BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042005
(432 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1BCR|A Chain A, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor, Antipain,
And Arginine At Room Temperature
pdb|1BCS|A Chain A, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor,
Chymostatin, And Arginine At 100 Degrees Kelvin
Length = 263
Score = 214 bits (546), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 115/259 (44%), Positives = 141/259 (54%), Gaps = 27/259 (10%)
Query: 73 DKIESLPGQPLGVNFDQYSGYVNVDSQDGRSLFYYFVESPQNSSSKPLVLWLNGGPGFSS 132
D+I LPGQP V+FD YSGY+ VD GRSLFY E+P+++ PLVLWLNGGPG SS
Sbjct: 9 DRIARLPGQP-AVDFDMYSGYITVDEGAGRSLFYLLQEAPEDAQPAPLVLWLNGGPGCSS 67
Query: 133 FGAGTMMELGPFRVNKDGKTLYQNEYAWNK----------------------DYKVNGDI 170
G ELG FRV G L NEY WNK D +GD
Sbjct: 68 VAYGASEELGAFRVKPRGAGLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTSGDN 127
Query: 171 RTARDSYTFLVSWLARFPEYKTRDFFIAGESYAGHYIPQLAQAILYNNQHANQTIINLRG 230
RTA DSY FL W RFP YK RDF+IAGESYAGHY+P+L+Q + + +INL+G
Sbjct: 128 RTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLV----HRSKNPVINLKG 183
Query: 231 IAMGNALIDLETMMKGTVDFYWTHALMPDEIYHGLTSSYNFASLNSSDKVCLEFIDQGDA 290
+GN LID GT +F+W H ++ D+ Y L + S C D A
Sbjct: 184 FMVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEACLHDSFIHPSPACDAATDVATA 243
Query: 291 AAGNIYSYDIYAPLCNSSS 309
GNI Y +Y P+CN +S
Sbjct: 244 EQGNIDMYSLYTPVCNITS 262
>pdb|1WHS|A Chain A, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 255
Score = 213 bits (543), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 114/256 (44%), Positives = 139/256 (54%), Gaps = 27/256 (10%)
Query: 73 DKIESLPGQPLGVNFDQYSGYVNVDSQDGRSLFYYFVESPQNSSSKPLVLWLNGGPGFSS 132
D+I LPGQP V+FD YSGY+ VD GRSLFY E+P+++ PLVLWLNGGPG SS
Sbjct: 4 DRIARLPGQP-AVDFDMYSGYITVDEGAGRSLFYLLQEAPEDAQPAPLVLWLNGGPGCSS 62
Query: 133 FGAGTMMELGPFRVNKDGKTLYQNEYAWNK----------------------DYKVNGDI 170
G ELG FRV G L NEY WNK D +GD
Sbjct: 63 VAYGASEELGAFRVKPRGAGLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTSGDN 122
Query: 171 RTARDSYTFLVSWLARFPEYKTRDFFIAGESYAGHYIPQLAQAILYNNQHANQTIINLRG 230
RTA DSY FL W RFP YK RDF+IAGESYAGHY+P+L+Q + + +INL+G
Sbjct: 123 RTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLV----HRSKNPVINLKG 178
Query: 231 IAMGNALIDLETMMKGTVDFYWTHALMPDEIYHGLTSSYNFASLNSSDKVCLEFIDQGDA 290
+GN LID GT +F+W H ++ D+ Y L + S C D A
Sbjct: 179 FMVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEACLHDSFIHPSPACDAATDVATA 238
Query: 291 AAGNIYSYDIYAPLCN 306
GNI Y +Y P+CN
Sbjct: 239 EQGNIDMYSLYTPVCN 254
>pdb|1WHT|A Chain A, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 256
Score = 213 bits (543), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 114/256 (44%), Positives = 139/256 (54%), Gaps = 27/256 (10%)
Query: 73 DKIESLPGQPLGVNFDQYSGYVNVDSQDGRSLFYYFVESPQNSSSKPLVLWLNGGPGFSS 132
