BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042007
(844 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3A8R|A Chain A, The Structure Of The N-Terminal Regulatory Domain Of A
Plant Nadph Oxidase
pdb|3A8R|B Chain B, The Structure Of The N-Terminal Regulatory Domain Of A
Plant Nadph Oxidase
Length = 179
Score = 168 bits (426), Expect = 1e-41, Method: Composition-based stats.
Identities = 85/169 (50%), Positives = 115/169 (68%), Gaps = 4/169 (2%)
Query: 76 TASSAARGLQSLRFLDRTVTGKENDAWRSIERRFQQFAVSGRLPKDKFGICVGMGESTEF 135
T SSAA L+ L+F+ V ND W ++E+RF Q V G L + +FG C+GM S EF
Sbjct: 4 TKSSAAVALKGLQFVTAKVG---NDGWAAVEKRFNQLQVDGVLLRSRFGKCIGMDGSDEF 60
Query: 136 SVGVFEALARRRKVNTENGITKEEVRMFWEDMTKKDLDARLQIFFDMCDKNGDGILTEDE 195
+V +F++LAR+R + + +TK+E++ F+E +T + D RL+ FFDM DKN DG LT +E
Sbjct: 61 AVQMFDSLARKRGI-VKQVLTKDELKDFYEQLTDQGFDNRLRTFFDMVDKNADGRLTAEE 119
Query: 196 VREVIVLSASENKLSNLKENSSTYAALIMEKLDPDCKGYIEMWQLEILL 244
V+E+I LSAS NKLS +KE + Y ALIME+LDP GYIEM LE LL
Sbjct: 120 VKEIIALSASANKLSKIKERADEYTALIMEELDPTNLGYIEMEDLEALL 168
>pdb|3A1F|A Chain A, The Crystal Structure Of Nadph Binding Domain Of
Gp91(Phox)
Length = 186
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 89/203 (43%), Gaps = 23/203 (11%)
Query: 648 ILIKGPYGAPAQDYKNYDXXXXXXXXXXATPFISIIKDLLNHIKSHERDTEFLENGFKKG 707
I + GP+G ++D +Y+ TPF SI+K + ++ N
Sbjct: 1 IAVDGPFGTASEDVFSYEVVMLVGAGIGVTPFASILKSVW---------YKYCNNATNLK 51
Query: 708 PERAYFYWVTREQGSFEWFKGVMD----DIADHDDKNVIEMHNYLTSVYEEGDARSALIA 763
++ YFYW+ R+ +FEWF ++ + + ++ + + YLT ++E A +
Sbjct: 52 LKKIYFYWLCRDTHAFEWFADLLQLLESQMQERNNAGFLSYNIYLTG-WDESQANHFAV- 109
Query: 764 MVQKLQHAKNGVDIVSESRIKTHFARPNWRKVFGQLATDHESSRIGVFYCGSAXXXXXXX 823
H D+++ + KT + RPNW F +A+ H ++RIGVF CG
Sbjct: 110 ------HHDEEKDVITGLKQKTLYGRPNWDNEFKTIASQHPNTRIGVFLCGPEALAETLS 163
Query: 824 XXXXXFSLESP--TRFDFHKENF 844
S P F F+KENF
Sbjct: 164 KQSISNSESGPRGVHFIFNKENF 186
>pdb|3Q5I|A Chain A, Crystal Structure Of Pbanka_031420
Length = 504
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 44/96 (45%), Gaps = 2/96 (2%)
Query: 142 ALARRRKVNTENGITKEEVRMFWEDMTKKDLDARLQIFFDMCDKNGDGILTEDEVREVI- 200
AL+ RK + + + +T + L F DKNGDG L + E+ E
Sbjct: 323 ALSNMRKFEGSQKLAQAAILFIGSKLTTLEERKELTDIFKKLDKNGDGQLDKKELIEGYN 382
Query: 201 VLSASENKLSNLKENSSTYAALIMEKLDPDCKGYIE 236
VL +N+L LK N I++++D D GYIE
Sbjct: 383 VLRNFKNELGELK-NVEEEVDNILKEVDFDKNGYIE 417
>pdb|2F43|A Chain A, Rat Liver F1-atpase
Length = 510
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 46/99 (46%), Gaps = 17/99 (17%)
Query: 25 MVDVPINDDTSGRVV--------SKPPTAPSLRRNASTAIRRSGMLGTNSIRNPAKMDRT 76
+VDVP+ D+ GRVV K P +RR ++ G++ S+R P +
Sbjct: 94 IVDVPVGDELLGRVVDALGNAIDGKGPVGSKIRRR--VGLKAPGIIPRISVREPMQTGIK 151
Query: 77 ASSA----ARGLQSLRFLDRTVTGKENDAWRSI--ERRF 109
A + RG + L DR TGK + A +I ++RF
Sbjct: 152 AVDSLVPIGRGQRELIIGDRQ-TGKTSIAIDTIINQKRF 189
>pdb|1MAB|A Chain A, Rat Liver F1-Atpase
Length = 510
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 46/99 (46%), Gaps = 17/99 (17%)
Query: 25 MVDVPINDDTSGRVV--------SKPPTAPSLRRNASTAIRRSGMLGTNSIRNPAKMDRT 76
+VDVP+ D+ GRVV K P +RR ++ G++ S+R P +
Sbjct: 94 IVDVPVGDELLGRVVDALGNAIDGKGPVGSKIRRR--VGLKAPGIIPRISVREPMQTGIK 151
Query: 77 ASSA----ARGLQSLRFLDRTVTGKENDAWRSI--ERRF 109
A + RG + L DR TGK + A +I ++RF
Sbjct: 152 AVDSLVPIGRGQRELIIGDRQ-TGKTSIAIDTIINQKRF 189
>pdb|1NYA|A Chain A, Nmr Solution Structure Of Calerythrin, An Ef-hand Calcium-
Binding Protein
Length = 176
Score = 31.6 bits (70), Expect = 2.0, Method: Composition-based stats.
