BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042006
(119 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2WG7|A Chain A, Structure Of Oryza Sativa (Rice) Pla2
pdb|2WG7|B Chain B, Structure Of Oryza Sativa (Rice) Pla2
pdb|2WG9|A Chain A, Structure Of Oryza Sativa (Rice) Pla2, Complex With
Octanoic Acid
pdb|2WG9|B Chain B, Structure Of Oryza Sativa (Rice) Pla2, Complex With
Octanoic Acid
Length = 130
Score = 67.4 bits (163), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 9 CSRTCVAENCNSVGI-RYRKYCRVGWSDCHGEKPCDDLDACCKIHDECVDKKG--LTNIK 65
CSRTC ++ C + RY KYC + +S C GE+PCD LDACC +HD CVD N
Sbjct: 19 CSRTCESQFCTIAPLLRYGKYCGILYSGCPGERPCDALDACCMVHDHCVDTHNDDYLNTM 78
Query: 66 CHEKFKRCIKKVQKS 80
C+E CI +V +
Sbjct: 79 CNENLLSCIDRVSGA 93
>pdb|2WG8|A Chain A, Structure Of Oryza Sativa (Rice) Pla2, Orthorhombic
Crystal Form
Length = 129
Score = 67.4 bits (163), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 9 CSRTCVAENCNSVGI-RYRKYCRVGWSDCHGEKPCDDLDACCKIHDECVDKKG--LTNIK 65
CSRTC ++ C + RY KYC + +S C GE+PCD LDACC +HD CVD N
Sbjct: 18 CSRTCESQFCTIAPLLRYGKYCGILYSGCPGERPCDALDACCMVHDHCVDTHNDDYLNTM 77
Query: 66 CHEKFKRCIKKVQKS 80
C+E CI +V +
Sbjct: 78 CNENLLSCIDRVSGA 92
>pdb|2WG8|B Chain B, Structure Of Oryza Sativa (Rice) Pla2, Orthorhombic
Crystal Form
pdb|2WG8|C Chain C, Structure Of Oryza Sativa (Rice) Pla2, Orthorhombic
Crystal Form
Length = 129
Score = 67.4 bits (163), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 9 CSRTCVAENCNSVGI-RYRKYCRVGWSDCHGEKPCDDLDACCKIHDECVDKKG--LTNIK 65
CSRTC ++ C + RY KYC + +S C GE+PCD LDACC +HD CVD N
Sbjct: 18 CSRTCESQFCTIAPLLRYGKYCGILYSGCPGERPCDALDACCMVHDHCVDTHNDDYLNTM 77
Query: 66 CHEKFKRCIKKVQKS 80
C+E CI +V +
Sbjct: 78 CNENLLSCIDRVSGA 92
>pdb|1AE7|A Chain A, Notexin, A Presynaptic Neurotoxic Phospholipase A2
pdb|4E4C|A Chain A, Crystal Structure Of Notexin At 1.8 A Resolution
Length = 119
Score = 33.9 bits (76), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
Query: 23 IRYRKYCRVGWSDCHGEKPCDDLDACCKIHDECVDKKG 60
+ Y YC G S P D+LD CCKIHD+C D+ G
Sbjct: 23 MDYGCYCGAGGSG----TPVDELDRCCKIHDDCYDEAG 56
>pdb|1MKS|A Chain A, Carboxylic Ester Hydrolase, Trigonal Form Of The Triple
Mutant
pdb|1MKU|A Chain A, Carboxylic Ester Hydrolase, Orthorhombic Form Of The
Triple Mutant
Length = 123
Score = 32.0 bits (71), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 28/72 (38%), Gaps = 12/72 (16%)
Query: 24 RYRKYCRVGWSDCHGEKPCDDLDACCKIHDECVDKKGLTNIKCHEKFKRCIKKVQKSGNV 83
Y YC +G S P DDLD CC+ HD C + +K C V
Sbjct: 24 NYGCYCGLGGSG----TPVDDLDRCCQTHDNCFKQA--------KKLDSCKVLVDNPYTN 71
Query: 84 GFSYKCPYDTVV 95
FSY C + +
Sbjct: 72 NFSYSCSNNEIT 83
>pdb|2WQ5|A Chain A, Non-Antibiotic Properties Of Tetracyclines: Structural
Basis For Inhibition Of Secretory Phospholipase A2
Length = 119
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 13/55 (23%)
Query: 41 PCDDLDACCKIHDECVDKKGLTNIKCHEKFKRCIKKVQKSGNVGFSYKCPYDTVV 95
P DDLD CC++HD C ++ EK +C + +SYKC T+
Sbjct: 36 PVDDLDRCCQVHDNCYNEA--------EKISKCWPFFKT-----YSYKCSQGTLT 77
>pdb|3V9M|A Chain A, Phospholipase Acii4 From Australian King Brown Snake
pdb|3V9M|B Chain B, Phospholipase Acii4 From Australian King Brown Snake
Length = 118
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 29 CRVGWSDCHGEKPCDDLDACCKIHDECVDKKG 60
C GW P D+LD CC++HD C ++ G
Sbjct: 27 CYCGWGG--SGTPVDELDRCCQVHDNCYEQAG 56
>pdb|3VC0|A Chain A, Crystal Structure Of Taipoxin Beta Subunit Isoform 1
Length = 118
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 4/33 (12%)
Query: 23 IRYRKYCRVGWSDCHGEKPCDDLDACCKIHDEC 55
+ Y YC G S P DDLD CC++HDEC
Sbjct: 23 MNYGCYCGKGGSG----TPVDDLDRCCQVHDEC 51
>pdb|1S6B|B Chain B, X-ray Crystal Structure Of A Complex Formed Between Two
Homologous Isoforms Of Phospholipase A2 From Naja Naja
Sagittifera: Principle Of Molecular Association And
Inactivation
pdb|1XXW|B Chain B, Structure Of Zinc Induced Heterodimer Of Two Calcium
Free Isoforms Of Phospholipase A2 From Naja Naja
Sagittifera At 2.7a Resolution
pdb|2RD4|B Chain B, Design Of Specific Inhibitors Of Phospholipase A2:
Crystal Structure Of The Complex Of Phospholipase A2
With Pentapeptide Leu-Val-Phe-Phe-Ala At 2.9 A
Resolution
Length = 119
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 13/57 (22%)
Query: 41 PCDDLDACCKIHDECVDKKGLTNIKCHEKFKRCIKKVQKSGNVGFSYKCPYDTVVPT 97
P DDLD CC++HD C ++ EK C + + +SY+C T+ T
Sbjct: 36 PVDDLDRCCQVHDNCYNEA--------EKISGCNPRFRT-----YSYECTAGTLTCT 79
>pdb|2NOT|A Chain A, Notechis Ii-5, Neurotoxic Phospholipase A2 From Notechis
Scutatus Scutatus
pdb|2NOT|B Chain B, Notechis Ii-5, Neurotoxic Phospholipase A2 From Notechis
Scutatus Scutatus
Length = 119
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 5/37 (13%)
Query: 29 CRVGWSDCHGEKPCDDLDACCKIHDEC---VDKKGLT 62
C GW P D+LD CCKIHD+C +KKG +
Sbjct: 27 CYCGWGG--SGTPVDELDRCCKIHDDCYSDAEKKGCS 61
>pdb|1Y75|B Chain B, A New Form Of Catalytically Inactive Phospholipase A2
With An Unusual Disulphide Bridge Cys 32- Cys 49
Reveals Recognition For N- Acetylglucosmine