D+I LPGQP V+FD YSGY+ VD GRSLFY E+P+++ PLVLWLNGGPG SS
Sbjct: 5 DRIARLPGQP-AVDFDMYSGYITVDEGAGRSLFYLLQEAPEDAQPAPLVLWLNGGPGCSS 63
Query: 133 FGAGTMMELGPFRVNKDGKTLYQNEYAWNK----------------------DYKVNGDI 170
G ELG FRV G L NEY WNK D +GD
Sbjct: 64 VAYGASEELGAFRVKPRGAGLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTSGDN 123
Query: 171 RTARDSYTFLVSWLARFPEYKTRDFFIAGESYAGHYIPQLAQAILYNNQHANQTIINLRG 230
RTA DSY FL W RFP YK RDF+IAGESYAGHY+P+L+Q + + +INL+G
Sbjct: 124 RTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLV----HRSKNPVINLKG 179
Query: 231 IAMGNALIDLETMMKGTVDFYWTHALMPDEIYHGLTSSYNFASLNSSDKVCLEFIDQGDA 290
+GN LID GT +F+W H ++ D+ Y L + S C D A
Sbjct: 180 FMVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEACLHDSFIHPSPACDAATDVATA 239
Query: 291 AAGNIYSYDIYAPLCN 306
GNI Y +Y P+CN
Sbjct: 240 EQGNIDMYSLYTPVCN 255
>pdb|3SC2|A Chain A, Refined Atomic Model Of Wheat Serine Carboxypeptidase Ii
At 2.2- Angstroms Resolution
Length = 259
Score = 213 bits (542), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 114/256 (44%), Positives = 139/256 (54%), Gaps = 27/256 (10%)
Query: 73 DKIESLPGQPLGVNFDQYSGYVNVDSQDGRSLFYYFVESPQNSSSKPLVLWLNGGPGFSS 132
D+I LPGQP V+FD YSGY+ VD GRSLFY E+P+++ PLVLWLNGGPG SS
Sbjct: 9 DRIARLPGQP-AVDFDMYSGYITVDEGAGRSLFYLLQEAPEDAQPAPLVLWLNGGPGCSS 67
Query: 133 FGAGTMMELGPFRVNKDGKTLYQNEYAWNK----------------------DYKVNGDI 170
G ELG FRV G L NEY WNK D +GD
Sbjct: 68 VAYGASEELGAFRVKPAGAGLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTSGDN 127
Query: 171 RTARDSYTFLVSWLARFPEYKTRDFFIAGESYAGHYIPQLAQAILYNNQHANQTIINLRG 230
RTA DSY FL W RFP YK RDF+IAGESYAGHY+P+L+Q + + +INL+G
Sbjct: 128 RTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLV----HRSKNPVINLKG 183
Query: 231 IAMGNALIDLETMMKGTVDFYWTHALMPDEIYHGLTSSYNFASLNSSDKVCLEFIDQGDA 290
+GN LID GT +F+W H ++ D+ Y L + S C D A
Sbjct: 184 FMVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEACLHDSFIHPSPACDAATDVATA 243
Query: 291 AAGNIYSYDIYAPLCN 306
GNI Y +Y P+CN
Sbjct: 244 EQGNIDMYSLYTPVCN 259
>pdb|1GXS|A Chain A, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
pdb|1GXS|C Chain C, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
Length = 270
Score = 184 bits (468), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 105/259 (40%), Positives = 142/259 (54%), Gaps = 26/259 (10%)
Query: 70 KDKDKIESLPGQPLGVNFDQYSGYVNVDSQDGRSLFYYFVESPQNSSSKP-LVLWLNGGP 128
++ D+I LPGQP GV F Y GYV +D +GR+L+Y+F E+ + LVLWLNGGP
Sbjct: 5 QEDDRILGLPGQPNGVAFGMYGGYVTIDDNNGRALYYWFQEADTADPAAAPLVLWLNGGP 64
Query: 129 GFSSFGAGTMMELGPFRVNKDGKTLYQNEYAWNKDYKV---------------------N 167
G SS G G M ELG FRV+ +G++L NEYAWNK +
Sbjct: 65 GCSSIGLGAMQELGAFRVHTNGESLLLNEYAWNKAANILFAESPAGVGFSYSNTSSDLSM 124
Query: 168 GDIRTARDSYTFLVSWLARFPEYKTRDFFIAGESYAGHYIPQLAQAILYNNQHANQTIIN 227
GD + A+D+YTFLV W RFP Y R+F+IAGES GH+IPQL+Q ++Y N++ N IN
Sbjct: 125 GDDKMAQDTYTFLVKWFERFPHYNYREFYIAGES--GHFIPQLSQ-VVYRNRN-NSPFIN 180
