GiDip~v~~VI~~d~p~s~~~~~Qr~ 499 (696)
T 2ykg_A 472 DEGIDIAQCNLVILYEYVGNVIKMIQTR 499 (696)
T ss_dssp CCC---CCCSEEEEESCC--CCCC----
T ss_pred hcCCcCccCCEEEEeCCCCCHHHHHHhh
Confidence 9999999999999999999999999995
No 21
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=6.9e-34 Score=237.06 Aligned_cols=229 Identities=21% Similarity=0.290 Sum_probs=169.6
Q ss_pred CcchHHHHHHHhhcCCCcEEEEcccchhhh-------cccccCCCcEEEeChHHHHHHHhcCCcccCceeEEEEeccccc
Q 042003 1 LATQTTRECKKLAKGNKFQIKLMKKELVRS-------TDLSKFSCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKL 73 (248)
Q Consensus 1 L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~i~v~Tp~~l~~~~~~~~~~~~~~~~lIiDEah~~ 73 (248)
||.|+++.++++++ .+ ..+..+.|+... .....+.++|+|+||+++.+.+.. ..+.+++++|+||||++
T Consensus 76 L~~q~~~~~~~~~~-~~-~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~--~~~~~~~~iViDEaH~~ 151 (414)
T 3oiy_A 76 LVKQTLERLQKLAD-EK-VKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAV 151 (414)
T ss_dssp HHHHHHHHHHHHCC-SS-CCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH--HTTCCCSEEEESCHHHH
T ss_pred HHHHHHHHHHHHcc-CC-ceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH--hccccccEEEEeChHhh
Confidence 68899999999988 66 456666665532 122233499999999999888764 55679999999999987
Q ss_pred cccC----------ccccc-chhHhhhCC----------CccceeEEEEee-cCchHH-HHHHHhcCCcEEEEEcccccc
Q 042003 74 FEVG----------NLLKH-IDPVVKACS----------NPSIVRSLFSAT-LPDFVE-ELARSIMHDAVRVIVGRKNTA 130 (248)
Q Consensus 74 ~~~~----------~~~~~-~~~~~~~~~----------~~~~~~i~~SAT-~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 130 (248)
.+++ .|... +..++..+. ....|++++||| .|.... .+...+.. +........
T Consensus 152 ~~~~~~~d~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~----~~~~~~~~~ 227 (414)
T 3oiy_A 152 LKASRNIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLVSV 227 (414)
T ss_dssp HHCHHHHHHHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHS----CCSSCCCCC
T ss_pred hhccchhhhHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhc----cCcCccccc
Confidence 6532 15554 555555421 167899999999 454433 23333322 112223334
Q ss_pred cccceeEEEEcCCchhHHHHHHHHHhccCCCCEEEEecchHHHHHHHHHhhcCCCeeE-EEecCCCHHHHHHHHHHhhcC
Q 042003 131 SESIKQKLVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKERAKELYGELAFDGIRAG-VIHSDLSQTQRENAVDDFRAG 209 (248)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~liF~~~~~~~~~l~~~L~~~~~~v~-~~~~~~~~~~r~~~~~~f~~g 209 (248)
...+.+.+... ++...+.++++.. ++++||||++++.++.+++.|+..++++. .+||. +|+ ++.|++|
T Consensus 228 ~~~i~~~~~~~----~~~~~l~~~l~~~-~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f~~g 296 (414)
T 3oiy_A 228 ARNITHVRISS----RSKEKLVELLEIF-RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FEDFKVG 296 (414)
T ss_dssp CCSEEEEEESS----CCHHHHHHHHHHH-CSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHHHTT
T ss_pred cccchheeecc----CHHHHHHHHHHHc-CCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--HHHHhCC
Confidence 44555555433 2445556666664 58999999999999999999999999998 88984 444 9999999
Q ss_pred CceEEEE----ecccccCCCCCC-CcEEEeccCC--CCcccceecC
Q 042003 210 KTWVLIA----TDVIARGMDFKG-VNCVINYDFP--DSGAAYIHRI 248 (248)
Q Consensus 210 ~~~ilv~----T~~~~~Gidip~-~~~Vi~~~~p--~~~~~~~qri 248 (248)
+.+|||| |+++++|+|+|+ +++||+||+| .|+.+|+||+
T Consensus 297 ~~~vLvat~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~ 342 (414)
T 3oiy_A 297 KINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQAS 342 (414)
T ss_dssp SCSEEEEECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHH
T ss_pred CCeEEEEecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHh
Confidence 9999999 999999999999 9999999999 9999999984
No 22
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-32 Score=249.18 Aligned_cols=235 Identities=19% Similarity=0.187 Sum_probs=173.9
Q ss_pred CcchHHHHHHHhhcCCCcEEEEcccchhhhcccccCCCcEEEeChHHHHHHHhcCCcccCceeEEEEeccccccccCccc
Q 042003 1 LATQTTRECKKLAKGNKFQIKLMKKELVRSTDLSKFSCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEVGNLL 80 (248)
Q Consensus 1 L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Tp~~l~~~~~~~~~~~~~~~~lIiDEah~~~~~~~~~ 80 (248)
||.|+++.++++... +.++.|+.. ...+++|+|+||++|.+++.++...++++++||+||||++.+++ +.
T Consensus 239 La~Q~~~~l~~~~~~-----VglltGd~~----~~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~l~d~~-rg 308 (1108)
T 3l9o_A 239 LSNQKYRELLAEFGD-----VGLMTGDIT----INPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKE-RG 308 (1108)
T ss_dssp HHHHHHHHHHHHTSS-----EEEECSSCB----CCCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGGTTSHH-HH
T ss_pred HHHHHHHHHHHHhCC-----ccEEeCccc----cCCCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhhhccccc-hH
Confidence 688999999987763 334555433 33568999999999999999988888999999999999998887 77
Q ss_pred ccchhHhhhCCCccceeEEEEeecCchHH--HHHHHhcCCcEEEEEcccccccccceeEEEEcCC---------------
Q 042003 81 KHIDPVVKACSNPSIVRSLFSATLPDFVE--ELARSIMHDAVRVIVGRKNTASESIKQKLVFAGS--------------- 143 (248)
Q Consensus 81 ~~~~~~~~~~~~~~~~~i~~SAT~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 143 (248)
..+..++.. .+...|+++||||+++... .+.......+..+...... +..+.++++....
T Consensus 309 ~~~e~ii~~-l~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~r--p~pl~~~~~~~~~~~~~~~vd~~~~~~~ 385 (1108)
T 3l9o_A 309 VVWEETIIL-LPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFR--PTPLQHYLFPAHGDGIYLVVDEKSTFRE 385 (1108)
T ss_dssp HHHHHHHHH-SCTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCC--SSCEEEEEEETTSSCCEEEEETTTEECH
T ss_pred HHHHHHHHh-cCCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCC--cccceEEEeecCCcceeeeeccccchhh
Confidence 778888877 4678999999999987422 3444444555444332211 1112222211100
Q ss_pred ---------------------------------------chhHHHHHHHHHhccCCCCEEEEecchHHHHHHHHHhhcCC
Q 042003 144 ---------------------------------------EEGKLLALRQSFAESLNPPVLIFVQSKERAKELYGELAFDG 184 (248)
Q Consensus 144 ---------------------------------------~~~~~~~l~~~~~~~~~~~~liF~~~~~~~~~l~~~L~~~~ 184 (248)
...+...+...+.....+++||||++++.|+.++..|...+
T Consensus 386 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~ 465 (1108)
T 3l9o_A 386 ENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLD 465 (1108)
T ss_dssp HHHHHHHTTC-----------------------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHH
T ss_pred hhHHHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhcc
Confidence 02233344444545556799999999999999999986532
Q ss_pred C---------------------------------------eeEEEecCCCHHHHHHHHHHhhcCCceEEEEecccccCCC
Q 042003 185 I---------------------------------------RAGVIHSDLSQTQRENAVDDFRAGKTWVLIATDVIARGMD 225 (248)
Q Consensus 185 ~---------------------------------------~v~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gid 225 (248)
+ +++.+||+|++.+|+.+++.|++|..+|||||+++++|+|
T Consensus 466 ~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vla~GID 545 (1108)
T 3l9o_A 466 FNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLN 545 (1108)
T ss_dssp HHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCCCSCCC
T ss_pred CCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEECcHHhcCCC
Confidence 2 2899999999999999999999999999999999999999
Q ss_pred CCCCcEEEeccCCCCccc--------ceecC
Q 042003 226 FKGVNCVINYDFPDSGAA--------YIHRI 248 (248)
Q Consensus 226 ip~~~~Vi~~~~p~~~~~--------~~qri 248 (248)
+|++++||+++.|.+... |+||+
T Consensus 546 iP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~ 576 (1108)
T 3l9o_A 546 MPAKTVVFTSVRKWDGQQFRWVSGGEYIQMS 576 (1108)
T ss_dssp C--CEEEESCSEEESSSCEEECCHHHHHHHH
T ss_pred CCCceEEEecCcccCccccccCCHHHHHHhh
Confidence 999999999888765554 88984
No 23
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.98 E-value=1.5e-32 Score=243.21 Aligned_cols=236 Identities=18% Similarity=0.161 Sum_probs=176.1
Q ss_pred CcchHHHHHHHhhcCCCcEEEEcccchhhhcccccCCCcEEEeChHHHHHHHhcCCcccCceeEEEEeccccccccCccc
Q 042003 1 LATQTTRECKKLAKGNKFQIKLMKKELVRSTDLSKFSCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEVGNLL 80 (248)
Q Consensus 1 L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Tp~~l~~~~~~~~~~~~~~~~lIiDEah~~~~~~~~~ 80 (248)
||.|+++.++++.+. + ..+....|+.........+++|+|+||+++.+++.+....+++++++|+||+|.+.+++ +.
T Consensus 80 La~q~~~~~~~l~~~-g-~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~-r~ 156 (720)
T 2zj8_A 80 LAEEKFQEFQDWEKI-G-LRVAMATGDYDSKDEWLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLIGSRD-RG 156 (720)
T ss_dssp GHHHHHHHTGGGGGG-T-CCEEEECSCSSCCCGGGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTT-TH
T ss_pred HHHHHHHHHHHHHhc-C-CEEEEecCCCCccccccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCcccCCCc-cc
Confidence 678888888766543 4 45666666554433344579999999999999998877778999999999999998766 66
Q ss_pred ccchhHhhhCCCccceeEEEEeecCchHHHHHHHhcCCcEEEEEcccccccccceeEE------EEcCC----chhHHHH
Q 042003 81 KHIDPVVKACSNPSIVRSLFSATLPDFVEELARSIMHDAVRVIVGRKNTASESIKQKL------VFAGS----EEGKLLA 150 (248)
Q Consensus 81 ~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~----~~~~~~~ 150 (248)
..+..++..+.. +.|+++||||+++ ...+..++... .+..... +..+...+ .+... ...+...
T Consensus 157 ~~~~~ll~~l~~-~~~ii~lSATl~n-~~~~~~~l~~~--~~~~~~r---p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (720)
T 2zj8_A 157 ATLEVILAHMLG-KAQIIGLSATIGN-PEELAEWLNAE--LIVSDWR---PVKLRRGVFYQGFVTWEDGSIDRFSSWEEL 229 (720)
T ss_dssp HHHHHHHHHHBT-TBEEEEEECCCSC-HHHHHHHTTEE--EEECCCC---SSEEEEEEEETTEEEETTSCEEECSSTTHH
T ss_pred HHHHHHHHHhhc-CCeEEEEcCCcCC-HHHHHHHhCCc--ccCCCCC---CCcceEEEEeCCeeeccccchhhhhHHHHH
Confidence 777777766543 7899999999987 46666655321 1111111 11111111 11111 2334555
Q ss_pred HHHHHhccCCCCEEEEecchHHHHHHHHHhhcC---------------------------------CCeeEEEecCCCHH
Q 042003 151 LRQSFAESLNPPVLIFVQSKERAKELYGELAFD---------------------------------GIRAGVIHSDLSQT 197 (248)
Q Consensus 151 l~~~~~~~~~~~~liF~~~~~~~~~l~~~L~~~---------------------------------~~~v~~~~~~~~~~ 197 (248)
+.+.++. ++++||||+++++++.+++.|.+. ..++..+||+|+.+
T Consensus 230 ~~~~~~~--~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~ 307 (720)
T 2zj8_A 230 VYDAIRK--KKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRD 307 (720)
T ss_dssp HHHHHHT--TCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHH
T ss_pred HHHHHhC--CCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHH
Confidence 5555554 689999999999999999988653 12499999999999
Q ss_pred HHHHHHHHhhcCCceEEEEecccccCCCCCCCcEEEe----cc----CCCCcccceecC
Q 042003 198 QRENAVDDFRAGKTWVLIATDVIARGMDFKGVNCVIN----YD----FPDSGAAYIHRI 248 (248)
Q Consensus 198 ~r~~~~~~f~~g~~~ilv~T~~~~~Gidip~~~~Vi~----~~----~p~~~~~~~qri 248 (248)
+|..+++.|++|..+|||||+++++|+|+|++++||+ || .|.|..+|.||+
T Consensus 308 ~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~ 366 (720)
T 2zj8_A 308 ERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQML 366 (720)
T ss_dssp HHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHH
T ss_pred HHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHH
Confidence 9999999999999999999999999999999999999 66 589999999984
No 24
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.98 E-value=1.7e-32 Score=245.24 Aligned_cols=247 Identities=15% Similarity=0.132 Sum_probs=141.7
Q ss_pred CcchHHHHHHHhhcCCCcEEEEcccchh---hhcccccCCCcEEEeChHHHHHHHhcCCc-ccCceeEEEEecccccccc
Q 042003 1 LATQTTRECKKLAKGNKFQIKLMKKELV---RSTDLSKFSCDILISTPLRLRLAIRRKKI-DLSRVEYLVLDEADKLFEV 76 (248)
Q Consensus 1 L~~Q~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~v~Tp~~l~~~~~~~~~-~~~~~~~lIiDEah~~~~~ 76 (248)
|+.|+.+.++++.+..+ ..+..++|+. ........+++|+|+||+++.+.+..+.. .+.+++++|+||||++.+.
T Consensus 308 L~~Q~~~~~~~~~~~~~-~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~ 386 (797)
T 4a2q_A 308 VYEQQKNVFKHHFERQG-YSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGN 386 (797)
T ss_dssp HHHHHHHHHHHHHGGGT-CCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTT
T ss_pred HHHHHHHHHHHhcccCC-ceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCC
Confidence 57899999999988766 4556666665 22233456799999999999999988777 7899999999999999876
Q ss_pred CcccccchhHhhhC---CCccceeEEEEeecCc-----------hHHHHHHHh------------------cCCcEEEEE
Q 042003 77 GNLLKHIDPVVKAC---SNPSIVRSLFSATLPD-----------FVEELARSI------------------MHDAVRVIV 124 (248)
Q Consensus 77 ~~~~~~~~~~~~~~---~~~~~~~i~~SAT~~~-----------~~~~~~~~~------------------~~~~~~~~~ 124 (248)
+.+...+..+.... ..+..+++++|||++. ....+...+ ...+.....
T Consensus 387 ~~~~~i~~~~~~~~~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~ 466 (797)
T 4a2q_A 387 HPYNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVR 466 (797)
T ss_dssp SHHHHHHHHHHHHHHTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEE
T ss_pred ccHHHHHHHHHHHhhccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCceEEE
Confidence 64444433333321 1456889999999853 111111111 111111110
Q ss_pred ccccccccc--------------c-ee---------E-------------E-----------------------------
Q 042003 125 GRKNTASES--------------I-KQ---------K-------------L----------------------------- 138 (248)
Q Consensus 125 ~~~~~~~~~--------------~-~~---------~-------------~----------------------------- 138 (248)
......... . .. . .
T Consensus 467 ~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 546 (797)
T 4a2q_A 467 LVKRRIHNPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICT 546 (797)
T ss_dssp ECCCCSCCHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHH
T ss_pred ecCCCCCcHHHHHHHHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHH
Confidence 000000000 0 00 0 0
Q ss_pred -----------------------------------------------------------EEcCCchhHHHHHHHHHhc--
Q 042003 139 -----------------------------------------------------------VFAGSEEGKLLALRQSFAE-- 157 (248)
Q Consensus 139 -----------------------------------------------------------~~~~~~~~~~~~l~~~~~~-- 157 (248)
........|...+.+++..
T Consensus 547 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~ 626 (797)
T 4a2q_A 547 EHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAY 626 (797)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHh
Confidence 0000013355556666553
Q ss_pred --cCCCCEEEEecchHHHHHHHHHhhcC------------CCeeEEEecCCCHHHHHHHHHHhhc-CCceEEEEeccccc
Q 042003 158 --SLNPPVLIFVQSKERAKELYGELAFD------------GIRAGVIHSDLSQTQRENAVDDFRA-GKTWVLIATDVIAR 222 (248)
Q Consensus 158 --~~~~~~liF~~~~~~~~~l~~~L~~~------------~~~v~~~~~~~~~~~r~~~~~~f~~-g~~~ilv~T~~~~~ 222 (248)
..+.++||||++++.++.+++.|+.. |.+...+||+|+..+|.++++.|++ |+.+|||||+++++
T Consensus 627 ~~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~ 706 (797)
T 4a2q_A 627 RYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADE 706 (797)
T ss_dssp HHCSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC---
T ss_pred ccCCCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhc
Confidence 44689999999999999999999763 4566677899999999999999999 99999999999999
Q ss_pred CCCCCCCcEEEeccCCCCcccceecC
Q 042003 223 GMDFKGVNCVINYDFPDSGAAYIHRI 248 (248)
Q Consensus 223 Gidip~~~~Vi~~~~p~~~~~~~qri 248 (248)
|+|+|++++||+||+|+|+.+|+||+
T Consensus 707 GIDlp~v~~VI~yd~p~s~~~~iQr~ 732 (797)
T 4a2q_A 707 GIDIVQCNLVVLYEYSGNVTKMIQVR 732 (797)
T ss_dssp ----CCCSEEEEESCCSCHHHHHTC-
T ss_pred CCCchhCCEEEEeCCCCCHHHHHHhc
Confidence 99999999999999999999999996
No 25
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.98 E-value=2.5e-32 Score=231.36 Aligned_cols=245 Identities=20% Similarity=0.243 Sum_probs=172.6
Q ss_pred CcchHHHHHHHhhcCCCcEEEEcccchhhh--cccccCCCcEEEeChHHHHHHHhcCCcccCceeEEEEeccccccccCc
Q 042003 1 LATQTTRECKKLAKGNKFQIKLMKKELVRS--TDLSKFSCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEVGN 78 (248)
Q Consensus 1 L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~v~Tp~~l~~~~~~~~~~~~~~~~lIiDEah~~~~~~~ 78 (248)
|+.|+.+.++++....+ ..+..+.|+... ......+++|+|+||+.+.+.+..+.+.+.+++++|+||||++.+...
T Consensus 64 L~~q~~~~~~~~~~~~~-~~v~~~~g~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~ 142 (494)
T 1wp9_A 64 LVLQHAESFRRLFNLPP-EKIVALTGEKSPEERSKAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYA 142 (494)
T ss_dssp HHHHHHHHHHHHBCSCG-GGEEEECSCSCHHHHHHHHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCH
T ss_pred HHHHHHHHHHHHhCcch-hheEEeeCCcchhhhhhhccCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCCCc
Confidence 57899999998874433 235555555422 222334689999999999999988888889999999999999886543
Q ss_pred ccccchhHhhhCCCccceeEEEEeecCch---HHHHHHHhcCCcEEEEEcccccccc---cceeEEE-------------
Q 042003 79 LLKHIDPVVKACSNPSIVRSLFSATLPDF---VEELARSIMHDAVRVIVGRKNTASE---SIKQKLV------------- 139 (248)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~i~~SAT~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~------------- 139 (248)
+......+.. .....+++++|||+... ...+...+................. .......
T Consensus 143 ~~~~~~~~~~--~~~~~~~l~lTaTp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (494)
T 1wp9_A 143 YVFIAREYKR--QAKNPLVIGLTASPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRK 220 (494)
T ss_dssp HHHHHHHHHH--HCSSCCEEEEESCSCSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHH
T ss_pred HHHHHHHHHh--cCCCCeEEEEecCCCCCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHH
Confidence 3333333333 23567899999999743 3333333322211111000000000 0000000
Q ss_pred --------------------------------------------------------------------------------
Q 042003 140 -------------------------------------------------------------------------------- 139 (248)
Q Consensus 140 -------------------------------------------------------------------------------- 139 (248)
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (494)
T 1wp9_A 221 LLREMLRDALKPLAETGLLESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAY 300 (494)
T ss_dssp HHHHHHHHHHHHHHHHTSSSCCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccccccCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHH
Confidence
Q ss_pred ------------------------------------EcCCchhHHHHHHHHHhc----cCCCCEEEEecchHHHHHHHHH
Q 042003 140 ------------------------------------FAGSEEGKLLALRQSFAE----SLNPPVLIFVQSKERAKELYGE 179 (248)
Q Consensus 140 ------------------------------------~~~~~~~~~~~l~~~~~~----~~~~~~liF~~~~~~~~~l~~~ 179 (248)
.......|...+.+++.. ..+.++||||++++.++.+++.
T Consensus 301 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~ 380 (494)
T 1wp9_A 301 IKKLYEEAKAGSTKASKEIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNE 380 (494)
T ss_dssp HHHHHHHHHTTCCHHHHHHHTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHH
T ss_pred HHHHHHhhccccchhhhhhhhhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHH
Confidence 000233466667777765 4578999999999999999999
Q ss_pred hhcCCCeeEEEec--------CCCHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCcEEEeccCCCCcccceecC
Q 042003 180 LAFDGIRAGVIHS--------DLSQTQRENAVDDFRAGKTWVLIATDVIARGMDFKGVNCVINYDFPDSGAAYIHRI 248 (248)
Q Consensus 180 L~~~~~~v~~~~~--------~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~qri 248 (248)
|+..++++..+|| +|+.++|+++++.|++|+.+|||||+++++|+|+|++++||++|+|+|+..|.||+
T Consensus 381 L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~ 457 (494)
T 1wp9_A 381 LVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRR 457 (494)
T ss_dssp HHHTTCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHH
T ss_pred HHHcCCCcEEEeccccccccccCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHH
Confidence 9999999999999 99999999999999999999999999999999999999999999999999999984
No 26
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.98 E-value=8.3e-32 Score=238.49 Aligned_cols=235 Identities=20% Similarity=0.193 Sum_probs=170.4
Q ss_pred CcchHHHHHHHhhcCCCcEEEEcccchhhhcccccCCCcEEEeChHHHHHHHhcCCcccCceeEEEEeccccccccCccc
Q 042003 1 LATQTTRECKKLAKGNKFQIKLMKKELVRSTDLSKFSCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEVGNLL 80 (248)
Q Consensus 1 L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Tp~~l~~~~~~~~~~~~~~~~lIiDEah~~~~~~~~~ 80 (248)
||.|+++.++++.+ .+ ..+....|+.........+++|+|+||+++.+++.++...+++++++|+||+|.+.+++ +.
T Consensus 87 La~q~~~~~~~~~~-~g-~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~-~~ 163 (715)
T 2va8_A 87 LTNEKYLTFKDWEL-IG-FKVAMTSGDYDTDDAWLKNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHYLNDPE-RG 163 (715)
T ss_dssp HHHHHHHHHGGGGG-GT-CCEEECCSCSSSCCGGGGGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGGGGGCTT-TH
T ss_pred HHHHHHHHHHHhhc-CC-CEEEEEeCCCCCchhhcCCCCEEEEcHHHHHHHHhCChhHhhccCEEEEechhhcCCcc-cc
Confidence 57788888865544 35 44555666553333233479999999999999998877778999999999999987665 66
Q ss_pred ccchhHhhhCCCccceeEEEEeecCchHHHHHHHhcCCcEEEEEccccccccccee------------EEEEcC------
Q 042003 81 KHIDPVVKACSNPSIVRSLFSATLPDFVEELARSIMHDAVRVIVGRKNTASESIKQ------------KLVFAG------ 142 (248)
Q Consensus 81 ~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~------ 142 (248)
..+..++.... +.|+++||||+++ ...+..++.. +. +...... ..+.. ...+..
T Consensus 164 ~~l~~i~~~~~--~~~ii~lSATl~n-~~~~~~~l~~-~~-~~~~~r~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (715)
T 2va8_A 164 PVVESVTIRAK--RRNLLALSATISN-YKQIAKWLGA-EP-VATNWRP---VPLIEGVIYPERKKKEYNVIFKDNTTKKV 235 (715)
T ss_dssp HHHHHHHHHHH--TSEEEEEESCCTT-HHHHHHHHTC-EE-EECCCCS---SCEEEEEEEECSSTTEEEEEETTSCEEEE
T ss_pred hHHHHHHHhcc--cCcEEEEcCCCCC-HHHHHHHhCC-Cc-cCCCCCC---CCceEEEEecCCcccceeeecCcchhhhc
Confidence 66777665543 7899999999986 4666665532 11 1111111 01111 111111
Q ss_pred -CchhHHHHHHHHHhccCCCCEEEEecchHHHHHHHHHhhcCC------------------------------------C
Q 042003 143 -SEEGKLLALRQSFAESLNPPVLIFVQSKERAKELYGELAFDG------------------------------------I 185 (248)
Q Consensus 143 -~~~~~~~~l~~~~~~~~~~~~liF~~~~~~~~~l~~~L~~~~------------------------------------~ 185 (248)
..+.+...+.+.+.. ++++||||+++++++.+++.|.+.. .
T Consensus 236 ~~~~~~~~~~~~~~~~--~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~ 313 (715)
T 2va8_A 236 HGDDAIIAYTLDSLSK--NGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISK 313 (715)
T ss_dssp ESSSHHHHHHHHHHTT--TCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTT
T ss_pred ccchHHHHHHHHHHhc--CCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhc
Confidence 124455666666553 6899999999999999999987542 2
Q ss_pred eeEEEecCCCHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCcEEEe----cc-------CCCCcccceecC
Q 042003 186 RAGVIHSDLSQTQRENAVDDFRAGKTWVLIATDVIARGMDFKGVNCVIN----YD-------FPDSGAAYIHRI 248 (248)
Q Consensus 186 ~v~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gidip~~~~Vi~----~~-------~p~~~~~~~qri 248 (248)
.+.++||+|+.++|..+++.|++|..+|||||+++++|+|+|++++||+ || .|.|..+|.||+
T Consensus 314 ~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~ 387 (715)
T 2va8_A 314 GVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMS 387 (715)
T ss_dssp TEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHH
T ss_pred CEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHh
Confidence 5899999999999999999999999999999999999999999999999 99 899999999984
No 27
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.98 E-value=3.1e-31 Score=240.09 Aligned_cols=234 Identities=20% Similarity=0.203 Sum_probs=176.2
Q ss_pred CcchHHHHHHHhhcCCCcEEEEcccchhhhcccccCCCcEEEeChHHHHHHHhcCCcccCceeEEEEeccccccccCccc
Q 042003 1 LATQTTRECKKLAKGNKFQIKLMKKELVRSTDLSKFSCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEVGNLL 80 (248)
Q Consensus 1 L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Tp~~l~~~~~~~~~~~~~~~~lIiDEah~~~~~~~~~ 80 (248)
|+.|+++.++++... +..+.|+... ..+++|+|+||++|.+++.++...+++++++|+||||++.+++ +.
T Consensus 141 La~Q~~~~l~~~~~~-----vglltGd~~~----~~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~~-rg 210 (1010)
T 2xgj_A 141 LSNQKYRELLAEFGD-----VGLMTGDITI----NPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKE-RG 210 (1010)
T ss_dssp HHHHHHHHHHHHHSC-----EEEECSSCEE----CTTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTT-TH
T ss_pred HHHHHHHHHHHHhCC-----EEEEeCCCcc----CCCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcccc-hh
Confidence 678999999987762 4445554432 2368999999999999998888889999999999999998876 66
Q ss_pred ccchhHhhhCCCccceeEEEEeecCchHHHHHHHh---cCCcEEEEEcccccccccceeEEEEcC---------Cc----
Q 042003 81 KHIDPVVKACSNPSIVRSLFSATLPDFVEELARSI---MHDAVRVIVGRKNTASESIKQKLVFAG---------SE---- 144 (248)
Q Consensus 81 ~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~---- 144 (248)
..+..++.. .+...+++++|||+++. .++..++ .+.+..+...... +..+.++++... ..
T Consensus 211 ~~~e~il~~-l~~~~~il~LSATi~n~-~e~a~~l~~~~~~~~~vi~~~~r--p~pl~~~~~~~~~~~~~~~~~~~~~~~ 286 (1010)
T 2xgj_A 211 VVWEETIIL-LPDKVRYVFLSATIPNA-MEFAEWICKIHSQPCHIVYTNFR--PTPLQHYLFPAHGDGIYLVVDEKSTFR 286 (1010)
T ss_dssp HHHHHHHHH-SCTTCEEEEEECCCTTH-HHHHHHHHHHHTSCEEEEEECCC--SSCEEEEEEETTSSCCEEEECTTCCBC
T ss_pred HHHHHHHHh-cCCCCeEEEEcCCCCCH-HHHHHHHHhhcCCCeEEEecCCC--cccceEEEEecCCcceeeeeccccccc
Confidence 667777776 45678999999999873 3344433 3444444332211 122333322211 00
Q ss_pred -----------------------------------------hhHHHHHHHHHhccCCCCEEEEecchHHHHHHHHHhhcC
Q 042003 145 -----------------------------------------EGKLLALRQSFAESLNPPVLIFVQSKERAKELYGELAFD 183 (248)
Q Consensus 145 -----------------------------------------~~~~~~l~~~~~~~~~~~~liF~~~~~~~~~l~~~L~~~ 183 (248)
......+...+......++||||++++.|+.+++.|...
T Consensus 287 ~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~ 366 (1010)
T 2xgj_A 287 EENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKL 366 (1010)
T ss_dssp HHHHHHHHHTCC------------------------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTS
T ss_pred hHHHHHHHHHHhhhhcccccccccccccccccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhC
Confidence 122333444455544569999999999999999999764
Q ss_pred CC---------------------------------------eeEEEecCCCHHHHHHHHHHhhcCCceEEEEecccccCC
Q 042003 184 GI---------------------------------------RAGVIHSDLSQTQRENAVDDFRAGKTWVLIATDVIARGM 224 (248)
Q Consensus 184 ~~---------------------------------------~v~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gi 224 (248)
++ +++.+||+|++.+|+.+++.|++|.++|||||+++++|+
T Consensus 367 ~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GI 446 (1010)
T 2xgj_A 367 DFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGL 446 (1010)
T ss_dssp CCCCHHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGST
T ss_pred CCCChHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccC
Confidence 33 289999999999999999999999999999999999999
Q ss_pred CCCCCcEEEe----ccC----CCCcccceecC
Q 042003 225 DFKGVNCVIN----YDF----PDSGAAYIHRI 248 (248)
Q Consensus 225 dip~~~~Vi~----~~~----p~~~~~~~qri 248 (248)
|+|++++||+ ||. |.|+.+|.||+
T Consensus 447 DiP~~~vVI~~~~kfd~~~~rp~s~~~y~Qr~ 478 (1010)
T 2xgj_A 447 NMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMS 478 (1010)
T ss_dssp TCCBSEEEESCSEEECSSCEEECCHHHHHHHH
T ss_pred CCCCceEEEeCCcccCCcCCccCCHHHHhHhh
Confidence 9999999999 999 89999999984
No 28
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.97 E-value=3e-32 Score=240.70 Aligned_cols=237 Identities=22% Similarity=0.203 Sum_probs=173.2
Q ss_pred CcchHHHHHHHhhcCCCcEEEEcccchhhhcccccCCCcEEEeChHHHHHHHhcCCcccCceeEEEEeccccccccCccc
Q 042003 1 LATQTTRECKKLAKGNKFQIKLMKKELVRSTDLSKFSCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEVGNLL 80 (248)
Q Consensus 1 L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Tp~~l~~~~~~~~~~~~~~~~lIiDEah~~~~~~~~~ 80 (248)
||.|+++.++++.+ .+ ..+....|+.........+++|+|+||+++.+++.++...+++++++|+||+|.+.+++ +.
T Consensus 80 La~q~~~~~~~~~~-~g-~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~l~~~~-r~ 156 (702)
T 2p6r_A 80 LAGEKYESFKKWEK-IG-LRIGISTGDYESRDEHLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEK-RG 156 (702)
T ss_dssp HHHHHHHHHTTTTT-TT-CCEEEECSSCBCCSSCSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGCTT-TH
T ss_pred HHHHHHHHHHHHHh-cC-CEEEEEeCCCCcchhhccCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeeecCCCC-cc
Confidence 57788888865544 35 44555666553333334589999999999999998877778999999999999998766 55
Q ss_pred ccchhHhhhC--CCccceeEEEEeecCchHHHHHHHhcCCcEEEEEcccccccccceeEE------EEcCCc------hh
Q 042003 81 KHIDPVVKAC--SNPSIVRSLFSATLPDFVEELARSIMHDAVRVIVGRKNTASESIKQKL------VFAGSE------EG 146 (248)
Q Consensus 81 ~~~~~~~~~~--~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~------~~ 146 (248)
..+..++..+ ..+..|+++||||+++ ...+..++. .+ .+...... ..+...+ .+.... ..
T Consensus 157 ~~~~~ll~~l~~~~~~~~ii~lSATl~n-~~~~~~~l~-~~-~~~~~~r~---~~l~~~~~~~~~~~~~~~~~~~~~~~~ 230 (702)
T 2p6r_A 157 ATLEILVTKMRRMNKALRVIGLSATAPN-VTEIAEWLD-AD-YYVSDWRP---VPLVEGVLCEGTLELFDGAFSTSRRVK 230 (702)
T ss_dssp HHHHHHHHHHHHHCTTCEEEEEECCCTT-HHHHHHHTT-CE-EEECCCCS---SCEEEEEECSSEEEEEETTEEEEEECC
T ss_pred cHHHHHHHHHHhcCcCceEEEECCCcCC-HHHHHHHhC-CC-cccCCCCC---ccceEEEeeCCeeeccCcchhhhhhhh
Confidence 5555554443 2457899999999986 566666553 22 12111111 1111111 111110 01
Q ss_pred HHHHHHHHHhccCCCCEEEEecchHHHHHHHHHhhcC------------------------------CCeeEEEecCCCH
Q 042003 147 KLLALRQSFAESLNPPVLIFVQSKERAKELYGELAFD------------------------------GIRAGVIHSDLSQ 196 (248)
Q Consensus 147 ~~~~l~~~~~~~~~~~~liF~~~~~~~~~l~~~L~~~------------------------------~~~v~~~~~~~~~ 196 (248)
+...+.+.++. ++++||||+++++++.+++.|.+. +.++..+||+|+.
T Consensus 231 ~~~~~~~~~~~--~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~ 308 (702)
T 2p6r_A 231 FEELVEECVAE--NGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLN 308 (702)
T ss_dssp HHHHHHHHHHT--TCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCH
T ss_pred HHHHHHHHHhc--CCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCH
Confidence 55566665553 689999999999999999988642 1368899999999
Q ss_pred HHHHHHHHHhhcCCceEEEEecccccCCCCCCCcEEEe----cc---CCCCcccceecC
Q 042003 197 TQRENAVDDFRAGKTWVLIATDVIARGMDFKGVNCVIN----YD---FPDSGAAYIHRI 248 (248)
Q Consensus 197 ~~r~~~~~~f~~g~~~ilv~T~~~~~Gidip~~~~Vi~----~~---~p~~~~~~~qri 248 (248)
++|..+++.|++|+.+|||||+++++|+|+|++++||+ || .|.|..+|.||+
T Consensus 309 ~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~ 367 (702)
T 2p6r_A 309 GQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMA 367 (702)
T ss_dssp HHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHh
Confidence 99999999999999999999999999999999999999 66 789999999984
No 29
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.97 E-value=7.8e-32 Score=243.64 Aligned_cols=247 Identities=15% Similarity=0.132 Sum_probs=143.2
Q ss_pred CcchHHHHHHHhhcCCCcEEEEcccchh---hhcccccCCCcEEEeChHHHHHHHhcCCc-ccCceeEEEEecccccccc
Q 042003 1 LATQTTRECKKLAKGNKFQIKLMKKELV---RSTDLSKFSCDILISTPLRLRLAIRRKKI-DLSRVEYLVLDEADKLFEV 76 (248)
Q Consensus 1 L~~Q~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~v~Tp~~l~~~~~~~~~-~~~~~~~lIiDEah~~~~~ 76 (248)
|+.|+++.++++.+..+ ..+..++|+. .+......+++|+|+||+++.+.+..+.. .+.+++++|+||||++.+.
T Consensus 308 L~~Q~~~~~~~~~~~~~-~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~ 386 (936)
T 4a2w_A 308 VYEQQKNVFKHHFERQG-YSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGN 386 (936)
T ss_dssp HHHHHHHHHHHHHHTTT-CCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTT
T ss_pred HHHHHHHHHHHHhcccC-ceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCC
Confidence 57899999999988777 4556666655 22233445799999999999999988776 7899999999999999877
Q ss_pred CcccccchhHhhhC---CCccceeEEEEeecCc-----------hHHHHHH------------------HhcCCcEEEEE
Q 042003 77 GNLLKHIDPVVKAC---SNPSIVRSLFSATLPD-----------FVEELAR------------------SIMHDAVRVIV 124 (248)
Q Consensus 77 ~~~~~~~~~~~~~~---~~~~~~~i~~SAT~~~-----------~~~~~~~------------------~~~~~~~~~~~ 124 (248)
+.+...+..+.... .....+++++|||++. ....+.. .+...+.....
T Consensus 387 ~~~~~i~~~~~~~~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~ 466 (936)
T 4a2w_A 387 HPYNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVR 466 (936)
T ss_dssp CHHHHHHHHHHHHHHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEE
T ss_pred ccHHHHHHHHHHHhhccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHHHhccCCcceEE
Confidence 64444443443321 1456889999999852 1111111 11122211111
Q ss_pred ccccccccc--------------c-ee---------E-------------E-----------------------------
Q 042003 125 GRKNTASES--------------I-KQ---------K-------------L----------------------------- 138 (248)
Q Consensus 125 ~~~~~~~~~--------------~-~~---------~-------------~----------------------------- 138 (248)
......... . .. . .
T Consensus 467 ~~~~~~~~~~~~~l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~ 546 (936)
T 4a2w_A 467 LVKRRIHNPFAAIISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICT 546 (936)
T ss_dssp ECCCCSCCHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHH
T ss_pred ecccccCcHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHH
Confidence 100000000 0 00 0 0
Q ss_pred -----------------------------------------------------------EEcCCchhHHHHHHHHHhc--
Q 042003 139 -----------------------------------------------------------VFAGSEEGKLLALRQSFAE-- 157 (248)
Q Consensus 139 -----------------------------------------------------------~~~~~~~~~~~~l~~~~~~-- 157 (248)
........|...+.+++..
T Consensus 547 ~~l~~~~~al~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~ 626 (936)
T 4a2w_A 547 EHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAY 626 (936)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHh
Confidence 0000013355555666654
Q ss_pred --cCCCCEEEEecchHHHHHHHHHhhcC------------CCeeEEEecCCCHHHHHHHHHHhhc-CCceEEEEeccccc
Q 042003 158 --SLNPPVLIFVQSKERAKELYGELAFD------------GIRAGVIHSDLSQTQRENAVDDFRA-GKTWVLIATDVIAR 222 (248)
Q Consensus 158 --~~~~~~liF~~~~~~~~~l~~~L~~~------------~~~v~~~~~~~~~~~r~~~~~~f~~-g~~~ilv~T~~~~~ 222 (248)
..+.++||||++++.++.+++.|+.. |.+...+||+|+..+|.++++.|++ |+.+|||||+++++
T Consensus 627 ~~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~e 706 (936)
T 4a2w_A 627 RYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADE 706 (936)
T ss_dssp TSCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC---
T ss_pred ccCCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhc
Confidence 34689999999999999999999876 5556677899999999999999999 99999999999999
Q ss_pred CCCCCCCcEEEeccCCCCcccceecC
Q 042003 223 GMDFKGVNCVINYDFPDSGAAYIHRI 248 (248)
Q Consensus 223 Gidip~~~~Vi~~~~p~~~~~~~qri 248 (248)
|+|+|++++||+||+|+|+.+|+||+
T Consensus 707 GIDlp~v~~VI~yD~p~s~~~~iQr~ 732 (936)
T 4a2w_A 707 GIDIVQCNLVVLYEYSGNVTKMIQVR 732 (936)
T ss_dssp ---CCCCSEEEEESCCSCSHHHHCC-
T ss_pred CCcchhCCEEEEeCCCCCHHHHHHhc
Confidence 99999999999999999999999996
No 30
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.97 E-value=4e-32 Score=240.22 Aligned_cols=89 Identities=27% Similarity=0.452 Sum_probs=80.7
Q ss_pred CCCEEEEecchHHHHHHHHHhhcC------CCeeEEEecC--------CCHHHHHHHHHHhhcCCceEEEEecccccCCC
Q 042003 160 NPPVLIFVQSKERAKELYGELAFD------GIRAGVIHSD--------LSQTQRENAVDDFRAGKTWVLIATDVIARGMD 225 (248)
Q Consensus 160 ~~~~liF~~~~~~~~~l~~~L~~~------~~~v~~~~~~--------~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gid 225 (248)
++++||||++++.++.+++.|+.. |+++..+||+ |+.++|.++++.|++|+.+|||||+++++|+|
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GID 479 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLD 479 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSC
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCc
Confidence 689999999999999999999987 8999999999 99999999999999999999999999999999
Q ss_pred CCCCcEEEeccCCCCcccceecC
Q 042003 226 FKGVNCVINYDFPDSGAAYIHRI 248 (248)
Q Consensus 226 ip~~~~Vi~~~~p~~~~~~~qri 248 (248)
+|++++||+||+|+|+.+|+||+
T Consensus 480 ip~v~~VI~~d~p~s~~~~~Qr~ 502 (699)
T 4gl2_A 480 IKECNIVIRYGLVTNEIAMVQAR 502 (699)
T ss_dssp CCSCCCCEEESCCCCHHHHHHHH
T ss_pred cccCCEEEEeCCCCCHHHHHHHc
Confidence 99999999999999999999984
No 31
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.97 E-value=4.5e-30 Score=232.42 Aligned_cols=235 Identities=21% Similarity=0.183 Sum_probs=175.0
Q ss_pred CcchHHHHHHHhhcCCCcEEEEcccchhhhcccccCCCcEEEeChHHHHHHHhcCCcccCceeEEEEeccccccccCccc
Q 042003 1 LATQTTRECKKLAKGNKFQIKLMKKELVRSTDLSKFSCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEVGNLL 80 (248)
Q Consensus 1 L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Tp~~l~~~~~~~~~~~~~~~~lIiDEah~~~~~~~~~ 80 (248)
|+.|+++.++++..+ ..+..+.|+.. ....++|+|+||++|.+++......+++++++|+||||++.+++ +.
T Consensus 94 La~Q~~~~l~~~~~~---~~v~~l~G~~~----~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d~~-~g 165 (997)
T 4a4z_A 94 LSNQKFRDFKETFDD---VNIGLITGDVQ----INPDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQD-RG 165 (997)
T ss_dssp GHHHHHHHHHTTC-----CCEEEECSSCE----ECTTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCTTC-TT
T ss_pred HHHHHHHHHHHHcCC---CeEEEEeCCCc----cCCCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcccccccc-hH
Confidence 678888888886553 33555666542 23458999999999999998888888999999999999999988 78
Q ss_pred ccchhHhhhCCCccceeEEEEeecCchHHHHHHHhcC---CcEEEEEcccccccccceeEE-------------------
Q 042003 81 KHIDPVVKACSNPSIVRSLFSATLPDFVEELARSIMH---DAVRVIVGRKNTASESIKQKL------------------- 138 (248)
Q Consensus 81 ~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~------------------- 138 (248)
..+..+... .+...+++++|||+++. .++..|+.. .+..+...... +.++.+++
T Consensus 166 ~~~e~ii~~-l~~~v~iIlLSAT~~n~-~ef~~~l~~~~~~~~~vi~~~~r--~~pl~~~v~~~~~~~~~~~~~~~~~~~ 241 (997)
T 4a4z_A 166 VVWEEVIIM-LPQHVKFILLSATVPNT-YEFANWIGRTKQKNIYVISTPKR--PVPLEINIWAKKELIPVINQNSEFLEA 241 (997)
T ss_dssp CCHHHHHHH-SCTTCEEEEEECCCTTH-HHHHHHHHHHHTCCEEEEECSSC--SSCEEEEEEETTEEEEEECTTCCBCHH
T ss_pred HHHHHHHHh-cccCCCEEEEcCCCCCh-HHHHHHHhcccCCceEEEecCCC--CccceEEEecCCcchhcccchhhhhHH
Confidence 888888877 56789999999999863 355555431 22222111100 01111111
Q ss_pred -------------------------------------------------------------------------EEcCCch
Q 042003 139 -------------------------------------------------------------------------VFAGSEE 145 (248)
Q Consensus 139 -------------------------------------------------------------------------~~~~~~~ 145 (248)
.......
T Consensus 242 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (997)
T 4a4z_A 242 NFRKHKEILNGESAKGAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSK 321 (997)
T ss_dssp HHHHHHHHHC-----------------------------------------------------------------CCCCT
T ss_pred HHHHHHHHhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccch
Confidence 0011123
Q ss_pred hHHHHHHHHHhccCCCCEEEEecchHHHHHHHHHhhcCCC---------------------------------------e
Q 042003 146 GKLLALRQSFAESLNPPVLIFVQSKERAKELYGELAFDGI---------------------------------------R 186 (248)
Q Consensus 146 ~~~~~l~~~~~~~~~~~~liF~~~~~~~~~l~~~L~~~~~---------------------------------------~ 186 (248)
.+...+...+......++||||++++.|+.+++.|...++ +
T Consensus 322 ~~~~~li~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~g 401 (997)
T 4a4z_A 322 KTWPEIVNYLRKRELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERG 401 (997)
T ss_dssp THHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTT
T ss_pred hHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcC
Confidence 4466677777777678999999999999999999977554 5
Q ss_pred eEEEecCCCHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCcEEEeccCCC---------CcccceecC
Q 042003 187 AGVIHSDLSQTQRENAVDDFRAGKTWVLIATDVIARGMDFKGVNCVINYDFPD---------SGAAYIHRI 248 (248)
Q Consensus 187 v~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gidip~~~~Vi~~~~p~---------~~~~~~qri 248 (248)
+..+||+|++.+|+.+++.|++|..+|||||+++++|+|+|+ ..||+++.|. |+..|+||+
T Consensus 402 i~~~H~gl~~~~R~~v~~~F~~G~~kVLvAT~~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~ 471 (997)
T 4a4z_A 402 IAVHHGGLLPIVKELIEILFSKGFIKVLFATETFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMA 471 (997)
T ss_dssp EEEECTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHH
T ss_pred eeeecCCCCHHHHHHHHHHHHCCCCcEEEEchHhhCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHh
Confidence 899999999999999999999999999999999999999999 6666666655 899999984
No 32
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.97 E-value=1.5e-31 Score=243.97 Aligned_cols=219 Identities=23% Similarity=0.298 Sum_probs=163.6
Q ss_pred CcchHHHHHHHhhcCCCcEEEEcccchhhh------cccc-cCCCcEEEeChHHHHHHHhcCCcccCceeEEEEeccccc
Q 042003 1 LATQTTRECKKLAKGNKFQIKLMKKELVRS------TDLS-KFSCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKL 73 (248)
Q Consensus 1 L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~-~~~~~i~v~Tp~~l~~~~~~~~~~~~~~~~lIiDEah~~ 73 (248)
||.|+++.+++++ ..+ ..+..+.|+... ...+ .+.++|+|+||+++.+++.. +.+++++++|+||||++
T Consensus 133 La~Q~~~~l~~l~-~~~-i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~--l~~~~l~~lViDEaH~l 208 (1104)
T 4ddu_A 133 LVKQTLERLQKLA-DEK-VKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAV 208 (1104)
T ss_dssp HHHHHHHHHHTTS-CTT-SCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH--HHTSCCSEEEESCHHHH
T ss_pred HHHHHHHHHHHhh-CCC-CeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh--hcccCcCEEEEeCCCcc
Confidence 6889999999987 666 456666665532 1223 33599999999999888774 66789999999999987
Q ss_pred cc-----------cCccccc-chhHhhhCC----------CccceeEEEEee-cCchHH-HHHHHhcCCcEEEEEccccc
Q 042003 74 FE-----------VGNLLKH-IDPVVKACS----------NPSIVRSLFSAT-LPDFVE-ELARSIMHDAVRVIVGRKNT 129 (248)
Q Consensus 74 ~~-----------~~~~~~~-~~~~~~~~~----------~~~~~~i~~SAT-~~~~~~-~~~~~~~~~~~~~~~~~~~~ 129 (248)
.. +| |... +..+++.+. ....|++++||| .|.... .+...... +.......
T Consensus 209 ~~~~r~~Dr~L~~~g-f~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~----i~v~~~~~ 283 (1104)
T 4ddu_A 209 LKASRNIDTLLMMVG-IPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLVS 283 (1104)
T ss_dssp TTSSHHHHHHHHTSS-CCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC----CCCCBCCC
T ss_pred ccccccchhhhHhcC-CCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhccee----EEeccCCC
Confidence 65 45 5555 666665422 157899999999 454433 22333322 22333344
Q ss_pred ccccceeEEEEcCCchhHHHHHHHHHhccCCCCEEEEecchHHHHHHHHHhhcCCCeeE-EEecCCCHHHHHHHHHHhhc
Q 042003 130 ASESIKQKLVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKERAKELYGELAFDGIRAG-VIHSDLSQTQRENAVDDFRA 208 (248)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~liF~~~~~~~~~l~~~L~~~~~~v~-~~~~~~~~~~r~~~~~~f~~ 208 (248)
...++.+.+..+ ++...+.+++... ++++||||++++.++.+++.|+..++++. .+||. |++ ++.|++
T Consensus 284 ~~~~i~~~~~~~----~k~~~L~~ll~~~-~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg~-----rr~-l~~F~~ 352 (1104)
T 4ddu_A 284 VARNITHVRISS----RSKEKLVELLEIF-RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF-----EKN-FEDFKV 352 (1104)
T ss_dssp CCCCEEEEEESC----CCHHHHHHHHHHH-CSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSSH-----HHH-HHHHHH
T ss_pred CcCCceeEEEec----CHHHHHHHHHHhc-CCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecCc-----HHH-HHHHHC
Confidence 455566666544 2445556666664 58999999999999999999999999998 99992 555 999999
Q ss_pred CCceEEEE----ecccccCCCCCC-CcEEEeccCCC
Q 042003 209 GKTWVLIA----TDVIARGMDFKG-VNCVINYDFPD 239 (248)
Q Consensus 209 g~~~ilv~----T~~~~~Gidip~-~~~Vi~~~~p~ 239 (248)
|+.+|||| |+++++|+|+|+ +++||+||+|.
T Consensus 353 G~~~VLVatas~TdvlarGIDip~~V~~VI~~d~P~ 388 (1104)
T 4ddu_A 353 GKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPS 388 (1104)
T ss_dssp TSCSEEEEETTTHHHHCCSCCCTTTCCEEEEESCCE
T ss_pred CCCCEEEEecCCCCeeEecCcCCCCCCEEEEECCCC
Confidence 99999999 999999999999 99999999998
No 33
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.96 E-value=2.7e-31 Score=242.13 Aligned_cols=218 Identities=16% Similarity=0.262 Sum_probs=159.2
Q ss_pred CcchHHHHHHHhhcCCCcE---EEEcccchhhh------cccccCCCcEEEeChHHHHHHHhcCCcccCceeEEEEeccc
Q 042003 1 LATQTTRECKKLAKGNKFQ---IKLMKKELVRS------TDLSKFSCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEAD 71 (248)
Q Consensus 1 L~~Q~~~~~~~~~~~~~~~---~~~~~~~~~~~------~~~~~~~~~i~v~Tp~~l~~~~~~~~~~~~~~~~lIiDEah 71 (248)
||.|+++.++++++..++. .+..++|+... ...+.+ ++|+|+||++|.+.+.+ +++++++|+||||
T Consensus 111 La~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~----L~~l~~lViDEah 185 (1054)
T 1gku_B 111 LVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE----LGHFDFIFVDDVD 185 (1054)
T ss_dssp HHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT----SCCCSEEEESCHH
T ss_pred HHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH----hccCCEEEEeChh
Confidence 6899999999999888741 56666665522 233444 99999999999987765 6799999999999
Q ss_pred cccccCcccccchhHhhhC----------CCccceeEEEEeecCchHHHHHHHhcCCcEEEEEcccccccccceeEEEEc
Q 042003 72 KLFEVGNLLKHIDPVVKAC----------SNPSIVRSLFSATLPDFVEELARSIMHDAVRVIVGRKNTASESIKQKLVFA 141 (248)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~----------~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (248)
++.+++ ..+..+...+ .+...|++++|||+++. ..+...++.++..+..........++.+.+.
T Consensus 186 ~~l~~~---~~~~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~v~~~~~~~~~i~~~~~-- 259 (1054)
T 1gku_B 186 AILKAS---KNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFDIGSSRITVRNVEDVAV-- 259 (1054)
T ss_dssp HHHTST---HHHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCCCSCCEECCCCEEEEEE--
T ss_pred hhhhcc---ccHHHHHHHhCcchhhhhhhcccCCceEEEEecCCCc-hhHHHHHhhcceEEEccCcccCcCCceEEEe--
Confidence 988843 3333333332 13567899999999886 4333333333333333333334445555554
Q ss_pred CCchhHHHHHHHHHhccCCCCEEEEecchHHHHHHHHHhhcCCCeeEEEecCCCHHHHHHHHHHhhcCCceEEEE----e
Q 042003 142 GSEEGKLLALRQSFAESLNPPVLIFVQSKERAKELYGELAFDGIRAGVIHSDLSQTQRENAVDDFRAGKTWVLIA----T 217 (248)
Q Consensus 142 ~~~~~~~~~l~~~~~~~~~~~~liF~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~ilv~----T 217 (248)
...+...+..+++.. ++++||||++++.++.+++.|+.. +++..+||++ .++++.|++|+.+|||| |
T Consensus 260 --~~~k~~~L~~ll~~~-~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~-----~~~l~~F~~G~~~VLVaTas~T 330 (1054)
T 1gku_B 260 --NDESISTLSSILEKL-GTGGIIYARTGEEAEEIYESLKNK-FRIGIVTATK-----KGDYEKFVEGEIDHLIGTAHYY 330 (1054)
T ss_dssp --SCCCTTTTHHHHTTS-CSCEEEEESSHHHHHHHHHTTTTS-SCEEECTTSS-----SHHHHHHHHTSCSEEEEECC--
T ss_pred --chhHHHHHHHHHhhc-CCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEeccH-----HHHHHHHHcCCCcEEEEecCCC
Confidence 234556677777766 689999999999999999999988 9999999998 37889999999999999 8
Q ss_pred cccccCCCCCCC-cEEEeccCC
Q 042003 218 DVIARGMDFKGV-NCVINYDFP 238 (248)
Q Consensus 218 ~~~~~Gidip~~-~~Vi~~~~p 238 (248)
+++++|+|+|++ ++||++|+|
T Consensus 331 dv~~rGIDip~VI~~VI~~~~P 352 (1054)
T 1gku_B 331 GTLVRGLDLPERIRFAVFVGCP 352 (1054)
T ss_dssp ----CCSCCTTTCCEEEEESCC
T ss_pred CeeEeccccCCcccEEEEeCCC
Confidence 999999999995 999999999
No 34
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.96 E-value=3.4e-30 Score=220.18 Aligned_cols=237 Identities=13% Similarity=0.080 Sum_probs=162.7
Q ss_pred CcchHHHHHHHhhcCCCcEEEEcccchhhhcccccCCCcEEEeChHHHHHHHhcCCcccCceeEEEEeccccccccCccc
Q 042003 1 LATQTTRECKKLAKGNKFQIKLMKKELVRSTDLSKFSCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEVGNLL 80 (248)
Q Consensus 1 L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Tp~~l~~~~~~~~~~~~~~~~lIiDEah~~~~~~~~~ 80 (248)
|+.|+++.+++++...+ ..+..+.|+.........+++|+|+||+.+.+ .....+++++++|+||||++...
T Consensus 169 L~~Q~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~I~i~T~~~l~~---~~~~~~~~~~liIiDE~H~~~~~---- 240 (510)
T 2oca_A 169 LTTQMADDFVDYRLFSH-AMIKKIGGGASKDDKYKNDAPVVVGTWQTVVK---QPKEWFSQFGMMMNDECHLATGK---- 240 (510)
T ss_dssp HHHHHHHHHHHTTSSCG-GGEEECGGGCCTTGGGCTTCSEEEEEHHHHTT---SCGGGGGGEEEEEEETGGGCCHH----
T ss_pred HHHHHHHHHHHhhcCCc-cceEEEecCCccccccccCCcEEEEeHHHHhh---chhhhhhcCCEEEEECCcCCCcc----
Confidence 67899999999866655 34555555554433356789999999996543 33456789999999999998652
Q ss_pred ccchhHhhhCCCccceeEEEEeecCchHHHHHH-HhcCCcEEEEEcccc------cccccceeEEEEcC-----------
Q 042003 81 KHIDPVVKACSNPSIVRSLFSATLPDFVEELAR-SIMHDAVRVIVGRKN------TASESIKQKLVFAG----------- 142 (248)
Q Consensus 81 ~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~-~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~----------- 142 (248)
.+..+++. .....+++++|||++........ ..+.++......... .....+........
T Consensus 241 -~~~~il~~-~~~~~~~l~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 318 (510)
T 2oca_A 241 -SISSIISG-LNNCMFKFGLSGSLRDGKANIMQYVGMFGEIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKT 318 (510)
T ss_dssp -HHHHHGGG-CTTCCEEEEEESCGGGCSSCHHHHHHHHCSEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCC
T ss_pred -cHHHHHHh-cccCcEEEEEEeCCCCCcccHHHhHHhhCCeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccc
Confidence 34445555 34567899999999765322111 111122221111110 00001111111110
Q ss_pred ---------CchhHHHHHHHHHhcc---CCCCEEEEecchHHHHHHHHHhhcCCCeeEEEecCCCHHHHHHHHHHhhcCC
Q 042003 143 ---------SEEGKLLALRQSFAES---LNPPVLIFVQSKERAKELYGELAFDGIRAGVIHSDLSQTQRENAVDDFRAGK 210 (248)
Q Consensus 143 ---------~~~~~~~~l~~~~~~~---~~~~~liF~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~ 210 (248)
....+...+.+++... .+++++||++ .++++.+++.|.+.+.++..+||+|+.++|+++++.|++|+
T Consensus 319 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~ 397 (510)
T 2oca_A 319 YQEEIKIITGLSKRNKWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGK 397 (510)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCC
T ss_pred hHHHHHHHhccHHHHHHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCC
Confidence 1112334444444433 3455666666 89999999999998889999999999999999999999999
Q ss_pred ceEEEEe-cccccCCCCCCCcEEEeccCCCCcccceecC
Q 042003 211 TWVLIAT-DVIARGMDFKGVNCVINYDFPDSGAAYIHRI 248 (248)
Q Consensus 211 ~~ilv~T-~~~~~Gidip~~~~Vi~~~~p~~~~~~~qri 248 (248)
.+||||| +++++|+|+|++++||++++|+|+..|.||+
T Consensus 398 ~~vLv~T~~~~~~GiDip~v~~vi~~~~~~s~~~~~Q~~ 436 (510)
T 2oca_A 398 GIIIVASYGVFSTGISVKNLHHVVLAHGVKSKIIVLQTI 436 (510)
T ss_dssp SCEEEEEHHHHHHSCCCCSEEEEEESSCCCSCCHHHHHH
T ss_pred CCEEEEEcChhhcccccccCcEEEEeCCCCCHHHHHHHH
Confidence 9999999 9999999999999999999999999999984
No 35
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.96 E-value=5e-29 Score=228.59 Aligned_cols=230 Identities=18% Similarity=0.120 Sum_probs=166.0
Q ss_pred CcchHHHHHHHhhcCCCcEEEEcccchh---hh----cccccCCCcEEEeChHHHHHHHhcCCcccCceeEEEEeccccc
Q 042003 1 LATQTTRECKKLAKGNKFQIKLMKKELV---RS----TDLSKFSCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKL 73 (248)
Q Consensus 1 L~~Q~~~~~~~~~~~~~~~~~~~~~~~~---~~----~~~~~~~~~i~v~Tp~~l~~~~~~~~~~~~~~~~lIiDEah~~ 73 (248)
||.|+++.++++....+ ..+..+.|.. .. ..+..+.++|+|+||+.+. +...+++++++|+||+|++
T Consensus 664 La~Q~~~~~~~~~~~~~-i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~-----~~~~~~~l~lvIiDEaH~~ 737 (1151)
T 2eyq_A 664 LAQQHYDNFRDRFANWP-VRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ-----SDVKFKDLGLLIVDEEHRF 737 (1151)
T ss_dssp HHHHHHHHHHHHSTTTT-CCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH-----SCCCCSSEEEEEEESGGGS
T ss_pred HHHHHHHHHHHHhhcCC-CeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh-----CCccccccceEEEechHhc
Confidence 68899999998877776 4444444332 11 1223446999999997553 3466899999999999995
Q ss_pred cccCcccccchhHhhhCCCccceeEEEEeecCchHHHHHHHhcCCcEEEEEcccccccccceeEEEEcCCchhHHHHHHH
Q 042003 74 FEVGNLLKHIDPVVKACSNPSIVRSLFSATLPDFVEELARSIMHDAVRVIVGRKNTASESIKQKLVFAGSEEGKLLALRQ 153 (248)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 153 (248)
.. .....++. ...+.++++||||+++...........+...+... ......+...... .........+..
T Consensus 738 g~------~~~~~l~~-l~~~~~vl~lSATp~p~~l~~~~~~~~~~~~i~~~--~~~r~~i~~~~~~-~~~~~i~~~il~ 807 (1151)
T 2eyq_A 738 GV------RHKERIKA-MRANVDILTLTATPIPRTLNMAMSGMRDLSIIATP--PARRLAVKTFVRE-YDSMVVREAILR 807 (1151)
T ss_dssp CH------HHHHHHHH-HHTTSEEEEEESSCCCHHHHHHHTTTSEEEECCCC--CCBCBCEEEEEEE-CCHHHHHHHHHH
T ss_pred Ch------HHHHHHHH-hcCCCCEEEEcCCCChhhHHHHHhcCCCceEEecC--CCCccccEEEEec-CCHHHHHHHHHH
Confidence 32 22333333 23457899999999887776666554443332211 1122233333322 222223333333
Q ss_pred HHhccCCCCEEEEecchHHHHHHHHHhhcC--CCeeEEEecCCCHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCcE
Q 042003 154 SFAESLNPPVLIFVQSKERAKELYGELAFD--GIRAGVIHSDLSQTQRENAVDDFRAGKTWVLIATDVIARGMDFKGVNC 231 (248)
Q Consensus 154 ~~~~~~~~~~liF~~~~~~~~~l~~~L~~~--~~~v~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gidip~~~~ 231 (248)
.+.. +++++|||++++.++.+++.|++. +.++..+||+|+..+|+++++.|++|+.+|||||+++++|+|+|++++
T Consensus 808 ~l~~--g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDip~v~~ 885 (1151)
T 2eyq_A 808 EILR--GGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANT 885 (1151)
T ss_dssp HHTT--TCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCTTEEE
T ss_pred HHhc--CCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeecccCCcE
Confidence 3332 689999999999999999999887 789999999999999999999999999999999999999999999999
Q ss_pred EEeccC-CCCcccceecC
Q 042003 232 VINYDF-PDSGAAYIHRI 248 (248)
Q Consensus 232 Vi~~~~-p~~~~~~~qri 248 (248)
||+++. +++..+|.||+
T Consensus 886 VIi~~~~~~~l~~l~Qr~ 903 (1151)
T 2eyq_A 886 IIIERADHFGLAQLHQLR 903 (1151)
T ss_dssp EEETTTTSSCHHHHHHHH
T ss_pred EEEeCCCCCCHHHHHHHH
Confidence 999998 57888999974
No 36
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.96 E-value=7.4e-29 Score=215.86 Aligned_cols=244 Identities=20% Similarity=0.231 Sum_probs=171.4
Q ss_pred CcchHHHHHHHhhcCCCcEEEEcccchh-hhcccccCCCcEEEeChHHH-HHHHhcC------CcccCceeEEEEecccc
Q 042003 1 LATQTTRECKKLAKGNKFQIKLMKKELV-RSTDLSKFSCDILISTPLRL-RLAIRRK------KIDLSRVEYLVLDEADK 72 (248)
Q Consensus 1 L~~Q~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~v~Tp~~l-~~~~~~~------~~~~~~~~~lIiDEah~ 72 (248)
||.|+++++..+.+.++ .++.+++|+. .+......+++|+|+||++| .+++..+ .+.++.+.++|+||||.
T Consensus 136 LA~qd~e~~~~l~~~lg-l~v~~i~gg~~~~~r~~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~ 214 (844)
T 1tf5_A 136 LASRDAEQMGKIFEFLG-LTVGLNLNSMSKDEKREAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDS 214 (844)
T ss_dssp HHHHHHHHHHHHHHHTT-CCEEECCTTSCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHH
T ss_pred HHHHHHHHHHHHHhhcC-CeEEEEeCCCCHHHHHHhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhh
Confidence 78999999999999999 5566666655 44444456799999999999 5555432 35678999999999999
Q ss_pred cc-ccC--------------cccccchhHhhhCCC--------ccceeE-----------------EEEeecCchHHHHH
Q 042003 73 LF-EVG--------------NLLKHIDPVVKACSN--------PSIVRS-----------------LFSATLPDFVEELA 112 (248)
Q Consensus 73 ~~-~~~--------------~~~~~~~~~~~~~~~--------~~~~~i-----------------~~SAT~~~~~~~~~ 112 (248)
++ +.+ .+...+..+.+.+.. ...|+. ++|||.+.....+.
T Consensus 215 mLiDea~tplIisg~~~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~ 294 (844)
T 1tf5_A 215 ILIDEARTPLIISGQAAKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHIN 294 (844)
T ss_dssp HHTTTTTCEEEEEEEEECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHH
T ss_pred hhhhccccchhhcCCcccchhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHH
Confidence 87 443 134455666666432 345665 67888653222221
Q ss_pred -----HHhcC-CcEEEE-------Ec------------------------------------------------------
Q 042003 113 -----RSIMH-DAVRVI-------VG------------------------------------------------------ 125 (248)
Q Consensus 113 -----~~~~~-~~~~~~-------~~------------------------------------------------------ 125 (248)
..++. +...+. +.
T Consensus 295 ~al~A~~l~~~d~dYiv~dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmT 374 (844)
T 1tf5_A 295 QALKAHVAMQKDVDYVVEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMT 374 (844)
T ss_dssp HHHHHHHTCCBTTTEEEETTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEE
T ss_pred HHHHHHHHhhcCCceEEecCeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCC
Confidence 11221 111110 00
Q ss_pred ---------------------ccccccccceeE-EEEcCCchhHHHHHHHHHhc--cCCCCEEEEecchHHHHHHHHHhh
Q 042003 126 ---------------------RKNTASESIKQK-LVFAGSEEGKLLALRQSFAE--SLNPPVLIFVQSKERAKELYGELA 181 (248)
Q Consensus 126 ---------------------~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~--~~~~~~liF~~~~~~~~~l~~~L~ 181 (248)
+...+.....+. .++ ....+|...+...+.. ..++++||||+|++.++.+++.|.
T Consensus 375 GTa~te~~e~~~iY~l~vv~IPtn~p~~r~d~~d~v~-~~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~ 453 (844)
T 1tf5_A 375 GTAKTEEEEFRNIYNMQVVTIPTNRPVVRDDRPDLIY-RTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLK 453 (844)
T ss_dssp SCCGGGHHHHHHHHCCCEEECCCSSCCCCEECCCEEE-SSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHhCCceEEecCCCCcccccCCcEEE-eCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHH
Confidence 000011111111 233 3556788888877754 236799999999999999999999
Q ss_pred cCCCeeEEEecCCCHHHHHHHHHHhhcCCceEEEEecccccCCCCC--------CCcEEEeccCCCCcccceecC
Q 042003 182 FDGIRAGVIHSDLSQTQRENAVDDFRAGKTWVLIATDVIARGMDFK--------GVNCVINYDFPDSGAAYIHRI 248 (248)
Q Consensus 182 ~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gidip--------~~~~Vi~~~~p~~~~~~~qri 248 (248)
+.|+++.++||+++..++..+.++|+.| .|+|||+++++|+|++ ++.+||+++.|.|...|.||+
T Consensus 454 ~~gi~~~vLhg~~~~rEr~ii~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~ 526 (844)
T 1tf5_A 454 NKGIPHQVLNAKNHEREAQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLR 526 (844)
T ss_dssp TTTCCCEEECSSCHHHHHHHHTTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHH
T ss_pred HCCCCEEEeeCCccHHHHHHHHHcCCCC--eEEEeCCccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhc
Confidence 9999999999999888877666666665 5999999999999999 788999999999999999984
No 37
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.96 E-value=4.5e-29 Score=235.04 Aligned_cols=243 Identities=16% Similarity=0.169 Sum_probs=172.7
Q ss_pred CcchHHHHHHHhhcCCCcEEEEcccchhhhcccccCCCcEEEeChHHHHHHHhcCC--cccCceeEEEEeccccccccCc
Q 042003 1 LATQTTRECKKLAKGNKFQIKLMKKELVRSTDLSKFSCDILISTPLRLRLAIRRKK--IDLSRVEYLVLDEADKLFEVGN 78 (248)
Q Consensus 1 L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Tp~~l~~~~~~~~--~~~~~~~~lIiDEah~~~~~~~ 78 (248)
||.|+++.+++.....| .+|...+|+.........+++|+|+|||++..++.+.. ..+++++++|+||+|.+.+ .
T Consensus 146 La~e~~~~l~~~~~~~g-i~V~~~tGd~~~~~~~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d-~- 222 (1724)
T 4f92_B 146 LVQEMVGSFGKRLATYG-ITVAELTGDHQLCKEEISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHD-D- 222 (1724)
T ss_dssp HHHHHHHHHHHHHTTTT-CCEEECCSSCSSCCTTGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGS-T-
T ss_pred HHHHHHHHHHHHHhhCC-CEEEEEECCCCCCccccCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCC-c-
Confidence 68899999998888888 66777777765544455679999999999877665543 2478999999999998765 3
Q ss_pred ccccchhHhhh------CCCccceeEEEEeecCchHHHHHHHhcCCcE--EEEEcccccccccceeEEEEcCCch--hHH
Q 042003 79 LLKHIDPVVKA------CSNPSIVRSLFSATLPDFVEELARSIMHDAV--RVIVGRKNTASESIKQKLVFAGSEE--GKL 148 (248)
Q Consensus 79 ~~~~~~~~~~~------~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 148 (248)
....++.++.. ....+.|+|++|||+|+ .+++..|+..++. ........ .+..+.+.+....... ...
T Consensus 223 RG~~lE~~l~rl~~~~~~~~~~~riI~LSATl~N-~~dvA~wL~~~~~~~~~~~~~~~-RPvpL~~~~~~~~~~~~~~~~ 300 (1724)
T 4f92_B 223 RGPVLEALVARAIRNIEMTQEDVRLIGLSATLPN-YEDVATFLRVDPAKGLFYFDNSF-RPVPLEQTYVGITEKKAIKRF 300 (1724)
T ss_dssp THHHHHHHHHHHHHHHHHHTCCCEEEEEECSCTT-HHHHHHHTTCCHHHHEEECCGGG-CSSCEEEECCEECCCCHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhCCCCCcEEEEecccCC-HHHHHHHhCCCCCCCeEEECCCC-ccCccEEEEeccCCcchhhhh
Confidence 44444433321 13567899999999987 6777777755431 12222222 2233444333222221 122
Q ss_pred H----HHHHHHhc-cCCCCEEEEecchHHHHHHHHHhhc-------------------------------------CCCe
Q 042003 149 L----ALRQSFAE-SLNPPVLIFVQSKERAKELYGELAF-------------------------------------DGIR 186 (248)
Q Consensus 149 ~----~l~~~~~~-~~~~~~liF~~~~~~~~~l~~~L~~-------------------------------------~~~~ 186 (248)
. .+.+.+.. ..++++||||+|++.|+.+++.|.+ ...+
T Consensus 301 ~~~~~~~~~~v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~G 380 (1724)
T 4f92_B 301 QIMNEIVYEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYG 380 (1724)
T ss_dssp HHHHHHHHHHHTTCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcC
Confidence 2 22223333 3357999999999999988887742 1245
Q ss_pred eEEEecCCCHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCcEEEe----ccC------CCCcccceecC
Q 042003 187 AGVIHSDLSQTQRENAVDDFRAGKTWVLIATDVIARGMDFKGVNCVIN----YDF------PDSGAAYIHRI 248 (248)
Q Consensus 187 v~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gidip~~~~Vi~----~~~------p~~~~~~~qri 248 (248)
++++||||++++|..+++.|++|.++|||||++++.|||+|..++||. |++ |-++.+|+||+
T Consensus 381 va~HHagL~~~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~ 452 (1724)
T 4f92_B 381 FAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQML 452 (1724)
T ss_dssp EEEECSSSCTHHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHH
T ss_pred EEEEcCCCCHHHHHHHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhh
Confidence 899999999999999999999999999999999999999999999985 443 45788899984
No 38
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.96 E-value=1.2e-29 Score=223.57 Aligned_cols=229 Identities=17% Similarity=0.187 Sum_probs=155.4
Q ss_pred CcchHHHHHHHhhcCCCcEEEEcccchhhhc-------ccccCCCcEEEeChHHHHHHHhcCCcccCceeEEEEeccccc
Q 042003 1 LATQTTRECKKLAKGNKFQIKLMKKELVRST-------DLSKFSCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKL 73 (248)
Q Consensus 1 L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~i~v~Tp~~l~~~~~~~~~~~~~~~~lIiDEah~~ 73 (248)
||.|+++.++++.+..+ ..+..+.|+.... ....+.++|+|+||+.+.+ ...+.+++++|+||+|++
T Consensus 429 La~Q~~~~l~~~~~~~g-i~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~~~~~~l~lVVIDEaHr~ 502 (780)
T 1gm5_A 429 LAIQHYRRTVESFSKFN-IHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE-----DVHFKNLGLVIIDEQHRF 502 (780)
T ss_dssp HHHHHHHHHHHHHTCSS-CCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH-----CCCCSCCCEEEEESCCCC
T ss_pred HHHHHHHHHHHHhhhcC-ceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh-----hhhccCCceEEecccchh
Confidence 68899999999998877 5566666655221 1233469999999987744 456789999999999997
Q ss_pred cccCcccccchhHhhhCCCccceeEEEEeecCchHHHHHHHhcCCcEEEEEcccccccccceeEEEEcCCchhHHHHHHH
Q 042003 74 FEVGNLLKHIDPVVKACSNPSIVRSLFSATLPDFVEELARSIMHDAVRVIVGRKNTASESIKQKLVFAGSEEGKLLALRQ 153 (248)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 153 (248)
.... +..+ .. ....+++++||||+.+...... +.++...............+..... ... +...+.+
T Consensus 503 g~~q--r~~l---~~--~~~~~~vL~mSATp~p~tl~~~--~~g~~~~s~i~~~p~~r~~i~~~~~---~~~-~~~~l~~ 569 (780)
T 1gm5_A 503 GVKQ--REAL---MN--KGKMVDTLVMSATPIPRSMALA--FYGDLDVTVIDEMPPGRKEVQTMLV---PMD-RVNEVYE 569 (780)
T ss_dssp -------CCC---CS--SSSCCCEEEEESSCCCHHHHHH--HTCCSSCEEECCCCSSCCCCEECCC---CSS-THHHHHH
T ss_pred hHHH--HHHH---HH--hCCCCCEEEEeCCCCHHHHHHH--HhCCcceeeeeccCCCCcceEEEEe---ccc-hHHHHHH
Confidence 4322 1111 11 2246789999999887554443 3343322222211111122222221 111 2222233
Q ss_pred HHhc--cCCCCEEEEecchH--------HHHHHHHHhhc---CCCeeEEEecCCCHHHHHHHHHHhhcCCceEEEEeccc
Q 042003 154 SFAE--SLNPPVLIFVQSKE--------RAKELYGELAF---DGIRAGVIHSDLSQTQRENAVDDFRAGKTWVLIATDVI 220 (248)
Q Consensus 154 ~~~~--~~~~~~liF~~~~~--------~~~~l~~~L~~---~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~ 220 (248)
.+.. ..+++++|||++.+ .++.+++.|++ .+..+..+||+|++++|+++++.|++|+.+|||||+++
T Consensus 570 ~i~~~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vi 649 (780)
T 1gm5_A 570 FVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVI 649 (780)
T ss_dssp HHHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCC
T ss_pred HHHHHHhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCC
Confidence 3322 22679999999654 57888999988 47899999999999999999999999999999999999
Q ss_pred ccCCCCCCCcEEEeccCCC-CcccceecC
Q 042003 221 ARGMDFKGVNCVINYDFPD-SGAAYIHRI 248 (248)
Q Consensus 221 ~~Gidip~~~~Vi~~~~p~-~~~~~~qri 248 (248)
++|+|+|++++||++++|. +..+|.||+
T Consensus 650 e~GIDiP~v~~VIi~d~~r~~l~~l~Qr~ 678 (780)
T 1gm5_A 650 EVGIDVPRANVMVIENPERFGLAQLHQLR 678 (780)
T ss_dssp CSCSCCTTCCEEEBCSCSSSCTTHHHHHH
T ss_pred CccccCCCCCEEEEeCCCCCCHHHHHHHh
Confidence 9999999999999999996 677777863
No 39
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.96 E-value=1.4e-28 Score=231.67 Aligned_cols=244 Identities=16% Similarity=0.144 Sum_probs=170.7
Q ss_pred CcchHHHHHHH-hhcCCCcEEEEcccchhhhcccccCCCcEEEeChHHHHHHHhcC--CcccCceeEEEEeccccccccC
Q 042003 1 LATQTTRECKK-LAKGNKFQIKLMKKELVRSTDLSKFSCDILISTPLRLRLAIRRK--KIDLSRVEYLVLDEADKLFEVG 77 (248)
Q Consensus 1 L~~Q~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Tp~~l~~~~~~~--~~~~~~~~~lIiDEah~~~~~~ 77 (248)
||.|.++.+++ +++..+ .+|...+|+.........+++|+|+|||++..++.+. ...+++++++|+||+|.+.+.
T Consensus 984 La~q~~~~~~~~f~~~~g-~~V~~ltGd~~~~~~~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d~- 1061 (1724)
T 4f92_B 984 LAEQVYMDWYEKFQDRLN-KKVVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGE- 1061 (1724)
T ss_dssp HHHHHHHHHHHHHTTTSC-CCEEECCSCHHHHHHHHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGST-
T ss_pred HHHHHHHHHHHHhchhcC-CEEEEEECCCCcchhhcCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCCC-
Confidence 57888888765 677777 5666777766444334457899999999998777653 335789999999999998763
Q ss_pred cccccchhHhhh------CCCccceeEEEEeecCchHHHHHHHhcCCcEEEEEcccccccccceeEEEEcCCch--hHH-
Q 042003 78 NLLKHIDPVVKA------CSNPSIVRSLFSATLPDFVEELARSIMHDAVRVIVGRKNTASESIKQKLVFAGSEE--GKL- 148 (248)
Q Consensus 78 ~~~~~~~~~~~~------~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~- 148 (248)
....+..++.. ..+.+.|+|++|||+++ ..++..|+..++.....-.....+..+..++....... .+.
T Consensus 1062 -rg~~le~il~rl~~i~~~~~~~~riI~lSATl~N-~~dla~WL~~~~~~~~~~~~~~RPvpL~~~i~~~~~~~~~~~~~ 1139 (1724)
T 4f92_B 1062 -NGPVLEVICSRMRYISSQIERPIRIVALSSSLSN-AKDVAHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLL 1139 (1724)
T ss_dssp -THHHHHHHHHHHHHHHHTTSSCCEEEEEESCBTT-HHHHHHHHTCCSTTEEECCGGGCSSCEEEEEEEECCCSHHHHHH
T ss_pred -CCccHHHHHHHHHHHHhhcCCCceEEEEeCCCCC-HHHHHHHhCCCCCCeEEeCCCCCCCCeEEEEEeccCCCchhhhh
Confidence 33333333221 14567899999999987 67788887554433322223333334444433322221 111
Q ss_pred ---HHHHHHH-hccCCCCEEEEecchHHHHHHHHHhhc----------------------------------CCCeeEEE
Q 042003 149 ---LALRQSF-AESLNPPVLIFVQSKERAKELYGELAF----------------------------------DGIRAGVI 190 (248)
Q Consensus 149 ---~~l~~~~-~~~~~~~~liF~~~~~~~~~l~~~L~~----------------------------------~~~~v~~~ 190 (248)
..+...+ ....+++++|||+|++.|+.++..|.. ...+++++
T Consensus 1140 ~~~~~~~~~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~h 1219 (1724)
T 4f92_B 1140 SMAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYL 1219 (1724)
T ss_dssp TTHHHHHHHHHHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEE
T ss_pred hhcchHHHHHHHhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEE
Confidence 1122222 233467999999999999988876632 02468999
Q ss_pred ecCCCHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCcEEEe----------ccCCCCcccceecC
Q 042003 191 HSDLSQTQRENAVDDFRAGKTWVLIATDVIARGMDFKGVNCVIN----------YDFPDSGAAYIHRI 248 (248)
Q Consensus 191 ~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gidip~~~~Vi~----------~~~p~~~~~~~qri 248 (248)
||+|++++|+.+++.|++|.++|||||+++++|+|+|+.++||. ...|.++.+|+||+
T Consensus 1220 HagL~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~ 1287 (1724)
T 4f92_B 1220 HEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMV 1287 (1724)
T ss_dssp CTTSCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhh
Confidence 99999999999999999999999999999999999999888883 23466788898874
No 40
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.95 E-value=4.9e-29 Score=220.65 Aligned_cols=208 Identities=19% Similarity=0.234 Sum_probs=155.4
Q ss_pred ccccCCCcEEEeChHHHHHHHhcCCcccCceeEEEEecccc-ccccCcccccchhHhhhCCCccceeEEEEeecCchHHH
Q 042003 32 DLSKFSCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADK-LFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPDFVEE 110 (248)
Q Consensus 32 ~~~~~~~~i~v~Tp~~l~~~~~~~~~~~~~~~~lIiDEah~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~ 110 (248)
.....+.+|+++||+++.+.+... ..+.+++++|+||+|. .++.......+..+.... +..++++||||++. ..