Length = 118
Score = 30.4 bits (67), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 5/36 (13%)
Query: 25 YRKYCRVGWSDCHGEKPCDDLDACCKIHDECVDKKG 60
Y YC G P DDLD CC++HD C + G
Sbjct: 24 YGCYCGSG-----SGSPVDDLDRCCQVHDNCYNAGG 54
>pdb|1IRB|A Chain A, Carboxylic Ester Hydrolase
Length = 123
Score = 30.4 bits (67), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 28/72 (38%), Gaps = 12/72 (16%)
Query: 24 RYRKYCRVGWSDCHGEKPCDDLDACCKIHDECVDKKGLTNIKCHEKFKRCIKKVQKSGNV 83
Y YC +G S P DDLD CC+ HD C + +K C V
Sbjct: 24 NYGCYCGLGGSG----TPVDDLDRCCQTHDNCYKQA--------KKLDSCKVLVDNPYTN 71
Query: 84 GFSYKCPYDTVV 95
+SY C + +
Sbjct: 72 NYSYSCSNNEIT 83
>pdb|4BP2|A Chain A, Crystallographic Refinement Of Bovine Pro-Phospholipase
A2 At 1.6 Angstroms Resolution
Length = 130
Score = 30.4 bits (67), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 28/72 (38%), Gaps = 12/72 (16%)
Query: 24 RYRKYCRVGWSDCHGEKPCDDLDACCKIHDECVDKKGLTNIKCHEKFKRCIKKVQKSGNV 83
Y YC +G S P DDLD CC+ HD C + +K C V
Sbjct: 31 NYGCYCGLGGSG----TPVDDLDRCCQTHDNCYKQA--------KKLDSCKVLVDNPYTN 78
Query: 84 GFSYKCPYDTVV 95
+SY C + +
Sbjct: 79 NYSYSCSNNEIT 90
>pdb|2BP2|A Chain A, The Structure Of Bovine Pancreatic Prophospholipase A2
At 3.0 Angstroms Resolution
Length = 130
Score = 30.4 bits (67), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 28/72 (38%), Gaps = 12/72 (16%)
Query: 24 RYRKYCRVGWSDCHGEKPCDDLDACCKIHDECVDKKGLTNIKCHEKFKRCIKKVQKSGNV 83
Y YC +G S P DDLD CC+ HD C + +K C V
Sbjct: 31 NYGCYCGLGGSG----TPVDDLDRCCQTHDNCYKQA--------KKLDSCKVLVDNPYTN 78
Query: 84 GFSYKCPYDTVV 95
+SY C + +
Sbjct: 79 NYSYSCSNNEIT 90
>pdb|1MH2|A Chain A, Crystal Structure Of A Zinc Containing Dimer Of
Phospholipase A2 From The Venom Of Indian Cobra (Naja
Naja Sagittifera)
Length = 119
Score = 30.4 bits (67), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 4/34 (11%)
Query: 25 YRKYCRVGWSDCHGEKPCDDLDACCKIHDECVDK 58
Y YC G S P DDLD+CC++HD C +
Sbjct: 24 YGCYCGRGGSG----TPIDDLDSCCQVHDNCYNS 53
>pdb|3GCI|A Chain A, Crystal Structure Of The Complex Formed Between A New
Isoform Of Phospholipase A2 With C-Terminal Amyloid
Beta Heptapeptide At 2 A Resolution
Length = 119
Score = 30.4 bits (67), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 31/72 (43%), Gaps = 19/72 (26%)
Query: 25 YRKYCRVGWSDCHGEKPCDDLDACCKIHDECVDKKGLTNIK-CHEKFKRCIKKVQKSGNV 83
Y YC G S P DDLD CC+ HD C ++ NI C KFK
Sbjct: 24 YGCYCGKGGSG----TPVDDLDRCCQTHDNCYNEA--ENISGCRPKFKT----------- 66
Query: 84 GFSYKCPYDTVV 95
+SY+C T+
Sbjct: 67 -YSYECTQGTLT 77
>pdb|1KVX|A Chain A, Carboxylic Ester Hydrolase, Single Mutant D99a Of Bovine
Pancreatic Pla2, 1.9 A Orthorhombic Form
Length = 123
Score = 30.0 bits (66), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 28/72 (38%), Gaps = 12/72 (16%)
Query: 24 RYRKYCRVGWSDCHGEKPCDDLDACCKIHDECVDKKGLTNIKCHEKFKRCIKKVQKSGNV 83
Y YC +G S P DDLD CC+ HD C + +K C V
Sbjct: 24 NYGCYCGLGGSG----TPVDDLDRCCQTHDNCYKQA--------KKLDSCKVLVDNPYTN 71
Query: 84 GFSYKCPYDTVV 95
+SY C + +
Sbjct: 72 NYSYSCSNNEIT 83
>pdb|1CEH|A Chain A, Structure And Function Of The Catalytic Site Mutant
Asp99asn Of Phospholipase A2: Absence Of Conserved
Structural Water
Length = 123
Score = 30.0 bits (66), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 28/72 (38%), Gaps = 12/72 (16%)
Query: 24 RYRKYCRVGWSDCHGEKPCDDLDACCKIHDECVDKKGLTNIKCHEKFKRCIKKVQKSGNV 83
Y YC +G S P DDLD CC+ HD C + +K C V
Sbjct: 24 NYGCYCGLGGSG----TPVDDLDRCCQTHDNCYKQA--------KKLDSCKVLVDNPYTN 71
Query: 84 GFSYKCPYDTVV 95
+SY C + +
Sbjct: 72 NYSYSCSNNEIT 83
>pdb|3VBZ|A Chain A, Crystal Structure Of Taipoxin Beta Subunit Isoform 2
pdb|3VBZ|B Chain B, Crystal Structure Of Taipoxin Beta Subunit Isoform 2
Length = 118
Score = 30.0 bits (66), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 11/15 (73%), Positives = 13/15 (86%)
Query: 41 PCDDLDACCKIHDEC 55
P DDLD CC++HDEC
Sbjct: 37 PVDDLDRCCQVHDEC 51
>pdb|1P7O|A Chain A, Crystal Structure Of Phospholipase A2 (Mipla4) From
Micropechis Ikaheka
pdb|1P7O|B Chain B, Crystal Structure Of Phospholipase A2 (Mipla4) From
Micropechis Ikaheka
pdb|1P7O|C Chain C, Crystal Structure Of Phospholipase A2 (Mipla4) From
Micropechis Ikaheka
pdb|1P7O|D Chain D, Crystal Structure Of Phospholipase A2 (Mipla4) From
Micropechis Ikaheka
pdb|1P7O|E Chain E, Crystal Structure Of Phospholipase A2 (Mipla4) From
Micropechis Ikaheka
pdb|1P7O|F Chain F, Crystal Structure Of Phospholipase A2 (Mipla4) From
Micropechis Ikaheka
Length = 124
Score = 30.0 bits (66), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 26/65 (40%), Gaps = 12/65 (18%)
Query: 25 YRKYCRVGWSDCHGEKPCDDLDACCKIHDECVDKKGLTNIKCHEKFKRCIKKVQKSGNVG 84
Y YC G S P D+LD CC+ HD C DK EK C +
Sbjct: 25 YGCYCGKGGSG----TPVDELDRCCQTHDNCYDKA--------EKLPECKGILSGPYFNT 72
Query: 85 FSYKC 89
+SY C
Sbjct: 73 YSYDC 77
>pdb|1GH4|A Chain A, Structure Of The Triple Mutant (K56m, K120m, K121m) Of
Phospholipase A2
Length = 123
Score = 30.0 bits (66), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 29/72 (40%), Gaps = 12/72 (16%)