Query: 228 LRGIAMGNALIDLETMMKGTVDFYWTHALMPDEIYHGLTSSYNFASLNSSDKVCLEFIDQ 287
+G+ + + L + M G + +W H L+ DE S C E ++
Sbjct: 181 FQGLLVSSGLTNDHEDMIGMFESWWHHGLISDETRDSGLKVCPGTSFMHPTPECTEVWNK 240
Query: 288 GDAAAGNIYSYDIYAPLCN 306
A GNI Y IY P C+
Sbjct: 241 ALAEQGNINPYTIYTPTCD 259
>pdb|1BCR|B Chain B, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor, Antipain,
And Arginine At Room Temperature
pdb|1BCS|B Chain B, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor,
Chymostatin, And Arginine At 100 Degrees Kelvin
Length = 160
Score = 135 bits (341), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 61/113 (53%), Positives = 82/113 (72%)
Query: 318 SGEINRNWKDKPQTVLPIIQELMAEGIRIWVYSGDTDGALPVTCTRYAVKKLGTPVRTAW 377
S IN +W D P+++LPI +EL+A G+RIWV+SGDTD +P+T TRY++ LG P T+W
Sbjct: 41 SDTINTHWHDAPRSMLPIYRELIAAGLRIWVFSGDTDAVVPLTATRYSIGALGLPTTTSW 100
Query: 378 YPWYTQGEVGGYAVGYQNLTFVTVRGAGHFVPSYQPARALVLFSSFINGTLPP 430
YPWY EVGG++ Y+ LT V+VRGAGH VP ++P +ALVLF F+ G P
Sbjct: 101 YPWYDDQEVGGWSQVYKGLTLVSVRGAGHEVPLHRPRQALVLFQYFLQGKPMP 153
>pdb|1WHT|B Chain B, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 153
Score = 135 bits (341), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 61/113 (53%), Positives = 82/113 (72%)
Query: 318 SGEINRNWKDKPQTVLPIIQELMAEGIRIWVYSGDTDGALPVTCTRYAVKKLGTPVRTAW 377
S IN +W D P+++LPI +EL+A G+RIWV+SGDTD +P+T TRY++ LG P T+W
Sbjct: 39 SDTINTHWHDAPRSMLPIYRELIAAGLRIWVFSGDTDAVVPLTATRYSIGALGLPTTTSW 98
Query: 378 YPWYTQGEVGGYAVGYQNLTFVTVRGAGHFVPSYQPARALVLFSSFINGTLPP 430
YPWY EVGG++ Y+ LT V+VRGAGH VP ++P +ALVLF F+ G P
Sbjct: 99 YPWYDDQEVGGWSQVYKGLTLVSVRGAGHEVPLHRPRQALVLFQYFLQGKPMP 151
>pdb|3SC2|B Chain B, Refined Atomic Model Of Wheat Serine Carboxypeptidase Ii
At 2.2- Angstroms Resolution
Length = 152
Score = 135 bits (340), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 61/113 (53%), Positives = 82/113 (72%)
Query: 318 SGEINRNWKDKPQTVLPIIQELMAEGIRIWVYSGDTDGALPVTCTRYAVKKLGTPVRTAW 377
S IN +W D P+++LPI +EL+A G+RIWV+SGDTD +P+T TRY++ LG P T+W
Sbjct: 39 SDTINTHWHDAPRSMLPIYRELIAAGLRIWVFSGDTDAVVPLTATRYSIGALGLPTTTSW 98
Query: 378 YPWYTQGEVGGYAVGYQNLTFVTVRGAGHFVPSYQPARALVLFSSFINGTLPP 430
YPWY EVGG++ Y+ LT V+VRGAGH VP ++P +ALVLF F+ G P
Sbjct: 99 YPWYDDQEVGGWSQVYKGLTLVSVRGAGHEVPLHRPRQALVLFQYFLQGKPMP 151
>pdb|1WHS|B Chain B, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 153
Score = 135 bits (340), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 61/113 (53%), Positives = 82/113 (72%)
Query: 318 SGEINRNWKDKPQTVLPIIQELMAEGIRIWVYSGDTDGALPVTCTRYAVKKLGTPVRTAW 377
S IN +W D P+++LPI +EL+A G+RIWV+SGDTD +P+T TRY++ LG P T+W
Sbjct: 39 SDTINTHWHDAPRSMLPIYRELIAAGLRIWVFSGDTDAVVPLTATRYSIGALGLPTTTSW 98
Query: 378 YPWYTQGEVGGYAVGYQNLTFVTVRGAGHFVPSYQPARALVLFSSFINGTLPP 430
YPWY EVGG++ Y+ LT V+VRGAGH VP ++P +ALVLF F+ G P
Sbjct: 99 YPWYDDQEVGGWSQVYKGLTLVSVRGAGHEVPLHRPRQALVLFQYFLQGKPMP 151