T Consensus 180 ~~~~~~~~I~v~T~G~l~r~l~~~-~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~--~~~~iIl~SAT~~~--~~ 254 (773)
T 2xau_A 180 NKTSNKTILKYMTDGMLLREAMED-HDLSRYSCIILDEAHERTLATDILMGLLKQVVKRR--PDLKIIIMSATLDA--EK 254 (773)
T ss_dssp EECCTTCSEEEEEHHHHHHHHHHS-TTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHC--TTCEEEEEESCSCC--HH
T ss_pred cccCCCCCEEEECHHHHHHHHhhC-ccccCCCEEEecCccccccchHHHHHHHHHHHHhC--CCceEEEEeccccH--HH
Confidence 334567899999999999888765 3479999999999996 444332344555555542 46899999999975 34
Q ss_pred HHHHhcCCcEEEEEcccccccccceeEEEEcCCch---hHHHHHHHHHhccCCCCEEEEecchHHHHHHHHHhhc-----
Q 042003 111 LARSIMHDAVRVIVGRKNTASESIKQKLVFAGSEE---GKLLALRQSFAESLNPPVLIFVQSKERAKELYGELAF----- 182 (248)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~liF~~~~~~~~~l~~~L~~----- 182 (248)
+.. ++.+...+...... ..+..++......+ .....+..+.....++++||||+++++++.+++.|++
T Consensus 255 l~~-~~~~~~vi~v~gr~---~pv~~~~~~~~~~~~~~~~l~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l 330 (773)
T 2xau_A 255 FQR-YFNDAPLLAVPGRT---YPVELYYTPEFQRDYLDSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQL 330 (773)
T ss_dssp HHH-HTTSCCEEECCCCC---CCEEEECCSSCCSCHHHHHHHHHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHH
T ss_pred HHH-HhcCCCcccccCcc---cceEEEEecCCchhHHHHHHHHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhh
Confidence 444 44444334333222 23333332222222 2233444454444578999999999999999999975
Q ss_pred ------CCCeeEEEecCCCHHHHHHHHHHhh-----cCCceEEEEecccccCCCCCCCcEEEeccC--------------
Q 042003 183 ------DGIRAGVIHSDLSQTQRENAVDDFR-----AGKTWVLIATDVIARGMDFKGVNCVINYDF-------------- 237 (248)
Q Consensus 183 ------~~~~v~~~~~~~~~~~r~~~~~~f~-----~g~~~ilv~T~~~~~Gidip~~~~Vi~~~~-------------- 237 (248)
.++.+..+||+|++++|..+++.|+ +|+.+|||||+++++|+|+|++++||++|.
T Consensus 331 ~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~ 410 (773)
T 2xau_A 331 VREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVES 410 (773)
T ss_dssp HHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEE
T ss_pred cccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccc
Confidence 5788999999999999999999999 999999999999999999999999999888
Q ss_pred ----CCCcccceecC
Q 042003 238 ----PDSGAAYIHRI 248 (248)
Q Consensus 238 ----p~~~~~~~qri 248 (248)
|.|..+|.||+
T Consensus 411 L~~~p~S~~s~~QR~ 425 (773)
T 2xau_A 411 LLVSPISKASAQQRA 425 (773)
T ss_dssp EEEEECCHHHHHHHH
T ss_pred cccccCCHHHHHhhc
Confidence 88999999984
No 41
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.95 E-value=1.4e-27 Score=207.46 Aligned_cols=245 Identities=17% Similarity=0.173 Sum_probs=154.6
Q ss_pred CcchHHHHHHHhhcCCCcEEEEcccchh-hhcccccCCCcEEEeChHHH-HHHHhcC------CcccCceeEEEEecccc
Q 042003 1 LATQTTRECKKLAKGNKFQIKLMKKELV-RSTDLSKFSCDILISTPLRL-RLAIRRK------KIDLSRVEYLVLDEADK 72 (248)
Q Consensus 1 L~~Q~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~v~Tp~~l-~~~~~~~------~~~~~~~~~lIiDEah~ 72 (248)
||.|+++++..+.+.++ .++.+++|+. .+......+++|+||||++| .+++..+ ...+++++++|+||||.
T Consensus 127 LA~Q~~e~~~~l~~~lg-l~v~~i~GG~~~~~r~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~ 205 (853)
T 2fsf_A 127 LAQRDAENNRPLFEFLG-LTVGINLPGMPAPAKREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDS 205 (853)
T ss_dssp HHHHHHHHHHHHHHHTT-CCEEECCTTCCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHH
T ss_pred HHHHHHHHHHHHHHhcC-CeEEEEeCCCCHHHHHHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHH
Confidence 78999999999999999 5556666655 33344455799999999999 6777654 25679999999999998
Q ss_pred cc-ccC--------------cccccchhHhhhCCC-------------------ccceeE--------------------
Q 042003 73 LF-EVG--------------NLLKHIDPVVKACSN-------------------PSIVRS-------------------- 98 (248)
Q Consensus 73 ~~-~~~--------------~~~~~~~~~~~~~~~-------------------~~~~~i-------------------- 98 (248)
++ +.+ .+...+..+...+.. ...|+.
T Consensus 206 mLiD~a~tpLIiSg~~~~~~~~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~ 285 (853)
T 2fsf_A 206 ILIDEARTPLIISGPAEDSSEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMD 285 (853)
T ss_dssp HTTTTTTCEEEEEEC-----------------------------------------------------------------
T ss_pred HHHhcCcccccccCCCccchhHHHHHHHHHHhchhhhccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCccc
Confidence 87 332 134555566555432 134433
Q ss_pred ----EEEeecCchHHHHH-----HHhcCCc-------------------------------------EEEEEcccccccc
Q 042003 99 ----LFSATLPDFVEELA-----RSIMHDA-------------------------------------VRVIVGRKNTASE 132 (248)
Q Consensus 99 ----~~SAT~~~~~~~~~-----~~~~~~~-------------------------------------~~~~~~~~~~~~~ 132 (248)
++|||.++....+. ..++... ..+.+........
T Consensus 286 ~~~~Lfsat~~~~~~~i~~al~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e~~tla 365 (853)
T 2fsf_A 286 EGESLYSPANIMLMHHVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLA 365 (853)
T ss_dssp -----------------------------------------------------------------------CCCCCEEEE
T ss_pred ccccccCcccchHHHHHHHHHHHHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccceecccccccc
Confidence 78888654222111 0111100 0111111111111
Q ss_pred cce----------------------------------------------eEEEEcCCchhHHHHHHHHHhc--cCCCCEE
Q 042003 133 SIK----------------------------------------------QKLVFAGSEEGKLLALRQSFAE--SLNPPVL 164 (248)
Q Consensus 133 ~~~----------------------------------------------~~~~~~~~~~~~~~~l~~~~~~--~~~~~~l 164 (248)
.+. +..........|...+.+.+.. ..+.++|
T Consensus 366 ~It~qnyfr~Y~kl~GmTGTa~te~~ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~~~~~K~~al~~~i~~~~~~gqpvL 445 (853)
T 2fsf_A 366 SITFQNYFRLYEKLAGMTGTADTEAFEFSSIYKLDTVVVPTNRPMIRKDLPDLVYMTEAEKIQAIIEDIKERTAKGQPVL 445 (853)
T ss_dssp EEEHHHHHTTSSEEEEEECTTCCCHHHHHHHHCCEEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHTTTCCEE
T ss_pred eeehHHHHhhhhhhhcCCCCchhHHHHHHHHhCCcEEEcCCCCCceeecCCcEEEeCHHHHHHHHHHHHHHHhcCCCCEE
Confidence 111 1111223556788888887754 2367999
Q ss_pred EEecchHHHHHHHHHhhcCCCeeEEEecCCCHHHHHHHHHHhhcCCceEEEEecccccCCCCCCC---------------
Q 042003 165 IFVQSKERAKELYGELAFDGIRAGVIHSDLSQTQRENAVDDFRAGKTWVLIATDVIARGMDFKGV--------------- 229 (248)
Q Consensus 165 iF~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gidip~~--------------- 229 (248)
|||+|++.++.+++.|++.|+++.++||.+...++..+.++|+.| .|+|||+.+++|+||+..
T Consensus 446 Vft~sie~se~Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~ 523 (853)
T 2fsf_A 446 VGTISIEKSELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVLGGSWQAEVAALENPTA 523 (853)
T ss_dssp EEESSHHHHHHHHHHHHHTTCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCCS
T ss_pred EEECcHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCccCCCchHhhhhhcccchh
Confidence 999999999999999999999999999998888888888889888 599999999999999974
Q ss_pred ----------------------cEEEeccCCCCcccceecC
Q 042003 230 ----------------------NCVINYDFPDSGAAYIHRI 248 (248)
Q Consensus 230 ----------------------~~Vi~~~~p~~~~~~~qri 248 (248)
.+||+++.|.|...|.||+
T Consensus 524 ~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~ 564 (853)
T 2fsf_A 524 EQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLR 564 (853)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhc
Confidence 5999999999999999984
No 42
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.94 E-value=1e-28 Score=209.16 Aligned_cols=223 Identities=18% Similarity=0.209 Sum_probs=155.6
Q ss_pred CcchHHHHHHHhhcCCCcEEEEcccchhhhcccccCCCcEEEeChHHHHHHHhcCCcccCceeEEEEeccccccccCccc
Q 042003 1 LATQTTRECKKLAKGNKFQIKLMKKELVRSTDLSKFSCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEVGNLL 80 (248)
Q Consensus 1 L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Tp~~l~~~~~~~~~~~~~~~~lIiDEah~~~~~~~~~ 80 (248)
|+.|+.+.++++ +...+..+.|+.. ..++|+|+||+.+...... ...+++++|+||||++.+.+ +.
T Consensus 145 L~~Q~~~~~~~~----~~~~v~~~~g~~~------~~~~Ivv~T~~~l~~~~~~---~~~~~~liIvDEaH~~~~~~-~~ 210 (472)
T 2fwr_A 145 LAEQWKERLGIF----GEEYVGEFSGRIK------ELKPLTVSTYDSAYVNAEK---LGNRFMLLIFDEVHHLPAES-YV 210 (472)
T ss_dssp HHHHHHHHGGGG----CGGGEEEBSSSCB------CCCSEEEEEHHHHHHTHHH---HTTTCSEEEEETGGGTTSTT-TH
T ss_pred HHHHHHHHHHhC----CCcceEEECCCcC------CcCCEEEEEcHHHHHHHHH---hcCCCCEEEEECCcCCCChH-HH
Confidence 467777777774 4231455555432 2478999999998776642 12468999999999988765 43
Q ss_pred ccchhHhhhCCCccceeEEEEeecCc-------------------hHHHHHHHhcCCcEEE--EEccccc----------
Q 042003 81 KHIDPVVKACSNPSIVRSLFSATLPD-------------------FVEELARSIMHDAVRV--IVGRKNT---------- 129 (248)
Q Consensus 81 ~~~~~~~~~~~~~~~~~i~~SAT~~~-------------------~~~~~~~~~~~~~~~~--~~~~~~~---------- 129 (248)
.+.+.+ ...+++++|||+.. ...++...++..+... .......
T Consensus 211 ----~~~~~~--~~~~~l~lSATp~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (472)
T 2fwr_A 211 ----QIAQMS--IAPFRLGLTATFEREDGRHEILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREK 284 (472)
T ss_dssp ----HHHHTC--CCSEEEEEESCCCCTTSGGGSHHHHTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTH
T ss_pred ----HHHHhc--CCCeEEEEecCccCCCCHHHHHHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHH
Confidence 344442 35678999999873 1222222222222111 1110000
Q ss_pred --------------ccccceeEEE--------------------EcCCchhHHHHHHHHHhccCCCCEEEEecchHHHHH
Q 042003 130 --------------ASESIKQKLV--------------------FAGSEEGKLLALRQSFAESLNPPVLIFVQSKERAKE 175 (248)
Q Consensus 130 --------------~~~~~~~~~~--------------------~~~~~~~~~~~l~~~~~~~~~~~~liF~~~~~~~~~ 175 (248)
....+...+. .......|...+.+++....++++||||++.+.++.
T Consensus 285 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~k~lvF~~~~~~~~~ 364 (472)
T 2fwr_A 285 VYKQFLRARGITLRRAEDFNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILERHRKDKIIIFTRHNELVYR 364 (472)
T ss_dssp HHHSCSSSCCCTTTCCSSSTTTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHHTSSSCBCCBCSCHHHHHH
T ss_pred HHHHHHHhcCccccchhhHHHHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHhCCCCcEEEEECCHHHHHH
Confidence 0000000000 001233577888888888778899999999999999
Q ss_pred HHHHhhcCCCeeEEEecCCCHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCcEEEeccCCCCcccceecC
Q 042003 176 LYGELAFDGIRAGVIHSDLSQTQRENAVDDFRAGKTWVLIATDVIARGMDFKGVNCVINYDFPDSGAAYIHRI 248 (248)
Q Consensus 176 l~~~L~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~qri 248 (248)
+++.|. +..+||+++..+|+++++.|++|+.+|||||+++++|+|+|++++||++++|+|+..|.||+
T Consensus 365 l~~~l~-----~~~~~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~ 432 (472)
T 2fwr_A 365 ISKVFL-----IPAITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRL 432 (472)
T ss_dssp HHHHTT-----CCBCCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHH
T ss_pred HHHHhC-----cceeeCCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHH
Confidence 999984 66789999999999999999999999999999999999999999999999999999999984
No 43
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.94 E-value=5.9e-28 Score=202.85 Aligned_cols=187 Identities=12% Similarity=0.081 Sum_probs=136.4
Q ss_pred cCCCcEEEeChHHHHHHHhcCCcccCceeEEEEeccccccccCcccccchhHhhhCCCccceeEEEEeecCchHHHHHHH
Q 042003 35 KFSCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPDFVEELARS 114 (248)
Q Consensus 35 ~~~~~i~v~Tp~~l~~~~~~~~~~~~~~~~lIiDEah~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~ 114 (248)
..+..+.++|++.+.+.+.+. ..+.+++++|+||||++ +.. +...+..+......++.|+++||||+++.....
T Consensus 85 ~~~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~~-~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~--- 158 (451)
T 2jlq_A 85 TGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DPC-SVAARGYISTRVEMGEAAAIFMTATPPGSTDPF--- 158 (451)
T ss_dssp CSSCCEEEEEHHHHHHHHHHC-SCCCCCSEEEEETTTCC-SHH-HHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSS---
T ss_pred CCCceEEEEChHHHHHHhhCc-ccccCCCEEEEeCCccC-Ccc-hHHHHHHHHHhhcCCCceEEEEccCCCccchhh---
Confidence 345689999999998888654 45789999999999987 322 222232333222345789999999998744322
Q ss_pred hcCCcEEEEEcccccccccceeEEEEcCCchhHHHHHHHHHhccCCCCEEEEecchHHHHHHHHHhhcCCCeeEEEecCC
Q 042003 115 IMHDAVRVIVGRKNTASESIKQKLVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKERAKELYGELAFDGIRAGVIHSDL 194 (248)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~liF~~~~~~~~~l~~~L~~~~~~v~~~~~~~ 194 (248)
+..++..+.... ..+.. .+ .. +...+... .+++||||+++++++.+++.|++.++.+..+||++
T Consensus 159 ~~~~~~~~~~~~-~~p~~---~~-------~~----~~~~l~~~-~~~~lVF~~s~~~a~~l~~~L~~~g~~~~~lh~~~ 222 (451)
T 2jlq_A 159 PQSNSPIEDIER-EIPER---SW-------NT----GFDWITDY-QGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKT 222 (451)
T ss_dssp CCCSSCEEEEEC-CCCSS---CC-------SS----SCHHHHHC-CSCEEEECSSHHHHHHHHHHHHTTTCCEEEECTTT
T ss_pred hcCCCceEecCc-cCCch---hh-------HH----HHHHHHhC-CCCEEEEcCCHHHHHHHHHHHHHcCCeEEECCHHH
Confidence 223333332221 11100 00 00 11222333 57999999999999999999999999999999975
Q ss_pred CHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCcEEEecc--------------------CCCCcccceecC
Q 042003 195 SQTQRENAVDDFRAGKTWVLIATDVIARGMDFKGVNCVINYD--------------------FPDSGAAYIHRI 248 (248)
Q Consensus 195 ~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gidip~~~~Vi~~~--------------------~p~~~~~~~qri 248 (248)
. +.+++.|++|+.+|||||+++++|+|+|+ ++||++| .|.|..+|+||+
T Consensus 223 ~----~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~ 291 (451)
T 2jlq_A 223 F----DTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRR 291 (451)
T ss_dssp H----HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHH
T ss_pred H----HHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCcccccccccccceeeecccccCCHHHHHHhc
Confidence 4 57899999999999999999999999999 9999999 999999999984
No 44
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.94 E-value=3.9e-27 Score=204.51 Aligned_cols=210 Identities=12% Similarity=0.096 Sum_probs=132.2
Q ss_pred ccCCCcEEEeChHHHHHHHhc----CCcccCceeEEEEeccccccccCcccccchhHhhhCCCccceeEEEEeecCchHH
Q 042003 34 SKFSCDILISTPLRLRLAIRR----KKIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPDFVE 109 (248)
Q Consensus 34 ~~~~~~i~v~Tp~~l~~~~~~----~~~~~~~~~~lIiDEah~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~ 109 (248)
...+.+|+|+||+++...... ..+...++++||+||||++...+ ...+..++..+. ..+++++|||+.....
T Consensus 271 ~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~--~~~~~~il~~~~--~~~~l~lTATP~~~~~ 346 (590)
T 3h1t_A 271 VVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARD--NSNWREILEYFE--PAFQIGMTATPLREDN 346 (590)
T ss_dssp CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC-----------CHHHHHHST--TSEEEEEESSCSCTTT
T ss_pred CCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccc--hHHHHHHHHhCC--cceEEEeccccccccc
Confidence 345789999999999887642 23446779999999999986542 245566666643 3578999999875443
Q ss_pred HHHHHhcCCcEEEEEccc---ccccccceeEEE----------------------------EcCCch------hH----H
Q 042003 110 ELARSIMHDAVRVIVGRK---NTASESIKQKLV----------------------------FAGSEE------GK----L 148 (248)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~----------------------------~~~~~~------~~----~ 148 (248)
.....+++.+........ ............ ...... .+ .
T Consensus 347 ~~~~~~f~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~i~ 426 (590)
T 3h1t_A 347 RDTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDRFGREIPDGEYQTKDFERVIALKARTDAFA 426 (590)
T ss_dssp HHHHHHSCSCSEEECHHHHHHHTSSCCEEEEEEEETTCC-----------------------CCSHHHHHHHHHTHHHHH
T ss_pred hhHHHHcCCceEecCHHHHhhCCccCCcEEEEeeeeeeccccccccccccccccccccccCCHHHhhhHhcChHHHHHHH
Confidence 333334443222110000 000000000000 000000 11 1
Q ss_pred HHHHHHHhcc-CCCCEEEEecchHHHHHHHHHhhcCCC--------eeEEEecCCCHHHHHHHHHHhhcCCce---EEEE
Q 042003 149 LALRQSFAES-LNPPVLIFVQSKERAKELYGELAFDGI--------RAGVIHSDLSQTQRENAVDDFRAGKTW---VLIA 216 (248)
Q Consensus 149 ~~l~~~~~~~-~~~~~liF~~~~~~~~~l~~~L~~~~~--------~v~~~~~~~~~~~r~~~~~~f~~g~~~---ilv~ 216 (248)
..+.+.+... ..+++||||+++++|+.+++.|.+.+. .+..+||+++. +|+++++.|++|+.+ |+||
T Consensus 427 ~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~-~r~~~l~~F~~~~~~~~~ilvt 505 (590)
T 3h1t_A 427 KHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGK-IGKGHLSRFQELETSTPVILTT 505 (590)
T ss_dssp HHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHH-HHHHHHHHHHCTTCCCCCEEEE
T ss_pred HHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChH-HHHHHHHHHhCCCCCCCEEEEE
Confidence 2233334432 357999999999999999999976543 37788998764 799999999998766 8899
Q ss_pred ecccccCCCCCCCcEEEeccCCCCcccceecC
Q 042003 217 TDVIARGMDFKGVNCVINYDFPDSGAAYIHRI 248 (248)
Q Consensus 217 T~~~~~Gidip~~~~Vi~~~~p~~~~~~~qri 248 (248)
|+++++|+|+|++++||++++|+|+..|+||+
T Consensus 506 t~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~i 537 (590)
T 3h1t_A 506 SQLLTTGVDAPTCKNVVLARVVNSMSEFKQIV 537 (590)
T ss_dssp SSTTTTTCCCTTEEEEEEESCCCCHHHHHHHH
T ss_pred CChhhcCccchheeEEEEEecCCChHHHHHHH
Confidence 99999999999999999999999999999985
No 45
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.94 E-value=3.4e-26 Score=199.28 Aligned_cols=244 Identities=19% Similarity=0.183 Sum_probs=175.1
Q ss_pred CcchHHHHHHHhhcCCCcEEEEcccchh-hhcccccCCCcEEEeChHHH-HHHHhcC------CcccCceeEEEEecccc
Q 042003 1 LATQTTRECKKLAKGNKFQIKLMKKELV-RSTDLSKFSCDILISTPLRL-RLAIRRK------KIDLSRVEYLVLDEADK 72 (248)
Q Consensus 1 L~~Q~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~v~Tp~~l-~~~~~~~------~~~~~~~~~lIiDEah~ 72 (248)
||.|.++++..+.+.++ +++.+++|+. .+......+++|+++||+.| .+++..+ ...++.+.++|+||||.
T Consensus 164 LA~Qdae~m~~l~~~lG-Lsv~~i~gg~~~~~r~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDs 242 (922)
T 1nkt_A 164 LAKRDSEWMGRVHRFLG-LQVGVILATMTPDERRVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDS 242 (922)
T ss_dssp HHHHHHHHHHHHHHHTT-CCEEECCTTCCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHH
T ss_pred HHHHHHHHHHHHHhhcC-CeEEEEeCCCCHHHHHHhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHH
Confidence 78999999999999999 5666666655 44444455799999999999 6666543 35678999999999998
Q ss_pred cc-ccC--------------cccccchhHhhhCCC--------ccceeE-----------------EEEeecCchHHHHH
Q 042003 73 LF-EVG--------------NLLKHIDPVVKACSN--------PSIVRS-----------------LFSATLPDFVEELA 112 (248)
Q Consensus 73 ~~-~~~--------------~~~~~~~~~~~~~~~--------~~~~~i-----------------~~SAT~~~~~~~~~ 112 (248)
++ +.+ .+...+..+...+.. ...|+. ++|||.++....+.
T Consensus 243 mLiDeartPLiiSg~~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~ 322 (922)
T 1nkt_A 243 ILIDEARTPLIISGPADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLN 322 (922)
T ss_dssp HHTTGGGSCEEEEEECCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHH
T ss_pred HHHhcCccceeecCCCCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHH
Confidence 87 321 255667777777542 566776 77888765333221
Q ss_pred H-----HhcC-Cc-------EEEEEc------------------------------------------------------
Q 042003 113 R-----SIMH-DA-------VRVIVG------------------------------------------------------ 125 (248)
Q Consensus 113 ~-----~~~~-~~-------~~~~~~------------------------------------------------------ 125 (248)
. .++. +. ..+.+.
T Consensus 323 ~aL~A~~l~~~d~dYiV~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMT 402 (922)
T 1nkt_A 323 NALKAKELFSRDKDYIVRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMT 402 (922)
T ss_dssp HHHHHHHHCCBTTTEEECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEE
T ss_pred HHHHHHHHhhcccceeeecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccc
Confidence 1 1222 11 111000
Q ss_pred ---------------------cccccccccee-EEEEcCCchhHHHHHHHHHhcc--CCCCEEEEecchHHHHHHHHHhh
Q 042003 126 ---------------------RKNTASESIKQ-KLVFAGSEEGKLLALRQSFAES--LNPPVLIFVQSKERAKELYGELA 181 (248)
Q Consensus 126 ---------------------~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~--~~~~~liF~~~~~~~~~l~~~L~ 181 (248)
+...+.....+ ..++ .....|...+...+... .++++||||+|++.++.+++.|+
T Consensus 403 GTa~te~~Ef~~iY~l~vv~IPtn~p~~R~d~~d~v~-~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~ 481 (922)
T 1nkt_A 403 GTAQTEAAELHEIYKLGVVSIPTNMPMIREDQSDLIY-KTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFT 481 (922)
T ss_dssp SCCGGGHHHHHHHHCCEEEECCCSSCCCCEECCCEEE-SCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHH
T ss_pred cCchhHHHHHHHHhCCCeEEeCCCCCcccccCCcEEE-eCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHH
Confidence 00000001111 1233 34567888888777542 36799999999999999999999
Q ss_pred cCCCeeEEEecCCCHHHHHHHHHHhhcCCceEEEEecccccCCCCCCC--------------------------------
Q 042003 182 FDGIRAGVIHSDLSQTQRENAVDDFRAGKTWVLIATDVIARGMDFKGV-------------------------------- 229 (248)
Q Consensus 182 ~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gidip~~-------------------------------- 229 (248)
+.|+++.++||.+...++..+.++|+.| .|+|||+.+++|+||+..
T Consensus 482 ~~Gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 559 (922)
T 1nkt_A 482 KRRIPHNVLNAKYHEQEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSE 559 (922)
T ss_dssp HTTCCCEEECSSCHHHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHH
T ss_pred HCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHH
Confidence 9999999999998877777777888887 599999999999999975
Q ss_pred --------------------cEEEeccCCCCcccceecC
Q 042003 230 --------------------NCVINYDFPDSGAAYIHRI 248 (248)
Q Consensus 230 --------------------~~Vi~~~~p~~~~~~~qri 248 (248)
.+||+++.|.|...|.||+
T Consensus 560 ~~~~~~~~~~~~~~V~~~GGlhVI~te~pes~riy~qr~ 598 (922)
T 1nkt_A 560 LPIVKEEASKEAKEVIEAGGLYVLGTERHESRRIDNQLR 598 (922)
T ss_dssp HHHHHHHTTHHHHHHHHTTSEEEEECSCCSSHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHhcCCcEEEeccCCCCHHHHHHHh
Confidence 4999999999999999984
No 46
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.94 E-value=1.4e-26 Score=209.92 Aligned_cols=104 Identities=23% Similarity=0.328 Sum_probs=98.2
Q ss_pred hhHHHHHHHHHhccCCCCEEEEecchHHHHHHHHHhhc-CCCeeEEEecCCCHHHHHHHHHHhhcCC--ceEEEEecccc
Q 042003 145 EGKLLALRQSFAESLNPPVLIFVQSKERAKELYGELAF-DGIRAGVIHSDLSQTQRENAVDDFRAGK--TWVLIATDVIA 221 (248)
Q Consensus 145 ~~~~~~l~~~~~~~~~~~~liF~~~~~~~~~l~~~L~~-~~~~v~~~~~~~~~~~r~~~~~~f~~g~--~~ilv~T~~~~ 221 (248)
..|...+.+++....+++++|||+++..++.+++.|.. .|+++..+||+|+..+|+.+++.|++|+ .+|||||++++
T Consensus 488 ~~K~~~L~~ll~~~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~v~~ 567 (968)
T 3dmq_A 488 DPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGS 567 (968)
T ss_dssp SHHHHHHHHHHHHTSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSCCTT
T ss_pred cHHHHHHHHHHHhCCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEecchhh
Confidence 46888899999887788999999999999999999995 5999999999999999999999999998 99999999999
Q ss_pred cCCCCCCCcEEEeccCCCCcccceecC
Q 042003 222 RGMDFKGVNCVINYDFPDSGAAYIHRI 248 (248)
Q Consensus 222 ~Gidip~~~~Vi~~~~p~~~~~~~qri 248 (248)
+|+|+|++++||++++|+|+..|.||+
T Consensus 568 ~GlDl~~~~~VI~~d~p~~~~~~~Q~~ 594 (968)
T 3dmq_A 568 EGRNFQFASHMVMFDLPFNPDLLEQRI 594 (968)
T ss_dssp CSSCCTTCCEEECSSCCSSHHHHHHHH
T ss_pred cCCCcccCcEEEEecCCCCHHHHHHHh
Confidence 999999999999999999999999984
No 47
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.94 E-value=4.6e-27 Score=202.45 Aligned_cols=207 Identities=18% Similarity=0.151 Sum_probs=141.9
Q ss_pred CcchHHHHHHHhhcCCCcEEEEcccchhhhcccccCCCcEEEeChHHHHHHHhcCCcccCceeEEEEeccccccccCccc
Q 042003 1 LATQTTRECKKLAKGNKFQIKLMKKELVRSTDLSKFSCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEVGNLL 80 (248)
Q Consensus 1 L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Tp~~l~~~~~~~~~~~~~~~~lIiDEah~~~~~~~~~ 80 (248)
||.|+++.+.+..... +....|+. ....+++|+|+||++| +....+.+++++++|+||||++. .+ +.
T Consensus 269 LA~Qia~~l~~~~g~~----vg~~vG~~----~~~~~~~IlV~TPGrL---l~~~~l~l~~l~~lVlDEAH~l~-~~-~~ 335 (666)
T 3o8b_A 269 ATLGFGAYMSKAHGID----PNIRTGVR----TITTGAPVTYSTYGKF---LADGGCSGGAYDIIICDECHSTD-ST-TI 335 (666)
T ss_dssp HHHHHHHHHHHHHSCC----CEEECSSC----EECCCCSEEEEEHHHH---HHTTSCCTTSCSEEEETTTTCCS-HH-HH
T ss_pred HHHHHHHHHHHHhCCC----eeEEECcE----eccCCCCEEEECcHHH---HhCCCcccCcccEEEEccchhcC-cc-HH
Confidence 5778887666544321 22233332 1456799999999997 45666778899999999998754 33 66
Q ss_pred ccchhHhhhCCCcc-ceeEEEEeecCchHHHHHHHhcCCcEEEEEcccccccccceeEEEEcCCchhHHHHHHHHHhccC
Q 042003 81 KHIDPVVKACSNPS-IVRSLFSATLPDFVEELARSIMHDAVRVIVGRKNTASESIKQKLVFAGSEEGKLLALRQSFAESL 159 (248)
Q Consensus 81 ~~~~~~~~~~~~~~-~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 159 (248)
..+..+++.+.... ..+++||||+++... ...+........... . ........ . +....
T Consensus 336 ~~l~~Il~~l~~~~~~llil~SAT~~~~i~------~~~p~i~~v~~~~~~--~----i~~~~~~~-~-------l~~~~ 395 (666)
T 3o8b_A 336 LGIGTVLDQAETAGARLVVLATATPPGSVT------VPHPNIEEVALSNTG--E----IPFYGKAI-P-------IEAIR 395 (666)
T ss_dssp HHHHHHHHHTTTTTCSEEEEEESSCTTCCC------CCCTTEEEEECBSCS--S----EEETTEEE-C-------GGGSS
T ss_pred HHHHHHHHhhhhcCCceEEEECCCCCcccc------cCCcceEEEeecccc--h----hHHHHhhh-h-------hhhcc
Confidence 66777777743322 236788999987321 111111111100000 0 00000000 0 12224
Q ss_pred CCCEEEEecchHHHHHHHHHhhcCCCeeEEEecCCCHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCcEEE------
Q 042003 160 NPPVLIFVQSKERAKELYGELAFDGIRAGVIHSDLSQTQRENAVDDFRAGKTWVLIATDVIARGMDFKGVNCVI------ 233 (248)
Q Consensus 160 ~~~~liF~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gidip~~~~Vi------ 233 (248)
++++||||+++++++.+++.|++.++++..+||+|++++ |.+++.+|||||+++++|||+| +++||
T Consensus 396 ~~~vLVFv~Tr~~ae~la~~L~~~g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~ 467 (666)
T 3o8b_A 396 GGRHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCV 467 (666)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHTTTCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEE
T ss_pred CCcEEEEeCCHHHHHHHHHHHHhCCCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCccc
Confidence 689999999999999999999999999999999999875 4566679999999999999997 99999
Q ss_pred ----ecc-----------CCCCcccceecC
Q 042003 234 ----NYD-----------FPDSGAAYIHRI 248 (248)
Q Consensus 234 ----~~~-----------~p~~~~~~~qri 248 (248)
||| .|.|..+|+||+
T Consensus 468 ~~ViNyDydP~~gl~~~~~P~s~~syiQRi 497 (666)
T 3o8b_A 468 TQTVDFSLDPTFTIETTTVPQDAVSRSQRR 497 (666)
T ss_dssp EEEEECCCSSSCEEEEEEEECBHHHHHHHH
T ss_pred ccccccccccccccccccCcCCHHHHHHHh
Confidence 566 899999999995
No 48
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.93 E-value=5.5e-27 Score=195.80 Aligned_cols=185 Identities=15% Similarity=0.101 Sum_probs=132.2
Q ss_pred CCcEEEeChHHHHHHHhcCCcccCceeEEEEeccccccccCcccccchhHhhhCCCccceeEEEEeecCchHHHHHHHhc
Q 042003 37 SCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPDFVEELARSIM 116 (248)
Q Consensus 37 ~~~i~v~Tp~~l~~~~~~~~~~~~~~~~lIiDEah~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~ 116 (248)
+..+.+.|.+.+.+.+.. ...+.+++++|+||+|++ +.+ +......+........+++++||||+++...++...
T Consensus 70 ~~~~~~~~~~~l~~~l~~-~~~~~~l~~vViDEaH~~-~~~-~~~~~~~l~~~~~~~~~~~l~~SAT~~~~~~~~~~~-- 144 (431)
T 2v6i_A 70 NEIVDFMCHSTFTMKLLQ-GVRVPNYNLYIMDEAHFL-DPA-SVAARGYIETRVSMGDAGAIFMTATPPGTTEAFPPS-- 144 (431)
T ss_dssp CCSEEEEEHHHHHHHHHH-TCCCCCCSEEEEESTTCC-SHH-HHHHHHHHHHHHHTTSCEEEEEESSCTTCCCSSCCC--
T ss_pred CceEEEEchHHHHHHHhc-CccccCCCEEEEeCCccC-Ccc-HHHHHHHHHHHhhCCCCcEEEEeCCCCcchhhhcCC--
Confidence 455777888888777766 556899999999999997 322 233333343332346789999999998743221110
Q ss_pred CCcEEEEEcccccccccceeEEEEcCCchhHHHHHHHHHhccCCCCEEEEecchHHHHHHHHHhhcCCCeeEEEecCCCH
Q 042003 117 HDAVRVIVGRKNTASESIKQKLVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKERAKELYGELAFDGIRAGVIHSDLSQ 196 (248)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~liF~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~ 196 (248)
..+...... .....+...+.+.+... +++++|||+++++++.+++.|++.++++..+||+
T Consensus 145 ~~~i~~~~~----------------~~~~~~~~~~~~~l~~~-~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lhg~--- 204 (431)
T 2v6i_A 145 NSPIIDEET----------------RIPDKAWNSGYEWITEF-DGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRK--- 204 (431)
T ss_dssp SSCCEEEEC----------------CCCSSCCSSCCHHHHSC-SSCEEEECSSHHHHHHHHHHHHHTTCCEEEESTT---
T ss_pred CCceeeccc----------------cCCHHHHHHHHHHHHcC-CCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCc---
Confidence 011110000 00001111122334443 5799999999999999999999999999999997
Q ss_pred HHHHHHHHHhhcCCceEEEEecccccCCCCCCCcE-----------------EEeccCCCCcccceecC
Q 042003 197 TQRENAVDDFRAGKTWVLIATDVIARGMDFKGVNC-----------------VINYDFPDSGAAYIHRI 248 (248)
Q Consensus 197 ~~r~~~~~~f~~g~~~ilv~T~~~~~Gidip~~~~-----------------Vi~~~~p~~~~~~~qri 248 (248)
+|+++++.|++|+.+|||||+++++|+|+| +.+ ||+++.|.+..+|+||+
T Consensus 205 -~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~ 271 (431)
T 2v6i_A 205 -TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRR 271 (431)
T ss_dssp -THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHH
T ss_pred -cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCccccceecccceeecccccCCHHHHHHhh
Confidence 578899999999999999999999999999 544 67888999999999984
No 49
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.93 E-value=3e-25 Score=189.12 Aligned_cols=234 Identities=17% Similarity=0.193 Sum_probs=154.6
Q ss_pred CcchHHHHHHHhhcCCCcEEEEcccchhhhcccccCCCcEEEeChHHHHHHHhcCCcccCceeEEEEeccccccccCccc
Q 042003 1 LATQTTRECKKLAKGNKFQIKLMKKELVRSTDLSKFSCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEVGNLL 80 (248)
Q Consensus 1 L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Tp~~l~~~~~~~~~~~~~~~~lIiDEah~~~~~~~~~ 80 (248)
|+.|+.+.++++.+... +..+.|+.. ......++|+|+||+++.+... +....++++|+||||++.+.+
T Consensus 97 l~~qw~~e~~~~~~~~~---v~~~~g~~~--~~~~~~~~ivi~t~~~l~~~~~---l~~~~~~~vIvDEaH~~kn~~--- 165 (500)
T 1z63_A 97 VLKNWEEELSKFAPHLR---FAVFHEDRS--KIKLEDYDIILTTYAVLLRDTR---LKEVEWKYIVIDEAQNIKNPQ--- 165 (500)
T ss_dssp THHHHHHHHHHHCTTSC---EEECSSSTT--SCCGGGSSEEEEEHHHHTTCHH---HHTCCEEEEEEETGGGGSCTT---
T ss_pred HHHHHHHHHHHHCCCce---EEEEecCch--hccccCCcEEEeeHHHHhccch---hcCCCcCEEEEeCccccCCHh---
Confidence 56899999999987654 444445432 2334568999999998865543 334578999999999987654
Q ss_pred ccchhHhhhCCCccceeEEEEeecCch-HHH---HHH---------------------------------HhcCCcEEEE
Q 042003 81 KHIDPVVKACSNPSIVRSLFSATLPDF-VEE---LAR---------------------------------SIMHDAVRVI 123 (248)
Q Consensus 81 ~~~~~~~~~~~~~~~~~i~~SAT~~~~-~~~---~~~---------------------------------~~~~~~~~~~ 123 (248)
......+..+ .....+++|||+... ..+ +.. .++ .+..+.
T Consensus 166 ~~~~~~l~~l--~~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l-~~~~lr 242 (500)
T 1z63_A 166 TKIFKAVKEL--KSKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAII-SPFILR 242 (500)
T ss_dssp SHHHHHHHTS--CEEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHH-TTTEEC
T ss_pred HHHHHHHHhh--ccCcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHH-hhHeee
Confidence 2223333332 235679999998431 111 111 111 111111
Q ss_pred Ecccc----cccccceeEEEEcCC--------------------------------------------------------
Q 042003 124 VGRKN----TASESIKQKLVFAGS-------------------------------------------------------- 143 (248)
Q Consensus 124 ~~~~~----~~~~~~~~~~~~~~~-------------------------------------------------------- 143 (248)
....+ ...+.......++.-
T Consensus 243 r~k~~~~~~~~lp~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~ 322 (500)
T 1z63_A 243 RTKYDKAIINDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVR 322 (500)
T ss_dssp CCTTCHHHHTTSCSEEEEEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCST
T ss_pred ecccccchhhcCCCCeEEEEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhh
Confidence 11100 011111111122211
Q ss_pred chhHHHHHHHHHhcc--CCCCEEEEecchHHHHHHHHHhhcC-CCeeEEEecCCCHHHHHHHHHHhhcC-Cce-EEEEec
Q 042003 144 EEGKLLALRQSFAES--LNPPVLIFVQSKERAKELYGELAFD-GIRAGVIHSDLSQTQRENAVDDFRAG-KTW-VLIATD 218 (248)
Q Consensus 144 ~~~~~~~l~~~~~~~--~~~~~liF~~~~~~~~~l~~~L~~~-~~~v~~~~~~~~~~~r~~~~~~f~~g-~~~-ilv~T~ 218 (248)
...|...+.+++... .+.+++|||++...++.+++.|... +.++..+||+++.++|+++++.|++| ..+ +|++|+
T Consensus 323 ~s~K~~~l~~~l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~ 402 (500)
T 1z63_A 323 RSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVK 402 (500)
T ss_dssp TCHHHHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECC
T ss_pred cchhHHHHHHHHHHHHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecc
Confidence 123455555555543 3679999999999999999999885 89999999999999999999999998 454 789999
Q ss_pred ccccCCCCCCCcEEEeccCCCCcccceecC
Q 042003 219 VIARGMDFKGVNCVINYDFPDSGAAYIHRI 248 (248)
Q Consensus 219 ~~~~Gidip~~~~Vi~~~~p~~~~~~~qri 248 (248)
++++|+|+|.+++||++|+|||+..|.||+
T Consensus 403 ~~~~Glnl~~~~~vi~~d~~~~~~~~~Q~~ 432 (500)
T 1z63_A 403 AGGFGINLTSANRVIHFDRWWNPAVEDQAT 432 (500)
T ss_dssp CC-CCCCCTTCSEEEESSCCSCC---CHHH
T ss_pred cccCCCchhhCCEEEEeCCCCCcchHHHHH
Confidence 999999999999999999999999999984
No 50
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.93 E-value=6.7e-27 Score=202.41 Aligned_cols=187 Identities=12% Similarity=0.077 Sum_probs=138.0
Q ss_pred cCCCcEEEeChHHHHHHHhcCCcccCceeEEEEeccccccccCcccccchhHhhhCCCccceeEEEEeecCchHHHHHHH
Q 042003 35 KFSCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPDFVEELARS 114 (248)
Q Consensus 35 ~~~~~i~v~Tp~~l~~~~~~~~~~~~~~~~lIiDEah~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~ 114 (248)
..+..+.++|.+.+.+.+... ..+++++++|+||||++ +.+ +...+..+...+.....|+++||||++.....+..
T Consensus 252 tp~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~~-~~~~~~~i~~~l~~~~~q~il~SAT~~~~~~~~~~- 327 (618)
T 2whx_A 252 TGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DPC-SVAARGYISTRVEMGEAAAIFMTATPPGSTDPFPQ- 327 (618)
T ss_dssp CSSSCEEEEEHHHHHHHHHHC-SSCCCCSEEEEESTTCC-SHH-HHHHHHHHHHHHHHTSCEEEEECSSCTTCCCSSCC-
T ss_pred CCCceEEEEChHHHHHHHhcc-ccccCCeEEEEECCCCC-Ccc-HHHHHHHHHHHhcccCccEEEEECCCchhhhhhhc-
Confidence 345567788888887766654 34789999999999997 333 55566666666444678999999999875432221
Q ss_pred hcCCcEEEEEcccccccccceeEEEEcCCchhHHHHHHHHHhccCCCCEEEEecchHHHHHHHHHhhcCCCeeEEEecCC
Q 042003 115 IMHDAVRVIVGRKNTASESIKQKLVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKERAKELYGELAFDGIRAGVIHSDL 194 (248)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~liF~~~~~~~~~l~~~L~~~~~~v~~~~~~~ 194 (248)
.++..+...... +. .+...+...+.+. ++++||||++++.++.+++.|++.++++..+||+
T Consensus 328 --~~~~~~~v~~~~-~~--------------~~~~~ll~~l~~~-~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~- 388 (618)
T 2whx_A 328 --SNSPIEDIEREI-PE--------------RSWNTGFDWITDY-QGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK- 388 (618)
T ss_dssp --CSSCEEEEECCC-CS--------------SCCSSSCHHHHHC-CSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT-
T ss_pred --cCCceeeecccC-CH--------------HHHHHHHHHHHhC-CCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH-
Confidence 122222221110 00 0001112222233 6799999999999999999999999999999984
Q ss_pred CHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCcEE--------------------EeccCCCCcccceecC
Q 042003 195 SQTQRENAVDDFRAGKTWVLIATDVIARGMDFKGVNCV--------------------INYDFPDSGAAYIHRI 248 (248)
Q Consensus 195 ~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gidip~~~~V--------------------i~~~~p~~~~~~~qri 248 (248)
+|.++++.|++|+.+|||||+++++|+|+| +++| |+++.|.|..+|+||+
T Consensus 389 ---~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~ 458 (618)
T 2whx_A 389 ---TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRR 458 (618)
T ss_dssp ---THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHH
T ss_pred ---HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECcceecceecccCCCceEEcccccCCHHHHHHhc
Confidence 788899999999999999999999999998 9988 7777799999999985
No 51
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.93 E-value=8.9e-25 Score=159.39 Aligned_cols=117 Identities=38% Similarity=0.585 Sum_probs=109.3
Q ss_pred ccceeEEEEcCCchhHHHHHHHHHhccCCCCEEEEecchHHHHHHHHHhhcCCCeeEEEecCCCHHHHHHHHHHhhcCCc
Q 042003 132 ESIKQKLVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKERAKELYGELAFDGIRAGVIHSDLSQTQRENAVDDFRAGKT 211 (248)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~liF~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~ 211 (248)
.++.+++..+...+.|...+.++++...++++||||++++.++.+++.|+..++.+..+||+|++.+|..+++.|++|+.
T Consensus 2 ~~i~~~~~~~~~~~~K~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~ 81 (165)
T 1fuk_A 2 EGIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSS 81 (165)
T ss_dssp --CEEEEEEEESGGGHHHHHHHHHHHTTCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSC
T ss_pred CCcEEEEEECCcchhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCC
Confidence 35677888777776799999999998878899999999999999999999999999999999999999999999999999
Q ss_pred eEEEEecccccCCCCCCCcEEEeccCCCCcccceecC
Q 042003 212 WVLIATDVIARGMDFKGVNCVINYDFPDSGAAYIHRI 248 (248)
Q Consensus 212 ~ilv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~qri 248 (248)
+|||||+++++|+|+|++++||++|+|+|+..|+||+
T Consensus 82 ~vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~ 118 (165)
T 1fuk_A 82 RILISTDLLARGIDVQQVSLVINYDLPANKENYIHRI 118 (165)
T ss_dssp SEEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSS
T ss_pred EEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHh
Confidence 9999999999999999999999999999999999996
No 52
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.93 E-value=1.3e-25 Score=167.24 Aligned_cols=134 Identities=33% Similarity=0.562 Sum_probs=108.0
Q ss_pred HHhcCCcEEEEEcccccccccceeEEEEcCCchhHHHHHHHHHhccCCCCEEEEecchHHHHHHHHHhhcCCCeeEEEec
Q 042003 113 RSIMHDAVRVIVGRKNTASESIKQKLVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKERAKELYGELAFDGIRAGVIHS 192 (248)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~liF~~~~~~~~~l~~~L~~~~~~v~~~~~ 192 (248)
..++.+|..+.++.......++.+.+..+.. +.|...|.+++... ++++||||+++..++.+++.|+..++++..+||
T Consensus 9 ~~~~~~p~~i~v~~~~~~~~~i~q~~~~~~~-~~K~~~L~~~l~~~-~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg 86 (191)
T 2p6n_A 9 SGVDLGTENLYFQSMGAASLDVIQEVEYVKE-EAKMVYLLECLQKT-PPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHG 86 (191)
T ss_dssp -------------------CCSEEEEEECCG-GGHHHHHHHHHTTS-CSCEEEECSCHHHHHHHHHHHHHHTCCEEEECT
T ss_pred ccccCCCEEEEECCCCCCCcCceEEEEEcCh-HHHHHHHHHHHHhC-CCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeC
Confidence 3467788888877777777888888877664 56999999999876 579999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCcEEEeccCCCCcccceecC
Q 042003 193 DLSQTQRENAVDDFRAGKTWVLIATDVIARGMDFKGVNCVINYDFPDSGAAYIHRI 248 (248)
Q Consensus 193 ~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~qri 248 (248)
+|++.+|+++++.|++|+.+|||||+++++|+|+|++++||+||+|+|+..|+||+
T Consensus 87 ~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~ 142 (191)
T 2p6n_A 87 GKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRI 142 (191)
T ss_dssp TSCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999985
No 53
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.93 E-value=3.6e-28 Score=203.39 Aligned_cols=181 Identities=16% Similarity=0.148 Sum_probs=118.3
Q ss_pred EeChHHHHHHHhc--------CCcccCceeEEEEeccccccccCcccccchhHhhhCCCccceeEEEEeecCchHHHHHH
Q 042003 42 ISTPLRLRLAIRR--------KKIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPDFVEELAR 113 (248)
Q Consensus 42 v~Tp~~l~~~~~~--------~~~~~~~~~~lIiDEah~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~ 113 (248)
++||+++...+.. ....+++++++|+||||++ +.+ +...+..+.........|+++||||+++....+..
T Consensus 72 v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~-~~~-~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~ 149 (440)
T 1yks_A 72 HGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFL-DPA-SIAARGWAAHRARANESATILMTATPPGTSDEFPH 149 (440)
T ss_dssp CCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCC-SHH-HHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSSCC
T ss_pred ccCCccceeeecccchhHhhhCcccccCccEEEEECcccc-Ccc-hHHHHHHHHHHhccCCceEEEEeCCCCchhhhhhh
Confidence 6777555433322 2234789999999999998 322 33333333333234578999999999875443222
Q ss_pred HhcCCcEEEEEcccccccccceeEEEEcCCchhHHHHHHHHHhccCCCCEEEEecchHHHHHHHHHhhcCCCeeEEEecC
Q 042003 114 SIMHDAVRVIVGRKNTASESIKQKLVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKERAKELYGELAFDGIRAGVIHSD 193 (248)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~liF~~~~~~~~~l~~~L~~~~~~v~~~~~~ 193 (248)
. ..+....... .+ ........ ..+.+. +++++|||++++.++.+++.|++.++++..+||
T Consensus 150 ~--~~~~~~~~~~--~~----------~~~~~~~~----~~l~~~-~~~~lVF~~s~~~a~~l~~~L~~~~~~v~~lhg- 209 (440)
T 1yks_A 150 S--NGEIEDVQTD--IP----------SEPWNTGH----DWILAD-KRPTAWFLPSIRAANVMAASLRKAGKSVVVLNR- 209 (440)
T ss_dssp C--SSCEEEEECC--CC----------SSCCSSSC----HHHHHC-CSCEEEECSCHHHHHHHHHHHHHTTCCEEECCS-
T ss_pred c--CCCeeEeeec--cC----------hHHHHHHH----HHHHhc-CCCEEEEeCCHHHHHHHHHHHHHcCCCEEEecc-
Confidence 1 1111111000 00 00111111 222222 689999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCcEEEe-------------------ccCCCCcccceecC
Q 042003 194 LSQTQRENAVDDFRAGKTWVLIATDVIARGMDFKGVNCVIN-------------------YDFPDSGAAYIHRI 248 (248)
Q Consensus 194 ~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gidip~~~~Vi~-------------------~~~p~~~~~~~qri 248 (248)
++|.++++.|++|+.+|||||+++++|+|+| +++||+ ++.|.+..+|+||+
T Consensus 210 ---~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~ 279 (440)
T 1yks_A 210 ---KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRR 279 (440)
T ss_dssp ---SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHH
T ss_pred ---hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccceeeccccccCHHHHHHhc
Confidence 4688999999999999999999999999999 999996 88999999999984
No 54
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.92 E-value=2.6e-25 Score=193.35 Aligned_cols=216 Identities=17% Similarity=0.123 Sum_probs=155.8
Q ss_pred CcchHHHHHHHhhcCCCcEEEEcccchhhhcccc-cCCCcEEEeChHHHHHHHhcCCcccCceeEEEEeccccccccCcc
Q 042003 1 LATQTTRECKKLAKGNKFQIKLMKKELVRSTDLS-KFSCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEVGNL 79 (248)
Q Consensus 1 L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~v~Tp~~l~~~~~~~~~~~~~~~~lIiDEah~~~~~~~~ 79 (248)
||.|+++.+++. + ..+....|+....... ....+++++|++.+. ....++++|+||||++.+.+ +
T Consensus 191 LA~Qi~~~l~~~----g-~~v~lltG~~~~iv~TpGr~~~il~~T~e~~~--------l~~~v~lvVIDEaH~l~d~~-~ 256 (677)
T 3rc3_A 191 LAHEIFEKSNAA----G-VPCDLVTGEERVTVQPNGKQASHVSCTVEMCS--------VTTPYEVAVIDEIQMIRDPA-R 256 (677)
T ss_dssp HHHHHHHHHHHT----T-CCEEEECSSCEECCSTTCCCCSEEEEEGGGCC--------SSSCEEEEEECSGGGGGCTT-T
T ss_pred HHHHHHHHHHhc----C-CcEEEEECCeeEEecCCCcccceeEecHhHhh--------hcccCCEEEEecceecCCcc-c
Confidence 688999998876 3 3355555654221111 123788888886542 24778999999999998776 7
Q ss_pred cccchhHhhhCCCccceeEEEEeecCchHHHHHHHhcCCcEEEEEcccccccccceeEEEEcCCchhHHHHHHHHHhccC
Q 042003 80 LKHIDPVVKACSNPSIVRSLFSATLPDFVEELARSIMHDAVRVIVGRKNTASESIKQKLVFAGSEEGKLLALRQSFAESL 159 (248)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 159 (248)
...+..++..+.....+++++|||.+. ...+.... +....+.......+.. . .... + ..+...
T Consensus 257 g~~~~~~l~~l~~~~i~il~~SAT~~~-i~~l~~~~-~~~~~v~~~~r~~~l~-----~--~~~~------l-~~l~~~- 319 (677)
T 3rc3_A 257 GWAWTRALLGLCAEEVHLCGEPAAIDL-VMELMYTT-GEEVEVRDYKRLTPIS-----V--LDHA------L-ESLDNL- 319 (677)
T ss_dssp HHHHHHHHHHCCEEEEEEEECGGGHHH-HHHHHHHH-TCCEEEEECCCSSCEE-----E--CSSC------C-CSGGGC-
T ss_pred hHHHHHHHHccCccceEEEeccchHHH-HHHHHHhc-CCceEEEEeeecchHH-----H--HHHH------H-HHHHhc-
Confidence 777777777755578899999999543 44444333 3444432221111100 0 0000 0 011122
Q ss_pred CCCEEEEecchHHHHHHHHHhhcCCCeeEEEecCCCHHHHHHHHHHhhc--CCceEEEEecccccCCCCCCCcEEEeccC
Q 042003 160 NPPVLIFVQSKERAKELYGELAFDGIRAGVIHSDLSQTQRENAVDDFRA--GKTWVLIATDVIARGMDFKGVNCVINYDF 237 (248)
Q Consensus 160 ~~~~liF~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~r~~~~~~f~~--g~~~ilv~T~~~~~Gidip~~~~Vi~~~~ 237 (248)
.+..+|||+++++++.+++.|++.++.+..+||+|++++|.++++.|++ |+.+|||||+++++|+|+ ++++||++|.
T Consensus 320 ~~g~iIf~~s~~~ie~la~~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~ 398 (677)
T 3rc3_A 320 RPGDCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSL 398 (677)
T ss_dssp CTTEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCS
T ss_pred CCCCEEEEcCHHHHHHHHHHHHhcCCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCc
Confidence 3566899999999999999999999999999999999999999999999 889999999999999999 8999999999
Q ss_pred --------------CCCcccceecC
Q 042003 238 --------------PDSGAAYIHRI 248 (248)
Q Consensus 238 --------------p~~~~~~~qri 248 (248)
|.|..+|+||+
T Consensus 399 ~k~~~~~~G~~~~~p~s~~~~~QR~ 423 (677)
T 3rc3_A 399 IKPSINEKGERELEPITTSQALQIA 423 (677)
T ss_dssp BC-----------CBCCHHHHHHHH
T ss_pred cccccccCCccccccCCHHHHHHHh
Confidence 77899999984
No 55
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.92 E-value=6.5e-25 Score=159.76 Aligned_cols=119 Identities=31% Similarity=0.525 Sum_probs=109.5
Q ss_pred cccccceeEEEEcCCchhHHHHHHHHHhccCCCCEEEEecchHHHHHHHHHhhcCCCeeEEEecCCCHHHHHHHHHHhhc
Q 042003 129 TASESIKQKLVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKERAKELYGELAFDGIRAGVIHSDLSQTQRENAVDDFRA 208 (248)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~liF~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~r~~~~~~f~~ 208 (248)
....++.+.+..+. .+.|...|.+++....++++||||++++.++.+++.|...++++..+||+|++.+|..+++.|++
T Consensus 5 ~~~~~i~~~~~~~~-~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~ 83 (163)
T 2hjv_A 5 LTTRNIEHAVIQVR-EENKFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKR 83 (163)
T ss_dssp -CCCCEEEEEEECC-GGGHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHT
T ss_pred cCcccceEEEEECC-hHHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHc
Confidence 34456777777665 45699999999988878899999999999999999999999999999999999999999999999
Q ss_pred CCceEEEEecccccCCCCCCCcEEEeccCCCCcccceecC
Q 042003 209 GKTWVLIATDVIARGMDFKGVNCVINYDFPDSGAAYIHRI 248 (248)
Q Consensus 209 g~~~ilv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~qri 248 (248)
|+.+|||||+++++|+|+|++++||++|+|+|+..|+||+
T Consensus 84 g~~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~ 123 (163)
T 2hjv_A 84 GEYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRT 123 (163)
T ss_dssp TSCSEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHT
T ss_pred CCCeEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhc
Confidence 9999999999999999999999999999999999999986
No 56
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.92 E-value=5.9e-25 Score=161.90 Aligned_cols=119 Identities=34% Similarity=0.531 Sum_probs=112.6
Q ss_pred ccccceeEEEEcCCchhHHHHHHHHHhccCCCCEEEEecchHHHHHHHHHhhcCCCeeEEEecCCCHHHHHHHHHHhhcC
Q 042003 130 ASESIKQKLVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKERAKELYGELAFDGIRAGVIHSDLSQTQRENAVDDFRAG 209 (248)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~liF~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~r~~~~~~f~~g 209 (248)
...++.+.+..+...+.|...+.++++...++++||||++++.++.+++.|...++++..+||+|++.+|..+++.|++|
T Consensus 4 ~~~~i~q~~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g 83 (175)
T 2rb4_A 4 TLNNIRQYYVLCEHRKDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDG 83 (175)
T ss_dssp CBCCEEEEEEECSSHHHHHHHHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTT
T ss_pred ccCCceEEEEEcCChHhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcC
Confidence 45678899988888888999999999988788999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEecccccCCCCCCCcEEEeccCC------CCcccceecC
Q 042003 210 KTWVLIATDVIARGMDFKGVNCVINYDFP------DSGAAYIHRI 248 (248)
Q Consensus 210 ~~~ilv~T~~~~~Gidip~~~~Vi~~~~p------~~~~~~~qri 248 (248)
+.+|||||+++++|+|+|++++||+||+| .+..+|+||+
T Consensus 84 ~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~ 128 (175)
T 2rb4_A 84 KEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRI 128 (175)
T ss_dssp SCSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHH
T ss_pred CCeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHh
Confidence 99999999999999999999999999999 8889999984
No 57
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.92 E-value=6.1e-25 Score=161.18 Aligned_cols=117 Identities=29% Similarity=0.403 Sum_probs=107.9
Q ss_pred cccceeEEEEcCCchhHHHHHHHHHhccCCCCEEEEecchHHHHHHHHHhhcCCCeeEEEecCCCHHHHHHHHHHhhcCC
Q 042003 131 SESIKQKLVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKERAKELYGELAFDGIRAGVIHSDLSQTQRENAVDDFRAGK 210 (248)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~liF~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~ 210 (248)
..++.+++..+.. +.|...+.++++...++++||||++++.++.+++.|...++++..+||+|++.+|..+++.|++|+
T Consensus 3 ~~~i~q~~~~~~~-~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~ 81 (172)
T 1t5i_A 3 LHGLQQYYVKLKD-NEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQ 81 (172)
T ss_dssp --CCEEEEEECCG-GGHHHHHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTS
T ss_pred cCCeEEEEEECCh-HHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCC
Confidence 3457777776654 569999999999887889999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEecccccCCCCCCCcEEEeccCCCCcccceecC
Q 042003 211 TWVLIATDVIARGMDFKGVNCVINYDFPDSGAAYIHRI 248 (248)
Q Consensus 211 ~~ilv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~qri 248 (248)
.+|||||+++++|+|+|++++||+||+|+|+..|+||+
T Consensus 82 ~~vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~ 119 (172)
T 1t5i_A 82 RRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRV 119 (172)
T ss_dssp CSEEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHH
T ss_pred CcEEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHh
Confidence 99999999999999999999999999999999999984
No 58
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.92 E-value=1e-25 Score=196.30 Aligned_cols=181 Identities=14% Similarity=0.132 Sum_probs=125.0
Q ss_pred EEeChHHHHHHHhcCCcccCceeEEEEeccccccccCcccccchhHhhhCCCccceeEEEEeecCchHHHHHHHhcCCcE
Q 042003 41 LISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPDFVEELARSIMHDAV 120 (248)
Q Consensus 41 ~v~Tp~~l~~~~~~~~~~~~~~~~lIiDEah~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~ 120 (248)
-+.+.+.+.+.+... ..+++++++|+||||++.. . +...+..+.........|+++||||+++....+... ..+.
T Consensus 313 ~~l~~~~l~~~l~~~-~~l~~l~lvViDEaH~~~~-~-~~~~~~~l~~~~~~~~~~vl~~SAT~~~~i~~~~~~--~~~i 387 (673)
T 2wv9_A 313 DVMCHATLTHRLMSP-LRVPNYNLFVMDEAHFTDP-A-SIAARGYIATRVEAGEAAAIFMTATPPGTSDPFPDT--NSPV 387 (673)
T ss_dssp EEEEHHHHHHHHHSS-SCCCCCSEEEEESTTCCCH-H-HHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSSCCC--SSCE
T ss_pred HHHHhhhhHHHHhcc-cccccceEEEEeCCcccCc-c-HHHHHHHHHHhccccCCcEEEEcCCCChhhhhhccc--CCce
Confidence 334444554444443 4679999999999999721 1 122233333332235789999999998753322110 1111
Q ss_pred EEEEcccccccccceeEEEEcCCchhHHHHHHHHHhccCCCCEEEEecchHHHHHHHHHhhcCCCeeEEEecCCCHHHHH
Q 042003 121 RVIVGRKNTASESIKQKLVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKERAKELYGELAFDGIRAGVIHSDLSQTQRE 200 (248)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~liF~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~r~ 200 (248)
...... ... . ....+...+.+ .++++||||+++++++.+++.|++.++++..+||+ +|+
T Consensus 388 ~~v~~~--------------~~~-~-~~~~~l~~l~~-~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~ 446 (673)
T 2wv9_A 388 HDVSSE--------------IPD-R-AWSSGFEWITD-YAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYD 446 (673)
T ss_dssp EEEECC--------------CCS-S-CCSSCCHHHHS-CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHH
T ss_pred EEEeee--------------cCH-H-HHHHHHHHHHh-CCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHH
Confidence 111000 000 0 00111122223 36899999999999999999999999999999994 789
Q ss_pred HHHHHhhcCCceEEEEecccccCCCCCCCcEEEe--------------------ccCCCCcccceecC
Q 042003 201 NAVDDFRAGKTWVLIATDVIARGMDFKGVNCVIN--------------------YDFPDSGAAYIHRI 248 (248)
Q Consensus 201 ~~~~~f~~g~~~ilv~T~~~~~Gidip~~~~Vi~--------------------~~~p~~~~~~~qri 248 (248)
++++.|++|+.+|||||+++++|+|+| +++||+ |++|.|..+|+||+
T Consensus 447 ~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~VI~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~ 513 (673)
T 2wv9_A 447 TEYPKCKNGDWDFVITTDISEMGANFG-ASRVIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRR 513 (673)
T ss_dssp HHGGGGGTCCCSEEEECGGGGTTCCCC-CSEEEECCEECCEEEECSTTCEEEECCSEECCHHHHHHHH
T ss_pred HHHHHHHCCCceEEEECchhhcceeeC-CcEEEECCCcccceeeecccccceecccCCCCHHHHHHHh
Confidence 999999999999999999999999999 999998 56899999999984
No 59
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.91 E-value=1.6e-25 Score=188.41 Aligned_cols=185 Identities=15% Similarity=0.122 Sum_probs=127.2
Q ss_pred CCcEEEeChHHHHHHHhcCCcccCceeEEEEeccccccccCcccccchhHhhhCCCccceeEEEEeecCchHHHHHHHhc
Q 042003 37 SCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPDFVEELARSIM 116 (248)
Q Consensus 37 ~~~i~v~Tp~~l~~~~~~~~~~~~~~~~lIiDEah~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~ 116 (248)
+..+.++|.+.+.+.+... ..+++++++|+||||..... +...+..+.........|+++||||+++....+...
T Consensus 89 ~~~i~~~~~~~l~~~l~~~-~~l~~~~~iViDEaH~~~~~--~~~~~~~~~~~~~~~~~~~il~SAT~~~~~~~~~~~-- 163 (459)
T 2z83_A 89 NEIVDVMCHATLTHRLMSP-NRVPNYNLFVMDEAHFTDPA--SIAARGYIATKVELGEAAAIFMTATPPGTTDPFPDS-- 163 (459)
T ss_dssp CCSEEEEEHHHHHHHHHSC-C-CCCCSEEEESSTTCCSHH--HHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSSCCC--
T ss_pred CcEEEEEchHHHHHHhhcc-ccccCCcEEEEECCccCCch--hhHHHHHHHHHhccCCccEEEEEcCCCcchhhhccC--
Confidence 3457788888887777654 45789999999999984211 111111122221235789999999998754322111
Q ss_pred CCcEEEEEcccccccccceeEEEEcCCchhHHHHHHHHHhccCCCCEEEEecchHHHHHHHHHhhcCCCeeEEEecCCCH
Q 042003 117 HDAVRVIVGRKNTASESIKQKLVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKERAKELYGELAFDGIRAGVIHSDLSQ 196 (248)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~liF~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~ 196 (248)
..+...... ..+.. ..... ...+... ++++||||++++.++.+++.|+..++.+..+||.
T Consensus 164 ~~pi~~~~~--~~~~~----------~~~~~----~~~l~~~-~~~~LVF~~s~~~~~~l~~~L~~~g~~v~~lh~~--- 223 (459)
T 2z83_A 164 NAPIHDLQD--EIPDR----------AWSSG----YEWITEY-AGKTVWFVASVKMGNEIAMCLQRAGKKVIQLNRK--- 223 (459)
T ss_dssp SSCEEEEEC--CCCSS----------CCSSC----CHHHHHC-CSCEEEECSCHHHHHHHHHHHHHTTCCEEEESTT---
T ss_pred CCCeEEecc--cCCcc----------hhHHH----HHHHHhc-CCCEEEEeCChHHHHHHHHHHHhcCCcEEecCHH---
Confidence 122222111 00000 00111 1223333 6899999999999999999999999999999995
Q ss_pred HHHHHHHHHhhcCCceEEEEecccccCCCCCCCcEEEe--------------------ccCCCCcccceecC
Q 042003 197 TQRENAVDDFRAGKTWVLIATDVIARGMDFKGVNCVIN--------------------YDFPDSGAAYIHRI 248 (248)
Q Consensus 197 ~~r~~~~~~f~~g~~~ilv~T~~~~~Gidip~~~~Vi~--------------------~~~p~~~~~~~qri 248 (248)
+|+.+++.|++|+.+|||||+++++|+|+|+ ++||+ |+.|.|..+|+||+
T Consensus 224 -~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~ 293 (459)
T 2z83_A 224 -SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSPITSASAAQRR 293 (459)
T ss_dssp -CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEECCHHHHHHHH
T ss_pred -HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCcccccccccccccccccccCCCCCHHHHHHhc
Confidence 6788999999999999999999999999999 99999 66999999999984
No 60
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.90 E-value=4e-24 Score=158.59 Aligned_cols=120 Identities=38% Similarity=0.576 Sum_probs=95.1
Q ss_pred ccccccceeEEEEcCCchhHHHHHHHHHhcc-CCCCEEEEecchHHHHHHHHHhhcCCCeeEEEecCCCHHHHHHHHHHh
Q 042003 128 NTASESIKQKLVFAGSEEGKLLALRQSFAES-LNPPVLIFVQSKERAKELYGELAFDGIRAGVIHSDLSQTQRENAVDDF 206 (248)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~liF~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~r~~~~~~f 206 (248)
.....++.+.+..++. +.|...|.++++.. .++++||||++++.++.+++.|+..++++..+||+|++.+|..+++.|
T Consensus 14 ~~~~~~i~q~~~~v~~-~~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f 92 (185)
T 2jgn_A 14 GSTSENITQKVVWVEE-SDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQF 92 (185)
T ss_dssp --CCTTEEEEEEECCG-GGHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHH
T ss_pred CCCCCCceEEEEEeCc-HHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHH
Confidence 3445678888877764 56899999998876 467999999999999999999999999999999999999999999999
Q ss_pred hcCCceEEEEecccccCCCCCCCcEEEeccCCCCcccceecC
Q 042003 207 RAGKTWVLIATDVIARGMDFKGVNCVINYDFPDSGAAYIHRI 248 (248)
Q Consensus 207 ~~g~~~ilv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~qri 248 (248)
++|+.+|||||+++++|+|+|++++||++|+|+|+.+|+||+
T Consensus 93 ~~g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~ 134 (185)
T 2jgn_A 93 RSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRI 134 (185)
T ss_dssp HHTSSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHH
T ss_pred HcCCCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHc
Confidence 999999999999999999999999999999999999999984
No 61
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.90 E-value=9e-23 Score=182.28 Aligned_cols=103 Identities=22% Similarity=0.286 Sum_probs=92.0
Q ss_pred hHHHHHHHHHhcc--CCCCEEEEecchHHHHHHHHHhhcCCCeeEEEecCCCHHHHHHHHHHhhcCCc---eEEEEeccc
Q 042003 146 GKLLALRQSFAES--LNPPVLIFVQSKERAKELYGELAFDGIRAGVIHSDLSQTQRENAVDDFRAGKT---WVLIATDVI 220 (248)
Q Consensus 146 ~~~~~l~~~~~~~--~~~~~liF~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~---~ilv~T~~~ 220 (248)
.|+..+..++... .+.|+|||+.....+..+.+.|...++++..+||+++..+|+++++.|+++.. .+|++|.++
T Consensus 556 ~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~ag 635 (800)
T 3mwy_W 556 GKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAG 635 (800)
T ss_dssp HHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHH
T ss_pred hHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEecccc
Confidence 3555666666543 36799999999999999999999999999999999999999999999998654 499999999
Q ss_pred ccCCCCCCCcEEEeccCCCCcccceecC
Q 042003 221 ARGMDFKGVNCVINYDFPDSGAAYIHRI 248 (248)
Q Consensus 221 ~~Gidip~~~~Vi~~~~p~~~~~~~qri 248 (248)
++|+|+|.+++||+||+|||+..+.||+
T Consensus 636 g~GlNL~~a~~VI~~D~~wnp~~~~Qa~ 663 (800)
T 3mwy_W 636 GLGINLMTADTVVIFDSDWNPQADLQAM 663 (800)
T ss_dssp TTTCCCTTCCEEEESSCCSCSHHHHHHH
T ss_pred cCCCCccccceEEEecCCCChhhHHHHH
Confidence 9999999999999999999999999974
No 62
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.89 E-value=2.3e-23 Score=157.87 Aligned_cols=107 Identities=36% Similarity=0.553 Sum_probs=101.8
Q ss_pred CCchhHHHHHHHHHhccCCCCEEEEecchHHHHHHHHHhhcCCCeeEEEecCCCHHHHHHHHHHhhcCCceEEEEecccc
Q 042003 142 GSEEGKLLALRQSFAESLNPPVLIFVQSKERAKELYGELAFDGIRAGVIHSDLSQTQRENAVDDFRAGKTWVLIATDVIA 221 (248)
Q Consensus 142 ~~~~~~~~~l~~~~~~~~~~~~liF~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~ 221 (248)
...+.|...+.+++....++++||||++++.++.+++.|...++.+..+||+|++++|+.+++.|++|+.+|||||++++
T Consensus 13 ~~~~~k~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~~~~ 92 (212)
T 3eaq_A 13 APVRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVLVATDVAA 92 (212)
T ss_dssp CCTTSHHHHHHHHHHHHCCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECTTTT
T ss_pred CCHHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecChhh
Confidence 34457999999999988789999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCcEEEeccCCCCcccceecC
Q 042003 222 RGMDFKGVNCVINYDFPDSGAAYIHRI 248 (248)
Q Consensus 222 ~Gidip~~~~Vi~~~~p~~~~~~~qri 248 (248)
+|+|+|++++||++|+|+|+..|+||+
T Consensus 93 ~Gidi~~v~~Vi~~~~p~~~~~~~qr~ 119 (212)
T 3eaq_A 93 RGLDIPQVDLVVHYRLPDRAEAYQHRS 119 (212)
T ss_dssp CSSSCCCBSEEEESSCCSSHHHHHHHH
T ss_pred cCCCCccCcEEEECCCCcCHHHHHHHh
Confidence 999999999999999999999999984
No 63
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.81 E-value=7.4e-25 Score=160.56 Aligned_cols=116 Identities=34% Similarity=0.514 Sum_probs=107.3
Q ss_pred cceeEEEEcCCchhHHHHHHHHHhccCCCCEEEEecchHHHHHHHHHhhcCCCeeEEEecCCCHHHHHHHHHHhhcCCce
Q 042003 133 SIKQKLVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKERAKELYGELAFDGIRAGVIHSDLSQTQRENAVDDFRAGKTW 212 (248)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~liF~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~ 212 (248)
++.+.+..++..+.|...+.++++...++++||||++++.++.+++.|+..++.+..+||+|++.+|..+++.|++|+.+
T Consensus 3 ~i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~ 82 (170)
T 2yjt_D 3 KIHQWYYRADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 82 (170)
Confidence 45566666666577899999999887778999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecccccCCCCCCCcEEEeccCCCCcccceecC
Q 042003 213 VLIATDVIARGMDFKGVNCVINYDFPDSGAAYIHRI 248 (248)
Q Consensus 213 ilv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~qri 248 (248)
|||||+++++|+|+|++++||++|+|+|+..|+||+
T Consensus 83 vLvaT~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~ 118 (170)
T 2yjt_D 83 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRI 118 (170)
Confidence 999999999999999999999999999999999996
No 64
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.88 E-value=1.4e-22 Score=176.91 Aligned_cols=102 Identities=14% Similarity=0.144 Sum_probs=89.9
Q ss_pred HHHHHHHHHhc---cCCCCEEEEecchHHHHHHHHHhhcCCCeeEEEecCCCHHHHHHHHHHhhcCCc---eEEEEeccc
Q 042003 147 KLLALRQSFAE---SLNPPVLIFVQSKERAKELYGELAFDGIRAGVIHSDLSQTQRENAVDDFRAGKT---WVLIATDVI 220 (248)
Q Consensus 147 ~~~~l~~~~~~---~~~~~~liF~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~---~ilv~T~~~ 220 (248)
|...+..++.. ..+.|+|||++....++.+.+.|...++.+..+||+++.++|+++++.|++|.. .+|++|+++
T Consensus 400 K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~ 479 (644)
T 1z3i_X 400 KMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAG 479 (644)
T ss_dssp HHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGS
T ss_pred HHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccc
Confidence 44444444432 346899999999999999999999999999999999999999999999999865 489999999
Q ss_pred ccCCCCCCCcEEEeccCCCCcccceecC
Q 042003 221 ARGMDFKGVNCVINYDFPDSGAAYIHRI 248 (248)
Q Consensus 221 ~~Gidip~~~~Vi~~~~p~~~~~~~qri 248 (248)
++|+|++++++||+||+|||+..|.||+
T Consensus 480 g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~ 507 (644)
T 1z3i_X 480 GCGLNLIGANRLVMFDPDWNPANDEQAM 507 (644)
T ss_dssp CTTCCCTTEEEEEECSCCSSHHHHHHHH
T ss_pred cCCcccccCCEEEEECCCCCccHHHHHH
Confidence 9999999999999999999999999974
No 65
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.88 E-value=1.1e-22 Score=161.23 Aligned_cols=114 Identities=34% Similarity=0.521 Sum_probs=105.9
Q ss_pred ceeEEEEcCCchhHHHHHHHHHhccCCCCEEEEecchHHHHHHHHHhhcCCCeeEEEecCCCHHHHHHHHHHhhcCCceE
Q 042003 134 IKQKLVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKERAKELYGELAFDGIRAGVIHSDLSQTQRENAVDDFRAGKTWV 213 (248)
Q Consensus 134 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~liF~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~i 213 (248)
+.++++.+.. ..|...+..++....++++||||++++.++.+++.|...++.+..+||+|++++|+.+++.|++|+.+|
T Consensus 3 v~~~~i~~~~-~~K~~~L~~ll~~~~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~v 81 (300)
T 3i32_A 3 YEEEAVPAPV-RGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRV 81 (300)
T ss_dssp SEEEEEECCS-SSHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCCE
T ss_pred eEEEEEECCH-HHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCceE
Confidence 4456665555 569999999998877899999999999999999999999999999999999999999999999999999
Q ss_pred EEEecccccCCCCCCCcEEEeccCCCCcccceecC
Q 042003 214 LIATDVIARGMDFKGVNCVINYDFPDSGAAYIHRI 248 (248)
Q Consensus 214 lv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~qri 248 (248)
||||+++++|+|+|++++||+||+|+|...|+||+
T Consensus 82 LVaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~ 116 (300)
T 3i32_A 82 LVATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRS 116 (300)
T ss_dssp EEECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHH
T ss_pred EEEechhhcCccccceeEEEEcCCCCCHHHHHHHc
Confidence 99999999999999999999999999999999984
No 66
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.88 E-value=8.5e-23 Score=178.33 Aligned_cols=190 Identities=22% Similarity=0.242 Sum_probs=131.1
Q ss_pred eChHHHHHHHhcCCcccCceeEEEEecccccccc-Ccccc--------------cchhHhh-------hCCCccceeEEE
Q 042003 43 STPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEV-GNLLK--------------HIDPVVK-------ACSNPSIVRSLF 100 (248)
Q Consensus 43 ~Tp~~l~~~~~~~~~~~~~~~~lIiDEah~~~~~-~~~~~--------------~~~~~~~-------~~~~~~~~~i~~ 100 (248)
+||++|.+++..+. ++|+||+|++.+. +.+.. .+...+. .+.+...|++++
T Consensus 320 ~tpg~LlDyl~~~~-------llVlDEa~~~l~~~~~~~~~~~~~~~~l~~~G~~lp~~l~~~~l~~~e~~~~~~q~i~~ 392 (661)
T 2d7d_A 320 STPYTLLDYFPDDF-------MIVVDESHVTIPQVRGMFNGDQARKQVLVDHGFRLPSALDNRPLRFEEFEKHMHNIVYV 392 (661)
T ss_dssp CCCBCGGGGSCSSC-------EEEEETHHHHHHHHHHHHHHHHHHHHHHHHTTSSCGGGGGSCCCCHHHHHHTCSEEEEE
T ss_pred CCccHHHHHcccCc-------EEEEecHHHHHHHHHHHHHHHHHHHHHHHHccccchhhhhcccccHHHHhccCCCEEEE
Confidence 89999988875432 8999999986521 10100 0111110 001135788999
Q ss_pred EeecCchHHHHHHHhcCCcEEEEEcccccccccceeEEEEcCCchhHHHHHHHHHhc-c-CCCCEEEEecchHHHHHHHH
Q 042003 101 SATLPDFVEELARSIMHDAVRVIVGRKNTASESIKQKLVFAGSEEGKLLALRQSFAE-S-LNPPVLIFVQSKERAKELYG 178 (248)
Q Consensus 101 SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~-~~~~~liF~~~~~~~~~l~~ 178 (248)
|||+++..... ................+. ........+...+...+.. . .+.++||||+|+..++.+++
T Consensus 393 SAT~~~~~~~~----~~~~~~~~~r~~~l~~p~-----i~v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~ 463 (661)
T 2d7d_A 393 SATPGPYEIEH----TDEMVEQIIRPTGLLDPL-----IDVRPIEGQIDDLIGEIQARIERNERVLVTTLTKKMSEDLTD 463 (661)
T ss_dssp CSSCCHHHHHH----CSSCEEECCCTTCCCCCE-----EEEECSTTHHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHH
T ss_pred ecCCChhHHHh----hhCeeeeeecccCCCCCe-----EEEecccchHHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHH
Confidence 99987633221 112122111111111111 1122222333444333332 1 36799999999999999999
Q ss_pred HhhcCCCeeEEEecCCCHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCcEEEeccC-----CCCcccceecC
Q 042003 179 ELAFDGIRAGVIHSDLSQTQRENAVDDFRAGKTWVLIATDVIARGMDFKGVNCVINYDF-----PDSGAAYIHRI 248 (248)
Q Consensus 179 ~L~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gidip~~~~Vi~~~~-----p~~~~~~~qri 248 (248)
.|++.++++..+||++++.+|.++++.|++|+.+|||||+.+++|+|+|++++||+++. |.|..+|+||+
T Consensus 464 ~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d~~G~p~s~~~~iQr~ 538 (661)
T 2d7d_A 464 YLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTI 538 (661)
T ss_dssp HHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETTTTCCTTTTSHHHHHHHH
T ss_pred HHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEeCcccccCCCCHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999998 99999999985
No 67
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.88 E-value=1.9e-22 Score=176.25 Aligned_cols=190 Identities=22% Similarity=0.247 Sum_probs=130.1
Q ss_pred eChHHHHHHHhcCCcccCceeEEEEecccccccc-Ccccc--------------cchhHhh-------hCCCccceeEEE
Q 042003 43 STPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEV-GNLLK--------------HIDPVVK-------ACSNPSIVRSLF 100 (248)
Q Consensus 43 ~Tp~~l~~~~~~~~~~~~~~~~lIiDEah~~~~~-~~~~~--------------~~~~~~~-------~~~~~~~~~i~~ 100 (248)
+||++|.+.+... .++|+||+|++.+. +.+.. .+...+. .+.....|++++
T Consensus 314 ~tp~~LlDyl~~~-------~llVlDEah~~~~~~~~~~~~~~~~~~~l~~~G~~lp~~l~~~~l~~~e~~~~~~q~i~~ 386 (664)
T 1c4o_A 314 EPPYTLLDYFPED-------FLVFLDESHVTVPQLQGMYRGDYARKKTLVDYGFRLPSALDNRPLRFEEFLERVSQVVFV 386 (664)
T ss_dssp SCCCCGGGGSCTT-------CEEEEETHHHHHHHHHHHHHHHHHHHHHHHHTTSSCGGGGGSSCCCHHHHHHTCSEEEEE
T ss_pred CCchHHHHHHhhc-------cEEEEecccccHHHHHHHHHHHHHHHHHHHHccccchhhhhcCcccHHHHHhhcCCEEEE
Confidence 8999888877533 28999999986521 10110 0011110 001135688999
Q ss_pred EeecCchHHHHHHHhcCCcEEEEEcccccccccceeEEEEcCCchhHHHHHHHHHhcc--CCCCEEEEecchHHHHHHHH
Q 042003 101 SATLPDFVEELARSIMHDAVRVIVGRKNTASESIKQKLVFAGSEEGKLLALRQSFAES--LNPPVLIFVQSKERAKELYG 178 (248)
Q Consensus 101 SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~liF~~~~~~~~~l~~ 178 (248)
|||+++..... ................+ .........+...+...+... .+.++||||+|+..++.+++
T Consensus 387 SAT~~~~~~~~----~~~~~~~~~r~~~l~~p-----~i~v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~ 457 (664)
T 1c4o_A 387 SATPGPFELAH----SGRVVEQIIRPTGLLDP-----LVRVKPTENQILDLMEGIRERAARGERTLVTVLTVRMAEELTS 457 (664)
T ss_dssp ESSCCHHHHHH----CSEEEEECSCTTCCCCC-----EEEEECSTTHHHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHH
T ss_pred ecCCCHHHHHh----hhCeeeeeeccCCCCCC-----eEEEecccchHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHH
Confidence 99987633211 11111111111001111 111222223444443333321 36799999999999999999
Q ss_pred HhhcCCCeeEEEecCCCHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCcEEEeccC-----CCCcccceecC
Q 042003 179 ELAFDGIRAGVIHSDLSQTQRENAVDDFRAGKTWVLIATDVIARGMDFKGVNCVINYDF-----PDSGAAYIHRI 248 (248)
Q Consensus 179 ~L~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gidip~~~~Vi~~~~-----p~~~~~~~qri 248 (248)
.|.+.++++..+||++++.+|.++++.|++|+.+|||||+.+++|+|+|++++||+++. |.|..+|+||+
T Consensus 458 ~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d~d~~G~p~s~~~~iQr~ 532 (664)
T 1c4o_A 458 FLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTI 532 (664)
T ss_dssp HHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTTTSCSGGGSHHHHHHHH
T ss_pred HHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEEeCCcccCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998 99999999985
No 68
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.86 E-value=2.5e-21 Score=165.81 Aligned_cols=149 Identities=19% Similarity=0.188 Sum_probs=114.2
Q ss_pred ceeEEEEeecCchHHHHHHHhcCCcEEEEEcccccccccceeEEEEcCCchhHHHHHHHHHhcc--CCCCEEEEecchHH
Q 042003 95 IVRSLFSATLPDFVEELARSIMHDAVRVIVGRKNTASESIKQKLVFAGSEEGKLLALRQSFAES--LNPPVLIFVQSKER 172 (248)
Q Consensus 95 ~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~liF~~~~~~ 172 (248)
..+.+||+|+.++..++...|..+ .+.+ +...+.....+.........+|...+.+.+... .++++||||+|++.