Query: 24 RYRKYCRVGWSDCHGEKPCDDLDACCKIHDECVDKKGLTNIKCHEKFKRCIKKVQKSGNV 83
Y YC +G S P DDLD CC+ HD C K+ + K C V
Sbjct: 24 NYGCYCGLGGSG----TPVDDLDRCCQTHDNCY-KQAM-------KLDSCKVLVDNPYTN 71
Query: 84 GFSYKCPYDTVV 95
+SY C + +
Sbjct: 72 NYSYSCSNNEIT 83
>pdb|1BVM|A Chain A, Solution Nmr Structure Of Bovine Pancreatic
Phospholipase A2, 20 Structures
pdb|1G4I|A Chain A, Crystal Structure Of The Bovine Pancreatic Phospholipase
A2 At 0.97a
pdb|1BP2|A Chain A, Structure Of Bovine Pancreatic Phospholipase A2 At 1.7
Angstroms Resolution
pdb|1FDK|A Chain A, Carboxylic Ester Hydrolase (Pla2-Mj33 Inhibitor Complex)
pdb|1MKT|A Chain A, Carboxylic Ester Hydrolase, 1.72 Angstrom Trigonal Form
Of The Bovine Recombinant Pla2 Enzyme
pdb|1MKV|A Chain A, Carboxylic Ester Hydrolase Complex (Pla2 + Transition
State Analog Complex)
pdb|1UNE|A Chain A, Carboxylic Ester Hydrolase, 1.5 Angstrom Orthorhombic
Form Of The Bovine Recombinant Pla2
pdb|2BPP|A Chain A, Phospholipase A2 Engineering. X-Ray Structural And
Functional Evidence For The Interaction Of Lysine-56
With Substrates
Length = 123
Score = 30.0 bits (66), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 28/72 (38%), Gaps = 12/72 (16%)
Query: 24 RYRKYCRVGWSDCHGEKPCDDLDACCKIHDECVDKKGLTNIKCHEKFKRCIKKVQKSGNV 83
Y YC +G S P DDLD CC+ HD C + +K C V
Sbjct: 24 NYGCYCGLGGSG----TPVDDLDRCCQTHDNCYKQA--------KKLDSCKVLVDNPYTN 71
Query: 84 GFSYKCPYDTVV 95
+SY C + +
Sbjct: 72 NYSYSCSNNEIT 83
>pdb|1MH2|B Chain B, Crystal Structure Of A Zinc Containing Dimer Of
Phospholipase A2 From The Venom Of Indian Cobra (Naja
Naja Sagittifera)
Length = 119
Score = 30.0 bits (66), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 30/73 (41%), Gaps = 17/73 (23%)
Query: 25 YRKYCRVGWSDCHGEKPCDDLDACCKIHDECVDKKGLTNIKCHEKFKRCIKKVQKSGNVG 84
Y YC G S P DDLD CC+ HD C ++ EK C + +
Sbjct: 24 YGCYCGRGGS----GTPSDDLDRCCQTHDNCYNEA--------EKISGCNPRFRT----- 66
Query: 85 FSYKCPYDTVVPT 97
+SY C T+ T
Sbjct: 67 YSYACTAGTLTCT 79
>pdb|3BP2|A Chain A, Role Of The N-Terminus In The Interaction Of Pancreatic
Phospholipase A2 With Aggregated Substrates. Properties
And Crystal Structure Of Transaminated Phospholipase A2
Length = 123
Score = 30.0 bits (66), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 28/72 (38%), Gaps = 12/72 (16%)
Query: 24 RYRKYCRVGWSDCHGEKPCDDLDACCKIHDECVDKKGLTNIKCHEKFKRCIKKVQKSGNV 83
Y YC +G S P DDLD CC+ HD C + +K C V
Sbjct: 24 NYGCYCGLGGSG----TPVDDLDRCCQTHDNCYKQA--------KKLDSCKVLVDNPYTN 71
Query: 84 GFSYKCPYDTVV 95
+SY C + +
Sbjct: 72 NYSYSCSNNEIT 83
>pdb|3ELO|A Chain A, Crystal Structure Of Human Pancreatic Prophospholipase
A2
Length = 133
Score = 30.0 bits (66), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
Query: 24 RYRKYCRVGWSDCHGEKPCDDLDACCKIHDECVDK 58
Y YC +G S P D+LD CC+ HD C D+
Sbjct: 31 NYGCYCGLGGSG----TPVDELDKCCQTHDNCYDQ 61
>pdb|2OSH|A Chain A, Crystal Structure Of Natratoxin, A Snake Spla2 That
Blocks A-Type K+ Channel
Length = 119
Score = 29.6 bits (65), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 30/71 (42%), Gaps = 17/71 (23%)
Query: 25 YRKYCRVGWSDCHGEKPCDDLDACCKIHDECVDKKGLTNIKCHEKFKRCIKKVQKSGNVG 84
Y YC G S P DDLD CC++HD C ++ EK C +
Sbjct: 24 YGCYCGKGGSG----TPVDDLDRCCQVHDNCYNEA--------EKISGCWPYFKT----- 66
Query: 85 FSYKCPYDTVV 95
+SY+C T+
Sbjct: 67 YSYECSQGTLT 77
>pdb|1POB|A Chain A, Crystal Structure Of Cobra-Venom Phospholipase A2 In A
Complex With A Transition-State Analogue
pdb|1POB|B Chain B, Crystal Structure Of Cobra-Venom Phospholipase A2 In A
Complex With A Transition-State Analogue
pdb|1POA|A Chain A, Interfacial Catalysis: The Mechanism Of Phospholipase A2
Length = 118
Score = 29.6 bits (65), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 30/71 (42%), Gaps = 17/71 (23%)
Query: 25 YRKYCRVGWSDCHGEKPCDDLDACCKIHDECVDKKGLTNIKCHEKFKRCIKKVQKSGNVG 84
Y YC G S P DDLD CC++HD C ++ EK C +
Sbjct: 24 YGCYCGRGGSG----TPVDDLDRCCQVHDNCYNEA--------EKISGCWPYFKT----- 66
Query: 85 FSYKCPYDTVV 95
+SY+C T+
Sbjct: 67 YSYECSQGTLT 77
>pdb|1BPQ|A Chain A, Phospholipase A2 Engineering. X-Ray Structural And
Functional Evidence For The Interaction Of Lysine-56
With Substrates
Length = 123
Score = 29.6 bits (65), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 29/72 (40%), Gaps = 12/72 (16%)
Query: 24 RYRKYCRVGWSDCHGEKPCDDLDACCKIHDECVDKKGLTNIKCHEKFKRCIKKVQKSGNV 83
Y YC +G S P DDLD CC+ HD C K+ + K C V
Sbjct: 24 NYGCYCGLGGSG----TPVDDLDRCCQTHDNCY-KQAM-------KLDSCKVLVDNPYTN 71
Query: 84 GFSYKCPYDTVV 95
+SY C + +
Sbjct: 72 NYSYSCSNNEIT 83
>pdb|2BCH|A Chain A, A Possible Of Second Calcium Ion In Interfacial Binding:
Atomic And Medium Resolution Crystal Structures Of The
Quadruple Mutant Of Phospholipase A2
pdb|2BD1|A Chain A, A Possible Role Of The Second Calcium Ion In Interfacial
Binding: Atomic And Medium Resolution Crystal
Structures Of The Quadruple Mutant Of Phospholipase A2
pdb|2BD1|B Chain B, A Possible Role Of The Second Calcium Ion In Interfacial
Binding: Atomic And Medium Resolution Crystal
Structures Of The Quadruple Mutant Of Phospholipase A2