>pdb|1IVY|A Chain A, Physiological Dimer Hpp Precursor
pdb|1IVY|B Chain B, Physiological Dimer Hpp Precursor
Length = 452
Score = 130 bits (326), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 91/260 (35%), Positives = 131/260 (50%), Gaps = 37/260 (14%)
Query: 71 DKDKIESLPGQPLGVNFDQYSGYVNVDSQDGRSLFYYFVESPQNSSSKPLVLWLNGGPGF 130
D+D+I+ LPG +F QYSGY+ S + L Y+FVES ++ + P+VLWLNGGPG
Sbjct: 3 DQDEIQRLPGLAKQPSFRQYSGYLK--SSGSKHLHYWFVESQKDPENSPVVLWLNGGPGC 60
Query: 131 SSFGAGTMMELGPFRVNKDGKTLYQNEYAWN---------------------KDYKVNGD 169
SS G + E GPF V DG TL N Y+WN K Y N D
Sbjct: 61 SSLD-GLLTEHGPFLVQPDGVTLEYNPYSWNLIANVLYLESPAGVGFSYSDDKFYATN-D 118
Query: 170 IRTARDSYTFLVSWLARFPEYKTRDFFIAGESYAGHYIPQLAQAILYNNQHANQTIINLR 229
A+ ++ L + FPEYK F+ GESYAG YIP LA ++ + +NL+
Sbjct: 119 TEVAQSNFEALQDFFRLFPEYKNNKLFLTGESYAGIYIPTLAVLVMQDPS------MNLQ 172
Query: 230 GIAMGNALIDLETMMKGTVDFYWTHALMPDEIYHGLTS---SYNFASL-NSSDKVCLEFI 285
G+A+GN L E V F + H L+ + ++ L + S N + ++ D C+ +
Sbjct: 173 GLAVGNGLSSYEQNDNSLVYFAYYHGLLGNRLWSSLQTHCCSQNKCNFYDNKDLECVTNL 232
Query: 286 DQGDAAAGN--IYSYDIYAP 303
+ GN + Y++YAP
Sbjct: 233 QEVARIVGNSGLNIYNLYAP 252
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 49/95 (51%), Gaps = 5/95 (5%)
Query: 336 IQELMAEGIRIWVYSGDTDGALPVTCTRYAVKKLGTPVRTAWYPWYTQ-----GEVGGYA 390
++ L ++ +I +Y+GD D A + V L + PW + ++ G+
Sbjct: 354 LKLLSSQKYQILLYNGDVDMACNFMGDEWFVDSLNQKMEVQRRPWLVKYGDSGEQIAGFV 413
Query: 391 VGYQNLTFVTVRGAGHFVPSYQPARALVLFSSFIN 425
+ ++ F+T++GAGH VP+ +P A +FS F+N
Sbjct: 414 KEFSHIAFLTIKGAGHMVPTDKPLAAFTMFSRFLN 448
>pdb|4AZ0|A Chain A, Crystal Structure Of Cathepsin A, Complexed With 8a.
pdb|4AZ3|A Chain A, Crystal Structure Of Cathepsin A, Complexed With 15a
Length = 300
Score = 128 bits (322), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 90/260 (34%), Positives = 130/260 (50%), Gaps = 37/260 (14%)
Query: 71 DKDKIESLPGQPLGVNFDQYSGYVNVDSQDGRSLFYYFVESPQNSSSKPLVLWLNGGPGF 130
D+D+I+ LPG +F QYSGY+ + L Y+FVES ++ + P+VLWLNGGPG
Sbjct: 5 DQDEIQRLPGLAKQPSFRQYSGYLK--GSGSKHLHYWFVESQKDPENSPVVLWLNGGPGC 62
Query: 131 SSFGAGTMMELGPFRVNKDGKTLYQNEYAWN---------------------KDYKVNGD 169
SS G + E GPF V DG TL N Y+WN K Y N D
Sbjct: 63 SSLD-GLLTEHGPFLVQPDGVTLEYNPYSWNLIANVLYLESPAGVGFSYSDDKFYATN-D 120
Query: 170 IRTARDSYTFLVSWLARFPEYKTRDFFIAGESYAGHYIPQLAQAILYNNQHANQTIINLR 229
A+ ++ L + FPEYK F+ GESYAG YIP LA ++ + +NL+
Sbjct: 121 TEVAQSNFEALQDFFRLFPEYKNNKLFLTGESYAGIYIPTLAVLVMQDPS------MNLQ 174
Query: 230 GIAMGNALIDLETMMKGTVDFYWTHALMPDEIYHGLTS---SYNFASL-NSSDKVCLEFI 285
G+A+GN L E V F + H L+ + ++ L + S N + ++ D C+ +
Sbjct: 175 GLAVGNGLSSYEQNDNSLVYFAYYHGLLGNRLWSSLQTHCCSQNKCNFYDNKDLECVTNL 234
Query: 286 DQGDAAAGN--IYSYDIYAP 303
+ GN + Y++YAP
Sbjct: 235 QEVARIVGNSGLNIYNLYAP 254
>pdb|1GXS|B Chain B, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
pdb|1GXS|D Chain D, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