T Consensus 410 ~kL~GMTGTa~te~~Ef~~iY~l~--vv~I-Ptnkp~~R~d~~d~vy~t~~eK~~al~~~I~~~~~~gqpVLVFt~S~e~ 486 (822)
T 3jux_A 410 EKLAGMTGTAKTEESEFVQVYGME--VVVI-PTHKPMIRKDHDDLVFRTQKEKYEKIVEEIEKRYKKGQPVLVGTTSIEK 486 (822)
T ss_dssp SEEEEEESSCGGGHHHHHHHSCCC--EEEC-CCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESSHHH
T ss_pred hHHeEECCCCchHHHHHHHHhCCe--EEEE-CCCCCcceeecCcEEEecHHHHHHHHHHHHHHHhhCCCCEEEEECCHHH
Confidence 467899999998777776666433 2222 333333344443223446667888888877653 37899999999999
Q ss_pred HHHHHHHhhcCCCeeEEEecCCCHHHHHHHHHHhhcCCceEEEEecccccCCCCC--------CCcEEEeccCCCCcccc
Q 042003 173 AKELYGELAFDGIRAGVIHSDLSQTQRENAVDDFRAGKTWVLIATDVIARGMDFK--------GVNCVINYDFPDSGAAY 244 (248)
Q Consensus 173 ~~~l~~~L~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gidip--------~~~~Vi~~~~p~~~~~~ 244 (248)
++.+++.|++.|+++.++||+....++..+.++++.| .|+|||+++++|+|++ +..+||+++.|.|...|
T Consensus 487 sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVATdmAgRGtDI~lg~~V~~~GglhVInte~Pes~r~y 564 (822)
T 3jux_A 487 SELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIATNMAGRGTDIKLGPGVAELGGLCIIGTERHESRRID 564 (822)
T ss_dssp HHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT--CEEEEETTTTTTCCCCCCTTTTTTTSCEEEESSCCSSHHHH
T ss_pred HHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC--eEEEEcchhhCCcCccCCcchhhcCCCEEEecCCCCCHHHH
Confidence 9999999999999999999996555555556666666 5999999999999998 66799999999999999
Q ss_pred eecC
Q 042003 245 IHRI 248 (248)
Q Consensus 245 ~qri 248 (248)
.||+
T Consensus 565 ~qri 568 (822)
T 3jux_A 565 NQLR 568 (822)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 9984
No 69
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.83 E-value=1.7e-20 Score=169.73 Aligned_cols=234 Identities=13% Similarity=0.071 Sum_probs=145.8
Q ss_pred CcchHHHHHHHhhcCCCcEEEEcccchh---hhcccc-cCCCcEEEeChHHHHHHHhcCC--cccCceeEEEEecccccc
Q 042003 1 LATQTTRECKKLAKGNKFQIKLMKKELV---RSTDLS-KFSCDILISTPLRLRLAIRRKK--IDLSRVEYLVLDEADKLF 74 (248)
Q Consensus 1 L~~Q~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~i~v~Tp~~l~~~~~~~~--~~~~~~~~lIiDEah~~~ 74 (248)
|+.|+.+.++.+++.. +.++. .....+ ..+++|+|+||+++...+.... ..++...++|+||||+..
T Consensus 342 L~~Q~~~~f~~f~~~~-------v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~ 414 (1038)
T 2w00_A 342 LDYQTMKEYQRFSPDS-------VNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQ 414 (1038)
T ss_dssp CCHHHHHHHHTTSTTC-------SSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTH
T ss_pred HHHHHHHHHHHhcccc-------cccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhc
Confidence 7889999999887641 11211 222222 3578999999999998876542 245678999999999965
Q ss_pred ccCcccccchhHhhhCCCccceeEEEEeecCchHH----HHHHHhcCCcEEEEEccc---ccccccceeEEEE-------
Q 042003 75 EVGNLLKHIDPVVKACSNPSIVRSLFSATLPDFVE----ELARSIMHDAVRVIVGRK---NTASESIKQKLVF------- 140 (248)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~----~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~------- 140 (248)
.. .....+...+ ++.+++++|||+..... .....+++++........ .....++...+..
T Consensus 415 ~~----~~~~~I~~~~--p~a~~lgfTATP~~~~~~~~~~~t~~~FG~~i~~Y~l~~AI~dg~l~p~~v~y~~v~~~~~~ 488 (1038)
T 2w00_A 415 FG----EAQKNLKKKF--KRYYQFGFTGTPIFPENALGSETTASVFGRELHSYVITDAIRDEKVLKFKVDYNDVRPQFKS 488 (1038)
T ss_dssp HH----HHHHHHHHHC--SSEEEEEEESSCCCSTTCTTSCCHHHHHCSEEEEECHHHHHHHTSSCCEEEEECCCCGGGHH
T ss_pred ch----HHHHHHHHhC--CcccEEEEeCCccccccchhhhHHHHHhCCeeEeecHHHHHhCCCcCCeEEEEEeccchhhh
Confidence 32 2234455553 34789999999875321 122223333221110000 0000000000000
Q ss_pred -----------------cCCchhHHHHHHH-HHh---cc--------CCCCEEEEecchHHHHHHHHHhhcCC-------
Q 042003 141 -----------------AGSEEGKLLALRQ-SFA---ES--------LNPPVLIFVQSKERAKELYGELAFDG------- 184 (248)
Q Consensus 141 -----------------~~~~~~~~~~l~~-~~~---~~--------~~~~~liF~~~~~~~~~l~~~L~~~~------- 184 (248)
.-..+.+...+.. +++ .. .+.+++|||+|+..|..+++.|.+.+
T Consensus 489 ~~~e~d~~~~~~i~~~~~l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~ 568 (1038)
T 2w00_A 489 LETETDEKKLSAAENQQAFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANKS 568 (1038)
T ss_dssp HHTCCCHHHHHHTCSTTTTTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTS
T ss_pred ccccccHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhcccc
Confidence 0012223333322 222 11 23579999999999999999997643
Q ss_pred -----CeeE-EEecC----------C----------CHH-----------------------------HHHHHHHHhhcC
Q 042003 185 -----IRAG-VIHSD----------L----------SQT-----------------------------QRENAVDDFRAG 209 (248)
Q Consensus 185 -----~~v~-~~~~~----------~----------~~~-----------------------------~r~~~~~~f~~g 209 (248)
.++. ++||+ + ++. .|+++++.|++|
T Consensus 569 ~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g 648 (1038)
T 2w00_A 569 ATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQ 648 (1038)
T ss_dssp SSCCCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTT
T ss_pred cccccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHcC
Confidence 4554 45542 2 221 378899999999
Q ss_pred CceEEEEecccccCCCCCCCcEEEeccCCCCcccceecC
Q 042003 210 KTWVLIATDVIARGMDFKGVNCVINYDFPDSGAAYIHRI 248 (248)
Q Consensus 210 ~~~ilv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~qri 248 (248)
+.++||+|+.+.+|+|+|.+ +++.+|.|.+...|+||+
T Consensus 649 ~i~ILIvvd~lltGfDiP~l-~tlylDkpl~~~~liQaI 686 (1038)
T 2w00_A 649 DIDLLIVVGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAF 686 (1038)
T ss_dssp SSSEEEESSTTSSSCCCTTE-EEEEEESCCCHHHHHHHH
T ss_pred CCeEEEEcchHHhCcCcccc-cEEEEccCCCccceeehh
Confidence 99999999999999999999 778899999999999985
No 70
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.78 E-value=1.4e-18 Score=135.94 Aligned_cols=106 Identities=16% Similarity=0.241 Sum_probs=93.6
Q ss_pred CchhHHHHHHHHHhcc--CCCCEEEEecchHHHHHHHHHhhcC-CCeeEEEecCCCHHHHHHHHHHhhcC-Cce-EEEEe
Q 042003 143 SEEGKLLALRQSFAES--LNPPVLIFVQSKERAKELYGELAFD-GIRAGVIHSDLSQTQRENAVDDFRAG-KTW-VLIAT 217 (248)
Q Consensus 143 ~~~~~~~~l~~~~~~~--~~~~~liF~~~~~~~~~l~~~L~~~-~~~v~~~~~~~~~~~r~~~~~~f~~g-~~~-ilv~T 217 (248)
....|...+.+++... .+.|+||||++...++.+.+.|... ++.+..+||+++.++|+++++.|++| +.. +|++|
T Consensus 93 ~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st 172 (271)
T 1z5z_A 93 RRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSV 172 (271)
T ss_dssp TTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEEC
T ss_pred ccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEeh
Confidence 3457888888888765 5789999999999999999999885 99999999999999999999999998 666 78999
Q ss_pred cccccCCCCCCCcEEEeccCCCCcccceecC
Q 042003 218 DVIARGMDFKGVNCVINYDFPDSGAAYIHRI 248 (248)
Q Consensus 218 ~~~~~Gidip~~~~Vi~~~~p~~~~~~~qri 248 (248)
+++++|+|++.+++||+||+|||+..|.||+
T Consensus 173 ~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~ 203 (271)
T 1z5z_A 173 KAGGFGINLTSANRVIHFDRWWNPAVEDQAT 203 (271)
T ss_dssp CTTCCCCCCTTCSEEEECSCCSCTTTC----
T ss_pred hhhcCCcCcccCCEEEEECCCCChhHHHHHH
Confidence 9999999999999999999999999999985
No 71
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.77 E-value=3.3e-19 Score=137.85 Aligned_cols=124 Identities=27% Similarity=0.351 Sum_probs=104.5
Q ss_pred CcchHHHHHHHhhcCCCcEEEEcccchh---hhcccccCCCcEEEeChHHHHHHHhcCCcccCceeEEEEeccccccccC
Q 042003 1 LATQTTRECKKLAKGNKFQIKLMKKELV---RSTDLSKFSCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEVG 77 (248)
Q Consensus 1 L~~Q~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~v~Tp~~l~~~~~~~~~~~~~~~~lIiDEah~~~~~~ 77 (248)
||.|+++.++++.+..+ ..+..++|+. .+......+++|+|+||+++.+.+.++...+++++++|+||||++.+++
T Consensus 114 L~~Q~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~~ 192 (242)
T 3fe2_A 114 LAQQVQQVAAEYCRACR-LKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMG 192 (242)
T ss_dssp HHHHHHHHHHHHHHHTT-CCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHHTSCCCTTCCEEEETTHHHHHHTT
T ss_pred HHHHHHHHHHHHHhhcC-ceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCCcccccEEEEeCHHHHhhhC
Confidence 57899999999988887 4455555554 3334455679999999999999999888889999999999999999988
Q ss_pred cccccchhHhhhCCCccceeEEEEeecCchHHHHHHHhcCCcEEEEEccc
Q 042003 78 NLLKHIDPVVKACSNPSIVRSLFSATLPDFVEELARSIMHDAVRVIVGRK 127 (248)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~ 127 (248)
|...+..+++. .+...|++++|||+++....+...++.++..+.++..
T Consensus 193 -~~~~~~~i~~~-~~~~~q~~~~SAT~~~~~~~~~~~~l~~~~~i~~~~~ 240 (242)
T 3fe2_A 193 -FEPQIRKIVDQ-IRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGAL 240 (242)
T ss_dssp -CHHHHHHHHTT-SCSSCEEEEEESCCCHHHHHHHHHHCSSCEEEEECC-
T ss_pred -cHHHHHHHHHh-CCccceEEEEEeecCHHHHHHHHHHCCCCEEEEecCC
Confidence 89999999888 4567899999999999999999999999988877654
No 72
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.77 E-value=1.2e-18 Score=135.54 Aligned_cols=135 Identities=29% Similarity=0.449 Sum_probs=101.6
Q ss_pred CcchHHHHHHHhhcCCCcEEEEcccchh---hhcccccCCCcEEEeChHHHHHHHhcCCcccCceeEEEEeccccccccC
Q 042003 1 LATQTTRECKKLAKGNKFQIKLMKKELV---RSTDLSKFSCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEVG 77 (248)
Q Consensus 1 L~~Q~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~v~Tp~~l~~~~~~~~~~~~~~~~lIiDEah~~~~~~ 77 (248)
||.|+++.+++++...++ .+..+.|+. .+......+++|+|+||+++.+.+......+++++++|+||||++.+++
T Consensus 112 L~~q~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~ 190 (253)
T 1wrb_A 112 LAIQILSESQKFSLNTPL-RSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEADRMLDMG 190 (253)
T ss_dssp HHHHHHHHHHHHHTTSSC-CEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTTSBCCTTCCEEEEETHHHHHHTT
T ss_pred HHHHHHHHHHHHhccCCc-eEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcCCCChhhCCEEEEeCHHHHHhCc
Confidence 678999999999988774 444444444 2333445689999999999999999888888999999999999999887
Q ss_pred cccccchhHhhhCC-Cc--cceeEEEEeecCchHHHHHHHhcCCcEEEEEcccccccccceeE
Q 042003 78 NLLKHIDPVVKACS-NP--SIVRSLFSATLPDFVEELARSIMHDAVRVIVGRKNTASESIKQK 137 (248)
Q Consensus 78 ~~~~~~~~~~~~~~-~~--~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (248)
|...+..++..+. +. ..|++++|||+++...++...++.++..+.++.......++++.
T Consensus 191 -~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~q~ 252 (253)
T 1wrb_A 191 -FEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVGRVGSTSDSIKQE 252 (253)
T ss_dssp -CHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEEC------------
T ss_pred -hHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEECCCCCCcCCceec
Confidence 8888888887532 22 68999999999999999999999999888887766555555543
No 73
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.74 E-value=5.1e-18 Score=135.07 Aligned_cols=125 Identities=24% Similarity=0.173 Sum_probs=102.0
Q ss_pred CcchHHHHHHHhhcCCCcEEEEcccchhhhcccccCCCcEEEeChHHHHHHHhc-CCcccCceeEEEEeccccccccCcc
Q 042003 1 LATQTTRECKKLAKGNKFQIKLMKKELVRSTDLSKFSCDILISTPLRLRLAIRR-KKIDLSRVEYLVLDEADKLFEVGNL 79 (248)
Q Consensus 1 L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Tp~~l~~~~~~-~~~~~~~~~~lIiDEah~~~~~~~~ 79 (248)
||.|+++.++++++..+...+....|+.........+++|+|+||+++.+++.+ +.+.+++++++|+||||++.+...+
T Consensus 174 La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDEad~l~~~~~~ 253 (300)
T 3fmo_B 174 LALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGH 253 (300)
T ss_dssp HHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTCCCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETTHHHHHHSTTH
T ss_pred HHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhhcCCCCEEEECHHHHHHHHHhcCCCChhhceEEEEeCHHHHhhccCc
Confidence 688999999999887543556666666544444467899999999999999976 5667899999999999999874338
Q ss_pred cccchhHhhhCCCccceeEEEEeecCchHHHHHHHhcCCcEEEEEcc
Q 042003 80 LKHIDPVVKACSNPSIVRSLFSATLPDFVEELARSIMHDAVRVIVGR 126 (248)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~ 126 (248)
...+..+.+. .+..+|++++|||+++....+...++.+|..+.+..
T Consensus 254 ~~~~~~i~~~-~~~~~q~i~~SAT~~~~v~~~a~~~l~~p~~i~~~~ 299 (300)
T 3fmo_B 254 QDQSIRIQRM-LPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKR 299 (300)
T ss_dssp HHHHHHHHTT-SCTTCEEEEEESCCCHHHHHHHHHHSSSCEEEEECC
T ss_pred HHHHHHHHHh-CCCCCEEEEEeccCCHHHHHHHHHHCCCCeEEEecC
Confidence 8888888877 456899999999999999999999999998876543
No 74
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.74 E-value=9.7e-18 Score=127.65 Aligned_cols=123 Identities=25% Similarity=0.328 Sum_probs=100.1
Q ss_pred CcchHHHHHHHhhcCC----CcEEEEcccchh---hhcccccCCCcEEEeChHHHHHHHhcCCcccCceeEEEEeccccc
Q 042003 1 LATQTTRECKKLAKGN----KFQIKLMKKELV---RSTDLSKFSCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKL 73 (248)
Q Consensus 1 L~~Q~~~~~~~~~~~~----~~~~~~~~~~~~---~~~~~~~~~~~i~v~Tp~~l~~~~~~~~~~~~~~~~lIiDEah~~ 73 (248)
|+.|+++.++++.+.. + ..+....|+. ........+++|+|+||+++.+.+..+...+++++++|+||||++
T Consensus 84 L~~q~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~ 162 (219)
T 1q0u_A 84 LATQIYHETLKITKFCPKDRM-IVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLM 162 (219)
T ss_dssp HHHHHHHHHHHHHTTSCGGGC-CCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECSHHHH
T ss_pred HHHHHHHHHHHHhhhcccccc-eEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEEcCchHH
Confidence 5789999999998766 4 3444555554 223344568999999999999999888888899999999999999
Q ss_pred cccCcccccchhHhhhCCCccceeEEEEeecCchHHHHHHHhcCCcEEEEEcc
Q 042003 74 FEVGNLLKHIDPVVKACSNPSIVRSLFSATLPDFVEELARSIMHDAVRVIVGR 126 (248)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~ 126 (248)
.+++ +...+..+...+ +...|++++|||+++...++.+.++.+|..+....
T Consensus 163 ~~~~-~~~~l~~i~~~~-~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~~~~~~ 213 (219)
T 1q0u_A 163 LDMG-FITDVDQIAARM-PKDLQMLVFSATIPEKLKPFLKKYMENPTFVHVLE 213 (219)
T ss_dssp HHTT-CHHHHHHHHHTS-CTTCEEEEEESCCCGGGHHHHHHHCSSCEEEECC-
T ss_pred hhhC-hHHHHHHHHHhC-CcccEEEEEecCCCHHHHHHHHHHcCCCeEEEeec
Confidence 9887 888888888874 46789999999999999999999999998775443
No 75
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.74 E-value=5.5e-18 Score=129.80 Aligned_cols=119 Identities=29% Similarity=0.363 Sum_probs=96.6
Q ss_pred CcchHHHHHHHhhcCCCcEEEEcccchh---hhcccccCCCcEEEeChHHHHHHHhcCCcccCceeEEEEeccccccccC
Q 042003 1 LATQTTRECKKLAKGNKFQIKLMKKELV---RSTDLSKFSCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEVG 77 (248)
Q Consensus 1 L~~Q~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~v~Tp~~l~~~~~~~~~~~~~~~~lIiDEah~~~~~~ 77 (248)
||.|+++.++++.. .+ ..+...+|+. .......++++|+|+||+++.+.+..+...+++++++|+||||++.+++
T Consensus 106 L~~q~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~ 183 (228)
T 3iuy_A 106 LALHVEAECSKYSY-KG-LKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSITYLVIDEADKMLDME 183 (228)
T ss_dssp HHHHHHHHHHHHCC-TT-CCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTCCCCTTCCEEEECCHHHHHHTT
T ss_pred HHHHHHHHHHHhcc-cC-ceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCcCcccceEEEEECHHHHhccc
Confidence 57899999999863 34 3344445544 2233445679999999999999999888889999999999999999988
Q ss_pred cccccchhHhhhCCCccceeEEEEeecCchHHHHHHHhcCCcEEEE
Q 042003 78 NLLKHIDPVVKACSNPSIVRSLFSATLPDFVEELARSIMHDAVRVI 123 (248)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~ 123 (248)
+...+..++.. .+.+.|++++|||+++...++...++.+|..+.
T Consensus 184 -~~~~~~~i~~~-~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i~ 227 (228)
T 3iuy_A 184 -FEPQIRKILLD-VRPDRQTVMTSATWPDTVRQLALSYLKDPMIVY 227 (228)
T ss_dssp -CHHHHHHHHHH-SCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEE
T ss_pred -hHHHHHHHHHh-CCcCCeEEEEEeeCCHHHHHHHHHHCCCCEEEe
Confidence 88889998888 456789999999999999999999999887664
No 76
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.73 E-value=1.1e-17 Score=129.55 Aligned_cols=126 Identities=33% Similarity=0.492 Sum_probs=101.9
Q ss_pred CcchHHHHHHHhhcCCCcEEEEcccchhh----hcccccCCCcEEEeChHHHHHHHhcC--CcccCceeEEEEecccccc
Q 042003 1 LATQTTRECKKLAKGNKFQIKLMKKELVR----STDLSKFSCDILISTPLRLRLAIRRK--KIDLSRVEYLVLDEADKLF 74 (248)
Q Consensus 1 L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~v~Tp~~l~~~~~~~--~~~~~~~~~lIiDEah~~~ 74 (248)
||.|+++.++++....+ ..+....|+.. .......+++|+|+||+++.+.+... ...+++++++|+||||++.
T Consensus 110 L~~q~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~~~ 188 (245)
T 3dkp_A 110 LASQIHRELIKISEGTG-FRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLF 188 (245)
T ss_dssp HHHHHHHHHHHHTTTSC-CCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESSHHHHH
T ss_pred HHHHHHHHHHHHhcccC-ceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEeChHHhc
Confidence 68899999999998888 44455554441 22334567899999999999999876 4678999999999999998
Q ss_pred ccC--cccccchhHhhhCCCccceeEEEEeecCchHHHHHHHhcCCcEEEEEccc
Q 042003 75 EVG--NLLKHIDPVVKACSNPSIVRSLFSATLPDFVEELARSIMHDAVRVIVGRK 127 (248)
Q Consensus 75 ~~~--~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~ 127 (248)
+++ .+...+..++..+.....|+++||||+++...++...++.++..+.++..
T Consensus 189 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~~~~v~~~~~~~l~~p~~i~~~~~ 243 (245)
T 3dkp_A 189 EDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVISVSIGAR 243 (245)
T ss_dssp HHC--CHHHHHHHHHHHCCCTTCEEEEEESSCCHHHHHHHHHHSSSCEEEEECC-
T ss_pred ccccccHHHHHHHHHHhcCCCCcEEEEEeccCCHHHHHHHHHhCCCCEEEEeCCC
Confidence 753 37777778877766778999999999999999999999999998877654
No 77
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.73 E-value=1.3e-17 Score=125.75 Aligned_cols=120 Identities=22% Similarity=0.271 Sum_probs=98.5
Q ss_pred CcchHHHHHHHhhcCCCcEEEEcccchh---hhcccccCCCcEEEeChHHHHHHHhcCCcccCceeEEEEeccccccccC
Q 042003 1 LATQTTRECKKLAKGNKFQIKLMKKELV---RSTDLSKFSCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEVG 77 (248)
Q Consensus 1 L~~Q~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~v~Tp~~l~~~~~~~~~~~~~~~~lIiDEah~~~~~~ 77 (248)
|+.|+++.++++.+..+...+....|+. ........+++|+|+||+++.+.+.++...+++++++|+||||++.+.+
T Consensus 83 L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~ 162 (206)
T 1vec_A 83 LALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQD 162 (206)
T ss_dssp HHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHHHTSTT
T ss_pred HHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChHHhHhhC
Confidence 5789999999998876325555566655 2223345689999999999999999888888999999999999988876
Q ss_pred cccccchhHhhhCCCccceeEEEEeecCchHHHHHHHhcCCcEEE
Q 042003 78 NLLKHIDPVVKACSNPSIVRSLFSATLPDFVEELARSIMHDAVRV 122 (248)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~ 122 (248)
+...+..+...+ +...|++++|||+++...+....++.+|..+
T Consensus 163 -~~~~l~~i~~~~-~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i 205 (206)
T 1vec_A 163 -FVQIMEDIILTL-PKNRQILLYSATFPLSVQKFMNSHLEKPYEI 205 (206)
T ss_dssp -THHHHHHHHHHS-CTTCEEEEEESCCCHHHHHHHHHHCSSCEEE
T ss_pred -cHHHHHHHHHhC-CccceEEEEEeeCCHHHHHHHHHHcCCCeEe
Confidence 888888888874 4578999999999999999999999888654
No 78
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.72 E-value=1.2e-17 Score=128.65 Aligned_cols=122 Identities=25% Similarity=0.283 Sum_probs=95.0
Q ss_pred CcchHHHHHHHhhcCCCcEEEEcccchhh---hcccc-cCCCcEEEeChHHHHHHHhcCCcccCceeEEEEecccccccc
Q 042003 1 LATQTTRECKKLAKGNKFQIKLMKKELVR---STDLS-KFSCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEV 76 (248)
Q Consensus 1 L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~i~v~Tp~~l~~~~~~~~~~~~~~~~lIiDEah~~~~~ 76 (248)
|+.|+++.++++++..+.. +....|+.. +.... .+.++|+|+||+++.+.+..+...+++++++|+||||++.++
T Consensus 110 L~~q~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~ 188 (237)
T 3bor_A 110 LAQQIQKVILALGDYMGAT-CHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSR 188 (237)
T ss_dssp HHHHHHHHHHHHTTTTTCC-EEEECC-------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEESHHHHHHT
T ss_pred HHHHHHHHHHHHhhhcCce-EEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEEEECCchHhhcc
Confidence 5789999999999887733 444444442 22222 334899999999999999888888899999999999999888
Q ss_pred CcccccchhHhhhCCCccceeEEEEeecCchHHHHHHHhcCCcEEEEEc
Q 042003 77 GNLLKHIDPVVKACSNPSIVRSLFSATLPDFVEELARSIMHDAVRVIVG 125 (248)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~ 125 (248)
+ +...+..+++. .+...|++++|||+++...++...++.+|..+.+.
T Consensus 189 ~-~~~~l~~i~~~-~~~~~~~i~~SAT~~~~~~~~~~~~l~~p~~i~v~ 235 (237)
T 3bor_A 189 G-FKDQIYEIFQK-LNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILVK 235 (237)
T ss_dssp T-CHHHHHHHHHH-SCTTCEEEEECSSCCHHHHHHHHHHCSSCEEEC--
T ss_pred C-cHHHHHHHHHh-CCCCCeEEEEEEecCHHHHHHHHHHCCCCEEEEec
Confidence 7 88888888887 45678999999999999999999999998876543
No 79
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.72 E-value=8.5e-18 Score=130.41 Aligned_cols=121 Identities=26% Similarity=0.333 Sum_probs=99.5
Q ss_pred CcchHHHHHHHhhcCCCcEEEEcccchh---hhcccccCCCcEEEeChHHHHHHHhc-CCcccCceeEEEEecccccccc
Q 042003 1 LATQTTRECKKLAKGNKFQIKLMKKELV---RSTDLSKFSCDILISTPLRLRLAIRR-KKIDLSRVEYLVLDEADKLFEV 76 (248)
Q Consensus 1 L~~Q~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~v~Tp~~l~~~~~~-~~~~~~~~~~lIiDEah~~~~~ 76 (248)
|+.|+++.+++++...+ ..+..+.|+. .+......+++|+|+||+++.+.+.+ ....+++++++|+||||++.++
T Consensus 123 L~~q~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~ 201 (249)
T 3ber_A 123 LAFQISEQFEALGSSIG-VQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNM 201 (249)
T ss_dssp HHHHHHHHHHHHHGGGT-CCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHHHHHHT
T ss_pred HHHHHHHHHHHHhccCC-eeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcChhhhhcc
Confidence 57899999999988777 4445555554 23334456899999999999999886 4567899999999999999988
Q ss_pred CcccccchhHhhhCCCccceeEEEEeecCchHHHHHHHhcCCcEEEEE
Q 042003 77 GNLLKHIDPVVKACSNPSIVRSLFSATLPDFVEELARSIMHDAVRVIV 124 (248)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~ 124 (248)
+ +...+..+++. .+...|++++|||+++...++...++.+|..+.+
T Consensus 202 ~-~~~~l~~i~~~-~~~~~~~l~~SAT~~~~v~~~~~~~l~~p~~i~v 247 (249)
T 3ber_A 202 D-FETEVDKILKV-IPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAV 247 (249)
T ss_dssp T-CHHHHHHHHHS-SCSSSEEEEEESSCCHHHHHHHHHHCSSCEEEEC
T ss_pred C-hHHHHHHHHHh-CCCCCeEEEEeccCCHHHHHHHHHHCCCCEEEEe
Confidence 7 88888888887 4567899999999999999999999999987754
No 80
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.71 E-value=1.1e-17 Score=128.31 Aligned_cols=122 Identities=21% Similarity=0.229 Sum_probs=97.9
Q ss_pred CcchHHHHHHHhhcCCCcEEEEcccchhh--hcccccCCCcEEEeChHHHHHHHhcCCcccCceeEEEEeccccccccCc
Q 042003 1 LATQTTRECKKLAKGNKFQIKLMKKELVR--STDLSKFSCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEVGN 78 (248)
Q Consensus 1 L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~v~Tp~~l~~~~~~~~~~~~~~~~lIiDEah~~~~~~~ 78 (248)
|+.|+++.+++++.......+..+.|+.. .......+++|+|+||+++.+.+..+...+++++++|+||||++.+++.
T Consensus 104 L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~ 183 (230)
T 2oxc_A 104 IAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLKKCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLLEEGS 183 (230)
T ss_dssp HHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHTTSCSEEEECHHHHHHHHHTTSSCGGGCCEEEESSHHHHHSTTS
T ss_pred HHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhccCCCEEEECHHHHHHHHhcCCcccccCCEEEeCCchHhhcCcc
Confidence 67899999999987652255555666542 2222234799999999999999988888889999999999999988866
Q ss_pred ccccchhHhhhCCCccceeEEEEeecCchHHHHHHHhcCCcEEEE
Q 042003 79 LLKHIDPVVKACSNPSIVRSLFSATLPDFVEELARSIMHDAVRVI 123 (248)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~ 123 (248)
|...+..+++.+ +...|++++|||+++...+....++++|..+.
T Consensus 184 ~~~~~~~i~~~~-~~~~~~l~lSAT~~~~~~~~~~~~~~~p~~i~ 227 (230)
T 2oxc_A 184 FQEQINWIYSSL-PASKQMLAVSATYPEFLANALTKYMRDPTFVR 227 (230)
T ss_dssp SHHHHHHHHHHS-CSSCEEEEEESCCCHHHHHHHTTTCSSCEEEC
T ss_pred hHHHHHHHHHhC-CCCCeEEEEEeccCHHHHHHHHHHcCCCeEEE
Confidence 888888888874 55789999999999998899988988887664
No 81
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.71 E-value=1.9e-17 Score=126.38 Aligned_cols=123 Identities=24% Similarity=0.307 Sum_probs=95.9
Q ss_pred CcchHHHHHHHhhcCCCcEEEEcccchhhhc--ccccCCCcEEEeChHHHHHHHhcCCcccCceeEEEEeccccccccCc
Q 042003 1 LATQTTRECKKLAKGNKFQIKLMKKELVRST--DLSKFSCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEVGN 78 (248)
Q Consensus 1 L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~v~Tp~~l~~~~~~~~~~~~~~~~lIiDEah~~~~~~~ 78 (248)
|+.|+++.++++....+ ..+....|+.... .....+++|+|+||+++.+.+.++...+++++++|+||||++.+++
T Consensus 94 L~~q~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~- 171 (224)
T 1qde_A 94 LALQIQKVVMALAFHMD-IKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSG- 171 (224)
T ss_dssp HHHHHHHHHHHHTTTSC-CCEEEECC----------CTTCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHTT-
T ss_pred HHHHHHHHHHHHhcccC-ceEEEEeCCcchHHHHhcCCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEcChhHHhhhh-
Confidence 57899999999988877 4445555554221 1122349999999999999999888888999999999999998887
Q ss_pred ccccchhHhhhCCCccceeEEEEeecCchHHHHHHHhcCCcEEEEEcc
Q 042003 79 LLKHIDPVVKACSNPSIVRSLFSATLPDFVEELARSIMHDAVRVIVGR 126 (248)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~ 126 (248)
+...+..+... .+...|++++|||+++...++...++.+|..+.+..
T Consensus 172 ~~~~l~~i~~~-~~~~~~~i~lSAT~~~~~~~~~~~~~~~p~~i~~~~ 218 (224)
T 1qde_A 172 FKEQIYQIFTL-LPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKK 218 (224)
T ss_dssp CHHHHHHHHHH-SCTTCEEEEEESSCCHHHHHHHHHHCSSCEEEC---
T ss_pred hHHHHHHHHHh-CCccCeEEEEEeecCHHHHHHHHHHCCCCEEEEecC
Confidence 88888888887 456789999999999999999999999998776544
No 82
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.70 E-value=1.2e-17 Score=130.52 Aligned_cols=117 Identities=26% Similarity=0.276 Sum_probs=95.7
Q ss_pred CcchHHHHHHHhhcCCCcEEEEcccchh---hhcccccCCCcEEEeChHHHHHHHhcC-CcccCceeEEEEecccccccc
Q 042003 1 LATQTTRECKKLAKGNKFQIKLMKKELV---RSTDLSKFSCDILISTPLRLRLAIRRK-KIDLSRVEYLVLDEADKLFEV 76 (248)
Q Consensus 1 L~~Q~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~v~Tp~~l~~~~~~~-~~~~~~~~~lIiDEah~~~~~ 76 (248)
||.|+++.+++++...+ ..+....|+. ........+++|+|+||+++.+.+... ...+++++++|+||||++.++
T Consensus 138 La~q~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEah~l~~~ 216 (262)
T 3ly5_A 138 LAMQTFGVLKELMTHHV-HTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDV 216 (262)
T ss_dssp HHHHHHHHHHHHTTTCC-SCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSHHHHHHT
T ss_pred HHHHHHHHHHHHHhhcC-ceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcChHHHhhh
Confidence 68899999999998887 4455555554 223334457999999999999988775 467899999999999999998
Q ss_pred CcccccchhHhhhCCCccceeEEEEeecCchHHHHHHHhcCCcE
Q 042003 77 GNLLKHIDPVVKACSNPSIVRSLFSATLPDFVEELARSIMHDAV 120 (248)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~ 120 (248)
+ |...+..+++. .+..+|++++|||+++..+.+.+.+++++.
T Consensus 217 ~-~~~~l~~i~~~-~~~~~q~l~~SAT~~~~v~~~~~~~l~~~~ 258 (262)
T 3ly5_A 217 G-FEEELKQIIKL-LPTRRQTMLFSATQTRKVEDLARISLKKEP 258 (262)
T ss_dssp T-CHHHHHHHHHH-SCSSSEEEEECSSCCHHHHHHHHHHCSSCC
T ss_pred h-HHHHHHHHHHh-CCCCCeEEEEEecCCHHHHHHHHHHcCCCC
Confidence 8 89999999888 456789999999999999999988876554
No 83
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.69 E-value=3.5e-17 Score=125.93 Aligned_cols=122 Identities=26% Similarity=0.290 Sum_probs=97.4
Q ss_pred CcchHHHHHHHhhcCCCcEEEEcccchhh--hcccccCCCcEEEeChHHHHHHHhcC-CcccCceeEEEEeccccccccC
Q 042003 1 LATQTTRECKKLAKGNKFQIKLMKKELVR--STDLSKFSCDILISTPLRLRLAIRRK-KIDLSRVEYLVLDEADKLFEVG 77 (248)
Q Consensus 1 L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~v~Tp~~l~~~~~~~-~~~~~~~~~lIiDEah~~~~~~ 77 (248)
|+.|+++.++++++..+ ..+..+.|+.. .......+++|+|+||+++.+.+... ...+.+++++|+||||++.+++
T Consensus 109 L~~q~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~~~~~ 187 (236)
T 2pl3_A 109 LAYQTFEVLRKVGKNHD-FSAGLIIGGKDLKHEAERINNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDMG 187 (236)
T ss_dssp HHHHHHHHHHHHTTTSS-CCEEEECCC--CHHHHHHHTTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETTHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCCC-eeEEEEECCCCHHHHHHhCCCCCEEEECHHHHHHHHHhcCCcccccccEEEEeChHHHhcCC
Confidence 57899999999998877 44555555542 11122257999999999999988765 4667899999999999999887
Q ss_pred cccccchhHhhhCCCccceeEEEEeecCchHHHHHHHhcCCcEEEEEc
Q 042003 78 NLLKHIDPVVKACSNPSIVRSLFSATLPDFVEELARSIMHDAVRVIVG 125 (248)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~ 125 (248)
+...+..++.. .+...|++++|||+++...++.+.++.+|..+.+.
T Consensus 188 -~~~~~~~i~~~-~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~i~~~ 233 (236)
T 2pl3_A 188 -FADTMNAVIEN-LPKKRQTLLFSATQTKSVKDLARLSLKNPEYVWVH 233 (236)
T ss_dssp -THHHHHHHHHT-SCTTSEEEEEESSCCHHHHHHHHHSCSSCEEEECC
T ss_pred -cHHHHHHHHHh-CCCCCeEEEEEeeCCHHHHHHHHHhCCCCEEEEeC
Confidence 88888888887 45678999999999999999999999999877543
No 84
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.69 E-value=3.2e-17 Score=124.81 Aligned_cols=122 Identities=23% Similarity=0.319 Sum_probs=96.5
Q ss_pred CcchHHHHHHHhhcCCCcEEEEcccchhh---hc-ccccCCCcEEEeChHHHHHHHhcCCcccCceeEEEEecccccccc
Q 042003 1 LATQTTRECKKLAKGNKFQIKLMKKELVR---ST-DLSKFSCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEV 76 (248)
Q Consensus 1 L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~i~v~Tp~~l~~~~~~~~~~~~~~~~lIiDEah~~~~~ 76 (248)
|+.|+++.++++.+..+...+..+.|+.. .. ......++|+|+||+++.+.+......+++++++|+||||++.++
T Consensus 94 L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~ 173 (220)
T 1t6n_A 94 LAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQ 173 (220)
T ss_dssp HHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESHHHHHSS
T ss_pred HHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEcCHHHHhcc
Confidence 57899999999987762255555666542 11 222346799999999999999988888899999999999999875
Q ss_pred CcccccchhHhhhCCCccceeEEEEeecCchHHHHHHHhcCCcEEEE
Q 042003 77 GNLLKHIDPVVKACSNPSIVRSLFSATLPDFVEELARSIMHDAVRVI 123 (248)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~ 123 (248)
..+...+..+++. .+...|++++|||+++...++...++.+|..+.
T Consensus 174 ~~~~~~~~~i~~~-~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~ 219 (220)
T 1t6n_A 174 LDMRRDVQEIFRM-TPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIF 219 (220)
T ss_dssp HHHHHHHHHHHHT-SCSSSEEEEEESCCCTTTHHHHHTTCSSCEEEE
T ss_pred cCcHHHHHHHHHh-CCCcCeEEEEEeecCHHHHHHHHHHcCCCeEEe
Confidence 3377778888776 456789999999999999999999999987653
No 85
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.69 E-value=4.7e-17 Score=122.65 Aligned_cols=119 Identities=33% Similarity=0.418 Sum_probs=96.7
Q ss_pred CcchHHHHHHHhhcCCCcEEEEcccchh---hhcccccCCCcEEEeChHHHHHHHhcCCcccCceeEEEEeccccccccC
Q 042003 1 LATQTTRECKKLAKGNKFQIKLMKKELV---RSTDLSKFSCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEVG 77 (248)
Q Consensus 1 L~~Q~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~v~Tp~~l~~~~~~~~~~~~~~~~lIiDEah~~~~~~ 77 (248)
|+.|+++.++++..... +....|+. ........+++|+|+||+++.+.+..+...+++++++|+||||++.+++
T Consensus 84 L~~q~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~ 160 (207)
T 2gxq_A 84 LALQVASELTAVAPHLK---VVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSMG 160 (207)
T ss_dssp HHHHHHHHHHHHCTTSC---EEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHHHHHTT
T ss_pred HHHHHHHHHHHHhhcce---EEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhHhhccc
Confidence 57899999999887643 33444443 2333344679999999999999999888888999999999999998877
Q ss_pred cccccchhHhhhCCCccceeEEEEeecCchHHHHHHHhcCCcEEEEE
Q 042003 78 NLLKHIDPVVKACSNPSIVRSLFSATLPDFVEELARSIMHDAVRVIV 124 (248)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~ 124 (248)
+...+..++.. .+...|++++|||+++...++...++++|..+.+
T Consensus 161 -~~~~~~~i~~~-~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~~ 205 (207)
T 2gxq_A 161 -FEEEVEALLSA-TPPSRQTLLFSATLPSWAKRLAERYMKNPVLINV 205 (207)
T ss_dssp -CHHHHHHHHHT-SCTTSEEEEECSSCCHHHHHHHHHHCSSCEEEEC
T ss_pred -hHHHHHHHHHh-CCccCeEEEEEEecCHHHHHHHHHHcCCCeEEEc
Confidence 88888888877 4567899999999999999999999999877643
No 86
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.56 E-value=9.2e-14 Score=121.71 Aligned_cols=73 Identities=16% Similarity=0.191 Sum_probs=58.3
Q ss_pred CcchHHHHHHHhhcCCCcEEEEcccchh-hhcccccCCCcEEEeChHHH-HHHHhcC------CcccC---ceeEEEEec
Q 042003 1 LATQTTRECKKLAKGNKFQIKLMKKELV-RSTDLSKFSCDILISTPLRL-RLAIRRK------KIDLS---RVEYLVLDE 69 (248)
Q Consensus 1 L~~Q~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~v~Tp~~l-~~~~~~~------~~~~~---~~~~lIiDE 69 (248)
||.|.++++..+.+.++ .++.+++|+. .+......+++|+|+||+.+ .+++..+ ...++ ++.++|+||
T Consensus 132 LA~Qdae~m~~l~~~lG-Lsv~~i~Gg~~~~~r~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDE 210 (997)
T 2ipc_A 132 LARRDAEWMGPVYRGLG-LSVGVIQHASTPAERRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDE 210 (997)
T ss_dssp HHHHHHHHHHHHHHTTT-CCEEECCTTCCHHHHHHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETT
T ss_pred HHHHHHHHHHHHHHhcC-CeEEEEeCCCCHHHHHHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEec
Confidence 78999999999999999 5555555554 44444556799999999999 6777665 24577 899999999
Q ss_pred ccccc
Q 042003 70 ADKLF 74 (248)
Q Consensus 70 ah~~~ 74 (248)
+|.++
T Consensus 211 aDsmL 215 (997)
T 2ipc_A 211 VDSIL 215 (997)
T ss_dssp HHHHT
T ss_pred hHHHH
Confidence 99876
No 87
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.24 E-value=8e-12 Score=107.10 Aligned_cols=84 Identities=18% Similarity=0.328 Sum_probs=54.4
Q ss_pred HHHHHHHhccCCCCEEEEecchHHHHHHHHHhhcCCCeeEEEecCCCHHHHHHHHHHhhcCCceEEE--EecccccCCCC
Q 042003 149 LALRQSFAESLNPPVLIFVQSKERAKELYGELAFDGIRAGVIHSDLSQTQRENAVDDFRAGKTWVLI--ATDVIARGMDF 226 (248)
Q Consensus 149 ~~l~~~~~~~~~~~~liF~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~ilv--~T~~~~~Gidi 226 (248)
..+.+++... +++++||++|....+.+++.|... . ...+|.. .++.++++.|+++. .|++ +|..+++|||+
T Consensus 374 ~~l~~~~~~~-~g~~lvff~S~~~~~~v~~~l~~~--~-~~~q~~~--~~~~~~l~~f~~~~-~il~~V~~~~~~EGiD~ 446 (540)
T 2vl7_A 374 ILLKRIYENS-SKSVLVFFPSYEMLESVRIHLSGI--P-VIEENKK--TRHEEVLELMKTGK-YLVMLVMRAKESEGVEF 446 (540)
T ss_dssp HHHHHHHHTC-SSEEEEEESCHHHHHHHHTTCTTS--C-EEESTTT--CCHHHHHHHHHTSC-CEEEEEC----------
T ss_pred HHHHHHHHhC-CCCEEEEeCCHHHHHHHHHHhccC--c-eEecCCC--CcHHHHHHHHhcCC-eEEEEEecCceecceec
Confidence 3444555543 679999999999999999999752 3 3445543 46888999998865 5666 88999999999
Q ss_pred CC----CcEEEeccCCC
Q 042003 227 KG----VNCVINYDFPD 239 (248)
Q Consensus 227 p~----~~~Vi~~~~p~ 239 (248)
|+ +++||+++.|.
T Consensus 447 ~~~~~~~~~Vii~~lPf 463 (540)
T 2vl7_A 447 REKENLFESLVLAGLPY 463 (540)
T ss_dssp -----CEEEEEEESCCC
T ss_pred CCCcccccEEEEECCCC
Confidence 97 89999999994
No 88
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.18 E-value=4.4e-12 Score=95.80 Aligned_cols=101 Identities=18% Similarity=0.103 Sum_probs=60.2
Q ss_pred Ccch-HHHHHHHhhcCCCcEEEEcccchhhhc---ccccCCCcEEEeChHHHHHHHhcCC------cccCceeEEEEecc
Q 042003 1 LATQ-TTRECKKLAKGNKFQIKLMKKELVRST---DLSKFSCDILISTPLRLRLAIRRKK------IDLSRVEYLVLDEA 70 (248)
Q Consensus 1 L~~Q-~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~v~Tp~~l~~~~~~~~------~~~~~~~~lIiDEa 70 (248)
|+.| +.+.++++... + ..+....|+.... .....+++|+|+||+.+.+.+.... ..+.+++++|+|||
T Consensus 94 L~~q~~~~~~~~~~~~-~-~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEa 171 (216)
T 3b6e_A 94 LVEQLFRKEFQPFLKK-W-YRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDEC 171 (216)
T ss_dssp HHHHHHHHTHHHHHTT-T-SCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC
T ss_pred HHHHHHHHHHHHHhcc-C-ceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECc
Confidence 4567 77788887765 3 3344455544221 1223469999999999999888743 56789999999999
Q ss_pred ccccccCcccccchhHhhhC------------CCccceeEEEEee
Q 042003 71 DKLFEVGNLLKHIDPVVKAC------------SNPSIVRSLFSAT 103 (248)
Q Consensus 71 h~~~~~~~~~~~~~~~~~~~------------~~~~~~~i~~SAT 103 (248)
|++.+.+.+...+..+.... ..+..+++++|||
T Consensus 172 h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 172 HHTNKEAVYNNIMRHYLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred hhhccCCcHHHHHHHHHHHhcccccccccccCCCCcceEEEeecC
Confidence 99976653343333333221 1256889999998
No 89
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.18 E-value=1.2e-11 Score=94.88 Aligned_cols=76 Identities=18% Similarity=0.242 Sum_probs=57.2
Q ss_pred CCCcEEEeChHHHHHHHhcCCcccCceeEEEEeccccc-cccCccc-ccchhHhhhCCCccceeEEEEeecCchHHHHHH
Q 042003 36 FSCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKL-FEVGNLL-KHIDPVVKACSNPSIVRSLFSATLPDFVEELAR 113 (248)
Q Consensus 36 ~~~~i~v~Tp~~l~~~~~~~~~~~~~~~~lIiDEah~~-~~~~~~~-~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~ 113 (248)
.+++|+|+||+++.+.+.. .+++++++|+||||.. .+.+ +. ..+..+.... ++.|++++|||++... +.+
T Consensus 154 ~~~~Ivv~Tpg~l~~~l~~---~l~~~~~lVlDEah~~~~~~~-~~~~~l~~i~~~~--~~~~~il~SAT~~~~~--~~~ 225 (235)
T 3llm_A 154 PHASIMFCTVGVLLRKLEA---GIRGISHVIVDEIHERDINTD-FLLVVLRDVVQAY--PEVRIVLMSATIDTSM--FCE 225 (235)
T ss_dssp SSSEEEEEEHHHHHHHHHH---CCTTCCEEEECCTTSCCHHHH-HHHHHHHHHHHHC--TTSEEEEEECSSCCHH--HHH
T ss_pred CCCeEEEECHHHHHHHHHh---hhcCCcEEEEECCccCCcchH-HHHHHHHHHHhhC--CCCeEEEEecCCCHHH--HHH
Confidence 5689999999999999876 3789999999999985 4444 44 4556666653 4689999999999755 555
Q ss_pred HhcCCc
Q 042003 114 SIMHDA 119 (248)
Q Consensus 114 ~~~~~~ 119 (248)
++.+.+
T Consensus 226 ~~~~~p 231 (235)
T 3llm_A 226 YFFNCP 231 (235)
T ss_dssp HTTSCC
T ss_pred HcCCCC
Confidence 554443
No 90
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.14 E-value=3.5e-11 Score=94.80 Aligned_cols=99 Identities=15% Similarity=0.053 Sum_probs=68.7
Q ss_pred CcchHHHHHHHhhcCCCcEEEEcccchhhhcccccCCCcEEEeChHHHHHHHhcCCcccCceeEEEEeccccccccCccc
Q 042003 1 LATQTTRECKKLAKGNKFQIKLMKKELVRSTDLSKFSCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEVGNLL 80 (248)
Q Consensus 1 L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Tp~~l~~~~~~~~~~~~~~~~lIiDEah~~~~~~~~~ 80 (248)
|+.|+.+.+++++...+ ..+..++++.........+++|+|+||+.+.+. ....+.+++++|+||||++.+.
T Consensus 169 L~~q~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~---~~~~~~~~~~vIiDEaH~~~~~---- 240 (282)
T 1rif_A 169 LTTQMADDFVDYRLFSH-AMIKKIGGGASKDDKYKNDAPVVVGTWQTVVKQ---PKEWFSQFGMMMNDECHLATGK---- 240 (282)
T ss_dssp HHHHHHHHHHHHTSCCG-GGEEECSTTCSSTTCCCTTCSEEEECHHHHTTS---CGGGGGGEEEEEEETGGGCCHH----
T ss_pred HHHHHHHHHHHhccccc-ceEEEEeCCCcchhhhccCCcEEEEchHHHHhh---HHHHHhhCCEEEEECCccCCcc----
Confidence 57899999999877655 334444444433334446789999999876433 2345788999999999998753
Q ss_pred ccchhHhhhCCCccceeEEEEeecCchHH
Q 042003 81 KHIDPVVKACSNPSIVRSLFSATLPDFVE 109 (248)
Q Consensus 81 ~~~~~~~~~~~~~~~~~i~~SAT~~~~~~ 109 (248)
.+..+++.+ ....+++++|||++....
T Consensus 241 -~~~~il~~~-~~~~~~l~lSATp~~~~~ 267 (282)
T 1rif_A 241 -SISSIISGL-NNCMFKFGLSGSLRDGKA 267 (282)
T ss_dssp -HHHHHTTTC-TTCCEEEEECSSCCTTST
T ss_pred -cHHHHHHHh-hcCCeEEEEeCCCCCcch
Confidence 344455542 346889999999976543
No 91
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.13 E-value=2.9e-09 Score=91.52 Aligned_cols=136 Identities=15% Similarity=0.150 Sum_probs=81.6
Q ss_pred ceeEEEEeecCchHHHHHHHhcCC-cEEEE--EcccccccccceeEEEEcCC------c---h----hHHHHHHHHHhcc
Q 042003 95 IVRSLFSATLPDFVEELARSIMHD-AVRVI--VGRKNTASESIKQKLVFAGS------E---E----GKLLALRQSFAES 158 (248)
Q Consensus 95 ~~~i~~SAT~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~------~---~----~~~~~l~~~~~~~ 158 (248)
..+|++|||+++ .......+..+ +.... ......+. -.+..+++.. . + .-.+.+.+++...
T Consensus 316 ~svIltSaTL~~-~~~~~~~lGl~~~~~~~~~~~~~~spf--~~~~~l~v~~~~~~~~~~r~~~~~~~l~~~i~~l~~~~ 392 (551)
T 3crv_A 316 LSIILMSGTLPP-REYMEKVWGIKRNMLYLDVEREIQKRV--SGSYECYIGVDVTSKYDMRSDNMWKRYADYLLKIYFQA 392 (551)
T ss_dssp CEEEEEESSCCC-HHHHHHTSCCCSCEEEEEHHHHTTSCC--SCEEEEEEECSCCCCTTTCCHHHHHHHHHHHHHHHHHC
T ss_pred ceEEEEeeCCCc-HHHHHHHhCCCCccccccceeecCCcC--CCceEEEEeCCCCCccccCCHHHHHHHHHHHHHHHHhC
Confidence 578999999998 55555555443 22210 00111111 1122222111 0 1 1223344444443
Q ss_pred CCCCEEEEecchHHHHHHHHHhhcCCCeeEEEecCCCHHHHHHHHHHhhcCCceEEEEe--cccccCCCCC-----CCcE
Q 042003 159 LNPPVLIFVQSKERAKELYGELAFDGIRAGVIHSDLSQTQRENAVDDFRAGKTWVLIAT--DVIARGMDFK-----GVNC 231 (248)
Q Consensus 159 ~~~~~liF~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T--~~~~~Gidip-----~~~~ 231 (248)
++.++||++|....+.+++. .+..+..=..+++ +.+.++.|+.+...||+|| ..+++|||+| .++.
T Consensus 393 -~g~~lvlF~Sy~~l~~v~~~---~~~~v~~q~~~~~---~~~~~~~~~~~~~~vl~~v~gg~~~EGiD~~d~~g~~l~~ 465 (551)
T 3crv_A 393 -KANVLVVFPSYEIMDRVMSR---ISLPKYVESEDSS---VEDLYSAISANNKVLIGSVGKGKLAEGIELRNNDRSLISD 465 (551)
T ss_dssp -SSEEEEEESCHHHHHHHHTT---CCSSEEECCSSCC---HHHHHHHTTSSSSCEEEEESSCCSCCSSCCEETTEESEEE
T ss_pred -CCCEEEEecCHHHHHHHHHh---cCCcEEEcCCCCC---HHHHHHHHHhcCCeEEEEEecceecccccccccCCcceeE
Confidence 67999999999999999973 3334443333445 3557777754444799998 6999999999 4789
Q ss_pred EEeccCCCC
Q 042003 232 VINYDFPDS 240 (248)
Q Consensus 232 Vi~~~~p~~ 240 (248)
||+.+.|..
T Consensus 466 viI~~lPfp 474 (551)
T 3crv_A 466 VVIVGIPYP 474 (551)
T ss_dssp EEEESCCCC
T ss_pred EEEEcCCCC
Confidence 999999853
No 92
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=98.62 E-value=3.1e-07 Score=79.83 Aligned_cols=137 Identities=12% Similarity=0.207 Sum_probs=81.8
Q ss_pred ceeEEEEeecCchHHHHHHHhcCCcEEEEEcccccccccceeEEEEcCC--------chh----HHHHHHHHHhccCCCC
Q 042003 95 IVRSLFSATLPDFVEELARSIMHDAVRVIVGRKNTASESIKQKLVFAGS--------EEG----KLLALRQSFAESLNPP 162 (248)
Q Consensus 95 ~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~----~~~~l~~~~~~~~~~~ 162 (248)
..+|++|||+.+ .......+..+......+.. -+..+ ...+.... .+. ..+.+.++++.. ++.
T Consensus 376 ~~~il~SaTL~p-~~~~~~~lGl~~~~~~~~sp-f~~~~--~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~l~~~~-~g~ 450 (620)
T 4a15_A 376 SKTIHMSGTLDP-FDFYSDITGFEIPFKKIGEI-FPPEN--RYIAYYDGVSSKYDTLDEKELDRMATVIEDIILKV-KKN 450 (620)
T ss_dssp SEEEEEESSCCS-HHHHHHHHCCCCCEEECCCC-SCGGG--EEEEEECCC-------CHHHHHHHHHHHHHHHHHH-CSC
T ss_pred CeEEEEccCCCc-HHHHHHHhCCCceeeecCCC-CCHHH--eEEEEeCCCCCcCCCCCHHHHHHHHHHHHHHHHhC-CCC
Confidence 356899999998 55555555433222222211 11111 11111111 111 123344455544 678
Q ss_pred EEEEecchHHHHHHHHHhhcCCCeeEEEecCCCHHHHHHHHHHhhcCCceEEEEec--ccccCCCCCC--CcEEEeccCC
Q 042003 163 VLIFVQSKERAKELYGELAFDGIRAGVIHSDLSQTQRENAVDDFRAGKTWVLIATD--VIARGMDFKG--VNCVINYDFP 238 (248)
Q Consensus 163 ~liF~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~--~~~~Gidip~--~~~Vi~~~~p 238 (248)
++||++|....+.+++.|+..+.+ ...+++..++.++++.|+ ++..||+++. .+++|||+|+ .+.||+.+.|
T Consensus 451 ~lvlF~Sy~~l~~v~~~l~~~~~~---~~q~~~~~~~~~ll~~f~-~~~~vL~~v~~gsf~EGiD~~g~~l~~viI~~lP 526 (620)
T 4a15_A 451 TIVYFPSYSLMDRVENRVSFEHMK---EYRGIDQKELYSMLKKFR-RDHGTIFAVSGGRLSEGINFPGNELEMIILAGLP 526 (620)
T ss_dssp EEEEESCHHHHHHHTSSCCSCCEE---CCTTCCSHHHHHHHHHHT-TSCCEEEEETTSCC--------CCCCEEEESSCC
T ss_pred EEEEeCCHHHHHHHHHHHHhcchh---ccCCCChhHHHHHHHHhc-cCCcEEEEEecCceeccccCCCCceEEEEEEcCC
Confidence 999999999999999999732222 455566678999999999 8888999985 8999999996 7799999999
Q ss_pred CC
Q 042003 239 DS 240 (248)
Q Consensus 239 ~~ 240 (248)
..
T Consensus 527 fp 528 (620)
T 4a15_A 527 FP 528 (620)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 93
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=98.60 E-value=4.6e-08 Score=74.87 Aligned_cols=86 Identities=15% Similarity=0.009 Sum_probs=55.9
Q ss_pred CcchHHHHHHHhhcCCCcEEEEcccchhhhcccccCCCcEEEeChHHHHHHHhcCCcccCceeEEEEeccccccccCccc
Q 042003 1 LATQTTRECKKLAKGNKFQIKLMKKELVRSTDLSKFSCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFEVGNLL 80 (248)
Q Consensus 1 L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Tp~~l~~~~~~~~~~~~~~~~lIiDEah~~~~~~~~~ 80 (248)
|+.|+++.++++ +...+..+.|+.. ...+|+|+||+.+...... ...+++++|+||||++.+.. +
T Consensus 145 L~~q~~~~~~~~----~~~~v~~~~g~~~------~~~~i~v~T~~~l~~~~~~---~~~~~~llIiDEaH~l~~~~-~- 209 (237)
T 2fz4_A 145 LAEQWKERLGIF----GEEYVGEFSGRIK------ELKPLTVSTYDSAYVNAEK---LGNRFMLLIFDEVHHLPAES-Y- 209 (237)
T ss_dssp HHHHHHHHHGGG----CGGGEEEESSSCB------CCCSEEEEEHHHHHHTHHH---HTTTCSEEEEECSSCCCTTT-H-
T ss_pred HHHHHHHHHHhC----CCCeEEEEeCCCC------CcCCEEEEeHHHHHhhHHH---hcccCCEEEEECCccCCChH-H-
Confidence 456777776663 3221444444332 3578999999998766542 12468899999999987654 3
Q ss_pred ccchhHhhhCCCccceeEEEEeecCc
Q 042003 81 KHIDPVVKACSNPSIVRSLFSATLPD 106 (248)
Q Consensus 81 ~~~~~~~~~~~~~~~~~i~~SAT~~~ 106 (248)
..+...+ ...+++++|||++.
T Consensus 210 ---~~i~~~~--~~~~~l~LSATp~r 230 (237)
T 2fz4_A 210 ---VQIAQMS--IAPFRLGLTATFER 230 (237)
T ss_dssp ---HHHHHTC--CCSEEEEEEESCC-
T ss_pred ---HHHHHhc--cCCEEEEEecCCCC
Confidence 2344442 25678999999875
No 94
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=97.64 E-value=0.00036 Score=55.13 Aligned_cols=95 Identities=12% Similarity=-0.002 Sum_probs=70.2
Q ss_pred chhHHHHHHHHHhcc--CCCCEEEEecchHHHHHHHHHhhcCCCeeEEEecCCCHHHHHHHHHHhhcCCceEEEEecccc
Q 042003 144 EEGKLLALRQSFAES--LNPPVLIFVQSKERAKELYGELAFDGIRAGVIHSDLSQTQRENAVDDFRAGKTWVLIATDVIA 221 (248)
Q Consensus 144 ~~~~~~~l~~~~~~~--~~~~~liF~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~ 221 (248)
...|+..|..++... .+.+++||+...+...-+.+.+...+++...+.|.....+++ . .++...+.+.|...+
T Consensus 107 ~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~~~k-~----~~~~~~i~Lltsag~ 181 (328)
T 3hgt_A 107 NSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSAAA-A----NDFSCTVHLFSSEGI 181 (328)
T ss_dssp TCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC------------CCSEEEEEEESSCC
T ss_pred cCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhhhhh-c----ccCCceEEEEECCCC
Confidence 346776666666543 267999999999999999999999999999999985543221 1 244555555577777
Q ss_pred cCCC-----CCCCcEEEeccCCCCccc
Q 042003 222 RGMD-----FKGVNCVINYDFPDSGAA 243 (248)
Q Consensus 222 ~Gid-----ip~~~~Vi~~~~p~~~~~ 243 (248)
-|+| +..++.||.||.-||+..
T Consensus 182 ~gin~~~~nl~~aD~VI~~DsdwNp~~ 208 (328)
T 3hgt_A 182 NFTKYPIKSKARFDMLICLDTTVDTSQ 208 (328)
T ss_dssp CTTTSCCCCCSCCSEEEECSTTCCTTS
T ss_pred CCcCcccccCCCCCEEEEECCCCCCCC
Confidence 7786 678999999999999876
No 95
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=96.92 E-value=0.0026 Score=56.65 Aligned_cols=75 Identities=20% Similarity=0.248 Sum_probs=64.6
Q ss_pred CCCEEEEecchHHHHHHHHHhhc----CCCeeEEEecCCCHHHHHHHHHHhhcCCceEEEEecc-cccCCCCCCCcEEEe
Q 042003 160 NPPVLIFVQSKERAKELYGELAF----DGIRAGVIHSDLSQTQRENAVDDFRAGKTWVLIATDV-IARGMDFKGVNCVIN 234 (248)
Q Consensus 160 ~~~~liF~~~~~~~~~l~~~L~~----~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~-~~~Gidip~~~~Vi~ 234 (248)
+.++++.++++.-+.+.++.+++ .+.++..+||+++..++...++.+.+|+.+|+|+|.. +...+++.++.+||.
T Consensus 417 g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l~lVVI 496 (780)
T 1gm5_A 417 GFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLGLVII 496 (780)
T ss_dssp TSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCCCEEEE
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccCCceEEe
Confidence 57899999999999888877754 3789999999999999999999999999999999965 455678888888873
No 96
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=96.38 E-value=0.009 Score=49.11 Aligned_cols=75 Identities=11% Similarity=0.139 Sum_probs=62.3
Q ss_pred CCCCEEEEecchHHHHHHHHHhhc---CCCeeEEEecCCCHHHHHHHHHHhhcCCceEEEEecccc----cCCCCCCCcE
Q 042003 159 LNPPVLIFVQSKERAKELYGELAF---DGIRAGVIHSDLSQTQRENAVDDFRAGKTWVLIATDVIA----RGMDFKGVNC 231 (248)
Q Consensus 159 ~~~~~liF~~~~~~~~~l~~~L~~---~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~----~Gidip~~~~ 231 (248)
.+.+++|.+|++.-+.++++.+++ .+.++..++|+.+..++....+.+.+|..+|+|+|.-.- .-++...+++
T Consensus 63 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~ 142 (414)
T 3oiy_A 63 KGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDF 142 (414)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTTCCCSE
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhccccccE
Confidence 367999999999999999999988 578999999999999999999999999899999996421 1244556777
Q ss_pred EE
Q 042003 232 VI 233 (248)
Q Consensus 232 Vi 233 (248)
||
T Consensus 143 iV 144 (414)
T 3oiy_A 143 VF 144 (414)
T ss_dssp EE
T ss_pred EE
Confidence 66
No 97
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=95.50 E-value=0.032 Score=51.85 Aligned_cols=75 Identities=11% Similarity=0.139 Sum_probs=62.7
Q ss_pred CCCEEEEecchHHHHHHHHHhhc---CCCeeEEEecCCCHHHHHHHHHHhhcCCceEEEEecccc----cCCCCCCCcEE
Q 042003 160 NPPVLIFVQSKERAKELYGELAF---DGIRAGVIHSDLSQTQRENAVDDFRAGKTWVLIATDVIA----RGMDFKGVNCV 232 (248)
Q Consensus 160 ~~~~liF~~~~~~~~~l~~~L~~---~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~----~Gidip~~~~V 232 (248)
+.+++|.++++.-+.++++.+++ .+.++..+||+++..++....+.+.+|..+|+|+|.-.- .-++..++++|
T Consensus 121 ~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~l~~~~l~~l 200 (1104)
T 4ddu_A 121 GKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDFV 200 (1104)
T ss_dssp TCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHHHHTSCCSEE
T ss_pred CCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHhhcccCcCEE
Confidence 67999999999999999999988 467999999999998999999999999999999996321 11455677777
Q ss_pred Ee
Q 042003 233 IN 234 (248)
Q Consensus 233 i~ 234 (248)
|.
T Consensus 201 Vi 202 (1104)
T 4ddu_A 201 FV 202 (1104)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 98
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=95.47 E-value=0.032 Score=52.10 Aligned_cols=74 Identities=20% Similarity=0.296 Sum_probs=63.0
Q ss_pred CCCEEEEecchHHHHHHHHHhhc----CCCeeEEEecCCCHHHHHHHHHHhhcCCceEEEEec-ccccCCCCCCCcEEE
Q 042003 160 NPPVLIFVQSKERAKELYGELAF----DGIRAGVIHSDLSQTQRENAVDDFRAGKTWVLIATD-VIARGMDFKGVNCVI 233 (248)
Q Consensus 160 ~~~~liF~~~~~~~~~l~~~L~~----~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~-~~~~Gidip~~~~Vi 233 (248)
+.+++|.+++..-+++.++.+++ .+.++..+++..+..++...++.+.+|..+|+|+|. .+...+++.++.+||
T Consensus 652 g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~~l~lvI 730 (1151)
T 2eyq_A 652 HKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 730 (1151)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSSEEEEE
T ss_pred CCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCccccccceEE
Confidence 56899999999999988888764 367899999999999999999999999999999995 455667777887776
No 99
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=95.11 E-value=0.21 Score=37.93 Aligned_cols=71 Identities=18% Similarity=0.344 Sum_probs=52.5
Q ss_pred CCCEEEEecchHHHHHHHHHhhcC----CCeeEEEecCCCHHHHHHHHHHhhcCCceEEEEecc-----c--ccCCCCCC
Q 042003 160 NPPVLIFVQSKERAKELYGELAFD----GIRAGVIHSDLSQTQRENAVDDFRAGKTWVLIATDV-----I--ARGMDFKG 228 (248)
Q Consensus 160 ~~~~liF~~~~~~~~~l~~~L~~~----~~~v~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~-----~--~~Gidip~ 228 (248)
+.+++|.++++.-+.++++.+++. +..+..++|+.+...+...+ .+..+|+|+|.. + ..++++..
T Consensus 111 ~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~I~v~Tp~~l~~~l~~~~~~~l~~ 186 (249)
T 3ber_A 111 RLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL----AKKPHIIIATPGRLIDHLENTKGFNLRA 186 (249)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHH----HTCCSEEEECHHHHHHHHHHSTTCCCTT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHh----cCCCCEEEECHHHHHHHHHcCCCcCccc
Confidence 467999999999999888877654 78899999998866544333 245789999953 1 24567788
Q ss_pred CcEEEe
Q 042003 229 VNCVIN 234 (248)
Q Consensus 229 ~~~Vi~ 234 (248)
++++|.
T Consensus 187 ~~~lVi 192 (249)
T 3ber_A 187 LKYLVM 192 (249)
T ss_dssp CCEEEE
T ss_pred cCEEEE
Confidence 887763
No 100
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=95.00 E-value=0.16 Score=37.50 Aligned_cols=72 Identities=18% Similarity=0.284 Sum_probs=53.5
Q ss_pred CCCEEEEecchHHHHHHHHHhhcC-----CCeeEEEecCCCHHHHHHHHHHhhcCCceEEEEecc-c-----ccCCCCCC
Q 042003 160 NPPVLIFVQSKERAKELYGELAFD-----GIRAGVIHSDLSQTQRENAVDDFRAGKTWVLIATDV-I-----ARGMDFKG 228 (248)
Q Consensus 160 ~~~~liF~~~~~~~~~l~~~L~~~-----~~~v~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~-~-----~~Gidip~ 228 (248)
..+++|.++++.-+.++++.+++. +..+..++|+.+...+.+ .+.++..+|+|+|.- + ...+++++
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~---~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~ 158 (220)
T 1t6n_A 82 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEE---VLKKNCPHIVVGTPGRILALARNKSLNLKH 158 (220)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHH---HHHHSCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHH---HHhcCCCCEEEeCHHHHHHHHHhCCCCccc
Confidence 348999999999999988887654 678999999988765543 344566789999953 1 23466777
Q ss_pred CcEEEe
Q 042003 229 VNCVIN 234 (248)
Q Consensus 229 ~~~Vi~ 234 (248)
++++|.
T Consensus 159 ~~~lVi 164 (220)
T 1t6n_A 159 IKHFIL 164 (220)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 887763
No 101
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=94.55 E-value=0.13 Score=38.51 Aligned_cols=69 Identities=13% Similarity=0.177 Sum_probs=51.5
Q ss_pred CCCEEEEecchHHHHHHHHHhhcC-----CCeeEEEecCCCHHHHHHHHHHhhcCCceEEEEeccc------ccCCCCCC
Q 042003 160 NPPVLIFVQSKERAKELYGELAFD-----GIRAGVIHSDLSQTQRENAVDDFRAGKTWVLIATDVI------ARGMDFKG 228 (248)
Q Consensus 160 ~~~~liF~~~~~~~~~l~~~L~~~-----~~~v~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~------~~Gidip~ 228 (248)
+.+++|.+++++-+.++++.+++. +.++..++|+.+..++...+ ...+|+|+|.-. ...+++.+
T Consensus 92 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~Iiv~Tp~~l~~~~~~~~~~~~~ 166 (230)
T 2oxc_A 92 STQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-----KKCHIAVGSPGRIKQLIELDYLNPGS 166 (230)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-----TSCSEEEECHHHHHHHHHTTSSCGGG
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-----cCCCEEEECHHHHHHHHhcCCccccc
Confidence 569999999999999998888753 67889999998876654433 246899999632 23456667
Q ss_pred CcEEE
Q 042003 229 VNCVI 233 (248)
Q Consensus 229 ~~~Vi 233 (248)
++++|
T Consensus 167 ~~~lV 171 (230)
T 2oxc_A 167 IRLFI 171 (230)
T ss_dssp CCEEE
T ss_pred CCEEE
Confidence 77766
No 102
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=94.49 E-value=0.083 Score=44.93 Aligned_cols=59 Identities=17% Similarity=0.249 Sum_probs=55.0
Q ss_pred CCCEEEEecchHHHHHHHHHhhcCCCeeEEEecCCCHHHHHHHHHHhhcCCceEEEEec
Q 042003 160 NPPVLIFVQSKERAKELYGELAFDGIRAGVIHSDLSQTQRENAVDDFRAGKTWVLIATD 218 (248)
Q Consensus 160 ~~~~liF~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~ 218 (248)
.++++|.++++.-+++..+.|+..+..+..++|+.+..++..+...+..|..+++++|.
T Consensus 65 ~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tp 123 (523)
T 1oyw_A 65 NGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAP 123 (523)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECH
T ss_pred CCCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 46899999999999999999999999999999999999999999999999999999995
No 103
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=94.21 E-value=0.085 Score=45.62 Aligned_cols=59 Identities=12% Similarity=0.093 Sum_probs=54.0
Q ss_pred CCCEEEEecchHHHHHHHHHhhcCCCeeEEEecCCCHHHHHHHHHHh--hcCCceEEEEec
Q 042003 160 NPPVLIFVQSKERAKELYGELAFDGIRAGVIHSDLSQTQRENAVDDF--RAGKTWVLIATD 218 (248)
Q Consensus 160 ~~~~liF~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~r~~~~~~f--~~g~~~ilv~T~ 218 (248)
.+.+||.++++.-+++.++.|++.++.+..++|+++..++..+...+ ..+..+|+++|.
T Consensus 84 ~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tp 144 (591)
T 2v1x_A 84 DGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTP 144 (591)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECH
T ss_pred CCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEECh
Confidence 56899999999999999999999999999999999999998888888 568889999997
No 104
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=93.98 E-value=0.28 Score=36.86 Aligned_cols=70 Identities=13% Similarity=0.183 Sum_probs=52.6
Q ss_pred CCCEEEEecchHHHHHHHHHhhc----CCCeeEEEecCCCHHHHHHHHHHhhcCCceEEEEecc-----cc-cCCCCCCC
Q 042003 160 NPPVLIFVQSKERAKELYGELAF----DGIRAGVIHSDLSQTQRENAVDDFRAGKTWVLIATDV-----IA-RGMDFKGV 229 (248)
Q Consensus 160 ~~~~liF~~~~~~~~~l~~~L~~----~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~-----~~-~Gidip~~ 229 (248)
+.+++|.++++.-+.++++.+++ .+..+..++|+.+.......+.. ..+|+|+|.- +. ..+++.++
T Consensus 102 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~I~v~Tp~~l~~~l~~~~~~~~~~ 177 (242)
T 3fe2_A 102 GPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLECGKTNLRRT 177 (242)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHH----CCSEEEECHHHHHHHHHHTSCCCTTC
T ss_pred CCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcC----CCCEEEECHHHHHHHHHcCCCCcccc
Confidence 56799999999999988877765 37889999999987766554432 4689999952 22 34577788
Q ss_pred cEEE
Q 042003 230 NCVI 233 (248)
Q Consensus 230 ~~Vi 233 (248)
+++|
T Consensus 178 ~~lV 181 (242)
T 3fe2_A 178 TYLV 181 (242)
T ss_dssp CEEE
T ss_pred cEEE
Confidence 8776
No 105
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=93.73 E-value=0.37 Score=35.01 Aligned_cols=70 Identities=16% Similarity=0.116 Sum_probs=49.9
Q ss_pred CCCEEEEecchHHHHHHHHHhhcC-----CCeeEEEecCCCHHHHHHHHHHhhcCCceEEEEecc-----cc-cCCCCCC
Q 042003 160 NPPVLIFVQSKERAKELYGELAFD-----GIRAGVIHSDLSQTQRENAVDDFRAGKTWVLIATDV-----IA-RGMDFKG 228 (248)
Q Consensus 160 ~~~~liF~~~~~~~~~l~~~L~~~-----~~~v~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~-----~~-~Gidip~ 228 (248)
+.+++|.++++.-+.++++.+++. +..+..++|+.+..+.... + .+..+|+|+|.- +. ...++.+
T Consensus 71 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~-~~~~~i~v~T~~~l~~~~~~~~~~~~~ 146 (206)
T 1vec_A 71 NIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMR---L-DDTVHVVIATPGRILDLIKKGVAKVDH 146 (206)
T ss_dssp SCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHH---T-TSCCSEEEECHHHHHHHHHTTCSCCTT
T ss_pred CeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHh---c-CCCCCEEEeCHHHHHHHHHcCCcCccc
Confidence 458999999999999888887643 5788899999886544322 2 345689999962 22 2346667
Q ss_pred CcEEE
Q 042003 229 VNCVI 233 (248)
Q Consensus 229 ~~~Vi 233 (248)
++++|
T Consensus 147 ~~~lV 151 (206)
T 1vec_A 147 VQMIV 151 (206)
T ss_dssp CCEEE
T ss_pred CCEEE
Confidence 77776
No 106
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=93.41 E-value=0.24 Score=37.18 Aligned_cols=71 Identities=11% Similarity=0.200 Sum_probs=44.5
Q ss_pred CCCEEEEecchHHHHHHHHHhhcC----CCeeEEEecCCCHHHHHHHHHHhhcCCceEEEEec-----ccc-cCCCCCCC
Q 042003 160 NPPVLIFVQSKERAKELYGELAFD----GIRAGVIHSDLSQTQRENAVDDFRAGKTWVLIATD-----VIA-RGMDFKGV 229 (248)
Q Consensus 160 ~~~~liF~~~~~~~~~l~~~L~~~----~~~v~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~-----~~~-~Gidip~~ 229 (248)
+.+++|.++++.-+.++++.+++. +..+..++|+.+... ..+.+..+..+|+|+|. .+. ..+++..+
T Consensus 98 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~ 174 (237)
T 3bor_A 98 ETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRN---EMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWI 174 (237)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------CCCSEEEECHHHHHHHHHTTSSCSTTC
T ss_pred CceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHH---HHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccC
Confidence 569999999999999998888654 567778888765433 33445567789999994 222 33566777
Q ss_pred cEEE
Q 042003 230 NCVI 233 (248)
Q Consensus 230 ~~Vi 233 (248)
++||
T Consensus 175 ~~lV 178 (237)
T 3bor_A 175 KMFV 178 (237)
T ss_dssp CEEE
T ss_pred cEEE
Confidence 7776
No 107
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=93.03 E-value=0.28 Score=36.66 Aligned_cols=69 Identities=16% Similarity=0.221 Sum_probs=48.7
Q ss_pred CCCEEEEecchHHHHHHHHHhhcC----CCeeEEEecCCCHHHHHHHHHHhhcCCceEEEEecc-c----cc--CCCCCC
Q 042003 160 NPPVLIFVQSKERAKELYGELAFD----GIRAGVIHSDLSQTQRENAVDDFRAGKTWVLIATDV-I----AR--GMDFKG 228 (248)
Q Consensus 160 ~~~~liF~~~~~~~~~l~~~L~~~----~~~v~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~-~----~~--Gidip~ 228 (248)
+.+++|.++++.-+.++++.+++. +..+..++|+.+.......+ +..+|+|+|.- + .. .++..+
T Consensus 97 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp~~l~~~l~~~~~~~~~~ 171 (236)
T 2pl3_A 97 GLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-----NNINILVCTPGRLLQHMDETVSFHATD 171 (236)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-----TTCSEEEECHHHHHHHHHHCSSCCCTT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-----CCCCEEEECHHHHHHHHHhcCCccccc
Confidence 568999999999999998888754 47888999987755443332 35689999952 1 12 366677
Q ss_pred CcEEE
Q 042003 229 VNCVI 233 (248)
Q Consensus 229 ~~~Vi 233 (248)
++++|
T Consensus 172 ~~~lV 176 (236)
T 2pl3_A 172 LQMLV 176 (236)
T ss_dssp CCEEE
T ss_pred ccEEE
Confidence 77776
No 108
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=92.95 E-value=0.44 Score=34.62 Aligned_cols=71 Identities=15% Similarity=0.198 Sum_probs=51.0
Q ss_pred CCCEEEEecchHHHHHHHHHhhcC--CCeeEEEecCCCHHHHHHHHHHhhcCCceEEEEecc-----c-ccCCCCCCCcE
Q 042003 160 NPPVLIFVQSKERAKELYGELAFD--GIRAGVIHSDLSQTQRENAVDDFRAGKTWVLIATDV-----I-ARGMDFKGVNC 231 (248)
Q Consensus 160 ~~~~liF~~~~~~~~~l~~~L~~~--~~~v~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~-----~-~~Gidip~~~~ 231 (248)
+.+++|.++++.-+.++++.+++. +.++..++|+.+.......+. +..+|+|+|.. + ...+++.++++
T Consensus 72 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~~~ 147 (207)
T 2gxq_A 72 KPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALL----RGADAVVATPGRALDYLRQGVLDLSRVEV 147 (207)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHH----HCCSEEEECHHHHHHHHHHTSSCCTTCSE
T ss_pred CCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhh----CCCCEEEECHHHHHHHHHcCCcchhhceE
Confidence 568999999999999999998765 467888999887654443332 24679999952 1 23456777777
Q ss_pred EEe
Q 042003 232 VIN 234 (248)
Q Consensus 232 Vi~ 234 (248)
||.
T Consensus 148 iVi 150 (207)
T 2gxq_A 148 AVL 150 (207)
T ss_dssp EEE
T ss_pred EEE
Confidence 763
No 109
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=92.85 E-value=0.34 Score=35.95 Aligned_cols=71 Identities=14% Similarity=0.255 Sum_probs=47.6
Q ss_pred CCCEEEEecchHHHHHHHHHhhcC---CCeeEEEecCCCHHHHHHHHHHhhcCCceEEEEecc------cccCCCCCCCc
Q 042003 160 NPPVLIFVQSKERAKELYGELAFD---GIRAGVIHSDLSQTQRENAVDDFRAGKTWVLIATDV------IARGMDFKGVN 230 (248)
Q Consensus 160 ~~~~liF~~~~~~~~~l~~~L~~~---~~~v~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~------~~~Gidip~~~ 230 (248)
+.+++|.++++.-+.++++.+++. +..+..++|+.+...+...+ .+ ..+|+|+|.- ....+++.+++
T Consensus 94 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~iiv~Tp~~l~~~~~~~~~~~~~~~ 169 (228)
T 3iuy_A 94 GPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIEDI---SK-GVDIIIATPGRLNDLQMNNSVNLRSIT 169 (228)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHHH---HS-CCSEEEECHHHHHHHHHTTCCCCTTCC
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHHh---cC-CCCEEEECHHHHHHHHHcCCcCcccce
Confidence 568999999999999999888763 67888889887655443322 23 4689999952 12356777888
Q ss_pred EEEe
Q 042003 231 CVIN 234 (248)
Q Consensus 231 ~Vi~ 234 (248)
+||.