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 8/66 (12%)
Query: 138 GVFEALARRRKVNTENGITKEEVRMFWEDMTKKDLDAR--------LQIFFDMCDKNGDG 189
G+F+ LA+ V ++ +T+E+ E++ + +A ++ MCDKN DG
Sbjct: 58 GLFDYLAKEAGVGSDGSLTEEQFIRVTENLIFEQGEASFNRVLGPVVKGIVGMCDKNADG 117
Query: 190 ILTEDE 195
+ DE
Sbjct: 118 QINADE 123
>pdb|2G9B|A Chain A, Nmr Solution Structure Of Ca2+-Loaded Calbindin D28k
pdb|2F33|A Chain A, Nmr Solution Structure Of Ca2+-Loaded Calbindin D28k
Length = 263
Score = 31.6 bits (70), Expect = 2.1, Method: Composition-based stats.
Identities = 37/141 (26%), Positives = 64/141 (45%), Gaps = 17/141 (12%)
Query: 141 EALARRRKVNTENG--ITKEEVRMFWEDMTKKDL----DARLQIFFDMC----DKNGDGI 190
E + RK +T++ I EE++ F +D+ +K D +L + D+ D N DG
Sbjct: 104 EFMKTWRKYDTDHSGFIETEELKNFLKDLLEKANKTVDDTKLAEYTDLMLKLFDSNNDGK 163
Query: 191 LTEDEVREVIVLSASEN---KLSNLKENSSTYAALIMEKLDPDCKGYIEMWQLEILLRGM 247
L E+ + L EN K +K + E D D GYI+ +L+ LL+ +
Sbjct: 164 LELTEMARL--LPVQENFLLKFQGIKMCGKEFNK-AFELYDQDGNGYIDENELDALLKDL 220
Query: 248 VNEEGPKMN-NRTSTLTKAMI 267
+ +++ N ST K ++
Sbjct: 221 CEKNKQELDINNISTYKKNIM 241
>pdb|1JFJ|A Chain A, Nmr Solution Structure Of An Ef-Hand Calcium Binding
Protein From Entamoeba Histolytica
pdb|1JFK|A Chain A, Minimum Energy Representative Structure Of A Calcium Bound
Ef-hand Protein From Entamoeba Histolytica
Length = 134
Score = 30.8 bits (68), Expect = 2.9, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 28/55 (50%)
Query: 141 EALARRRKVNTENGITKEEVRMFWEDMTKKDLDARLQIFFDMCDKNGDGILTEDE 195
EAL + VN + ++ EEV+ F + LQ+ F D +G+G + ++E
Sbjct: 3 EALFKEIDVNGDGAVSYEEVKAFVSKKRAIKNEQLLQLIFKSIDADGNGEIDQNE 57
>pdb|2NXQ|A Chain A, Crystal Structure Of Calcium Binding Protein 1 From
Entamoeba Histolytica: A Novel Arrangement Of Ef Hand
Motifs
pdb|2NXQ|B Chain B, Crystal Structure Of Calcium Binding Protein 1 From
Entamoeba Histolytica: A Novel Arrangement Of Ef Hand
Motifs
pdb|3PX1|A Chain A, Structure Of Calcium Binding Protein-1 From Entamoeba
Histolytica In Complex With Strontium
pdb|3PX1|B Chain B, Structure Of Calcium Binding Protein-1 From Entamoeba
Histolytica In Complex With Strontium
pdb|3QJK|A Chain A, Structure Of Calcium Binding Protein-1 From Entamoeba
Histolytica In Complex With Lead
pdb|3QJK|B Chain B, Structure Of Calcium Binding Protein-1 From Entamoeba
Histolytica In Complex With Lead
pdb|3ULG|A Chain A, Crystal Structure Of Calcium-Binding Protein-1 From
Entamoeba Histolytica In Complex With Barium
pdb|3ULG|B Chain B, Crystal Structure Of Calcium-Binding Protein-1 From
Entamoeba Histolytica In Complex With Barium
Length = 134
Score = 30.8 bits (68), Expect = 2.9, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 28/55 (50%)
Query: 141 EALARRRKVNTENGITKEEVRMFWEDMTKKDLDARLQIFFDMCDKNGDGILTEDE 195
EAL + VN + ++ EEV+ F + LQ+ F D +G+G + ++E
Sbjct: 3 EALFKEIDVNGDGAVSYEEVKAFVSKKRAIKNEQLLQLIFKSIDADGNGEIDQNE 57
>pdb|3LI6|A Chain A, Crystal Structure And Trimer-Monomer Transition Of
N-Terminal Domain Of Ehcabp1 From Entamoeba Histolytica