Length = 158
Score = 123 bits (309), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 59/118 (50%), Positives = 81/118 (68%), Gaps = 4/118 (3%)
Query: 318 SGEINRNWKDKPQTVLPIIQELMAEGIRIWVYSGDTDGALPVTCTRYAVKKLGTPVRTAW 377
S I W +LP+ +EL+ G+R+WVYSGDTD +PV+ TR ++ L PV+T+W
Sbjct: 41 SNTIFDQWGQAADDLLPVYRELIQAGLRVWVYSGDTDSVVPVSSTRRSLAALELPVKTSW 100
Query: 378 YPWY---TQGEVGGYAVGYQNLTFVTVRGAGHFVPSYQPARALVLFSSFINGTLPPPA 432
YPWY T+ EVGG++V Y+ LT+VTVRGAGH VP ++PA+A +LF F+ G P PA
Sbjct: 101 YPWYMAPTEREVGGWSVQYEGLTYVTVRGAGHLVPVHRPAQAFLLFKQFLKGE-PMPA 157
>pdb|1WPX|A Chain A, Crystal Structure Of Carboxypeptidase Y Inhibitor
Complexed With The Cognate Proteinase
pdb|1YSC|A Chain A, 2.8 Angstroms Structure Of Yeast Serine Carboxypeptidase
Length = 421
Score = 107 bits (267), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 112/432 (25%), Positives = 171/432 (39%), Gaps = 110/432 (25%)
Query: 83 LGV--NFDQYSGYVNVDSQDGRSLFYYFVESPQNSSSKPLVLWLNGGPGFSSFGAGTMME 140
LG+ N QY+GY++V+ +D + F++ ES + + P++LWLNGGPG SS G E
Sbjct: 8 LGIDPNVTQYTGYLDVEDED-KHFFFWTFESRNDPAKDPVILWLNGGPGCSSL-TGLFFE 65
Query: 141 LGPFRVNKDGKTLYQNEYAWNKDYKV-------------------NGDIRTARDSYTFLV 181
LGP + D K + N Y+WN + V + + +D Y FL
Sbjct: 66 LGPSSIGPDLKPI-GNPYSWNSNATVIFLDQPVNVGFSYSGSSGVSNTVAAGKDVYNFLE 124
Query: 182 SWLARFPEY--KTRDFFIAGESYAGHYIPQLAQAIL-YNNQHANQTIINL---------- 228
+ +FPEY K +DF IAGESYAGHYIP A IL + +++ N T + +
Sbjct: 125 LFFDQFPEYVNKGQDFHIAGESYAGHYIPVFASEILSHKDRNFNLTSVLIGNGLTDPLTQ 184
Query: 229 ---------------------RGIAMGNALIDLETMMKGTVDFYWTHALMPDEIYHGLTS 267
AM ++L +++ D + +P IY
Sbjct: 185 YNYYEPMACGEGGEPSVLPSEECSAMEDSLERCLGLIESCYDSQSVWSCVPATIY----- 239
Query: 268 SYNFASLNSSDKVCLEFID-QGDAAAGNIYSYDIYAPLCNSSSKFNTEIANSG------- 319
N A L + D + D GN+ Y L + N +
Sbjct: 240 -CNNAQLAPYQRTGRNVYDIRKDCEGGNL----CYPTLQDIDDYLNQDYVKEAVGAEVDH 294
Query: 320 ------EINRNWKDKPQTVLP---IIQELMAEGIRIWVYSGDTDGALPVTCTRYAVKKLG 370
+INRN+ + P + +L+ + + I VY+GD D + LG
Sbjct: 295 YESCNFDINRNFLFAGDWMKPYHTAVTDLLNQDLPILVYAGDKD---------FICNWLG 345
Query: 371 TPVRTAWYPWY----------------TQGEVGGYAVGYQNLTFVTVRGAGHFVPSYQPA 414
T PW EV G Y++ T++ V GH VP P
Sbjct: 346 NKAWTDVLPWKYDEEFASQKVRNWTASITDEVAGEVKSYKHFTYLRVFNGGHMVPFDVPE 405
Query: 415 RALVLFSSFING 426
AL + + +I+G
Sbjct: 406 NALSMVNEWIHG 417
>pdb|1AC5|A Chain A, Crystal Structure Of Kex1(delta)p, A Prohormone-processing
Carboxypeptidase From Saccharomyces Cerevisiae
Length = 483
Score = 105 bits (263), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 115/428 (26%), Positives = 174/428 (40%), Gaps = 129/428 (30%)
Query: 95 NVDSQDGRSLFYYFVESPQNSSS----KPLVLWLNGGPGFSSFGAGTMMELGPFRVNKDG 150
+ D QD L Y+F + N S+ +PL++WLNGGPG SS G ++E GPFRVN DG
Sbjct: 40 DADEQDSSDLEYFFWKFTNNDSNGNVDRPLIIWLNGGPGCSSMD-GALVESGPFRVNSDG 98
Query: 151 KTLYQNEYAW---------------------NKDY------KVNGDIRTARDSYT-FLVS 182