Length = 123
Score = 29.6 bits (65), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 27/72 (37%), Gaps = 12/72 (16%)
Query: 24 RYRKYCRVGWSDCHGEKPCDDLDACCKIHDECVDKKGLTNIKCHEKFKRCIKKVQKSGNV 83
Y YC +G S P DDLD CC+ HD C + K C V
Sbjct: 24 NYGCYCGLGGSG----TPVDDLDRCCQTHDNCYMQA--------MKLDSCKVLVDNPYTN 71
Query: 84 GFSYKCPYDTVV 95
+SY C + +
Sbjct: 72 NYSYSCSNNEIT 83
>pdb|1PWO|A Chain A, Crystal Structure Of Phospholipase A2 (Mipla2) From
Micropechis Ikaheka
pdb|1PWO|B Chain B, Crystal Structure Of Phospholipase A2 (Mipla2) From
Micropechis Ikaheka
pdb|1PWO|C Chain C, Crystal Structure Of Phospholipase A2 (Mipla2) From
Micropechis Ikaheka
pdb|1PWO|D Chain D, Crystal Structure Of Phospholipase A2 (Mipla2) From
Micropechis Ikaheka
Length = 124
Score = 29.3 bits (64), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 26/65 (40%), Gaps = 12/65 (18%)
Query: 25 YRKYCRVGWSDCHGEKPCDDLDACCKIHDECVDKKGLTNIKCHEKFKRCIKKVQKSGNVG 84
Y YC G S P D+LD CC+ HD C DK EK C +
Sbjct: 25 YGCYCGKGGSG----TPVDELDRCCQTHDNCYDKA--------EKLPECKGILSGPYVNT 72
Query: 85 FSYKC 89
+SY C
Sbjct: 73 YSYDC 77
>pdb|1PSH|A Chain A, Crystal Structure Of Phospholipase A2 From Indian Cobra
Reveals A Trimeric Association
pdb|1PSH|B Chain B, Crystal Structure Of Phospholipase A2 From Indian Cobra
Reveals A Trimeric Association
pdb|1PSH|C Chain C, Crystal Structure Of Phospholipase A2 From Indian Cobra
Reveals A Trimeric Association
pdb|1A3F|A Chain A, Phospholipase A2 (Pla2) From Naja Naja Venom
pdb|1A3F|B Chain B, Phospholipase A2 (Pla2) From Naja Naja Venom
pdb|1A3F|C Chain C, Phospholipase A2 (Pla2) From Naja Naja Venom
pdb|1A3D|A Chain A, Phospholipase A2 (Pla2) From Naja Naja Venom
Length = 119
Score = 29.3 bits (64), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 13/55 (23%)
Query: 41 PCDDLDACCKIHDECVDKKGLTNIKCHEKFKRCIKKVQKSGNVGFSYKCPYDTVV 95
P DDLD CC++HD C ++ EK C + +SY+C T+
Sbjct: 36 PVDDLDRCCQVHDNCYNEA--------EKISGCWPYFKT-----YSYECSQGTLT 77
>pdb|1OWS|A Chain A, Crystal Structure Of A C49 Phospholipase A2 From Indian
Cobra Reveals Carbohydrate Binding In The Hydrophobic
Channel
Length = 118
Score = 29.3 bits (64), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 36 CHGEKPCDDLDACCKIHDECVDKKGLTNIKCHEKFK 71
C P DDLD CC++H C + G + C KFK
Sbjct: 30 CGSGTPTDDLDRCCQVHCNCYRQAGEIS-GCRPKFK 64
>pdb|1VL9|A Chain A, Atomic Resolution (0.97a) Structure Of The Triple Mutant
(K53,56,121m) Of Bovine Pancreatic Phospholipase A2
pdb|2B96|A Chain A, Third Calcium Ion Found In An Inhibitor Bound
Phospholipase A2
Length = 123
Score = 29.3 bits (64), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 4/32 (12%)
Query: 24 RYRKYCRVGWSDCHGEKPCDDLDACCKIHDEC 55
Y YC +G S P DDLD CC+ HD C
Sbjct: 24 NYGCYCGLGGSG----TPVDDLDRCCQTHDNC 51
>pdb|1O2E|A Chain A, Structure Of The Triple Mutant (K53,56,120m) + Anisic
Acid Complex Of Phospholipase A2
pdb|1O3W|A Chain A, Structure Of The Inhibitor Free Triple Mutant
(K53,56,120m) Of Phospholipase A2
pdb|1VKQ|A Chain A, A Re-Determination Of The Structure Of The Triple Mutant
(K53,56,120m) Of Phospholipase A2 At 1.6a Resolution
Using Sulphur-Sas At 1.54a Wavelength
Length = 123
Score = 29.3 bits (64), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 4/32 (12%)
Query: 24 RYRKYCRVGWSDCHGEKPCDDLDACCKIHDEC 55
Y YC +G S P DDLD CC+ HD C
Sbjct: 24 NYGCYCGLGGSG----TPVDDLDRCCQTHDNC 51
>pdb|1OXR|A Chain A, Aspirin Induces Its Anti-inflammatory Effects Through
Its Specific Binding To Phospholipase A2: Crystal
Structure Of The Complex Formed Between Phospholipase
A2 And Aspirin At 1.9a Resolution
pdb|1SZ8|A Chain A, Crystal Structure Of An Acidic Phospholipase A2 From
Naja Naja Sagittifera At 1.5 A Resolution
pdb|1TD7|A Chain A, Interactions Of A Specific Non-steroidal
Anti-inflammatory Drug (nsaid) With Group I
Phospholipase A2 (pla2): Crystal Structure Of The
Complex Formed Between Pla2 And Niflumic Acid At 2.5 A
Resolution
pdb|1YXL|A Chain A, Crystal Structure Of A Novel Phospholipase A2 From Naja
Naja Sagittifera At 1.5 A Resolution
Length = 119
Score = 29.3 bits (64), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 4/34 (11%)
Query: 25 YRKYCRVGWSDCHGEKPCDDLDACCKIHDECVDK 58
Y YC G S P DDLD CC++HD C ++
Sbjct: 24 YGCYCGKGGSG----TPVDDLDRCCQVHDNCYNE 53
>pdb|1C74|A Chain A, Structure Of The Double Mutant (K53,56m) Of
Phospholipase A2
pdb|2BAX|A Chain A, Atomic Resolution Structure Of The Double Mutant
(K53,56m) Of Bovine Pancreatic Phospholipase A2
Length = 123
Score = 29.3 bits (64), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 4/32 (12%)
Query: 24 RYRKYCRVGWSDCHGEKPCDDLDACCKIHDEC 55
Y YC +G S P DDLD CC+ HD C
Sbjct: 24 NYGCYCGLGGSG----TPVDDLDRCCQTHDNC 51
>pdb|1MH7|A Chain A, Crystal Structure Of A Calcium-Free Isoform Of
Phospholipase A2 From Naja Naja Sagittifera At 2.0 A
Resolution
Length = 119
Score = 29.3 bits (64), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 10/18 (55%), Positives = 14/18 (77%)
Query: 41 PCDDLDACCKIHDECVDK 58