T Consensus 170 ~lVi 173 (228)
T 3iuy_A 170 YLVI 173 (228)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7763
No 110
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=92.76 E-value=0.22 Score=36.85 Aligned_cols=69 Identities=14% Similarity=0.192 Sum_probs=44.2
Q ss_pred CCCEEEEecchHHHHHHHHHhhc----CCCeeEEEecCCCHHHHHHHHHHhhcCCceEEEEeccc------ccCCCCCCC
Q 042003 160 NPPVLIFVQSKERAKELYGELAF----DGIRAGVIHSDLSQTQRENAVDDFRAGKTWVLIATDVI------ARGMDFKGV 229 (248)
Q Consensus 160 ~~~~liF~~~~~~~~~l~~~L~~----~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~------~~Gidip~~ 229 (248)
+.+++|.++++.-+.++++.+++ .+..+..++|+.+..+.... +. ..+|+|+|... ....++..+
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~--~~~iiv~Tp~~l~~~~~~~~~~~~~~ 156 (224)
T 1qde_A 82 APQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEG---LR--DAQIVVGTPGRVFDNIQRRRFRTDKI 156 (224)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-------------CT--TCSEEEECHHHHHHHHHTTSSCCTTC
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhc---CC--CCCEEEECHHHHHHHHHhCCcchhhC
Confidence 56899999999999988887765 36788899998765544332 22 26899999632 345566777
Q ss_pred cEEE
Q 042003 230 NCVI 233 (248)
Q Consensus 230 ~~Vi 233 (248)
++||
T Consensus 157 ~~iV 160 (224)
T 1qde_A 157 KMFI 160 (224)
T ss_dssp CEEE
T ss_pred cEEE
Confidence 7776
No 111
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=92.63 E-value=0.63 Score=35.50 Aligned_cols=71 Identities=21% Similarity=0.375 Sum_probs=51.7
Q ss_pred CCCEEEEecchHHHHHHHHHhhc----CCCeeEEEecCCCHHHHHHHHHHhhcCCceEEEEec------cc-ccCCCCCC
Q 042003 160 NPPVLIFVQSKERAKELYGELAF----DGIRAGVIHSDLSQTQRENAVDDFRAGKTWVLIATD------VI-ARGMDFKG 228 (248)
Q Consensus 160 ~~~~liF~~~~~~~~~l~~~L~~----~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~------~~-~~Gidip~ 228 (248)
+.+++|.++++.-++++++.+++ .+..+..+.|+.+.......+ ..+ .+|+|+|. .. ..++++..
T Consensus 126 ~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~~-~~Iiv~Tp~~l~~~~~~~~~~~~~~ 201 (262)
T 3ly5_A 126 GTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKL---GNG-INIIVATPGRLLDHMQNTPGFMYKN 201 (262)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHH---HHC-CSEEEECHHHHHHHHHHCTTCCCTT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHh---cCC-CCEEEEcHHHHHHHHHccCCccccc
Confidence 57899999999999998888865 356788899988766544333 333 78999994 21 23467788
Q ss_pred CcEEEe
Q 042003 229 VNCVIN 234 (248)
Q Consensus 229 ~~~Vi~ 234 (248)
+++||.
T Consensus 202 l~~lVi 207 (262)
T 3ly5_A 202 LQCLVI 207 (262)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 887763
No 112
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=92.48 E-value=0.66 Score=37.29 Aligned_cols=71 Identities=18% Similarity=0.316 Sum_probs=53.3
Q ss_pred CCCEEEEecchHHHHHHHHHhhcC-----CCeeEEEecCCCHHHHHHHHHHhhcCCceEEEEecc-c-----ccCCCCCC
Q 042003 160 NPPVLIFVQSKERAKELYGELAFD-----GIRAGVIHSDLSQTQRENAVDDFRAGKTWVLIATDV-I-----ARGMDFKG 228 (248)
Q Consensus 160 ~~~~liF~~~~~~~~~l~~~L~~~-----~~~v~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~-~-----~~Gidip~ 228 (248)
+.+++|.++++.-++++++.+++. +.++..++|+.+....... +.++..+|+|+|.- + ...+++..
T Consensus 76 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~iiv~T~~~l~~~~~~~~~~~~~ 152 (391)
T 1xti_A 76 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV---LKKNCPHIVVGTPGRILALARNKSLNLKH 152 (391)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHH---HHHSCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHH---HhcCCCCEEEECHHHHHHHHHcCCccccc
Confidence 458999999999999988877653 6889999999887665443 44566789999953 2 23456777
Q ss_pred CcEEE
Q 042003 229 VNCVI 233 (248)
Q Consensus 229 ~~~Vi 233 (248)
+++||
T Consensus 153 ~~~vV 157 (391)
T 1xti_A 153 IKHFI 157 (391)
T ss_dssp CSEEE
T ss_pred cCEEE
Confidence 77776
No 113
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=91.52 E-value=0.74 Score=34.72 Aligned_cols=70 Identities=17% Similarity=0.212 Sum_probs=49.8
Q ss_pred CCCEEEEecchHHHHHHHHHhhcC----CCeeEEEecCCCHHHHHHHHHHhhcCCceEEEEecc-c-----ccCCCCCCC
Q 042003 160 NPPVLIFVQSKERAKELYGELAFD----GIRAGVIHSDLSQTQRENAVDDFRAGKTWVLIATDV-I-----ARGMDFKGV 229 (248)
Q Consensus 160 ~~~~liF~~~~~~~~~l~~~L~~~----~~~v~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~-~-----~~Gidip~~ 229 (248)
+.+++|.+++++-+.++++.+++. +..+..++|+.+.......+ .+..+|+|+|.. + ...+++..+
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 175 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREV----QMGCHLLVATPGRLVDFIEKNKISLEFC 175 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHH----SSCCSEEEECHHHHHHHHHTTSBCCTTC
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh----CCCCCEEEECHHHHHHHHHcCCCChhhC
Confidence 358999999999999988887653 56788889988765443322 245689999963 2 223567777
Q ss_pred cEEE
Q 042003 230 NCVI 233 (248)
Q Consensus 230 ~~Vi 233 (248)
+++|
T Consensus 176 ~~lV 179 (253)
T 1wrb_A 176 KYIV 179 (253)
T ss_dssp CEEE
T ss_pred CEEE
Confidence 7776
No 114
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=89.35 E-value=2.6 Score=27.03 Aligned_cols=43 Identities=26% Similarity=0.501 Sum_probs=20.7
Q ss_pred EEEecchHHHHHHHHHhhcCCCeeEEEecCCCHHHHHHHHHHh
Q 042003 164 LIFVQSKERAKELYGELAFDGIRAGVIHSDLSQTQRENAVDDF 206 (248)
Q Consensus 164 liF~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~r~~~~~~f 206 (248)
++|.+..+-...+...++..|..+..+.++...+.|.+-++.|
T Consensus 6 vvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleef 48 (162)
T 2l82_A 6 VVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEF 48 (162)
T ss_dssp EEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHH
T ss_pred EEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHH
Confidence 3444444444444445555555555555554444444444444
No 115
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=89.25 E-value=2.1 Score=34.31 Aligned_cols=69 Identities=13% Similarity=0.167 Sum_probs=50.2
Q ss_pred CCCEEEEecchHHHHHHHHHhhc----CCCeeEEEecCCCHHHHHHHHHHhhcCCceEEEEeccc------ccCCCCCCC
Q 042003 160 NPPVLIFVQSKERAKELYGELAF----DGIRAGVIHSDLSQTQRENAVDDFRAGKTWVLIATDVI------ARGMDFKGV 229 (248)
Q Consensus 160 ~~~~liF~~~~~~~~~l~~~L~~----~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~------~~Gidip~~ 229 (248)
+.+++|.++++.-+.++++.+++ .+..+..++|+.+..+....+. ..+|+|+|.-. ...++...+
T Consensus 89 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~i~v~T~~~l~~~~~~~~~~~~~~ 163 (394)
T 1fuu_A 89 APQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-----DAQIVVGTPGRVFDNIQRRRFRTDKI 163 (394)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSSCCTTC
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-----CCCEEEECHHHHHHHHHhCCcchhhC
Confidence 56999999999999988887754 3678999999998766555443 35799999431 223455667
Q ss_pred cEEE
Q 042003 230 NCVI 233 (248)
Q Consensus 230 ~~Vi 233 (248)
++||
T Consensus 164 ~~vI 167 (394)
T 1fuu_A 164 KMFI 167 (394)
T ss_dssp CEEE
T ss_pred cEEE
Confidence 7666
No 116
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=89.03 E-value=0.3 Score=31.71 Aligned_cols=36 Identities=8% Similarity=0.084 Sum_probs=32.4
Q ss_pred CCCEEEEecchHHHHHHHHHhhcCCCeeEEEecCCC
Q 042003 160 NPPVLIFVQSKERAKELYGELAFDGIRAGVIHSDLS 195 (248)
Q Consensus 160 ~~~~liF~~~~~~~~~l~~~L~~~~~~v~~~~~~~~ 195 (248)
++++++||.+-..+...+..|+..|+++..+.||+.
T Consensus 55 ~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~ 90 (108)
T 3gk5_A 55 DKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQ 90 (108)
T ss_dssp TSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHH
T ss_pred CCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHH
Confidence 578999999988899999999999999999999854
No 117
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=88.90 E-value=0.61 Score=43.26 Aligned_cols=72 Identities=11% Similarity=0.225 Sum_probs=55.9
Q ss_pred CCCEEEEecchHHHHHHHHHhhcC----CC----eeEEEecCCCHHHHHHHHHHhhcCCceEEEEecc-cccCCC-CCCC
Q 042003 160 NPPVLIFVQSKERAKELYGELAFD----GI----RAGVIHSDLSQTQRENAVDDFRAGKTWVLIATDV-IARGMD-FKGV 229 (248)
Q Consensus 160 ~~~~liF~~~~~~~~~l~~~L~~~----~~----~v~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~-~~~Gid-ip~~ 229 (248)
+.+++|.++++.-+.++++.++.. +. .+..++|+.+..++.+..+.+.+ .+|+|+|.. +..-+. +..+
T Consensus 99 ~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP~~L~~~l~~L~~l 176 (1054)
T 1gku_B 99 GKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTTQFLSKHYRELGHF 176 (1054)
T ss_dssp SCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEHHHHHHCSTTSCCC
T ss_pred CCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcHHHHHHHHHHhccC
Confidence 579999999999999988888643 55 78999999999888888888877 889999963 222121 5567
Q ss_pred cEEE
Q 042003 230 NCVI 233 (248)
Q Consensus 230 ~~Vi 233 (248)
++||
T Consensus 177 ~~lV 180 (1054)
T 1gku_B 177 DFIF 180 (1054)
T ss_dssp SEEE
T ss_pred CEEE
Confidence 7766
No 118
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=88.78 E-value=2.3 Score=34.38 Aligned_cols=69 Identities=17% Similarity=0.251 Sum_probs=50.0
Q ss_pred CCEEEEecchHHHHHHHHHhhc----CCCeeEEEecCCCHHHHHHHHHHhhcCCceEEEEecc-----cc-cCCCCCCCc
Q 042003 161 PPVLIFVQSKERAKELYGELAF----DGIRAGVIHSDLSQTQRENAVDDFRAGKTWVLIATDV-----IA-RGMDFKGVN 230 (248)
Q Consensus 161 ~~~liF~~~~~~~~~l~~~L~~----~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~-----~~-~Gidip~~~ 230 (248)
.+++|.++++.-+.++++.+++ .+..+..++|+.+..+....+ . ...+|+|+|.- +. ..+++..++
T Consensus 102 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~-~~~~I~v~Tp~~l~~~l~~~~~~~~~~~ 177 (417)
T 2i4i_A 102 PISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDL---E-RGCHLLVATPGRLVDMMERGKIGLDFCK 177 (417)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHH---T-TCCSEEEECHHHHHHHHHTTSBCCTTCC
T ss_pred ccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHh---h-CCCCEEEEChHHHHHHHHcCCcChhhCc
Confidence 5799999999999999888865 367889999998876544322 2 34689999962 11 235667777
Q ss_pred EEE
Q 042003 231 CVI 233 (248)
Q Consensus 231 ~Vi 233 (248)
+||
T Consensus 178 ~iV 180 (417)
T 2i4i_A 178 YLV 180 (417)
T ss_dssp EEE
T ss_pred EEE
Confidence 776
No 119
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=88.65 E-value=2.1 Score=35.21 Aligned_cols=70 Identities=20% Similarity=0.308 Sum_probs=51.2
Q ss_pred CCCEEEEecchHHHHHHHHHhhcC----CCeeEEEecCCCHHHHHHHHHHhhcCCceEEEEecc-----cc-cCCCCCCC
Q 042003 160 NPPVLIFVQSKERAKELYGELAFD----GIRAGVIHSDLSQTQRENAVDDFRAGKTWVLIATDV-----IA-RGMDFKGV 229 (248)
Q Consensus 160 ~~~~liF~~~~~~~~~l~~~L~~~----~~~v~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~-----~~-~Gidip~~ 229 (248)
+.+++|.+++++-+.++++.+++. +.++..++|+.+...+...+ . ...+|+|+|.- +. ..+++..+
T Consensus 129 ~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l---~-~~~~Ivv~Tp~~l~~~l~~~~~~l~~~ 204 (434)
T 2db3_A 129 RPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECI---T-RGCHVVIATPGRLLDFVDRTFITFEDT 204 (434)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHH---T-TCCSEEEECHHHHHHHHHTTSCCCTTC
T ss_pred CccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHh---h-cCCCEEEEChHHHHHHHHhCCcccccC
Confidence 458999999999999998888753 56788999998876544333 2 35689999953 22 23567778
Q ss_pred cEEE
Q 042003 230 NCVI 233 (248)
Q Consensus 230 ~~Vi 233 (248)
+++|
T Consensus 205 ~~lV 208 (434)
T 2db3_A 205 RFVV 208 (434)
T ss_dssp CEEE
T ss_pred CeEE
Confidence 8776
No 120
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=88.65 E-value=2.9 Score=34.32 Aligned_cols=70 Identities=16% Similarity=0.214 Sum_probs=52.1
Q ss_pred CCCCEEEEecchHHHHHHHHHhhcC-CC---eeEEEecCCCHHHHHHHHHHhhcCCceEEEEecc-cc-----cCCCCCC
Q 042003 159 LNPPVLIFVQSKERAKELYGELAFD-GI---RAGVIHSDLSQTQRENAVDDFRAGKTWVLIATDV-IA-----RGMDFKG 228 (248)
Q Consensus 159 ~~~~~liF~~~~~~~~~l~~~L~~~-~~---~v~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~-~~-----~Gidip~ 228 (248)
.+.+++|.++++.-+.++++.+++. +. .+..+||+.+..++..... ..+|+|+|.- +. ..++...
T Consensus 51 ~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~-----~~~ivv~T~~~l~~~~~~~~~~~~~ 125 (494)
T 1wp9_A 51 YGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWA-----RAKVIVATPQTIENDLLAGRISLED 125 (494)
T ss_dssp SCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSCCTTS
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhhhhhhcc-----CCCEEEecHHHHHHHHhcCCcchhh
Confidence 4689999999999999888888765 44 8999999998877655443 3579999953 21 2355667
Q ss_pred CcEEE
Q 042003 229 VNCVI 233 (248)
Q Consensus 229 ~~~Vi 233 (248)
.++||
T Consensus 126 ~~~vI 130 (494)
T 1wp9_A 126 VSLIV 130 (494)
T ss_dssp CSEEE
T ss_pred ceEEE
Confidence 77776
No 121
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=88.65 E-value=2 Score=34.58 Aligned_cols=70 Identities=17% Similarity=0.111 Sum_probs=50.0
Q ss_pred CCCEEEEecchHHHHHHHHHhhcC----CCeeEEEecCCCHHHHHHHHHHhhcCCceEEEEecc-----c-ccCCCCCCC
Q 042003 160 NPPVLIFVQSKERAKELYGELAFD----GIRAGVIHSDLSQTQRENAVDDFRAGKTWVLIATDV-----I-ARGMDFKGV 229 (248)
Q Consensus 160 ~~~~liF~~~~~~~~~l~~~L~~~----~~~v~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~-----~-~~Gidip~~ 229 (248)
+.+++|.++++.-+.++++.++.. +..+..++|+.+....... ..+..+|+|+|.- + ....++.++
T Consensus 89 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~ 164 (400)
T 1s2m_A 89 KIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILR----LNETVHILVGTPGRVLDLASRKVADLSDC 164 (400)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHH----TTSCCSEEEECHHHHHHHHHTTCSCCTTC
T ss_pred CccEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHH----hcCCCCEEEEchHHHHHHHHhCCcccccC
Confidence 568999999999998888877653 6788899998876543222 2356689999952 2 233567777
Q ss_pred cEEE
Q 042003 230 NCVI 233 (248)
Q Consensus 230 ~~Vi 233 (248)
++||
T Consensus 165 ~~vI 168 (400)
T 1s2m_A 165 SLFI 168 (400)
T ss_dssp CEEE
T ss_pred CEEE
Confidence 7776
No 122
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=88.34 E-value=0.5 Score=36.95 Aligned_cols=68 Identities=12% Similarity=0.029 Sum_probs=47.8
Q ss_pred CCCEEEEecchHHHHHHHHHhhcC-----CCeeEEEecCCCHHHHHHHHHHhhcCCceEEEEeccc------c-cCCCCC
Q 042003 160 NPPVLIFVQSKERAKELYGELAFD-----GIRAGVIHSDLSQTQRENAVDDFRAGKTWVLIATDVI------A-RGMDFK 227 (248)
Q Consensus 160 ~~~~liF~~~~~~~~~l~~~L~~~-----~~~v~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~------~-~Gidip 227 (248)
+.+++|.+++++-|.++++.++.. +..+....|+.+..... ....+|+|+|..- . ..+++.
T Consensus 162 ~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~~IlV~TP~~l~~~l~~~~~~~l~ 234 (300)
T 3fmo_B 162 YPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ-------KISEQIVIGTPGTVLDWCSKLKFIDPK 234 (300)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC-------CCCCSEEEECHHHHHHHHTTTCCCCGG
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh-------cCCCCEEEECHHHHHHHHHhcCCCChh
Confidence 347999999999999988777653 46777888776543211 3456799999642 1 356778
Q ss_pred CCcEEEe
Q 042003 228 GVNCVIN 234 (248)
Q Consensus 228 ~~~~Vi~ 234 (248)
.++++|.
T Consensus 235 ~l~~lVl 241 (300)
T 3fmo_B 235 KIKVFVL 241 (300)
T ss_dssp GCSEEEE
T ss_pred hceEEEE
Confidence 8888773
No 123
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=88.09 E-value=3.8 Score=32.31 Aligned_cols=71 Identities=14% Similarity=0.185 Sum_probs=50.6
Q ss_pred cCCCCEEEEecchHHHHHHHHHhhc----CCCeeEEEecCCCHHHHHHHHHHhhcCCceEEEEeccc------ccCCCCC
Q 042003 158 SLNPPVLIFVQSKERAKELYGELAF----DGIRAGVIHSDLSQTQRENAVDDFRAGKTWVLIATDVI------ARGMDFK 227 (248)
Q Consensus 158 ~~~~~~liF~~~~~~~~~l~~~L~~----~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~------~~Gidip 227 (248)
..+.+++|.++++.-+.++++.+++ .+..+..++|+.+.......+. ..+|+|+|... ...+++.
T Consensus 72 ~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-----~~~iiv~T~~~l~~~~~~~~~~~~ 146 (367)
T 1hv8_A 72 NNGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-----NANIVVGTPGRILDHINRGTLNLK 146 (367)
T ss_dssp SSSCCEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-----TCSEEEECHHHHHHHHHTTCSCTT
T ss_pred cCCCcEEEEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC-----CCCEEEecHHHHHHHHHcCCcccc
Confidence 3467999999999999988888865 3678888999887665444333 46799999531 1235566
Q ss_pred CCcEEE
Q 042003 228 GVNCVI 233 (248)
Q Consensus 228 ~~~~Vi 233 (248)
..++||
T Consensus 147 ~~~~iI 152 (367)
T 1hv8_A 147 NVKYFI 152 (367)
T ss_dssp SCCEEE
T ss_pred cCCEEE
Confidence 777766
No 124
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=88.04 E-value=0.33 Score=30.97 Aligned_cols=36 Identities=17% Similarity=0.278 Sum_probs=32.0
Q ss_pred CCCEEEEecchHHHHHHHHHhhcCCCeeEEEecCCC
Q 042003 160 NPPVLIFVQSKERAKELYGELAFDGIRAGVIHSDLS 195 (248)
Q Consensus 160 ~~~~liF~~~~~~~~~l~~~L~~~~~~v~~~~~~~~ 195 (248)
++++++||.+-..+...+..|+..|+++..+.||+.
T Consensus 56 ~~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (100)
T 3foj_A 56 NETYYIICKAGGRSAQVVQYLEQNGVNAVNVEGGMD 91 (100)
T ss_dssp TSEEEEECSSSHHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCcEEEEcCCCchHHHHHHHHHHCCCCEEEecccHH
Confidence 578999999999999999999999999999988854
No 125
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=87.69 E-value=0.39 Score=30.20 Aligned_cols=35 Identities=17% Similarity=0.171 Sum_probs=31.0
Q ss_pred CCEEEEecchHHHHHHHHHhhcCCCeeEEEecCCC
Q 042003 161 PPVLIFVQSKERAKELYGELAFDGIRAGVIHSDLS 195 (248)
Q Consensus 161 ~~~liF~~~~~~~~~l~~~L~~~~~~v~~~~~~~~ 195 (248)
+++++||.+-..+...+..|+..|+.+..+.||+.
T Consensus 54 ~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 88 (94)
T 1wv9_A 54 RPLLLVCEKGLLSQVAALYLEAEGYEAMSLEGGLQ 88 (94)
T ss_dssp SCEEEECSSSHHHHHHHHHHHHHTCCEEEETTGGG
T ss_pred CCEEEEcCCCChHHHHHHHHHHcCCcEEEEcccHH
Confidence 78999999988899999999999988888888864
No 126
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=87.42 E-value=2.5 Score=34.14 Aligned_cols=70 Identities=14% Similarity=0.202 Sum_probs=50.7
Q ss_pred CCCEEEEecchHHHHHHHHHhhcC----CCeeEEEecCCCHHHHHHHHHHhhcCCceEEEEec-----ccc-cCCCCCCC
Q 042003 160 NPPVLIFVQSKERAKELYGELAFD----GIRAGVIHSDLSQTQRENAVDDFRAGKTWVLIATD-----VIA-RGMDFKGV 229 (248)
Q Consensus 160 ~~~~liF~~~~~~~~~l~~~L~~~----~~~v~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~-----~~~-~Gidip~~ 229 (248)
+.+++|.++++.-+.++++.+++. +..+..++|+.+..+....+. . ..+|+|+|. .+. ..++...+
T Consensus 105 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~-~~~ivv~Tp~~l~~~l~~~~~~~~~~ 180 (410)
T 2j0s_A 105 ETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLD---Y-GQHVVAGTPGRVFDMIRRRSLRTRAI 180 (410)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHH---H-CCSEEEECHHHHHHHHHTTSSCCTTC
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhh---c-CCCEEEcCHHHHHHHHHhCCccHhhe
Confidence 579999999999999998888653 567888999988766544333 2 347999995 222 34566677
Q ss_pred cEEE
Q 042003 230 NCVI 233 (248)
Q Consensus 230 ~~Vi 233 (248)
++||
T Consensus 181 ~~vV 184 (410)
T 2j0s_A 181 KMLV 184 (410)
T ss_dssp CEEE
T ss_pred eEEE
Confidence 7776
No 127
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=87.21 E-value=0.94 Score=38.29 Aligned_cols=70 Identities=14% Similarity=0.135 Sum_probs=49.0
Q ss_pred CCCEEEEecchHHHHHHHHHhhcC----CCeeEEEecCCCHHHHHHHHHHhhcCCceEEEEeccc-----ccC-C-CCCC
Q 042003 160 NPPVLIFVQSKERAKELYGELAFD----GIRAGVIHSDLSQTQRENAVDDFRAGKTWVLIATDVI-----ARG-M-DFKG 228 (248)
Q Consensus 160 ~~~~liF~~~~~~~~~l~~~L~~~----~~~v~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~-----~~G-i-dip~ 228 (248)
+.+++|.++++.-+.++++.+++. +..+..++|+.+...+...+. +..+|+|+|.-. ..+ + ++.+
T Consensus 52 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 127 (555)
T 3tbk_A 52 KGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHII----EDNDIIILTPQILVNNLNNGAIPSLSV 127 (555)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSCHHHHH----HHCSEEEECHHHHHHHHHTSSSCCGGG
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhhHHHHh----cCCCEEEECHHHHHHHHhcCccccccc
Confidence 678999999999998888888764 889999999987654432221 136799999532 222 2 4556
Q ss_pred CcEEE
Q 042003 229 VNCVI 233 (248)
Q Consensus 229 ~~~Vi 233 (248)
+++||
T Consensus 128 ~~~vV 132 (555)
T 3tbk_A 128 FTLMI 132 (555)
T ss_dssp CSEEE
T ss_pred CCEEE
Confidence 67666
No 128
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=87.10 E-value=0.32 Score=31.18 Aligned_cols=36 Identities=19% Similarity=0.209 Sum_probs=31.8
Q ss_pred CCCEEEEecchHHHHHHHHHhhcCCCeeEEEecCCC
Q 042003 160 NPPVLIFVQSKERAKELYGELAFDGIRAGVIHSDLS 195 (248)
Q Consensus 160 ~~~~liF~~~~~~~~~l~~~L~~~~~~v~~~~~~~~ 195 (248)
++++++||.+-..+...+..|+..|+++..+.||+.
T Consensus 56 ~~~iv~yC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (103)
T 3eme_A 56 NEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGMH 91 (103)
T ss_dssp TSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCeEEEECCCChHHHHHHHHHHHCCCCeEEeCCCHH
Confidence 568999999988899999999999999999988853
No 129
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=87.00 E-value=1.6 Score=39.15 Aligned_cols=70 Identities=10% Similarity=0.107 Sum_probs=46.4
Q ss_pred CCCEEEEecchHHHHHHHHHhhcC----CCeeEEEecCCCHHHHHHHHHHhhcCCceEEEEecc-c----ccC-C-CCCC
Q 042003 160 NPPVLIFVQSKERAKELYGELAFD----GIRAGVIHSDLSQTQRENAVDDFRAGKTWVLIATDV-I----ARG-M-DFKG 228 (248)
Q Consensus 160 ~~~~liF~~~~~~~~~l~~~L~~~----~~~v~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~-~----~~G-i-dip~ 228 (248)
++++||.++++.-+.++++.+++. +.++..+||+.+...+...+. +..+|+|+|.- + ..+ + .+.+
T Consensus 296 ~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 371 (797)
T 4a2q_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 371 (797)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHH----HTCSEEEECHHHHHHHHHSSSCCCGGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHhh----CCCCEEEEchHHHHHHHHhcccccccc
Confidence 679999999999999888887664 889999999987655433222 24679999953 1 222 2 4556
Q ss_pred CcEEE
Q 042003 229 VNCVI 233 (248)
Q Consensus 229 ~~~Vi 233 (248)
+++||
T Consensus 372 ~~~iV 376 (797)
T 4a2q_A 372 FTLMI 376 (797)
T ss_dssp CSEEE
T ss_pred CCEEE
Confidence 67766
No 130
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=86.84 E-value=0.5 Score=34.80 Aligned_cols=70 Identities=16% Similarity=0.208 Sum_probs=47.2
Q ss_pred CCCEEEEecchHHHHHHHHHhhcC--------CCeeEEEecCCCHHHHHHHHHHhhcCCceEEEEecc-----cc-cCCC
Q 042003 160 NPPVLIFVQSKERAKELYGELAFD--------GIRAGVIHSDLSQTQRENAVDDFRAGKTWVLIATDV-----IA-RGMD 225 (248)
Q Consensus 160 ~~~~liF~~~~~~~~~l~~~L~~~--------~~~v~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~-----~~-~Gid 225 (248)
+.+++|.++++.-+.++++.+++. +..+..++|+.+..... +.+ .+..+|+|+|.. +. ..++
T Consensus 72 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~-~~~~~Iiv~Tp~~l~~~l~~~~~~ 147 (219)
T 1q0u_A 72 EVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKAL---EKL-NVQPHIVIGTPGRINDFIREQALD 147 (219)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTT---CCC-SSCCSEEEECHHHHHHHHHTTCCC
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHH---HHc-CCCCCEEEeCHHHHHHHHHcCCCC
Confidence 568999999999999988877543 57788889886543321 112 235689999952 22 2355
Q ss_pred CCCCcEEE
Q 042003 226 FKGVNCVI 233 (248)
Q Consensus 226 ip~~~~Vi 233 (248)
+..++++|
T Consensus 148 ~~~~~~lV 155 (219)
T 1q0u_A 148 VHTAHILV 155 (219)
T ss_dssp GGGCCEEE
T ss_pred cCcceEEE
Confidence 66677665
No 131
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=86.75 E-value=1.2 Score=37.72 Aligned_cols=71 Identities=11% Similarity=0.097 Sum_probs=47.1
Q ss_pred CCCEEEEecchHHHHHHHHHhhcC----CCeeEEEecCCCHHHHHHHHHHhhcCCceEEEEeccc-----ccC-C-CCCC
Q 042003 160 NPPVLIFVQSKERAKELYGELAFD----GIRAGVIHSDLSQTQRENAVDDFRAGKTWVLIATDVI-----ARG-M-DFKG 228 (248)
Q Consensus 160 ~~~~liF~~~~~~~~~l~~~L~~~----~~~v~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~-----~~G-i-dip~ 228 (248)
+.+++|.++++.-+.++++.+++. +..+..++|+.+...+...+. +..+|+|+|.-. ..| + ++..
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 130 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHH----HHCSEEEECHHHHHHHHHSSSCCCSTT
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhh----CCCCEEEECHHHHHHHHHhCccccccc
Confidence 578999999999999888888764 889999999987655433222 136799999532 222 3 5667
Q ss_pred CcEEEe
Q 042003 229 VNCVIN 234 (248)
Q Consensus 229 ~~~Vi~ 234 (248)
+++||.
T Consensus 131 ~~~vVi 136 (556)
T 4a2p_A 131 FTLMIF 136 (556)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 777763
No 132
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=86.68 E-value=0.6 Score=35.03 Aligned_cols=72 Identities=22% Similarity=0.286 Sum_probs=48.3
Q ss_pred CCCEEEEecchHHHHHHHHHhhcC----CCeeEEEecCCCHHHHHHHHHHhhcCCceEEEEecc-----ccc---CCCCC
Q 042003 160 NPPVLIFVQSKERAKELYGELAFD----GIRAGVIHSDLSQTQRENAVDDFRAGKTWVLIATDV-----IAR---GMDFK 227 (248)
Q Consensus 160 ~~~~liF~~~~~~~~~l~~~L~~~----~~~v~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~-----~~~---Gidip 227 (248)
+.+++|.++++.-+.++++.+++. +..+..++|+..... .......+..+|+|+|.- +.. ++++.
T Consensus 98 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~ 174 (245)
T 3dkp_A 98 GFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAK---KFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLA 174 (245)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHT---TTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHH---HhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccc
Confidence 458999999999999998888764 566777776532211 112223556789999942 112 47788
Q ss_pred CCcEEEe
Q 042003 228 GVNCVIN 234 (248)
Q Consensus 228 ~~~~Vi~ 234 (248)
+++++|.
T Consensus 175 ~~~~lVi 181 (245)
T 3dkp_A 175 SVEWLVV 181 (245)
T ss_dssp TCCEEEE
T ss_pred cCcEEEE
Confidence 8888763
No 133
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=85.68 E-value=2.5 Score=37.96 Aligned_cols=72 Identities=11% Similarity=0.109 Sum_probs=53.5
Q ss_pred hccCCCCEEEEecchHHHHHHHHHhhc----CCCeeEEEecCCCHHHHHHHHHHhhcCCceEEEEecc-c-----c----
Q 042003 156 AESLNPPVLIFVQSKERAKELYGELAF----DGIRAGVIHSDLSQTQRENAVDDFRAGKTWVLIATDV-I-----A---- 221 (248)
Q Consensus 156 ~~~~~~~~liF~~~~~~~~~l~~~L~~----~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~-~-----~---- 221 (248)
+...+..++|.++|+.-|.+.++.+.. .|.++..+.|+++..+|.... ..+|+++|+. + .
T Consensus 120 ~aL~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~gg~~~~~r~~~~------~~dIv~gTpgrlgfD~L~D~m~ 193 (844)
T 1tf5_A 120 NALTGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKREAY------AADITYSTNNELGFDYLRDNMV 193 (844)
T ss_dssp HHTTSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTTC
T ss_pred HHHcCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECchhhhHHHHHHhhh
Confidence 444467899999999999888777754 588999999999987766543 2689999962 2 1
Q ss_pred ---cCCCCCCCcEEE
Q 042003 222 ---RGMDFKGVNCVI 233 (248)
Q Consensus 222 ---~Gidip~~~~Vi 233 (248)
..++...++++|
T Consensus 194 ~~~~~l~lr~~~~lV 208 (844)
T 1tf5_A 194 LYKEQMVQRPLHFAV 208 (844)
T ss_dssp SSGGGCCCCCCCEEE
T ss_pred cchhhhcccCCCEEE
Confidence 235667777776
No 134
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=85.49 E-value=2.2 Score=38.22 Aligned_cols=70 Identities=9% Similarity=0.003 Sum_probs=51.7
Q ss_pred cCCCCEEEEecchHHHHHHHHHhhc----CCCeeEEEecCCCHHHHHHHHHHhhcCCceEEEEeccc------ccC----
Q 042003 158 SLNPPVLIFVQSKERAKELYGELAF----DGIRAGVIHSDLSQTQRENAVDDFRAGKTWVLIATDVI------ARG---- 223 (248)
Q Consensus 158 ~~~~~~liF~~~~~~~~~l~~~L~~----~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~------~~G---- 223 (248)
..+..++|.++|+.-|.+.++.+.. .+.++..+.|+++...|.... ..+|+|+|+.- ..+
T Consensus 113 l~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~~r~~~~------~~dIvvgTpgrl~fDyLrd~~~~~ 186 (853)
T 2fsf_A 113 LTGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAY------AADITYGTNNEYGFDYLRDNMAFS 186 (853)
T ss_dssp TTSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTTCSS
T ss_pred HcCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECCchhhHHHHHhhhhcc
Confidence 3467899999999999888777654 588999999999987665443 26899999732 122
Q ss_pred ---CCCCCCcEEE
Q 042003 224 ---MDFKGVNCVI 233 (248)
Q Consensus 224 ---idip~~~~Vi 233 (248)
++...++++|
T Consensus 187 ~~~~~~~~l~~lV 199 (853)
T 2fsf_A 187 PEERVQRKLHYAL 199 (853)
T ss_dssp GGGCCCCSCCEEE
T ss_pred HhHhcccCCcEEE
Confidence 4556677665
No 135
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=84.71 E-value=0.62 Score=30.02 Aligned_cols=36 Identities=11% Similarity=0.249 Sum_probs=31.3
Q ss_pred CCCEEEEecchHHHHHHHHHhhcCCCe-eEEEecCCC
Q 042003 160 NPPVLIFVQSKERAKELYGELAFDGIR-AGVIHSDLS 195 (248)
Q Consensus 160 ~~~~liF~~~~~~~~~l~~~L~~~~~~-v~~~~~~~~ 195 (248)
.+++++||.+-..+...+..|+..|+. +..+.||+.
T Consensus 52 ~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 88 (106)
T 3hix_A 52 SRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLA 88 (106)
T ss_dssp TSCEEEECSSHHHHHHHHHHHHHTTCSCEEECTTHHH
T ss_pred CCeEEEEECCCChHHHHHHHHHHcCCcCEEEecCCHH
Confidence 578999999988899999999999984 888888854
No 136
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=84.27 E-value=4.6 Score=32.56 Aligned_cols=72 Identities=11% Similarity=0.152 Sum_probs=50.9
Q ss_pred CCCCEEEEecchHHHHHHHHHhhcC----CCeeEEEecCCCHHHHHHHHHHhhcCCceEEEEecc-----c-ccCCCCCC
Q 042003 159 LNPPVLIFVQSKERAKELYGELAFD----GIRAGVIHSDLSQTQRENAVDDFRAGKTWVLIATDV-----I-ARGMDFKG 228 (248)
Q Consensus 159 ~~~~~liF~~~~~~~~~l~~~L~~~----~~~v~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~-----~-~~Gidip~ 228 (248)
.+.+++|.++++.-+.++++.+++. +..+...+|+.+.... .+.+..+..+|+|+|.- + ...++...
T Consensus 107 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~ 183 (414)
T 3eiq_A 107 KATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAE---VQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKY 183 (414)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHH---HHHHTTTCCSEEEECHHHHHHHHHHTSSCSTT
T ss_pred CceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHH---HHHHhcCCCCEEEECHHHHHHHHHcCCccccc
Confidence 3578999999999999888888653 5677777887665433 44555677899999952 2 23345666
Q ss_pred CcEEE
Q 042003 229 VNCVI 233 (248)
Q Consensus 229 ~~~Vi 233 (248)
+++||
T Consensus 184 ~~~vV 188 (414)
T 3eiq_A 184 IKMFV 188 (414)
T ss_dssp CCEEE
T ss_pred CcEEE
Confidence 77665
No 137
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=84.16 E-value=2.9 Score=25.39 Aligned_cols=35 Identities=14% Similarity=0.145 Sum_probs=29.1
Q ss_pred CCCEEEEecchHHHHHHHHHhhcCCCe-eEEEecCCC
Q 042003 160 NPPVLIFVQSKERAKELYGELAFDGIR-AGVIHSDLS 195 (248)
Q Consensus 160 ~~~~liF~~~~~~~~~l~~~L~~~~~~-v~~~~~~~~ 195 (248)
++++++||.+-..+...+..|++.|+. +..+ |++.
T Consensus 41 ~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l-GG~~ 76 (85)
T 2jtq_A 41 NDTVKVYCNAGRQSGQAKEILSEMGYTHVENA-GGLK 76 (85)
T ss_dssp TSEEEEEESSSHHHHHHHHHHHHTTCSSEEEE-EETT
T ss_pred CCcEEEEcCCCchHHHHHHHHHHcCCCCEEec-cCHH
Confidence 578999999988899999999999884 6666 7754
No 138
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=84.15 E-value=0.55 Score=30.24 Aligned_cols=35 Identities=20% Similarity=0.217 Sum_probs=30.6
Q ss_pred CCCEEEEecchHHHHHHHHHhhcCCCeeEEEecCC
Q 042003 160 NPPVLIFVQSKERAKELYGELAFDGIRAGVIHSDL 194 (248)
Q Consensus 160 ~~~~liF~~~~~~~~~l~~~L~~~~~~v~~~~~~~ 194 (248)
++++++||.+-..+...+..|++.|+.+..+.||+
T Consensus 56 ~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~l~GG~ 90 (103)
T 3iwh_A 56 NEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGM 90 (103)
T ss_dssp TSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHH
T ss_pred CCeEEEECCCCHHHHHHHHHHHHcCCCEEEecChH
Confidence 56899999998888999999999999888888875
No 139
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=84.05 E-value=3.4 Score=37.38 Aligned_cols=73 Identities=18% Similarity=0.155 Sum_probs=53.8
Q ss_pred HhccCCCCEEEEecchHHHHHHHHHhhc----CCCeeEEEecCCCHHHHHHHHHHhhcCCceEEEEecc-c-----c---
Q 042003 155 FAESLNPPVLIFVQSKERAKELYGELAF----DGIRAGVIHSDLSQTQRENAVDDFRAGKTWVLIATDV-I-----A--- 221 (248)
Q Consensus 155 ~~~~~~~~~liF~~~~~~~~~l~~~L~~----~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~-~-----~--- 221 (248)
++...+..++|.++|+.-|.+.++.+.. .|.++..+.|+++..+|..... .+|+++|+. + .
T Consensus 147 l~aL~g~~v~VvTpTreLA~Qdae~m~~l~~~lGLsv~~i~gg~~~~~r~~~y~------~DIvygTpgrlgfDyLrD~m 220 (922)
T 1nkt_A 147 LNALAGNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQVGVILATMTPDERRVAYN------ADITYGTNNEFGFDYLRDNM 220 (922)
T ss_dssp HHHTTTSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHHH------SSEEEEEHHHHHHHHHHHTT
T ss_pred HHHHhCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhcC------CCEEEECchHhhHHHHHhhh
Confidence 3444467899999999988887777653 5899999999999877765542 689999963 2 1
Q ss_pred ----cCCCCCCCcEEE
Q 042003 222 ----RGMDFKGVNCVI 233 (248)
Q Consensus 222 ----~Gidip~~~~Vi 233 (248)
..++...++++|
T Consensus 221 ~~~~~~l~lr~l~~lI 236 (922)
T 1nkt_A 221 AHSLDDLVQRGHHYAI 236 (922)
T ss_dssp CSSGGGCCCCCCCEEE
T ss_pred hccHhhhccCCCCEEE
Confidence 135666777766
No 140
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=83.50 E-value=2.6 Score=38.21 Aligned_cols=59 Identities=17% Similarity=0.091 Sum_probs=46.5
Q ss_pred HhccCCCCEEEEecchHHHHHHHHHhh----cCCCeeEEEecCCCHHHHHHHHHHhhcCCceEEEEecc
Q 042003 155 FAESLNPPVLIFVQSKERAKELYGELA----FDGIRAGVIHSDLSQTQRENAVDDFRAGKTWVLIATDV 219 (248)
Q Consensus 155 ~~~~~~~~~liF~~~~~~~~~l~~~L~----~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~ 219 (248)
+....+..++|.++|..-|.+.++.+. ..|.++..+.|+++..+|.... ..+|+++|+.
T Consensus 115 L~aL~G~qv~VvTPTreLA~Qdae~m~~l~~~lGLsv~~i~Gg~~~~~r~~ay------~~DIvyGTpg 177 (997)
T 2ipc_A 115 LNALTGKGVHVVTVNDYLARRDAEWMGPVYRGLGLSVGVIQHASTPAERRKAY------LADVTYVTNS 177 (997)
T ss_dssp HHHTTCSCCEEEESSHHHHHHHHHHHHHHHHTTTCCEEECCTTCCHHHHHHHH------TSSEEEEEHH
T ss_pred HHHHhCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHc------CCCEEEECch
Confidence 344446789999999998888777665 4589999999999987776654 3689999964
No 141
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=82.98 E-value=9 Score=29.69 Aligned_cols=69 Identities=14% Similarity=0.192 Sum_probs=49.6
Q ss_pred CCCEEEEecchHHHHHHHHHhhc----CCCeeEEEecCCCHHHHHHHHHHhhcCCceEEEEeccc-----c-cCCCCCCC
Q 042003 160 NPPVLIFVQSKERAKELYGELAF----DGIRAGVIHSDLSQTQRENAVDDFRAGKTWVLIATDVI-----A-RGMDFKGV 229 (248)
Q Consensus 160 ~~~~liF~~~~~~~~~l~~~L~~----~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~-----~-~Gidip~~ 229 (248)
+.+++|.++++.-+.++++.+++ .+..+..++|+.+.......+ . ..+|+|+|.-. . ..+++...
T Consensus 56 ~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (337)
T 2z0m_A 56 GMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRV---R--NADIVVATPGRLLDLWSKGVIDLSSF 130 (337)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHHH---T--TCSEEEECHHHHHHHHHTTSCCGGGC
T ss_pred cCCEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEECCcchHHHHhhc---C--CCCEEEECHHHHHHHHHcCCcchhhC
Confidence 67999999999999999888874 357889999998876544332 2 26799999532 1 23455666
Q ss_pred cEEE
Q 042003 230 NCVI 233 (248)
Q Consensus 230 ~~Vi 233 (248)
++||
T Consensus 131 ~~iV 134 (337)
T 2z0m_A 131 EIVI 134 (337)
T ss_dssp SEEE
T ss_pred cEEE
Confidence 6665
No 142
>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A
Probab=82.51 E-value=0.76 Score=31.55 Aligned_cols=36 Identities=11% Similarity=0.180 Sum_probs=31.4
Q ss_pred CCCEEEEecch--HHHHHHHHHhhcCCCeeEEEecCCC
Q 042003 160 NPPVLIFVQSK--ERAKELYGELAFDGIRAGVIHSDLS 195 (248)
Q Consensus 160 ~~~~liF~~~~--~~~~~l~~~L~~~~~~v~~~~~~~~ 195 (248)
++++++||.+- ..+...+..|+..|+++..+.||+.
T Consensus 72 ~~~ivvyC~~g~~~rs~~aa~~L~~~G~~v~~l~GG~~ 109 (144)
T 3nhv_A 72 EKVIITYCWGPACNGATKAAAKFAQLGFRVKELIGGIE 109 (144)
T ss_dssp TSEEEEECSCTTCCHHHHHHHHHHHTTCEEEEEESHHH
T ss_pred CCeEEEEECCCCccHHHHHHHHHHHCCCeEEEeCCcHH
Confidence 56899999987 5888999999999999999999854
No 143
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=82.10 E-value=1.4 Score=29.31 Aligned_cols=35 Identities=11% Similarity=0.212 Sum_probs=30.7
Q ss_pred CCEEEEe-cchHHHHHHHHHhhcCCCeeEEEecCCC
Q 042003 161 PPVLIFV-QSKERAKELYGELAFDGIRAGVIHSDLS 195 (248)
Q Consensus 161 ~~~liF~-~~~~~~~~l~~~L~~~~~~v~~~~~~~~ 195 (248)
+++++|| .+-..+...+..|+..|+++..+.||+.
T Consensus 90 ~~ivvyC~~~G~rs~~a~~~L~~~G~~v~~l~GG~~ 125 (134)
T 3g5j_A 90 DNIVIYCARGGMRSGSIVNLLSSLGVNVYQLEGGYK 125 (134)
T ss_dssp SEEEEECSSSSHHHHHHHHHHHHTTCCCEEETTHHH
T ss_pred CeEEEEECCCChHHHHHHHHHHHcCCceEEEeCcHH
Confidence 7899999 5777888999999999999999999865
No 144
>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori}
Probab=81.91 E-value=1.6 Score=28.27 Aligned_cols=36 Identities=14% Similarity=0.160 Sum_probs=31.3
Q ss_pred CCCEEEEecchHHHHHHHHHhhcCCCeeEEEecCCC
Q 042003 160 NPPVLIFVQSKERAKELYGELAFDGIRAGVIHSDLS 195 (248)
Q Consensus 160 ~~~~liF~~~~~~~~~l~~~L~~~~~~v~~~~~~~~ 195 (248)
++++++||.+-..+...+..|+..|+....+.||+.
T Consensus 56 ~~~ivvyC~~G~rs~~aa~~L~~~G~~~~~l~GG~~ 91 (110)
T 2k0z_A 56 DKKVLLHCRAGRRALDAAKSMHELGYTPYYLEGNVY 91 (110)
T ss_dssp SSCEEEECSSSHHHHHHHHHHHHTTCCCEEEESCGG
T ss_pred CCEEEEEeCCCchHHHHHHHHHHCCCCEEEecCCHH
Confidence 678999999988999999999999985588889865
No 145
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}
Probab=81.76 E-value=1.2 Score=30.64 Aligned_cols=36 Identities=19% Similarity=0.207 Sum_probs=31.2
Q ss_pred CCCEEEEecchHHHHHHHHHhhcCCC-eeEEEecCCC
Q 042003 160 NPPVLIFVQSKERAKELYGELAFDGI-RAGVIHSDLS 195 (248)
Q Consensus 160 ~~~~liF~~~~~~~~~l~~~L~~~~~-~v~~~~~~~~ 195 (248)
++++++||.+-..+...+..|+..|+ ++..+.||+.
T Consensus 80 ~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 116 (148)
T 2fsx_A 80 ERPVIFLCRSGNRSIGAAEVATEAGITPAYNVLDGFE 116 (148)
T ss_dssp -CCEEEECSSSSTHHHHHHHHHHTTCCSEEEETTTTT
T ss_pred CCEEEEEcCCChhHHHHHHHHHHcCCcceEEEcCChh
Confidence 57899999998888899999999998 5999999974
No 146
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=81.06 E-value=1.5 Score=32.05 Aligned_cols=41 Identities=15% Similarity=0.110 Sum_probs=22.9
Q ss_pred eeEEEEeccccccccC-cccccchhHhh---hCCCccceeEEEEee
Q 042003 62 VEYLVLDEADKLFEVG-NLLKHIDPVVK---ACSNPSIVRSLFSAT 103 (248)
Q Consensus 62 ~~~lIiDEah~~~~~~-~~~~~~~~~~~---~~~~~~~~~i~~SAT 103 (248)
-.++||||||.+.... ...... +++. .......++++++-.
T Consensus 88 ~~vliIDEAq~l~~~~~~~~e~~-rll~~l~~~r~~~~~iil~tq~ 132 (199)
T 2r2a_A 88 GSIVIVDEAQDVWPARSAGSKIP-ENVQWLNTHRHQGIDIFVLTQG 132 (199)
T ss_dssp TCEEEETTGGGTSBCCCTTCCCC-HHHHGGGGTTTTTCEEEEEESC
T ss_pred ceEEEEEChhhhccCccccchhH-HHHHHHHhcCcCCeEEEEECCC
Confidence 4589999999985422 112111 2222 223445677777766
No 147
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=80.61 E-value=0.49 Score=31.51 Aligned_cols=36 Identities=14% Similarity=0.081 Sum_probs=30.7
Q ss_pred CCCEEEEecchHH--HHHHHHHhhcCCCeeEEEecCCC
Q 042003 160 NPPVLIFVQSKER--AKELYGELAFDGIRAGVIHSDLS 195 (248)
Q Consensus 160 ~~~~liF~~~~~~--~~~l~~~L~~~~~~v~~~~~~~~ 195 (248)
++++++||.+-.. +...+..|+..|+.+..+.||+.
T Consensus 71 ~~~ivvyC~~g~r~~s~~a~~~L~~~G~~v~~l~GG~~ 108 (124)
T 3flh_A 71 AKTYVVYDWTGGTTLGKTALLVLLSAGFEAYELAGALE 108 (124)
T ss_dssp TSEEEEECSSSSCSHHHHHHHHHHHHTCEEEEETTHHH
T ss_pred CCeEEEEeCCCCchHHHHHHHHHHHcCCeEEEeCCcHH
Confidence 5689999998776 78899999999999888888854
No 148
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=80.57 E-value=9.1 Score=28.47 Aligned_cols=64 Identities=19% Similarity=0.196 Sum_probs=45.8
Q ss_pred cCCchhHHHHHHHHHhccCCCCEEEEecchHHHHHHHHHhhcCCCe-eEEEecCCCHHHHHHHHHHhhcCCceEEEEec
Q 042003 141 AGSEEGKLLALRQSFAESLNPPVLIFVQSKERAKELYGELAFDGIR-AGVIHSDLSQTQRENAVDDFRAGKTWVLIATD 218 (248)
Q Consensus 141 ~~~~~~~~~~l~~~~~~~~~~~~liF~~~~~~~~~l~~~L~~~~~~-v~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~ 218 (248)
.+.-..|.......+... +.++++++++..-++++++.+++.+.. +..++|+... ..+|+|+|.
T Consensus 115 ~~tG~GKT~~a~~~~~~~-~~~~liv~P~~~L~~q~~~~~~~~~~~~v~~~~g~~~~-------------~~~i~v~T~ 179 (237)
T 2fz4_A 115 LPTGSGKTHVAMAAINEL-STPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIKE-------------LKPLTVSTY 179 (237)
T ss_dssp ESSSTTHHHHHHHHHHHS-CSCEEEEESSHHHHHHHHHHHGGGCGGGEEEESSSCBC-------------CCSEEEEEH
T ss_pred eCCCCCHHHHHHHHHHHc-CCCEEEEeCCHHHHHHHHHHHHhCCCCeEEEEeCCCCC-------------cCCEEEEeH
Confidence 333345555544444444 689999999999999999999887877 8888887542 346777773
No 149
>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3
Probab=80.49 E-value=0.93 Score=30.37 Aligned_cols=36 Identities=19% Similarity=0.188 Sum_probs=31.4
Q ss_pred CCCEEEEecchHHHHHHHHHhhcCCCe-eEEEecCCC
Q 042003 160 NPPVLIFVQSKERAKELYGELAFDGIR-AGVIHSDLS 195 (248)
Q Consensus 160 ~~~~liF~~~~~~~~~l~~~L~~~~~~-v~~~~~~~~ 195 (248)
++++++||.+-..+...+..|+..|+. +..+.||+.
T Consensus 82 ~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~ 118 (129)
T 1tq1_A 82 SDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYS 118 (129)
T ss_dssp TSSEEEEESSCSHHHHHHHHHHHHHCCSEEEEECCHH
T ss_pred CCeEEEECCCCcHHHHHHHHHHHcCCCCeEEeCCcHH
Confidence 578999999988889999999998884 888999864
No 150
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=80.03 E-value=0.4 Score=41.70 Aligned_cols=40 Identities=23% Similarity=0.133 Sum_probs=26.2
Q ss_pred CCCcEEEeChHHHHHHHhcCC----c-ccCceeEEEEeccccccc
Q 042003 36 FSCDILISTPLRLRLAIRRKK----I-DLSRVEYLVLDEADKLFE 75 (248)
Q Consensus 36 ~~~~i~v~Tp~~l~~~~~~~~----~-~~~~~~~lIiDEah~~~~ 75 (248)
..+||||+...-+.+...+.. . ....-.++||||||.+.+
T Consensus 174 ~~ADvVV~ny~ylld~~~r~~~~~~~~i~p~~~ivI~DEAHNL~d 218 (620)
T 4a15_A 174 PDADIVIAPYAYFLNRSVAEKFLSHWGVSRNQIVIILDEAHNLPD 218 (620)
T ss_dssp GGCSEEEEEHHHHTCHHHHHHHHHHHTCCGGGEEEEETTGGGHHH
T ss_pred hcCCEEEeCchhhcCHHHHHHHHHhhccCcCCeEEEEECCCchHH
Confidence 468999999876554432211 1 012345899999999975
No 151
>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3
Probab=79.69 E-value=0.89 Score=30.87 Aligned_cols=36 Identities=19% Similarity=0.213 Sum_probs=31.7
Q ss_pred CCCEEEEecchHHHHHHHHHhhcCCC-eeEEEecCCC
Q 042003 160 NPPVLIFVQSKERAKELYGELAFDGI-RAGVIHSDLS 195 (248)
Q Consensus 160 ~~~~liF~~~~~~~~~l~~~L~~~~~-~v~~~~~~~~ 195 (248)
++++++||.+-..+...+..|+..|+ ++..+.||+.
T Consensus 82 ~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 118 (137)
T 1qxn_A 82 EKPVVVFCKTAARAALAGKTLREYGFKTIYNSEGGMD 118 (137)
T ss_dssp TSCEEEECCSSSCHHHHHHHHHHHTCSCEEEESSCHH
T ss_pred CCeEEEEcCCCcHHHHHHHHHHHcCCcceEEEcCcHH
Confidence 67899999998888999999999998 5999999954
No 152
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=79.51 E-value=3 Score=30.17 Aligned_cols=71 Identities=15% Similarity=0.115 Sum_probs=43.5
Q ss_pred CCCEEEEecchHHHHH-HHHHhhc---CCCeeEEEecCCCHHHHHHHHHHhhcCCceEEEEeccc-----cc-------C
Q 042003 160 NPPVLIFVQSKERAKE-LYGELAF---DGIRAGVIHSDLSQTQRENAVDDFRAGKTWVLIATDVI-----AR-------G 223 (248)
Q Consensus 160 ~~~~liF~~~~~~~~~-l~~~L~~---~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~-----~~-------G 223 (248)
+.+++|.+++..-+.+ +.+.++. .+..+..++|+.+...+..... +..+|+|+|... .. +
T Consensus 82 ~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 157 (216)
T 3b6e_A 82 PGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV----KSCDIIISTAQILENSLLNLENGEDAG 157 (216)
T ss_dssp CCCEEEEESSHHHHHHHHHHTHHHHHTTTSCEEECCC---CCCCHHHHH----HHCSEEEEEHHHHHHHHHC-------C
T ss_pred CCcEEEEECHHHHHHHHHHHHHHHHhccCceEEEEeCCcccchhHHhhc----cCCCEEEECHHHHHHHHhccCcccccc
Confidence 5799999999988877 6555544 3678888888765433221111 136799999532 12 2
Q ss_pred CCCCCCcEEEe
Q 042003 224 MDFKGVNCVIN 234 (248)
Q Consensus 224 idip~~~~Vi~ 234 (248)
+.+.++++||.
T Consensus 158 ~~~~~~~~iIi 168 (216)
T 3b6e_A 158 VQLSDFSLIII 168 (216)
T ss_dssp CCGGGCSEEEE
T ss_pred cchhcccEEEE
Confidence 55667777763
No 153
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=79.36 E-value=0.86 Score=29.36 Aligned_cols=36 Identities=17% Similarity=0.207 Sum_probs=31.4
Q ss_pred CCCEEEEecchHHHHHHHHHhhcCCC-eeEEEecCCC
Q 042003 160 NPPVLIFVQSKERAKELYGELAFDGI-RAGVIHSDLS 195 (248)
Q Consensus 160 ~~~~liF~~~~~~~~~l~~~L~~~~~-~v~~~~~~~~ 195 (248)
++++++||.+-..+...+..|+..|+ ++..+.||+.
T Consensus 58 ~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 94 (108)
T 1gmx_A 58 DTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFE 94 (108)
T ss_dssp TSCEEEECSSSSHHHHHHHHHHHHTCSSEEEETTHHH
T ss_pred CCCEEEEcCCCchHHHHHHHHHHcCCceEEEecCCHH
Confidence 57899999998889999999999998 4888999864
No 154
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=79.20 E-value=6.1 Score=32.69 Aligned_cols=65 Identities=18% Similarity=0.193 Sum_probs=47.2
Q ss_pred EcCCchhHHHHHHHHHhccCCCCEEEEecchHHHHHHHHHhhcCCCe-eEEEecCCCHHHHHHHHHHhhcCCceEEEEec
Q 042003 140 FAGSEEGKLLALRQSFAESLNPPVLIFVQSKERAKELYGELAFDGIR-AGVIHSDLSQTQRENAVDDFRAGKTWVLIATD 218 (248)
Q Consensus 140 ~~~~~~~~~~~l~~~~~~~~~~~~liF~~~~~~~~~l~~~L~~~~~~-v~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~ 218 (248)
..+.-..|.......+... +.+++|.++++.-+.++++.+++.+.. +..+||+.+. ..+|+|+|.
T Consensus 114 ~~~TGsGKT~~~l~~i~~~-~~~~Lvl~P~~~L~~Q~~~~~~~~~~~~v~~~~g~~~~-------------~~~Ivv~T~ 179 (472)
T 2fwr_A 114 VLPTGSGKTHVAMAAINEL-STPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIKE-------------LKPLTVSTY 179 (472)
T ss_dssp ECCTTSCHHHHHHHHHHHH-CSCEEEEESSHHHHHHHHHHGGGGCGGGEEEBSSSCBC-------------CCSEEEEEH
T ss_pred EeCCCCCHHHHHHHHHHHc-CCCEEEEECCHHHHHHHHHHHHhCCCcceEEECCCcCC-------------cCCEEEEEc
Confidence 3333344544444444433 689999999999999999999988888 9999998653 356888884
No 155
>2hhg_A Hypothetical protein RPA3614; MCSG, structural genomics, rohopseudom palustris, PSI-2, protein structure initiative; 1.20A {Rhodopseudomonas palustris}
Probab=77.58 E-value=1 Score=30.53 Aligned_cols=36 Identities=8% Similarity=0.117 Sum_probs=31.5
Q ss_pred CCCEEEEecchHHHHHHHHHhhcCCCe-eEEEecCCC
Q 042003 160 NPPVLIFVQSKERAKELYGELAFDGIR-AGVIHSDLS 195 (248)
Q Consensus 160 ~~~~liF~~~~~~~~~l~~~L~~~~~~-v~~~~~~~~ 195 (248)
++++++||.+-..+...+..|+..|+. +..+.||+.
T Consensus 86 ~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~ 122 (139)
T 2hhg_A 86 DKKFVFYCAGGLRSALAAKTAQDMGLKPVAHIEGGFG 122 (139)
T ss_dssp SSEEEEECSSSHHHHHHHHHHHHHTCCSEEEETTHHH
T ss_pred CCeEEEECCCChHHHHHHHHHHHcCCCCeEEecCCHH
Confidence 578999999988888999999999985 999999854
No 156
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=77.07 E-value=0.69 Score=40.62 Aligned_cols=69 Identities=16% Similarity=0.116 Sum_probs=46.4
Q ss_pred CCEEEEecchHHHHHH-HHHhhcCC---CeeEEEecCCCHHHHHHHHHHhhcCCceEEEEecc-cc-----------cCC
Q 042003 161 PPVLIFVQSKERAKEL-YGELAFDG---IRAGVIHSDLSQTQRENAVDDFRAGKTWVLIATDV-IA-----------RGM 224 (248)
Q Consensus 161 ~~~liF~~~~~~~~~l-~~~L~~~~---~~v~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~-~~-----------~Gi 224 (248)
+++||.++++.-+.+. ++.+++.. +.+..++|+.+..++...+. +..+|+|+|.- +. ..+
T Consensus 57 ~~vlvl~P~~~L~~Q~~~~~l~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~ 132 (699)
T 4gl2_A 57 GKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV----KSCDIIISTAQILENSLLNLENGEDAGV 132 (699)
T ss_dssp CCBCCEESCSHHHHHHHHHTHHHHHTTTSCEEEEC----CCCCHHHHH----HSCSEEEEEHHHHHHHTC--------CC
T ss_pred CeEEEEECCHHHHHHHHHHHHHHHcCcCceEEEEeCCcchhhHHHhhh----cCCCEEEECHHHHHHHHhccccccccce
Confidence 7999999999999988 88887653 79999999987654433322 45789999953 22 234
Q ss_pred CCCCCcEEE
Q 042003 225 DFKGVNCVI 233 (248)
Q Consensus 225 dip~~~~Vi 233 (248)
.+..+++||
T Consensus 133 ~~~~~~lvV 141 (699)
T 4gl2_A 133 QLSDFSLII 141 (699)
T ss_dssp CGGGCSEEE
T ss_pred ecccCcEEE
Confidence 666777776
No 157
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=76.86 E-value=2.4 Score=38.78 Aligned_cols=70 Identities=10% Similarity=0.107 Sum_probs=45.3
Q ss_pred CCCEEEEecchHHHHHHHHHhhcC----CCeeEEEecCCCHHHHHHHHHHhhcCCceEEEEecc-c----ccC-C-CCCC
Q 042003 160 NPPVLIFVQSKERAKELYGELAFD----GIRAGVIHSDLSQTQRENAVDDFRAGKTWVLIATDV-I----ARG-M-DFKG 228 (248)
Q Consensus 160 ~~~~liF~~~~~~~~~l~~~L~~~----~~~v~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~-~----~~G-i-dip~ 228 (248)
+++++|.++++.-+.++++.+++. +.++..+||+.+...+...+. +..+|+|+|.- + ..+ + .+.+
T Consensus 296 ~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~G~~~~~~~~~~~~----~~~~IvI~Tp~~L~~~l~~~~~~~l~~ 371 (936)
T 4a2w_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 371 (936)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECCC-----CCHHHH----HHCSEEEECHHHHHHHHHSSSCCCGGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEECCcchhhHHHHhc----cCCCEEEecHHHHHHHHHcCccccccC
Confidence 578999999999999888888764 889999999986654322221 13579999953 1 122 2 4555
Q ss_pred CcEEE
Q 042003 229 VNCVI 233 (248)
Q Consensus 229 ~~~Vi 233 (248)
+++||
T Consensus 372 ~~liV 376 (936)
T 4a2w_A 372 FTLMI 376 (936)
T ss_dssp CSEEE
T ss_pred CCEEE
Confidence 67666
No 158
>1vp8_A Hypothetical protein AF0103; putative pyruvate kinase, structural genomics, joint center structural genomics, JCSG; HET: MSE FMN; 1.30A {Archaeoglobus fulgidus} SCOP: c.49.1.2
Probab=76.80 E-value=3.4 Score=29.77 Aligned_cols=76 Identities=7% Similarity=0.003 Sum_probs=46.1
Q ss_pred hHHHHHHHHHhccCCCCEEEEecchHHHHHHHHHhhcCCCeeEEEecCCCHH----HHHHHHHHhhcCCceEEEEecccc
Q 042003 146 GKLLALRQSFAESLNPPVLIFVQSKERAKELYGELAFDGIRAGVIHSDLSQT----QRENAVDDFRAGKTWVLIATDVIA 221 (248)
Q Consensus 146 ~~~~~l~~~~~~~~~~~~liF~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~~----~r~~~~~~f~~g~~~ilv~T~~~~ 221 (248)
..++...+..+...-++++|...+-+++..+++.+...+.-+.-+|.+.... --.+..+.+++...+|+.+|..++
T Consensus 30 ~tl~la~era~e~~Ik~iVVAS~sG~TA~k~~e~~~~i~lVvVTh~~GF~~pg~~e~~~e~~~~L~~~G~~V~t~tH~ls 109 (201)
T 1vp8_A 30 ETLRLAVERAKELGIKHLVVASSYGDTAMKALEMAEGLEVVVVTYHTGFVREGENTMPPEVEEELRKRGAKIVRQSHILS 109 (201)
T ss_dssp HHHHHHHHHHHHHTCCEEEEECSSSHHHHHHHHHCTTCEEEEEECCTTSSSTTCCSSCHHHHHHHHHTTCEEEECCCTTT
T ss_pred HHHHHHHHHHHHcCCCEEEEEeCCChHHHHHHHHhcCCeEEEEeCcCCCCCCCCCcCCHHHHHHHHhCCCEEEEEecccc
Confidence 3444444555555457888888888999999998832222333444443211 113455556666788999987763
No 159
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=76.40 E-value=3.3 Score=36.22 Aligned_cols=69 Identities=13% Similarity=0.144 Sum_probs=48.1
Q ss_pred CCEEEEecchHHHHHHHHHhhcC----CCeeEEEecCCCHHHHHHHHHHhhcCCceEEEEecc-----cccC-C-CCCCC
Q 042003 161 PPVLIFVQSKERAKELYGELAFD----GIRAGVIHSDLSQTQRENAVDDFRAGKTWVLIATDV-----IARG-M-DFKGV 229 (248)
Q Consensus 161 ~~~liF~~~~~~~~~l~~~L~~~----~~~v~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~-----~~~G-i-dip~~ 229 (248)
++++|.++++.-+.+.++.+++. ++++..++|+.+...+...+. . ..+|+|+|.- +..| + ++.++
T Consensus 62 ~~~lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~---~-~~~Iiv~Tp~~L~~~l~~~~~~~l~~~ 137 (696)
T 2ykg_A 62 GKVVFFANQIPVYEQNKSVFSKYFERHGYRVTGISGATAENVPVEQIV---E-NNDIIILTPQILVNNLKKGTIPSLSIF 137 (696)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCSSSCHHHHH---H-TCSEEEECHHHHHHHHHTTSSCCGGGC
T ss_pred CeEEEEECCHHHHHHHHHHHHHHhccCCceEEEEeCCccccccHHHhc---c-CCCEEEECHHHHHHHHhcCcccccccc
Confidence 78999999999888888877654 789999999986543322221 1 4689999953 2222 3 56667
Q ss_pred cEEE
Q 042003 230 NCVI 233 (248)
Q Consensus 230 ~~Vi 233 (248)
++||
T Consensus 138 ~~vV 141 (696)
T 2ykg_A 138 TLMI 141 (696)
T ss_dssp SEEE
T ss_pred cEEE
Confidence 7776
No 160
>3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural genomics, protein structure initiative, northeast structural genomics consortium; 2.26A {Nostoc SP} PDB: 2kl3_A
Probab=75.70 E-value=1.5 Score=29.98 Aligned_cols=36 Identities=11% Similarity=0.249 Sum_probs=30.8
Q ss_pred CCCEEEEecchHHHHHHHHHhhcCCCe-eEEEecCCC
Q 042003 160 NPPVLIFVQSKERAKELYGELAFDGIR-AGVIHSDLS 195 (248)
Q Consensus 160 ~~~~liF~~~~~~~~~l~~~L~~~~~~-v~~~~~~~~ 195 (248)
++++++||.+-..+...+..|+..|+. +..+.||+.
T Consensus 56 ~~~ivvyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~ 92 (141)
T 3ilm_A 56 SRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLA 92 (141)
T ss_dssp TSEEEEECSSHHHHHHHHHHHHHTTCCSEEECTTHHH
T ss_pred CCeEEEEECCChHHHHHHHHHHHcCCCCEEEecCHHH
Confidence 567999999988899999999999984 888888854
No 161
>3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure, atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A {Saccharomyces cerevisiae}
Probab=75.46 E-value=1.4 Score=29.81 Aligned_cols=36 Identities=11% Similarity=0.206 Sum_probs=31.1
Q ss_pred CCCEEEEecchHHHHHHHHHhhcCCCe-eEEEecCCC
Q 042003 160 NPPVLIFVQSKERAKELYGELAFDGIR-AGVIHSDLS 195 (248)
Q Consensus 160 ~~~~liF~~~~~~~~~l~~~L~~~~~~-v~~~~~~~~ 195 (248)
++++++||.+-..+...+..|+..|+. +..+.||+.
T Consensus 91 ~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~ 127 (139)
T 3d1p_A 91 AKELIFYCASGKRGGEAQKVASSHGYSNTSLYPGSMN 127 (139)
T ss_dssp TSEEEEECSSSHHHHHHHHHHHTTTCCSEEECTTHHH
T ss_pred CCeEEEECCCCchHHHHHHHHHHcCCCCeEEeCCcHH
Confidence 568999999988899999999999984 888888854
No 162
>4f67_A UPF0176 protein LPG2838; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium; 1.79A {Legionella pneumophila subsp}
Probab=74.97 E-value=4 Score=31.20 Aligned_cols=49 Identities=8% Similarity=0.100 Sum_probs=38.2
Q ss_pred HHHHHHHHHhccCCCCEEEEecchHHHHHHHHHhhcCCC-eeEEEecCCC
Q 042003 147 KLLALRQSFAESLNPPVLIFVQSKERAKELYGELAFDGI-RAGVIHSDLS 195 (248)
Q Consensus 147 ~~~~l~~~~~~~~~~~~liF~~~~~~~~~l~~~L~~~~~-~v~~~~~~~~ 195 (248)
....+...+....++++++||.+-..+...+..|+..|+ ++..+.||+.
T Consensus 168 ~~~~l~~~l~~~kdk~IVvyC~~G~RS~~Aa~~L~~~Gf~nV~~L~GGi~ 217 (265)
T 4f67_A 168 FPDYVQRNLIDKKDKKIAMFCTGGIRCEKTTAYMKELGFEHVYQLHDGIL 217 (265)
T ss_dssp HHHHHHHHTGGGTTSCEEEECSSSHHHHHHHHHHHHHTCSSEEEETTHHH
T ss_pred hHHHHHHhhhhCCCCeEEEEeCCChHHHHHHHHHHHcCCCCEEEecCHHH
Confidence 334444444445578999999999999999999999998 6889999854
No 163
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=74.74 E-value=2.3 Score=39.70 Aligned_cols=63 Identities=22% Similarity=0.267 Sum_probs=48.1
Q ss_pred CCCEEEEecchHHHHHHHHHhhcCCCeeEEEecCCCHHHHHHHHHHhhcCCceEEEEec-----ccccCC-CCCCCcEEE
Q 042003 160 NPPVLIFVQSKERAKELYGELAFDGIRAGVIHSDLSQTQRENAVDDFRAGKTWVLIATD-----VIARGM-DFKGVNCVI 233 (248)
Q Consensus 160 ~~~~liF~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~-----~~~~Gi-dip~~~~Vi 233 (248)
+++++|.++++.-+.+.++.+++....++.++|+++ .+++.+|+|+|. .+..|- .+.++++||
T Consensus 227 g~rvlvl~PtraLa~Q~~~~l~~~~~~VglltGd~~-----------~~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVV 295 (1108)
T 3l9o_A 227 KQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDIT-----------INPDAGCLVMTTEILRSMLYRGSEVMREVAWVI 295 (1108)
T ss_dssp TCEEEEEESSHHHHHHHHHHHHHHTSSEEEECSSCB-----------CCCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEE
T ss_pred CCeEEEEcCcHHHHHHHHHHHHHHhCCccEEeCccc-----------cCCCCCEEEeChHHHHHHHHcCccccccCCEEE
Confidence 678999999999999999999886668999999876 245678999993 333332 255566665
No 164
>1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A
Probab=71.72 E-value=1.8 Score=29.08 Aligned_cols=36 Identities=17% Similarity=0.202 Sum_probs=31.2
Q ss_pred CCCEEEEecchHHHHHHHHHhhcCCC-eeEEEecCCC
Q 042003 160 NPPVLIFVQSKERAKELYGELAFDGI-RAGVIHSDLS 195 (248)
Q Consensus 160 ~~~~liF~~~~~~~~~l~~~L~~~~~-~v~~~~~~~~ 195 (248)
++++++||.+-..+...+..|+..|+ ++..+.|++.
T Consensus 74 ~~~ivv~C~sG~RS~~aa~~L~~~G~~~v~~l~GG~~ 110 (134)
T 1vee_A 74 NTTLYILDKFDGNSELVAELVALNGFKSAYAIKDGAE 110 (134)
T ss_dssp GCEEEEECSSSTTHHHHHHHHHHHTCSEEEECTTTTT
T ss_pred CCEEEEEeCCCCcHHHHHHHHHHcCCcceEEecCCcc
Confidence 57899999998888889999999998 5888889984
No 165
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=70.70 E-value=11 Score=30.02 Aligned_cols=66 Identities=15% Similarity=0.208 Sum_probs=45.7
Q ss_pred CCCEEEEecchHHHHHHHHHhhcC----CCeeEEEecCCCHHHHHHHHHHhhcCCceEEEEeccc------ccCCCCCCC
Q 042003 160 NPPVLIFVQSKERAKELYGELAFD----GIRAGVIHSDLSQTQRENAVDDFRAGKTWVLIATDVI------ARGMDFKGV 229 (248)
Q Consensus 160 ~~~~liF~~~~~~~~~l~~~L~~~----~~~v~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~------~~Gidip~~ 229 (248)
+.+++|.++++.-+.++++.+++. +..+...+++..... .....+|+|+|.-. ....++..+
T Consensus 75 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~iiv~T~~~l~~~~~~~~~~~~~~ 146 (395)
T 3pey_A 75 SPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKN--------KQINAQVIVGTPGTVLDLMRRKLMQLQKI 146 (395)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTT--------SCBCCSEEEECHHHHHHHHHTTCBCCTTC
T ss_pred CccEEEECCCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhh--------ccCCCCEEEEcHHHHHHHHHcCCcccccC
Confidence 568999999999999998888753 456777776543221 23356799999532 334567777
Q ss_pred cEEE
Q 042003 230 NCVI 233 (248)
Q Consensus 230 ~~Vi 233 (248)
++||
T Consensus 147 ~~iI 150 (395)
T 3pey_A 147 KIFV 150 (395)
T ss_dssp CEEE
T ss_pred CEEE
Confidence 7776
No 166
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=70.44 E-value=24 Score=30.85 Aligned_cols=77 Identities=16% Similarity=0.200 Sum_probs=52.2
Q ss_pred hHHHHHHHHHhccCCCCEEEEecchHHHHHHHHHhhcC--CCeeEEEe--------------------cCC--C---HHH
Q 042003 146 GKLLALRQSFAESLNPPVLIFVQSKERAKELYGELAFD--GIRAGVIH--------------------SDL--S---QTQ 198 (248)
Q Consensus 146 ~~~~~l~~~~~~~~~~~~liF~~~~~~~~~l~~~L~~~--~~~v~~~~--------------------~~~--~---~~~ 198 (248)
.|.-.+..++... ++++||.+++...|.++++.|+.. +..|..+- ... + ...
T Consensus 40 ~kt~~~a~~~~~~-~~~~lvv~~~~~~A~ql~~el~~~~~~~~V~~fps~yd~~~pe~~~~~~d~~~~~~~~~~~~i~~~ 118 (664)
T 1c4o_A 40 GKTVTMAKVIEAL-GRPALVLAPNKILAAQLAAEFRELFPENAVEYFISYYDYYQPEAYVPGKDLYIEKDASINPEIERL 118 (664)
T ss_dssp CHHHHHHHHHHHH-TCCEEEEESSHHHHHHHHHHHHHHCTTSEEEECCCGGGTSCCCEEEGGGTEEECCCCSCCHHHHHH
T ss_pred HHHHHHHHHHHHh-CCCEEEEecCHHHHHHHHHHHHHHCCCCeEEEcCchhhccCcccccchhhhhhhhhcccCHHHHHH
Confidence 4555666666554 578999999999999999999875 22343332 222 2 456
Q ss_pred HHHHHHHhhcCCceEEEEecccccC
Q 042003 199 RENAVDDFRAGKTWVLIATDVIARG 223 (248)
Q Consensus 199 r~~~~~~f~~g~~~ilv~T~~~~~G 223 (248)
|..++..+.+++..|+|+|-.+-.|
T Consensus 119 R~~~l~~L~~~~~~ivV~s~~~l~~ 143 (664)
T 1c4o_A 119 RHSTTRSLLTRRDVIVVASVSAIYG 143 (664)
T ss_dssp HHHHHHHHHHCSCEEEEEEGGGCSC
T ss_pred HHHHHHHHHhCCCeEEEecHHHHhc
Confidence 7778888877776788887544355
No 167
>2lci_A Protein OR36; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=69.30 E-value=18 Score=22.47 Aligned_cols=77 Identities=14% Similarity=0.091 Sum_probs=53.0
Q ss_pred cCCchhHHHHHHHHHhccCCCCEEEEecchHHHHHHHHHhhcCCCeeEEEecCCCHHHHHHHHHHhhcCCceEEEEe
Q 042003 141 AGSEEGKLLALRQSFAESLNPPVLIFVQSKERAKELYGELAFDGIRAGVIHSDLSQTQRENAVDDFRAGKTWVLIAT 217 (248)
Q Consensus 141 ~~~~~~~~~~l~~~~~~~~~~~~liF~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T 217 (248)
+.+.++.......+.+.....+++|..|.+.-...+.+.+.+.|+++..+-.+.+..+-++.-+...+....+--.|
T Consensus 32 vndsdelkkemkklaeeknfekiliisndkqllkemlelisklgykvflllqdqdeneleefkrkiesqgyevrkvt 108 (134)
T 2lci_A 32 VNDSDELKKEMKKLAEEKNFEKILIISNDKQLLKEMLELISKLGYKVFLLLQDQDENELEEFKRKIESQGYEVRKVT 108 (134)
T ss_dssp ECSHHHHHHHHHHHHHCCSCCCEEEEESCHHHHHHHHHHHHHHTCCEEEEEECSCHHHHHHHHHHHHTTTCEEEEEC
T ss_pred cCchHHHHHHHHHHHhhcCcceEEEEcCcHHHHHHHHHHHHHhCceeEEEeecCchhHHHHHHHHHHhCCeeeeecC
Confidence 33444444444555555556799999999888888888888999999998888777776666665555444444333
No 168
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=69.27 E-value=3.7 Score=34.42 Aligned_cols=74 Identities=22% Similarity=0.091 Sum_probs=53.6
Q ss_pred HHHHHHHHhccCCCCEEEEecchHHHHHHHHHhhcCCCeeEEEecCCCHHHHHHHHHHhhcCCceEEEEecccccCCCCC
Q 042003 148 LLALRQSFAESLNPPVLIFVQSKERAKELYGELAFDGIRAGVIHSDLSQTQRENAVDDFRAGKTWVLIATDVIARGMDFK 227 (248)
Q Consensus 148 ~~~l~~~~~~~~~~~~liF~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gidip 227 (248)
...+..+++.. +.++++.+.|...++++.+.|++.++.+....+. . .+..| .+.++...++.|+.+|
T Consensus 371 ~~~L~~~~~~~-~~rVvi~a~s~~r~erL~~~L~~~~i~~~~~~~~---~-------~~~~g--~v~i~~g~L~~GF~~p 437 (483)
T 3hjh_A 371 LDALRKFLETF-DGPVVFSVESEGRREALGELLARIKIAPQRIMRL---D-------EASDR--GRYLMIGAAEHGFVDT 437 (483)
T ss_dssp THHHHHHHHHC-CSCEEEEESCSSTTTTTHHHHGGGTCCCEECSCG---G-------GCCTT--CEEEEESCCCSCEEET
T ss_pred HHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHHHHcCCCceecCch---h-------hcCCC--cEEEEEcccccCcccC
Confidence 34555555433 5799999999999999999999988775543221 1 12333 4677777899999999
Q ss_pred CCcEEEe
Q 042003 228 GVNCVIN 234 (248)
Q Consensus 228 ~~~~Vi~ 234 (248)
+.+.++.
T Consensus 438 ~~klaVI 444 (483)
T 3hjh_A 438 VRNLALI 444 (483)
T ss_dssp TTTEEEE
T ss_pred CCCEEEE
Confidence 9888875
No 169
>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2
Probab=69.19 E-value=6.2 Score=30.14 Aligned_cols=37 Identities=16% Similarity=0.168 Sum_probs=32.4
Q ss_pred CCCEEEEecchHHHHHHHHHhhcCCC-eeEEEecCCCH
Q 042003 160 NPPVLIFVQSKERAKELYGELAFDGI-RAGVIHSDLSQ 196 (248)
Q Consensus 160 ~~~~liF~~~~~~~~~l~~~L~~~~~-~v~~~~~~~~~ 196 (248)
++++++||.+-..+...+..|+..|+ ++..+.||+..
T Consensus 230 ~~~ivv~C~~G~rs~~a~~~L~~~G~~~v~~~~GG~~~ 267 (280)
T 1urh_A 230 DKPIIVSCGSGVTAAVVLLALATLDVPNVKLYDGAWSE 267 (280)
T ss_dssp SSCEEEECCSSSTHHHHHHHHHHTTCSSCEEECCSCCC
T ss_pred CCCEEEECChHHHHHHHHHHHHHcCCCCceeeCChHHH
Confidence 67899999998888899999999998 59999999863
No 170
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=69.00 E-value=6.7 Score=31.50 Aligned_cols=67 Identities=12% Similarity=0.018 Sum_probs=45.2
Q ss_pred CCCEEEEecchHHHHHHHHHhhcC-----CCeeEEEecCCCHHHHHHHHHHhhcCCceEEEEeccc-------ccCCCCC
Q 042003 160 NPPVLIFVQSKERAKELYGELAFD-----GIRAGVIHSDLSQTQRENAVDDFRAGKTWVLIATDVI-------ARGMDFK 227 (248)
Q Consensus 160 ~~~~liF~~~~~~~~~l~~~L~~~-----~~~v~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~-------~~Gidip 227 (248)
+.+++|.++++.-+.++++.+++. +..+....++..... ......+|+|+|... ...+++.