K LY NE +W NKD K + D+ + FL +
Sbjct: 99 K-LYLNEGSWISKGDLLFIDQPTGTGFSVEQNKDEGKIDKNKFDEDLEDVTKHFMDFLEN 157
Query: 183 WLARFPEYKTRDFFIAGESYAGHYIPQLAQAILYNNQHA--NQTIINLRGIAMGNALIDL 240
+ FPE TR ++GESYAG YIP A AIL +N+ + + +L+ + +GN ID
Sbjct: 158 YFKIFPEDLTRKIILSGESYAGQYIPFFANAILNHNKFSKIDGDTYDLKALLIGNGWIDP 217
Query: 241 ETMMKGTVDFYWTHALMPDEIYHGLTSSYNFASLNSSDKVCLEFID-------------- 286
T + F L+ + S+ NF L ++ + C I+
Sbjct: 218 NTQSLSYLPFAMEKKLIDE-------SNPNFKHLTNAHENCQNLINSASTDEAAHFSYQE 270
Query: 287 -----------------QGDAAAGNIYSYDIYA--PLCNSS--------SKF-------N 312
+G A N+Y++++ P C + SKF +
Sbjct: 271 CENILNLLLSYTRESSQKGTADCLNMYNFNLKDSYPSCGMNWPKDISFVSKFFSTPGVID 330
Query: 313 TEIANSGEINRNWKDKPQTV------------LPIIQELMAEGIRIWVYSGDTDGALPVT 360
+ +S +I+ WK+ +V + ++ L+ GI I +++GD D +
Sbjct: 331 SLHLDSDKIDH-WKECTNSVGTKLSNPISKPSIHLLPGLLESGIEIVLFNGDKD----LI 385
Query: 361 CTRYAVKKLGTPVRTAW------------YPWYTQG-------EVGGYAVGYQNLTFVTV 401
C V L T W + W + E GY +NLTFV+V
Sbjct: 386 CNNKGV--LDTIDNLKWGGIKGFSDDAVSFDWIHKSKSTDDSEEFSGYVKYDRNLTFVSV 443
Query: 402 RGAGHFVP 409
A H VP
Sbjct: 444 YNASHMVP 451
>pdb|1CPY|A Chain A, Site-Directed Mutagenesis On (Serine) Carboxypeptidase Y
From Yeast. The Significance Of Thr 60 And Met 398 In
Hydrolysis And Aminolysis Reactions
Length = 421
Score = 102 bits (255), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 110/432 (25%), Positives = 169/432 (39%), Gaps = 110/432 (25%)
Query: 83 LGV--NFDQYSGYVNVDSQDGRSLFYYFVESPQNSSSKPLVLWLNGGPGFSSFGAGTMME 140
LG+ N QY+GY++V+ +D + F++ ES + + P++LWLNGGPG SS G
Sbjct: 8 LGIDPNVTQYTGYLDVEDED-KHFFFWTFESRNDPAKDPVILWLNGGPGCSSL-TGLFFA 65
Query: 141 LGPFRVNKDGKTLYQNEYAWNKDYKV-------------------NGDIRTARDSYTFLV 181
LGP + D K + N Y+WN + V + + +D Y FL
Sbjct: 66 LGPSSIGPDLKPI-GNPYSWNSNATVIFLDQPVNVGFSYSGSSGVSNTVAAGKDVYNFLE 124
Query: 182 SWLARFPEY--KTRDFFIAGESYAGHYIPQLAQAIL-YNNQHANQTIINL---------- 228
+ +FPEY K +DF IAG SYAGHYIP A IL + +++ N T + +
Sbjct: 125 LFFDQFPEYVNKGQDFHIAGASYAGHYIPVFASEILSHKDRNFNLTSVLIGNGLTDPLTQ 184
Query: 229 ---------------------RGIAMGNALIDLETMMKGTVDFYWTHALMPDEIYHGLTS 267
AM ++L +++ D + +P IY
Sbjct: 185 YNYYEPMACGEGGEPSVLPSEECSAMEDSLERCLGLIESCYDSQSVWSCVPATIY----- 239
Query: 268 SYNFASLNSSDKVCLEFID-QGDAAAGNIYSYDIYAPLCNSSSKFNTEIANSG------- 319
N A L + D + D GN+ Y L + N +
Sbjct: 240 -CNNAQLAPYQRTGRNVYDIRKDCEGGNL----CYPTLQDIDDYLNQDYVKEAVGAEVDH 294
Query: 320 ------EINRNWKDKPQTVLP---IIQELMAEGIRIWVYSGDTDGALPVTCTRYAVKKLG 370
+INRN+ + P + +L+ + + I VY+GD D + LG
Sbjct: 295 YESCNFDINRNFLFAGDWMKPYHTAVTDLLNQDLPILVYAGDKD---------FICNWLG 345
Query: 371 TPVRTAWYPWY----------------TQGEVGGYAVGYQNLTFVTVRGAGHFVPSYQPA 414
T PW EV G Y++ T++ V GH VP P
Sbjct: 346 NKAWTDVLPWKYDEEFASQKVRNWTASITDEVAGEVKSYKHFTYLRVFNGGHMVPFDVPE 405
Query: 415 RALVLFSSFING 426
AL + + +I+G
Sbjct: 406 NALSMVNEWIHG 417
>pdb|4AZ0|B Chain B, Crystal Structure Of Cathepsin A, Complexed With 8a.