P DDLD CC++HD C ++
Sbjct: 36 PTDDLDRCCQVHDNCYNQ 53
>pdb|1MH8|A Chain A, Crystal Structure Of A Phopholipase A2 Monomer With
Isoleucine At Second Position
Length = 119
Score = 29.3 bits (64), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 10/18 (55%), Positives = 14/18 (77%)
Query: 41 PCDDLDACCKIHDECVDK 58
P DDLD CC++HD C ++
Sbjct: 36 PTDDLDRCCQVHDNCYNQ 53
>pdb|1Y75|A Chain A, A New Form Of Catalytically Inactive Phospholipase A2
With An Unusual Disulphide Bridge Cys 32- Cys 49
Reveals Recognition For N- Acetylglucosmine
Length = 118
Score = 29.3 bits (64), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 36 CHGEKPCDDLDACCKIHDECVDKKGLTNIKCHEKFK 71
C P DDLD CC++H C + G + C KFK
Sbjct: 30 CGSGTPVDDLDRCCQVHCNCYRQAGEIS-GCRPKFK 64
>pdb|1YXH|A Chain A, Crystal Structure Of A Novel Phospholipase A2 From Naja
Naja Sagittifera With A Strong Anticoagulant Activity
Length = 126
Score = 29.3 bits (64), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 10/18 (55%), Positives = 14/18 (77%)
Query: 41 PCDDLDACCKIHDECVDK 58
P DDLD CC++HD C ++
Sbjct: 43 PVDDLDRCCQVHDNCYNQ 60
>pdb|1OZY|A Chain A, Crystal Structure Of Phospholipase A2 (mipla3) From
Micropechis Ikaheka
pdb|1OZY|B Chain B, Crystal Structure Of Phospholipase A2 (mipla3) From
Micropechis Ikaheka
Length = 121
Score = 29.3 bits (64), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Query: 25 YRKYCRVGWSDCHGEKPCDDLDACCKIHDECVDK 58
Y YC G S P D+LD CC+ HD C DK
Sbjct: 25 YGCYCGKGGSG----TPVDELDRCCQTHDYCYDK 54
>pdb|1OWS|B Chain B, Crystal Structure Of A C49 Phospholipase A2 From Indian
Cobra Reveals Carbohydrate Binding In The Hydrophobic
Channel
Length = 118
Score = 28.9 bits (63), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 16/36 (44%), Gaps = 5/36 (13%)
Query: 25 YRKYCRVGWSDCHGEKPCDDLDACCKIHDECVDKKG 60
Y YC G P DDLD CC+ HD C G
Sbjct: 24 YGCYCGSG-----SGSPTDDLDRCCQTHDNCYGAGG 54
>pdb|5P2P|A Chain A, X-Ray Structure Of Phospholipase A2 Complexed With A
Substrate-Derived Inhibitor
pdb|5P2P|B Chain B, X-Ray Structure Of Phospholipase A2 Complexed With A
Substrate-Derived Inhibitor
Length = 119
Score = 28.9 bits (63), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Query: 29 CRVGWSDCHGEKPCDDLDACCKIHDECV-DKKGLT 62
C GW P D+LD CC+ HD C D K L+
Sbjct: 27 CYCGWGG--SGTPVDELDRCCETHDNCYRDAKNLS 59
>pdb|1GP7|A Chain A, Acidic Phospholipase A2 From Venom Of Ophiophagus Hannah
pdb|1GP7|B Chain B, Acidic Phospholipase A2 From Venom Of Ophiophagus Hannah
pdb|1GP7|C Chain C, Acidic Phospholipase A2 From Venom Of Ophiophagus Hannah
Length = 151
Score = 28.9 bits (63), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 27/71 (38%), Gaps = 12/71 (16%)
Query: 25 YRKYCRVGWSDCHGEKPCDDLDACCKIHDECVDKKGLTNIKCHEKFKRCIKKVQKSGNVG 84
Y YC G S P D LD CC++HD C + +K C +
Sbjct: 52 YGCYCGAGGSG----TPVDKLDRCCQVHDNCYTQA--------QKLPACSSIMDSPYVKI 99
Query: 85 FSYKCPYDTVV 95
+SY C TV
Sbjct: 100 YSYDCSERTVT 110
>pdb|1S6B|A Chain A, X-ray Crystal Structure Of A Complex Formed Between Two
Homologous Isoforms Of Phospholipase A2 From Naja Naja
Sagittifera: Principle Of Molecular Association And
Inactivation
pdb|1XXW|A Chain A, Structure Of Zinc Induced Heterodimer Of Two Calcium
Free Isoforms Of Phospholipase A2 From Naja Naja
Sagittifera At 2.7a Resolution
pdb|2RD4|A Chain A, Design Of Specific Inhibitors Of Phospholipase A2:
Crystal Structure Of The Complex Of Phospholipase A2
With Pentapeptide Leu-Val-Phe-Phe-Ala At 2.9 A
Resolution
Length = 119
Score = 28.5 bits (62), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Query: 25 YRKYCRVGWSDCHGEKPCDDLDACCKIHDECVDK 58
Y YC G S P DDLD CC++HD C +
Sbjct: 24 YGCYCGRGGSG----TPIDDLDRCCQVHDNCYNS 53
>pdb|3P2P|A Chain A, Enhanced Activity And Altered Specificity Of
Phospholipase A2 By Deletion Of A Surface Loop
pdb|3P2P|B Chain B, Enhanced Activity And Altered Specificity Of
Phospholipase A2 By Deletion Of A Surface Loop
Length = 119
Score = 28.5 bits (62), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Query: 24 RYRKYCRVGWSDCHGEKPCDDLDACCKIHDECV-DKKGLT 62
Y YC +G S P D+LD CC+ HD C D K L+
Sbjct: 24 NYGCYCGLGGSG----TPVDELDRCCETHDNCYRDAKNLS 59
>pdb|2ZP3|A Chain A, Carboxylic Ester Hydrolase, Single Mutant D49n Of Bovine
Pancreatic Pla2 Enzyme
Length = 123
Score = 28.5 bits (62), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 28/72 (38%), Gaps = 12/72 (16%)
Query: 24 RYRKYCRVGWSDCHGEKPCDDLDACCKIHDECVDKKGLTNIKCHEKFKRCIKKVQKSGNV 83
Y YC +G S P DDLD CC+ H+ C + +K C V
Sbjct: 24 NYGCYCGLGGSG----TPVDDLDRCCQTHNNCYKQA--------KKLDSCKVLVDNPYTN 71
Query: 84 GFSYKCPYDTVV 95
+SY C + +
Sbjct: 72 NYSYSCSNNEIT 83
>pdb|1BUN|A Chain A, Structure Of Beta2-Bungarotoxin: Potassium Channel
Binding By Kunitz Modules And Targeted Phospholipase
Action
Length = 120
Score = 28.5 bits (62), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 29/71 (40%), Gaps = 17/71 (23%)
Query: 25 YRKYCRVGWSDCHGEKPCDDLDACCKIHDECVDKKGLTNIKCHEKFKRCIKKVQKSGNVG 84
Y YC G S +P D LD CC +HD C EK +C K Q
Sbjct: 25 YGCYCGAGGSG----RPIDALDRCCYVHDNCYGDA--------EKKHKCNPKTQS----- 67