T Consensus 95 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~ivv~T~~~l~~~~~~~~~~~~~ 167 (412)
T 3fht_A 95 YPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLER-------GQKISEQIVIGTPGTVLDWCSKLKFIDPK 167 (412)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCT-------TCCCCCSEEEECHHHHHHHHTTSCSSCGG
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhh-------hhcCCCCEEEECchHHHHHHHhcCCcChh
Confidence 458999999999999988777652 456777777654322 123456899999532 1345566
Q ss_pred CCcEEE
Q 042003 228 GVNCVI 233 (248)
Q Consensus 228 ~~~~Vi 233 (248)
.+++||
T Consensus 168 ~~~~iV 173 (412)
T 3fht_A 168 KIKVFV 173 (412)
T ss_dssp GCCEEE
T ss_pred hCcEEE
Confidence 777766
No 171
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=68.50 E-value=10 Score=32.48 Aligned_cols=71 Identities=13% Similarity=0.079 Sum_probs=48.5
Q ss_pred CCCEEEEecchHHHHHHHHHhhcC--------CCeeEEEecCCCHHHHHHHHHHhhcCCceEEEEeccc-----cc--CC
Q 042003 160 NPPVLIFVQSKERAKELYGELAFD--------GIRAGVIHSDLSQTQRENAVDDFRAGKTWVLIATDVI-----AR--GM 224 (248)
Q Consensus 160 ~~~~liF~~~~~~~~~l~~~L~~~--------~~~v~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~-----~~--Gi 224 (248)
..++||.++++.-+.++++.+++. ...+..+.|+.+... ..+.+..+..+|+|+|.-. .. ..
T Consensus 95 ~~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~---~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~ 171 (579)
T 3sqw_A 95 MVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRA---AMNKMNKLRPNIVIATPGRLIDVLEKYSNK 171 (579)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHH---HHHHHHHHCCSEEEECHHHHHHHHHHHHHH
T ss_pred CCeEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHH---HHHHHhcCCCCEEEECHHHHHHHHHhcccc
Confidence 348999999999999998888752 356777778766543 3444555567899999532 11 33
Q ss_pred CCCCCcEEE
Q 042003 225 DFKGVNCVI 233 (248)
Q Consensus 225 dip~~~~Vi 233 (248)
.+..+++||
T Consensus 172 ~~~~~~~lV 180 (579)
T 3sqw_A 172 FFRFVDYKV 180 (579)
T ss_dssp HCTTCCEEE
T ss_pred ccccCCEEE
Confidence 556677665
No 172
>3tg1_B Dual specificity protein phosphatase 10; kinase/rhodanese-like domain, docking interaction, transfera hydrolase complex; 2.71A {Homo sapiens}
Probab=68.34 E-value=3.1 Score=28.88 Aligned_cols=35 Identities=11% Similarity=0.264 Sum_probs=29.8
Q ss_pred CCCEEEEecch---------HHHHHHHHHhhcCCCeeEEEecCC
Q 042003 160 NPPVLIFVQSK---------ERAKELYGELAFDGIRAGVIHSDL 194 (248)
Q Consensus 160 ~~~~liF~~~~---------~~~~~l~~~L~~~~~~v~~~~~~~ 194 (248)
.+++|+||.+- ..+..++..|...|+.+..+.||+
T Consensus 93 ~~~IVvyc~~g~~~~~~~~~~~s~~a~~~L~~~G~~v~~L~GG~ 136 (158)
T 3tg1_B 93 SKEIIVYDENTNEPSRVMPSQPLHIVLESLKREGKEPLVLKGGL 136 (158)
T ss_dssp TSCEEEECSCCSCTTSCCSSSHHHHHHHHHHTTTCCEEEETTHH
T ss_pred CCeEEEEECCCCcccccCcchHHHHHHHHHHhCCCcEEEeCCcH
Confidence 57999999886 357888999999999999999985
No 173
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}
Probab=68.11 E-value=32 Score=25.96 Aligned_cols=59 Identities=19% Similarity=0.131 Sum_probs=42.3
Q ss_pred CCCEEEEecchHHHHHHHHHhhcCCCeeEEEecCCCHHHH-HHHHHHhh--cCCceEEEEec
Q 042003 160 NPPVLIFVQSKERAKELYGELAFDGIRAGVIHSDLSQTQR-ENAVDDFR--AGKTWVLIATD 218 (248)
Q Consensus 160 ~~~~liF~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~r-~~~~~~f~--~g~~~ilv~T~ 218 (248)
+-++++...+.+.++.+.+.++..+.++..+..+.+..+. ++..+... -|++++||..-
T Consensus 31 Ga~Vv~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~G~iDiLVNNA 92 (254)
T 4fn4_A 31 DSIVVAVELLEDRLNQIVQELRGMGKEVLGVKADVSKKKDVEEFVRRTFETYSRIDVLCNNA 92 (254)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred CCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 5567777777888899999999888888888888775443 33333322 27899999764
No 174
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=67.35 E-value=6.5 Score=34.55 Aligned_cols=67 Identities=22% Similarity=0.386 Sum_probs=48.5
Q ss_pred CCCEEEEecchHHHHHHHHHhhc---CCCeeEEEecCCCHHHHHHHHHHhhcCCceEEEEec-----ccccCCC-CCCCc
Q 042003 160 NPPVLIFVQSKERAKELYGELAF---DGIRAGVIHSDLSQTQRENAVDDFRAGKTWVLIATD-----VIARGMD-FKGVN 230 (248)
Q Consensus 160 ~~~~liF~~~~~~~~~l~~~L~~---~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~-----~~~~Gid-ip~~~ 230 (248)
++++++.++++.-+.+.++.++. .|.++..++|+....++ ..+..+|+|+|. .+..+-. +.+++
T Consensus 68 ~~~~l~i~P~r~La~q~~~~~~~~~~~g~~v~~~~G~~~~~~~-------~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~ 140 (702)
T 2p6r_A 68 GGKSLYVVPLRALAGEKYESFKKWEKIGLRIGISTGDYESRDE-------HLGDCDIIVTTSEKADSLIRNRASWIKAVS 140 (702)
T ss_dssp TCCEEEEESSHHHHHHHHHHHTTTTTTTCCEEEECSSCBCCSS-------CSTTCSEEEEEHHHHHHHHHTTCSGGGGCC
T ss_pred CCcEEEEeCcHHHHHHHHHHHHHHHhcCCEEEEEeCCCCcchh-------hccCCCEEEECHHHHHHHHHcChhHHhhcC
Confidence 67999999999999999988843 37789999998765432 124678999996 2223322 55677
Q ss_pred EEE
Q 042003 231 CVI 233 (248)
Q Consensus 231 ~Vi 233 (248)
+||
T Consensus 141 ~vI 143 (702)
T 2p6r_A 141 CLV 143 (702)
T ss_dssp EEE
T ss_pred EEE
Confidence 776
No 175
>3dmn_A Putative DNA helicase; APC89291.2, lactobacillus plantarum WCFS1, STR genomics, PSI-2, midwest center for structural genomics; HET: MSE; 1.66A {Lactobacillus plantarum}
Probab=66.52 E-value=30 Score=24.15 Aligned_cols=85 Identities=16% Similarity=0.201 Sum_probs=57.8
Q ss_pred EcCCchhHHHHHHHHHhc--cCCCCEEEEecchHHHHHHHHHhhcCCCeeEEEecCCCHHHHHHHHHHhhcCCceEEEEe
Q 042003 140 FAGSEEGKLLALRQSFAE--SLNPPVLIFVQSKERAKELYGELAFDGIRAGVIHSDLSQTQRENAVDDFRAGKTWVLIAT 217 (248)
Q Consensus 140 ~~~~~~~~~~~l~~~~~~--~~~~~~liF~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T 217 (248)
.+.+..+-...+.+.+.. ...+.+.|.+.+..++..+.+.|.+.|+++..+.++.. .....|.|+|
T Consensus 39 ~~~~~~~e~~~i~~~I~~~~~g~~~iAVL~r~~~~~~~l~~~L~~~gi~~~~l~~~~~------------~~~~~v~v~t 106 (174)
T 3dmn_A 39 VTPNFEAGVDQVVDQLAMNDSERDTTAIIGKSLAECEALTKALKARGEQVTLIQTENQ------------RLAPGVIVVP 106 (174)
T ss_dssp EESSHHHHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHHTTTCCEEECSSCC-------------CCCSSEEEEE
T ss_pred EeCCHHHHHHHHHHHHHHhccCCCcEEEEecCHHHHHHHHHHHHHcCCcceeeccccc------------ccCCCeEEEE
Confidence 344444444444443332 22567889999999999999999999888877765431 1124689999
Q ss_pred cccccCCCCCCCcEEEeccCCC
Q 042003 218 DVIARGMDFKGVNCVINYDFPD 239 (248)
Q Consensus 218 ~~~~~Gidip~~~~Vi~~~~p~ 239 (248)
--...|+. .+.||.+++..
T Consensus 107 ~~~~KGlE---f~~V~~~~~~~ 125 (174)
T 3dmn_A 107 SFLAKGLE---FDAVIVWNANQ 125 (174)
T ss_dssp GGGCTTCC---EEEEEEETCBT
T ss_pred ccccCCcC---CCEEEEecCCc
Confidence 99999987 55777777643
No 176
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=66.13 E-value=2.4 Score=36.04 Aligned_cols=70 Identities=13% Similarity=0.085 Sum_probs=48.0
Q ss_pred CCEEEEecchHHHHHHHHHhhcC--------CCeeEEEecCCCHHHHHHHHHHhhcCCceEEEEecccc-----c--CCC
Q 042003 161 PPVLIFVQSKERAKELYGELAFD--------GIRAGVIHSDLSQTQRENAVDDFRAGKTWVLIATDVIA-----R--GMD 225 (248)
Q Consensus 161 ~~~liF~~~~~~~~~l~~~L~~~--------~~~v~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~-----~--Gid 225 (248)
.++||.++++.-+.++++.+++. ...+..+.|+.+... ..+.+..+..+|+|+|.-.- . ...
T Consensus 147 ~~~lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~ 223 (563)
T 3i5x_A 147 VKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRA---AMNKMNKLRPNIVIATPGRLIDVLEKYSNKF 223 (563)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHH---HHHHHHHHCCSEEEECHHHHHHHHHHHHHHH
T ss_pred eeEEEEcCcHHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHH---HHHHHhcCCCCEEEECcHHHHHHHHhccccc
Confidence 48999999999999998888752 345777788766543 34444555678999996321 1 234
Q ss_pred CCCCcEEE
Q 042003 226 FKGVNCVI 233 (248)
Q Consensus 226 ip~~~~Vi 233 (248)
+..+++||
T Consensus 224 ~~~~~~lV 231 (563)
T 3i5x_A 224 FRFVDYKV 231 (563)
T ss_dssp CTTCCEEE
T ss_pred cccceEEE
Confidence 55677665
No 177
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=66.11 E-value=58 Score=27.24 Aligned_cols=76 Identities=12% Similarity=0.054 Sum_probs=51.8
Q ss_pred chhHHHHHHHHHhccCCCCEEEEecchHHHHHHHHHhhcC-CCeeEEEec-------CC-C----HHHHHHHHHHhhcCC
Q 042003 144 EEGKLLALRQSFAESLNPPVLIFVQSKERAKELYGELAFD-GIRAGVIHS-------DL-S----QTQRENAVDDFRAGK 210 (248)
Q Consensus 144 ~~~~~~~l~~~~~~~~~~~~liF~~~~~~~~~l~~~L~~~-~~~v~~~~~-------~~-~----~~~r~~~~~~f~~g~ 210 (248)
...|.-.+..+.+.. +++++|.+++...|.++++.|+.. +-.|..+=+ .. + ..+|..++..+.+++
T Consensus 24 gs~ka~~~a~l~~~~-~~p~lvv~~~~~~A~~l~~~l~~~~~~~v~~fp~~e~lpyd~~~p~~~~~~~Rl~~l~~L~~~~ 102 (483)
T 3hjh_A 24 GAACATLVAEIAERH-AGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQ 102 (483)
T ss_dssp TTHHHHHHHHHHHHS-SSCEEEEESSHHHHHHHHHHHHHTCSSCEEECCCCCSCTTCSSCCCHHHHHHHHHHHHHGGGCC
T ss_pred chHHHHHHHHHHHHh-CCCEEEEeCCHHHHHHHHHHHHhhCCCcEEEEeCcccccccccCCChHHHHHHHHHHHHHHhCC
Confidence 334556666666655 679999999999999999999864 223433311 11 1 234777888888888
Q ss_pred ceEEEEeccc
Q 042003 211 TWVLIATDVI 220 (248)
Q Consensus 211 ~~ilv~T~~~ 220 (248)
..|+|+|-.+
T Consensus 103 ~~ivv~sv~a 112 (483)
T 3hjh_A 103 RGVLIVPVNT 112 (483)
T ss_dssp SSEEEEEHHH
T ss_pred CCEEEEEHHH
Confidence 8888888443
No 178
>3gr1_A Protein PRGH; type III secretion system, inner membrane protein, cell membrane, membrane, transmembrane, virulence; 2.80A {Salmonella typhimurium}
Probab=65.20 E-value=20 Score=26.57 Aligned_cols=65 Identities=14% Similarity=0.061 Sum_probs=46.7
Q ss_pred CCCEEEEecchHHHHHHHHHhhcCC--CeeEEEecCCCHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCc-EEEecc
Q 042003 160 NPPVLIFVQSKERAKELYGELAFDG--IRAGVIHSDLSQTQRENAVDDFRAGKTWVLIATDVIARGMDFKGVN-CVINYD 236 (248)
Q Consensus 160 ~~~~liF~~~~~~~~~l~~~L~~~~--~~v~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gidip~~~-~Vi~~~ 236 (248)
++++.|++++..+++...+.|.+.+ -++.++ ....+++++.+.+.++ .|.+. +.|+++
T Consensus 26 d~~~yVla~~qrd~~W~rq~L~k~~~~~~~~V~---~~~~~~~~i~~~l~~~----------------~P~l~~~~i~l~ 86 (227)
T 3gr1_A 26 DKMLYVAAQNERDTLWARQVLARGDYDKNARVI---NENEENKRISIWLDTY----------------YPQLAYYRIHFD 86 (227)
T ss_dssp TSCEEEECSSHHHHHHHHHHHHHTTCTTTEEEE---CHHHHHHHHHHHHHHH----------------CTTCCEEEEECS
T ss_pred CCcEEEEEccccHHHHHHHHHHhcCCcCCeEEE---ehHHHHHHHHHHHHhc----------------CCceEEEEEEcC
Confidence 5679999999999999999998776 456666 4466677777776554 35555 556666
Q ss_pred CCCCccc
Q 042003 237 FPDSGAA 243 (248)
Q Consensus 237 ~p~~~~~ 243 (248)
.|.+|.-
T Consensus 87 ~P~~Pvl 93 (227)
T 3gr1_A 87 EPRKPVF 93 (227)
T ss_dssp STTSCEE
T ss_pred CCCCCEE
Confidence 6666654
No 179
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=65.19 E-value=19 Score=30.03 Aligned_cols=53 Identities=13% Similarity=0.094 Sum_probs=41.8
Q ss_pred CCCEEEEecchHHHHHHHHHhhcC----CCeeEEEecCCCHHHHHHHHHHhhcCCceEEEEecc
Q 042003 160 NPPVLIFVQSKERAKELYGELAFD----GIRAGVIHSDLSQTQRENAVDDFRAGKTWVLIATDV 219 (248)
Q Consensus 160 ~~~~liF~~~~~~~~~l~~~L~~~----~~~v~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~ 219 (248)
.++++|.+++..-+++.++.+++. +..+..++|+.+..++ ..+..+|+|+|.-
T Consensus 157 ~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~-------~~~~~~I~i~T~~ 213 (510)
T 2oca_A 157 EGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDDK-------YKNDAPVVVGTWQ 213 (510)
T ss_dssp SSEEEEEESSHHHHHHHHHHHHHTTSSCGGGEEECGGGCCTTGG-------GCTTCSEEEEEHH
T ss_pred CCeEEEEECcHHHHHHHHHHHHHhhcCCccceEEEecCCccccc-------cccCCcEEEEeHH
Confidence 459999999999999999999765 2468889998776543 3567789999953
No 180
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=64.02 E-value=4.9 Score=28.02 Aligned_cols=13 Identities=15% Similarity=0.286 Sum_probs=11.4
Q ss_pred eeEEEEecccccc
Q 042003 62 VEYLVLDEADKLF 74 (248)
Q Consensus 62 ~~~lIiDEah~~~ 74 (248)
-.++++||+|.+.
T Consensus 116 ~~vl~iDe~~~l~ 128 (187)
T 2p65_A 116 QVVMFIDEIHTVV 128 (187)
T ss_dssp SEEEEETTGGGGS
T ss_pred ceEEEEeCHHHhc
Confidence 4699999999987
No 181
>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/PROT initiative, RSGI, structural genomics, transferase; 1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2
Probab=63.29 E-value=8.9 Score=29.32 Aligned_cols=36 Identities=11% Similarity=0.228 Sum_probs=30.9
Q ss_pred CCCEEEEecchHHHHHHHHHhh-cCCC-eeEEEecCCC
Q 042003 160 NPPVLIFVQSKERAKELYGELA-FDGI-RAGVIHSDLS 195 (248)
Q Consensus 160 ~~~~liF~~~~~~~~~l~~~L~-~~~~-~v~~~~~~~~ 195 (248)
++++++||.+-..+...+..|+ ..|+ ++..+.||+.
T Consensus 233 ~~~ivvyC~~G~rs~~a~~~L~~~~G~~~v~~l~GG~~ 270 (285)
T 1uar_A 233 DKDIVVYCRIAERSSHSWFVLKYLLGYPHVKNYDGSWT 270 (285)
T ss_dssp TSEEEEECSSHHHHHHHHHHHHTTSCCSCEEEESSHHH
T ss_pred CCCEEEECCchHHHHHHHHHHHHHcCCCCcceeCchHH
Confidence 5689999999888888999998 8898 6899999853
No 182
>3gr0_A Protein PRGH; type III secretion system, inner membrane protein, cell MEMB membrane, transmembrane, virulence, membrane protein; 2.30A {Salmonella typhimurium} PDB: 2y9j_A
Probab=63.01 E-value=22 Score=25.72 Aligned_cols=65 Identities=14% Similarity=0.083 Sum_probs=46.8
Q ss_pred CCCEEEEecchHHHHHHHHHhhcCC--CeeEEEecCCCHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCc-EEEecc
Q 042003 160 NPPVLIFVQSKERAKELYGELAFDG--IRAGVIHSDLSQTQRENAVDDFRAGKTWVLIATDVIARGMDFKGVN-CVINYD 236 (248)
Q Consensus 160 ~~~~liF~~~~~~~~~l~~~L~~~~--~~v~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gidip~~~-~Vi~~~ 236 (248)
++++.|++++..+++...+.|.+.+ -++.++. ...+++++.+.+.++ .|.+. +-|+++
T Consensus 26 D~~iyVla~~qrd~~W~rQ~L~k~~~~e~~~Vi~---~~~e~~~i~~~L~~~----------------~P~l~~~~i~l~ 86 (197)
T 3gr0_A 26 DKMLYVAAQNERDTLWARQVLARGDYDKNARVIN---ENEENKRISIWLDTY----------------YPQLAYYRIHFD 86 (197)
T ss_dssp TSCEEEECSSHHHHHHHHHHHHHHTCTTTEEEEC---HHHHHHHHHHHHHHH----------------STTCCEEEEECS
T ss_pred CCcEEEEEccccHHHHHHHHHHhcCCCCCcEEee---hHHHHHHHHHHHHhc----------------CCceeEEEEecC
Confidence 5679999999999999999997765 4555555 456667777766544 45566 567777
Q ss_pred CCCCccc
Q 042003 237 FPDSGAA 243 (248)
Q Consensus 237 ~p~~~~~ 243 (248)
.|.+|.-
T Consensus 87 ~P~~P~l 93 (197)
T 3gr0_A 87 EPRKPVF 93 (197)
T ss_dssp STTSCEE
T ss_pred CCCCCEE
Confidence 7777654
No 183
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=61.62 E-value=3.8 Score=33.17 Aligned_cols=29 Identities=24% Similarity=0.221 Sum_probs=18.0
Q ss_pred ceeEEEEecccccccc--CcccccchhHhhh
Q 042003 61 RVEYLVLDEADKLFEV--GNLLKHIDPVVKA 89 (248)
Q Consensus 61 ~~~~lIiDEah~~~~~--~~~~~~~~~~~~~ 89 (248)
.-.++++||||.+... ..+...+..+.+.
T Consensus 262 ~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~ 292 (392)
T 4ag6_A 262 ERTVLVVDEAWMLVDPQTPQAIAFLRDTSKR 292 (392)
T ss_dssp TTCEEEETTGGGGCCTTCTHHHHHHHHHHHH
T ss_pred ccEEEEEecHHHHhCcCchHHHHHHHHHHHH
Confidence 3568999999998853 1133344444444
No 184
>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A
Probab=60.39 E-value=23 Score=23.41 Aligned_cols=39 Identities=13% Similarity=0.149 Sum_probs=34.1
Q ss_pred cchHHHHHHHHHhhcCCCeeEEEecCCCHHHHHHHHHHh
Q 042003 168 QSKERAKELYGELAFDGIRAGVIHSDLSQTQRENAVDDF 206 (248)
Q Consensus 168 ~~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~r~~~~~~f 206 (248)
.+++.|.++...|..+++....+.=+++++.|++..+..
T Consensus 14 ~~kk~c~~aK~lL~~kgV~feEidI~~d~~~r~eM~~~~ 52 (121)
T 1u6t_A 14 AIKKKQQDVLGFLEANKIGFEEKDIAANEENRKWMRENV 52 (121)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHS
T ss_pred cchHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHhc
Confidence 446788999999999999998888888999999988887
No 185
>3h11_B Caspase-8; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} SCOP: c.17.1.1 PDB: 2k7z_A 1i4e_B 2fun_B 2c2z_B*
Probab=60.38 E-value=19 Score=27.47 Aligned_cols=39 Identities=13% Similarity=0.026 Sum_probs=32.4
Q ss_pred chHHHHHHHHHhhcCCCeeEEEecCCCHHHHHHHHHHhhc
Q 042003 169 SKERAKELYGELAFDGIRAGVIHSDLSQTQRENAVDDFRA 208 (248)
Q Consensus 169 ~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~r~~~~~~f~~ 208 (248)
+..+++.+.+.|+..|+.|.. +..++.++-.+.++.|.+
T Consensus 47 t~~D~~~L~~~f~~LGF~V~~-~~dlt~~em~~~l~~~~~ 85 (271)
T 3h11_B 47 THLDAGALTTTFEELHFEIKP-HDDCTVEQIYEILKIYQL 85 (271)
T ss_dssp HHHHHHHHHHHHHHTTCEEEE-EESCCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCCCEEEE-EeCCCHHHHHHHHHHHHH
Confidence 457899999999999999854 567888888888888864
No 186
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=60.18 E-value=2.4 Score=31.19 Aligned_cols=39 Identities=8% Similarity=-0.030 Sum_probs=22.2
Q ss_pred CCcEEEeChHHHHHHHhcCCcccCceeEEEEeccccccc
Q 042003 37 SCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLFE 75 (248)
Q Consensus 37 ~~~i~v~Tp~~l~~~~~~~~~~~~~~~~lIiDEah~~~~ 75 (248)
+..++..+...+...+....-.+.+.+++++||+|.+..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~~~~ 118 (242)
T 3bos_A 80 ERRSFYIPLGIHASISTALLEGLEQFDLICIDDVDAVAG 118 (242)
T ss_dssp TCCEEEEEGGGGGGSCGGGGTTGGGSSEEEEETGGGGTT
T ss_pred CCeEEEEEHHHHHHHHHHHHHhccCCCEEEEeccccccC
Confidence 455665555443332221111245568999999999754
No 187
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=59.45 E-value=22 Score=31.17 Aligned_cols=64 Identities=14% Similarity=0.039 Sum_probs=47.5
Q ss_pred CCCEEEEecchHHHHHHHHHhhc-CCCeeEEEecCCCHHHHHHHHHHhhcCCceEEEEecc--c-ccCCCCCCCcEEEe
Q 042003 160 NPPVLIFVQSKERAKELYGELAF-DGIRAGVIHSDLSQTQRENAVDDFRAGKTWVLIATDV--I-ARGMDFKGVNCVIN 234 (248)
Q Consensus 160 ~~~~liF~~~~~~~~~l~~~L~~-~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~--~-~~Gidip~~~~Vi~ 234 (248)
+.+++|.++++..|.++++.+.+ .+..+....|+.. ..+..+|+|+|.- + ...++..++++||.
T Consensus 257 g~~vLVl~PTReLA~Qia~~l~~~~g~~vg~~vG~~~-----------~~~~~~IlV~TPGrLl~~~~l~l~~l~~lVl 324 (666)
T 3o8b_A 257 GYKVLVLNPSVAATLGFGAYMSKAHGIDPNIRTGVRT-----------ITTGAPVTYSTYGKFLADGGCSGGAYDIIIC 324 (666)
T ss_dssp TCCEEEEESCHHHHHHHHHHHHHHHSCCCEEECSSCE-----------ECCCCSEEEEEHHHHHHTTSCCTTSCSEEEE
T ss_pred CCeEEEEcchHHHHHHHHHHHHHHhCCCeeEEECcEe-----------ccCCCCEEEECcHHHHhCCCcccCcccEEEE
Confidence 56999999999999999988754 3666777777643 3567789999974 2 34566667887774
No 188
>3aay_A Putative thiosulfate sulfurtransferase; sulfurtranserase, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} PDB: 3aax_A 3hwi_A
Probab=58.20 E-value=17 Score=27.52 Aligned_cols=36 Identities=11% Similarity=0.049 Sum_probs=30.4
Q ss_pred CCCCEEEEecchHHHHHHHHHhhc-CCC-eeEEEecCC
Q 042003 159 LNPPVLIFVQSKERAKELYGELAF-DGI-RAGVIHSDL 194 (248)
Q Consensus 159 ~~~~~liF~~~~~~~~~l~~~L~~-~~~-~v~~~~~~~ 194 (248)
.++++++||.+-..+...+..|++ .|+ ++..+.|++
T Consensus 225 ~~~~iv~yC~~G~rs~~a~~~L~~~~G~~~v~~l~GG~ 262 (277)
T 3aay_A 225 NSKETIAYCRIGERSSHTWFVLRELLGHQNVKNYDGSW 262 (277)
T ss_dssp TTSCEEEECSSHHHHHHHHHHHHTTSCCSCEEEESSHH
T ss_pred CCCCEEEEcCcHHHHHHHHHHHHHHcCCCcceeeCchH
Confidence 367899999998888888889985 888 589999984
No 189
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=57.98 E-value=5.9 Score=30.93 Aligned_cols=62 Identities=13% Similarity=0.184 Sum_probs=33.3
Q ss_pred CCcEEEeChH-------HHHHHHhc--CCcccCceeEEEEeccccccccCcccccchhHhhhCCCccceeEEEE
Q 042003 37 SCDILISTPL-------RLRLAIRR--KKIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFS 101 (248)
Q Consensus 37 ~~~i~v~Tp~-------~l~~~~~~--~~~~~~~~~~lIiDEah~~~~~~~~~~~~~~~~~~~~~~~~~~i~~S 101 (248)
+++++...|. .+...+.. ........+++|+||||.+.... .+.+...++. .+....+++++
T Consensus 49 ~~d~~~l~~~~~~~~id~ir~li~~~~~~p~~~~~kvviIdead~lt~~a--~naLLk~LEe-p~~~t~fIl~t 119 (305)
T 2gno_A 49 ASDVLEIDPEGENIGIDDIRTIKDFLNYSPELYTRKYVIVHDCERMTQQA--ANAFLKALEE-PPEYAVIVLNT 119 (305)
T ss_dssp TTTEEEECCSSSCBCHHHHHHHHHHHTSCCSSSSSEEEEETTGGGBCHHH--HHHTHHHHHS-CCTTEEEEEEE
T ss_pred CCCEEEEcCCcCCCCHHHHHHHHHHHhhccccCCceEEEeccHHHhCHHH--HHHHHHHHhC-CCCCeEEEEEE
Confidence 5677777653 23333322 11224678999999999986543 2333344443 33344444443
No 190
>1t57_A Conserved protein MTH1675; structural genomics, FMN; HET: FMN; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.49.1.2
Probab=57.48 E-value=4.4 Score=29.31 Aligned_cols=70 Identities=14% Similarity=0.018 Sum_probs=43.2
Q ss_pred hHHHHHHHHHhccCCCCEEEEecchHHHHHHHHHhhcCCCeeEEEecC--------CCHHHHHHHHHHhhcCCceEEEEe
Q 042003 146 GKLLALRQSFAESLNPPVLIFVQSKERAKELYGELAFDGIRAGVIHSD--------LSQTQRENAVDDFRAGKTWVLIAT 217 (248)
Q Consensus 146 ~~~~~l~~~~~~~~~~~~liF~~~~~~~~~l~~~L~~~~~~v~~~~~~--------~~~~~r~~~~~~f~~g~~~ilv~T 217 (248)
..++...+..+...-++++|...+-+.+..+++.+.. +.-+.-+|.+ |+++. .+.+++...+|+.+|
T Consensus 38 ~tl~la~era~e~~Ik~iVVASssG~TA~k~~e~~~~-~lVvVTh~~GF~~pg~~e~~~e~----~~~L~~~G~~V~t~t 112 (206)
T 1t57_A 38 RVLELVGERADQLGIRNFVVASVSGETALRLSEMVEG-NIVSVTHHAGFREKGQLELEDEA----RDALLERGVNVYAGS 112 (206)
T ss_dssp HHHHHHHHHHHHHTCCEEEEECSSSHHHHHHHTTCCS-EEEEECCCTTSSSTTCCSSCHHH----HHHHHHHTCEEECCS
T ss_pred HHHHHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHccC-CEEEEeCcCCCCCCCCCcCCHHH----HHHHHhCCCEEEEee
Confidence 3444444555555457888888888999999988722 2223333433 44444 444555577888888
Q ss_pred ccc
Q 042003 218 DVI 220 (248)
Q Consensus 218 ~~~ 220 (248)
..+
T Consensus 113 H~l 115 (206)
T 1t57_A 113 HAL 115 (206)
T ss_dssp CTT
T ss_pred ccc
Confidence 776
No 191
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=57.45 E-value=6.7 Score=27.95 Aligned_cols=14 Identities=14% Similarity=0.216 Sum_probs=12.1
Q ss_pred CceeEEEEeccccc
Q 042003 60 SRVEYLVLDEADKL 73 (248)
Q Consensus 60 ~~~~~lIiDEah~~ 73 (248)
.+.+++++||+|.+
T Consensus 75 ~~~dvviIDE~Q~~ 88 (184)
T 2orw_A 75 EDTRGVFIDEVQFF 88 (184)
T ss_dssp TTEEEEEECCGGGS
T ss_pred CCCCEEEEECcccC
Confidence 36889999999986
No 192
>2eg4_A Probable thiosulfate sulfurtransferase; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 1.70A {Thermus thermophilus} PDB: 2eg3_A
Probab=57.34 E-value=5.5 Score=29.47 Aligned_cols=36 Identities=19% Similarity=0.193 Sum_probs=31.4
Q ss_pred CCCEEEEecchHHHHHHHHHhhcCCCeeEEEecCCC
Q 042003 160 NPPVLIFVQSKERAKELYGELAFDGIRAGVIHSDLS 195 (248)
Q Consensus 160 ~~~~liF~~~~~~~~~l~~~L~~~~~~v~~~~~~~~ 195 (248)
++++++||.+-..+...+..|+..|.++..+.|++.
T Consensus 184 ~~~iv~~C~~G~rs~~a~~~L~~~G~~v~~~~Gg~~ 219 (230)
T 2eg4_A 184 GQEVGVYCHSGARSAVAFFVLRSLGVRARNYLGSMH 219 (230)
T ss_dssp TCEEEEECSSSHHHHHHHHHHHHTTCEEEECSSHHH
T ss_pred CCCEEEEcCChHHHHHHHHHHHHcCCCcEEecCcHH
Confidence 578999999999999999999988877888888854
No 193
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=56.80 E-value=7.5 Score=33.62 Aligned_cols=37 Identities=16% Similarity=0.181 Sum_probs=24.8
Q ss_pred ceeEEEEeccccccccCcccccchhHhhhCCCccceeEEEEee
Q 042003 61 RVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSAT 103 (248)
Q Consensus 61 ~~~~lIiDEah~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT 103 (248)
+++++|||||+++.. ..+..+++. .+...|++++.-.
T Consensus 262 ~~d~lIIDEAsml~~-----~~~~~Ll~~-l~~~~~liLvGD~ 298 (608)
T 1w36_D 262 HLDVLVVDEASMIDL-----PMMSRLIDA-LPDHARVIFLGDR 298 (608)
T ss_dssp SCSEEEECSGGGCBH-----HHHHHHHHT-CCTTCEEEEEECT
T ss_pred CCCEEEEechhhCCH-----HHHHHHHHh-CCCCCEEEEEcch
Confidence 578999999996532 345556665 3456777776644
No 194
>1pyo_A Caspase-2; apoptosis, caspase, alpha-beta, thiol protease, hydrolase-HY inhibitor complex; 1.65A {Homo sapiens} SCOP: c.17.1.1 PDB: 3rjm_A* 2p2c_A 3r5j_A 3r6g_A 3r6l_A 3r7b_A 3r7n_A 3r7s_A
Probab=56.59 E-value=27 Score=24.46 Aligned_cols=38 Identities=13% Similarity=0.175 Sum_probs=31.4
Q ss_pred hHHHHHHHHHhhcCCCeeEEEecCCCHHHHHHHHHHhhc
Q 042003 170 KERAKELYGELAFDGIRAGVIHSDLSQTQRENAVDDFRA 208 (248)
Q Consensus 170 ~~~~~~l~~~L~~~~~~v~~~~~~~~~~~r~~~~~~f~~ 208 (248)
..+++.+.+.|+..|+.|.+ +..++.++-.+.++.|.+
T Consensus 57 ~~D~~~L~~~f~~LgF~V~~-~~dlt~~em~~~l~~~~~ 94 (167)
T 1pyo_A 57 DVDHSTLVTLFKLLGYDVHV-LCDQTAQEMQEKLQNFAQ 94 (167)
T ss_dssp HHHHHHHHHHHHHTTEEEEE-EESCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCCEEEE-eeCCCHHHHHHHHHHhhh
Confidence 45889999999999999854 667888888888888865
No 195
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=56.34 E-value=9.9 Score=31.51 Aligned_cols=89 Identities=13% Similarity=0.058 Sum_probs=53.0
Q ss_pred EEEcCCchhHHHH-HHHHHhccC----CCCEEEEecchHHHHHHHHHhhcC-----CCeeEEEecCCCHHHHHHHHHHhh
Q 042003 138 LVFAGSEEGKLLA-LRQSFAESL----NPPVLIFVQSKERAKELYGELAFD-----GIRAGVIHSDLSQTQRENAVDDFR 207 (248)
Q Consensus 138 ~~~~~~~~~~~~~-l~~~~~~~~----~~~~liF~~~~~~~~~l~~~L~~~-----~~~v~~~~~~~~~~~r~~~~~~f~ 207 (248)
+.....-..|... +..++.... ..++||.++++.-+.++++.+++. +..+....++..... ..
T Consensus 135 l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~ 207 (479)
T 3fmp_B 135 IAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLER-------GQ 207 (479)
T ss_dssp EEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCT-------TC
T ss_pred EEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCccccc-------cc
Confidence 3344444455543 444443322 338999999999999987776542 456666666543221 11
Q ss_pred cCCceEEEEecccc-------cCCCCCCCcEEE
Q 042003 208 AGKTWVLIATDVIA-------RGMDFKGVNCVI 233 (248)
Q Consensus 208 ~g~~~ilv~T~~~~-------~Gidip~~~~Vi 233 (248)
....+|+|+|...- ..+++.++++||
T Consensus 208 ~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iV 240 (479)
T 3fmp_B 208 KISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFV 240 (479)
T ss_dssp CCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEE
T ss_pred cCCCCEEEECchHHHHHHHhcCCcCcccCCEEE
Confidence 23457999996432 356777788776
No 196
>2h54_A Caspase-1; allosteric site, dimer interface, hydrolase; HET: PHQ; 1.80A {Homo sapiens} PDB: 1rwm_A* 1rwk_A* 1rwo_A* 1rwp_A* 1rwv_A* 1rww_A* 1rwn_A* 2h48_A* 2h4w_A* 1rwx_A* 2hbq_A* 2hby_A* 1ibc_A 3d6m_A* 2h4y_A* 2h51_A* 3d6f_A* 3d6h_A* 2hbz_A* 2hbr_A* ...
Probab=55.42 E-value=35 Score=24.17 Aligned_cols=47 Identities=15% Similarity=0.172 Sum_probs=37.3
Q ss_pred CCEEEEecc-----------hHHHHHHHHHhhcCCCeeEEEecCCCHHHHHHHHHHhhc
Q 042003 161 PPVLIFVQS-----------KERAKELYGELAFDGIRAGVIHSDLSQTQRENAVDDFRA 208 (248)
Q Consensus 161 ~~~liF~~~-----------~~~~~~l~~~L~~~~~~v~~~~~~~~~~~r~~~~~~f~~ 208 (248)
+.+||+.+. ..+++.+.+.|+..|+.|.. +..++.++-.+.++.|.+
T Consensus 44 g~ALIInn~~f~~~~~R~G~~~Da~~L~~~f~~LgF~V~~-~~dlt~~em~~~l~~f~~ 101 (178)
T 2h54_A 44 RLALIICNEEFDSIPRRTGAEVDITGMTMLLQNLGYSVDV-KKNLTASDMTTELEAFAH 101 (178)
T ss_dssp CEEEEEECCCCSSSCCCTTHHHHHHHHHHHHHHTTCEEEE-EESCCHHHHHHHHHHHHT
T ss_pred CEEEEEehhhcCCCccCCCCHHHHHHHHHHHHHCCCEEEE-ecCCCHHHHHHHHHHHHh
Confidence 347777654 58999999999999999865 566888888888888853
No 197
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=55.29 E-value=48 Score=28.95 Aligned_cols=78 Identities=22% Similarity=0.295 Sum_probs=52.0
Q ss_pred hHHHHHHHHHhccCCCCEEEEecchHHHHHHHHHhhcC--CCeeEEEe--------------------cCC--C---HHH
Q 042003 146 GKLLALRQSFAESLNPPVLIFVQSKERAKELYGELAFD--GIRAGVIH--------------------SDL--S---QTQ 198 (248)
Q Consensus 146 ~~~~~l~~~~~~~~~~~~liF~~~~~~~~~l~~~L~~~--~~~v~~~~--------------------~~~--~---~~~ 198 (248)
.|.-.+..++... ++++||.+++...|.++++.|+.. +..|..+- ... + ...
T Consensus 44 ~k~~~~a~~~~~~-~~~~lvv~~~~~~A~~l~~el~~~~~~~~v~~fps~yd~~~pe~~~~~~d~y~~~~~~~~~~i~~~ 122 (661)
T 2d7d_A 44 GKTFTVSNLIKEV-NKPTLVIAHNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDASINDEIDKL 122 (661)
T ss_dssp CHHHHHHHHHHHH-CCCEEEECSSHHHHHHHHHHHHHHCTTSEEEEECCCEEEEECCEEETTTTEEECCEEEECHHHHHH
T ss_pred HHHHHHHHHHHHh-CCCEEEEECCHHHHHHHHHHHHHHcCCCcEEEccccccccCccccCCcchhhhhhhcccCHHHHHH
Confidence 4555566566554 568999999999999999999865 22343332 111 2 456
Q ss_pred HHHHHHHhhcCCceEEEEecccccCC
Q 042003 199 RENAVDDFRAGKTWVLIATDVIARGM 224 (248)
Q Consensus 199 r~~~~~~f~~g~~~ilv~T~~~~~Gi 224 (248)
|..++..+.+++..|+|+|-.+-.|+
T Consensus 123 Rl~~l~~L~~~~~~ivV~sv~al~~l 148 (661)
T 2d7d_A 123 RHSATSALFERRDVIIIASVSCIYGL 148 (661)
T ss_dssp HHHHHHHHHHCSCEEEEECGGGGSCB
T ss_pred HHHHHHHHHhCCCeEEEecHHHHcCC
Confidence 77888888766666888875443553
No 198
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=55.28 E-value=9.7 Score=35.20 Aligned_cols=63 Identities=22% Similarity=0.270 Sum_probs=46.5
Q ss_pred CCCEEEEecchHHHHHHHHHhhcCCCeeEEEecCCCHHHHHHHHHHhhcCCceEEEEec-----ccccC-CCCCCCcEEE
Q 042003 160 NPPVLIFVQSKERAKELYGELAFDGIRAGVIHSDLSQTQRENAVDDFRAGKTWVLIATD-----VIARG-MDFKGVNCVI 233 (248)
Q Consensus 160 ~~~~liF~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~-----~~~~G-idip~~~~Vi 233 (248)
+.++++.++++.-+.+.++.+.+....++.++|+.+.. ...+|+|+|. .+..| ..+.++++||
T Consensus 129 g~rvL~l~PtkaLa~Q~~~~l~~~~~~vglltGd~~~~-----------~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVV 197 (1010)
T 2xgj_A 129 KQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDITIN-----------PDAGCLVMTTEILRSMLYRGSEVMREVAWVI 197 (1010)
T ss_dssp TCEEEEEESSHHHHHHHHHHHHHHHSCEEEECSSCEEC-----------TTCSEEEEEHHHHHHHHHHTCTTGGGEEEEE
T ss_pred CCeEEEECChHHHHHHHHHHHHHHhCCEEEEeCCCccC-----------CCCCEEEEcHHHHHHHHHcCcchhhcCCEEE
Confidence 67999999999999999999887644889999987632 3467999986 22233 4455667666
No 199
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=54.98 E-value=4.7 Score=27.62 Aligned_cols=17 Identities=35% Similarity=0.509 Sum_probs=13.3
Q ss_pred cCceeEEEEeccccccc
Q 042003 59 LSRVEYLVLDEADKLFE 75 (248)
Q Consensus 59 ~~~~~~lIiDEah~~~~ 75 (248)
..+.+++|+||++.+..
T Consensus 81 ~~~~~lLilDE~~~~~~ 97 (149)
T 2kjq_A 81 AFEAEYLAVDQVEKLGN 97 (149)
T ss_dssp GGGCSEEEEESTTCCCS
T ss_pred HhCCCEEEEeCccccCh
Confidence 35678999999998544
No 200
>1qtn_A Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_A* 3kjq_A* 2y1l_A 2c2z_A 1qdu_A* 1f9e_A*
Probab=54.65 E-value=38 Score=23.64 Aligned_cols=38 Identities=13% Similarity=0.014 Sum_probs=31.3
Q ss_pred hHHHHHHHHHhhcCCCeeEEEecCCCHHHHHHHHHHhhc
Q 042003 170 KERAKELYGELAFDGIRAGVIHSDLSQTQRENAVDDFRA 208 (248)
Q Consensus 170 ~~~~~~l~~~L~~~~~~v~~~~~~~~~~~r~~~~~~f~~ 208 (248)
..+++.+.+.|+..|+.|.+ +..++.++-.+.++.|.+
T Consensus 54 ~~D~~~L~~~f~~LgF~V~~-~~dlt~~em~~~l~~~~~ 91 (164)
T 1qtn_A 54 HLDAGALTTTFEELHFEIKP-HDDCTVEQIYEILKIYQL 91 (164)
T ss_dssp HHHHHHHHHHHHHTTCEEEE-EESCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCEEEE-ecCCCHHHHHHHHHHHHH
Confidence 67889999999999999855 666788888888888854
No 201
>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2
Probab=54.34 E-value=9.1 Score=29.19 Aligned_cols=35 Identities=11% Similarity=0.240 Sum_probs=28.4
Q ss_pred CCCEEEEecchHH-HHHHHHHhhcCCC-eeEEEecCC
Q 042003 160 NPPVLIFVQSKER-AKELYGELAFDGI-RAGVIHSDL 194 (248)
Q Consensus 160 ~~~~liF~~~~~~-~~~l~~~L~~~~~-~v~~~~~~~ 194 (248)
++++|+||.+-.. +..++..|+..|+ ++..+.||+
T Consensus 86 ~~~ivvyc~~g~~~a~~a~~~L~~~G~~~v~~l~GG~ 122 (280)
T 1urh_A 86 DKHLIVYDEGNLFSAPRAWWMLRTFGVEKVSILGGGL 122 (280)
T ss_dssp TSEEEEECSSSCSSHHHHHHHHHHTTCSCEEEETTHH
T ss_pred CCeEEEECCCCCccHHHHHHHHHHcCCCCEEEecCCH
Confidence 5789999988655 7888889999988 688888764
No 202
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=54.20 E-value=33 Score=20.57 Aligned_cols=59 Identities=19% Similarity=0.407 Sum_probs=37.6
Q ss_pred hHHHHHHHHHhccCCCCEEEEecc--hHHHHHHHHHhhcCCCeeEEEecCCCHHHHHHHHHHh
Q 042003 146 GKLLALRQSFAESLNPPVLIFVQS--KERAKELYGELAFDGIRAGVIHSDLSQTQRENAVDDF 206 (248)
Q Consensus 146 ~~~~~l~~~~~~~~~~~~liF~~~--~~~~~~l~~~L~~~~~~v~~~~~~~~~~~r~~~~~~f 206 (248)
+.+..+..-++.. +++.+||++. ...+......-++.|.+..++.+. .+++-.+-.+.|
T Consensus 38 qdirdiiksmkdn-gkplvvfvngasqndvnefqneakkegvsydvlkst-dpeeltqrvref 98 (112)
T 2lnd_A 38 QDIRDIIKSMKDN-GKPLVVFVNGASQNDVNEFQNEAKKEGVSYDVLKST-DPEELTQRVREF 98 (112)
T ss_dssp HHHHHHHHHHTTC-CSCEEEEECSCCHHHHHHHHHHHHHHTCEEEEEECC-CHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhc-CCeEEEEecCcccccHHHHHHHHHhcCcchhhhccC-CHHHHHHHHHHH
Confidence 4444455555555 7899999986 455666666777778888777765 444444444444
No 203
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=53.28 E-value=16 Score=26.00 Aligned_cols=40 Identities=20% Similarity=0.125 Sum_probs=23.6
Q ss_pred CceeEEEEeccccccccCcccccchhHhhhCCCccceeEEEEe
Q 042003 60 SRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSA 102 (248)
Q Consensus 60 ~~~~~lIiDEah~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SA 102 (248)
.+-.++++||+|.+... ....+..++.. ......++++|.
T Consensus 101 ~~~~vliiDe~~~l~~~--~~~~l~~~l~~-~~~~~~~i~~~~ 140 (226)
T 2chg_A 101 APFKIIFLDEADALTAD--AQAALRRTMEM-YSKSCRFILSCN 140 (226)
T ss_dssp CSCEEEEEETGGGSCHH--HHHHHHHHHHH-TTTTEEEEEEES
T ss_pred cCceEEEEeChhhcCHH--HHHHHHHHHHh-cCCCCeEEEEeC
Confidence 56779999999997643 23334444444 234455555443
No 204
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=53.04 E-value=16 Score=33.66 Aligned_cols=48 Identities=15% Similarity=0.183 Sum_probs=39.5
Q ss_pred CCCEEEEecchHHHHHHHHHhhcC--CCeeEEEecCCCHHHHHHHHHHhhcCCceEEEEec
Q 042003 160 NPPVLIFVQSKERAKELYGELAFD--GIRAGVIHSDLSQTQRENAVDDFRAGKTWVLIATD 218 (248)
Q Consensus 160 ~~~~liF~~~~~~~~~l~~~L~~~--~~~v~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~ 218 (248)
+.+++|.++++.-+.+.++.+++. +..+..++|+.+ .+++.+|+|+|.
T Consensus 82 g~~vlvl~PtraLa~Q~~~~l~~~~~~~~v~~l~G~~~-----------~~~~~~IlV~Tp 131 (997)
T 4a4z_A 82 MTKTIYTSPIKALSNQKFRDFKETFDDVNIGLITGDVQ-----------INPDANCLIMTT 131 (997)
T ss_dssp TCEEEEEESCGGGHHHHHHHHHTTC--CCEEEECSSCE-----------ECTTSSEEEEEH
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHcCCCeEEEEeCCCc-----------cCCCCCEEEECH
Confidence 578999999999999999999875 668999999875 235578888885
No 205
>3e4c_A Caspase-1; zymogen, inflammasome, ICE, IL-1B, innate immunity, apoptosis, hydrolase, protease protease; 2.05A {Homo sapiens}
Probab=52.91 E-value=41 Score=26.16 Aligned_cols=46 Identities=15% Similarity=0.182 Sum_probs=38.9
Q ss_pred CEEEEecc-----------hHHHHHHHHHhhcCCCeeEEEecCCCHHHHHHHHHHhhc
Q 042003 162 PVLIFVQS-----------KERAKELYGELAFDGIRAGVIHSDLSQTQRENAVDDFRA 208 (248)
Q Consensus 162 ~~liF~~~-----------~~~~~~l~~~L~~~~~~v~~~~~~~~~~~r~~~~~~f~~ 208 (248)
-+|||+|. ..+++.+.+.|+..|+.|.. +..++.++-.+.++.|.+
T Consensus 62 ~aLII~N~~f~~l~~R~G~~~Da~~L~~~f~~LGF~V~~-~~dlt~~em~~~l~~f~~ 118 (302)
T 3e4c_A 62 LALIICNEEFDSIPRRTGAEVDITGMTMLLQNLGYSVDV-KKNLTASDMTTELEAFAH 118 (302)
T ss_dssp EEEEEECCSCSSSCCCTTHHHHHHHHHHHHHHTTCEEEE-EESCCHHHHHHHHHHHHT
T ss_pred EEEEEECcCCCCCCCCCCcHHHHHHHHHHHHHCCCEEEE-eeCCCHHHHHHHHHHHHh
Confidence 48899877 67899999999999999864 556888999999999854
No 206
>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/PROT initiative, RSGI, structural genomics, transferase; 1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2
Probab=52.81 E-value=15 Score=28.08 Aligned_cols=35 Identities=9% Similarity=0.235 Sum_probs=28.2
Q ss_pred CCCEEEEecchH-HHHHHHHHhhcCCC-eeEEEecCC
Q 042003 160 NPPVLIFVQSKE-RAKELYGELAFDGI-RAGVIHSDL 194 (248)
Q Consensus 160 ~~~~liF~~~~~-~~~~l~~~L~~~~~-~v~~~~~~~ 194 (248)
+.++++||.+-. .+..++..|+..|+ ++..+.||+
T Consensus 79 ~~~ivvyc~~g~~~s~~a~~~L~~~G~~~v~~l~GG~ 115 (285)
T 1uar_A 79 DTTVVLYGDKNNWWAAYAFWFFKYNGHKDVRLMNGGR 115 (285)
T ss_dssp TCEEEEECHHHHHHHHHHHHHHHHTTCSCEEEETTHH
T ss_pred CCeEEEECCCCCccHHHHHHHHHHcCCCCeEEecCCH
Confidence 578999998866 67888889998888 588888764
No 207
>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X
Probab=52.40 E-value=8.7 Score=29.14 Aligned_cols=36 Identities=14% Similarity=0.088 Sum_probs=30.9
Q ss_pred CCCEEEEecchHHHHHHHHHhhcCCC-eeEEEecCCC
Q 042003 160 NPPVLIFVQSKERAKELYGELAFDGI-RAGVIHSDLS 195 (248)
Q Consensus 160 ~~~~liF~~~~~~~~~l~~~L~~~~~-~v~~~~~~~~ 195 (248)
++++++||.+-..+...+..|+..|+ ++..+.|++.
T Consensus 223 ~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~ 259 (271)
T 1e0c_A 223 DKEIVTHCQTHHRSGLTYLIAKALGYPRVKGYAGSWG 259 (271)
T ss_dssp TSEEEEECSSSSHHHHHHHHHHHTTCSCEEECSSHHH
T ss_pred CCCEEEECCchHHHHHHHHHHHHcCCCCceeeCCcHH
Confidence 57899999998888899999999998 5888888753
No 208
>1m72_A Caspase-1; caspase, cysteine protease, hydrolase-hydrolase inhibitor CO; 2.30A {Spodoptera frugiperda} SCOP: c.17.1.1 PDB: 3sip_B
Probab=51.53 E-value=45 Score=25.42 Aligned_cols=39 Identities=13% Similarity=0.124 Sum_probs=32.4
Q ss_pred hHHHHHHHHHhhcCCCeeEEEecCCCHHHHHHHHHHhhcC
Q 042003 170 KERAKELYGELAFDGIRAGVIHSDLSQTQRENAVDDFRAG 209 (248)
Q Consensus 170 ~~~~~~l~~~L~~~~~~v~~~~~~~~~~~r~~~~~~f~~g 209 (248)
..+++.+.+.|+..|+.|.. +..++.++-.+.++.|.+.
T Consensus 55 ~~Da~~L~~~f~~LGF~V~~-~~dlt~~em~~~l~~~~~~ 93 (272)
T 1m72_A 55 NVDSDNLSKVLKTLGFKVTV-FPNLKSEEINKFIQQTAEM 93 (272)
T ss_dssp HHHHHHHHHHHHHTTCEEEE-EESCCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHCCCEEEE-ecCcCHHHHHHHHHHHHHh
Confidence 78899999999999999854 5568888888888888653
No 209
>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X
Probab=51.35 E-value=15 Score=27.76 Aligned_cols=35 Identities=14% Similarity=0.120 Sum_probs=28.0
Q ss_pred CCCEEEEecchH-HHHHHHHHhhcCCC-eeEEEecCC
Q 042003 160 NPPVLIFVQSKE-RAKELYGELAFDGI-RAGVIHSDL 194 (248)
Q Consensus 160 ~~~~liF~~~~~-~~~~l~~~L~~~~~-~v~~~~~~~ 194 (248)
+.++++||.+-. .+..++..|+..|+ ++..+.||+
T Consensus 81 ~~~vvvyc~~g~~~s~~a~~~L~~~G~~~v~~L~GG~ 117 (271)
T 1e0c_A 81 EAVYVVYDDEGGGWAGRFIWLLDVIGQQRYHYLNGGL 117 (271)
T ss_dssp TCEEEEECSSSSHHHHHHHHHHHHTTCCCEEEETTHH
T ss_pred CCeEEEEcCCCCccHHHHHHHHHHcCCCCeEEecCCH
Confidence 568889998765 78888889999888 487887764
No 210
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=51.31 E-value=30 Score=21.30 Aligned_cols=77 Identities=6% Similarity=0.026 Sum_probs=42.8
Q ss_pred EEEcCCchhHHHHHHHHHhccCCCCEEEEecchHHHHHHHHHhhcCCCeeEEEecCCCHHHHHHHHHHhhc----CCceE
Q 042003 138 LVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKERAKELYGELAFDGIRAGVIHSDLSQTQRENAVDDFRA----GKTWV 213 (248)
Q Consensus 138 ~~~~~~~~~~~~~l~~~~~~~~~~~~liF~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~r~~~~~~f~~----g~~~i 213 (248)
++.++++......+...++.. +- .+..+.+..++.. .+....+.+.++.-.++...-.+.++.+++ ....+
T Consensus 4 iliv~~~~~~~~~l~~~l~~~-g~-~v~~~~~~~~~~~---~l~~~~~dlii~d~~~~~~~~~~~~~~l~~~~~~~~~~i 78 (119)
T 2j48_A 4 ILLLEEEDEAATVVCEMLTAA-GF-KVIWLVDGSTALD---QLDLLQPIVILMAWPPPDQSCLLLLQHLREHQADPHPPL 78 (119)
T ss_dssp EEEECCCHHHHHHHHHHHHHT-TC-EEEEESCHHHHHH---HHHHHCCSEEEEECSTTCCTHHHHHHHHHHTCCCSSCCC
T ss_pred EEEEeCCHHHHHHHHHHHHhC-Cc-EEEEecCHHHHHH---HHHhcCCCEEEEecCCCCCCHHHHHHHHHhccccCCCCE
Confidence 344566666667777777754 23 3445555554443 333445677777766654444455555543 23456
Q ss_pred EEEecc
Q 042003 214 LIATDV 219 (248)
Q Consensus 214 lv~T~~ 219 (248)
++.|+.
T Consensus 79 i~~~~~ 84 (119)
T 2j48_A 79 VLFLGE 84 (119)
T ss_dssp EEEESS
T ss_pred EEEeCC
Confidence 655543
No 211
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=50.81 E-value=23 Score=27.80 Aligned_cols=43 Identities=12% Similarity=0.128 Sum_probs=26.3
Q ss_pred CceeEEEEeccccccccCcccccchhHhhh--CCCccceeEEEEeecCc
Q 042003 60 SRVEYLVLDEADKLFEVGNLLKHIDPVVKA--CSNPSIVRSLFSATLPD 106 (248)
Q Consensus 60 ~~~~~lIiDEah~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~SAT~~~ 106 (248)
...-++++||+|.+.+. ..+..+++. ....+.-+|+.++|+..
T Consensus 131 ~~~~ii~lDE~d~l~~q----~~L~~l~~~~~~~~s~~~vI~i~n~~d~ 175 (318)
T 3te6_A 131 KRKTLILIQNPENLLSE----KILQYFEKWISSKNSKLSIICVGGHNVT 175 (318)
T ss_dssp SCEEEEEEECCSSSCCT----HHHHHHHHHHHCSSCCEEEEEECCSSCC
T ss_pred CCceEEEEecHHHhhcc----hHHHHHHhcccccCCcEEEEEEecCccc
Confidence 34568999999998732 333334332 12344567788888754
No 212
>3hzu_A Thiosulfate sulfurtransferase SSEA; niaid, ssgcid, infectious disease, transferase structural genomics; 2.10A {Mycobacterium tuberculosis} PDB: 3p3a_A
Probab=50.25 E-value=18 Score=28.32 Aligned_cols=35 Identities=11% Similarity=0.122 Sum_probs=28.8
Q ss_pred CCCEEEEecchH-HHHHHHHHhhcCCC-eeEEEecCC
Q 042003 160 NPPVLIFVQSKE-RAKELYGELAFDGI-RAGVIHSDL 194 (248)
Q Consensus 160 ~~~~liF~~~~~-~~~~l~~~L~~~~~-~v~~~~~~~ 194 (248)
+++++|||.+-. .+..++..|+..|+ ++..+.||+
T Consensus 111 ~~~vVvyc~~g~~~a~~a~~~L~~~G~~~V~~L~GG~ 147 (318)
T 3hzu_A 111 DDTVVIYGDKSNWWAAYALWVFTLFGHADVRLLNGGR 147 (318)
T ss_dssp TCEEEEECSGGGHHHHHHHHHHHHTTCSCEEEETTHH
T ss_pred CCeEEEECCCCCccHHHHHHHHHHcCCCceEEccCCH
Confidence 578999998765 78888999999888 588888764
No 213
>3lwd_A 6-phosphogluconolactonase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; 1.75A {Chromohalobacter salexigens}
Probab=49.83 E-value=24 Score=26.13 Aligned_cols=28 Identities=25% Similarity=0.289 Sum_probs=24.3
Q ss_pred ChHHHHHHHhcCCcccCceeEEEEeccc
Q 042003 44 TPLRLRLAIRRKKIDLSRVEYLVLDEAD 71 (248)
Q Consensus 44 Tp~~l~~~~~~~~~~~~~~~~lIiDEah 71 (248)
||..+.+.+....++++++.++-+||=-
T Consensus 44 tp~~~y~~L~~~~idw~~v~~f~~DEr~ 71 (226)
T 3lwd_A 44 TPKPFFTSLAAKALPWARVDVTLADERW 71 (226)
T ss_dssp TTHHHHHHHHTSCSCGGGEEEEESEEES
T ss_pred CHHHHHHHHHhcCCCchhEEEEEeeecc
Confidence 6888888888888999999999999953
No 214
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=49.63 E-value=7.3 Score=29.50 Aligned_cols=16 Identities=25% Similarity=0.686 Sum_probs=12.9
Q ss_pred CceeEEEEeccccccc
Q 042003 60 SRVEYLVLDEADKLFE 75 (248)
Q Consensus 60 ~~~~~lIiDEah~~~~ 75 (248)
...+++++||+|.+..
T Consensus 123 ~~~~vl~iDEid~l~~ 138 (272)
T 1d2n_A 123 SQLSCVVVDDIERLLD 138 (272)
T ss_dssp SSEEEEEECCHHHHTT
T ss_pred cCCcEEEEEChhhhhc
Confidence 4578999999999853
No 215
>2j32_A Caspase-3; Pro-caspase3, thiol protease, hydrolase, hydrolase-hydrolase inhibitor complex; 1.30A {Homo sapiens} PDB: 2j30_A 3h0e_A* 2j33_A 3pd1_A 2j31_A 3pcx_A 1nms_A* 1nmq_A* 3deh_A* 3dei_A* 3dej_A* 3dek_A* 3pd0_A 3itn_A 1qx3_A
Probab=49.61 E-value=80 Score=23.65 Aligned_cols=39 Identities=13% Similarity=0.064 Sum_probs=32.6
Q ss_pred hHHHHHHHHHhhcCCCeeEEEecCCCHHHHHHHHHHhhcC
Q 042003 170 KERAKELYGELAFDGIRAGVIHSDLSQTQRENAVDDFRAG 209 (248)
Q Consensus 170 ~~~~~~l~~~L~~~~~~v~~~~~~~~~~~r~~~~~~f~~g 209 (248)
..+++.+.+.|+..|+.|.. +..++.++-.+.++.|.+.
T Consensus 40 ~~D~~~l~~~f~~LgF~V~~-~~dlt~~em~~~l~~~~~~ 78 (250)
T 2j32_A 40 DVDAANLRETFRNLKYEVRN-KNDLTREEIVELMRDVSKE 78 (250)
T ss_dssp HHHHHHHHHHHHHTTCEEEE-EESCCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHCCCEEEE-EeCCCHHHHHHHHHHHHHh
Confidence 45899999999999999854 6678888888999988754
No 216
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=49.42 E-value=7.6 Score=30.26 Aligned_cols=41 Identities=17% Similarity=0.166 Sum_probs=23.0
Q ss_pred cCceeEEEEeccccccccCcccccchhHhhhCCCccceeEEEE
Q 042003 59 LSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFS 101 (248)
Q Consensus 59 ~~~~~~lIiDEah~~~~~~~~~~~~~~~~~~~~~~~~~~i~~S 101 (248)
..+.+++++||+|.+.... ....+...+.. .+.+.++|+.+
T Consensus 103 ~~~~~vliiDEi~~l~~~~-~~~~L~~~le~-~~~~~~iI~~~ 143 (324)
T 3u61_B 103 DGRQKVIVIDEFDRSGLAE-SQRHLRSFMEA-YSSNCSIIITA 143 (324)
T ss_dssp SSCEEEEEEESCCCGGGHH-HHHHHHHHHHH-HGGGCEEEEEE
T ss_pred CCCCeEEEEECCcccCcHH-HHHHHHHHHHh-CCCCcEEEEEe
Confidence 3478899999999986221 23333343333 22345555533
No 217
>3i2v_A Adenylyltransferase and sulfurtransferase MOCS3; rhodanese, UBA4, structural genomics, ubiquitin biology, structural genomics consortium, SGC; 1.25A {Homo sapiens}
Probab=49.01 E-value=7.2 Score=25.49 Aligned_cols=35 Identities=9% Similarity=0.095 Sum_probs=28.3
Q ss_pred CCEEEEecchHHHHHHHHHhhcC------C-CeeEEEecCCC
Q 042003 161 PPVLIFVQSKERAKELYGELAFD------G-IRAGVIHSDLS 195 (248)
Q Consensus 161 ~~~liF~~~~~~~~~l~~~L~~~------~-~~v~~~~~~~~ 195 (248)
.++++||.+-..+...+..|+.. | .++..+.||+.
T Consensus 73 ~~ivv~C~~G~rs~~a~~~L~~~gg~~~~G~~~v~~l~GG~~ 114 (127)
T 3i2v_A 73 VPIYVICKLGNDSQKAVKILQSLSAAQELDPLTVRDVVGGLM 114 (127)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHHHTTSSSCEEEEEETTHHH
T ss_pred CeEEEEcCCCCcHHHHHHHHHHhhccccCCCceEEEecCCHH
Confidence 38999999988888888888877 3 47888999864
No 218
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=48.87 E-value=9.6 Score=33.60 Aligned_cols=67 Identities=24% Similarity=0.309 Sum_probs=47.8
Q ss_pred CCCEEEEecchHHHHHHHHHhhc---CCCeeEEEecCCCHHHHHHHHHHhhcCCceEEEEecc-----cccCCC-CCCCc
Q 042003 160 NPPVLIFVQSKERAKELYGELAF---DGIRAGVIHSDLSQTQRENAVDDFRAGKTWVLIATDV-----IARGMD-FKGVN 230 (248)
Q Consensus 160 ~~~~liF~~~~~~~~~l~~~L~~---~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~-----~~~Gid-ip~~~ 230 (248)
+.++++.++++.-+.++++.++. .+.++..++|+.+...+. .+..+|+|+|.- +..+.. +.+++
T Consensus 68 ~~~~l~i~P~raLa~q~~~~~~~l~~~g~~v~~~~G~~~~~~~~-------~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~ 140 (720)
T 2zj8_A 68 GGKAVYIVPLKALAEEKFQEFQDWEKIGLRVAMATGDYDSKDEW-------LGKYDIIIATAEKFDSLLRHGSSWIKDVK 140 (720)
T ss_dssp CSEEEEECSSGGGHHHHHHHTGGGGGGTCCEEEECSCSSCCCGG-------GGGCSEEEECHHHHHHHHHHTCTTGGGEE
T ss_pred CCEEEEEcCcHHHHHHHHHHHHHHHhcCCEEEEecCCCCccccc-------cCCCCEEEECHHHHHHHHHcChhhhhcCC
Confidence 57999999999999999988863 478999999987654431 245789999962 222222 45566
Q ss_pred EEE
Q 042003 231 CVI 233 (248)
Q Consensus 231 ~Vi 233 (248)
+||
T Consensus 141 ~vI 143 (720)
T 2zj8_A 141 ILV 143 (720)
T ss_dssp EEE
T ss_pred EEE
Confidence 665
No 219
>1rhs_A Sulfur-substituted rhodanese; transferase, sulfurtransferase; 1.36A {Bos taurus} SCOP: c.46.1.2 c.46.1.2 PDB: 1boh_A 1boi_A 1orb_A 2ora_A 1dp2_A* 1rhd_A
Probab=48.41 E-value=16 Score=28.19 Aligned_cols=36 Identities=8% Similarity=0.035 Sum_probs=31.0
Q ss_pred CCCEEEEecchHHHHHHHHHhhcCCCe-eEEEecCCC
Q 042003 160 NPPVLIFVQSKERAKELYGELAFDGIR-AGVIHSDLS 195 (248)
Q Consensus 160 ~~~~liF~~~~~~~~~l~~~L~~~~~~-v~~~~~~~~ 195 (248)
++++++||.+-..+...+..|+..|+. +..+.|++.
T Consensus 240 ~~~ivv~C~sG~rs~~a~~~L~~~G~~~v~~~~GG~~ 276 (296)
T 1rhs_A 240 TKPLIATCRKGVTACHIALAAYLCGKPDVAIYDGSWF 276 (296)
T ss_dssp TSCEEEECSSSSTHHHHHHHHHHTTCCCCEEESSHHH
T ss_pred CCCEEEECCcHHHHHHHHHHHHHcCCCCceeeCCcHH
Confidence 678999999988888888899999984 889999854
No 220
>2nn3_C Caspase-1; cysteine protease, hydrolase; 3.00A {Spodoptera frugiperda}
Probab=48.20 E-value=47 Score=25.96 Aligned_cols=48 Identities=15% Similarity=0.164 Sum_probs=37.0
Q ss_pred CCEEEEecc-------------hHHHHHHHHHhhcCCCeeEEEecCCCHHHHHHHHHHhhcC
Q 042003 161 PPVLIFVQS-------------KERAKELYGELAFDGIRAGVIHSDLSQTQRENAVDDFRAG 209 (248)
Q Consensus 161 ~~~liF~~~-------------~~~~~~l~~~L~~~~~~v~~~~~~~~~~~r~~~~~~f~~g 209 (248)
+-+|||.|. ..+++.+.+.|+..|+.|.. +..++.++-.+.++.|.+.
T Consensus 61 g~aLIInN~~F~~~~l~~R~Gt~~Da~~L~~~f~~LGF~V~~-~~dlt~~em~~~l~~f~~~ 121 (310)
T 2nn3_C 61 GMAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLKTLGFKVTV-FPNLKSEEINKFIQQTAEM 121 (310)
T ss_dssp CEEEEEECCCCSSTTCCCCTTHHHHHHHHHHHHHHTTCEEEE-EESCCHHHHHHHHHHHHSS
T ss_pred CEEEEEechhcCCCCcccCCCCHHHHHHHHHHHHHCCCEEEE-ecCCCHHHHHHHHHHHHHh
Confidence 457777654 67889999999999998754 5568888888888888653
No 221
>3aay_A Putative thiosulfate sulfurtransferase; sulfurtranserase, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} PDB: 3aax_A 3hwi_A
Probab=48.14 E-value=22 Score=26.94 Aligned_cols=35 Identities=11% Similarity=0.133 Sum_probs=27.7
Q ss_pred CCCEEEEecch-HHHHHHHHHhhcCCC-eeEEEecCC
Q 042003 160 NPPVLIFVQSK-ERAKELYGELAFDGI-RAGVIHSDL 194 (248)
Q Consensus 160 ~~~~liF~~~~-~~~~~l~~~L~~~~~-~v~~~~~~~ 194 (248)
++++++||.+- ..+..++..|+..|+ ++..+.||+
T Consensus 77 ~~~vvvyc~~g~~~s~~a~~~L~~~G~~~v~~l~GG~ 113 (277)
T 3aay_A 77 EDTVILYGGNNNWFAAYAYWYFKLYGHEKVKLLDGGR 113 (277)
T ss_dssp TSEEEEECSGGGHHHHHHHHHHHHTTCCSEEEETTHH
T ss_pred CCeEEEECCCCCchHHHHHHHHHHcCCCcEEEecCCH
Confidence 56789999874 357788888988888 688888874
No 222
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=48.04 E-value=10 Score=29.91 Aligned_cols=18 Identities=17% Similarity=0.222 Sum_probs=14.6
Q ss_pred cCceeEEEEecccccccc
Q 042003 59 LSRVEYLVLDEADKLFEV 76 (248)
Q Consensus 59 ~~~~~~lIiDEah~~~~~ 76 (248)
....+++||||+|.+...
T Consensus 106 ~~~~kvviIdead~l~~~ 123 (334)
T 1a5t_A 106 LGGAKVVWVTDAALLTDA 123 (334)
T ss_dssp TSSCEEEEESCGGGBCHH
T ss_pred cCCcEEEEECchhhcCHH
Confidence 456889999999998653
No 223
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=47.80 E-value=9.1 Score=33.70 Aligned_cols=67 Identities=12% Similarity=0.134 Sum_probs=47.4
Q ss_pred CCCEEEEecchHHHHHHHHHhhc---CCCeeEEEecCCCHHHHHHHHHHhhcCCceEEEEec-----ccccCCC-CCCCc
Q 042003 160 NPPVLIFVQSKERAKELYGELAF---DGIRAGVIHSDLSQTQRENAVDDFRAGKTWVLIATD-----VIARGMD-FKGVN 230 (248)
Q Consensus 160 ~~~~liF~~~~~~~~~l~~~L~~---~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~-----~~~~Gid-ip~~~ 230 (248)
++++++.++++.-+.+.++.++. .|.++..++|+....++ .+ +..+|+|+|. .+..+-. +.+++
T Consensus 75 ~~~il~i~P~r~La~q~~~~~~~~~~~g~~v~~~~G~~~~~~~-----~~--~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~ 147 (715)
T 2va8_A 75 GGKAIYVTPLRALTNEKYLTFKDWELIGFKVAMTSGDYDTDDA-----WL--KNYDIIITTYEKLDSLWRHRPEWLNEVN 147 (715)
T ss_dssp CSEEEEECSCHHHHHHHHHHHGGGGGGTCCEEECCSCSSSCCG-----GG--GGCSEEEECHHHHHHHHHHCCGGGGGEE
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHhhcCCCEEEEEeCCCCCchh-----hc--CCCCEEEEcHHHHHHHHhCChhHhhccC
Confidence 57999999999999988888743 47899999998765442 12 3568999996 2222322 55667
Q ss_pred EEE
Q 042003 231 CVI 233 (248)
Q Consensus 231 ~Vi 233 (248)
+||
T Consensus 148 ~vI 150 (715)
T 2va8_A 148 YFV 150 (715)
T ss_dssp EEE
T ss_pred EEE
Confidence 766
No 224
>2dko_A Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 1nme_A 2h5i_A 2h5j_A 2h65_A 2xyg_A* 2xyh_A 2xyp_A* 2xzd_A 2xzt_A 2y0b_A 3edq_A 1gfw_A 1re1_A* 1pau_A* 1rhk_A* 1rhm_A* 1rhq_A* 1rhr_A* 1rhu_A* 1rhj_A* ...
Probab=47.69 E-value=58 Score=22.16 Aligned_cols=39 Identities=13% Similarity=0.083 Sum_probs=31.5
Q ss_pred chHHHHHHHHHhhcCCCeeEEEecCCCHHHHHHHHHHhhc
Q 042003 169 SKERAKELYGELAFDGIRAGVIHSDLSQTQRENAVDDFRA 208 (248)
Q Consensus 169 ~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~r~~~~~~f~~ 208 (248)
+..+++.+.+.|+..|+.|.+ +..++.++-.+.++.|.+
T Consensus 39 t~~D~~~L~~~f~~LgF~V~~-~~dlt~~em~~~l~~~~~ 77 (146)
T 2dko_A 39 TDVDAANLRETFRNLKYEVRN-KNDLTREEIVELMRDVSK 77 (146)
T ss_dssp HHHHHHHHHHHHHHTTCEEEE-EESCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCEEEE-eeCCCHHHHHHHHHHHHH
Confidence 456889999999999999865 555788888888888864
No 225
>3h11_A CAsp8 and FADD-like apoptosis regulator; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} PDB: 3h13_A
Probab=46.77 E-value=8.7 Score=29.48 Aligned_cols=48 Identities=15% Similarity=0.038 Sum_probs=41.2
Q ss_pred CCCEEEEecchHHHHHHHHHhhcCCCeeEEEecCCCHHHHHHHHHHhhc
Q 042003 160 NPPVLIFVQSKERAKELYGELAFDGIRAGVIHSDLSQTQRENAVDDFRA 208 (248)
Q Consensus 160 ~~~~liF~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~r~~~~~~f~~ 208 (248)
-+-+|||.+...+++.+.+.|+..|+.|.. +..++.++-.+.++.|.+
T Consensus 43 rG~~LIinn~~~D~~~L~~~f~~LgF~V~~-~~dlt~~em~~~l~~~~~ 90 (272)
T 3h11_A 43 LGICLIIDCIGNETELLRDTFTSLGYEVQK-FLHLSMHGISQILGQFAC 90 (272)
T ss_dssp SEEEEEEESSCCCCSHHHHHHHHHTEEEEE-EESCBHHHHHHHHHHHHT
T ss_pred ceEEEEECCchHHHHHHHHHHHHCCCEEEE-eeCCCHHHHHHHHHHHHh
Confidence 457999999999999999999999999865 556888888888888865
No 226
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=46.74 E-value=24 Score=27.11 Aligned_cols=39 Identities=18% Similarity=0.208 Sum_probs=22.9
Q ss_pred CceeEEEEeccccccccCcccccchhHhhhCCCccceeEEEE
Q 042003 60 SRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFS 101 (248)
Q Consensus 60 ~~~~~lIiDEah~~~~~~~~~~~~~~~~~~~~~~~~~~i~~S 101 (248)
.+..++|+||+|.+.... ...+...+.. .+....+++.+
T Consensus 109 ~~~~vliiDe~~~l~~~~--~~~L~~~le~-~~~~~~~i~~~ 147 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQDA--QQALRRTMEM-FSSNVRFILSC 147 (327)
T ss_dssp CSCEEEEEETGGGSCHHH--HHHHHHHHHH-TTTTEEEEEEE
T ss_pred CCCeEEEEeCCCcCCHHH--HHHHHHHHHh-cCCCCeEEEEe
Confidence 567899999999986432 3334444444 33444555443
No 227
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=46.56 E-value=54 Score=21.12 Aligned_cols=78 Identities=10% Similarity=0.092 Sum_probs=50.2
Q ss_pred EEEEcCCchhHHHHHHHHHhccCCCCEEEEecchHHHHHHHHHhhcCCCeeEEEecCCCHHHHHHHHHHhhc----CCce
Q 042003 137 KLVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKERAKELYGELAFDGIRAGVIHSDLSQTQRENAVDDFRA----GKTW 212 (248)
Q Consensus 137 ~~~~~~~~~~~~~~l~~~~~~~~~~~~liF~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~r~~~~~~f~~----g~~~ 212 (248)
.++.++++......+..++... +- .+..+.+..++. +.+....+.+.++.-.++...-.+.++.+++ ....
T Consensus 8 ~iLivdd~~~~~~~l~~~l~~~-g~-~v~~~~~~~~a~---~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~~ 82 (140)
T 3grc_A 8 RILICEDDPDIARLLNLMLEKG-GF-DSDMVHSAAQAL---EQVARRPYAAMTVDLNLPDQDGVSLIRALRRDSRTRDLA 82 (140)
T ss_dssp EEEEECSCHHHHHHHHHHHHHT-TC-EEEEECSHHHHH---HHHHHSCCSEEEECSCCSSSCHHHHHHHHHTSGGGTTCE
T ss_pred CEEEEcCCHHHHHHHHHHHHHC-CC-eEEEECCHHHHH---HHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCcccCCCC
Confidence 4556777777778888888774 22 355555555444 3455566788888877776666666666664 3566
Q ss_pred EEEEecc
Q 042003 213 VLIATDV 219 (248)
Q Consensus 213 ilv~T~~ 219 (248)
|++.|+.
T Consensus 83 ii~~s~~ 89 (140)
T 3grc_A 83 IVVVSAN 89 (140)
T ss_dssp EEEECTT
T ss_pred EEEEecC
Confidence 7777754
No 228
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP: e.22.1.2
Probab=46.43 E-value=91 Score=25.24 Aligned_cols=67 Identities=12% Similarity=0.073 Sum_probs=42.7
Q ss_pred HHHHHhccCCCCEEEEec-c-hH---HHHHHHHHhhcCCCeeEEEecCC---CHHHHHHHHHHhhcCCceEEEEe
Q 042003 151 LRQSFAESLNPPVLIFVQ-S-KE---RAKELYGELAFDGIRAGVIHSDL---SQTQRENAVDDFRAGKTWVLIAT 217 (248)
Q Consensus 151 l~~~~~~~~~~~~liF~~-~-~~---~~~~l~~~L~~~~~~v~~~~~~~---~~~~r~~~~~~f~~g~~~ilv~T 217 (248)
+.+.++....++++|.+. . .. ..+++.+.|++.++.+..+.+.. +.+.-.+..+.+++...+++|+-
T Consensus 34 l~~~l~~~g~~r~liVtd~~~~~~~g~~~~v~~~L~~~g~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIav 108 (407)
T 1vlj_A 34 IGEEIKNAGIRKVLFLYGGGSIKKNGVYDQVVDSLKKHGIEWVEVSGVKPNPVLSKVHEAVEVAKKEKVEAVLGV 108 (407)
T ss_dssp HHHHHHHTTCCEEEEEECSSHHHHSSHHHHHHHHHHHTTCEEEEECCCCSSCBHHHHHHHHHHHHHTTCSEEEEE
T ss_pred HHHHHHHcCCCeEEEEECchHHhhccHHHHHHHHHHHcCCeEEEecCccCCCCHHHHHHHHHHHHhcCCCEEEEe
Confidence 344444442367777775 2 23 36778888888788777766532 34555667777777777877754
No 229
>2ouc_A Dual specificity protein phosphatase 10; rhodanese fold, hydrolase; 2.20A {Homo sapiens}
Probab=46.39 E-value=7.6 Score=25.88 Aligned_cols=36 Identities=14% Similarity=0.282 Sum_probs=27.8
Q ss_pred CCCEEEEecchHH---------HHHHHHHhhcCCCeeEEEecCCC
Q 042003 160 NPPVLIFVQSKER---------AKELYGELAFDGIRAGVIHSDLS 195 (248)
Q Consensus 160 ~~~~liF~~~~~~---------~~~l~~~L~~~~~~v~~~~~~~~ 195 (248)
.+++++||.+-.. +..+++.|...|+++..+.||+.
T Consensus 83 ~~~ivvyc~~g~~~~~~~~~~~~~~~~~~L~~~G~~v~~l~GG~~ 127 (142)
T 2ouc_A 83 SKEIIVYDENTNEPSRVMPSQPLHIVLESLKREGKEPLVLKGGLS 127 (142)
T ss_dssp HSCEEEECSSCCCGGGCCTTSHHHHHHHHHHHTTCCCEEETTHHH
T ss_pred CCcEEEEECCCCchhhcCcccHHHHHHHHHHHcCCcEEEEccCHH
Confidence 4689999987554 34577788888889999999853
No 230
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=46.19 E-value=61 Score=27.57 Aligned_cols=49 Identities=10% Similarity=0.005 Sum_probs=26.7
Q ss_pred CCCCEEEEecchHHHHHHH-HHhhcCCCeeEEEecCCCHHHHHHHHHHhhcCCceEEEEecc
Q 042003 159 LNPPVLIFVQSKERAKELY-GELAFDGIRAGVIHSDLSQTQRENAVDDFRAGKTWVLIATDV 219 (248)
Q Consensus 159 ~~~~~liF~~~~~~~~~l~-~~L~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~ 219 (248)
..+++||.+++..-+.+.+ +.++..+..+..++++. ..+..+|+|+|.-
T Consensus 234 ~~~~vlil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~------------~~~~~~I~v~T~~ 283 (590)
T 3h1t_A 234 RKPRILFLADRNVLVDDPKDKTFTPFGDARHKIEGGK------------VVKSREIYFAIYQ 283 (590)
T ss_dssp SCCCEEEEEC-----------CCTTTCSSEEECCC--------------CCSSCSEEEEEGG
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHhcchhhhhhhccC------------CCCCCcEEEEEhh
Confidence 4679999999999999988 88887776666666432 2345678888853
No 231
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=46.02 E-value=26 Score=26.58 Aligned_cols=53 Identities=13% Similarity=0.059 Sum_probs=36.9
Q ss_pred CCCEEEEecchHHHHHHHHHhhcCC----CeeEEEecCCCHHHHHHHHHHhhcCCceEEEEecc
Q 042003 160 NPPVLIFVQSKERAKELYGELAFDG----IRAGVIHSDLSQTQRENAVDDFRAGKTWVLIATDV 219 (248)
Q Consensus 160 ~~~~liF~~~~~~~~~l~~~L~~~~----~~v~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~ 219 (248)
.+++++.++++.-+++.++.+++.+ ..+..++++.+... -..+...|+|+|.-
T Consensus 157 ~~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~I~v~T~~ 213 (282)
T 1rif_A 157 EGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDD-------KYKNDAPVVVGTWQ 213 (282)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHHTSCCGGGEEECSTTCSSTT-------CCCTTCSEEEECHH
T ss_pred CCeEEEEECCHHHHHHHHHHHHHhcccccceEEEEeCCCcchh-------hhccCCcEEEEchH
Confidence 4589999999999999998887653 25566666654322 11245679999953
No 232
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=45.96 E-value=5.6 Score=27.95 Aligned_cols=71 Identities=11% Similarity=-0.066 Sum_probs=34.7
Q ss_pred CCCcEEEeChHHHHHHHhc----CCc-----ccCceeEEEEeccccccccCcccccchhHhhhCCCccceeEEEEeecCc
Q 042003 36 FSCDILISTPLRLRLAIRR----KKI-----DLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPD 106 (248)
Q Consensus 36 ~~~~i~v~Tp~~l~~~~~~----~~~-----~~~~~~~lIiDEah~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~ 106 (248)
.+..+++.+...+...+.. ... .+.+.+++|+||++....+......+..++.........+++.|-..+.