pdb|4AZ3|B Chain B, Crystal Structure Of Cathepsin A, Complexed With 15a
Length = 155
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 49/95 (51%), Gaps = 5/95 (5%)
Query: 336 IQELMAEGIRIWVYSGDTDGALPVTCTRYAVKKLGTPVRTAWYPWYTQ-----GEVGGYA 390
++ L ++ +I +Y+GD D A + V L + PW + ++ G+
Sbjct: 56 LKLLSSQKYQILLYNGDVDMACNFMGDEWFVDSLNQKMEVQRRPWLVKYGDSGEQIAGFV 115
Query: 391 VGYQNLTFVTVRGAGHFVPSYQPARALVLFSSFIN 425
+ ++ F+T++GAGH VP+ +P A +FS F+N
Sbjct: 116 KEFSHIAFLTIKGAGHMVPTDKPLAAFTMFSRFLN 150
>pdb|2BNU|A Chain A, Structural And Kinetic Basis For Heightened Immunogenicity
Of T Cell Vaccines
Length = 203
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Query: 88 DQYSGYVN--VDSQDGRSLFYYFVESPQNSSS-KPLVLWLNGGPGFSSFGAGTMMELGPF 144
+Q SG +N +D GRS Y P +S++ V +GG +FG GT + + P+
Sbjct: 55 EQTSGRLNASLDKSSGRSTLYIAASQPGDSATYLCAVRPTSGGSYIPTFGRGTSLIVHPY 114
Query: 145 RVNKDGKTLYQNEYAWNKDYKV 166
N D +YQ + + D V
Sbjct: 115 IQNPD-PAVYQLRRSKSSDKSV 135
>pdb|2BNQ|D Chain D, Structural And Kinetic Basis For Heightened Immunogenicity
Of T Cell Vaccines
pdb|2BNR|D Chain D, Structural And Kinetic Basis For Heightened Immunogenicity
Of T Cell Vaccines
Length = 203
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Query: 88 DQYSGYVN--VDSQDGRSLFYYFVESPQNSSS-KPLVLWLNGGPGFSSFGAGTMMELGPF 144
+Q SG +N +D GRS Y P +S++ V +GG +FG GT + + P+
Sbjct: 55 EQTSGRLNASLDKSSGRSTLYIAASQPGDSATYLCAVRPTSGGSYIPTFGRGTSLIVHPY 114
Query: 145 RVNKDGKTLYQNEYAWNKDYKV 166
N D +YQ + + D V
Sbjct: 115 IQNPD-PAVYQLRDSKSSDKSV 135
>pdb|2F53|D Chain D, Directed Evolution Of Human T-Cell Receptor Cdr2 Residues
By Phage Display Dramatically Enhances Affinity For
Cognate Peptide-Mhc Without Apparent Cross-Reactivity
Length = 193
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Query: 88 DQYSGYVN--VDSQDGRSLFYYFVESPQNSSS-KPLVLWLNGGPGFSSFGAGTMMELGPF 144
+Q SG +N +D GRS Y P +S++ V +GG +FG GT + + P+
Sbjct: 57 EQTSGRLNASLDKSSGRSTLYIAASQPGDSATYLCAVRPTSGGSYIPTFGRGTSLIVHPY 116
Query: 145 RVNKDGKTLYQNEYAWNKDYKV 166
N D +YQ + + D V
Sbjct: 117 IQNPD-PAVYQLRDSKSSDKSV 137
>pdb|3BRJ|A Chain A, Crystal Structure Of Mannitol Operon Repressor (Mtlr) From
Vibrio Parahaemolyticus Rimd 2210633
pdb|3BRJ|B Chain B, Crystal Structure Of Mannitol Operon Repressor (Mtlr) From
Vibrio Parahaemolyticus Rimd 2210633
pdb|3BRJ|C Chain C, Crystal Structure Of Mannitol Operon Repressor (Mtlr) From
Vibrio Parahaemolyticus Rimd 2210633
pdb|3BRJ|D Chain D, Crystal Structure Of Mannitol Operon Repressor (Mtlr) From
Vibrio Parahaemolyticus Rimd 2210633
Length = 175
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 41/97 (42%), Gaps = 9/97 (9%)
Query: 192 TRDFFIAGESYAGHYIPQLAQAILYNNQHANQTIINLRGIAMGNA--LIDLETMMKGTVD 249
R FFIA I L Q I + A Q+++ G + ++ L DL +K
Sbjct: 23 VRGFFIATVDVFNESIDGLIQRIFRKDNFAVQSVV---GPLLQDSGPLGDLSVRLK---- 75
Query: 250 FYWTHALMPDEIYHGLTSSYNFASLNSSDKVCLEFID 286
+ ++PD+IYH + + +SD EF D
Sbjct: 76 LLFGLGVLPDDIYHDIEDIIKLKNHLNSDASDYEFTD 112
>pdb|3DOH|A Chain A, Crystal Structure Of A Thermostable Esterase
pdb|3DOH|B Chain B, Crystal Structure Of A Thermostable Esterase
pdb|3DOI|A Chain A, Crystal Structure Of A Thermostable Esterase Complex With
Paraoxon
pdb|3DOI|B Chain B, Crystal Structure Of A Thermostable Esterase Complex With
Paraoxon
Length = 380