Query: 85 FSYKCPYDTVV 95
+SYK T++
Sbjct: 68 YSYKLTKRTII 78
>pdb|1KVY|A Chain A, Carboxylic Ester Hydrolase, Single Mutant D49e
Coordinated To Calcium
Length = 123
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 28/72 (38%), Gaps = 12/72 (16%)
Query: 24 RYRKYCRVGWSDCHGEKPCDDLDACCKIHDECVDKKGLTNIKCHEKFKRCIKKVQKSGNV 83
Y YC +G S P DDLD CC+ H+ C + +K C V
Sbjct: 24 NYGCYCGLGGSG----TPVDDLDRCCQTHENCYKQA--------KKLDSCKVLVDNPYTN 71
Query: 84 GFSYKCPYDTVV 95
+SY C + +
Sbjct: 72 NYSYSCSNNEIT 83
>pdb|1POC|A Chain A, Crystal Structure Of Bee-venom Phospholipase A2 In A
Complex With A Transition-state Analogue
Length = 134
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 15/45 (33%)
Query: 46 DACCKIHDECVD-------KKGLTNIKCH--------EKFKRCIK 75
DACC+ HD C D K GLTN H +KF C+K
Sbjct: 28 DACCRTHDMCPDVMSAGESKHGLTNTASHTRLSCDCDDKFYDCLK 72
>pdb|1HN4|A Chain A, Prophospholipase A2 Dimer Complexed With Mj33, Sulfate,
And Calcium
pdb|1HN4|B Chain B, Prophospholipase A2 Dimer Complexed With Mj33, Sulfate,
And Calcium
Length = 131
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 5/42 (11%)
Query: 25 YRKYCRVGWSDCHGEKPCDDLDACCKIHDECV-DKKGLTNIK 65
Y YC +G S P D+LD CC+ HD C D K L + K
Sbjct: 32 YGCYCGLGGSG----TPVDELDRCCETHDNCYRDAKNLDSCK 69
>pdb|2PHI|A Chain A, A Large Conformational Change Is Found In The Crystal
Structure Of The Porcine Pancreatic Phospholipase A2
Point Mutant F63v
pdb|2PHI|B Chain B, A Large Conformational Change Is Found In The Crystal
Structure Of The Porcine Pancreatic Phospholipase A2
Point Mutant F63v
Length = 124
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
Query: 24 RYRKYCRVGWSDCHGEKPCDDLDACCKIHDECV-DKKGLTNIK 65
Y YC +G S P D+LD CC+ HD C D K L + K
Sbjct: 24 NYGCYCGLGGSG----TPVDELDRCCETHDNCYRDAKNLDSCK 62
>pdb|1FX9|A Chain A, Carboxylic Ester Hydrolase Complex (Dimeric Pla2 + Mj33
Inhibitor + Sulphate Ions)
pdb|1FX9|B Chain B, Carboxylic Ester Hydrolase Complex (Dimeric Pla2 + Mj33
Inhibitor + Sulphate Ions)
pdb|1FXF|A Chain A, Carboxylic Ester Hydrolase Complex (Dimeric Pla2 + Mj33
Inhibitor + Phosphate Ions)
pdb|1FXF|B Chain B, Carboxylic Ester Hydrolase Complex (Dimeric Pla2 + Mj33
Inhibitor + Phosphate Ions)
pdb|1L8S|A Chain A, Carboxylic Ester Hydrolase Complex (Dimeric Pla2 + Lpc-
Ether + Acetate + Phosphate Ions)
pdb|1L8S|B Chain B, Carboxylic Ester Hydrolase Complex (Dimeric Pla2 + Lpc-
Ether + Acetate + Phosphate Ions)
pdb|2AZY|A Chain A, Crystal Structure Of Porcine Pancreatic Phospholipase A2
In Complex With Cholate
pdb|2AZZ|A Chain A, Crystal Structure Of Porcine Pancreatic Phospholipase A2
In Complex With Taurocholate
pdb|2B00|A Chain A, Crystal Structure Of Porcine Pancreatic Phospholipase A2
In Complex With Glycocholate
pdb|2B01|A Chain A, Crystal Structure Of Porcine Pancreatic Phospholipase A2
In Complex With Taurochenodeoxycholate
pdb|2B03|A Chain A, Crystal Structure Of Porcine Pancreatic Phospholipase A2
In Complex With Taurochenodeoxycholate
pdb|2B04|A Chain A, Crystal Structure Of Porcine Pancreatic Phospholipase A2
In Complex With Glycochenodeoxycholate
pdb|1P2P|A Chain A, Structure Of Porcine Pancreatic Phospholipase A2 At 2.6
Angstroms Resolution And Comparison With Bovine
Phospholipase A2
pdb|1PIR|A Chain A, Solution Structure Of Porcine Pancreatic Phospholipase
A2
pdb|1PIS|A Chain A, Solution Structure Of Porcine Pancreatic Phospholipase
A2
pdb|1SFV|A Chain A, Porcine Pancreas Phospholipase A2, Nmr, Minimized
Average Structure
pdb|1SFW|A Chain A, Porcine Pancreas Phospholipase A2, Nmr, 18 Structures
pdb|4P2P|A Chain A, An Independent Crystallographic Refinement Of Porcine
Phospholipase A2 At 2.4 Angstroms Resolution
pdb|3HSW|A Chain A, Crystal Structure Of Porcine Pancreatic Phospholipase A2
In Complex With 2-Methoxycyclohexa-2-5-Diene-1,4-Dione
pdb|3L30|A Chain A, Crystal Structure Of Porcine Pancreatic Phospholipase A2
Complexed With Dihydroxyberberine
pdb|3FVI|A Chain A, Crystal Structure Of Complex Of Phospholipase A2 With
Octyl Sulfates
pdb|3FVI|B Chain B, Crystal Structure Of Complex Of Phospholipase A2 With
Octyl Sulfates
pdb|3FVI|C Chain C, Crystal Structure Of Complex Of Phospholipase A2 With
Octyl Sulfates
pdb|3FVI|D Chain D, Crystal Structure Of Complex Of Phospholipase A2 With
Octyl Sulfates
pdb|3FVJ|A Chain A, Crystal Structure Of Phospholipase A2 1b Crystallized In
The Presence Of Octyl Sulfate
pdb|3O4M|A Chain A, Crystal Structure Of Porcine Pancreatic Phospholipase A2
In Complex With 1,2-Dihydroxybenzene
pdb|3QLM|A Chain A, Crystal Structure Of Porcine Pancreatic Phospholipase A2
In Complex With N-Hexadecanoic Acid
pdb|4DBK|A Chain A, Crystal Structure Of Porcine Pancreatic Phospholipase A2
Complexed With Berberine
pdb|4G5I|A Chain A, Crystal Structure Of Porcine Pancreatic Pla2 In Complex
With Dbp
Length = 124
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
Query: 24 RYRKYCRVGWSDCHGEKPCDDLDACCKIHDECV-DKKGLTNIK 65
Y YC +G S P D+LD CC+ HD C D K L + K