pdb|3LI6|D Chain D, Crystal Structure And Trimer-Monomer Transition Of
N-Terminal Domain Of Ehcabp1 From Entamoeba Histolytica
pdb|3LI6|G Chain G, Crystal Structure And Trimer-Monomer Transition Of
N-Terminal Domain Of Ehcabp1 From Entamoeba Histolytica
pdb|3LI6|J Chain J, Crystal Structure And Trimer-Monomer Transition Of
N-Terminal Domain Of Ehcabp1 From Entamoeba Histolytica
Length = 66
Score = 30.8 bits (68), Expect = 3.0, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 28/55 (50%)
Query: 141 EALARRRKVNTENGITKEEVRMFWEDMTKKDLDARLQIFFDMCDKNGDGILTEDE 195
EAL + VN + ++ EEV+ F + LQ+ F D +G+G + ++E
Sbjct: 3 EALFKEIDVNGDGAVSYEEVKAFVSKKRAIKNEQLLQLIFKSIDADGNGEIDQNE 57
>pdb|3TT0|A Chain A, Co-Structure Of Fibroblast Growth Factor Receptor 1 Kinase
Domain With
3-(2,6-Dichloro-3,
5-Dimethoxy-Phenyl)-1-{6-[4-(4-Ethyl-Piperazin-1-
Yl)-Phenylamino]-Pyrimidin-4-Yl}-1-Methyl-Urea (Bgj398)
pdb|3TT0|B Chain B, Co-Structure Of Fibroblast Growth Factor Receptor 1 Kinase
Domain With
3-(2,6-Dichloro-3,
5-Dimethoxy-Phenyl)-1-{6-[4-(4-Ethyl-Piperazin-1-
Yl)-Phenylamino]-Pyrimidin-4-Yl}-1-Methyl-Urea (Bgj398)
Length = 382
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 45/100 (45%), Gaps = 9/100 (9%)
Query: 117 RLPKDKFGICVGMGESTEFSVGVFEALARRRKVNTENGITKEEVRMFWEDMTKKDLDARL 176
LP+D+ + +GE V + EA+ + + N +TK V+M D T+KDL +
Sbjct: 65 ELPRDRLVLGKPLGEGAFGQVVLAEAIGLDK--DKPNRVTKVAVKMLKSDATEKDLSDLI 122
Query: 177 Q--IFFDMCDKNGD-----GILTEDEVREVIVLSASENKL 209
M K+ + G T+D VIV AS+ L
Sbjct: 123 SEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNL 162
>pdb|3RHX|B Chain B, Crystal Structure Of The Catalytic Domain Of Fgfr1 Kinase
In Complex With Arq 069
pdb|3RHX|A Chain A, Crystal Structure Of The Catalytic Domain Of Fgfr1 Kinase
In Complex With Arq 069
Length = 306
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 9/99 (9%)
Query: 118 LPKDKFGICVGMGESTEFSVGVFEALARRRKVNTENGITKEEVRMFWEDMTKKDLDARLQ 177
LP+D+ + +GE V + EA+ + + N +TK V+M D T+KDL +
Sbjct: 14 LPRDRLVLGKPLGEGAFGQVVLAEAIGLDK--DKPNRVTKVAVKMLKSDATEKDLSDLIS 71
Query: 178 --IFFDMCDKNGD-----GILTEDEVREVIVLSASENKL 209
M K+ + G T+D VIV AS+ L
Sbjct: 72 EMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNL 110
>pdb|1FGK|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of
Fibroblast Growth Factor Receptor 1
pdb|1FGK|B Chain B, Crystal Structure Of The Tyrosine Kinase Domain Of
Fibroblast Growth Factor Receptor 1
pdb|1FGI|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of
Fibroblast Growth Factor Receptor 1 In Complex With
Su5402 Inhibitor
pdb|1FGI|B Chain B, Crystal Structure Of The Tyrosine Kinase Domain Of
Fibroblast Growth Factor Receptor 1 In Complex With
Su5402 Inhibitor
pdb|1AGW|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of
Fibroblast Growth Factor Receptor 1 In Complex With
Su4984 Inhibitor
pdb|1AGW|B Chain B, Crystal Structure Of The Tyrosine Kinase Domain Of
Fibroblast Growth Factor Receptor 1 In Complex With
Su4984 Inhibitor
pdb|2FGI|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of Fgf