T Consensus 66 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~~ 145 (180)
T 3ec2_A 66 KGIRGYFFDTKDLIFRLKHLMDEGKDTKFLKTVLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSLQ 145 (180)
T ss_dssp SCCCCCEEEHHHHHHHHHHHHHHTCCSHHHHHHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCSC
T ss_pred cCCeEEEEEHHHHHHHHHHHhcCchHHHHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCChh
Confidence 3555666665555444321 111 2446789999999854322112334444444322223444554444443
No 233
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=45.73 E-value=11 Score=29.61 Aligned_cols=43 Identities=12% Similarity=0.235 Sum_probs=24.6
Q ss_pred CceeEEEEeccccccccCcccccchhHhhhCCCccceeEEEEeecC
Q 042003 60 SRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLP 105 (248)
Q Consensus 60 ~~~~~lIiDEah~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~ 105 (248)
.+.+++|+||+|.+.. . ....+...+.. .+....+|+.|..+.
T Consensus 133 ~~~~vlilDE~~~L~~-~-~~~~L~~~le~-~~~~~~~Il~t~~~~ 175 (354)
T 1sxj_E 133 HRYKCVIINEANSLTK-D-AQAALRRTMEK-YSKNIRLIMVCDSMS 175 (354)
T ss_dssp -CCEEEEEECTTSSCH-H-HHHHHHHHHHH-STTTEEEEEEESCSC
T ss_pred CCCeEEEEeCccccCH-H-HHHHHHHHHHh-hcCCCEEEEEeCCHH
Confidence 4677999999999543 2 33444444444 233455555554433
No 234
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=45.61 E-value=26 Score=25.83 Aligned_cols=35 Identities=9% Similarity=0.019 Sum_probs=23.6
Q ss_pred cEEEeChHHHHHHHhcCCcccCceeEEEEecccccc
Q 042003 39 DILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLF 74 (248)
Q Consensus 39 ~i~v~Tp~~l~~~~~~~~~~~~~~~~lIiDEah~~~ 74 (248)
.+-+.+...++..+.... .-.+.++|||||++.+.
T Consensus 68 ~~~~~~~~~i~~~i~~~~-~~~~~dvViIDEaQ~l~ 102 (223)
T 2b8t_A 68 SVEVESAPEILNYIMSNS-FNDETKVIGIDEVQFFD 102 (223)
T ss_dssp CEEESSTHHHHHHHHSTT-SCTTCCEEEECSGGGSC
T ss_pred ccccCCHHHHHHHHHHHh-hCCCCCEEEEecCccCc
Confidence 455667777776665432 22457899999999753
No 235
>3olh_A MST, 3-mercaptopyruvate sulfurtransferase; structural genomics, structural genomics consortium, SGC, RH fold; 2.50A {Homo sapiens}
Probab=45.60 E-value=13 Score=28.91 Aligned_cols=36 Identities=11% Similarity=0.012 Sum_probs=30.3
Q ss_pred CCCEEEEecchHHHHHHHHHhhcCCC-eeEEEecCCC
Q 042003 160 NPPVLIFVQSKERAKELYGELAFDGI-RAGVIHSDLS 195 (248)
Q Consensus 160 ~~~~liF~~~~~~~~~l~~~L~~~~~-~v~~~~~~~~ 195 (248)
++++++||.+-..+...+..|+..|+ ++..+.|++.
T Consensus 254 ~~~iv~yC~sG~rs~~a~~~L~~~G~~~v~~~~Gg~~ 290 (302)
T 3olh_A 254 SKPLVATCGSGVTACHVALGAYLCGKPDVPIYDGSWV 290 (302)
T ss_dssp TSCEEEECSSSSTTHHHHHHHHTTTCCCCCEESSHHH
T ss_pred CCCEEEECCChHHHHHHHHHHHHcCCCCeeEeCCcHH
Confidence 57899999998788888888999998 6888888854
No 236
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=45.55 E-value=38 Score=26.49 Aligned_cols=63 Identities=8% Similarity=0.062 Sum_probs=31.7
Q ss_pred cCceeEEEEecccc-ccccCcccccchhHhhhCCCccceeEEEEeecCch--HHHHHHHhcCCcEEEEE
Q 042003 59 LSRVEYLVLDEADK-LFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPDF--VEELARSIMHDAVRVIV 124 (248)
Q Consensus 59 ~~~~~~lIiDEah~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~--~~~~~~~~~~~~~~~~~ 124 (248)
+.+.+++|+||+|. +... ..+.+...++. .+....+|+.+.++++. ...+...+.+....+..
T Consensus 74 f~~~kvvii~~~~~kl~~~--~~~aLl~~le~-p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~ 139 (343)
T 1jr3_D 74 FASRQTLLLLLPENGPNAA--INEQLLTLTGL-LHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTC 139 (343)
T ss_dssp CCSCEEEEEECCSSCCCTT--HHHHHHHHHTT-CBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEE
T ss_pred ccCCeEEEEECCCCCCChH--HHHHHHHHHhc-CCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEe
Confidence 56788999999998 6442 23333344443 23344444444333321 22344444444444443
No 237
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=45.42 E-value=56 Score=20.68 Aligned_cols=78 Identities=12% Similarity=0.065 Sum_probs=44.1
Q ss_pred EEEEcCCchhHHHHHHHHHhccCCCCEEEEecchHHHHHHHHHhhcCCCeeEEEecCCCHHHHHHHHHHhhc--CCceEE
Q 042003 137 KLVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKERAKELYGELAFDGIRAGVIHSDLSQTQRENAVDDFRA--GKTWVL 214 (248)
Q Consensus 137 ~~~~~~~~~~~~~~l~~~~~~~~~~~~liF~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~r~~~~~~f~~--g~~~il 214 (248)
.++.++++......+...++.. +-. ++.+.+..++ .+.++...+.+.++.-.++...-.+.++.+++ ....++
T Consensus 9 ~ilivdd~~~~~~~l~~~L~~~-g~~-v~~~~~~~~a---~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii 83 (130)
T 3eod_A 9 QILIVEDEQVFRSLLDSWFSSL-GAT-TVLAADGVDA---LELLGGFTPDLMICDIAMPRMNGLKLLEHIRNRGDQTPVL 83 (130)
T ss_dssp EEEEECSCHHHHHHHHHHHHHT-TCE-EEEESCHHHH---HHHHTTCCCSEEEECCC-----CHHHHHHHHHTTCCCCEE
T ss_pred eEEEEeCCHHHHHHHHHHHHhC-Cce-EEEeCCHHHH---HHHHhcCCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEE
Confidence 4556677777777788877775 333 4445554444 33455666788888777766555566665554 245566
Q ss_pred EEecc
Q 042003 215 IATDV 219 (248)
Q Consensus 215 v~T~~ 219 (248)
+.|..
T Consensus 84 ~~t~~ 88 (130)
T 3eod_A 84 VISAT 88 (130)
T ss_dssp EEECC
T ss_pred EEEcC
Confidence 66643
No 238
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=44.88 E-value=27 Score=26.75 Aligned_cols=16 Identities=38% Similarity=0.511 Sum_probs=13.3
Q ss_pred CceeEEEEeccccccc
Q 042003 60 SRVEYLVLDEADKLFE 75 (248)
Q Consensus 60 ~~~~~lIiDEah~~~~ 75 (248)
.+.+++|+||+|.+..
T Consensus 101 ~~~~vliiDe~~~l~~ 116 (319)
T 2chq_A 101 APFKIIFLDEADALTA 116 (319)
T ss_dssp CCCEEEEEETGGGSCH
T ss_pred CCceEEEEeCCCcCCH
Confidence 4578999999999864
No 239
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=44.48 E-value=8.4 Score=31.79 Aligned_cols=66 Identities=11% Similarity=0.145 Sum_probs=33.9
Q ss_pred CCcEEEeChHHHHHHHh----cCCc-----ccC-ceeEEEEeccccccccCcccccchhHhhhCCCccceeEEEEe
Q 042003 37 SCDILISTPLRLRLAIR----RKKI-----DLS-RVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSA 102 (248)
Q Consensus 37 ~~~i~v~Tp~~l~~~~~----~~~~-----~~~-~~~~lIiDEah~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SA 102 (248)
+..++..+...+...+. .... .+. +.+++++||+|.+.........+...+........++++.|.
T Consensus 160 ~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~ 235 (440)
T 2z4s_A 160 DLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSD 235 (440)
T ss_dssp SSCEEEEEHHHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred CCeEEEeeHHHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEEC
Confidence 56677777655543222 2111 123 678999999999875311223333333322233455555443
No 240
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=44.11 E-value=62 Score=20.82 Aligned_cols=79 Identities=6% Similarity=0.026 Sum_probs=48.6
Q ss_pred EEEEcCCchhHHHHHHHHHhccCCCCEEEEecchHHHHHHHHHhhcCCCeeEEEecCCCHHHHHHHHHHhhc----CCce
Q 042003 137 KLVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKERAKELYGELAFDGIRAGVIHSDLSQTQRENAVDDFRA----GKTW 212 (248)
Q Consensus 137 ~~~~~~~~~~~~~~l~~~~~~~~~~~~liF~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~r~~~~~~f~~----g~~~ 212 (248)
.++.++++......+...++.. + -.+..+.+..++.. .++...+.+.++.-.++...-.+.++.+++ ....
T Consensus 9 ~iLivdd~~~~~~~l~~~L~~~-g-~~v~~~~~~~~a~~---~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~p 83 (142)
T 3cg4_A 9 DVMIVDDDAHVRIAVKTILSDA-G-FHIISADSGGQCID---LLKKGFSGVVLLDIMMPGMDGWDTIRAILDNSLEQGIA 83 (142)
T ss_dssp EEEEECSCHHHHHHHHHHHHHT-T-CEEEEESSHHHHHH---HHHTCCCEEEEEESCCSSSCHHHHHHHHHHTTCCTTEE
T ss_pred eEEEEcCCHHHHHHHHHHHHHC-C-eEEEEeCCHHHHHH---HHHhcCCCEEEEeCCCCCCCHHHHHHHHHhhcccCCCC
Confidence 3555677777777888888765 2 23555666554443 445556788888776665445556666654 3456
Q ss_pred EEEEeccc
Q 042003 213 VLIATDVI 220 (248)
Q Consensus 213 ilv~T~~~ 220 (248)
|++.|+..
T Consensus 84 ii~~s~~~ 91 (142)
T 3cg4_A 84 IVMLTAKN 91 (142)
T ss_dssp EEEEECTT
T ss_pred EEEEECCC
Confidence 77666543
No 241
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=44.02 E-value=67 Score=21.23 Aligned_cols=77 Identities=9% Similarity=0.011 Sum_probs=48.1
Q ss_pred EEEEcCCchhHHHHHHHHHhccCCCCEEEEecchHHHHHHHHHhhcCCCeeEEEecCCCHHHHHHHHHHhhc----CCce
Q 042003 137 KLVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKERAKELYGELAFDGIRAGVIHSDLSQTQRENAVDDFRA----GKTW 212 (248)
Q Consensus 137 ~~~~~~~~~~~~~~l~~~~~~~~~~~~liF~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~r~~~~~~f~~----g~~~ 212 (248)
.++.++++......+..+++.. +- .+..+.+..++. +.+....+.+.++.-.++..+-.+.++.+++ ....
T Consensus 9 ~ILivdd~~~~~~~l~~~L~~~-g~-~v~~~~~~~~al---~~l~~~~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~p 83 (154)
T 3gt7_A 9 EILIVEDSPTQAEHLKHILEET-GY-QTEHVRNGREAV---RFLSLTRPDLIISDVLMPEMDGYALCRWLKGQPDLRTIP 83 (154)
T ss_dssp EEEEECSCHHHHHHHHHHHHTT-TC-EEEEESSHHHHH---HHHTTCCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSC
T ss_pred cEEEEeCCHHHHHHHHHHHHHC-CC-EEEEeCCHHHHH---HHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCCCcCCCC
Confidence 4556777777778888888765 22 344455544443 3455566788888877766555666666654 3456
Q ss_pred EEEEec
Q 042003 213 VLIATD 218 (248)
Q Consensus 213 ilv~T~ 218 (248)
|++.|.
T Consensus 84 ii~~s~ 89 (154)
T 3gt7_A 84 VILLTI 89 (154)
T ss_dssp EEEEEC
T ss_pred EEEEEC
Confidence 666664
No 242
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=43.90 E-value=6.2 Score=30.82 Aligned_cols=39 Identities=21% Similarity=0.249 Sum_probs=23.7
Q ss_pred CCcEEEeChHHHHHHHhc----CCc-----ccCceeEEEEeccccccc
Q 042003 37 SCDILISTPLRLRLAIRR----KKI-----DLSRVEYLVLDEADKLFE 75 (248)
Q Consensus 37 ~~~i~v~Tp~~l~~~~~~----~~~-----~~~~~~~lIiDEah~~~~ 75 (248)
+..++..+...+...+.. ... ...+.+++++||+|.+..
T Consensus 65 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~iDEi~~l~~ 112 (324)
T 1l8q_A 65 GYRVIYSSADDFAQAMVEHLKKGTINEFRNMYKSVDLLLLDDVQFLSG 112 (324)
T ss_dssp TCCEEEEEHHHHHHHHHHHHHHTCHHHHHHHHHTCSEEEEECGGGGTT
T ss_pred CCEEEEEEHHHHHHHHHHHHHcCcHHHHHHHhcCCCEEEEcCcccccC
Confidence 567777776655433221 111 123467999999999865
No 243
>2fp3_A Caspase NC; apoptosis, initiator caspase activation, dimerization, active site conformation, hydrolysis/apoptosis complex; 2.50A {Drosophila melanogaster}
Probab=43.80 E-value=55 Score=25.61 Aligned_cols=48 Identities=10% Similarity=-0.047 Sum_probs=38.6
Q ss_pred CCCEEEEecc------------hHHHHHHHHHhhcCCCeeEEEecCCCHHHHHHHHHHhhc
Q 042003 160 NPPVLIFVQS------------KERAKELYGELAFDGIRAGVIHSDLSQTQRENAVDDFRA 208 (248)
Q Consensus 160 ~~~~liF~~~------------~~~~~~l~~~L~~~~~~v~~~~~~~~~~~r~~~~~~f~~ 208 (248)
.+-+|||.|. ..+++.+.+.|+..|+.|. ++..++.++-.+.++.|.+
T Consensus 61 rg~aLIInN~~F~~~~~~R~Gt~~D~~~L~~~f~~LGF~V~-~~~dlt~~em~~~l~~f~~ 120 (316)
T 2fp3_A 61 RGVLLMVNIMDYPDQNRRRIGAEKDSKSLIHLFQELNFTIF-PYGNVNQDQFFKLLTMVTS 120 (316)
T ss_dssp SEEEEEEECCCCSSTTSCCTTHHHHHHHHHHHHHHTTEEEE-EECSCCHHHHHHHHHHHHT
T ss_pred CcEEEEEeCcccCCCCCCCCCcHHHHHHHHHHHHHCCCEEE-EccCCCHHHHHHHHHHHHH
Confidence 3567788765 3789999999999999985 5677888888888888854
No 244
>3mwd_B ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_B*
Probab=43.47 E-value=39 Score=26.74 Aligned_cols=52 Identities=8% Similarity=0.130 Sum_probs=38.5
Q ss_pred CCEEEEecchHHHHHHHHHhhcCCCeeE-EEecCCCHHHHHHHHHHhhcCCce
Q 042003 161 PPVLIFVQSKERAKELYGELAFDGIRAG-VIHSDLSQTQRENAVDDFRAGKTW 212 (248)
Q Consensus 161 ~~~liF~~~~~~~~~l~~~L~~~~~~v~-~~~~~~~~~~r~~~~~~f~~g~~~ 212 (248)
.=++||++-......+.+.+.+.+++.. .+..+++.++..++.+.-++...+
T Consensus 81 DlaVi~vp~~~a~~ai~ea~~~~Gv~~vViiT~G~~e~~~~~l~~~a~~~g~r 133 (334)
T 3mwd_B 81 DVLINFASLRSAYDSTMETMNYAQIRTIAIIAEGIPEALTRKLIKKADQKGVT 133 (334)
T ss_dssp CEEEECCCTTTHHHHHHHHTTSTTCCEEEECCSCCCHHHHHHHHHHHHHHTCE
T ss_pred cEEEEecCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCE
Confidence 5677888887777888889987888654 458999987777776666655543
No 245
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=43.39 E-value=57 Score=20.65 Aligned_cols=77 Identities=6% Similarity=0.088 Sum_probs=48.4
Q ss_pred EEEEcCCchhHHHHHHHHHhccCCCCEEEEecchHHHHHHHHHhhcCCCeeEEEecCCCHHHHHHHHHHhhcC----Cce
Q 042003 137 KLVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKERAKELYGELAFDGIRAGVIHSDLSQTQRENAVDDFRAG----KTW 212 (248)
Q Consensus 137 ~~~~~~~~~~~~~~l~~~~~~~~~~~~liF~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~r~~~~~~f~~g----~~~ 212 (248)
.++.++++......+..+++.. +-.+..+.+..++. +.+....+.+.++.-.++...-.+.++.+++. ...
T Consensus 8 ~ilivdd~~~~~~~l~~~L~~~--g~~v~~~~~~~~a~---~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~~ 82 (132)
T 3lte_A 8 RILVVDDDQAMAAAIERVLKRD--HWQVEIAHNGFDAG---IKLSTFEPAIMTLDLSMPKLDGLDVIRSLRQNKVANQPK 82 (132)
T ss_dssp EEEEECSCHHHHHHHHHHHHHT--TCEEEEESSHHHHH---HHHHHTCCSEEEEESCBTTBCHHHHHHHHHTTTCSSCCE
T ss_pred cEEEEECCHHHHHHHHHHHHHC--CcEEEEeCCHHHHH---HHHHhcCCCEEEEecCCCCCCHHHHHHHHHhcCccCCCe
Confidence 4556677777777788888764 23444555555443 34455667888888777766666667666643 345
Q ss_pred EEEEec
Q 042003 213 VLIATD 218 (248)
Q Consensus 213 ilv~T~ 218 (248)
|++.|.
T Consensus 83 ii~~~~ 88 (132)
T 3lte_A 83 ILVVSG 88 (132)
T ss_dssp EEEECC
T ss_pred EEEEeC
Confidence 666664
No 246
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=42.85 E-value=16 Score=26.52 Aligned_cols=50 Identities=14% Similarity=0.119 Sum_probs=27.8
Q ss_pred CceeEEEEeccccccccCcccc--cchhHhhhCCCccceeEEEEeecCchHHHH
Q 042003 60 SRVEYLVLDEADKLFEVGNLLK--HIDPVVKACSNPSIVRSLFSATLPDFVEEL 111 (248)
Q Consensus 60 ~~~~~lIiDEah~~~~~~~~~~--~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~ 111 (248)
..+++||+||+-.....+ +.. .+..++.. .+....+|+.+--.|+.+.+.
T Consensus 119 ~~yDlvILDEi~~al~~g-~l~~~ev~~~l~~-Rp~~~~vIlTGr~ap~~l~e~ 170 (196)
T 1g5t_A 119 PLLDMVVLDELTYMVAYD-YLPLEEVISALNA-RPGHQTVIITGRGCHRDILDL 170 (196)
T ss_dssp TTCSEEEEETHHHHHHTT-SSCHHHHHHHHHT-SCTTCEEEEECSSCCHHHHHH
T ss_pred CCCCEEEEeCCCccccCC-CCCHHHHHHHHHh-CcCCCEEEEECCCCcHHHHHh
Confidence 678999999996654443 222 23333433 344455555555555544443
No 247
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=42.41 E-value=16 Score=28.11 Aligned_cols=38 Identities=16% Similarity=0.187 Sum_probs=23.1
Q ss_pred ceeEEEEeccccccccCcccccchhHhhhCCCccceeEEEE
Q 042003 61 RVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFS 101 (248)
Q Consensus 61 ~~~~lIiDEah~~~~~~~~~~~~~~~~~~~~~~~~~~i~~S 101 (248)
+..++|+||+|.+.... ...+...+.. .+....++++|
T Consensus 107 ~~~viiiDe~~~l~~~~--~~~L~~~le~-~~~~~~~il~~ 144 (323)
T 1sxj_B 107 KHKIVILDEADSMTAGA--QQALRRTMEL-YSNSTRFAFAC 144 (323)
T ss_dssp CCEEEEEESGGGSCHHH--HHTTHHHHHH-TTTTEEEEEEE
T ss_pred CceEEEEECcccCCHHH--HHHHHHHHhc-cCCCceEEEEe
Confidence 47899999999986532 3344444444 33445555544
No 248
>2eg4_A Probable thiosulfate sulfurtransferase; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 1.70A {Thermus thermophilus} PDB: 2eg3_A
Probab=42.25 E-value=20 Score=26.37 Aligned_cols=33 Identities=15% Similarity=0.093 Sum_probs=28.6
Q ss_pred CCCEEEEecchH-HHHHHHHHhhcCCC-eeEEEecC
Q 042003 160 NPPVLIFVQSKE-RAKELYGELAFDGI-RAGVIHSD 193 (248)
Q Consensus 160 ~~~~liF~~~~~-~~~~l~~~L~~~~~-~v~~~~~~ 193 (248)
+.++++||.+-. .+..++..|+ .|+ ++..+.||
T Consensus 61 ~~~ivvyc~~g~~~s~~a~~~L~-~G~~~v~~l~GG 95 (230)
T 2eg4_A 61 RSPVVLYDEGLTSRLCRTAFFLG-LGGLEVQLWTEG 95 (230)
T ss_dssp CSSEEEECSSSCHHHHHHHHHHH-HTTCCEEEECSS
T ss_pred CCEEEEEcCCCCccHHHHHHHHH-cCCceEEEeCCC
Confidence 578999998876 8888999999 998 48899998
No 249
>3p45_A Caspase-6; protease, huntington'S disease, physio PH, competitive inhibition, hydrolase; 2.53A {Homo sapiens}
Probab=42.25 E-value=82 Score=22.34 Aligned_cols=48 Identities=15% Similarity=0.152 Sum_probs=38.1
Q ss_pred CCCEEEEecc--------------hHHHHHHHHHhhcCCCeeEEEecCCCHHHHHHHHHHhhc
Q 042003 160 NPPVLIFVQS--------------KERAKELYGELAFDGIRAGVIHSDLSQTQRENAVDDFRA 208 (248)
Q Consensus 160 ~~~~liF~~~--------------~~~~~~l~~~L~~~~~~v~~~~~~~~~~~r~~~~~~f~~ 208 (248)
.+.+|||.+. ...++.+.+.|+..|+.|.++ ..++.++-.+.++.|.+
T Consensus 44 rG~aLIinn~~F~~~~~l~~R~Gt~~D~~~L~~~F~~LGF~V~~~-~dlt~~em~~~l~~~~~ 105 (179)
T 3p45_A 44 RGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCF-NDLKAEELLLKIHEVST 105 (179)
T ss_dssp CCEEEEEECCSCCGGGCCCCCTTHHHHHHHHHHHHHHTTCEEEEE-ESCCHHHHHHHHHHHHT
T ss_pred cCEEEEEeCcccCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEE-eCCCHHHHHHHHHHHhh
Confidence 3568888764 368899999999999998665 56888888888888865
No 250
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=42.20 E-value=9.8 Score=27.56 Aligned_cols=14 Identities=21% Similarity=0.237 Sum_probs=12.3
Q ss_pred CceeEEEEeccccc
Q 042003 60 SRVEYLVLDEADKL 73 (248)
Q Consensus 60 ~~~~~lIiDEah~~ 73 (248)
+++++|+|||+|-+
T Consensus 90 ~~~DvIlIDEaQFf 103 (195)
T 1w4r_A 90 LGVAVIGIDEGQFF 103 (195)
T ss_dssp HTCSEEEESSGGGC
T ss_pred cCCCEEEEEchhhh
Confidence 45789999999997
No 251
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=42.14 E-value=62 Score=20.23 Aligned_cols=77 Identities=9% Similarity=0.011 Sum_probs=48.9
Q ss_pred EEEEcCCchhHHHHHHHHHhccCCCCEEEEecchHHHHHHHHHhhcCCCeeEEEecCCCHHHHHHHHHHhhcC-CceEEE
Q 042003 137 KLVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKERAKELYGELAFDGIRAGVIHSDLSQTQRENAVDDFRAG-KTWVLI 215 (248)
Q Consensus 137 ~~~~~~~~~~~~~~l~~~~~~~~~~~~liF~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~r~~~~~~f~~g-~~~ilv 215 (248)
.++.++++......+...++.. + -.+..+.+..++. +.++...+.+.++.-.|+..+-.+.++.+++. ...+++
T Consensus 4 ~ilivdd~~~~~~~l~~~L~~~-g-~~v~~~~~~~~al---~~~~~~~~dlii~D~~~p~~~g~~~~~~lr~~~~~~ii~ 78 (120)
T 3f6p_A 4 KILVVDDEKPIADILEFNLRKE-G-YEVHCAHDGNEAV---EMVEELQPDLILLDIMLPNKDGVEVCREVRKKYDMPIIM 78 (120)
T ss_dssp EEEEECSCHHHHHHHHHHHHHT-T-CEEEEESSHHHHH---HHHHTTCCSEEEEETTSTTTHHHHHHHHHHTTCCSCEEE
T ss_pred eEEEEECCHHHHHHHHHHHHhC-C-EEEEEeCCHHHHH---HHHhhCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCEEE
Confidence 3555677776777777777764 3 3344555555443 34556677888888888877777777766643 345665
Q ss_pred Eec
Q 042003 216 ATD 218 (248)
Q Consensus 216 ~T~ 218 (248)
.|.
T Consensus 79 ~t~ 81 (120)
T 3f6p_A 79 LTA 81 (120)
T ss_dssp EEE
T ss_pred EEC
Confidence 554
No 252
>2wlr_A Putative thiosulfate sulfurtransferase YNJE; rhodanese domains; HET: EPE; 1.45A {Escherichia coli} PDB: 2wlx_A* 3ipo_A* 3ipp_A
Probab=41.94 E-value=28 Score=28.40 Aligned_cols=36 Identities=8% Similarity=0.265 Sum_probs=30.7
Q ss_pred CCCEEEEecchHHHHHHHHHhhcCCC-eeEEEecCCC
Q 042003 160 NPPVLIFVQSKERAKELYGELAFDGI-RAGVIHSDLS 195 (248)
Q Consensus 160 ~~~~liF~~~~~~~~~l~~~L~~~~~-~v~~~~~~~~ 195 (248)
++++++||.+-..+..++..|+..|+ ++..+.|+++
T Consensus 203 ~~~ivvyC~~G~~a~~~~~~L~~~G~~~v~~l~Gg~~ 239 (423)
T 2wlr_A 203 DTTVILYGRDVYAAARVAQIMLYAGVKDVRLLDGGWQ 239 (423)
T ss_dssp TSEEEEECSSHHHHHHHHHHHHHHTCSCEEEETTTHH
T ss_pred CCeEEEECCCchHHHHHHHHHHHcCCCCeEEECCCHH
Confidence 56899999998888899999998888 6888988753
No 253
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=41.85 E-value=12 Score=31.61 Aligned_cols=43 Identities=14% Similarity=0.178 Sum_probs=24.9
Q ss_pred CceeEEEEeccccccccCcccccchhHhhhCCCccceeEEEEeec
Q 042003 60 SRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATL 104 (248)
Q Consensus 60 ~~~~~lIiDEah~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~ 104 (248)
..-.++++||+|.+.... ...+..+...+......+++++++.
T Consensus 147 ~~~~vliIDEid~l~~~~--~~~l~~L~~~l~~~~~~iIli~~~~ 189 (516)
T 1sxj_A 147 GKHFVIIMDEVDGMSGGD--RGGVGQLAQFCRKTSTPLILICNER 189 (516)
T ss_dssp TTSEEEEECSGGGCCTTS--TTHHHHHHHHHHHCSSCEEEEESCT
T ss_pred CCCeEEEEECCCccchhh--HHHHHHHHHHHHhcCCCEEEEEcCC
Confidence 345799999999987532 2222333333222345577777764
No 254
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=41.79 E-value=68 Score=20.64 Aligned_cols=76 Identities=13% Similarity=0.171 Sum_probs=47.6
Q ss_pred EEEcCCchhHHHHHHHHHhccCCCCEEEEecchHHHHHHHHHhhcCCCeeEEEecCCCHHHHHHHHHHhhc--CCceEEE
Q 042003 138 LVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKERAKELYGELAFDGIRAGVIHSDLSQTQRENAVDDFRA--GKTWVLI 215 (248)
Q Consensus 138 ~~~~~~~~~~~~~l~~~~~~~~~~~~liF~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~r~~~~~~f~~--g~~~ilv 215 (248)
++.++++......+...++.. +- .++.+.+..++. +.+....+.+.++.- ++...-.+.++.+++ ....+++
T Consensus 7 iLivdd~~~~~~~l~~~L~~~-g~-~v~~~~~~~~a~---~~l~~~~~dlvi~d~-~~~~~g~~~~~~l~~~~~~~pii~ 80 (142)
T 2qxy_A 7 VMVVDESRITFLAVKNALEKD-GF-NVIWAKNEQEAF---TFLRREKIDLVFVDV-FEGEESLNLIRRIREEFPDTKVAV 80 (142)
T ss_dssp EEEECSCHHHHHHHHHHHGGG-TC-EEEEESSHHHHH---HHHTTSCCSEEEEEC-TTTHHHHHHHHHHHHHCTTCEEEE
T ss_pred EEEEeCCHHHHHHHHHHHHhC-CC-EEEEECCHHHHH---HHHhccCCCEEEEeC-CCCCcHHHHHHHHHHHCCCCCEEE
Confidence 455667777777888888764 33 344555554444 445556778888887 776666666666653 2456666
Q ss_pred Eecc
Q 042003 216 ATDV 219 (248)
Q Consensus 216 ~T~~ 219 (248)
.|+.
T Consensus 81 ls~~ 84 (142)
T 2qxy_A 81 LSAY 84 (142)
T ss_dssp EESC
T ss_pred EECC
Confidence 6643
No 255
>1jbw_A Folylpolyglutamate synthase; FPGS folate AMPPCP ternary complex, ligase; HET: KCX ACQ TMF; 1.85A {Lactobacillus casei} SCOP: c.59.1.2 c.72.2.2 PDB: 1fgs_A* 1jbv_A* 2gca_A 2gc5_A* 2gc6_A* 2gcb_A
Probab=41.13 E-value=80 Score=25.69 Aligned_cols=111 Identities=12% Similarity=0.040 Sum_probs=47.6
Q ss_pred EEEEeccccccccCcccccchhHhhhCCCccceeEEEEeecCchHHHHHHHhcCCcEEEEE-cc-cc-cc--cccceeEE
Q 042003 64 YLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLPDFVEELARSIMHDAVRVIV-GR-KN-TA--SESIKQKL 138 (248)
Q Consensus 64 ~lIiDEah~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~-~~-~~-~~--~~~~~~~~ 138 (248)
.+++|.||. +.+....+..+.... + ...++.+...-......+..........+.. .. .. .. ...+...
T Consensus 309 ~viiD~AhN---p~s~~a~l~~l~~~~-~-~~~i~V~g~~~~kd~~~~~~~~~~~~d~vi~~~~~~~~r~~~~~~l~~~- 382 (428)
T 1jbw_A 309 LIVIDGAHN---PDGINGLITALKQLF-S-QPITVIAGILADKDYAAMADRLTAAFSTVYLVPVPGTPRALPEAGYEAL- 382 (428)
T ss_dssp TEEEECCCS---HHHHHHHHHHHHHHC-S-SCCEEEEECSSSTTHHHHHHHHHHHCSEEEECCCSCC-------------
T ss_pred cEEEECCcC---HHHHHHHHHHHHHhc-C-CCEEEEEeeCCCCCHHHHHHHHhhhCCEEEEECCCCCCCCCCHHHHHhh-
Confidence 489999993 333555555554442 2 2334555555444444444433221222222 22 11 11 1111111
Q ss_pred EEcCCchhHHHHHHHHHhccCCCCEEEEecchHHHHHHHHHhh
Q 042003 139 VFAGSEEGKLLALRQSFAESLNPPVLIFVQSKERAKELYGELA 181 (248)
Q Consensus 139 ~~~~~~~~~~~~l~~~~~~~~~~~~liF~~~~~~~~~l~~~L~ 181 (248)
......++..+.+...++.. ++.+|+++.|...+..+.+.|+
T Consensus 383 ~~~~~~~~~~~ai~~a~~~~-~~d~vLv~GS~~~~~~~~~~l~ 424 (428)
T 1jbw_A 383 HEGRLKDSWQEALAASLNDV-PDQPIVITGSLYLASAVRQTLL 424 (428)
T ss_dssp ---CBCSSHHHHHHHHHHHC-TTSCEEEEESHHHHHHHHHHHT
T ss_pred hCCeecCCHHHHHHHHHhhC-CCCeEEEEeeHHHHHHHHHHHh
Confidence 00111122333333333333 4556667788777777666654
No 256
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=41.09 E-value=15 Score=26.55 Aligned_cols=16 Identities=25% Similarity=0.395 Sum_probs=12.4
Q ss_pred CceeEEEEeccccccc
Q 042003 60 SRVEYLVLDEADKLFE 75 (248)
Q Consensus 60 ~~~~~lIiDEah~~~~ 75 (248)
..-.++|+||+|.+..
T Consensus 125 ~~~~vlviDe~~~l~~ 140 (250)
T 1njg_A 125 GRFKVYLIDEVHMLSR 140 (250)
T ss_dssp SSSEEEEEETGGGSCH
T ss_pred CCceEEEEECcccccH
Confidence 3457999999999753
No 257
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=40.95 E-value=52 Score=20.71 Aligned_cols=80 Identities=14% Similarity=0.102 Sum_probs=49.1
Q ss_pred EEEEcCCchhHHHHHHHHHhccCCCCEEEEecchHHHHHHHHHhhcCCCeeEEEecCCCHHHHHHHHHHhhc----CCce
Q 042003 137 KLVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKERAKELYGELAFDGIRAGVIHSDLSQTQRENAVDDFRA----GKTW 212 (248)
Q Consensus 137 ~~~~~~~~~~~~~~l~~~~~~~~~~~~liF~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~r~~~~~~f~~----g~~~ 212 (248)
.++.++++......+..+++.. +- .+..+.+..++. +.++...+.+.++.-.++..+-.+.++.+++ ....
T Consensus 5 ~ilivdd~~~~~~~l~~~L~~~-g~-~v~~~~~~~~a~---~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~~~ 79 (127)
T 3i42_A 5 QALIVEDYQAAAETFKELLEML-GF-QADYVMSGTDAL---HAMSTRGYDAVFIDLNLPDTSGLALVKQLRALPMEKTSK 79 (127)
T ss_dssp EEEEECSCHHHHHHHHHHHHHT-TE-EEEEESSHHHHH---HHHHHSCCSEEEEESBCSSSBHHHHHHHHHHSCCSSCCE
T ss_pred eEEEEcCCHHHHHHHHHHHHHc-CC-CEEEECCHHHHH---HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhhhccCCCC
Confidence 3455677777777888888775 22 444555544443 3455566788888877766555666666654 3456
Q ss_pred EEEEecccc
Q 042003 213 VLIATDVIA 221 (248)
Q Consensus 213 ilv~T~~~~ 221 (248)
+++.|....
T Consensus 80 ii~~s~~~~ 88 (127)
T 3i42_A 80 FVAVSGFAK 88 (127)
T ss_dssp EEEEECC-C
T ss_pred EEEEECCcc
Confidence 777765543
No 258
>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A
Probab=40.91 E-value=59 Score=19.65 Aligned_cols=46 Identities=13% Similarity=0.098 Sum_probs=31.1
Q ss_pred CEEEEecc-------hHHHHHHHHHhhcCCCeeEEEecCCCHHHHHHHHHHhh
Q 042003 162 PVLIFVQS-------KERAKELYGELAFDGIRAGVIHSDLSQTQRENAVDDFR 207 (248)
Q Consensus 162 ~~liF~~~-------~~~~~~l~~~L~~~~~~v~~~~~~~~~~~r~~~~~~f~ 207 (248)
+++||..+ ++.+.++.+.|...++....+.=..+++.+++..+...
T Consensus 3 ~v~ly~~~~C~~c~~~~~~~~ak~~L~~~~i~~~~~di~~~~~~~~~l~~~~g 55 (93)
T 1t1v_A 3 GLRVYSTSVTGSREIKSQQSEVTRILDGKRIQYQLVDISQDNALRDEMRTLAG 55 (93)
T ss_dssp CEEEEECSSCSCHHHHHHHHHHHHHHHHTTCCCEEEETTSCHHHHHHHHHHTT
T ss_pred CEEEEEcCCCCCchhhHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHHhC
Confidence 45566533 34457888888888888777776666777766666554
No 259
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=40.78 E-value=20 Score=24.78 Aligned_cols=14 Identities=21% Similarity=0.282 Sum_probs=11.5
Q ss_pred eeEEEEeccccccc
Q 042003 62 VEYLVLDEADKLFE 75 (248)
Q Consensus 62 ~~~lIiDEah~~~~ 75 (248)
-.++++||+|.+..
T Consensus 116 ~~vl~iDe~~~l~~ 129 (195)
T 1jbk_A 116 NVILFIDELHTMVG 129 (195)
T ss_dssp TEEEEEETGGGGTT
T ss_pred CeEEEEeCHHHHhc
Confidence 45899999999863
No 260
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=40.68 E-value=68 Score=20.49 Aligned_cols=76 Identities=11% Similarity=0.114 Sum_probs=44.0
Q ss_pred EEEcCCchhHHHHHHHHHhccCCCCEEEEecchHHHHHHHHHhhcCCCeeEEEecCCC-----HHHHHHHHHHhhc--CC
Q 042003 138 LVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKERAKELYGELAFDGIRAGVIHSDLS-----QTQRENAVDDFRA--GK 210 (248)
Q Consensus 138 ~~~~~~~~~~~~~l~~~~~~~~~~~~liF~~~~~~~~~l~~~L~~~~~~v~~~~~~~~-----~~~r~~~~~~f~~--g~ 210 (248)
++.++++......+...++.. +- .+..+.+..++.. .+....+.+.++.-.++ ...-.+.++.+++ ..
T Consensus 6 ilivdd~~~~~~~l~~~L~~~-g~-~v~~~~~~~~a~~---~l~~~~~dlvi~d~~~~~~~~~~~~g~~~~~~l~~~~~~ 80 (140)
T 2qr3_A 6 IIIVDDNKGVLTAVQLLLKNH-FS-KVITLSSPVSLST---VLREENPEVVLLDMNFTSGINNGNEGLFWLHEIKRQYRD 80 (140)
T ss_dssp EEEECSCHHHHHHHHHHHTTT-SS-EEEEECCHHHHHH---HHHHSCEEEEEEETTTTC-----CCHHHHHHHHHHHCTT
T ss_pred EEEEeCCHHHHHHHHHHHHhC-Cc-EEEEeCCHHHHHH---HHHcCCCCEEEEeCCcCCCCCCCccHHHHHHHHHhhCcC
Confidence 455666666777788888765 33 4445555554443 44455678888877665 4444444544443 34
Q ss_pred ceEEEEec
Q 042003 211 TWVLIATD 218 (248)
Q Consensus 211 ~~ilv~T~ 218 (248)
..+++.|+
T Consensus 81 ~~ii~ls~ 88 (140)
T 2qr3_A 81 LPVVLFTA 88 (140)
T ss_dssp CCEEEEEE
T ss_pred CCEEEEEC
Confidence 55666654
No 261
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=39.98 E-value=19 Score=30.87 Aligned_cols=35 Identities=17% Similarity=0.245 Sum_probs=21.1
Q ss_pred CceeEEEEeccccccccCcccccchhHhhhCCCccceeEEE
Q 042003 60 SRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLF 100 (248)
Q Consensus 60 ~~~~~lIiDEah~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 100 (248)
...+++||||++++... .+..+++.+ +...+++++
T Consensus 278 ~~~dvlIIDEasml~~~-----~~~~Ll~~~-~~~~~lilv 312 (574)
T 3e1s_A 278 APYDLLIVDEVSMMGDA-----LMLSLLAAV-PPGARVLLV 312 (574)
T ss_dssp CSCSEEEECCGGGCCHH-----HHHHHHTTS-CTTCEEEEE
T ss_pred ccCCEEEEcCccCCCHH-----HHHHHHHhC-cCCCEEEEE
Confidence 35789999999987543 344444442 234454444
No 262
>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*
Probab=39.77 E-value=14 Score=31.25 Aligned_cols=36 Identities=25% Similarity=0.373 Sum_probs=32.0
Q ss_pred CCCEEEEecchHHHHHHHHHhhcCCCeeEEEecCCC
Q 042003 160 NPPVLIFVQSKERAKELYGELAFDGIRAGVIHSDLS 195 (248)
Q Consensus 160 ~~~~liF~~~~~~~~~l~~~L~~~~~~v~~~~~~~~ 195 (248)
++++++||.+-..+...+..|+..|+++..+.|++.
T Consensus 524 ~~~iv~~c~~g~rs~~a~~~l~~~G~~v~~l~gG~~ 559 (565)
T 3ntd_A 524 DKEIIIFSQVGLRGNVAYRQLVNNGYRARNLIGGYR 559 (565)
T ss_dssp TSEEEEECSSSHHHHHHHHHHHHTTCCEEEETTHHH
T ss_pred cCeEEEEeCCchHHHHHHHHHHHcCCCEEEEcChHH
Confidence 568999999988999999999999999999999864
No 263
>2j6p_A SB(V)-AS(V) reductase; arsenate reductase, antimonate reductase, CDC25 phosphatase, rhodanese, C-MYC epitope, oxidoreductase; HET: EPE; 2.15A {Leishmania major}
Probab=39.47 E-value=25 Score=23.96 Aligned_cols=36 Identities=19% Similarity=0.118 Sum_probs=22.3
Q ss_pred CCCEEEE-e-cchHHHH----HHHHHhhcCCC---eeEEEecCCC
Q 042003 160 NPPVLIF-V-QSKERAK----ELYGELAFDGI---RAGVIHSDLS 195 (248)
Q Consensus 160 ~~~~liF-~-~~~~~~~----~l~~~L~~~~~---~v~~~~~~~~ 195 (248)
+++.+|| | .+-..+. .+...|+..|+ .+..+.||+.
T Consensus 67 ~~~~vV~yC~~sg~rs~~aa~~~~~~L~~~G~~~~~v~~L~GG~~ 111 (152)
T 2j6p_A 67 KKELAVFHCAQSLVRAPKGANRFALAQKKLGYVLPAVYVLRGGWE 111 (152)
T ss_dssp TCCEEEEECSSSSSHHHHHHHHHHHHHHHHTCCCSEEEEETTHHH
T ss_pred CCCEEEEEcCCCCCccHHHHHHHHHHHHHcCCCCCCEEEEcCcHH
Confidence 4455555 8 3433333 34477777785 7888999864
No 264
>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*
Probab=39.35 E-value=18 Score=30.97 Aligned_cols=36 Identities=14% Similarity=0.090 Sum_probs=32.1
Q ss_pred CCCEEEEecchHHHHHHHHHhhcCCCeeEEEecCCC
Q 042003 160 NPPVLIFVQSKERAKELYGELAFDGIRAGVIHSDLS 195 (248)
Q Consensus 160 ~~~~liF~~~~~~~~~l~~~L~~~~~~v~~~~~~~~ 195 (248)
++++++||.+-..+...+..|+..|+.+..+.|++.
T Consensus 541 ~~~iv~~C~~g~rs~~a~~~l~~~G~~v~~l~GG~~ 576 (588)
T 3ics_A 541 DKDIYITCQLGMRGYVAARMLMEKGYKVKNVDGGFK 576 (588)
T ss_dssp SSCEEEECSSSHHHHHHHHHHHHTTCCEEEETTHHH
T ss_pred CCeEEEECCCCcHHHHHHHHHHHcCCcEEEEcchHH
Confidence 568999999999999999999999999888889864
No 265
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=39.21 E-value=8.6 Score=32.22 Aligned_cols=39 Identities=15% Similarity=0.109 Sum_probs=23.2
Q ss_pred CceeEEEEeccccccccCcccccchhHhhhCCCccceeEEEEeecC
Q 042003 60 SRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLP 105 (248)
Q Consensus 60 ~~~~~lIiDEah~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~ 105 (248)
..++++|+|||.++.+. .....-++++. ...|+| -||++
T Consensus 413 ~~~rlvvlDEA~kmD~~--~~~~~~~l~~~---lglQli--iatP~ 451 (483)
T 3euj_A 413 LPCRLLFLDQAARLDAM--SINTLFELCER---LDMQLL--IAAPE 451 (483)
T ss_dssp CCCCEEEESSGGGSCHH--HHHHHHHHHHH---TTCEEE--EEESS
T ss_pred CceeEEEEeccccCCHH--HHHHHHHHHHH---cCCEEE--EECcc
Confidence 58999999999654432 23333333333 467855 45544
No 266
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=39.13 E-value=16 Score=28.84 Aligned_cols=15 Identities=40% Similarity=0.406 Sum_probs=12.2
Q ss_pred eeEEEEecccccccc
Q 042003 62 VEYLVLDEADKLFEV 76 (248)
Q Consensus 62 ~~~lIiDEah~~~~~ 76 (248)
-.++++||+|.+...
T Consensus 131 ~~vlilDEi~~l~~~ 145 (387)
T 2v1u_A 131 IYIIVLDEIDFLPKR 145 (387)
T ss_dssp EEEEEEETTTHHHHS
T ss_pred eEEEEEccHhhhccc
Confidence 559999999998653
No 267
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=38.92 E-value=81 Score=20.69 Aligned_cols=78 Identities=10% Similarity=0.063 Sum_probs=46.8
Q ss_pred EEEEcCCchhHHHHHHHHHhccCCCCEEEEecchHHHHHHHHHhhcCCCeeEEEecCCCHHHHHHHHHHhhc--CCceEE
Q 042003 137 KLVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKERAKELYGELAFDGIRAGVIHSDLSQTQRENAVDDFRA--GKTWVL 214 (248)
Q Consensus 137 ~~~~~~~~~~~~~~l~~~~~~~~~~~~liF~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~r~~~~~~f~~--g~~~il 214 (248)
.++.+++.......+...+... + -.++.+.+..++. +.+....+.+.++.-.++...-.+.++.+++ ....|+
T Consensus 9 ~iLivdd~~~~~~~l~~~L~~~-g-~~v~~~~~~~~a~---~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii 83 (154)
T 2rjn_A 9 TVMLVDDEQPILNSLKRLIKRL-G-CNIITFTSPLDAL---EALKGTSVQLVISDMRMPEMGGEVFLEQVAKSYPDIERV 83 (154)
T ss_dssp EEEEECSCHHHHHHHHHHHHTT-T-CEEEEESCHHHHH---HHHTTSCCSEEEEESSCSSSCHHHHHHHHHHHCTTSEEE
T ss_pred eEEEEcCCHHHHHHHHHHHHHc-C-CeEEEeCCHHHHH---HHHhcCCCCEEEEecCCCCCCHHHHHHHHHHhCCCCcEE
Confidence 3555677777777888888764 3 3445666655444 3455556788888766665444445555443 345666
Q ss_pred EEecc
Q 042003 215 IATDV 219 (248)
Q Consensus 215 v~T~~ 219 (248)
+.|..
T Consensus 84 ~ls~~ 88 (154)
T 2rjn_A 84 VISGY 88 (154)
T ss_dssp EEECG
T ss_pred EEecC
Confidence 66654
No 268
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*
Probab=38.80 E-value=1.5e+02 Score=23.65 Aligned_cols=70 Identities=13% Similarity=0.039 Sum_probs=42.6
Q ss_pred HHHHHHHHHhccCCCCEEEEecc--hH---HHHHHHHHhhcCCCeeEEEecC---CCHHHHHHHHHHhhcCCceEEEEe
Q 042003 147 KLLALRQSFAESLNPPVLIFVQS--KE---RAKELYGELAFDGIRAGVIHSD---LSQTQRENAVDDFRAGKTWVLIAT 217 (248)
Q Consensus 147 ~~~~l~~~~~~~~~~~~liF~~~--~~---~~~~l~~~L~~~~~~v~~~~~~---~~~~~r~~~~~~f~~g~~~ilv~T 217 (248)
..+.+.++++.. +++++|.+.. .. ..+++.+.|++.++.+..+.+. -+.+.-.+..+.+++.+.+++|+-
T Consensus 28 ~~~~l~~~l~~~-g~~~liVtd~~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIav 105 (371)
T 1o2d_A 28 ILEKRGNIIDLL-GKRALVVTGKSSSKKNGSLDDLKKLLDETEISYEIFDEVEENPSFDNVMKAVERYRNDSFDFVVGL 105 (371)
T ss_dssp HHHHHGGGGGGT-CSEEEEEEESSGGGTSSHHHHHHHHHHHTTCEEEEEEEECSSCBHHHHHHHHHHHTTSCCSEEEEE
T ss_pred HHHHHHHHHHHc-CCEEEEEECchHHhhccHHHHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHHHhcCCCEEEEe
Confidence 344455555554 3677777654 22 3577777787777766665532 345556667777777777777654
No 269
>3lhi_A Putative 6-phosphogluconolactonase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.33A {Neisseria gonorrhoeae}
Probab=37.88 E-value=24 Score=26.19 Aligned_cols=28 Identities=25% Similarity=0.354 Sum_probs=24.0
Q ss_pred ChHHHHHHHhcCCcccCceeEEEEeccc
Q 042003 44 TPLRLRLAIRRKKIDLSRVEYLVLDEAD 71 (248)
Q Consensus 44 Tp~~l~~~~~~~~~~~~~~~~lIiDEah 71 (248)
||..+.+.+....++++++.++-+||--
T Consensus 45 tp~~~y~~L~~~~i~w~~v~~f~~DEr~ 72 (232)
T 3lhi_A 45 SPIAFFNALSQKDLDWKNVGITLADERI 72 (232)
T ss_dssp TTHHHHHHHHTSCCCGGGEEEEESEEES
T ss_pred CHHHHHHHHHhcCCCchheEEEEeeecc
Confidence 6778888888888999999999999943
No 270
>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2
Probab=37.85 E-value=21 Score=30.23 Aligned_cols=35 Identities=17% Similarity=0.116 Sum_probs=30.7
Q ss_pred CCCEEEEecchHHHHHHHHHhhcCCCeeEEEec-CC
Q 042003 160 NPPVLIFVQSKERAKELYGELAFDGIRAGVIHS-DL 194 (248)
Q Consensus 160 ~~~~liF~~~~~~~~~l~~~L~~~~~~v~~~~~-~~ 194 (248)
++++++||.+-..+...+..|+..|+.+..+.| |+
T Consensus 322 ~~~ivv~c~~g~rs~~aa~~L~~~G~~v~~l~G~G~ 357 (539)
T 1yt8_A 322 GARLVLVDDDGVRANMSASWLAQMGWQVAVLDGLSE 357 (539)
T ss_dssp TCEEEEECSSSSHHHHHHHHHHHTTCEEEEECSCCG
T ss_pred CCeEEEEeCCCCcHHHHHHHHHHcCCeEEEecCCCh
Confidence 578999999888888888899999999999999 76
No 271
>2ql9_A Caspase-7; cysteine protease, apoptosis, thiol protease, zymogen, hydro hydrolase inhibitor complex; HET: CIT; 2.14A {Homo sapiens} PDB: 2ql7_A* 2ql5_A* 2qlb_A* 2qlf_A 2qlj_A* 3edr_A 3ibc_A 3ibf_A 1i51_A
Probab=37.64 E-value=83 Score=22.15 Aligned_cols=40 Identities=15% Similarity=0.141 Sum_probs=31.5
Q ss_pred chHHHHHHHHHhhcCCCeeEEEecCCCHHHHHHHHHHhhcC
Q 042003 169 SKERAKELYGELAFDGIRAGVIHSDLSQTQRENAVDDFRAG 209 (248)
Q Consensus 169 ~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~r~~~~~~f~~g 209 (248)
+..+++.+.+.|+..|+.|.+ +..++.++-.+.++.|.+.
T Consensus 67 t~~D~~~L~~~F~~LgF~V~v-~~dlt~~em~~~l~~~s~~ 106 (173)
T 2ql9_A 67 TDKDAEALFKCFRSLGFDVIV-YNDCSCAKMQDLLKKASEE 106 (173)
T ss_dssp HHHHHHHHHHHHHHHTEEEEE-EESCCHHHHHHHHHHHHTS
T ss_pred cHHHHHHHHHHHHHCCCEEEE-EeCCCHHHHHHHHHHHHHh
Confidence 457789999999999999855 4567888888888888654
No 272
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=37.63 E-value=82 Score=20.34 Aligned_cols=79 Identities=14% Similarity=0.137 Sum_probs=51.0
Q ss_pred EEEEcCCchhHHHHHHHHHhccCCCCEEEEecchHHHHHHHHHhhcCCCeeEEEecCCCHHHHHHHHHHhhc----CCce
Q 042003 137 KLVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKERAKELYGELAFDGIRAGVIHSDLSQTQRENAVDDFRA----GKTW 212 (248)
Q Consensus 137 ~~~~~~~~~~~~~~l~~~~~~~~~~~~liF~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~r~~~~~~f~~----g~~~ 212 (248)
.++.++++......+...++.......+..+.+..++. +.+....+.+.++.-.++...-.+.++.+++ ....
T Consensus 7 ~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~---~~l~~~~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~p 83 (144)
T 3kht_A 7 RVLVVEDNPDDIALIRRVLDRKDIHCQLEFVDNGAKAL---YQVQQAKYDLIILDIGLPIANGFEVMSAVRKPGANQHTP 83 (144)
T ss_dssp EEEEECCCHHHHHHHHHHHHHTTCCEEEEEESSHHHHH---HHHTTCCCSEEEECTTCGGGCHHHHHHHHHSSSTTTTCC
T ss_pred EEEEEeCCHHHHHHHHHHHHhcCCCeeEEEECCHHHHH---HHhhcCCCCEEEEeCCCCCCCHHHHHHHHHhcccccCCC
Confidence 34556777777778888887763333355555555444 3455566788888877777666777777765 3456
Q ss_pred EEEEec
Q 042003 213 VLIATD 218 (248)
Q Consensus 213 ilv~T~ 218 (248)
|++.|.
T Consensus 84 ii~~s~ 89 (144)
T 3kht_A 84 IVILTD 89 (144)
T ss_dssp EEEEET
T ss_pred EEEEeC
Confidence 766664
No 273
>4gxt_A A conserved functionally unknown protein; structural genomics, PSI-biology; 1.82A {Anaerococcus prevotii}
Probab=37.63 E-value=1.6e+02 Score=23.67 Aligned_cols=100 Identities=18% Similarity=0.168 Sum_probs=60.8
Q ss_pred ccccchhHhhhCCCccceeEEEEeecCchHHHHHHHhc---C-CcEEEEEccccccccc-ceeEE---EEcCCchhHHHH
Q 042003 79 LLKHIDPVVKACSNPSIVRSLFSATLPDFVEELARSIM---H-DAVRVIVGRKNTASES-IKQKL---VFAGSEEGKLLA 150 (248)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~ 150 (248)
..+.+.++++.+......+.++||.....++.+...+. + .+..+..........+ +...+ ......+.|...
T Consensus 222 ~~p~~~eLi~~L~~~G~~v~IVSgg~~~~v~~ia~~lg~~y~ip~~~Vig~~l~~~~dG~~tg~~~~~~p~~~~~gK~~~ 301 (385)
T 4gxt_A 222 TLDEMVDLYRSLEENGIDCYIVSASFIDIVRAFATDTNNNYKMKEEKVLGLRLMKDDEGKILPKFDKDFPISIREGKVQT 301 (385)
T ss_dssp ECHHHHHHHHHHHHTTCEEEEEEEEEHHHHHHHHHCTTSSCCCCGGGEEEECEEECTTCCEEEEECTTSCCCSTHHHHHH
T ss_pred eCHHHHHHHHHHHHCCCeEEEEcCCcHHHHHHHHHHhCcccCCCcceEEEeEEEEecCCceeeeecCccceeCCCchHHH
Confidence 45666777777777889999999999887777777642 1 1111211111110011 11111 012345678888
Q ss_pred HHHHHhccC-CCCEEEEecchHHHHHHHH
Q 042003 151 LRQSFAESL-NPPVLIFVQSKERAKELYG 178 (248)
Q Consensus 151 l~~~~~~~~-~~~~liF~~~~~~~~~l~~ 178 (248)
+.+++.... ..+++.|-++..+...+..
T Consensus 302 i~~~~~~~~~~~~i~a~GDs~~D~~ML~~ 330 (385)
T 4gxt_A 302 INKLIKNDRNYGPIMVGGDSDGDFAMLKE 330 (385)
T ss_dssp HHHHTCCTTEECCSEEEECSGGGHHHHHH
T ss_pred HHHHHHhcCCCCcEEEEECCHhHHHHHhc
Confidence 888876543 3579999999999888754
No 274
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=37.42 E-value=80 Score=20.16 Aligned_cols=77 Identities=9% Similarity=0.023 Sum_probs=42.0
Q ss_pred eEEEEcCCchhHHHHHHHHHhccCCCCEEEEecchHHHHHHHHHhhcCCCeeEEEecCCCHHHHHHHHHHhhcCCceEEE
Q 042003 136 QKLVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKERAKELYGELAFDGIRAGVIHSDLSQTQRENAVDDFRAGKTWVLI 215 (248)
Q Consensus 136 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~liF~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~ilv 215 (248)
..++.++++......+...+... + -.+..+.+..++.. .+....+.+.+ .++++..+-.+.++.. .....|++
T Consensus 19 ~~ilivdd~~~~~~~l~~~L~~~-g-~~v~~~~~~~~al~---~l~~~~~dlvi-~~~~~g~~~~~~l~~~-~~~~~ii~ 91 (137)
T 2pln_A 19 MRVLLIEKNSVLGGEIEKGLNVK-G-FMADVTESLEDGEY---LMDIRNYDLVM-VSDKNALSFVSRIKEK-HSSIVVLV 91 (137)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHT-T-CEEEEESCHHHHHH---HHHHSCCSEEE-ECSTTHHHHHHHHHHH-STTSEEEE
T ss_pred CeEEEEeCCHHHHHHHHHHHHHc-C-cEEEEeCCHHHHHH---HHHcCCCCEEE-EcCccHHHHHHHHHhc-CCCccEEE
Confidence 34556777777777888888764 3 34456666555543 33444556655 4444443333333332 21566776
Q ss_pred Eecc
Q 042003 216 ATDV 219 (248)
Q Consensus 216 ~T~~ 219 (248)
.|..
T Consensus 92 ls~~ 95 (137)
T 2pln_A 92 SSDN 95 (137)
T ss_dssp EESS
T ss_pred EeCC
Confidence 6643
No 275
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=37.40 E-value=20 Score=28.30 Aligned_cols=17 Identities=24% Similarity=0.329 Sum_probs=13.5
Q ss_pred cCceeEEEEeccccccc
Q 042003 59 LSRVEYLVLDEADKLFE 75 (248)
Q Consensus 59 ~~~~~~lIiDEah~~~~ 75 (248)
.....++|+||+|.+..
T Consensus 117 ~~~~~vliiDe~~~l~~ 133 (373)
T 1jr3_A 117 RGRFKVYLIDEVHMLSR 133 (373)
T ss_dssp SSSSEEEEEECGGGSCH
T ss_pred cCCeEEEEEECcchhcH
Confidence 34567999999999754
No 276
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=37.27 E-value=85 Score=20.61 Aligned_cols=79 Identities=19% Similarity=0.188 Sum_probs=49.7
Q ss_pred eEEEEcCCchhHHHHHHHHHhccCCCCEEEEecchHHHHHHHHHhhcCCCeeEEEecCCCHHHHHHHHHHhhc--CCceE
Q 042003 136 QKLVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKERAKELYGELAFDGIRAGVIHSDLSQTQRENAVDDFRA--GKTWV 213 (248)
Q Consensus 136 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~liF~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~r~~~~~~f~~--g~~~i 213 (248)
..++.++++......+..++... +-.+..+.+..++.. .+....+.+.++.-.++...-.+.++.+++ ....|
T Consensus 15 ~~ILivdd~~~~~~~l~~~L~~~--g~~v~~~~~~~~a~~---~l~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~i 89 (153)
T 3hv2_A 15 PEILLVDSQEVILQRLQQLLSPL--PYTLHFARDATQALQ---LLASREVDLVISAAHLPQMDGPTLLARIHQQYPSTTR 89 (153)
T ss_dssp CEEEEECSCHHHHHHHHHHHTTS--SCEEEEESSHHHHHH---HHHHSCCSEEEEESCCSSSCHHHHHHHHHHHCTTSEE
T ss_pred ceEEEECCCHHHHHHHHHHhccc--CcEEEEECCHHHHHH---HHHcCCCCEEEEeCCCCcCcHHHHHHHHHhHCCCCeE
Confidence 34566777777788888888875 234556666555544 444556788888766665545555555543 34567
Q ss_pred EEEecc
Q 042003 214 LIATDV 219 (248)
Q Consensus 214 lv~T~~ 219 (248)
++.|..
T Consensus 90 i~~s~~ 95 (153)
T 3hv2_A 90 ILLTGD 95 (153)
T ss_dssp EEECCC
T ss_pred EEEECC
Confidence 776653
No 277
>1okg_A Possible 3-mercaptopyruvate sulfurtransferase; rhodanese, prolyl isomerase, catalytic triad, serine protease, leishmania pyruvate; HET: CSR; 2.10A {Leishmania major} SCOP: c.46.1.2 c.46.1.2 d.26.1.3
Probab=37.16 E-value=36 Score=27.31 Aligned_cols=36 Identities=25% Similarity=0.230 Sum_probs=27.7
Q ss_pred CCCEEEEe-cch-HHHHHHHHHhhcCCCeeEEEecCCC
Q 042003 160 NPPVLIFV-QSK-ERAKELYGELAFDGIRAGVIHSDLS 195 (248)
Q Consensus 160 ~~~~liF~-~~~-~~~~~l~~~L~~~~~~v~~~~~~~~ 195 (248)
+.+++||| .+- ..+.+++..|+..|+++..+.||+.
T Consensus 95 d~~VVvYc~~~G~rsa~ra~~~L~~~G~~V~~L~GG~~ 132 (373)
T 1okg_A 95 ELPVLCYDDECGAMGGCRLWWMLNSLGADAYVINGGFQ 132 (373)
T ss_dssp SSCEEEECSSTTTTTHHHHHHHHHHHTCCEEEETTTTH
T ss_pred CCeEEEEeCCCCchHHHHHHHHHHHcCCeEEEeCCCHH
Confidence 67899999 433 3334778888888889999999975
No 278
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=36.79 E-value=17 Score=27.89 Aligned_cols=13 Identities=38% Similarity=0.427 Sum_probs=11.1
Q ss_pred eeEEEEecccccc
Q 042003 62 VEYLVLDEADKLF 74 (248)
Q Consensus 62 ~~~lIiDEah~~~ 74 (248)
-+++++||+|.+.
T Consensus 131 ~~vl~iDEid~l~ 143 (309)
T 3syl_A 131 GGVLFIDEAYYLY 143 (309)
T ss_dssp TSEEEEETGGGSC
T ss_pred CCEEEEEChhhhc
Confidence 3599999999985
No 279
>3hzu_A Thiosulfate sulfurtransferase SSEA; niaid, ssgcid, infectious disease, transferase structural genomics; 2.10A {Mycobacterium tuberculosis} PDB: 3p3a_A
Probab=36.76 E-value=15 Score=28.80 Aligned_cols=36 Identities=11% Similarity=0.170 Sum_probs=30.7
Q ss_pred CCCEEEEecchHHHHHHHHHhhc-CCCe-eEEEecCCC
Q 042003 160 NPPVLIFVQSKERAKELYGELAF-DGIR-AGVIHSDLS 195 (248)
Q Consensus 160 ~~~~liF~~~~~~~~~l~~~L~~-~~~~-v~~~~~~~~ 195 (248)
++++++||.+-..+...+..|.+ .|+. +..+.|++.
T Consensus 259 ~~~ivvyC~sG~rs~~a~~~L~~~~G~~~v~~~~GG~~ 296 (318)
T 3hzu_A 259 DDQTVVYCRIGERSSHTWFVLTHLLGKADVRNYDGSWT 296 (318)
T ss_dssp TCCCEEECSSSHHHHHHHHHHHHTSCCSSCEECTTHHH
T ss_pred CCcEEEEcCChHHHHHHHHHHHHHcCCCCeeEeCCcHH
Confidence 57899999999999999999986 8884 899999843
No 280
>3ox4_A Alcohol dehydrogenase 2; iron, NAD, oxidoreductase; HET: NAD; 2.00A {Zymomonas mobilis} PDB: 3owo_A*
Probab=36.08 E-value=1.6e+02 Score=23.58 Aligned_cols=72 Identities=17% Similarity=0.140 Sum_probs=45.4
Q ss_pred hHHHHHHHHHhccCCCCEEEEecch-H---HHHHHHHHhhcCCCeeEEEec---CCCHHHHHHHHHHhhcCCceEEEEe
Q 042003 146 GKLLALRQSFAESLNPPVLIFVQSK-E---RAKELYGELAFDGIRAGVIHS---DLSQTQRENAVDDFRAGKTWVLIAT 217 (248)
Q Consensus 146 ~~~~~l~~~~~~~~~~~~liF~~~~-~---~~~~l~~~L~~~~~~v~~~~~---~~~~~~r~~~~~~f~~g~~~ilv~T 217 (248)
...+.+-++++....++++|.+... . ..+++.+.|++.++.+..+.+ .-+.+.-++..+.+++.+.+++|+-
T Consensus 17 g~~~~l~~~~~~~g~~~~liVtd~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIav 95 (383)
T 3ox4_A 17 GSLEKAIKDLNGSGFKNALIVSDAFMNKSGVVKQVADLLKAQGINSAVYDGVMPNPTVTAVLEGLKILKDNNSDFVISL 95 (383)
T ss_dssp THHHHHHHTTTTSCCCEEEEEEEHHHHHTTHHHHHHHHHHTTTCEEEEEEEECSSCBHHHHHHHHHHHHHHTCSEEEEE
T ss_pred CHHHHHHHHHHHcCCCEEEEEECCchhhCchHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHhcCcCEEEEe
Confidence 3455666666665446677766542 1 246677788888877766653 3345556666777777677777664
No 281
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=35.99 E-value=39 Score=28.23 Aligned_cols=66 Identities=15% Similarity=0.240 Sum_probs=39.3
Q ss_pred CCCEEEEecchHHHHHHHHHhhcCC----CeeEEEecCCCHHHHHHHHHHhhcCCceEEEEeccc------ccCCCCCCC
Q 042003 160 NPPVLIFVQSKERAKELYGELAFDG----IRAGVIHSDLSQTQRENAVDDFRAGKTWVLIATDVI------ARGMDFKGV 229 (248)
Q Consensus 160 ~~~~liF~~~~~~~~~l~~~L~~~~----~~v~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~------~~Gidip~~ 229 (248)
+.++++.++++.-+.++++.+++.. ..+....++..... .....+|+|+|.-. ...+++..+
T Consensus 189 ~~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~ 260 (508)
T 3fho_A 189 KPQAICLAPSRELARQIMDVVTEMGKYTEVKTAFGIKDSVPKG--------AKIDAQIVIGTPGTVMDLMKRRQLDARDI 260 (508)
T ss_dssp SCCEEEECSCHHHHHHHHHHHHHHSTTSSCCEEC------------------CCCCSEEEECHHHHHHHHHTTCSCCTTC
T ss_pred CceEEEEECcHHHHHHHHHHHHHhCCccCeeEEEEeCCccccc--------ccCCCCEEEECHHHHHHHHHcCCccccCC
Confidence 4589999999999999998887642 23333333221111 12356899999532 234567778
Q ss_pred cEEE
Q 042003 230 NCVI 233 (248)
Q Consensus 230 ~~Vi 233 (248)
++||
T Consensus 261 ~lII 264 (508)
T 3fho_A 261 KVFV 264 (508)
T ss_dssp CEEE
T ss_pred CEEE
Confidence 8776
No 282
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=35.93 E-value=24 Score=23.60 Aligned_cols=42 Identities=5% Similarity=-0.116 Sum_probs=23.5
Q ss_pred eeEEEEeccccccccCcccccchhHhhhCCCccceeEEEEeecC
Q 042003 62 VEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSATLP 105 (248)
Q Consensus 62 ~~~lIiDEah~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~ 105 (248)
-+.+++||+|.+.... ...+...+....+.+.++|+.|...+
T Consensus 76 ~~~l~lDei~~l~~~~--q~~Ll~~l~~~~~~~~~iI~~tn~~~ 117 (143)
T 3co5_A 76 GGVLYVGDIAQYSRNI--QTGITFIIGKAERCRVRVIASCSYAA 117 (143)
T ss_dssp TSEEEEEECTTCCHHH--HHHHHHHHHHHTTTTCEEEEEEEECT
T ss_pred CCeEEEeChHHCCHHH--HHHHHHHHHhCCCCCEEEEEecCCCH
Confidence 3689999999986532 22333333332234566666655443
No 283
>1t3k_A Arath CDC25, dual-specificity tyrosine phosphatase; cell cycle, phosphorylation, plant, hydrolase; NMR {Arabidopsis thaliana} SCOP: c.46.1.1
Probab=35.69 E-value=20 Score=24.49 Aligned_cols=37 Identities=14% Similarity=0.179 Sum_probs=23.9
Q ss_pred CCCEEEEec-chHHHHHHHHHh--------hcCCC-eeEEEecCCCH
Q 042003 160 NPPVLIFVQ-SKERAKELYGEL--------AFDGI-RAGVIHSDLSQ 196 (248)
Q Consensus 160 ~~~~liF~~-~~~~~~~l~~~L--------~~~~~-~v~~~~~~~~~ 196 (248)
++++++||. +-..+...+..| +..|+ ++..+.||+..
T Consensus 85 ~~~iVvyC~~~G~rs~~aa~~L~~~l~~~L~~~G~~~V~~L~GG~~~ 131 (152)
T 1t3k_A 85 KDTLVFHSALSQVRGPTCARRLVNYLDEKKEDTGIKNIMILERGFNG 131 (152)
T ss_dssp CCEEEESSSCCSSSHHHHHHHHHHHHHHSSSCCCSSEEEEESSTTHH
T ss_pred CCEEEEEcCCCCcchHHHHHHHHHHHHHHHHhcCCCcEEEEcCCHHH
Confidence 467888997 533333333333 45787 78999999753
No 284
>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}
Probab=35.40 E-value=1.1e+02 Score=22.86 Aligned_cols=59 Identities=17% Similarity=0.099 Sum_probs=40.1
Q ss_pred CCCEEEEecchHHHHHHHHHhhcCCCeeEEEecCCCHHH-HHHHHHHhh--cCCceEEEEec
Q 042003 160 NPPVLIFVQSKERAKELYGELAFDGIRAGVIHSDLSQTQ-RENAVDDFR--AGKTWVLIATD 218 (248)
Q Consensus 160 ~~~~liF~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~-r~~~~~~f~--~g~~~ilv~T~ 218 (248)
+-++++...+.+..++..+.+++.+.++..+..+.+.++ -++.++... -|++++||..-
T Consensus 33 Ga~Vvi~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iDiLVNNA 94 (255)
T 4g81_D 33 GARVILNDIRATLLAESVDTLTRKGYDAHGVAFDVTDELAIEAAFSKLDAEGIHVDILINNA 94 (255)
T ss_dssp TCEEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHHTTCCCCEEEECC
T ss_pred CCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHCCCCcEEEECC
Confidence 445666556667778888888888888888888876543 333344332 37889998764
No 285
>3sir_A Caspase; hydrolase; 2.68A {Drosophila melanogaster} PDB: 3sip_A
Probab=35.31 E-value=69 Score=24.18 Aligned_cols=37 Identities=11% Similarity=-0.023 Sum_probs=26.2
Q ss_pred HHHHHHHHHhhcCCCeeEEEecCCCHHHHHHHHHHhhc
Q 042003 171 ERAKELYGELAFDGIRAGVIHSDLSQTQRENAVDDFRA 208 (248)
Q Consensus 171 ~~~~~l~~~L~~~~~~v~~~~~~~~~~~r~~~~~~f~~ 208 (248)
.+++.+.+.|+..|+.|.. +..++.++-.+.++.|.+
T Consensus 44 ~D~~~L~~~f~~LGF~V~~-~~dlt~~em~~~l~~~~~ 80 (259)
T 3sir_A 44 VDCENLTRVLKQLDFEVTV-YKDCRYKDILRTIEYSAS 80 (259)
T ss_dssp CHHHHHHHHHHHTTCEEEE-EEECSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCCEEEE-EeCCCHHHHHHHHHHHHH
Confidence 5677888888888887654 445677777777777764
No 286
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A*
Probab=35.31 E-value=1.4e+02 Score=23.70 Aligned_cols=18 Identities=0% Similarity=-0.079 Sum_probs=8.5
Q ss_pred hHHHHHHHHHhhcCCCee
Q 042003 170 KERAKELYGELAFDGIRA 187 (248)
Q Consensus 170 ~~~~~~l~~~L~~~~~~v 187 (248)
.+.++++.+.+++.+..+
T Consensus 72 ~~~v~~~~~~~~~~~~d~ 89 (370)
T 1jq5_A 72 RNEVERIANIARKAEAAI 89 (370)
T ss_dssp HHHHHHHHHHHHHTTCSE
T ss_pred HHHHHHHHHHHHhcCCCE
Confidence 344455555555444433
No 287
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=35.22 E-value=88 Score=19.99 Aligned_cols=78 Identities=19% Similarity=0.236 Sum_probs=55.4
Q ss_pred EcCCchhHHHHHHHHHhccCCCCEEEEecc--hHHHHHHHHHhhcCCCeeEEEecCCCHHHHHHHHHHhhcCCceEEEEe
Q 042003 140 FAGSEEGKLLALRQSFAESLNPPVLIFVQS--KERAKELYGELAFDGIRAGVIHSDLSQTQRENAVDDFRAGKTWVLIAT 217 (248)
Q Consensus 140 ~~~~~~~~~~~l~~~~~~~~~~~~liF~~~--~~~~~~l~~~L~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T 217 (248)
.+.+.++....+.++++..+.-.+++.+.+ ++-....-+.-+..|..+.++...-....|++..+.|++...++--.+
T Consensus 57 tvedkedfrenireiwerypqldvvvivttddkewikdfieeakergvevfvvynnkdddrrkeaqqefrsdgvdvrtvs 136 (162)
T 2l82_A 57 TVEDKEDFRENIREIWERYPQLDVVVIVTTDDKEWIKDFIEEAKERGVEVFVVYNNKDDDRRKEAQQEFRSDGVDVRTVS 136 (162)
T ss_dssp ECCSHHHHHHHHHHHHHHCTTCCEEEEEECCCHHHHHHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHCCSSCEEEEES
T ss_pred eeccHHHHHHHHHHHHHhCCCCcEEEEEecCcHHHHHHHHHHHHhcCcEEEEEecCCCchhHHHHHHHhhhcCceeeecC
Confidence 456666777888889988865566666555 233333344445678999998888888899999999998877665433
No 288
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=35.11 E-value=31 Score=25.78 Aligned_cols=14 Identities=21% Similarity=0.335 Sum_probs=11.8
Q ss_pred eeEEEEeccccccc
Q 042003 62 VEYLVLDEADKLFE 75 (248)
Q Consensus 62 ~~~lIiDEah~~~~ 75 (248)
..++++||+|.+..
T Consensus 104 ~~vl~iDEid~l~~ 117 (268)
T 2r62_A 104 PSIIFIDEIDAIGK 117 (268)
T ss_dssp SCEEEESCGGGTTC
T ss_pred CeEEEEeChhhhcc
Confidence 47999999999864
No 289
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=34.99 E-value=13 Score=26.47 Aligned_cols=15 Identities=27% Similarity=0.335 Sum_probs=11.2
Q ss_pred CceeEEEEecccccc
Q 042003 60 SRVEYLVLDEADKLF 74 (248)
Q Consensus 60 ~~~~~lIiDEah~~~ 74 (248)
.+.+++|+||++...
T Consensus 114 ~~~~~lilDei~~~~ 128 (202)
T 2w58_A 114 KKVPVLMLDDLGAEA 128 (202)
T ss_dssp HHSSEEEEEEECCC-
T ss_pred cCCCEEEEcCCCCCc
Confidence 456799999997754
No 290
>3od5_A Caspase-6; caspase domain, apoptotic protease, hydrolase-hydrolase INHI complex; 1.60A {Homo sapiens} SCOP: c.17.1.0 PDB: 3k7e_A 3s70_A 3v6m_A 3v6l_A 3nr2_A 4fxo_A 2wdp_A 3nkf_A 3s8e_A 4ejf_A 3qnw_A* 3p4u_A* 3p45_B 3qnw_B* 3p4u_B*
Probab=34.84 E-value=86 Score=23.93 Aligned_cols=38 Identities=11% Similarity=0.091 Sum_probs=27.3
Q ss_pred hHHHHHHHHHhhcCCCeeEEEecCCCHHHHHHHHHHhhc
Q 042003 170 KERAKELYGELAFDGIRAGVIHSDLSQTQRENAVDDFRA 208 (248)
Q Consensus 170 ~~~~~~l~~~L~~~~~~v~~~~~~~~~~~r~~~~~~f~~ 208 (248)
..+++.+.+.|+..|+.|.. +..++.++-.+.++.|.+
T Consensus 45 ~~D~~~L~~~f~~LGF~V~~-~~dlt~~em~~~l~~~~~ 82 (278)
T 3od5_A 45 CADRDNLTRRFSDLGFEVKC-FNDLKAEELLLKIHEVST 82 (278)
T ss_dssp HHHHHHHHHHHHHTTCEEEE-EESCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCEEEE-ecCCCHHHHHHHHHHHHh
Confidence 36778888888888888754 456777777777777753
No 291
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=34.76 E-value=38 Score=26.51 Aligned_cols=39 Identities=15% Similarity=0.266 Sum_probs=22.6
Q ss_pred CceeEEEEeccccccccCcccccchhHhhhCCCccceeEEEE
Q 042003 60 SRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFS 101 (248)
Q Consensus 60 ~~~~~lIiDEah~~~~~~~~~~~~~~~~~~~~~~~~~~i~~S 101 (248)
...+++|+||+|.+... ....+...+.. .+....+++.+
T Consensus 109 ~~~~viiiDe~~~l~~~--~~~~L~~~le~-~~~~~~~il~~ 147 (340)
T 1sxj_C 109 KGFKLIILDEADAMTNA--AQNALRRVIER-YTKNTRFCVLA 147 (340)
T ss_dssp CSCEEEEETTGGGSCHH--HHHHHHHHHHH-TTTTEEEEEEE
T ss_pred CCceEEEEeCCCCCCHH--HHHHHHHHHhc-CCCCeEEEEEe
Confidence 45789999999998643 23334444444 33344444443
No 292
>1qle_D Cytochrome AA3, ccytochrome C oxidase; oxidoreductase/immune system, complex (oxidoreductase/antibody), electron transport; HET: HEA PC1; 3.0A {Paracoccus denitrificans} SCOP: f.23.8.1
Probab=34.69 E-value=17 Score=19.04 Aligned_cols=19 Identities=11% Similarity=0.300 Sum_probs=16.1
Q ss_pred EecCCCHHHHHHHHHHhhc
Q 042003 190 IHSDLSQTQRENAVDDFRA 208 (248)
Q Consensus 190 ~~~~~~~~~r~~~~~~f~~ 208 (248)
.||+|+..+.++..+.|-.
T Consensus 4 ~hG~MD~~~hE~Ty~gFi~ 22 (43)
T 1qle_D 4 KHGEMDIRHQQATFAGFIK 22 (43)
T ss_dssp CTTCSCCHHHHHHHHHHHH
T ss_pred CCCCCChHHHHHHHHHHHH
Confidence 4899999999999988853
No 293
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=34.45 E-value=91 Score=19.97 Aligned_cols=78 Identities=13% Similarity=0.003 Sum_probs=47.7
Q ss_pred EEEEcCCchhHHHHHHHHHhccCCCCEEEEecchHHHHHHHHHhhcCCCeeEEEecCCCHHHHHHHHHHhhc----CCce
Q 042003 137 KLVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKERAKELYGELAFDGIRAGVIHSDLSQTQRENAVDDFRA----GKTW 212 (248)
Q Consensus 137 ~~~~~~~~~~~~~~l~~~~~~~~~~~~liF~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~r~~~~~~f~~----g~~~ 212 (248)
.++.++++......+..+++.. + -.+..+.+..++- +.+....+.+.++.-.|+..+-.+.++.+++ ....
T Consensus 6 ~iLivdd~~~~~~~l~~~L~~~-g-~~v~~~~~~~~al---~~~~~~~~dlvl~D~~lp~~~g~~~~~~lr~~~~~~~~p 80 (136)
T 3t6k_A 6 TLLIVDDDDTVAEMLELVLRGA-G-YEVRRAASGEEAL---QQIYKNLPDALICDVLLPGIDGYTLCKRVRQHPLTKTLP 80 (136)
T ss_dssp EEEEECSCHHHHHHHHHHHHHT-T-CEEEEESSHHHHH---HHHHHSCCSEEEEESCCSSSCHHHHHHHHHHSGGGTTCC
T ss_pred EEEEEeCCHHHHHHHHHHHHHC-C-CEEEEeCCHHHHH---HHHHhCCCCEEEEeCCCCCCCHHHHHHHHHcCCCcCCcc
Confidence 3556677776777787877764 3 3445555555543 3445566788888777766555556665553 3456
Q ss_pred EEEEecc
Q 042003 213 VLIATDV 219 (248)
Q Consensus 213 ilv~T~~ 219 (248)
|++.|..
T Consensus 81 ii~~t~~ 87 (136)
T 3t6k_A 81 ILMLTAQ 87 (136)
T ss_dssp EEEEECT
T ss_pred EEEEecC
Confidence 7766653
No 294
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=34.33 E-value=84 Score=20.65 Aligned_cols=77 Identities=10% Similarity=0.023 Sum_probs=43.8
Q ss_pred EEEcCCchhHHHHHHHHHhccCCCCEEEEecchHHHHHHHHHhhcCCCeeEEEecCCCHHHHHHHHHHhhc--CCceEEE
Q 042003 138 LVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKERAKELYGELAFDGIRAGVIHSDLSQTQRENAVDDFRA--GKTWVLI 215 (248)
Q Consensus 138 ~~~~~~~~~~~~~l~~~~~~~~~~~~liF~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~r~~~~~~f~~--g~~~ilv 215 (248)
++.+++.......+...+... +- .+..+.+..++ .+.+....+.+.++.-.++...-.+.++.++. ....|++
T Consensus 6 ILivdd~~~~~~~l~~~L~~~-g~-~v~~~~~~~~a---~~~l~~~~~dliild~~l~~~~g~~~~~~l~~~~~~~pii~ 80 (155)
T 1qkk_A 6 VFLIDDDRDLRKAMQQTLELA-GF-TVSSFASATEA---LAGLSADFAGIVISDIRMPGMDGLALFRKILALDPDLPMIL 80 (155)
T ss_dssp EEEECSCHHHHHHHHHHHHHT-TC-EEEEESCHHHH---HHTCCTTCCSEEEEESCCSSSCHHHHHHHHHHHCTTSCEEE
T ss_pred EEEEeCCHHHHHHHHHHHHHc-Cc-EEEEECCHHHH---HHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEEE
Confidence 445666666677777777764 23 34455554443 34555566778888766654333444444432 3456666
Q ss_pred Eecc
Q 042003 216 ATDV 219 (248)
Q Consensus 216 ~T~~ 219 (248)
.|+.