Sbjct: 24 NYGCYCGLGGSG----TPVDELDRCCETHDNCYRDAKNLDSCK 62
>pdb|1FE5|A Chain A, Sequence And Crystal Structure Of A Basic Phospholipase
A2 From Common Krait (Bungarus Caeruleus) At 2.4
Resolution: Identification And Characterization Of Its
Pharmacological Sites
Length = 118
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 17/67 (25%)
Query: 23 IRYRKYCRVGWSDCHGEKPCDDLDACCKIHDECVDKKGLTNIKCHEKFKRCIKKVQKSGN 82
+ Y YC G S P D+LD CC HD C ++ EK C ++
Sbjct: 21 VNYGCYCGKGGSG----TPVDELDRCCYTHDNCYNEA--------EKIPGCNPNIKT--- 65
Query: 83 VGFSYKC 89
+SY C
Sbjct: 66 --YSYTC 70
>pdb|1LN8|A Chain A, Crystal Structure Of A New Isoform Of Phospholipase A2
From Naja Naja Sagittifera At 1.6 A Resolution
pdb|1MF4|A Chain A, Structure-Based Design Of Potent And Selective
Inhibitors Of Phospholipase A2: Crystal Structure Of
The Complex Formed Between Phosholipase A2 From Naja
Naja Sagittifera And A Designed Peptide Inhibitor At
1.9 A Resolution
pdb|3JQ5|A Chain A, Phospholipase A2 Prevents The Aggregation Of Amyloid
Beta Peptides: Crystal Structure Of The Complex Of
Phospholipase A2 With Octapeptide Fragment Of Amyloid
Beta Peptide, Asp- Ala-Glu-Phe-Arg-His-Asp-Ser At 2 A
Resolution
pdb|3JQL|A Chain A, Crystal Structure Of The Complex Formed Between
Phospholipase A2 And A Hexapeptide Fragment Of Amyloid
Beta Peptide, Lys-Leu-Val-Phe-Phe-Ala At 1.2 A
Resolution
pdb|3NJU|A Chain A, Crystal Structure Of The Complex Of Group I
Phospholipase A2 With 4- Methoxy-Benzoicacid At 1.4a
Resolution
pdb|3JTI|A Chain A, Crystal Structure Of The Complex Formed Between
Phospholipase A2 With Beta-Amyloid Fragment,
Lys-Gly-Ala-Ile-Ile-Gly-Leu-Met At 1.8 A Resolution
pdb|3OSH|A Chain A, Crystal Structure Of The Complex Of Group 1
Phospholipase A2 With Atropin At 1.5 A Resolution
pdb|3Q4Y|A Chain A, Crystal Structure Of Group I Phospholipase A2 At 2.3 A
Resolution In 40% Ethanol Revealed The Critical
Elements Of Hydrophobicity Of The Substrate-Binding
Site
Length = 119
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Query: 25 YRKYCRVGWSDCHGEKPCDDLDACCKIHDECVDK 58
Y YC G S P DDLD CC+ HD C ++
Sbjct: 24 YGCYCGKGGSG----TPVDDLDRCCQTHDNCYNE 53
>pdb|1T37|A Chain A, Design Of Specific Inhibitors Of Phospholipase A2:
Crystal Structure Of The Complex Formed Between Group I
Phospholipase A2 And A Designed Pentapeptide
Leu-Ala-Ile- Tyr-Ser At 2.6a Resolution
pdb|1ZM6|A Chain A, Crystal Structure Of The Complex Formed Beween A Group I
Phospholipase A2 And Designed Penta Peptide
Leu-ala-ile- Tyr-ser At 2.6a Resolution
Length = 119
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Query: 25 YRKYCRVGWSDCHGEKPCDDLDACCKIHDECVDK 58
Y YC G S P DDLD CC+ HD C ++
Sbjct: 24 YGCYCGKGGS----GTPVDDLDRCCQTHDNCYNE 53
>pdb|1DPY|A Chain A, Three-Dimensional Structure Of A Novel Phospholipase A2
From Indian Common Krait At 2.45 A Resolution
Length = 118
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 17/67 (25%)
Query: 23 IRYRKYCRVGWSDCHGEKPCDDLDACCKIHDECVDKKGLTNIKCHEKFKRCIKKVQKSGN 82
+ Y YC G S P D+LD CC HD C ++ EK C ++
Sbjct: 21 VAYGCYCGKGGSG----TPVDELDRCCYTHDHCYNEA--------EKIPGCNPNIKT--- 65
Query: 83 VGFSYKC 89
+SY C
Sbjct: 66 --YSYTC 70
>pdb|2ZP4|A Chain A, Carboxylic Ester Hydrolase, Single Mutant H48n Of Bovine
Pancreatic Pla2 Enzyme
Length = 123
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 28/72 (38%), Gaps = 12/72 (16%)
Query: 24 RYRKYCRVGWSDCHGEKPCDDLDACCKIHDECVDKKGLTNIKCHEKFKRCIKKVQKSGNV 83
Y YC +G S P DDLD CC+ +D C + +K C V
Sbjct: 24 NYGCYCGLGGSG----TPVDDLDRCCQTNDNCYKQA--------KKLDSCKVLVDNPYTN 71
Query: 84 GFSYKCPYDTVV 95
+SY C + +
Sbjct: 72 NYSYSCSNNEIT 83
>pdb|2ZP5|A Chain A, Carboxylic Ester Hydrolase, Single Mutant D49k Of Bovine
Pancreatic Pla2 Enzyme
Length = 123
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 27/72 (37%), Gaps = 12/72 (16%)
Query: 24 RYRKYCRVGWSDCHGEKPCDDLDACCKIHDECVDKKGLTNIKCHEKFKRCIKKVQKSGNV 83
Y YC +G S P DDLD CC+ H C + +K C V
Sbjct: 24 NYGCYCGLGGSG----TPVDDLDRCCQTHKNCYKQA--------KKLDSCKVLVDNPYTN 71
Query: 84 GFSYKCPYDTVV 95
+SY C + +
Sbjct: 72 NYSYSCSNNEIT 83
>pdb|1G2X|A Chain A, Sequence Induced Trimerization Of Krait Pla2: Crystal
Structure Of The Trimeric Form Of Krait Pla2
pdb|1G2X|B Chain B, Sequence Induced Trimerization Of Krait Pla2: Crystal
Structure Of The Trimeric Form Of Krait Pla2
pdb|1G2X|C Chain C, Sequence Induced Trimerization Of Krait Pla2: Crystal
Structure Of The Trimeric Form Of Krait Pla2
pdb|2OSN|A Chain A, An Alternate Description Of A Crystal Structure Of
Phospholipase A2 From Bungarus Caeruleus
Length = 118
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 4/36 (11%)
Query: 23 IRYRKYCRVGWSDCHGEKPCDDLDACCKIHDECVDK 58
I Y YC G S P D LD CC HD C ++
Sbjct: 21 INYGCYCGKGGSG----TPVDKLDRCCYTHDHCYNQ 52
>pdb|1KVW|A Chain A, Carboxylic Ester Hydrolase, Single Mutant H48q Of Bovine
Pancreatic Pla2 Enzyme
Length = 123
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 27/72 (37%), Gaps = 12/72 (16%)
Query: 24 RYRKYCRVGWSDCHGEKPCDDLDACCKIHDECVDKKGLTNIKCHEKFKRCIKKVQKSGNV 83