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 20/41 (48%)
Query: 344 IRIWVYSGDTDGALPVTCTRYAVKKLGTPVRTAWYPWYTQG 384
I IWV+ + D +PV +R VKKL Y Y +G
Sbjct: 309 IPIWVFHAEDDPVVPVENSRVLVKKLAEIGGKVRYTEYEKG 349
>pdb|1XOV|A Chain A, The Crystal Structure Of The Listeria Monocytogenes
Bacteriophage Psa Endolysin Plypsa
Length = 326
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 6/70 (8%)
Query: 313 TEIANSGEINR--NWKDKPQTVLPIIQELMA---EGIRIWVYSGDTDG-ALPVTCTRYAV 366
T S +N+ NW + + I L A G+ +W Y+GD G L V +
Sbjct: 64 TSTTQSANLNKIVNWHNANPADVHISVHLNAGKGTGVEVWYYAGDEKGRKLAVEISAKMA 123
Query: 367 KKLGTPVRTA 376
K LG P R A
Sbjct: 124 KALGLPNRGA 133
>pdb|2F4N|A Chain A, Crystal Structure Of Protein Mj1651 From Methanococcus
Jannaschii Dsm 2661, Pfam Duf62
pdb|2F4N|B Chain B, Crystal Structure Of Protein Mj1651 From Methanococcus
Jannaschii Dsm 2661, Pfam Duf62
pdb|2F4N|C Chain C, Crystal Structure Of Protein Mj1651 From Methanococcus
Jannaschii Dsm 2661, Pfam Duf62
Length = 273
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 16/73 (21%), Positives = 36/73 (49%)
Query: 35 ELSKERDNYALTSYSSDIYAVAGHSALLNSPQDGLKDKDKIESLPGQPLGVNFDQYSGYV 94
++ +ER + T + D+YAV G L+N+ DG + + ++ + ++ D++ +
Sbjct: 126 KIDEERYKPSSTFHGRDVYAVVGAEILINNGYDGEELDEXVKIDETKKRVIHIDRFGNII 185
Query: 95 NVDSQDGRSLFYY 107
+D + YY
Sbjct: 186 TNIKKDEVTFKYY 198
>pdb|2DEO|A Chain A, 1510-N Membrane Protease Specific For A Stomatin Homolog
From Pyrococcus Horikoshii
pdb|2DEO|B Chain B, 1510-N Membrane Protease Specific For A Stomatin Homolog
From Pyrococcus Horikoshii
Length = 230
Score = 28.5 bits (62), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 18/81 (22%), Positives = 34/81 (41%), Gaps = 14/81 (17%)
Query: 75 IESLPGQPLGVNFDQYSGYVNVDSQDGRSLFYYFVESPQ-------------NSSSKPLV 121
+ + GQ +DQ+ Y+ + QD +++P S P++
Sbjct: 12 VAQIKGQITSYTYDQFDRYITIAEQDNAEAIIIELDTPGGRADAXXNIVQRIQQSKIPVI 71
Query: 122 LWLNGGPGFSSFGAGTMMELG 142
+++ PG S+ AGT + LG
Sbjct: 72 IYVY-PPGASAASAGTYIALG 91
>pdb|3BPP|A Chain A, 1510-N Membrane Protease K138a Mutant Specific For A
Stomatin Homolog From Pyrococcus Horikoshii
pdb|3VIV|A Chain A, 1510-N Membrane-Bound Stomatin-Specific Protease K138a
Mutant In Complex With A Substrate Peptide
pdb|3VIV|B Chain B, 1510-N Membrane-Bound Stomatin-Specific Protease K138a
Mutant In Complex With A Substrate Peptide
Length = 230
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 18/81 (22%), Positives = 34/81 (41%), Gaps = 14/81 (17%)
Query: 75 IESLPGQPLGVNFDQYSGYVNVDSQDGRSLFYYFVESPQ-------------NSSSKPLV 121
+ + GQ +DQ+ Y+ + QD +++P S P++
Sbjct: 12 VAQIKGQITSYTYDQFDRYITIAEQDNAEAIIIELDTPGGRADAMMNIVQRIQQSKIPVI 71
Query: 122 LWLNGGPGFSSFGAGTMMELG 142
+++ PG S+ AGT + LG
Sbjct: 72 IYVY-PPGASAASAGTYIALG 91
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,457,796
Number of Sequences: 62578
Number of extensions: 650282
Number of successful extensions: 1463
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1408
Number of HSP's gapped (non-prelim): 33
length of query: 432
length of database: 14,973,337
effective HSP length: 102
effective length of query: 330
effective length of database: 8,590,381
effective search space: 2834825730
effective search space used: 2834825730
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)