T Consensus 81 ls~~ 84 (155)
T 1qkk_A 81 VTGH 84 (155)
T ss_dssp EECG
T ss_pred EECC
Confidence 6643
No 295
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=34.25 E-value=19 Score=28.40 Aligned_cols=15 Identities=33% Similarity=0.426 Sum_probs=12.2
Q ss_pred eeEEEEecccccccc
Q 042003 62 VEYLVLDEADKLFEV 76 (248)
Q Consensus 62 ~~~lIiDEah~~~~~ 76 (248)
-.++|+||+|.+...
T Consensus 129 ~~vlilDE~~~l~~~ 143 (386)
T 2qby_A 129 QVVIVLDEIDAFVKK 143 (386)
T ss_dssp CEEEEEETHHHHHHS
T ss_pred eEEEEEcChhhhhcc
Confidence 458999999998753
No 296
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=34.09 E-value=1.2e+02 Score=24.40 Aligned_cols=59 Identities=14% Similarity=-0.000 Sum_probs=39.4
Q ss_pred CCCEEEEecch-------HHHHHHHHHhhcCCCeeEEE---------ecCCCHHHH-HHHHHHhhcCCceEEEEecc
Q 042003 160 NPPVLIFVQSK-------ERAKELYGELAFDGIRAGVI---------HSDLSQTQR-ENAVDDFRAGKTWVLIATDV 219 (248)
Q Consensus 160 ~~~~liF~~~~-------~~~~~l~~~L~~~~~~v~~~---------~~~~~~~~r-~~~~~~f~~g~~~ilv~T~~ 219 (248)
+.++-|++++- ...+...+.|++.|+.+..- -++ ++++| ++..++|.+.+++.++|+--
T Consensus 43 GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag-td~~Ra~dL~~af~Dp~i~aI~~~rG 118 (371)
T 3tla_A 43 GDTIGFFSSSAPATVTAKNRFFRGVEFLQRKGFKLVSGKLTGKTDFYRSG-TIKERAQEFNELVYNPDITCIMSTIG 118 (371)
T ss_dssp TCEEEEECSSCCHHHHTHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSS-CHHHHHHHHHHHHTCTTEEEEEESCC
T ss_pred cCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCC-CHHHHHHHHHHHhhCCCCCEEEEccc
Confidence 44666777762 34556677888888877543 123 34455 56678889899999998753
No 297
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=33.89 E-value=17 Score=28.92 Aligned_cols=38 Identities=18% Similarity=0.203 Sum_probs=21.9
Q ss_pred EEEEeccccccccCccccc-chhHhhhCCCccceeEEEEeec
Q 042003 64 YLVLDEADKLFEVGNLLKH-IDPVVKACSNPSIVRSLFSATL 104 (248)
Q Consensus 64 ~lIiDEah~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~SAT~ 104 (248)
++++||+|.+.... .... +..+.... .+..+|+.|...
T Consensus 136 vlilDEi~~l~~~~-~~~~~l~~l~~~~--~~~~iI~~t~~~ 174 (384)
T 2qby_B 136 IIYLDEVDTLVKRR-GGDIVLYQLLRSD--ANISVIMISNDI 174 (384)
T ss_dssp EEEEETTHHHHHST-TSHHHHHHHHTSS--SCEEEEEECSST
T ss_pred EEEEECHHHhccCC-CCceeHHHHhcCC--cceEEEEEECCC
Confidence 99999999986532 2333 44444442 344555544443
No 298
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=33.83 E-value=20 Score=26.40 Aligned_cols=14 Identities=14% Similarity=0.306 Sum_probs=12.0
Q ss_pred ceeEEEEecccccc
Q 042003 61 RVEYLVLDEADKLF 74 (248)
Q Consensus 61 ~~~~lIiDEah~~~ 74 (248)
.+++|+|||++-+.
T Consensus 101 ~~dvViIDEaQF~~ 114 (214)
T 2j9r_A 101 EMDVIAIDEVQFFD 114 (214)
T ss_dssp SCCEEEECCGGGSC
T ss_pred CCCEEEEECcccCC
Confidence 58999999999854
No 299
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=33.57 E-value=16 Score=26.26 Aligned_cols=14 Identities=21% Similarity=0.273 Sum_probs=11.9
Q ss_pred ceeEEEEecccccc
Q 042003 61 RVEYLVLDEADKLF 74 (248)
Q Consensus 61 ~~~~lIiDEah~~~ 74 (248)
++++|++||++.+.
T Consensus 81 ~~dvViIDEaqfl~ 94 (191)
T 1xx6_A 81 DTEVIAIDEVQFFD 94 (191)
T ss_dssp TCSEEEECSGGGSC
T ss_pred cCCEEEEECCCCCC
Confidence 57899999999853
No 300
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=33.48 E-value=1.7e+02 Score=25.10 Aligned_cols=32 Identities=13% Similarity=0.092 Sum_probs=27.0
Q ss_pred CCCEEEEecchHHHHHHHHHhhcCCCeeEEEe
Q 042003 160 NPPVLIFVQSKERAKELYGELAFDGIRAGVIH 191 (248)
Q Consensus 160 ~~~~liF~~~~~~~~~l~~~L~~~~~~v~~~~ 191 (248)
.+.+.|.+.+...+..+.+.|.+.|+++....
T Consensus 347 ~~diaVL~r~~~~~~~l~~~l~~~~Ip~~~~~ 378 (647)
T 3lfu_A 347 LAECAILYRSNAQSRVLEEALLQASMPYRIYG 378 (647)
T ss_dssp GGGEEEEESSGGGHHHHHHHHHHTTCCEEESS
T ss_pred ccCEEEEEeCchhHHHHHHHHHHCCCCEEEeC
Confidence 45788889999999999999999998887643
No 301
>3nwp_A 6-phosphogluconolactonase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, hydrolase; HET: MSE P6G PG4; 1.40A {Shewanella baltica}
Probab=33.46 E-value=29 Score=25.81 Aligned_cols=28 Identities=39% Similarity=0.367 Sum_probs=23.8
Q ss_pred ChHHHHHHHhcCCcccCceeEEEEeccc
Q 042003 44 TPLRLRLAIRRKKIDLSRVEYLVLDEAD 71 (248)
Q Consensus 44 Tp~~l~~~~~~~~~~~~~~~~lIiDEah 71 (248)
||..+.+.+....++++++.++-+||=-
T Consensus 48 tp~~~y~~L~~~~idw~~v~~f~~DEr~ 75 (233)
T 3nwp_A 48 TPLKLFQLLSMKSIDWSDVYITLADERW 75 (233)
T ss_dssp TTHHHHHHHHHCCSCGGGEEEEESEEES
T ss_pred CHHHHHHHHHhcCCChhHeEEEeCeecc
Confidence 6778888887788899999999999943
No 302
>2wlr_A Putative thiosulfate sulfurtransferase YNJE; rhodanese domains; HET: EPE; 1.45A {Escherichia coli} PDB: 2wlx_A* 3ipo_A* 3ipp_A
Probab=32.93 E-value=23 Score=28.92 Aligned_cols=36 Identities=17% Similarity=0.103 Sum_probs=30.9
Q ss_pred CCCEEEEecchHHHHHHHHHhhcCCC-eeEEEecCCC
Q 042003 160 NPPVLIFVQSKERAKELYGELAFDGI-RAGVIHSDLS 195 (248)
Q Consensus 160 ~~~~liF~~~~~~~~~l~~~L~~~~~-~v~~~~~~~~ 195 (248)
.+++++||.+-..+...+..|+..|+ ++..+.|++.
T Consensus 358 ~~~ivvyC~sG~rs~~aa~~L~~~G~~~v~~~~GG~~ 394 (423)
T 2wlr_A 358 EQQVSFYCGTGWRASETFMYARAMGWKNVSVYDGGWY 394 (423)
T ss_dssp TSEEEEECSSSHHHHHHHHHHHHTTCSSEEEESSHHH
T ss_pred CCcEEEECCcHHHHHHHHHHHHHcCCCCcceeCccHH
Confidence 56899999998888888889999998 5889998843
No 303
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=32.82 E-value=26 Score=27.40 Aligned_cols=39 Identities=15% Similarity=0.181 Sum_probs=22.5
Q ss_pred CceeEEEEeccccccccCcccccchhHhhhCCCccceeEEEE
Q 042003 60 SRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFS 101 (248)
Q Consensus 60 ~~~~~lIiDEah~~~~~~~~~~~~~~~~~~~~~~~~~~i~~S 101 (248)
...+++++||+|.+.... ...+...+.. .+....+++++
T Consensus 132 ~~~~vliiDE~~~l~~~~--~~~Ll~~le~-~~~~~~~il~~ 170 (353)
T 1sxj_D 132 PPYKIIILDEADSMTADA--QSALRRTMET-YSGVTRFCLIC 170 (353)
T ss_dssp CSCEEEEETTGGGSCHHH--HHHHHHHHHH-TTTTEEEEEEE
T ss_pred CCceEEEEECCCccCHHH--HHHHHHHHHh-cCCCceEEEEe
Confidence 355799999999986532 3334444444 23344455544
No 304
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=32.80 E-value=1e+02 Score=20.09 Aligned_cols=83 Identities=10% Similarity=0.054 Sum_probs=50.1
Q ss_pred EEEEcCCchhHHHHHHHHHhccCCCCEEEEecchHHHHHHHHHh------hcCCCeeEEEecCCCHHHHHHHHHHhhc--
Q 042003 137 KLVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKERAKELYGEL------AFDGIRAGVIHSDLSQTQRENAVDDFRA-- 208 (248)
Q Consensus 137 ~~~~~~~~~~~~~~l~~~~~~~~~~~~liF~~~~~~~~~l~~~L------~~~~~~v~~~~~~~~~~~r~~~~~~f~~-- 208 (248)
.++.++++......+...+........+..+.+..++....+.. ....+.+.++.-.|+...-.+.++.+++
T Consensus 6 ~ILivddd~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~dliilD~~l~~~~g~~~~~~lr~~~ 85 (152)
T 3heb_A 6 TIVMIEDDLGHARLIEKNIRRAGVNNEIIAFTDGTSALNYLFGDDKSGRVSAGRAQLVLLDLNLPDMTGIDILKLVKENP 85 (152)
T ss_dssp EEEEECCCHHHHHHHHHHHHHTTCCCCEEEESSHHHHHHHHHCTTSSSGGGTTCBEEEEECSBCSSSBHHHHHHHHHHST
T ss_pred eEEEEeCCHHHHHHHHHHHHhCCCcceEEEeCCHHHHHHHHhccccccccccCCCCEEEEeCCCCCCcHHHHHHHHHhcc
Confidence 34556777777788888888764333455566655555443311 2445678888766666555666666654
Q ss_pred --CCceEEEEecc
Q 042003 209 --GKTWVLIATDV 219 (248)
Q Consensus 209 --g~~~ilv~T~~ 219 (248)
....|++.|..
T Consensus 86 ~~~~~pii~~t~~ 98 (152)
T 3heb_A 86 HTRRSPVVILTTT 98 (152)
T ss_dssp TTTTSCEEEEESC
T ss_pred cccCCCEEEEecC
Confidence 34556666653
No 305
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=32.16 E-value=38 Score=26.28 Aligned_cols=40 Identities=13% Similarity=0.106 Sum_probs=23.2
Q ss_pred cCCCcEEEeChHHHHHHHhcCC---------cccCceeEEEEecccccc
Q 042003 35 KFSCDILISTPLRLRLAIRRKK---------IDLSRVEYLVLDEADKLF 74 (248)
Q Consensus 35 ~~~~~i~v~Tp~~l~~~~~~~~---------~~~~~~~~lIiDEah~~~ 74 (248)
..+..+++.+...+...+.... -.+.+.+++|+||++...
T Consensus 179 ~~g~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~lLiiDdig~~~ 227 (308)
T 2qgz_A 179 KKGVSTTLLHFPSFAIDVKNAISNGSVKEEIDAVKNVPVLILDDIGAEQ 227 (308)
T ss_dssp HSCCCEEEEEHHHHHHHHHCCCC----CCTTHHHHTSSEEEEETCCC--
T ss_pred hcCCcEEEEEHHHHHHHHHHHhccchHHHHHHHhcCCCEEEEcCCCCCC
Confidence 4456777666555555444311 113467899999997543
No 306
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=32.15 E-value=94 Score=19.74 Aligned_cols=78 Identities=12% Similarity=0.181 Sum_probs=47.1
Q ss_pred EEEEcCCchhHHHHHHHHHhccCCCCEEEEecchHHHHHHHHHhhcCCCeeEEEecCCCHHHHHHHHHHhhcC--CceEE
Q 042003 137 KLVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKERAKELYGELAFDGIRAGVIHSDLSQTQRENAVDDFRAG--KTWVL 214 (248)
Q Consensus 137 ~~~~~~~~~~~~~~l~~~~~~~~~~~~liF~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~r~~~~~~f~~g--~~~il 214 (248)
.++.++++......+...+... +..+..+.+..++.. .++...+.+.++.-.++...-.+.++.+++. ...|+
T Consensus 9 ~ilivdd~~~~~~~l~~~L~~~--~~~v~~~~~~~~a~~---~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii 83 (137)
T 3hdg_A 9 KILIVEDDTDAREWLSTIISNH--FPEVWSAGDGEEGER---LFGLHAPDVIITDIRMPKLGGLEMLDRIKAGGAKPYVI 83 (137)
T ss_dssp CEEEECSCHHHHHHHHHHHHTT--CSCEEEESSHHHHHH---HHHHHCCSEEEECSSCSSSCHHHHHHHHHHTTCCCEEE
T ss_pred EEEEEeCCHHHHHHHHHHHHhc--CcEEEEECCHHHHHH---HHhccCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCcEE
Confidence 3455677777777788888773 334455555555443 3344467788887776655555566655542 45577
Q ss_pred EEecc
Q 042003 215 IATDV 219 (248)
Q Consensus 215 v~T~~ 219 (248)
+.|+.
T Consensus 84 ~~s~~ 88 (137)
T 3hdg_A 84 VISAF 88 (137)
T ss_dssp ECCCC
T ss_pred EEecC
Confidence 66653
No 307
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=32.02 E-value=93 Score=20.18 Aligned_cols=77 Identities=13% Similarity=0.241 Sum_probs=45.1
Q ss_pred EEEEcCCchhHHHHHHHHHhccCCCCEEEEecchHHHHHHHHHhhcCCCeeEEEecCCCHHHHHHHHHHhhc------CC
Q 042003 137 KLVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKERAKELYGELAFDGIRAGVIHSDLSQTQRENAVDDFRA------GK 210 (248)
Q Consensus 137 ~~~~~~~~~~~~~~l~~~~~~~~~~~~liF~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~r~~~~~~f~~------g~ 210 (248)
.++.++++......+..+++.. +.. ++.+.+.+++. +.+....+.+.++.-.|+..+-.+.++.+++ ..
T Consensus 16 ~iLivdd~~~~~~~l~~~L~~~-g~~-v~~~~~~~~al---~~~~~~~~dlvl~D~~mp~~~g~~~~~~lr~~~~~~~~~ 90 (143)
T 3m6m_D 16 RMLVADDHEANRMVLQRLLEKA-GHK-VLCVNGAEQVL---DAMAEEDYDAVIVDLHMPGMNGLDMLKQLRVMQASGMRY 90 (143)
T ss_dssp EEEEECSSHHHHHHHHHHHHC---CE-EEEESSHHHHH---HHHHHSCCSEEEEESCCSSSCHHHHHHHHHHHHHTTCCC
T ss_pred eEEEEeCCHHHHHHHHHHHHHc-CCe-EEEeCCHHHHH---HHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhchhccCCC
Confidence 3556777777777888888765 333 44455544443 3445567788888766665555555555541 23
Q ss_pred ceEEEEec
Q 042003 211 TWVLIATD 218 (248)
Q Consensus 211 ~~ilv~T~ 218 (248)
..+++.|.
T Consensus 91 ~pii~~s~ 98 (143)
T 3m6m_D 91 TPVVVLSA 98 (143)
T ss_dssp CCEEEEES
T ss_pred CeEEEEeC
Confidence 45666664
No 308
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=32.02 E-value=23 Score=27.52 Aligned_cols=13 Identities=31% Similarity=0.148 Sum_probs=11.1
Q ss_pred eEEEEeccccccc
Q 042003 63 EYLVLDEADKLFE 75 (248)
Q Consensus 63 ~~lIiDEah~~~~ 75 (248)
-++|+||+|.+..
T Consensus 130 ~vlvlDe~~~~~~ 142 (350)
T 2qen_A 130 FIVAFDEAQYLRF 142 (350)
T ss_dssp EEEEEETGGGGGG
T ss_pred EEEEEeCHHHHhc
Confidence 4899999999875
No 309
>1rhs_A Sulfur-substituted rhodanese; transferase, sulfurtransferase; 1.36A {Bos taurus} SCOP: c.46.1.2 c.46.1.2 PDB: 1boh_A 1boi_A 1orb_A 2ora_A 1dp2_A* 1rhd_A
Probab=32.01 E-value=34 Score=26.23 Aligned_cols=35 Identities=11% Similarity=0.213 Sum_probs=26.6
Q ss_pred CCCEEEEecc--hH-HHHHHHHHhhcCCC-eeEEEecCC
Q 042003 160 NPPVLIFVQS--KE-RAKELYGELAFDGI-RAGVIHSDL 194 (248)
Q Consensus 160 ~~~~liF~~~--~~-~~~~l~~~L~~~~~-~v~~~~~~~ 194 (248)
+.+++|||.+ -. .+.+++..|+..|+ ++..+.||+
T Consensus 92 ~~~vVvyc~~~~g~~~a~~a~~~L~~~G~~~V~~L~GG~ 130 (296)
T 1rhs_A 92 DTHVVVYDGDDLGSFYAPRVWWMFRVFGHRTVSVLNGGF 130 (296)
T ss_dssp TCEEEEECCCSSSCSSHHHHHHHHHHTTCCCEEEETTHH
T ss_pred CCeEEEEcCCCCCcchHHHHHHHHHHcCCCcEEEcCCCH
Confidence 5678899987 33 46778888888887 588888764
No 310
>1okg_A Possible 3-mercaptopyruvate sulfurtransferase; rhodanese, prolyl isomerase, catalytic triad, serine protease, leishmania pyruvate; HET: CSR; 2.10A {Leishmania major} SCOP: c.46.1.2 c.46.1.2 d.26.1.3
Probab=31.81 E-value=24 Score=28.31 Aligned_cols=37 Identities=11% Similarity=-0.052 Sum_probs=31.2
Q ss_pred CCCEEEEecchHHHHHHHHHhhcCCC-eeEEEecCCCH
Q 042003 160 NPPVLIFVQSKERAKELYGELAFDGI-RAGVIHSDLSQ 196 (248)
Q Consensus 160 ~~~~liF~~~~~~~~~l~~~L~~~~~-~v~~~~~~~~~ 196 (248)
++++++||.+-..+...+..|+..|+ ++..+.|++..
T Consensus 246 d~~ivvyC~sG~rs~~a~~~L~~~G~~~v~~~~GG~~~ 283 (373)
T 1okg_A 246 LSSFVFSCGSGVTACINIALVHHLGLGHPYLYCGSWSE 283 (373)
T ss_dssp CTTSEEECSSSSTHHHHHHHHHHTTSCCCEECSSHHHH
T ss_pred CCCEEEECCchHHHHHHHHHHHHcCCCCeeEeCChHHH
Confidence 57899999998888888889999998 48899998653
No 311
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=31.60 E-value=1.1e+02 Score=19.96 Aligned_cols=79 Identities=13% Similarity=0.129 Sum_probs=49.6
Q ss_pred EEEEcCCchhHHHHHHHHHhccCCCCEEEEecchHHHHHHHHHhhcCCCeeEEEecCCCHHHHHHHHHHhhc--CCceEE
Q 042003 137 KLVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKERAKELYGELAFDGIRAGVIHSDLSQTQRENAVDDFRA--GKTWVL 214 (248)
Q Consensus 137 ~~~~~~~~~~~~~~l~~~~~~~~~~~~liF~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~r~~~~~~f~~--g~~~il 214 (248)
.++.++++......+..++....+...+..+.+..++.. .+....+.+.++.-.++...-.+.++.+++ ....|+
T Consensus 22 ~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~---~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~ii 98 (150)
T 4e7p_A 22 KVLVAEDQSMLRDAMCQLLTLQPDVESVLQAKNGQEAIQ---LLEKESVDIAILDVEMPVKTGLEVLEWIRSEKLETKVV 98 (150)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHH---HHTTSCCSEEEECSSCSSSCHHHHHHHHHHTTCSCEEE
T ss_pred EEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHH---HhhccCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCeEE
Confidence 455667777777888888876533345556666555543 455666788888877766555556665554 245566
Q ss_pred EEec
Q 042003 215 IATD 218 (248)
Q Consensus 215 v~T~ 218 (248)
+.|+
T Consensus 99 ~ls~ 102 (150)
T 4e7p_A 99 VVTT 102 (150)
T ss_dssp EEES
T ss_pred EEeC
Confidence 6664
No 312
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=31.55 E-value=37 Score=26.68 Aligned_cols=13 Identities=31% Similarity=0.238 Sum_probs=11.1
Q ss_pred eEEEEeccccccc
Q 042003 63 EYLVLDEADKLFE 75 (248)
Q Consensus 63 ~~lIiDEah~~~~ 75 (248)
++++|||+|.+..
T Consensus 191 ~vl~IDEi~~l~~ 203 (368)
T 3uk6_A 191 GVLFIDEVHMLDI 203 (368)
T ss_dssp CEEEEESGGGSBH
T ss_pred ceEEEhhccccCh
Confidence 5999999999754
No 313
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=31.55 E-value=37 Score=26.32 Aligned_cols=27 Identities=33% Similarity=0.388 Sum_probs=16.5
Q ss_pred eeEEEEecccccccc--CcccccchhHhh
Q 042003 62 VEYLVLDEADKLFEV--GNLLKHIDPVVK 88 (248)
Q Consensus 62 ~~~lIiDEah~~~~~--~~~~~~~~~~~~ 88 (248)
--++|+||+|.+... ..+...+..+..
T Consensus 138 ~~vlvlDe~~~~~~~~~~~~~~~l~~~~~ 166 (357)
T 2fna_A 138 NVIIVLDEAQELVKLRGVNLLPALAYAYD 166 (357)
T ss_dssp CEEEEEETGGGGGGCTTCCCHHHHHHHHH
T ss_pred CeEEEEECHHHhhccCchhHHHHHHHHHH
Confidence 348999999998652 124444444444
No 314
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=31.47 E-value=11 Score=30.01 Aligned_cols=12 Identities=50% Similarity=0.653 Sum_probs=10.6
Q ss_pred eeEEEEeccccc
Q 042003 62 VEYLVLDEADKL 73 (248)
Q Consensus 62 ~~~lIiDEah~~ 73 (248)
..++++||+|.+
T Consensus 126 ~~vlilDE~~~l 137 (389)
T 1fnn_A 126 YMFLVLDDAFNL 137 (389)
T ss_dssp CEEEEEETGGGS
T ss_pred eEEEEEECcccc
Confidence 559999999998
No 315
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=31.45 E-value=92 Score=19.26 Aligned_cols=77 Identities=6% Similarity=-0.018 Sum_probs=43.3
Q ss_pred EEEcCCchhHHHHHHHHHhccCCCCEEEEecchHHHHHHHHHhhcCCCeeEEEecCCCHHHHHHHHHHhhc----CCceE
Q 042003 138 LVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKERAKELYGELAFDGIRAGVIHSDLSQTQRENAVDDFRA----GKTWV 213 (248)
Q Consensus 138 ~~~~~~~~~~~~~l~~~~~~~~~~~~liF~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~r~~~~~~f~~----g~~~i 213 (248)
++.++++......+...++.. +-. ++.+.+..++.. .++...+.+.++.-.|+...-.+..+.+++ ....+
T Consensus 4 ilivdd~~~~~~~l~~~L~~~-~~~-v~~~~~~~~a~~---~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~i 78 (124)
T 1mb3_A 4 VLIVEDNELNMKLFHDLLEAQ-GYE-TLQTREGLSALS---IARENKPDLILMDIQLPEISGLEVTKWLKEDDDLAHIPV 78 (124)
T ss_dssp EEEECSCHHHHHHHHHHHHHT-TCE-EEEESCHHHHHH---HHHHHCCSEEEEESBCSSSBHHHHHHHHHHSTTTTTSCE
T ss_pred EEEEcCCHHHHHHHHHHHHHc-CcE-EEEeCCHHHHHH---HHhcCCCCEEEEeCCCCCCCHHHHHHHHHcCccccCCcE
Confidence 445666666777777777764 333 444555444433 344445677777766655444455555553 34567
Q ss_pred EEEecc
Q 042003 214 LIATDV 219 (248)
Q Consensus 214 lv~T~~ 219 (248)
++.|..
T Consensus 79 i~~s~~ 84 (124)
T 1mb3_A 79 VAVTAF 84 (124)
T ss_dssp EEEC--
T ss_pred EEEECC
Confidence 766654
No 316
>2ct6_A SH3 domain-binding glutamic acid-rich-like protein 2; SH3BGRL2,FASH3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.07 E-value=1e+02 Score=19.46 Aligned_cols=46 Identities=17% Similarity=0.261 Sum_probs=32.1
Q ss_pred CCEEEEecc-------hHHHHHHHHHhhcCCCeeEEEecCCCHHHHHHHHHHh
Q 042003 161 PPVLIFVQS-------KERAKELYGELAFDGIRAGVIHSDLSQTQRENAVDDF 206 (248)
Q Consensus 161 ~~~liF~~~-------~~~~~~l~~~L~~~~~~v~~~~~~~~~~~r~~~~~~f 206 (248)
.+++||..+ ++.++++.+.|...++....+.=..+++.+++..+.+
T Consensus 8 m~V~vy~~~~C~~C~~~~~~~~ak~~L~~~gi~y~~vdI~~~~~~~~~l~~~~ 60 (111)
T 2ct6_A 8 MVIRVFIASSSGFVAIKKKQQDVVRFLEANKIEFEEVDITMSEEQRQWMYKNV 60 (111)
T ss_dssp CCEEEEECSSCSCHHHHHHHHHHHHHHHHTTCCEEEEETTTCHHHHHHHHHSC
T ss_pred cEEEEEEcCCCCCcccchhHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHh
Confidence 356777643 3344478888988888887777777777777776665
No 317
>3sr3_A Microcin immunity protein MCCF; csgid, structural genomics, MCCF protein, center for structu genomics of infectious diseases, immune system; 1.50A {Bacillus anthracis} PDB: 3gjz_A 3t5m_A* 3u1b_A* 3tyx_A*
Probab=30.93 E-value=1.2e+02 Score=23.97 Aligned_cols=58 Identities=17% Similarity=0.093 Sum_probs=38.7
Q ss_pred CCCEEEEecch-------HHHHHHHHHhhcCCCeeEEE------e---cCCCHHHH-HHHHHHhhcCCceEEEEec
Q 042003 160 NPPVLIFVQSK-------ERAKELYGELAFDGIRAGVI------H---SDLSQTQR-ENAVDDFRAGKTWVLIATD 218 (248)
Q Consensus 160 ~~~~liF~~~~-------~~~~~l~~~L~~~~~~v~~~------~---~~~~~~~r-~~~~~~f~~g~~~ilv~T~ 218 (248)
+.++-|++++- ...+...+.|++.|+.+..- + ++ ++++| ++..++|.+.+++.++|+-
T Consensus 13 GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag-~d~~Ra~dL~~a~~Dp~i~aI~~~r 87 (336)
T 3sr3_A 13 GDTIGIYSPSSPVTYTSPKRFERAKSYLLQKGFHILEGSLTGRYDYYRSG-SIQERAKELNALIRNPNVSCIMSTI 87 (336)
T ss_dssp TCEEEEECSSSCHHHHCHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSS-CHHHHHHHHHHHHHCTTEEEEEESC
T ss_pred CCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEEcccccccccccCC-CHHHHHHHHHHHhhCCCCCEEEEcc
Confidence 45566777663 34556667788888877543 1 23 34455 5667788999999999875
No 318
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=30.87 E-value=92 Score=19.72 Aligned_cols=76 Identities=16% Similarity=0.109 Sum_probs=43.0
Q ss_pred EEEcCCchhHHHHHHHHHhccCCCCEEEEecchHHHHHHHHHhhcCCCeeEEEecCCCHHHHHHHHHHhhc--CCceEEE
Q 042003 138 LVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKERAKELYGELAFDGIRAGVIHSDLSQTQRENAVDDFRA--GKTWVLI 215 (248)
Q Consensus 138 ~~~~~~~~~~~~~l~~~~~~~~~~~~liF~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~r~~~~~~f~~--g~~~ilv 215 (248)
++.++++......+...+... +- .+..+.+..++.. .+....+.+.++.-.++...-.+.++.+++ ....+++
T Consensus 6 ilivdd~~~~~~~l~~~L~~~-g~-~v~~~~~~~~a~~---~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~ 80 (136)
T 1mvo_A 6 ILVVDDEESIVTLLQYNLERS-GY-DVITASDGEEALK---KAETEKPDLIVLDVMLPKLDGIEVCKQLRQQKLMFPILM 80 (136)
T ss_dssp EEEECSCHHHHHHHHHHHHHT-TC-EEEEESSHHHHHH---HHHHHCCSEEEEESSCSSSCHHHHHHHHHHTTCCCCEEE
T ss_pred EEEEECCHHHHHHHHHHHHHC-Cc-EEEEecCHHHHHH---HHhhcCCCEEEEecCCCCCCHHHHHHHHHcCCCCCCEEE
Confidence 455666666667777777764 23 3455666555443 344445677777766654444445555543 2445666
Q ss_pred Eec
Q 042003 216 ATD 218 (248)
Q Consensus 216 ~T~ 218 (248)
.|.
T Consensus 81 ~s~ 83 (136)
T 1mvo_A 81 LTA 83 (136)
T ss_dssp EEC
T ss_pred EEC
Confidence 554
No 319
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=30.87 E-value=66 Score=19.98 Aligned_cols=66 Identities=15% Similarity=0.101 Sum_probs=37.6
Q ss_pred EEEEcCCchhHHHHHHHHHhccCCCCEEEEecchHHHHHHHHHhhcCCCeeEEEecCCC-HHHHHHHHHHhh
Q 042003 137 KLVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKERAKELYGELAFDGIRAGVIHSDLS-QTQRENAVDDFR 207 (248)
Q Consensus 137 ~~~~~~~~~~~~~~l~~~~~~~~~~~~liF~~~~~~~~~l~~~L~~~~~~v~~~~~~~~-~~~r~~~~~~f~ 207 (248)
.++.+++.......+...++.. +-. +..+.+..++... +....+.+.++.-.++ ...-.+.++.++
T Consensus 7 ~ilivdd~~~~~~~l~~~L~~~-g~~-v~~~~~~~~a~~~---~~~~~~dlvi~d~~~~~~~~g~~~~~~l~ 73 (127)
T 2gkg_A 7 KILIVESDTALSATLRSALEGR-GFT-VDETTDGKGSVEQ---IRRDRPDLVVLAVDLSAGQNGYLICGKLK 73 (127)
T ss_dssp EEEEECSCHHHHHHHHHHHHHH-TCE-EEEECCHHHHHHH---HHHHCCSEEEEESBCGGGCBHHHHHHHHH
T ss_pred eEEEEeCCHHHHHHHHHHHHhc-Cce-EEEecCHHHHHHH---HHhcCCCEEEEeCCCCCCCCHHHHHHHHh
Confidence 3455666666777777777764 333 4455665555443 3344567777776665 433444555544
No 320
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=30.71 E-value=61 Score=26.80 Aligned_cols=58 Identities=21% Similarity=0.199 Sum_probs=37.3
Q ss_pred HHHHHhccCCCCEEEEecchHHHHHHHHHhhcC--CCeeEEEecCCCHHHHHHHHHHhhcCCceEEEEec
Q 042003 151 LRQSFAESLNPPVLIFVQSKERAKELYGELAFD--GIRAGVIHSDLSQTQRENAVDDFRAGKTWVLIATD 218 (248)
Q Consensus 151 l~~~~~~~~~~~~liF~~~~~~~~~l~~~L~~~--~~~v~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~ 218 (248)
+..+......++++|.|++ ..+.++.+.+++. +.++..+||+... ...+..+|+|+|.
T Consensus 77 i~~~~~~~~~~~~LIv~P~-~l~~qw~~e~~~~~~~~~v~~~~g~~~~---------~~~~~~~ivi~t~ 136 (500)
T 1z63_A 77 FSDAKKENELTPSLVICPL-SVLKNWEEELSKFAPHLRFAVFHEDRSK---------IKLEDYDIILTTY 136 (500)
T ss_dssp HHHHHHTTCCSSEEEEECS-TTHHHHHHHHHHHCTTSCEEECSSSTTS---------CCGGGSSEEEEEH
T ss_pred HHHHHhcCCCCCEEEEccH-HHHHHHHHHHHHHCCCceEEEEecCchh---------ccccCCcEEEeeH
Confidence 3334444445799999995 5677777777664 4678888887532 1223456888874
No 321
>1tvm_A PTS system, galactitol-specific IIB component; phosphotransferase system (PTS), P-loop; NMR {Escherichia coli}
Probab=30.65 E-value=1.1e+02 Score=19.62 Aligned_cols=62 Identities=13% Similarity=0.170 Sum_probs=36.2
Q ss_pred CCEEEEecch-H----HHHHHHHHhhcCCCeeEEEecCCCHHHHHHHHHHhhcCCceEEEEecccccCC-CCCCC
Q 042003 161 PPVLIFVQSK-E----RAKELYGELAFDGIRAGVIHSDLSQTQRENAVDDFRAGKTWVLIATDVIARGM-DFKGV 229 (248)
Q Consensus 161 ~~~liF~~~~-~----~~~~l~~~L~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gi-dip~~ 229 (248)
.++++.|++- . -+.++.+.+.+.++.+.+-+.+...-.. . ....+++++|.-+.... ++|-+
T Consensus 22 kkIlvvC~sG~gTS~ll~~kl~~~~~~~gi~~~V~~~~~~~~~~-----~--~~~~DlIist~~l~~~~~~ipvi 89 (113)
T 1tvm_A 22 RKIIVACGGAVATSTMAAEEIKELCQSHNIPVELIQCRVNEIET-----Y--MDGVHLICTTARVDRSFGDIPLV 89 (113)
T ss_dssp EEEEEESCSCSSHHHHHHHHHHHHHHHTTCCEEEEEECTTTTTT-----S--TTSCSEEEESSCCCCCSTTCCEE
T ss_pred cEEEEECCCCHHHHHHHHHHHHHHHHHcCCeEEEEEecHHHHhh-----c--cCCCCEEEECCccccccCCCCEE
Confidence 3688888662 2 2456666666777765444444332211 1 13578999998776555 66643
No 322
>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2
Probab=30.57 E-value=25 Score=29.77 Aligned_cols=35 Identities=14% Similarity=0.219 Sum_probs=30.0
Q ss_pred CCCEEEEecchHHHHHHHHHhhcCCC-eeEEEecCC
Q 042003 160 NPPVLIFVQSKERAKELYGELAFDGI-RAGVIHSDL 194 (248)
Q Consensus 160 ~~~~liF~~~~~~~~~l~~~L~~~~~-~v~~~~~~~ 194 (248)
+.++++||.+-..+...+..|+..|+ ++..+.||+
T Consensus 63 ~~~iVvyc~~g~~s~~a~~~L~~~G~~~V~~L~GG~ 98 (539)
T 1yt8_A 63 DTPITVYDDGEGLAPVAAQRLHDLGYSDVALLDGGL 98 (539)
T ss_dssp TSCEEEECSSSSHHHHHHHHHHHTTCSSEEEETTHH
T ss_pred CCeEEEEECCCChHHHHHHHHHHcCCCceEEeCCCH
Confidence 67999999987788999999999998 588887764
No 323
>1f1j_A Caspase-7 protease; caspase-7, cysteine protease, hydrolase, apoptosis, hydrolas hydrolase inhibitor complex; 2.35A {Homo sapiens} SCOP: c.17.1.1 PDB: 1kmc_A 3r5k_A 1i4o_A 1gqf_A 3h1p_A 1shj_A* 1k86_A 1k88_A 1shl_A*
Probab=30.48 E-value=80 Score=24.54 Aligned_cols=40 Identities=15% Similarity=0.141 Sum_probs=30.5
Q ss_pred chHHHHHHHHHhhcCCCeeEEEecCCCHHHHHHHHHHhhcC
Q 042003 169 SKERAKELYGELAFDGIRAGVIHSDLSQTQRENAVDDFRAG 209 (248)
Q Consensus 169 ~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~r~~~~~~f~~g 209 (248)
+..+++.+.+.|+..|+.|.. +..++..+-.+.++.|.+.
T Consensus 92 ~~~Da~~L~~~f~~LGF~V~~-~~dlt~~em~~~l~~~~~~ 131 (305)
T 1f1j_A 92 TDKDAEALFKCFRSLGFDVIV-YNDCSCAKMQDLLKKASEE 131 (305)
T ss_dssp HHHHHHHHHHHHHHHTEEEEE-EESCCHHHHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHHHCCCEEEE-ecCcCHHHHHHHHHHHHHh
Confidence 447888999999999988754 5567777878888878643
No 324
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=30.41 E-value=37 Score=28.01 Aligned_cols=13 Identities=31% Similarity=0.212 Sum_probs=11.2
Q ss_pred eEEEEeccccccc
Q 042003 63 EYLVLDEADKLFE 75 (248)
Q Consensus 63 ~~lIiDEah~~~~ 75 (248)
+++++||+|.+..
T Consensus 297 ~VliIDEa~~l~~ 309 (456)
T 2c9o_A 297 GVLFVDEVHMLDI 309 (456)
T ss_dssp CEEEEESGGGCBH
T ss_pred eEEEEechhhcCH
Confidence 5999999999854
No 325
>4e5s_A MCCFLIKE protein (BA_5613); structural genomics, center for structural genomi infectious diseases, csgid, serine peptidase S66; 1.95A {Bacillus anthracis}
Probab=29.68 E-value=1.4e+02 Score=23.36 Aligned_cols=60 Identities=15% Similarity=0.108 Sum_probs=38.4
Q ss_pred CCCEEEEecc-------hHHHHHHHHHhhcCCCeeEEEe------cC--CCHHHH-HHHHHHhhcCCceEEEEecc
Q 042003 160 NPPVLIFVQS-------KERAKELYGELAFDGIRAGVIH------SD--LSQTQR-ENAVDDFRAGKTWVLIATDV 219 (248)
Q Consensus 160 ~~~~liF~~~-------~~~~~~l~~~L~~~~~~v~~~~------~~--~~~~~r-~~~~~~f~~g~~~ilv~T~~ 219 (248)
+.++-|++++ ....+...+.|++.|+.+..-. +. =++++| ++..++|.+.+++.++|+--
T Consensus 12 GD~I~ivaPS~~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~rG 87 (331)
T 4e5s_A 12 GDEIRVISPSCSLSIVSTENRRLAVKRLTELGFHVTFSTHAEEIDRFASSSISSRVQDLHEAFRDPNVKAILTTLG 87 (331)
T ss_dssp TCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESCC
T ss_pred cCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEccc
Confidence 4455566655 3455566778888888776431 11 134555 55667888899999988753
No 326
>3tp9_A Beta-lactamase and rhodanese domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.70A {Alicyclobacillus acidocaldarius subsp}
Probab=29.57 E-value=26 Score=29.07 Aligned_cols=36 Identities=11% Similarity=0.170 Sum_probs=31.1
Q ss_pred CCCEEEEecchHHHHHHHHHhhcCCC-eeEEEecCCC
Q 042003 160 NPPVLIFVQSKERAKELYGELAFDGI-RAGVIHSDLS 195 (248)
Q Consensus 160 ~~~~liF~~~~~~~~~l~~~L~~~~~-~v~~~~~~~~ 195 (248)
++++++||.+-..+...+..|+..|+ ++..+.|++.
T Consensus 427 ~~~vvv~C~~G~ra~~a~~~L~~~G~~~v~~~~Gg~~ 463 (474)
T 3tp9_A 427 DGSVCVYCRTGGRSAIAASLLRAHGVGDVRNMVGGYE 463 (474)
T ss_dssp SSCEEEECSSSHHHHHHHHHHHHHTCSSEEEETTHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCCCCEEEecChHH
Confidence 56899999999899999999999998 4889988754
No 327
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=29.53 E-value=71 Score=20.47 Aligned_cols=78 Identities=9% Similarity=0.094 Sum_probs=48.6
Q ss_pred EEEEcCCchhHHHHHHHHHhccCCCCEEEEecchHHHHHHHHHhhcCCCeeEEEecCCCH--HHHHHHHHHhhcC--Cce
Q 042003 137 KLVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKERAKELYGELAFDGIRAGVIHSDLSQ--TQRENAVDDFRAG--KTW 212 (248)
Q Consensus 137 ~~~~~~~~~~~~~~l~~~~~~~~~~~~liF~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~--~~r~~~~~~f~~g--~~~ 212 (248)
.++.++++......+..+++.. +- .++.+.+..+ ..+.++...+.+.++.-.++. ..-.+.++.+++. ...
T Consensus 8 ~ilivdd~~~~~~~l~~~L~~~-g~-~v~~~~~~~~---a~~~l~~~~~dlvi~D~~l~~~~~~g~~~~~~l~~~~~~~~ 82 (136)
T 3kto_A 8 IIYLVDHQKDARAALSKLLSPL-DV-TIQCFASAES---FMRQQISDDAIGMIIEAHLEDKKDSGIELLETLVKRGFHLP 82 (136)
T ss_dssp EEEEECSCHHHHHHHHHHHTTS-SS-EEEEESSHHH---HTTSCCCTTEEEEEEETTGGGBTTHHHHHHHHHHHTTCCCC
T ss_pred eEEEEcCCHHHHHHHHHHHHHC-Cc-EEEEeCCHHH---HHHHHhccCCCEEEEeCcCCCCCccHHHHHHHHHhCCCCCC
Confidence 3555677777777888888775 33 3444554443 334555666788888877777 6666676666643 456
Q ss_pred EEEEecc
Q 042003 213 VLIATDV 219 (248)
Q Consensus 213 ilv~T~~ 219 (248)
|++.|..
T Consensus 83 ii~~s~~ 89 (136)
T 3kto_A 83 TIVMASS 89 (136)
T ss_dssp EEEEESS
T ss_pred EEEEEcC
Confidence 6666653
No 328
>1b93_A Protein (methylglyoxal synthase); glycolytic bypass, lyase; 1.90A {Escherichia coli} SCOP: c.24.1.2 PDB: 1egh_A 1ik4_A* 1s8a_A 1s89_A
Probab=29.49 E-value=66 Score=22.15 Aligned_cols=47 Identities=15% Similarity=0.051 Sum_probs=31.9
Q ss_pred chHHHHHHHHHhhcCCCeeEEEecCCCHHHHHHHHHHhhcCCceEEEEecc
Q 042003 169 SKERAKELYGELAFDGIRAGVIHSDLSQTQRENAVDDFRAGKTWVLIATDV 219 (248)
Q Consensus 169 ~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~ 219 (248)
|..++..+.+. .|+.|..+... +..-+.++.+..++|+++.+|-|..
T Consensus 45 T~gTa~~L~e~---~Gl~v~~v~k~-~eGG~p~I~d~I~~geIdlVInt~~ 91 (152)
T 1b93_A 45 TGTTGNLISRA---TGMNVNAMLSG-PMGGDQQVGALISEGKIDVLIFFWD 91 (152)
T ss_dssp ETTHHHHHHHH---HCCCCEEECCG-GGTHHHHHHHHHHTTCCCEEEEECC
T ss_pred ccHHHHHHHHH---hCceeEEEEec-CCCCCchHHHHHHCCCccEEEEcCC
Confidence 44555554442 57777777543 1114678999999999999988865
No 329
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=29.31 E-value=41 Score=27.77 Aligned_cols=17 Identities=24% Similarity=0.370 Sum_probs=12.0
Q ss_pred CceeEEEEecccccccc
Q 042003 60 SRVEYLVLDEADKLFEV 76 (248)
Q Consensus 60 ~~~~~lIiDEah~~~~~ 76 (248)
.+-.++++||+|.+...
T Consensus 105 ~~~~iLfIDEI~~l~~~ 121 (447)
T 3pvs_A 105 GRRTILFVDEVHRFNKS 121 (447)
T ss_dssp TCCEEEEEETTTCC---
T ss_pred CCCcEEEEeChhhhCHH
Confidence 45679999999998653
No 330
>2z06_A Putative uncharacterized protein TTHA0625; metal binding protein, structural genomics, NPPSFA; 2.20A {Thermus thermophilus} SCOP: d.159.1.10 PDB: 2cv9_A
Probab=29.02 E-value=92 Score=23.46 Aligned_cols=53 Identities=11% Similarity=0.145 Sum_probs=36.4
Q ss_pred EecchHHHHHHHHHhhcCCCeeEEEecCCCHHHHHHHHHHhhcCCceEEEEecccc
Q 042003 166 FVQSKERAKELYGELAFDGIRAGVIHSDLSQTQRENAVDDFRAGKTWVLIATDVIA 221 (248)
Q Consensus 166 F~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~ 221 (248)
|.+-.+.++++.+.|+ -++-+...|.+.+.+ ++.+..+-.|+.+++|.|.+-.
T Consensus 121 ~~~pf~~~~~~v~~lk-~d~IIv~~H~g~tse--k~~la~~~dg~Vd~VvGgHTHv 173 (252)
T 2z06_A 121 LDDPFRALDRLLEEEK-ADYVLVEVHAEATSE--KMALAHYLDGRASAVLGTHTHV 173 (252)
T ss_dssp CCCHHHHHHHHHHHCC-CSEEEEEEECSCHHH--HHHHHHHHBTTBSEEEEESSCS
T ss_pred cCCHHHHHHHHHHHhC-CCEEEEEeCCCcHHH--HHHHHHhCCCCeEEEEcCCCCc
Confidence 3344556777777777 555677779887654 2345556789999999997643
No 331
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=28.73 E-value=18 Score=25.95 Aligned_cols=63 Identities=8% Similarity=0.078 Sum_probs=38.2
Q ss_pred CCCcEEEeChHHHHHHHhcC-----------------CcccCceeEEEEeccccccccCcccccchhHhhhCCCccceeE
Q 042003 36 FSCDILISTPLRLRLAIRRK-----------------KIDLSRVEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRS 98 (248)
Q Consensus 36 ~~~~i~v~Tp~~l~~~~~~~-----------------~~~~~~~~~lIiDEah~~~~~~~~~~~~~~~~~~~~~~~~~~i 98 (248)
.+.+|.+.+|..-....... ...|..=+++|||||-.+... .+..++......+.|+|
T Consensus 79 ~Gr~V~vLAp~~~s~~~l~~~~~l~~~t~t~~~ll~~~~~~tp~s~lIVD~AekLS~k-----E~~~Lld~A~~~naqvv 153 (189)
T 2l8b_A 79 QGREVQIIAADRRSQMNMKQDERLSGELITGRRQLLEGMAFTPGSTVIVDQGEKLSLK-----ETLTLLDGAARHNVQVL 153 (189)
T ss_dssp TTCCEEEECSTTHHHHHHSCTTTCSSCSSSTTTTTTTSCCCCCCCEEEEEESSSHHHH-----HHHHHHHHHHHTTCCEE
T ss_pred cCeEEEEEcCchHHHHHHHhhcCcCcceeehhhhhcCCCCCCCCCEEEEechhhcCHH-----HHHHHHHHHHhcCCEEE
Confidence 46788888885544333221 112455679999999998543 34444444344567777
Q ss_pred EEEee
Q 042003 99 LFSAT 103 (248)
Q Consensus 99 ~~SAT 103 (248)
++--+
T Consensus 154 ll~~~ 158 (189)
T 2l8b_A 154 ITDSG 158 (189)
T ss_dssp EEESS
T ss_pred EeCCc
Confidence 76655
No 332
>4as2_A Phosphorylcholine phosphatase; hydrolase, HAD superfamily, alkylammonium compounds; HET: BTB; 2.12A {Pseudomonas aeruginosa} PDB: 4as3_A*
Probab=28.58 E-value=54 Score=25.77 Aligned_cols=113 Identities=15% Similarity=0.095 Sum_probs=63.4
Q ss_pred ccccchhHhhhCCCccceeEEEEeecCchHHHHHHHh---cC-CcEEEEEccccc-------------------c--ccc
Q 042003 79 LLKHIDPVVKACSNPSIVRSLFSATLPDFVEELARSI---MH-DAVRVIVGRKNT-------------------A--SES 133 (248)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~---~~-~~~~~~~~~~~~-------------------~--~~~ 133 (248)
....+.+++..+.....+++++|||...-++.+.... ++ .+..+.-..... . ...
T Consensus 144 ~~~~~~~l~~~l~~~G~~v~ivSas~~~~v~~~a~~~~~~ygIp~e~ViG~~~~~~~~~~~~~~~~~~~~~dg~y~~~~~ 223 (327)
T 4as2_A 144 VFSGQRELYNKLMENGIEVYVISAAHEELVRMVAADPRYGYNAKPENVIGVTTLLKNRKTGELTTARKQIAEGKYDPKAN 223 (327)
T ss_dssp ECHHHHHHHHHHHHTTCEEEEEEEEEHHHHHHHHTCGGGSCCCCGGGEEEECEEEECTTTCCEECHHHHHHTTCCCGGGG
T ss_pred cCHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHhhcccccCCCHHHeEeeeeeeecccccccccccccccccccccccc
Confidence 4445666677666678899999999877666666542 22 222222111000 0 000
Q ss_pred --ceeE---EEEcCCchhHHHHHHHHHhccCCCCEEEEecc-hHHHHHHHHHhhcCCCeeEEEec
Q 042003 134 --IKQK---LVFAGSEEGKLLALRQSFAESLNPPVLIFVQS-KERAKELYGELAFDGIRAGVIHS 192 (248)
Q Consensus 134 --~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~liF~~~-~~~~~~l~~~L~~~~~~v~~~~~ 192 (248)
+... .......+.|...+...+... .+++++|-+| ..+...+.......+....+.|-
T Consensus 224 ~~~~~~~~~~~p~~~~~GK~~~I~~~i~~g-~~Pi~a~Gns~dgD~~ML~~~~~~~~~~L~in~~ 287 (327)
T 4as2_A 224 LDLEVTPYLWTPATWMAGKQAAILTYIDRW-KRPILVAGDTPDSDGYMLFNGTAENGVHLWVNRK 287 (327)
T ss_dssp TTCEEEEEECSSCSSTHHHHHHHHHHTCSS-CCCSEEEESCHHHHHHHHHHTSCTTCEEEEECCC
T ss_pred ccccccccccccccccCccHHHHHHHHhhC-CCCeEEecCCCCCCHHHHhccccCCCeEEEEecC
Confidence 0000 011233567888888888543 5799999999 57777775555555555444443
No 333
>1zl0_A Hypothetical protein PA5198; structural genomics, PSI, PROT structure initiative, midwest center for structural genomic unknown function; HET: TLA PEG; 1.10A {Pseudomonas aeruginosa} SCOP: c.8.10.1 c.23.16.7 PDB: 1zrs_A 2aum_A 2aun_A
Probab=28.25 E-value=1.5e+02 Score=23.11 Aligned_cols=58 Identities=12% Similarity=0.117 Sum_probs=37.7
Q ss_pred CCEEEEecc----hHHHHHHHHHhhcCCCeeEEE---------ecCCCHHHH-HHHHHHhhcCCceEEEEecc
Q 042003 161 PPVLIFVQS----KERAKELYGELAFDGIRAGVI---------HSDLSQTQR-ENAVDDFRAGKTWVLIATDV 219 (248)
Q Consensus 161 ~~~liF~~~----~~~~~~l~~~L~~~~~~v~~~---------~~~~~~~~r-~~~~~~f~~g~~~ilv~T~~ 219 (248)
.++-|++++ .+..+...+.|++.|+.+..- .++ ++++| ++..++|.+.+++.++|+--
T Consensus 18 d~I~ivaPSs~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag-td~~Ra~dL~~a~~Dp~i~aI~~~rG 89 (311)
T 1zl0_A 18 GRVALIAPASAIATDVLEATLRQLEVHGVDYHLGRHVEARYRYLAG-TVEQRLEDLHNAFDMPDITAVWCLRG 89 (311)
T ss_dssp SEEEEECCSBCCCHHHHHHHHHHHHHTTCCEEECTTTTCCBTTBSS-CHHHHHHHHHHHHHSTTEEEEEESCC
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEECccccccccccCC-CHHHHHHHHHHHHhCCCCCEEEEccC
Confidence 345566554 344566677788888777642 233 34444 56678889999999998854
No 334
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=28.13 E-value=1.4e+02 Score=20.22 Aligned_cols=15 Identities=13% Similarity=0.186 Sum_probs=5.8
Q ss_pred HHHHHHHHHhhcCCC
Q 042003 171 ERAKELYGELAFDGI 185 (248)
Q Consensus 171 ~~~~~l~~~L~~~~~ 185 (248)
.-|+.+++.|...+.
T Consensus 16 ~~A~~ia~~l~~~g~ 30 (161)
T 3hly_A 16 RLSQAIGRGLVKTGV 30 (161)
T ss_dssp HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCC
Confidence 333344444433333
No 335
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=28.05 E-value=97 Score=21.10 Aligned_cols=25 Identities=16% Similarity=0.250 Sum_probs=14.9
Q ss_pred cchHHHHHHHHHhhcCCCeeEEEec
Q 042003 168 QSKERAKELYGELAFDGIRAGVIHS 192 (248)
Q Consensus 168 ~~~~~~~~l~~~L~~~~~~v~~~~~ 192 (248)
+|.+-|+.+++.|.+.|..+..+.-
T Consensus 17 nT~~iA~~ia~~l~~~g~~v~~~~~ 41 (159)
T 3fni_A 17 YSDRLAQAIINGITKTGVGVDVVDL 41 (159)
T ss_dssp THHHHHHHHHHHHHHTTCEEEEEES
T ss_pred HHHHHHHHHHHHHHHCCCeEEEEEC
Confidence 4456666666666666666555543
No 336
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=28.00 E-value=34 Score=31.50 Aligned_cols=66 Identities=15% Similarity=0.156 Sum_probs=39.5
Q ss_pred HHHHHHhccCCCCEEEEecchHHHHHHHHHh-hcCCCeeEEEecCCCHHHHHHHHHHhhcCCceEEEEec
Q 042003 150 ALRQSFAESLNPPVLIFVQSKERAKELYGEL-AFDGIRAGVIHSDLSQTQRENAVDDFRAGKTWVLIATD 218 (248)
Q Consensus 150 ~l~~~~~~~~~~~~liF~~~~~~~~~l~~~L-~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~ 218 (248)
.+..++.....++++|.|++ .-+.+..+.+ +..+.++.++||+.....+...... -+..+|+|+|.
T Consensus 190 ~i~~l~~~g~~~rvLIVvP~-sLl~Qw~~E~~~~f~l~v~v~~~~~~~~~~~~~~~~--~~~~dIvI~T~ 256 (968)
T 3dmq_A 190 ILHQQLLSGAAERVLIIVPE-TLQHQWLVEMLRRFNLRFALFDDERYAEAQHDAYNP--FDTEQLVICSL 256 (968)
T ss_dssp HHHHHHHTSSCCCEEEECCT-TTHHHHHHHHHHHSCCCCEECCHHHHHHHHHTTCSS--STTCSEEEECH
T ss_pred HHHHHHHhCCCCeEEEEeCH-HHHHHHHHHHHHHhCCCEEEEccchhhhhhhhcccc--cccCCEEEEcH
Confidence 33344444445699999999 7777777666 5568888888875332211111111 12457888884
No 337
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=27.93 E-value=1.5e+02 Score=20.31 Aligned_cols=78 Identities=9% Similarity=0.041 Sum_probs=45.4
Q ss_pred EEEEcCCchhHHHHHHHHHhccCCCCEEEEecchHHHHHHHHHhhcCCCeeEEEecCCCHHHHHHHHHHhhc--CCceEE
Q 042003 137 KLVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKERAKELYGELAFDGIRAGVIHSDLSQTQRENAVDDFRA--GKTWVL 214 (248)
Q Consensus 137 ~~~~~~~~~~~~~~l~~~~~~~~~~~~liF~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~r~~~~~~f~~--g~~~il 214 (248)
.++.++++......+..+++.. +- .+..+.+..++- +.+....+.+.++.-.|+..+-.+.++.+++ ....|+
T Consensus 9 ~iLivdd~~~~~~~l~~~L~~~-g~-~v~~~~~~~~al---~~~~~~~~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ii 83 (184)
T 3rqi_A 9 NFLVIDDNEVFAGTLARGLERR-GY-AVRQAHNKDEAL---KLAGAEKFEFITVXLHLGNDSGLSLIAPLCDLQPDARIL 83 (184)
T ss_dssp EEEEECSCHHHHHHHHHHHHHT-TC-EEEEECSHHHHH---HHHTTSCCSEEEECSEETTEESHHHHHHHHHHCTTCEEE
T ss_pred eEEEEcCCHHHHHHHHHHHHHC-CC-EEEEeCCHHHHH---HHHhhCCCCEEEEeccCCCccHHHHHHHHHhcCCCCCEE
Confidence 4556777777777888888774 33 345555555443 3445556777777655554333444444432 345677
Q ss_pred EEecc
Q 042003 215 IATDV 219 (248)
Q Consensus 215 v~T~~ 219 (248)
+.|..
T Consensus 84 ~lt~~ 88 (184)
T 3rqi_A 84 VLTGY 88 (184)
T ss_dssp EEESS
T ss_pred EEeCC
Confidence 66653
No 338
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=27.87 E-value=1.1e+02 Score=18.68 Aligned_cols=77 Identities=9% Similarity=0.118 Sum_probs=43.8
Q ss_pred EEEcCCchhHHHHHHHHHhccCCCCEEEEecchHHHHHHHHHhhcCCCeeEEEecCCCHHHHHHHHHHhhc--CCceEEE
Q 042003 138 LVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKERAKELYGELAFDGIRAGVIHSDLSQTQRENAVDDFRA--GKTWVLI 215 (248)
Q Consensus 138 ~~~~~~~~~~~~~l~~~~~~~~~~~~liF~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~r~~~~~~f~~--g~~~ilv 215 (248)
++.++++......+...+... + -.+..+++..++.. .+....+.+.++.-.++...-.+..+.+++ ....+++
T Consensus 4 ilivdd~~~~~~~l~~~l~~~-~-~~v~~~~~~~~a~~---~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~ 78 (116)
T 3a10_A 4 ILVVDDEPNIRELLKEELQEE-G-YEIDTAENGEEALK---KFFSGNYDLVILDIEMPGISGLEVAGEIRKKKKDAKIIL 78 (116)
T ss_dssp EEEECSCHHHHHHHHHHHHHT-T-CEEEEESSHHHHHH---HHHHSCCSEEEECSCCSSSCHHHHHHHHHHHCTTCCEEE
T ss_pred EEEEeCCHHHHHHHHHHHHHC-C-CEEEEeCCHHHHHH---HHhcCCCCEEEEECCCCCCCHHHHHHHHHccCCCCeEEE
Confidence 445666666677777777764 2 34556666555443 444556777777766654444445555442 3456666
Q ss_pred Eecc
Q 042003 216 ATDV 219 (248)
Q Consensus 216 ~T~~ 219 (248)
.|..
T Consensus 79 ~s~~ 82 (116)
T 3a10_A 79 LTAY 82 (116)
T ss_dssp EESC
T ss_pred EECC
Confidence 6643
No 339
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=27.70 E-value=12 Score=32.50 Aligned_cols=38 Identities=18% Similarity=0.211 Sum_probs=21.4
Q ss_pred CCcEEEeChHHHHHHHhcCCcccCceeEEEEecccccc
Q 042003 37 SCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLF 74 (248)
Q Consensus 37 ~~~i~v~Tp~~l~~~~~~~~~~~~~~~~lIiDEah~~~ 74 (248)
.++++++|............+.-..++++|||||-...
T Consensus 342 ~~~vv~~t~~~a~~~~~~~~~~~~~Fd~vIIDEAsQ~~ 379 (646)
T 4b3f_X 342 SANVVLATNTGASADGPLKLLPESYFDVVVIDECAQAL 379 (646)
T ss_dssp HCSEEEEETTTTCSSSGGGGSCTTCCSEEEETTGGGSC
T ss_pred hcceeeeehhhhhhhhHHHhhhhccCCEEEEcCccccc
Confidence 36788877532211111112233568899999996654
No 340
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=27.66 E-value=1.2e+02 Score=19.04 Aligned_cols=77 Identities=17% Similarity=0.141 Sum_probs=42.7
Q ss_pred EEEcCCchhHHHHHHHHHhccCCCCEEEEecchHHHHHHHHHhhcC-CCeeEEEecCCCH-HHHHHHHHHhhc--CCceE
Q 042003 138 LVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKERAKELYGELAFD-GIRAGVIHSDLSQ-TQRENAVDDFRA--GKTWV 213 (248)
Q Consensus 138 ~~~~~~~~~~~~~l~~~~~~~~~~~~liF~~~~~~~~~l~~~L~~~-~~~v~~~~~~~~~-~~r~~~~~~f~~--g~~~i 213 (248)
++.++++......+...+... +- .++.+.+..++.. .+... .+.+.++.-.++. ..-.+.++.+++ ....+
T Consensus 8 ilivdd~~~~~~~l~~~L~~~-g~-~v~~~~~~~~a~~---~l~~~~~~dlvi~d~~l~~~~~g~~~~~~l~~~~~~~~i 82 (132)
T 2rdm_A 8 ILLADDEAILLLDFESTLTDA-GF-LVTAVSSGAKAIE---MLKSGAAIDGVVTDIRFCQPPDGWQVARVAREIDPNMPI 82 (132)
T ss_dssp EEEECSSHHHHHHHHHHHHHT-TC-EEEEESSHHHHHH---HHHTTCCCCEEEEESCCSSSSCHHHHHHHHHHHCTTCCE
T ss_pred EEEEcCcHHHHHHHHHHHHHc-CC-EEEEECCHHHHHH---HHHcCCCCCEEEEeeeCCCCCCHHHHHHHHHhcCCCCCE
Confidence 445666666777777777753 33 3444555554443 44444 5677777766653 333444444442 34566
Q ss_pred EEEecc
Q 042003 214 LIATDV 219 (248)
Q Consensus 214 lv~T~~ 219 (248)
++.|..
T Consensus 83 i~~s~~ 88 (132)
T 2rdm_A 83 VYISGH 88 (132)
T ss_dssp EEEESS
T ss_pred EEEeCC
Confidence 666543
No 341
>4h1h_A LMO1638 protein; MCCF-like, csgid, MCCF homolog, structural genomics, niaid, institute of allergy and infectious diseases; 2.46A {Listeria monocytogenes}
Probab=27.66 E-value=1.7e+02 Score=22.83 Aligned_cols=58 Identities=14% Similarity=0.162 Sum_probs=37.7
Q ss_pred CCCEEEEecch-------HHHHHHHHHhhcCCCeeEEEe---------cCCCHHHH-HHHHHHhhcCCceEEEEec
Q 042003 160 NPPVLIFVQSK-------ERAKELYGELAFDGIRAGVIH---------SDLSQTQR-ENAVDDFRAGKTWVLIATD 218 (248)
Q Consensus 160 ~~~~liF~~~~-------~~~~~l~~~L~~~~~~v~~~~---------~~~~~~~r-~~~~~~f~~g~~~ilv~T~ 218 (248)
+.++-|.+++. ...+...+.|++.|+.+..-- ++ ++++| ++..++|.+.+++.++|+-
T Consensus 12 GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag-td~~Ra~dL~~a~~Dp~i~aI~~~r 86 (327)
T 4h1h_A 12 GDEIRIIAPSRSIGIMADNQVEIAVNRLTDMGFKVTFGEHVAEMDCMMSS-SIRSRVADIHEAFNDSSVKAILTVI 86 (327)
T ss_dssp TCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSC-CHHHHHHHHHHHHHCTTEEEEEESC
T ss_pred CCEEEEEeCCCCcCccCHHHHHHHHHHHHhCCCEEEECcchhhccCcccC-CHHHHHHHHHHHhhCCCCCEEEEcC
Confidence 45666776652 345566677888787765431 22 34445 5667788899999998874
No 342
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=27.55 E-value=23 Score=23.71 Aligned_cols=13 Identities=31% Similarity=0.396 Sum_probs=11.0
Q ss_pred eEEEEeccccccc
Q 042003 63 EYLVLDEADKLFE 75 (248)
Q Consensus 63 ~~lIiDEah~~~~ 75 (248)
+.+++||+|.+..
T Consensus 78 g~l~ldei~~l~~ 90 (145)
T 3n70_A 78 GTLVLSHPEHLTR 90 (145)
T ss_dssp SCEEEECGGGSCH
T ss_pred cEEEEcChHHCCH
Confidence 5799999999864
No 343
>2xw6_A MGS, methylglyoxal synthase; lyase; 1.08A {Thermus SP} PDB: 2x8w_A 1wo8_A
Probab=27.50 E-value=57 Score=21.89 Aligned_cols=48 Identities=8% Similarity=0.091 Sum_probs=33.5
Q ss_pred cchHHHHHHHHHhhcCCCeeEEEecCCCHHHHHHHHHHhhcCCceEEEEecc
Q 042003 168 QSKERAKELYGELAFDGIRAGVIHSDLSQTQRENAVDDFRAGKTWVLIATDV 219 (248)
Q Consensus 168 ~~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~ 219 (248)
.|..++..+.+. .|+.+..+... +.+-+.++.+..++|+++.+|-|..
T Consensus 36 AT~gTa~~L~e~---~Gl~v~~v~k~-~~eG~p~I~d~I~~geIdlVInt~~ 83 (134)
T 2xw6_A 36 ATGTTGRRIEEA---TGLTVEKLLSG-PLGGDQQMGARVAEGRILAVIFFRD 83 (134)
T ss_dssp ECHHHHHHHHHH---HCCCCEECSCG-GGTHHHHHHHHHHTTCEEEEEEECC
T ss_pred EccHHHHHHHHh---hCceEEEEEec-CCCCcchHHHHHHCCCccEEEEccC
Confidence 455666655542 47777776543 2135678999999999999988875
No 344
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=27.41 E-value=1.1e+02 Score=18.74 Aligned_cols=75 Identities=9% Similarity=0.030 Sum_probs=41.6
Q ss_pred EEcCCchhHHHHHHHHHhccCCCCEEEEecchHHHHHHHHHhhcCCCeeEEEecCCCHHHHHHHHHHhhc--CCceEEEE
Q 042003 139 VFAGSEEGKLLALRQSFAESLNPPVLIFVQSKERAKELYGELAFDGIRAGVIHSDLSQTQRENAVDDFRA--GKTWVLIA 216 (248)
Q Consensus 139 ~~~~~~~~~~~~l~~~~~~~~~~~~liF~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~r~~~~~~f~~--g~~~ilv~ 216 (248)
+.++++......+...+... + -.+..+.+..++.. .+....+.+.++.-.|+...-.+.++.+++ ....+++.
T Consensus 4 livdd~~~~~~~l~~~l~~~-g-~~v~~~~~~~~a~~---~~~~~~~dlil~D~~l~~~~g~~~~~~l~~~~~~~~ii~~ 78 (121)
T 2pl1_A 4 LVVEDNALLRHHLKVQIQDA-G-HQVDDAEDAKEADY---YLNEHIPDIAIVDLGLPDEDGLSLIRRWRSNDVSLPILVL 78 (121)
T ss_dssp EEECSCHHHHHHHHHHHHHT-T-CEEEEESSHHHHHH---HHHHSCCSEEEECSCCSSSCHHHHHHHHHHTTCCSCEEEE
T ss_pred EEEeCcHHHHHHHHHHHhhc-C-CEEEEeCCHHHHHH---HHhccCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEE
Confidence 34555665666777777654 2 33555555555443 444556677777766654444445555543 24556665
Q ss_pred ec
Q 042003 217 TD 218 (248)
Q Consensus 217 T~ 218 (248)
|.
T Consensus 79 s~ 80 (121)
T 2pl1_A 79 TA 80 (121)
T ss_dssp ES
T ss_pred ec
Confidence 54
No 345
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=27.33 E-value=1.1e+02 Score=18.87 Aligned_cols=77 Identities=10% Similarity=0.142 Sum_probs=43.3
Q ss_pred EEEEcCCchhHHHHHHHHHhccCCCCEEEEecchHHHHHHHHHhhcCCCeeEEEecCCCHHHHHHHHHHhhc--CCceEE
Q 042003 137 KLVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKERAKELYGELAFDGIRAGVIHSDLSQTQRENAVDDFRA--GKTWVL 214 (248)
Q Consensus 137 ~~~~~~~~~~~~~~l~~~~~~~~~~~~liF~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~r~~~~~~f~~--g~~~il 214 (248)
.++.++++......+...+... +- .+..+.+..++.. .+....+.+.++.-.|+...-.+..+.+++ ....++
T Consensus 5 ~ilivdd~~~~~~~l~~~l~~~-~~-~v~~~~~~~~a~~---~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii 79 (124)
T 1srr_A 5 KILIVDDQSGIRILLNEVFNKE-GY-QTFQAANGLQALD---IVTKERPDLVLLDMKIPGMDGIEILKRMKVIDENIRVI 79 (124)
T ss_dssp EEEEECSCHHHHHHHHHHHHTT-TC-EEEEESSHHHHHH---HHHHHCCSEEEEESCCTTCCHHHHHHHHHHHCTTCEEE
T ss_pred eEEEEeCCHHHHHHHHHHHHHC-Cc-EEEEeCCHHHHHH---HHhccCCCEEEEecCCCCCCHHHHHHHHHHhCCCCCEE
Confidence 3455677776777787877764 23 3445555554443 333445677777766654333444444442 345666
Q ss_pred EEec
Q 042003 215 IATD 218 (248)
Q Consensus 215 v~T~ 218 (248)
+.|.
T Consensus 80 ~~s~ 83 (124)
T 1srr_A 80 IMTA 83 (124)
T ss_dssp EEES
T ss_pred EEEc
Confidence 6654
No 346
>1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI, protein structure initiative; HET: APR; 1.60A {Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A*
Probab=27.01 E-value=1.8e+02 Score=23.16 Aligned_cols=67 Identities=13% Similarity=0.125 Sum_probs=40.9
Q ss_pred HHHHHhccCCCCEEEEecch--H--HHHHHHHHhhcCCCeeEEEecC---CCHHHHHHHHHHhhcCCceEEEEe
Q 042003 151 LRQSFAESLNPPVLIFVQSK--E--RAKELYGELAFDGIRAGVIHSD---LSQTQRENAVDDFRAGKTWVLIAT 217 (248)
Q Consensus 151 l~~~~~~~~~~~~liF~~~~--~--~~~~l~~~L~~~~~~v~~~~~~---~~~~~r~~~~~~f~~g~~~ilv~T 217 (248)
+.+.++....++++|.+... + ..+++.+.|++.++.+..+.+. -+.+.-.+..+.+++...+++|+-
T Consensus 22 l~~~l~~~g~~~~livtd~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIav 95 (386)
T 1rrm_A 22 LTDEVKRRGYQKALIVTDKTLVQCGVVAKVTDKMDAAGLAWAIYDGVVPNPTITVVKEGLGVFQNSGADYLIAI 95 (386)
T ss_dssp HHHHHHHHTCCEEEEECBHHHHHTTHHHHHHHHHHHTTCEEEEECBCCSSCBHHHHHHHHHHHHHHTCSEEEEE
T ss_pred HHHHHHHcCCCEEEEEECcchhhchHHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHhcCcCEEEEe
Confidence 33444433336777777542 1 4567777887778777666543 244555666777777666777654
No 347
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=26.92 E-value=48 Score=25.69 Aligned_cols=14 Identities=21% Similarity=0.363 Sum_probs=11.8
Q ss_pred eeEEEEeccccccc
Q 042003 62 VEYLVLDEADKLFE 75 (248)
Q Consensus 62 ~~~lIiDEah~~~~ 75 (248)
-.++++||+|.+..
T Consensus 111 ~~vl~iDEid~l~~ 124 (322)
T 3eie_A 111 PSIIFIDQVDALTG 124 (322)
T ss_dssp SEEEEEECGGGGSC
T ss_pred CeEEEechhhhhhc
Confidence 46999999999864
No 348
>1ta9_A Glycerol dehydrogenase; oxidoredu; 1.90A {Schizosaccharomyces pombe}
Probab=26.82 E-value=2.2e+02 Score=23.47 Aligned_cols=42 Identities=19% Similarity=0.247 Sum_probs=18.6
Q ss_pred HHHHHHHhhcCCCee--EEEecCCCHHHHHHHHHHhhcCCceEEE
Q 042003 173 AKELYGELAFDGIRA--GVIHSDLSQTQRENAVDDFRAGKTWVLI 215 (248)
Q Consensus 173 ~~~l~~~L~~~~~~v--~~~~~~~~~~~r~~~~~~f~~g~~~ilv 215 (248)
.+++.+.|++.++.+ ..+.|.-+.+.-.+..+.+++ +.+++|
T Consensus 107 ~~~v~~~L~~~gi~~~~~~~~ge~~~~~v~~~~~~~~~-~~D~II 150 (450)
T 1ta9_A 107 ANKIVDSLSQNGMTVTKLVFGGEASLVELDKLRKQCPD-DTQVII 150 (450)
T ss_dssp HHHHHHHHHHTTCEEEEEEECSCCCHHHHHHHHTTSCT-TCCEEE
T ss_pred HHHHHHHHHHCCCeEEEEeeCCCCCHHHHHHHHHHHhh-CCCEEE
Confidence 344455555555443 333444344344444444444 444443
No 349
>3czc_A RMPB; alpha/beta sandwich, phosphotransferase system, transferase, transport; 2.02A {Streptococcus mutans}
Probab=26.79 E-value=1.1e+02 Score=19.33 Aligned_cols=58 Identities=10% Similarity=0.113 Sum_probs=33.2
Q ss_pred CCEEEEecch-HHHH----HHHHHhhcCCCe-eEEEecCCCHHHHHHHHHHhhcCCceEEEEecccccCCC
Q 042003 161 PPVLIFVQSK-ERAK----ELYGELAFDGIR-AGVIHSDLSQTQRENAVDDFRAGKTWVLIATDVIARGMD 225 (248)
Q Consensus 161 ~~~liF~~~~-~~~~----~l~~~L~~~~~~-v~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gid 225 (248)
.++++.|.+- .+.. ++.+.+.+.++. +.+-+.+...-. . .. ...+++++|.-+..-++
T Consensus 19 ~kIlvvC~sG~gTS~m~~~kl~~~~~~~gi~~~~i~~~~~~~~~--~---~~--~~~DlIi~t~~l~~~~~ 82 (110)
T 3czc_A 19 VKVLTACGNGMGSSMVIKMKVENALRQLGVSDIESASCSVGEAK--G---LA--SNYDIVVASNHLIHELD 82 (110)
T ss_dssp EEEEEECCCCHHHHHHHHHHHHHHHHHTTCCCEEEEEECHHHHH--H---HG--GGCSEEEEETTTGGGTT
T ss_pred cEEEEECCCcHHHHHHHHHHHHHHHHHcCCCeEEEEEeeHHHHh--h---cc--CCCcEEEECCchHHHhC
Confidence 4688888663 3333 444566667776 555555433221 1 11 24689988887765555
No 350
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=26.78 E-value=29 Score=27.72 Aligned_cols=14 Identities=21% Similarity=0.406 Sum_probs=11.6
Q ss_pred eeEEEEeccccccc
Q 042003 62 VEYLVLDEADKLFE 75 (248)
Q Consensus 62 ~~~lIiDEah~~~~ 75 (248)
--++|+||+|.+..
T Consensus 139 ~~llvlDe~~~l~~ 152 (412)
T 1w5s_A 139 YLLVILDEFQSMLS 152 (412)
T ss_dssp EEEEEEESTHHHHS
T ss_pred eEEEEEeCHHHHhh
Confidence 44899999999865
No 351
>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A
Probab=26.66 E-value=1.4e+02 Score=19.76 Aligned_cols=64 Identities=17% Similarity=0.116 Sum_probs=41.6
Q ss_pred HHHHHHHHhccCCCCEEEEec------chHHHHHHHHHhhcCCCeeEEEecCCCHHHHHHHHHHhhcCCceEE
Q 042003 148 LLALRQSFAESLNPPVLIFVQ------SKERAKELYGELAFDGIRAGVIHSDLSQTQRENAVDDFRAGKTWVL 214 (248)
Q Consensus 148 ~~~l~~~~~~~~~~~~liF~~------~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~il 214 (248)
...+.+.++. .+++||+. .=-.|.++.+.|.+.++....+.=...++.+.+..+.........+
T Consensus 25 ~~~v~~~i~~---~~Vvvy~ks~~~~~~Cp~C~~ak~~L~~~gv~y~~vdI~~d~~~~~~L~~~~G~~tvP~V 94 (135)
T 2wci_A 25 IEKIQRQIAE---NPILLYMKGSPKLPSCGFSAQAVQALAACGERFAYVDILQNPDIRAELPKYANWPTFPQL 94 (135)
T ss_dssp HHHHHHHHHH---CSEEEEESBCSSSBSSHHHHHHHHHHHTTCSCCEEEEGGGCHHHHHHHHHHHTCCSSCEE
T ss_pred HHHHHHHhcc---CCEEEEEEecCCCCCCccHHHHHHHHHHcCCceEEEECCCCHHHHHHHHHHHCCCCcCEE
Confidence 3444444443 58999977 3357889999999998887777766666666666555443344333
No 352
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=26.64 E-value=2.6e+02 Score=24.17 Aligned_cols=56 Identities=16% Similarity=0.207 Sum_probs=33.6
Q ss_pred CCEEEEecchHHHHHHHHHhhcC---CCeeEEEecCCCHHHHHHHHHHhhcC-----CceEEEEec
Q 042003 161 PPVLIFVQSKERAKELYGELAFD---GIRAGVIHSDLSQTQRENAVDDFRAG-----KTWVLIATD 218 (248)
Q Consensus 161 ~~~liF~~~~~~~~~l~~~L~~~---~~~v~~~~~~~~~~~r~~~~~~f~~g-----~~~ilv~T~ 218 (248)
+++||.|++ ..+.+..+.+.+. ...+..++++... ++...+..|..+ ..+|+|+|-
T Consensus 115 ~~~LiV~P~-sll~qW~~E~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~vvi~ty 178 (644)
T 1z3i_X 115 DKVIVVSPS-SLVRNWYNEVGKWLGGRVQPVAIDGGSKD-EIDSKLVNFISQQGMRIPTPILIISY 178 (644)
T ss_dssp SCEEEEECH-HHHHHHHHHHHHHHGGGCCEEEECSSCHH-HHHHHHHHHHCCCSSCCSCCEEEEEH
T ss_pred CcEEEEecH-HHHHHHHHHHHHHcCCCeeEEEEeCCCHH-HHHHHHHHHHHhcCCCCCCcEEEeeH
Confidence 468999997 5566666666543 3456667776443 333344444332 357888884
No 353
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=26.17 E-value=40 Score=26.71 Aligned_cols=15 Identities=20% Similarity=0.399 Sum_probs=12.3
Q ss_pred ceeEEEEeccccccc
Q 042003 61 RVEYLVLDEADKLFE 75 (248)
Q Consensus 61 ~~~~lIiDEah~~~~ 75 (248)
.-.+|+|||+|.+..
T Consensus 143 ~~~vl~iDEid~l~~ 157 (355)
T 2qp9_X 143 KPSIIFIDQVDALTG 157 (355)
T ss_dssp SSEEEEEECGGGGTC
T ss_pred CCeEEEEechHhhcc
Confidence 456999999999864
No 354
>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}
Probab=26.12 E-value=1.9e+02 Score=22.26 Aligned_cols=63 Identities=10% Similarity=0.064 Sum_probs=41.1
Q ss_pred CCEEEEecchHHHHHHHHHhhcCCCeeEEEecCCCHHHHHHHHHHhhcCCceEEEEecccccCCCC
Q 042003 161 PPVLIFVQSKERAKELYGELAFDGIRAGVIHSDLSQTQRENAVDDFRAGKTWVLIATDVIARGMDF 226 (248)
Q Consensus 161 ~~~liF~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gidi 226 (248)
.-++|-+.+.+.+........+.+.++..-..+++.++..++.+.-+ +..++++.+ ++.|+|+
T Consensus 89 aDVvIDFT~p~a~~~~~~~~l~~Gv~vViGTTG~~~e~~~~L~~aa~--~~~~~~a~N-~SiGv~l 151 (288)
T 3ijp_A 89 TEGILDFSQPQASVLYANYAAQKSLIHIIGTTGFSKTEEAQIADFAK--YTTIVKSGN-MSLGVNL 151 (288)
T ss_dssp CSEEEECSCHHHHHHHHHHHHHHTCEEEECCCCCCHHHHHHHHHHHT--TSEEEECSC-CCHHHHH
T ss_pred CCEEEEcCCHHHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHhC--cCCEEEECC-CcHHHHH
Confidence 45777666667666666677777888877777788777666555543 356766665 3455543
No 355
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=26.06 E-value=1.3e+02 Score=18.90 Aligned_cols=52 Identities=8% Similarity=-0.039 Sum_probs=35.4
Q ss_pred CCCEEEEecc------hHHHHHHHHHhhcCCCeeEEEecCCCHHHHHHHHHHhhcCCc
Q 042003 160 NPPVLIFVQS------KERAKELYGELAFDGIRAGVIHSDLSQTQRENAVDDFRAGKT 211 (248)
Q Consensus 160 ~~~~liF~~~------~~~~~~l~~~L~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~ 211 (248)
..+++||..+ =-.|.++.+.|.+.++....+.=...++.++...+.......
T Consensus 17 ~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~gi~~~~~dI~~~~~~~~~l~~~~g~~tv 74 (109)
T 3ipz_A 17 SEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILENEMLRQGLKEYSNWPTF 74 (109)
T ss_dssp SSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHHTCSSS
T ss_pred cCCEEEEEecCCCCCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHHCCCCC
Confidence 3589999874 568889999999988877666544455555555554433333
No 356
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=25.77 E-value=1.2e+02 Score=18.52 Aligned_cols=76 Identities=8% Similarity=0.084 Sum_probs=40.3
Q ss_pred EEEcCCchhHHHHHHHHHhccCCCCEEEEecchHHHHHHHHHhhcCCCeeEEEecCCCHHHHHHHHHHhhc-CCceEEEE
Q 042003 138 LVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKERAKELYGELAFDGIRAGVIHSDLSQTQRENAVDDFRA-GKTWVLIA 216 (248)
Q Consensus 138 ~~~~~~~~~~~~~l~~~~~~~~~~~~liF~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~r~~~~~~f~~-g~~~ilv~ 216 (248)
++.++++......+...+... +- .+..+.+..++.. .+....+.+.++.-.|+...-.+..+.+++ ....+++.