Y YC +G S P DDLD CC+ D C + +K C V
Sbjct: 24 NYGCYCGLGGSG----TPVDDLDRCCQTQDNCYKQA--------KKLDSCKVLVDNPYTN 71
Query: 84 GFSYKCPYDTVV 95
+SY C + +
Sbjct: 72 NYSYSCSNNEIT 83
>pdb|1G0Z|A Chain A, Specific Mutations In Krait Pla2 Lead To Dimerization Of
Protein Molecules: Crystal Structure Of Krait Pla2 At
2.1 Resolution
pdb|1G0Z|B Chain B, Specific Mutations In Krait Pla2 Lead To Dimerization Of
Protein Molecules: Crystal Structure Of Krait Pla2 At
2.1 Resolution
pdb|1U4J|A Chain A, Crystal Structure Of A Carbohydrate Induced Dimer Of
Group I Phospholipase A2 From Bungarus Caeruleus At 2.1
A Resolution
pdb|1U4J|B Chain B, Crystal Structure Of A Carbohydrate Induced Dimer Of
Group I Phospholipase A2 From Bungarus Caeruleus At 2.1
A Resolution
Length = 118
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 41 PCDDLDACCKIHDECVDKKG 60
P D+LD CC HD C +K
Sbjct: 35 PVDELDRCCYTHDHCYNKAA 54
>pdb|1PO8|A Chain A, Crystal Structure Of A Complex Formed Between Krait
Venom Phospholipase A2 And Heptanoic Acid At 2.7 A
Resolution.
pdb|1TC8|A Chain A, Crystal Structure Of Krait-Venom Phospholipase A2 In A
Complex With A Natural Fatty Acid Tridecanoic Acid
Length = 118
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 16/35 (45%), Gaps = 4/35 (11%)
Query: 23 IRYRKYCRVGWSDCHGEKPCDDLDACCKIHDECVD 57
Y YC G S P DDLD CC HD C +
Sbjct: 21 TNYGCYCGKGGS----GTPVDDLDRCCYTHDHCYN 51
>pdb|1Y6O|A Chain A, Crystal Structure Of Disulfide Engineered Porcine
Pancreatic Phospholipase A2 To Group-X Isozyme In
Complex With Inhibitor Mj33 And Phosphate Ions
pdb|1Y6O|B Chain B, Crystal Structure Of Disulfide Engineered Porcine
Pancreatic Phospholipase A2 To Group-X Isozyme In
Complex With Inhibitor Mj33 And Phosphate Ions
pdb|1Y6P|A Chain A, Crystal Structure Of Disulfide Engineered Porcine
Pancratic Phospholipase A2 To Group-x Isozyme
pdb|1Y6P|B Chain B, Crystal Structure Of Disulfide Engineered Porcine
Pancratic Phospholipase A2 To Group-x Isozyme
Length = 131
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
Query: 24 RYRKYCRVGWSDCHGEKPCDDLDACCKIHDECV-DKKGLTNIK 65
Y YC +G S P D+LD CC+ HD C D K L + K
Sbjct: 24 NYGCYCGLGGSG----TPVDELDRCCETHDCCYRDAKNLDSCK 62
>pdb|1M8T|A Chain A, Structure Of An Acidic Phospholipase A2 From The Venom
Of Ophiophagus Hannah At 2.1 Resolution From A
Hemihedrally Twinned Crystal Form
pdb|1M8T|B Chain B, Structure Of An Acidic Phospholipase A2 From The Venom
Of Ophiophagus Hannah At 2.1 Resolution From A
Hemihedrally Twinned Crystal Form
pdb|1M8T|C Chain C, Structure Of An Acidic Phospholipase A2 From The Venom
Of Ophiophagus Hannah At 2.1 Resolution From A
Hemihedrally Twinned Crystal Form
pdb|1M8T|D Chain D, Structure Of An Acidic Phospholipase A2 From The Venom
Of Ophiophagus Hannah At 2.1 Resolution From A
Hemihedrally Twinned Crystal Form
pdb|1M8T|E Chain E, Structure Of An Acidic Phospholipase A2 From The Venom
Of Ophiophagus Hannah At 2.1 Resolution From A
Hemihedrally Twinned Crystal Form
pdb|1M8T|F Chain F, Structure Of An Acidic Phospholipase A2 From The Venom
Of Ophiophagus Hannah At 2.1 Resolution From A
Hemihedrally Twinned Crystal Form
Length = 119
Score = 26.2 bits (56), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 9/15 (60%), Positives = 12/15 (80%)
Query: 41 PCDDLDACCKIHDEC 55
P D+LD CC++HD C
Sbjct: 37 PVDELDRCCQVHDNC 51
>pdb|1ADJ|A Chain A, Histidyl-Trna Synthetase In Complex With Histidine
pdb|1ADJ|B Chain B, Histidyl-Trna Synthetase In Complex With Histidine
pdb|1ADJ|C Chain C, Histidyl-Trna Synthetase In Complex With Histidine
pdb|1ADJ|D Chain D, Histidyl-Trna Synthetase In Complex With Histidine
pdb|1ADY|A Chain A, Histidyl-Trna Synthetase In Complex With
Histidyl-Adenylate
pdb|1ADY|B Chain B, Histidyl-Trna Synthetase In Complex With
Histidyl-Adenylate
pdb|1ADY|C Chain C, Histidyl-Trna Synthetase In Complex With
Histidyl-Adenylate
pdb|1ADY|D Chain D, Histidyl-Trna Synthetase In Complex With
Histidyl-Adenylate
pdb|1H4V|B Chain B, Histidyl-Trna Synthetase From Thermus Thermophilus (Ligand
Free)
Length = 421
Score = 25.8 bits (55), Expect = 6.0, Method: Composition-based stats.
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 24 RYRKYCRVGWSDCHGEKPCDDLDACCKIHDECVDKKGLTNIK 65
RYR++ +V + E P D +A ++ EC+ + GL +K
Sbjct: 120 RYRQFHQVNYEALGSENPILDAEAVVLLY-ECLKELGLRRLK 160
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.138 0.458
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,401,852
Number of Sequences: 62578
Number of extensions: 126930
Number of successful extensions: 398
Number of sequences better than 100.0: 103
Number of HSP's better than 100.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 310
Number of HSP's gapped (non-prelim): 107
length of query: 119
length of database: 14,973,337
effective HSP length: 81
effective length of query: 38
effective length of database: 9,904,519
effective search space: 376371722
effective search space used: 376371722
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)