T Consensus 4 ilivdd~~~~~~~l~~~l~~~-~~-~v~~~~~~~~a~~---~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~ii~~ 78 (120)
T 2a9o_A 4 ILIVDDEKPISDIIKFNMTKE-GY-EVVTAFNGREALE---QFEAEQPDIIILDLMLPEIDGLEVAKTIRKTSSVPILML 78 (120)
T ss_dssp EEEECSCHHHHHHHHHHHHHT-TC-EEEEESSHHHHHH---HHHHHCCSEEEECSSCSSSCHHHHHHHHHHHCCCCEEEE
T ss_pred EEEEcCCHHHHHHHHHHHHhc-Cc-EEEEecCHHHHHH---HHHhCCCCEEEEeccCCCCCHHHHHHHHHhCCCCCEEEE
Confidence 344566666666777777664 33 3445555444433 334445677777766554333344444432 34556655
Q ss_pred ec
Q 042003 217 TD 218 (248)
Q Consensus 217 T~ 218 (248)
|.
T Consensus 79 s~ 80 (120)
T 2a9o_A 79 SA 80 (120)
T ss_dssp ES
T ss_pred ec
Confidence 54
No 357
>1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A*
Probab=25.68 E-value=1.9e+02 Score=21.70 Aligned_cols=30 Identities=17% Similarity=0.120 Sum_probs=12.7
Q ss_pred CEEEEecchHHHHHHHHHhhcCCCeeEEEe
Q 042003 162 PVLIFVQSKERAKELYGELAFDGIRAGVIH 191 (248)
Q Consensus 162 ~~liF~~~~~~~~~l~~~L~~~~~~v~~~~ 191 (248)
-++|+|.+..........+-+.|.++...+
T Consensus 62 D~VVe~A~~~av~e~~~~iL~aG~dvv~~S 91 (253)
T 1j5p_A 62 STVVECASPEAVKEYSLQILKNPVNYIIIS 91 (253)
T ss_dssp CEEEECSCHHHHHHHHHHHTTSSSEEEECC
T ss_pred CEEEECCCHHHHHHHHHHHHHCCCCEEEcC
Confidence 344555444444443333333344444433
No 358
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=25.54 E-value=36 Score=30.55 Aligned_cols=33 Identities=18% Similarity=0.369 Sum_probs=22.5
Q ss_pred CCcEEEeChHHHHHHHhcCCcccCceeEEEEecccccc
Q 042003 37 SCDILISTPLRLRLAIRRKKIDLSRVEYLVLDEADKLF 74 (248)
Q Consensus 37 ~~~i~v~Tp~~l~~~~~~~~~~~~~~~~lIiDEah~~~ 74 (248)
..+|+++|...+. ...+. ..++++|||||....
T Consensus 498 ~a~VI~~T~~~~~----~~~L~-~~fd~viIDEA~q~~ 530 (802)
T 2xzl_A 498 KADVVCCTCVGAG----DKRLD-TKFRTVLIDESTQAS 530 (802)
T ss_dssp TCSEEEEETTGGG----CTTCC-SCCSEEEETTGGGSC
T ss_pred cCCEEEechhhcC----hHHHh-ccCCEEEEECccccc
Confidence 5789998864332 22232 388999999997654
No 359
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=25.45 E-value=1e+02 Score=19.72 Aligned_cols=77 Identities=14% Similarity=0.138 Sum_probs=44.1
Q ss_pred EEEEcCCchhHHHHHHHHHhccCCCCEEEEecchHHHHHHHHHhhcCCCeeEEEecCCCHHHHHHHHHHhhc--CCceEE
Q 042003 137 KLVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKERAKELYGELAFDGIRAGVIHSDLSQTQRENAVDDFRA--GKTWVL 214 (248)
Q Consensus 137 ~~~~~~~~~~~~~~l~~~~~~~~~~~~liF~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~r~~~~~~f~~--g~~~il 214 (248)
.++.++++......+...+... +- .+..+.+..++.. .+....+.+.++.-.++...-.+.++.+++ ....++
T Consensus 6 ~ILivdd~~~~~~~l~~~L~~~-g~-~v~~~~~~~~a~~---~l~~~~~dlvllD~~l~~~~g~~l~~~l~~~~~~~~ii 80 (137)
T 3cfy_A 6 RVLLVEDSTSLAILYKQYVKDE-PY-DIFHVETGRDAIQ---FIERSKPQLIILDLKLPDMSGEDVLDWINQNDIPTSVI 80 (137)
T ss_dssp EEEEECSCTTHHHHHHHHTTTS-SS-EEEEESSHHHHHH---HHHHHCCSEEEECSBCSSSBHHHHHHHHHHTTCCCEEE
T ss_pred eEEEEeCCHHHHHHHHHHHHhc-Cc-eEEEeCCHHHHHH---HHHhcCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEE
Confidence 3556677777777788877754 33 3445555554443 334445677777766654444455555543 244566
Q ss_pred EEec
Q 042003 215 IATD 218 (248)
Q Consensus 215 v~T~ 218 (248)
+.|.
T Consensus 81 ~ls~ 84 (137)
T 3cfy_A 81 IATA 84 (137)
T ss_dssp EEES
T ss_pred EEEe
Confidence 6654
No 360
>3s5u_A Putative uncharacterized protein; crispr, crispr adaptation mechanism, NEW spacer aquisition, binding, DNA binding protein; 2.70A {Enterococcus faecalis}
Probab=25.29 E-value=2e+02 Score=21.05 Aligned_cols=48 Identities=10% Similarity=0.279 Sum_probs=37.0
Q ss_pred hHHHHHHHHHhccCCCCEEEEecc-----hHHHHHHHHHhhcCCCeeEEEecC
Q 042003 146 GKLLALRQSFAESLNPPVLIFVQS-----KERAKELYGELAFDGIRAGVIHSD 193 (248)
Q Consensus 146 ~~~~~l~~~~~~~~~~~~liF~~~-----~~~~~~l~~~L~~~~~~v~~~~~~ 193 (248)
+++.....+......+|++||+|- .++.+.+++.....+.++..+-.+
T Consensus 147 e~i~~~lki~~el~~kkllvfvNl~~YLt~eEl~~L~e~i~~~~i~vL~IE~~ 199 (220)
T 3s5u_A 147 EKVMEITQVHRYLSKKKLLIFINACTYLTEDEVQQVVEYISLNNVDVLFLEQR 199 (220)
T ss_dssp HHHHHHHHHHHHCTTCCEEEEESGGGGCCHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred HHHHHHHHHHHHhcCCCEEEEEChHHhCCHHHHHHHHHHHHHhCCeEEEEecc
Confidence 555566666667768999999985 578888888888888888777665
No 361
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=25.26 E-value=1.7e+02 Score=20.23 Aligned_cols=53 Identities=13% Similarity=0.025 Sum_probs=30.4
Q ss_pred HHHHHHHHhhcCCCeeEEEe--cCCCHHHHHH-HHHHhhcCCceEEEEecccccCCC
Q 042003 172 RAKELYGELAFDGIRAGVIH--SDLSQTQREN-AVDDFRAGKTWVLIATDVIARGMD 225 (248)
Q Consensus 172 ~~~~l~~~L~~~~~~v~~~~--~~~~~~~r~~-~~~~f~~g~~~ilv~T~~~~~Gid 225 (248)
....+++.|++.|+.+..+. ++ +.+...+ +.+....++.+++|+|--.+.|-|
T Consensus 41 ng~~L~~~L~~~G~~v~~~~iV~D-d~~~i~~al~~~~a~~~~DlVittGG~g~~~~ 96 (178)
T 3iwt_A 41 SGDIIKQLLIENGHKIIGYSLVPD-DKIKILKAFTDALSIDEVDVIISTGGTGYSPT 96 (178)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEECS-CHHHHHHHHHHHHTCTTCCEEEEESCCSSSTT
T ss_pred hHHHHHHHHHHCCCEEEEEEEeCC-CHHHHHHHHHHHHhcCCCCEEEecCCcccCCC
Confidence 34567888888887764332 22 1222233 333344567788888876665543
No 362
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=25.25 E-value=1.4e+02 Score=19.06 Aligned_cols=76 Identities=11% Similarity=0.028 Sum_probs=44.2
Q ss_pred EEEcCCchhHHHHHHHHHhccCCCCEEEEecchHHHHHHHHHhhcCCCeeEEEecCCCHHHHHHHHHHhhcC-CceEEEE
Q 042003 138 LVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKERAKELYGELAFDGIRAGVIHSDLSQTQRENAVDDFRAG-KTWVLIA 216 (248)
Q Consensus 138 ~~~~~~~~~~~~~l~~~~~~~~~~~~liF~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~r~~~~~~f~~g-~~~ilv~ 216 (248)
++.+++.......+...+... +- .+..+.+..++.. .+....+.+.++.-.|+...-.+.++.+++. ...+++.
T Consensus 7 Ilivdd~~~~~~~l~~~L~~~-g~-~v~~~~~~~~al~---~~~~~~~dlvllD~~l~~~~g~~l~~~l~~~~~~~ii~l 81 (136)
T 2qzj_A 7 ILIIDGDKDNCQKLKGFLEEK-GI-SIDLAYNCEEAIG---KIFSNKYDLIFLEIILSDGDGWTLCKKIRNVTTCPIVYM 81 (136)
T ss_dssp EEEECSCHHHHHHHHHHHHTT-TC-EEEEESSHHHHHH---HHHHCCCSEEEEESEETTEEHHHHHHHHHTTCCCCEEEE
T ss_pred EEEEcCCHHHHHHHHHHHHHC-CC-EEEEECCHHHHHH---HHHhcCCCEEEEeCCCCCCCHHHHHHHHccCCCCCEEEE
Confidence 455677776777788888764 33 3445555444443 4444556777777666554445555655542 4556665
Q ss_pred ec
Q 042003 217 TD 218 (248)
Q Consensus 217 T~ 218 (248)
|.
T Consensus 82 s~ 83 (136)
T 2qzj_A 82 TY 83 (136)
T ss_dssp ES
T ss_pred Ec
Confidence 54
No 363
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=25.12 E-value=1.3e+02 Score=18.91 Aligned_cols=77 Identities=5% Similarity=0.044 Sum_probs=44.1
Q ss_pred EEEcCCchhHHHHHHHHHhccCCCCEEEEecchHHHHHHHHHhhcCCCeeEEEecCCCHHHHHHHHHHhhc--CCceEEE
Q 042003 138 LVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKERAKELYGELAFDGIRAGVIHSDLSQTQRENAVDDFRA--GKTWVLI 215 (248)
Q Consensus 138 ~~~~~~~~~~~~~l~~~~~~~~~~~~liF~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~r~~~~~~f~~--g~~~ilv 215 (248)
++.++++......+...++.. +- .+..+.+..++.. .+....+.+.++.-.|+...-.+.++.+++ ....+++
T Consensus 6 Ilivdd~~~~~~~l~~~L~~~-g~-~v~~~~~~~~al~---~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~ 80 (132)
T 3crn_A 6 ILIVDDDTAILDSTKQILEFE-GY-EVEIAATAGEGLA---KIENEFFNLALFXIKLPDMEGTELLEKAHKLRPGMKKIM 80 (132)
T ss_dssp EEEECSCHHHHHHHHHHHHHT-TC-EEEEESSHHHHHH---HHHHSCCSEEEECSBCSSSBHHHHHHHHHHHCTTSEEEE
T ss_pred EEEEeCCHHHHHHHHHHHHHC-Cc-eEEEeCCHHHHHH---HHhcCCCCEEEEecCCCCCchHHHHHHHHhhCCCCcEEE
Confidence 455667766777777777754 33 3455666554443 444556778887766654333444444432 3456666
Q ss_pred Eecc
Q 042003 216 ATDV 219 (248)
Q Consensus 216 ~T~~ 219 (248)
.|..
T Consensus 81 ~s~~ 84 (132)
T 3crn_A 81 VTGY 84 (132)
T ss_dssp EESC
T ss_pred Eecc
Confidence 6543
No 364
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=25.08 E-value=1.3e+02 Score=18.56 Aligned_cols=76 Identities=11% Similarity=0.125 Sum_probs=43.9
Q ss_pred EEEcCCchhHHHHHHHHHhccCCCCEEEEecchHHHHHHHHHhhcCCCeeEEEecCCCHHHHHHHHHHhhc-CCceEEEE
Q 042003 138 LVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKERAKELYGELAFDGIRAGVIHSDLSQTQRENAVDDFRA-GKTWVLIA 216 (248)
Q Consensus 138 ~~~~~~~~~~~~~l~~~~~~~~~~~~liF~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~r~~~~~~f~~-g~~~ilv~ 216 (248)
++.++++......+...+... + -.+..+.+..++. +.+....+.+.++.-.|+...-.+..+.+++ ....+++.
T Consensus 5 ilivdd~~~~~~~l~~~L~~~-~-~~v~~~~~~~~~~---~~~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~ii~~ 79 (122)
T 1zgz_A 5 IVIVEDEPVTQARLQSYFTQE-G-YTVSVTASGAGLR---EIMQNQSVDLILLDINLPDENGLMLTRALRERSTVGIILV 79 (122)
T ss_dssp EEEECSSHHHHHHHHHHHHHT-T-CEEEEESSHHHHH---HHHHHSCCSEEEEESCCSSSCHHHHHHHHHTTCCCEEEEE
T ss_pred EEEEECCHHHHHHHHHHHHHC-C-CeEEEecCHHHHH---HHHhcCCCCEEEEeCCCCCCChHHHHHHHHhcCCCCEEEE
Confidence 455666666777777777654 2 3345555554443 3444556777777766654444455555554 34556665
Q ss_pred ec
Q 042003 217 TD 218 (248)
Q Consensus 217 T~ 218 (248)
|.
T Consensus 80 s~ 81 (122)
T 1zgz_A 80 TG 81 (122)
T ss_dssp ES
T ss_pred EC
Confidence 54
No 365
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=25.06 E-value=2.1e+02 Score=21.49 Aligned_cols=47 Identities=4% Similarity=-0.077 Sum_probs=24.9
Q ss_pred hHHHHHHHHHhccCC---CC-EEEEecchHHH---HHHHHHhhcCCCeeEEEec
Q 042003 146 GKLLALRQSFAESLN---PP-VLIFVQSKERA---KELYGELAFDGIRAGVIHS 192 (248)
Q Consensus 146 ~~~~~l~~~~~~~~~---~~-~liF~~~~~~~---~~l~~~L~~~~~~v~~~~~ 192 (248)
+-...+.+.++.... .+ .++++++.... ..+.+.|...+....++.+
T Consensus 24 ~~~~gi~~~l~~~Gy~~g~~v~l~~~~~~~~~~~~~~~~~~l~~~~vDgII~~~ 77 (302)
T 2qh8_A 24 ATRQGLLDGLKAKGYEEGKNLEFDYKTAQGNPAIAVQIARQFVGENPDVLVGIA 77 (302)
T ss_dssp HHHHHHHHHHHHTTCCBTTTEEEEEEECTTCHHHHHHHHHHHHHTCCSEEEEES
T ss_pred HHHHHHHHHHHHcCCCCCCceEEEEecCCCCHHHHHHHHHHHHhCCCCEEEECC
Confidence 344455555555422 24 45667665333 3445566666666666555
No 366
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=24.66 E-value=1.3e+02 Score=18.54 Aligned_cols=76 Identities=11% Similarity=0.079 Sum_probs=42.6
Q ss_pred EEEcCCchhHHHHHHHHHhccCCCCEEEEecchHHHHHHHHHhhcCCCeeEEEecCCCHHHHHHHHHHhhc-CCceEEEE
Q 042003 138 LVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKERAKELYGELAFDGIRAGVIHSDLSQTQRENAVDDFRA-GKTWVLIA 216 (248)
Q Consensus 138 ~~~~~~~~~~~~~l~~~~~~~~~~~~liF~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~r~~~~~~f~~-g~~~ilv~ 216 (248)
++.++++......+...++.. +- .+..+++..++.. .+....+.+.++.-.++..+-.+..+.+++ ....+++.
T Consensus 6 ilivdd~~~~~~~l~~~l~~~-~~-~v~~~~~~~~a~~---~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~ii~~ 80 (123)
T 1xhf_A 6 ILIVEDELVTRNTLKSIFEAE-GY-DVFEATDGAEMHQ---ILSEYDINLVIMDINLPGKNGLLLARELREQANVALMFL 80 (123)
T ss_dssp EEEECSCHHHHHHHHHHHHTT-TC-EEEEESSHHHHHH---HHHHSCCSEEEECSSCSSSCHHHHHHHHHHHCCCEEEEE
T ss_pred EEEEeCCHHHHHHHHHHHhhC-Cc-EEEEeCCHHHHHH---HHhcCCCCEEEEcCCCCCCCHHHHHHHHHhCCCCcEEEE
Confidence 445666666677777777754 22 3455565554443 344556777777766654333444444432 35566665
Q ss_pred ec
Q 042003 217 TD 218 (248)
Q Consensus 217 T~ 218 (248)
|.
T Consensus 81 s~ 82 (123)
T 1xhf_A 81 TG 82 (123)
T ss_dssp ES
T ss_pred EC
Confidence 54
No 367
>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0
Probab=24.37 E-value=2.1e+02 Score=21.03 Aligned_cols=67 Identities=21% Similarity=0.314 Sum_probs=43.1
Q ss_pred HHHHHhccCCCCEEEEecchHHHHHHHHHhhcCCCeeEEEecCCCHHHH-HHHHHHhh--cCCceEEEEec
Q 042003 151 LRQSFAESLNPPVLIFVQSKERAKELYGELAFDGIRAGVIHSDLSQTQR-ENAVDDFR--AGKTWVLIATD 218 (248)
Q Consensus 151 l~~~~~~~~~~~~liF~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~r-~~~~~~f~--~g~~~ilv~T~ 218 (248)
+...+.+. +-++++...+.+..+.+.+.+...+..+..+..+++..+. ++.++... -|.+++||..-
T Consensus 27 ia~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lv~nA 96 (264)
T 3ucx_A 27 LARRCAEQ-GADLVLAARTVERLEDVAKQVTDTGRRALSVGTDITDDAQVAHLVDETMKAYGRVDVVINNA 96 (264)
T ss_dssp HHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTSCCSEEEECC
T ss_pred HHHHHHHC-cCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCCcEEEECC
Confidence 33333333 4567777777788888888888777778888887765432 33333332 26788888754
No 368
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=24.29 E-value=53 Score=27.05 Aligned_cols=38 Identities=5% Similarity=-0.088 Sum_probs=25.1
Q ss_pred hhHHHHHHHHHhcc-CCC---CEEEEecchHHHHHHHHHhhc
Q 042003 145 EGKLLALRQSFAES-LNP---PVLIFVQSKERAKELYGELAF 182 (248)
Q Consensus 145 ~~~~~~l~~~~~~~-~~~---~~liF~~~~~~~~~l~~~L~~ 182 (248)
+.....+.+..... .+. .+.|.|.+-+++..+.+.|+.
T Consensus 233 ~~~~~~i~~~~~~~~~~~~~~~~aIL~rtN~~~~~~n~~lr~ 274 (459)
T 3upu_A 233 TALRDFMVNYFSIVKSLDDLFENRVMAFTNKSVDKLNSIIRK 274 (459)
T ss_dssp SSHHHHHHHHHHHTTTCSCCTTEEEEESSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcchhhceEEEEehHhHHHHHHHHHHH
Confidence 33455555555422 123 788999998999888888865
No 369
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=24.08 E-value=1.3e+02 Score=18.55 Aligned_cols=76 Identities=9% Similarity=-0.036 Sum_probs=43.3
Q ss_pred EEEcCCchhHHHHHHHHHhccCCCCEEEEecchHHHHHHHHHhhcCCCeeEEEecCCCHHHHHHHHHHhhc----CCceE
Q 042003 138 LVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKERAKELYGELAFDGIRAGVIHSDLSQTQRENAVDDFRA----GKTWV 213 (248)
Q Consensus 138 ~~~~~~~~~~~~~l~~~~~~~~~~~~liF~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~r~~~~~~f~~----g~~~i 213 (248)
++.++++......+...+... +- .+..+++..++ .+.+....+.+.++.-.++...-.+.++.+++ ....+
T Consensus 5 ilivdd~~~~~~~l~~~l~~~-g~-~v~~~~~~~~a---~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~i 79 (127)
T 2jba_A 5 ILVVEDEAPIREMVCFVLEQN-GF-QPVEAEDYDSA---VNQLNEPWPDLILLAWMLPGGSGIQFIKHLRRESMTRDIPV 79 (127)
T ss_dssp EEEECSCHHHHHHHHHHHHHT-TC-EEEEECSHHHH---HTTCSSSCCSEEEEESEETTEEHHHHHHHHHTSTTTTTSCE
T ss_pred EEEEcCCHHHHHHHHHHHHHC-Cc-eEEEeCCHHHH---HHHHhccCCCEEEEecCCCCCCHHHHHHHHHhCcccCCCCE
Confidence 445666666667777777664 22 34455554433 34555556677777665554444555666554 34566
Q ss_pred EEEec
Q 042003 214 LIATD 218 (248)
Q Consensus 214 lv~T~ 218 (248)
++.|.
T Consensus 80 i~~s~ 84 (127)
T 2jba_A 80 VMLTA 84 (127)
T ss_dssp EEEEE
T ss_pred EEEeC
Confidence 65554
No 370
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=23.85 E-value=58 Score=26.78 Aligned_cols=55 Identities=18% Similarity=0.291 Sum_probs=35.5
Q ss_pred CceeEEEEecccccc--ccCcccccchhHhhhCCCccceeEEEEeecCchHHHHHHHh
Q 042003 60 SRVEYLVLDEADKLF--EVGNLLKHIDPVVKACSNPSIVRSLFSATLPDFVEELARSI 115 (248)
Q Consensus 60 ~~~~~lIiDEah~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~ 115 (248)
.+++++|+|++-+.. ....+...+..+.+.. .+...++.++|+...........+
T Consensus 178 ~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~-~pd~vlLVlDa~~gq~a~~~a~~f 234 (433)
T 3kl4_A 178 NKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVL-KPDDVILVIDASIGQKAYDLASRF 234 (433)
T ss_dssp TTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHH-CCSEEEEEEEGGGGGGGHHHHHHH
T ss_pred cCCCEEEEECCCCccccCCHHHHHHHHHHHHhh-CCcceEEEEeCccchHHHHHHHHH
Confidence 478999999998765 3333555666665553 345556778888766555555444
No 371
>3qhq_A CSN2, SAG0897 family crispr-associated protein; helicase, transferase; 2.00A {Streptococcus agalactiae} PDB: 3toc_A 3v7f_A
Probab=23.78 E-value=1.9e+02 Score=21.34 Aligned_cols=48 Identities=17% Similarity=0.193 Sum_probs=36.8
Q ss_pred hHHHHHHHHHhccCCCCEEEEecc-----hHHHHHHHHHhhcCCCeeEEEecC
Q 042003 146 GKLLALRQSFAESLNPPVLIFVQS-----KERAKELYGELAFDGIRAGVIHSD 193 (248)
Q Consensus 146 ~~~~~l~~~~~~~~~~~~liF~~~-----~~~~~~l~~~L~~~~~~v~~~~~~ 193 (248)
+++.....+......+|++||+|- .++.+.+++.....+.++..+-.+
T Consensus 147 eki~~~lki~~el~~kkllvfvNl~~YLt~eEl~~L~e~i~~~~i~vLlIE~~ 199 (229)
T 3qhq_A 147 EKCFEIIQVYHYLTKKNLLVFVNSGAYLTKDEVIKLCEYINLMQKSVLFLEPR 199 (229)
T ss_dssp HHHHHHHHHHHHCTTCCEEEEESCGGGCCHHHHHHHHHHHHHHCSCEEEEESS
T ss_pred HHHHHHHHHHHHhcCCCEEEEEChHHhCCHHHHHHHHHHHHHhCCeEEEEecc
Confidence 566666666667778999999985 578888888888877777777655
No 372
>2kpo_A Rossmann 2X2 fold protein; de novo designed, rossmann fold, NESG, GFT structural G PSI-2, protein structure initiative; NMR {Artificial gene}
Probab=23.68 E-value=1.2e+02 Score=18.01 Aligned_cols=67 Identities=19% Similarity=0.104 Sum_probs=45.5
Q ss_pred cCCchhHHHHHHHHHhccCCCCEEEEecchHHHHHHHHHhhcCCCeeEEEecCCCHHHHHHHHHHhhc
Q 042003 141 AGSEEGKLLALRQSFAESLNPPVLIFVQSKERAKELYGELAFDGIRAGVIHSDLSQTQRENAVDDFRA 208 (248)
Q Consensus 141 ~~~~~~~~~~l~~~~~~~~~~~~liF~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~r~~~~~~f~~ 208 (248)
+...++....+.++-+.+.+-+++|.+++.++.....+.-.+..+.+..-. -.++.+-...+..|.+
T Consensus 32 vktedelkkyleefrkesqnikvlilvsndeeldkakelaqkmeidvrtrk-vtspdeakrwikefse 98 (110)
T 2kpo_A 32 VKTEDELKKYLEEFRKESQNIKVLILVSNDEELDKAKELAQKMEIDVRTRK-VTSPDEAKRWIKEFSE 98 (110)
T ss_dssp CCSHHHHHHHHHHHTSSTTSEEEEEEESSHHHHHHHHHHHHHTTCCEEEEE-CSSHHHHHHHHHHHHH
T ss_pred eccHHHHHHHHHHHHhhccCeEEEEEEcChHHHHHHHHHHHhhceeeeeee-cCChHHHHHHHHHHhh
Confidence 344444555566666666567999999998888877666666666665433 3456777888888864
No 373
>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}
Probab=23.64 E-value=2.3e+02 Score=21.13 Aligned_cols=68 Identities=18% Similarity=0.232 Sum_probs=42.3
Q ss_pred HHHHHHhccCCCCEEEEecchHHHHHHHHHhhcCCCeeEEEecCCCHHH-HHHHHHHhh--cCCceEEEEec
Q 042003 150 ALRQSFAESLNPPVLIFVQSKERAKELYGELAFDGIRAGVIHSDLSQTQ-RENAVDDFR--AGKTWVLIATD 218 (248)
Q Consensus 150 ~l~~~~~~~~~~~~liF~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~-r~~~~~~f~--~g~~~ilv~T~ 218 (248)
.+...+.+. +-++++...+.+..+.+.+.+...+..+..+..+++..+ -++.++... -|.+++||..-
T Consensus 47 aia~~la~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~g~iD~lvnnA 117 (276)
T 3r1i_A 47 KVALAYAEA-GAQVAVAARHSDALQVVADEIAGVGGKALPIRCDVTQPDQVRGMLDQMTGELGGIDIAVCNA 117 (276)
T ss_dssp HHHHHHHHT-TCEEEEEESSGGGGHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHHSCCSEEEECC
T ss_pred HHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 333334333 456777777777778888888777767777777776443 233344332 26788888654
No 374
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=23.61 E-value=1.5e+02 Score=18.92 Aligned_cols=82 Identities=10% Similarity=0.090 Sum_probs=47.9
Q ss_pred EEEcCCchhHHHHHHHHHhccCCCCEEEEecchHHHHHHHHHhh-----c--CCCeeEEEecCCCHHHHHHHHHHhhcC-
Q 042003 138 LVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKERAKELYGELA-----F--DGIRAGVIHSDLSQTQRENAVDDFRAG- 209 (248)
Q Consensus 138 ~~~~~~~~~~~~~l~~~~~~~~~~~~liF~~~~~~~~~l~~~L~-----~--~~~~v~~~~~~~~~~~r~~~~~~f~~g- 209 (248)
++.++++......+...++.......+..+.+..++........ . ..+.+.++.-.++...-.+.++.+++.
T Consensus 9 iLivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~ 88 (149)
T 1k66_A 9 LLVVEDSDEDFSTFQRLLQREGVVNPIYRCITGDQALDFLYQTGSYCNPDIAPRPAVILLDLNLPGTDGREVLQEIKQDE 88 (149)
T ss_dssp EEEECCCHHHHHHHHHHHHHTTBCSCEEEECSHHHHHHHHHTCCSSSCGGGCCCCSEEEECSCCSSSCHHHHHHHHTTST
T ss_pred EEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHHhcccccCcccCCCCcEEEEECCCCCCCHHHHHHHHHhCc
Confidence 45566777777778888877533224555666555544332211 0 456788887777655556666666653
Q ss_pred ---CceEEEEecc
Q 042003 210 ---KTWVLIATDV 219 (248)
Q Consensus 210 ---~~~ilv~T~~ 219 (248)
...+++.|..
T Consensus 89 ~~~~~~ii~~t~~ 101 (149)
T 1k66_A 89 VLKKIPVVIMTTS 101 (149)
T ss_dssp TGGGSCEEEEESC
T ss_pred ccCCCeEEEEeCC
Confidence 3456666543
No 375
>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}
Probab=23.57 E-value=2.1e+02 Score=21.64 Aligned_cols=61 Identities=11% Similarity=0.087 Sum_probs=39.0
Q ss_pred CEEEEecchHHHHHHHHHhhcCCCeeEEEecCCCHHHHHHHHHHhhcCCceEEEEecccccCCC
Q 042003 162 PVLIFVQSKERAKELYGELAFDGIRAGVIHSDLSQTQRENAVDDFRAGKTWVLIATDVIARGMD 225 (248)
Q Consensus 162 ~~liF~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gid 225 (248)
-++|-+.+.+.+........+.+.++..-..+++.++..++.+.-+ +..++.+++ ++.|++
T Consensus 75 DVVIDfT~p~a~~~~~~~al~~G~~vVigTTG~s~~~~~~L~~aa~--~~~vv~a~N-~s~Gv~ 135 (272)
T 4f3y_A 75 DYLIDFTLPEGTLVHLDAALRHDVKLVIGTTGFSEPQKAQLRAAGE--KIALVFSAN-MSVGVN 135 (272)
T ss_dssp SEEEECSCHHHHHHHHHHHHHHTCEEEECCCCCCHHHHHHHHHHTT--TSEEEECSC-CCHHHH
T ss_pred CEEEEcCCHHHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHhc--cCCEEEECC-CCHHHH
Confidence 5676666666666666666777878777677788776666555533 355666655 335544
No 376
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=23.55 E-value=28 Score=25.13 Aligned_cols=14 Identities=36% Similarity=0.515 Sum_probs=11.8
Q ss_pred cee--EEEEecccccc
Q 042003 61 RVE--YLVLDEADKLF 74 (248)
Q Consensus 61 ~~~--~lIiDEah~~~ 74 (248)
+.+ ++|+||...+.
T Consensus 121 ~~~~~llilDe~~~~~ 136 (235)
T 2w0m_A 121 GYGKARLVIDSVSALF 136 (235)
T ss_dssp CSSCEEEEEETGGGGS
T ss_pred CCCceEEEEECchHhh
Confidence 567 99999999765
No 377
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=23.42 E-value=3e+02 Score=22.30 Aligned_cols=56 Identities=13% Similarity=0.133 Sum_probs=35.1
Q ss_pred cchHHHHHHHHHhhcCCCeeEEEe-cCCCHHHHHHHHHHhhcCCceEEEEecccccCC
Q 042003 168 QSKERAKELYGELAFDGIRAGVIH-SDLSQTQRENAVDDFRAGKTWVLIATDVIARGM 224 (248)
Q Consensus 168 ~~~~~~~~l~~~L~~~~~~v~~~~-~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gi 224 (248)
+|.+-|+.+++.|.+.|..+..+. ...+..+..+++....+.+ .++++|++...|+
T Consensus 278 nTe~mA~~ia~gl~~~Gv~~~~~~~~d~~~~~~s~i~~~i~~~~-~ivlGspT~~~~~ 334 (410)
T 4dik_A 278 FVENVMKKAIDSLKEKGFTPVVYKFSDEERPAISEILKDIPDSE-ALIFGVSTYEAEI 334 (410)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEEECSSCCCCHHHHHHHSTTCS-EEEEEECCTTSSS
T ss_pred hHHHHHHHHHHHHHhcCCceEEEEeccCCCCCHHHHHHHHHhCC-eEEEEeCCcCCcC
Confidence 557788899999999888765442 1223333445555544443 4778888766543
No 378
>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics,struct proteomics in europe, spine; 2.70A {Klebsiella pneumoniae}
Probab=23.35 E-value=2.8e+02 Score=22.10 Aligned_cols=67 Identities=10% Similarity=0.122 Sum_probs=41.1
Q ss_pred HHHHHhccCCCCEEEEecch--H----HHHHHHHHhhcCCCeeEEEecC---CCHHHHHHHHHHhhcCCceEEEEe
Q 042003 151 LRQSFAESLNPPVLIFVQSK--E----RAKELYGELAFDGIRAGVIHSD---LSQTQRENAVDDFRAGKTWVLIAT 217 (248)
Q Consensus 151 l~~~~~~~~~~~~liF~~~~--~----~~~~l~~~L~~~~~~v~~~~~~---~~~~~r~~~~~~f~~g~~~ilv~T 217 (248)
+.++++....++++|.+... + ..+++.+.|++.++.+..+.+. -+.+.-.+..+.+++...+++|+-
T Consensus 24 l~~~l~~~g~~~~livtd~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIav 99 (387)
T 3bfj_A 24 VGERCQLLGGKKALLVTDKGLRAIKDGAVDKTLHYLREAGIEVAIFDGVEPNPKDTNVRDGLAVFRREQCDIIVTV 99 (387)
T ss_dssp HHHHHHHTTCSEEEEECCTTTC--CCSSHHHHHHHHHHTTCEEEEECCCCSSCBHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHcCCCEEEEEECcchhhccchHHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHhcCCCEEEEe
Confidence 33444443236777777542 2 4677888888777777666543 234555667777777777777754
No 379
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=23.30 E-value=31 Score=25.70 Aligned_cols=15 Identities=20% Similarity=0.138 Sum_probs=12.7
Q ss_pred CceeEEEEecccccc
Q 042003 60 SRVEYLVLDEADKLF 74 (248)
Q Consensus 60 ~~~~~lIiDEah~~~ 74 (248)
.++++|++||++-+.
T Consensus 89 ~~~dvViIDEaQF~~ 103 (234)
T 2orv_A 89 LGVAVIGIDEGQFFP 103 (234)
T ss_dssp TTCSEEEESSGGGCT
T ss_pred ccCCEEEEEchhhhh
Confidence 457899999999864
No 380
>3olh_A MST, 3-mercaptopyruvate sulfurtransferase; structural genomics, structural genomics consortium, SGC, RH fold; 2.50A {Homo sapiens}
Probab=23.28 E-value=60 Score=24.99 Aligned_cols=35 Identities=17% Similarity=0.206 Sum_probs=26.1
Q ss_pred CCCEEEEecch---HHHHHHHHHhhcCCCe-eEEEecCC
Q 042003 160 NPPVLIFVQSK---ERAKELYGELAFDGIR-AGVIHSDL 194 (248)
Q Consensus 160 ~~~~liF~~~~---~~~~~l~~~L~~~~~~-v~~~~~~~ 194 (248)
..+++|||.+. ..+.+++..|+..|+. +..+.||+
T Consensus 107 ~~~VVvyc~~~~g~~~a~ra~~~L~~~G~~~V~~L~GG~ 145 (302)
T 3olh_A 107 ATHVVIYDASDQGLYSAPRVWWMFRAFGHHAVSLLDGGL 145 (302)
T ss_dssp SCEEEEECCCTTSCSSHHHHHHHHHHTTCCCEEEETTHH
T ss_pred CCEEEEEeCCCCCcchHHHHHHHHHHcCCCcEEECCCCH
Confidence 56889999642 3477888889888874 88887764
No 381
>2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix}
Probab=23.16 E-value=1.5e+02 Score=22.85 Aligned_cols=57 Identities=19% Similarity=0.166 Sum_probs=36.0
Q ss_pred CCCEEEEecchHHHHHHHHHhhcCCCe-eEEEecCCCHHHHHHHHHHhhcCCceEEEEec
Q 042003 160 NPPVLIFVQSKERAKELYGELAFDGIR-AGVIHSDLSQTQRENAVDDFRAGKTWVLIATD 218 (248)
Q Consensus 160 ~~~~liF~~~~~~~~~l~~~L~~~~~~-v~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~ 218 (248)
..=+++|++.....+. .+...+.+.+ +.++..+++.++..++.+.-++.... +++-+
T Consensus 72 ~DvaIi~vp~~~~~~~-v~ea~~~Gi~~vVi~t~G~~~~~~~~l~~~A~~~gi~-viGPN 129 (297)
T 2yv2_A 72 INTSIVFVPAPFAPDA-VYEAVDAGIRLVVVITEGIPVHDTMRFVNYARQKGAT-IIGPN 129 (297)
T ss_dssp CCEEEECCCGGGHHHH-HHHHHHTTCSEEEECCCCCCHHHHHHHHHHHHHHTCE-EECSS
T ss_pred CCEEEEecCHHHHHHH-HHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCE-EEcCC
Confidence 3456677777554444 4455556777 66678889988777777766654443 44444
No 382
>1t70_A Phosphatase; crystal, X-RAY crystallography, structural GENO berkeley structural genomics center, BSGC, PSI, protein STR initiative; 2.30A {Deinococcus radiodurans} SCOP: d.159.1.9
Probab=23.13 E-value=80 Score=23.83 Aligned_cols=52 Identities=15% Similarity=0.055 Sum_probs=34.1
Q ss_pred EecchHHHHHHHHHhhcCCCeeEEEecCCCHHHHHHHHHHhhcCCceEEEEeccc
Q 042003 166 FVQSKERAKELYGELAFDGIRAGVIHSDLSQTQRENAVDDFRAGKTWVLIATDVI 220 (248)
Q Consensus 166 F~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~ 220 (248)
|.+-.+.++++.+.| .-++-+...|++.+.+ ++. +..+-.|+++++|+|..-
T Consensus 124 ~~~p~~~~~~~v~~l-~~d~IIv~~H~e~t~E-k~~-la~~~dg~vd~VvGgHTH 175 (255)
T 1t70_A 124 VDNPFRTMDALLERD-DLGTVFVDFHAEATSE-KEA-MGWHLAGRVAAVIGTHTH 175 (255)
T ss_dssp CSCHHHHHHHHTTCS-SCCEEEEEEECSCHHH-HHH-HHHHHTTSSSEEEEESSC
T ss_pred ccCHHHHHHHHHHHh-CCCEEEEEeCCCChHH-HHH-HHHhCCCCeEEEEeCCCC
Confidence 333445666666666 4455677889887554 333 444567889999999754
No 383
>1c25_A CDC25A; hydrolase, cell cycle phosphatase,dual specificity protein phosphatase, CDK2; 2.30A {Homo sapiens} SCOP: c.46.1.1
Probab=22.88 E-value=33 Score=23.44 Aligned_cols=36 Identities=14% Similarity=0.095 Sum_probs=24.1
Q ss_pred CCCE--EEEec-chHHHHHHHHHhhc----------CCC-eeEEEecCCC
Q 042003 160 NPPV--LIFVQ-SKERAKELYGELAF----------DGI-RAGVIHSDLS 195 (248)
Q Consensus 160 ~~~~--liF~~-~~~~~~~l~~~L~~----------~~~-~v~~~~~~~~ 195 (248)
++++ ++||. +-..+...+..|++ .|+ ++..+.||+.
T Consensus 87 ~~~ivvv~yC~~sg~rs~~aa~~L~~~~~~~~~l~~~G~~~v~~l~GG~~ 136 (161)
T 1c25_A 87 GKRVIVVFHCEFSSERGPRMCRYVRERDRLGNEYPKLHYPELYVLKGGYK 136 (161)
T ss_dssp TSEEEEEEECSSSSSHHHHHHHHHHHHHHHTSSTTCCSSCCEEEETTHHH
T ss_pred CCCeEEEEEcCCCCcchHHHHHHHHHHHHhhhhccccCCceEEEEcCCHH
Confidence 3454 45687 65666667777764 376 6889999854
No 384
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=22.84 E-value=2.1e+02 Score=20.29 Aligned_cols=81 Identities=10% Similarity=-0.056 Sum_probs=51.5
Q ss_pred EEEEcCCchhHHHHHHHHHhccCCCCEEEEecchHHHHHHHHHhhcCCCeeEEEecCCCHHHHHHHHHHhhc---CCceE
Q 042003 137 KLVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKERAKELYGELAFDGIRAGVIHSDLSQTQRENAVDDFRA---GKTWV 213 (248)
Q Consensus 137 ~~~~~~~~~~~~~~l~~~~~~~~~~~~liF~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~r~~~~~~f~~---g~~~i 213 (248)
.++.++++......+..+++...+-.++..+. ...+.+...+....+.+.++.-.|+..+-.+.++.+++ ....|
T Consensus 9 ~IlivdD~~~~~~~l~~~L~~~~~~~v~~~~~--~~~~~~~~~~~~~~~dlvllD~~mp~~~G~~~~~~lr~~~~~~~~i 86 (225)
T 3klo_A 9 NVRMLSDVCMQSRLLKEALESKLPLALEITPF--SELWLEENKPESRSIQMLVIDYSRISDDVLTDYSSFKHISCPDAKE 86 (225)
T ss_dssp EEEEESCCSHHHHHHHHHHHHHSSEEEEEECG--GGHHHHTTCSGGGGCCEEEEEGGGCCHHHHHHHHHHHHHHCTTCEE
T ss_pred EEEEEcCcHHHHHHHHHHHhhCCCceEEEEeC--CcHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHhhCCCCcE
Confidence 45667777778888888887543333333332 22333333455666788999888888777777777654 35667
Q ss_pred EEEecc
Q 042003 214 LIATDV 219 (248)
Q Consensus 214 lv~T~~ 219 (248)
++.|..
T Consensus 87 i~lt~~ 92 (225)
T 3klo_A 87 VIINCP 92 (225)
T ss_dssp EEEEEC
T ss_pred EEEECC
Confidence 766653
No 385
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=22.73 E-value=1.4e+02 Score=18.45 Aligned_cols=77 Identities=10% Similarity=-0.064 Sum_probs=44.3
Q ss_pred EEEcCCchhHHHHHHHHHhccCCCCEEEEecchHHHHHHHHHhhcCCCeeEEEecCCCHHHHHHHHHHhhc--CCceEEE
Q 042003 138 LVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKERAKELYGELAFDGIRAGVIHSDLSQTQRENAVDDFRA--GKTWVLI 215 (248)
Q Consensus 138 ~~~~~~~~~~~~~l~~~~~~~~~~~~liF~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~r~~~~~~f~~--g~~~ilv 215 (248)
++.++++......+...+... +- .+..+.+..++ .+.+....+.+.++.-.|+...-.+.++.+++ ....+++
T Consensus 6 ilivdd~~~~~~~l~~~l~~~-~~-~v~~~~~~~~~---~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~ 80 (126)
T 1dbw_A 6 VHIVDDEEPVRKSLAFMLTMN-GF-AVKMHQSAEAF---LAFAPDVRNGVLVTDLRMPDMSGVELLRNLGDLKINIPSIV 80 (126)
T ss_dssp EEEEESSHHHHHHHHHHHHHT-TC-EEEEESCHHHH---HHHGGGCCSEEEEEECCSTTSCHHHHHHHHHHTTCCCCEEE
T ss_pred EEEEcCCHHHHHHHHHHHHhC-Cc-EEEEeCCHHHH---HHHHhcCCCCEEEEECCCCCCCHHHHHHHHHhcCCCCCEEE
Confidence 445666666677777777764 22 34455554433 34555666778888766655444455555543 3456666
Q ss_pred Eecc
Q 042003 216 ATDV 219 (248)
Q Consensus 216 ~T~~ 219 (248)
.|..
T Consensus 81 ~s~~ 84 (126)
T 1dbw_A 81 ITGH 84 (126)
T ss_dssp EECT
T ss_pred EECC
Confidence 6643
No 386
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=22.54 E-value=1.3e+02 Score=19.11 Aligned_cols=78 Identities=9% Similarity=0.002 Sum_probs=42.7
Q ss_pred EEEEcCCchhHHHHHHHHHhccCCCCEEE-EecchHHHHHHHHHhhcCCCeeEEEecCCC-HHHHHHHHHHhhc-CCceE
Q 042003 137 KLVFAGSEEGKLLALRQSFAESLNPPVLI-FVQSKERAKELYGELAFDGIRAGVIHSDLS-QTQRENAVDDFRA-GKTWV 213 (248)
Q Consensus 137 ~~~~~~~~~~~~~~l~~~~~~~~~~~~li-F~~~~~~~~~l~~~L~~~~~~v~~~~~~~~-~~~r~~~~~~f~~-g~~~i 213 (248)
.++.+++.......+...+... +- .++ .+.+..++... +....+.+.++.-.++ ..+-.+.++.+++ ....+
T Consensus 11 ~iLivdd~~~~~~~l~~~L~~~-g~-~v~~~~~~~~~a~~~---~~~~~~dlii~d~~~~~~~~g~~~~~~l~~~~~~~i 85 (140)
T 3cg0_A 11 GVLIVEDGRLAAATLRIQLESL-GY-DVLGVFDNGEEAVRC---APDLRPDIALVDIMLCGALDGVETAARLAAGCNLPI 85 (140)
T ss_dssp EEEEECCBHHHHHHHHHHHHHH-TC-EEEEEESSHHHHHHH---HHHHCCSEEEEESSCCSSSCHHHHHHHHHHHSCCCE
T ss_pred eEEEEECCHHHHHHHHHHHHHC-CC-eeEEEECCHHHHHHH---HHhCCCCEEEEecCCCCCCCHHHHHHHHHhCCCCCE
Confidence 3556777777777788888764 33 344 36665555443 3334567777775553 2222333333332 34566
Q ss_pred EEEecc
Q 042003 214 LIATDV 219 (248)
Q Consensus 214 lv~T~~ 219 (248)
++.|+.
T Consensus 86 i~ls~~ 91 (140)
T 3cg0_A 86 IFITSS 91 (140)
T ss_dssp EEEECC
T ss_pred EEEecC
Confidence 666543
No 387
>3ju3_A Probable 2-oxoacid ferredoxin oxidoreductase, ALP; structural genomics, PSI-2, protein structu initiative; 1.90A {Thermoplasma acidophilum}
Probab=22.41 E-value=66 Score=20.82 Aligned_cols=34 Identities=15% Similarity=0.260 Sum_probs=25.6
Q ss_pred CCEEEEe--cchHHHHHHHHHhhcCCCeeEEEecCC
Q 042003 161 PPVLIFV--QSKERAKELYGELAFDGIRAGVIHSDL 194 (248)
Q Consensus 161 ~~~liF~--~~~~~~~~l~~~L~~~~~~v~~~~~~~ 194 (248)
..++|.+ ++...+...++.|++.|+++.+++-.+
T Consensus 14 ~dv~iv~~Gs~~~~a~eA~~~L~~~Gi~v~vi~~r~ 49 (118)
T 3ju3_A 14 ADITFVTWGSQKGPILDVIEDLKEEGISANLLYLKM 49 (118)
T ss_dssp CSEEEEEEGGGHHHHHHHHHHHHHTTCCEEEEEECS
T ss_pred CCEEEEEECccHHHHHHHHHHHHHCCCceEEEEECe
Confidence 3444443 567888888999999999999998653
No 388
>1jr5_A 10 kDa anti-sigma factor; all-alpha, helix-turn-helix, coiled-coil, transcription; NMR {Enterobacteria phage T4} SCOP: a.150.1.1 PDB: 1tkv_A 1tl6_A 1tlh_A
Probab=22.34 E-value=24 Score=21.65 Aligned_cols=22 Identities=32% Similarity=0.608 Sum_probs=18.5
Q ss_pred EecCCCHHHHHHHHHHhhcCCc
Q 042003 190 IHSDLSQTQRENAVDDFRAGKT 211 (248)
Q Consensus 190 ~~~~~~~~~r~~~~~~f~~g~~ 211 (248)
..+++++++|+++++.|..|.-
T Consensus 57 m~~~lt~~ek~elieeFn~G~e 78 (90)
T 1jr5_A 57 IVSELTQEDKKTLIDEFNEGFE 78 (90)
T ss_dssp HHHTCCHHHHHHHHTTSSSSST
T ss_pred HHHHCCHHHHHHHHHHHhccch
Confidence 3467899999999999998864
No 389
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=22.31 E-value=2.2e+02 Score=23.07 Aligned_cols=34 Identities=18% Similarity=0.284 Sum_probs=25.0
Q ss_pred CCCEEEEecchHHHHHHHHHhhcCCCeeEEEecCCC
Q 042003 160 NPPVLIFVQSKERAKELYGELAFDGIRAGVIHSDLS 195 (248)
Q Consensus 160 ~~~~liF~~~~~~~~~l~~~L~~~~~~v~~~~~~~~ 195 (248)
+.++++.+|++.-++++++.++ +.++..+.|++.
T Consensus 31 g~~~lvl~Pt~~La~Q~~~~~~--~~~v~~~~~~~~ 64 (431)
T 2v6i_A 31 RLRTVILAPTRVVASEMYEALR--GEPIRYMTPAVQ 64 (431)
T ss_dssp TCCEEEEESSHHHHHHHHHHTT--TSCEEEC-----
T ss_pred CCCEEEECcHHHHHHHHHHHhC--CCeEEEEecCcc
Confidence 5799999999999999999987 567776666543
No 390
>4ehd_A Caspase-3; caspase, apoptosis, allosteric inhibition; 1.58A {Homo sapiens} PDB: 4ehk_A 4ehf_A 4ehn_A 1cp3_A 4ehh_A 4eha_A 4ehl_A 1i3o_A
Probab=22.27 E-value=1.5e+02 Score=22.54 Aligned_cols=40 Identities=13% Similarity=0.075 Sum_probs=31.2
Q ss_pred chHHHHHHHHHhhcCCCeeEEEecCCCHHHHHHHHHHhhcC
Q 042003 169 SKERAKELYGELAFDGIRAGVIHSDLSQTQRENAVDDFRAG 209 (248)
Q Consensus 169 ~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~r~~~~~~f~~g 209 (248)
+..+++.+.+.|+..|+.|.. +..++.++-.+.++.|.+.
T Consensus 67 t~~D~~~L~~~f~~LGF~V~~-~~dlt~~em~~~l~~f~~~ 106 (277)
T 4ehd_A 67 TDVDAANLRETFRNLKYEVRN-KNDLTREEIVELMRDVSKE 106 (277)
T ss_dssp HHHHHHHHHHHHHHTTCEEEE-EESCCHHHHHHHHHHHHTS
T ss_pred CHHHHHHHHHHHHHCCCEEEE-ecCCCHHHHHHHHHHHHhh
Confidence 345888999999999998754 5668888888888888653
No 391
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=22.19 E-value=1.6e+02 Score=18.72 Aligned_cols=77 Identities=10% Similarity=0.010 Sum_probs=45.7
Q ss_pred EEEcCCchhHHHHHHHHHhccCCCCEEEEecchHHHHHHHHHhhcCCCeeEEEecCCCHHHHHHHHHHhhc----CCceE
Q 042003 138 LVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKERAKELYGELAFDGIRAGVIHSDLSQTQRENAVDDFRA----GKTWV 213 (248)
Q Consensus 138 ~~~~~~~~~~~~~l~~~~~~~~~~~~liF~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~r~~~~~~f~~----g~~~i 213 (248)
++.++++......+...++.. +- .++.+.+..++-. .+....+.+.++.-.|+..+-.+.++.+++ ....|
T Consensus 6 ILivdd~~~~~~~l~~~L~~~-g~-~v~~~~~~~~al~---~l~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~i 80 (138)
T 3c3m_A 6 ILVVDDSPMIVDVFVTMLERG-GY-RPITAFSGEECLE---ALNATPPDLVLLDIMMEPMDGWETLERIKTDPATRDIPV 80 (138)
T ss_dssp EEEECSCHHHHHHHHHHHHHT-TC-EEEEESSHHHHHH---HHHHSCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCE
T ss_pred EEEEeCCHHHHHHHHHHHHHc-Cc-eEEEeCCHHHHHH---HHhccCCCEEEEeCCCCCCCHHHHHHHHHcCcccCCCCE
Confidence 455677777777787877764 33 3445555544433 444556778888766665444555555543 24567
Q ss_pred EEEecc
Q 042003 214 LIATDV 219 (248)
Q Consensus 214 lv~T~~ 219 (248)
++.|..
T Consensus 81 i~ls~~ 86 (138)
T 3c3m_A 81 LMLTAK 86 (138)
T ss_dssp EEEESS
T ss_pred EEEECC
Confidence 766643
No 392
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=22.07 E-value=1.6e+02 Score=18.75 Aligned_cols=79 Identities=8% Similarity=-0.021 Sum_probs=43.9
Q ss_pred EEEEcCCchhHHHHHHHHHhccCCCCEEEEecchHHHHHHHHHhhc-CCCeeEEEecCCCH-HHHHHHHHHhhc-CCceE
Q 042003 137 KLVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKERAKELYGELAF-DGIRAGVIHSDLSQ-TQRENAVDDFRA-GKTWV 213 (248)
Q Consensus 137 ~~~~~~~~~~~~~~l~~~~~~~~~~~~liF~~~~~~~~~l~~~L~~-~~~~v~~~~~~~~~-~~r~~~~~~f~~-g~~~i 213 (248)
.++.++++......+...+... +- .+..+.+..++. +.+.. ..+.+.++.-.++. ..-.+.++.+++ ....+
T Consensus 7 ~ilivdd~~~~~~~l~~~L~~~-g~-~v~~~~~~~~a~---~~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l~~~~~~~i 81 (140)
T 3h5i_A 7 KILIVEDSKFQAKTIANILNKY-GY-TVEIALTGEAAV---EKVSGGWYPDLILMDIELGEGMDGVQTALAIQQISELPV 81 (140)
T ss_dssp EEEEECSCHHHHHHHHHHHHHT-TC-EEEEESSHHHHH---HHHHTTCCCSEEEEESSCSSSCCHHHHHHHHHHHCCCCE
T ss_pred EEEEEeCCHHHHHHHHHHHHHc-CC-EEEEecChHHHH---HHHhcCCCCCEEEEeccCCCCCCHHHHHHHHHhCCCCCE
Confidence 4556777777778888888775 33 344455544443 33433 45677777765542 233333333332 45567
Q ss_pred EEEeccc
Q 042003 214 LIATDVI 220 (248)
Q Consensus 214 lv~T~~~ 220 (248)
++.|...
T Consensus 82 i~ls~~~ 88 (140)
T 3h5i_A 82 VFLTAHT 88 (140)
T ss_dssp EEEESSS
T ss_pred EEEECCC
Confidence 7666543
No 393
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=21.96 E-value=1.6e+02 Score=18.59 Aligned_cols=52 Identities=12% Similarity=0.055 Sum_probs=35.0
Q ss_pred CCCEEEEec------chHHHHHHHHHhhcCCCeeEEEecCCCHHHHHHHHHHhhcCCc
Q 042003 160 NPPVLIFVQ------SKERAKELYGELAFDGIRAGVIHSDLSQTQRENAVDDFRAGKT 211 (248)
Q Consensus 160 ~~~~liF~~------~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~ 211 (248)
..+++||.. +=-.|.++.+.|.+.++....+.=..+++.++...+.......
T Consensus 15 ~~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~gi~y~~~di~~d~~~~~~l~~~~g~~tv 72 (111)
T 3zyw_A 15 AAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFSDEEVRQGLKAYSSWPTY 72 (111)
T ss_dssp SSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHHTCCSS
T ss_pred cCCEEEEEecCCCCCcchhHHHHHHHHHHcCCCeEEEECcCCHHHHHHHHHHHCCCCC
Confidence 469999984 3457889999999988877766555556655555544333333
No 394
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=21.92 E-value=1.7e+02 Score=23.60 Aligned_cols=38 Identities=11% Similarity=0.080 Sum_probs=22.8
Q ss_pred eeEEEEeccccccccCcccccchhHhhhCCCccceeEEEEee
Q 042003 62 VEYLVLDEADKLFEVGNLLKHIDPVVKACSNPSIVRSLFSAT 103 (248)
Q Consensus 62 ~~~lIiDEah~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT 103 (248)
--++++||+|.+... +.+..+++...+....+++.+=+
T Consensus 280 ~~~~~lDE~~~l~~~----~~l~~~~~~~R~~g~~~~~~~Qs 317 (437)
T 1e9r_A 280 RLWLFIDELASLEKL----ASLADALTKGRKAGLRVVAGLQS 317 (437)
T ss_dssp CEEEEESCGGGSCBC----SSHHHHHHHCTTTTEEEEEEESC
T ss_pred cEEEEEEcccccccc----hhHHHHHHHHhccCCEEEEEecC
Confidence 358999999998652 24555555544455554444333
No 395
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=21.92 E-value=1.6e+02 Score=18.51 Aligned_cols=78 Identities=10% Similarity=0.186 Sum_probs=46.8
Q ss_pred EEEcCCchhHHHHHHHHHhccCCCCEEEEecchHHHHHHHHHhhc-------CCCeeEEEecCCCHHHHHHHHHHhhc--
Q 042003 138 LVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKERAKELYGELAF-------DGIRAGVIHSDLSQTQRENAVDDFRA-- 208 (248)
Q Consensus 138 ~~~~~~~~~~~~~l~~~~~~~~~~~~liF~~~~~~~~~l~~~L~~-------~~~~v~~~~~~~~~~~r~~~~~~f~~-- 208 (248)
++.++++......+...++.......+..+.+..++.. .+.. ..+.+.++.-.++...-.+.++.+++
T Consensus 5 ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~---~l~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~ 81 (140)
T 1k68_A 5 IFLVEDNKADIRLIQEALANSTVPHEVVTVRDGMEAMA---YLRQEGEYANASRPDLILLXLNLPKKDGREVLAEIKSDP 81 (140)
T ss_dssp EEEECCCHHHHHHHHHHHHTCSSCCEEEEECSHHHHHH---HHTTCGGGGSCCCCSEEEECSSCSSSCHHHHHHHHHHST
T ss_pred EEEEeCCHHHHHHHHHHHHhcCCCceEEEECCHHHHHH---HHHcccccccCCCCcEEEEecCCCcccHHHHHHHHHcCc
Confidence 44566666677788888877533335666666555544 3333 45778888777665444555555554
Q ss_pred --CCceEEEEec
Q 042003 209 --GKTWVLIATD 218 (248)
Q Consensus 209 --g~~~ilv~T~ 218 (248)
....+++.|+
T Consensus 82 ~~~~~pii~ls~ 93 (140)
T 1k68_A 82 TLKRIPVVVLST 93 (140)
T ss_dssp TGGGSCEEEEES
T ss_pred ccccccEEEEec
Confidence 2345665554
No 396
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=21.91 E-value=39 Score=27.07 Aligned_cols=14 Identities=21% Similarity=0.422 Sum_probs=11.2
Q ss_pred eeEEEEeccccccc
Q 042003 62 VEYLVLDEADKLFE 75 (248)
Q Consensus 62 ~~~lIiDEah~~~~ 75 (248)
-.+|++||+|.+..
T Consensus 208 ~~il~iDEid~l~~ 221 (389)
T 3vfd_A 208 PSIIFIDQVDSLLC 221 (389)
T ss_dssp SEEEEEETGGGGC-
T ss_pred CeEEEEECchhhcc
Confidence 36999999999853
No 397
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=21.86 E-value=39 Score=27.32 Aligned_cols=15 Identities=0% Similarity=0.144 Sum_probs=12.1
Q ss_pred ceeEEEEeccccccc
Q 042003 61 RVEYLVLDEADKLFE 75 (248)
Q Consensus 61 ~~~~lIiDEah~~~~ 75 (248)
+.+++|+||+|.+.+
T Consensus 273 ~~~~viiDE~a~~~~ 287 (385)
T 2o0j_A 273 SFAMIYIEDCAFIPN 287 (385)
T ss_dssp CCSEEEEESGGGSTT
T ss_pred CCCEEEechhhhcCC
Confidence 356899999999764
No 398
>3ce9_A Glycerol dehydrogenase; NP_348253.1, 3-dehydroquinate syntha structural genomics, joint center for structural genomics; HET: MSE; 2.37A {Clostridium acetobutylicum atcc 824}
Probab=21.83 E-value=2.9e+02 Score=21.62 Aligned_cols=18 Identities=6% Similarity=-0.195 Sum_probs=8.8
Q ss_pred chHHHHHHHHHhhcCCCee
Q 042003 169 SKERAKELYGELAFDGIRA 187 (248)
Q Consensus 169 ~~~~~~~l~~~L~~~~~~v 187 (248)
+.+.++++ +.+++.+..+
T Consensus 74 ~~~~v~~~-~~~~~~~~d~ 91 (354)
T 3ce9_A 74 DFDEIGTN-AFKIPAEVDA 91 (354)
T ss_dssp BHHHHHHH-HTTSCTTCCE
T ss_pred CHHHHHHH-HHhhhcCCCE
Confidence 44555555 5554444433
No 399
>3r2u_A Metallo-beta-lactamase family protein; structural genomics, for structural genomics of infectious diseases, csgid, HYDR; 2.10A {Staphylococcus aureus}
Probab=21.51 E-value=20 Score=29.80 Aligned_cols=36 Identities=19% Similarity=0.201 Sum_probs=0.0
Q ss_pred CCCEEEEecchHHHHHHHHHhhcCCC-eeEEEecCCC
Q 042003 160 NPPVLIFVQSKERAKELYGELAFDGI-RAGVIHSDLS 195 (248)
Q Consensus 160 ~~~~liF~~~~~~~~~l~~~L~~~~~-~v~~~~~~~~ 195 (248)
++++++||.+-..+...+..|+..|+ ++..+.|++.
T Consensus 425 ~~~iv~~C~~G~rs~~a~~~L~~~G~~~v~~l~GG~~ 461 (466)
T 3r2u_A 425 NDVIYVHCQSGIRSSIAIGILEHKGYHNIINVNEGYK 461 (466)
T ss_dssp -------------------------------------
T ss_pred CCeEEEECCCChHHHHHHHHHHHcCCCCEEEecChHH
Confidence 56899999998888888999998888 7888888875
No 400
>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii}
Probab=21.43 E-value=2e+02 Score=22.01 Aligned_cols=57 Identities=18% Similarity=0.098 Sum_probs=36.1
Q ss_pred CCCEEEEecchHHHHHHHHHhhcCCCe-eEEEecCCCHHHHHHHHHHhhcCCceEEEEec
Q 042003 160 NPPVLIFVQSKERAKELYGELAFDGIR-AGVIHSDLSQTQRENAVDDFRAGKTWVLIATD 218 (248)
Q Consensus 160 ~~~~liF~~~~~~~~~l~~~L~~~~~~-v~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~ 218 (248)
..-+++|++.....+. .+...+.+.+ +..+..+++.++..++.+.-++.... +++-+
T Consensus 71 ~Dv~ii~vp~~~~~~~-v~ea~~~Gi~~vVi~t~G~~~~~~~~l~~~A~~~gi~-viGPN 128 (294)
T 2yv1_A 71 ANASVIFVPAPFAKDA-VFEAIDAGIELIVVITEHIPVHDTMEFVNYAEDVGVK-IIGPN 128 (294)
T ss_dssp CCEEEECCCHHHHHHH-HHHHHHTTCSEEEECCSCCCHHHHHHHHHHHHHHTCE-EECSS
T ss_pred CCEEEEccCHHHHHHH-HHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCE-EEcCC
Confidence 4556677777554444 4445556777 56668889988777777776654443 44444
No 401
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=21.40 E-value=2.3e+02 Score=20.76 Aligned_cols=79 Identities=9% Similarity=-0.032 Sum_probs=43.7
Q ss_pred eEEEEcCCchhHHHHHHHHHhccCCCCEEEEecchHHHHHHHHHhhcCCCeeEEEecCCCHHHHHHHHHHhhc--CCceE
Q 042003 136 QKLVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKERAKELYGELAFDGIRAGVIHSDLSQTQRENAVDDFRA--GKTWV 213 (248)
Q Consensus 136 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~liF~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~r~~~~~~f~~--g~~~i 213 (248)
..++.++++......+..+++.. +-. +..+.+-.++-.. ++...+.+.++.-.|+..+-.+..+.+++ ....|
T Consensus 130 ~~ILivdd~~~~~~~l~~~L~~~-g~~-v~~a~~~~eal~~---l~~~~~dlvl~D~~mp~~~G~~l~~~ir~~~~~~pi 204 (254)
T 2ayx_A 130 MMILVVDDHPINRRLLADQLGSL-GYQ-CKTANDGVDALNV---LSKNHIDIVLSDVNMPNMDGYRLTQRIRQLGLTLPV 204 (254)
T ss_dssp CEEEEEESSHHHHHHHHHHHHHH-TSE-EEEECCSHHHHHH---HHHSCCSEEEEEESSCSSCCHHHHHHHHHHHCCSCE
T ss_pred CEEEEEeCCHHHHHHHHHHHHHc-CCE-EEEECCHHHHHHH---HHhCCCCEEEEcCCCCCCCHHHHHHHHHhcCCCCcE
Confidence 34566777777777777777765 333 4455555544433 34445677777655554333333333332 24566
Q ss_pred EEEecc
Q 042003 214 LIATDV 219 (248)
Q Consensus 214 lv~T~~ 219 (248)
++.|..
T Consensus 205 I~lt~~ 210 (254)
T 2ayx_A 205 IGVTAN 210 (254)
T ss_dssp EEEESS
T ss_pred EEEECC
Confidence 666653
No 402
>3sxu_A DNA polymerase III subunit CHI; DNA replication, CHI binds to SSB and PSI, transferase; HET: DNA; 1.85A {Escherichia coli} SCOP: c.128.1.1 PDB: 1em8_A*
Probab=21.11 E-value=1.7e+02 Score=19.87 Aligned_cols=80 Identities=19% Similarity=0.017 Sum_probs=46.8
Q ss_pred HHHHHHHHHhcc--CCCCEEEEecchHHHHHHHHHhhcCCCeeEEEecCCCHHHHHHHHHHhhcCCceEEEEecccccCC
Q 042003 147 KLLALRQSFAES--LNPPVLIFVQSKERAKELYGELAFDGIRAGVIHSDLSQTQRENAVDDFRAGKTWVLIATDVIARGM 224 (248)
Q Consensus 147 ~~~~l~~~~~~~--~~~~~liF~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~Gi 224 (248)
+......++++. .+.+++|.|.+.+.++.+-+.|=.......+=|+...... .....|+++++...
T Consensus 24 ~~~~aCrL~~ka~~~G~rv~V~~~d~~~a~~LD~~LW~~~~~sFlPH~~~~~~~---------~~~~PV~L~~~~~~--- 91 (150)
T 3sxu_A 24 VEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEALWARPAESFVPHNLAGEGP---------RGGAPVEIAWPQKR--- 91 (150)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSSTTCCCCEEETTCSS---------TTCCSEEEECTTSC---
T ss_pred HHHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHhCCCCCcccCCccCCCCC---------CCCCCEEEeCCCCC---
Confidence 444444444432 2789999999999999999998554333333344211100 12346888875421
Q ss_pred CCCCCcEEEeccCC
Q 042003 225 DFKGVNCVINYDFP 238 (248)
Q Consensus 225 dip~~~~Vi~~~~p 238 (248)
.-+..+++||.+..
T Consensus 92 ~~~~~~vLinL~~~ 105 (150)
T 3sxu_A 92 SSSRRDILISLRTS 105 (150)
T ss_dssp CCSCCSEEEECCSS
T ss_pred CCCcCCEEEECCCC
Confidence 12346688888764
No 403
>3tx2_A Probable 6-phosphogluconolactonase; ssgcid, hydrolase; 1.50A {Mycobacterium abscessus}
Probab=20.88 E-value=44 Score=25.11 Aligned_cols=28 Identities=21% Similarity=0.222 Sum_probs=21.8
Q ss_pred ChHHHHHHHhc--CCcccCceeEEEEeccc
Q 042003 44 TPLRLRLAIRR--KKIDLSRVEYLVLDEAD 71 (248)
Q Consensus 44 Tp~~l~~~~~~--~~~~~~~~~~lIiDEah 71 (248)
||..+.+.+.. ..++++++.++-+||=-
T Consensus 50 tP~~~y~~L~~~~~~idw~~v~~f~~DEr~ 79 (251)
T 3tx2_A 50 TGIALLKHLRDVASGLDWTNVHVFWGDDRY 79 (251)
T ss_dssp HHHHHHHHHHHHHTTSCGGGEEEEESEEES
T ss_pred hHHHHHHHHHhhccCCCCceeEEEeeeecc
Confidence 45556666665 78899999999999974
No 404
>1vmd_A MGS, methylglyoxal synthase; TM1185, structural genomics, JCSG, P structure initiative, PSI, joint center for structural GENO lyase; 2.06A {Thermotoga maritima} SCOP: c.24.1.2
Probab=20.86 E-value=91 Score=22.11 Aligned_cols=48 Identities=17% Similarity=0.037 Sum_probs=32.9
Q ss_pred cchHHHHHHHHHhhcCCCeeEEEecCCCHHHHHHHHHHhhcCCceEEEEecc
Q 042003 168 QSKERAKELYGELAFDGIRAGVIHSDLSQTQRENAVDDFRAGKTWVLIATDV 219 (248)
Q Consensus 168 ~~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~ 219 (248)
.|..++..+.+. .|+.|..+... +..-+.++....++|+++.+|-|..
T Consensus 60 AT~gTa~~L~e~---~Gl~v~~v~k~-~eGG~pqI~d~I~~geIdlVInt~d 107 (178)
T 1vmd_A 60 ATGTTGALLQEK---LGLKVHRLKSG-PLGGDQQIGAMIAEGKIDVLIFFWD 107 (178)
T ss_dssp ECHHHHHHHHHH---HCCCCEECSCG-GGTHHHHHHHHHHTTSCCEEEEECC
T ss_pred EchHHHHHHHHH---hCceeEEEeec-CCCCCchHHHHHHCCCccEEEEccC
Confidence 455666555442 57777776543 1114678999999999999988875
No 405
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=20.83 E-value=48 Score=24.91 Aligned_cols=13 Identities=23% Similarity=0.404 Sum_probs=11.1
Q ss_pred eeEEEEecccccc
Q 042003 62 VEYLVLDEADKLF 74 (248)
Q Consensus 62 ~~~lIiDEah~~~ 74 (248)
..++++||+|.+.
T Consensus 111 ~~vl~iDEid~l~ 123 (285)
T 3h4m_A 111 PSIIFIDEIDAIA 123 (285)
T ss_dssp SEEEEEETTHHHH
T ss_pred CeEEEEECHHHhc
Confidence 3699999999985
No 406
>1nw9_B Caspase 9, apoptosis-related cysteine protease; XIAP, caspase inhibition, caspase activation, dimerization; 2.40A {Homo sapiens} SCOP: c.17.1.1 PDB: 1jxq_A* 2ar9_A
Probab=20.76 E-value=1.3e+02 Score=22.93 Aligned_cols=38 Identities=13% Similarity=0.080 Sum_probs=31.3
Q ss_pred hHHHHHHHHHhhcCCCeeEEEecCCCHHHHHHHHHHhhc
Q 042003 170 KERAKELYGELAFDGIRAGVIHSDLSQTQRENAVDDFRA 208 (248)
Q Consensus 170 ~~~~~~l~~~L~~~~~~v~~~~~~~~~~~r~~~~~~f~~ 208 (248)
..+++.+.+.|+..|+.|.. +..++.++-.+.++.|.+
T Consensus 45 ~~D~~~L~~~f~~LgF~V~~-~~dlt~~em~~~l~~~~~ 82 (277)
T 1nw9_B 45 NIDCEKLRRRFSSLHFMVEV-KGDLTAKKMVLALLELAR 82 (277)
T ss_dssp HHHHHHHHHHHHHTTEEEEE-EESCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCEEEE-EcCCCHHHHHHHHHHHHH
Confidence 35899999999999999855 667888888888888854
No 407
>1vl1_A 6PGL, 6-phosphogluconolactonase; TM1154, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO hydrolase; HET: CIT; 1.55A {Thermotoga maritima} SCOP: c.124.1.1 PDB: 1pbt_A
Probab=20.61 E-value=88 Score=23.11 Aligned_cols=29 Identities=24% Similarity=0.432 Sum_probs=23.4
Q ss_pred eChHHHHHHHhcCCcccCceeEEEEeccc
Q 042003 43 STPLRLRLAIRRKKIDLSRVEYLVLDEAD 71 (248)
Q Consensus 43 ~Tp~~l~~~~~~~~~~~~~~~~lIiDEah 71 (248)
.||..+.+.+....++++++.++-+||-=
T Consensus 55 sTp~~ly~~L~~~~i~w~~v~~f~~DEr~ 83 (232)
T 1vl1_A 55 RTPLPVYEKLAEQKFPWNRIHFFLSDERY 83 (232)
T ss_dssp TTHHHHHHHHTTSCCCGGGEEEEESEEES
T ss_pred ccHHHHHHHHHHcCCChhHEEEEeCeEee
Confidence 36777777777767888999999999964
No 408
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=20.57 E-value=1.8e+02 Score=18.60 Aligned_cols=53 Identities=15% Similarity=0.111 Sum_probs=36.3
Q ss_pred CCEEEEecchHHHHHHHHHhhcCCCeeEEEecCCCHHHHHHHHHHhhcCCceEEEEe
Q 042003 161 PPVLIFVQSKERAKELYGELAFDGIRAGVIHSDLSQTQRENAVDDFRAGKTWVLIAT 217 (248)
Q Consensus 161 ~~~liF~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T 217 (248)
.+++|.-+.....+.+...|+..++.+.+..... -.+.++.+.+...++++.-
T Consensus 6 ~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~----~~~a~~~l~~~~~dlii~D 58 (144)
T 3kht_A 6 KRVLVVEDNPDDIALIRRVLDRKDIHCQLEFVDN----GAKALYQVQQAKYDLIILD 58 (144)
T ss_dssp EEEEEECCCHHHHHHHHHHHHHTTCCEEEEEESS----HHHHHHHHTTCCCSEEEEC
T ss_pred CEEEEEeCCHHHHHHHHHHHHhcCCCeeEEEECC----HHHHHHHhhcCCCCEEEEe
Confidence 4677777778888899999999888743333321 2345666677778877764
No 409
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=20.28 E-value=2.3e+02 Score=19.84 Aligned_cols=83 Identities=8% Similarity=-0.005 Sum_probs=51.2
Q ss_pred eEEEEcCCchhHHHHHHHHHhccCCCCEEEEecchHHHHHHHHHh----------hcCCCeeEEEecCCCHHHHHHHHHH
Q 042003 136 QKLVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKERAKELYGEL----------AFDGIRAGVIHSDLSQTQRENAVDD 205 (248)
Q Consensus 136 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~liF~~~~~~~~~l~~~L----------~~~~~~v~~~~~~~~~~~r~~~~~~ 205 (248)
..++.++++......+..+++.. +-..+..+.+..++-.....- ....+.+.++.-.|+..+-.++++.
T Consensus 62 ~~ILiVdDd~~~~~~l~~~L~~~-g~~~v~~a~~~~eal~~l~~~~~~~~~~~~~~~~~~dlillD~~lp~~~G~el~~~ 140 (206)
T 3mm4_A 62 KRVLVVDDNFISRKVATGKLKKM-GVSEVEQCDSGKEALRLVTEGLTQREEQGSVDKLPFDYIFMDCQMPEMDGYEATRE 140 (206)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHT-TCSEEEEESSHHHHHHHHHHHHHHHHHHTCSSCCSCSEEEEESCCSSSCHHHHHHH
T ss_pred CEEEEEeCCHHHHHHHHHHHHHc-CCCeeeeeCCHHHHHHHHHhhcccccccccccCCCCCEEEEcCCCCCCCHHHHHHH
Confidence 35667788887888888888876 333566666666555443321 1235678888766665555555555
Q ss_pred hhc------CCceEEEEecc
Q 042003 206 FRA------GKTWVLIATDV 219 (248)
Q Consensus 206 f~~------g~~~ilv~T~~ 219 (248)
+++ ....|++.|..
T Consensus 141 lr~~~~~~~~~~piI~ls~~ 160 (206)
T 3mm4_A 141 IRKVEKSYGVRTPIIAVSGH 160 (206)
T ss_dssp HHHHHHTTTCCCCEEEEESS
T ss_pred HHhhhhhcCCCCcEEEEECC
Confidence 543 45667766653
No 410
>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=20.26 E-value=1.7e+02 Score=18.19 Aligned_cols=54 Identities=11% Similarity=0.029 Sum_probs=36.8
Q ss_pred CCCEEEEecc------hHHHHHHHHHhhcCCCeeEEEecCCCHHHHHHHHHHhhcCCceE
Q 042003 160 NPPVLIFVQS------KERAKELYGELAFDGIRAGVIHSDLSQTQRENAVDDFRAGKTWV 213 (248)
Q Consensus 160 ~~~~liF~~~------~~~~~~l~~~L~~~~~~v~~~~~~~~~~~r~~~~~~f~~g~~~i 213 (248)
..++++|... =-.|.++...|.+.++....+.=..+++.+.+..+.........
T Consensus 14 ~~~vvvy~~g~~~~~~Cp~C~~ak~~L~~~~i~~~~vdi~~~~~~~~~l~~~~g~~~vP~ 73 (109)
T 1wik_A 14 KASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKTFSNWPTYPQ 73 (109)
T ss_dssp TSSEEEEESSTTTCCCSSTHHHHHHHHHHTCSCEEEEESSSCHHHHHHHHHHHSCCSSCE
T ss_pred cCCEEEEEecCCCCCCCchHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHhCCCCCCE
Confidence 3578999772 23688889999998888877777666666666655544333333
No 411
>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A*
Probab=20.26 E-value=2.3e+02 Score=21.56 Aligned_cols=58 Identities=10% Similarity=0.137 Sum_probs=37.2
Q ss_pred CCCEEEEecchHHHHHHHHHhhcCCCee-EEEecCCCHHHHHHHHHHhhcCCceEEEEecc
Q 042003 160 NPPVLIFVQSKERAKELYGELAFDGIRA-GVIHSDLSQTQRENAVDDFRAGKTWVLIATDV 219 (248)
Q Consensus 160 ~~~~liF~~~~~~~~~l~~~L~~~~~~v-~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~ 219 (248)
..-++||++.....+.+.+.+ +.+.++ ..+..+++.++.+++.+.-++.... +++-+.
T Consensus 65 ~D~viI~tP~~~~~~~~~ea~-~~Gi~~iVi~t~G~~~~~~~~l~~~A~~~gv~-liGPNc 123 (288)
T 2nu8_A 65 ATASVIYVPAPFCKDSILEAI-DAGIKLIITITEGIPTLDMLTVKVKLDEAGVR-MIGPNT 123 (288)
T ss_dssp CCEEEECCCGGGHHHHHHHHH-HTTCSEEEECCCCCCHHHHHHHHHHHHHHTCE-EECSSC
T ss_pred CCEEEEecCHHHHHHHHHHHH-HCCCCEEEEECCCCCHHHHHHHHHHHHHcCCE-EEecCC
Confidence 456778888866655555555 456665 5567788887766777766655443 455554
No 412
>1dc7_A NTRC, nitrogen regulation protein; receiver domain, phosphorylation, signal transduction, conformational rearrangement; NMR {Salmonella typhimurium} SCOP: c.23.1.1 PDB: 1j56_A 1krw_A 1krx_A 1ntr_A 1dc8_A*
Probab=20.24 E-value=1.3e+02 Score=18.43 Aligned_cols=75 Identities=9% Similarity=0.020 Sum_probs=41.5
Q ss_pred EEcCCchhHHHHHHHHHhccCCCCEEEEecchHHHHHHHHHhhcCCCeeEEEecCCCHHHHHHHHHHhhc--CCceEEEE
Q 042003 139 VFAGSEEGKLLALRQSFAESLNPPVLIFVQSKERAKELYGELAFDGIRAGVIHSDLSQTQRENAVDDFRA--GKTWVLIA 216 (248)
Q Consensus 139 ~~~~~~~~~~~~l~~~~~~~~~~~~liF~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~r~~~~~~f~~--g~~~ilv~ 216 (248)
+.++++......+...+... +-. +..+++..++. +.+....+.+.++.-.++..+-.+.++.+++ ....+++.
T Consensus 7 livdd~~~~~~~l~~~l~~~-~~~-v~~~~~~~~~~---~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~ii~~ 81 (124)
T 1dc7_A 7 WVVDDDSSIRWVLERALAGA-GLT-CTTFENGNEVL---AALASKTPDVLLSDIRMPGMDGLALLKQIKQRHPMLPVIIM 81 (124)
T ss_dssp EEECSSSSHHHHHHHHHTTT-TCC-CEECCCTTHHH---HHSSSCCCSCEEECSCSSHHHHCSTHHHHHHHCTTSCCCCB
T ss_pred EEEeCCHHHHHHHHHHHHhC-CcE-EEEeCCHHHHH---HHHhcCCCCEEEEeeecCCCCHHHHHHHHHhhCCCCCEEEE
Confidence 34555666667777777654 333 33455544433 3455556778888777776554444444432 23455555
Q ss_pred ec
Q 042003 217 TD 218 (248)
Q Consensus 217 T~ 218 (248)
|.
T Consensus 82 s~ 83 (124)
T 1dc7_A 82 TA 83 (124)
T ss_dssp CC
T ss_pred ec
Confidence 54
No 413
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=20.03 E-value=1.1e+02 Score=20.57 Aligned_cols=42 Identities=12% Similarity=0.000 Sum_probs=27.8
Q ss_pred HHhhcCCCeeEEEecCCCHHHH----HHHHHHhhcCCceEEEEeccc
Q 042003 178 GELAFDGIRAGVIHSDLSQTQR----ENAVDDFRAGKTWVLIATDVI 220 (248)
Q Consensus 178 ~~L~~~~~~v~~~~~~~~~~~r----~~~~~~f~~g~~~ilv~T~~~ 220 (248)
+.|++.|+++..+..... ..+ .++.+.+++|+++.+|-|..-
T Consensus 61 ~~L~~~Gi~v~~v~k~~e-gg~~~~~~~i~d~i~~g~i~lVInt~~~ 106 (143)
T 2yvq_A 61 DWLNANNVPATPVAWPSQ-EGQNPSLSSIRKLIRDGSIDLVINLPNN 106 (143)
T ss_dssp HHHHHTTCCCEEECCGGG-C-----CBCHHHHHHTTSCCEEEECCCC
T ss_pred HHHHHcCCeEEEEEeccC-CCcccccccHHHHHHCCCceEEEECCCC
Confidence 345567777777764211 103 468899999999999988743
No 414
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=20.01 E-value=44 Score=24.62 Aligned_cols=26 Identities=12% Similarity=0.282 Sum_probs=17.7
Q ss_pred CceeEEEEeccccccccCcccccchhHh
Q 042003 60 SRVEYLVLDEADKLFEVGNLLKHIDPVV 87 (248)
Q Consensus 60 ~~~~~lIiDEah~~~~~~~~~~~~~~~~ 87 (248)
.+.++|+|||||-+... ....+..+.
T Consensus 100 ~~~dvV~IDEaQFf~~~--~v~~l~~la 125 (219)
T 3e2i_A 100 TNVDVIGIDEVQFFDDE--IVSIVEKLS 125 (219)
T ss_dssp TTCSEEEECCGGGSCTH--HHHHHHHHH
T ss_pred cCCCEEEEechhcCCHH--HHHHHHHHH
Confidence 56789999999986542 444555554
Done!