Receptor 1 In Complex With Inhibitor Pd173074
pdb|2FGI|B Chain B, Crystal Structure Of The Tyrosine Kinase Domain Of Fgf
Receptor 1 In Complex With Inhibitor Pd173074
Length = 310
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 9/99 (9%)
Query: 118 LPKDKFGICVGMGESTEFSVGVFEALARRRKVNTENGITKEEVRMFWEDMTKKDLDARLQ 177
LP+D+ + +GE V + EA+ + + N +TK V+M D T+KDL +
Sbjct: 18 LPRDRLVLGKPLGEGAFGQVVLAEAIGLDK--DKPNRVTKVAVKMLKSDATEKDLSDLIS 75
Query: 178 --IFFDMCDKNGD-----GILTEDEVREVIVLSASENKL 209
M K+ + G T+D VIV AS+ L
Sbjct: 76 EMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNL 114
>pdb|3JS2|A Chain A, Crystal Structure Of Minimal Kinase Domain Of Fibroblast
Growth Factor Receptor 1 In Complex With 5-(2-Thienyl)
Nicotinic Acid
pdb|3JS2|B Chain B, Crystal Structure Of Minimal Kinase Domain Of Fibroblast
Growth Factor Receptor 1 In Complex With 5-(2-Thienyl)
Nicotinic Acid
pdb|3KY2|A Chain A, Crystal Structure Of Fibroblast Growth Factor Receptor 1
Kinase Domain
pdb|3KY2|B Chain B, Crystal Structure Of Fibroblast Growth Factor Receptor 1
Kinase Domain
Length = 317
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 9/99 (9%)
Query: 118 LPKDKFGICVGMGESTEFSVGVFEALARRRKVNTENGITKEEVRMFWEDMTKKDLDARLQ 177
LP+D+ + +GE V + EA+ + + N +TK V+M D T+KDL +
Sbjct: 25 LPRDRLVLGKPLGEGAFGQVVLAEAIGLDK--DKPNRVTKVAVKMLKSDATEKDLSDLIS 82
Query: 178 --IFFDMCDKNGD-----GILTEDEVREVIVLSASENKL 209
M K+ + G T+D VIV AS+ L
Sbjct: 83 EMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNL 121
>pdb|4F63|A Chain A, Crystal Structure Of Human Fibroblast Growth Factor
Receptor 1 Kinase Domain In Complex With Compound 1
pdb|4F63|B Chain B, Crystal Structure Of Human Fibroblast Growth Factor
Receptor 1 Kinase Domain In Complex With Compound 1
pdb|4F64|A Chain A, Crystal Structure Of Human Fibroblast Growth Factor
Receptor 1 Kinase Domain In Complex With Compound 6
pdb|4F64|B Chain B, Crystal Structure Of Human Fibroblast Growth Factor
Receptor 1 Kinase Domain In Complex With Compound 6
pdb|4F65|A Chain A, Crystal Structure Of Human Fibroblast Growth Factor
Receptor 1 Kinase Domain In Complex With Compound 8
pdb|4F65|B Chain B, Crystal Structure Of Human Fibroblast Growth Factor
Receptor 1 Kinase Domain In Complex With Compound 8
Length = 309
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 9/99 (9%)
Query: 118 LPKDKFGICVGMGESTEFSVGVFEALARRRKVNTENGITKEEVRMFWEDMTKKDLDARLQ 177
LP+D+ + +GE V + EA+ + + N +TK V+M D T+KDL +
Sbjct: 17 LPRDRLVLGKPLGEGAFGQVVLAEAIGLDK--DKPNRVTKVAVKMLKSDATEKDLSDLIS 74
Query: 178 --IFFDMCDKNGD-----GILTEDEVREVIVLSASENKL 209
M K+ + G T+D VIV AS+ L
Sbjct: 75 EMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNL 113
>pdb|3GQL|A Chain A, Crystal Structure Of Activated Receptor Tyrosine Kinase In
Complex With Substrates
pdb|3GQL|B Chain B, Crystal Structure Of Activated Receptor Tyrosine Kinase In
Complex With Substrates
pdb|3GQL|C Chain C, Crystal Structure Of Activated Receptor Tyrosine Kinase In
Complex With Substrates
Length = 326
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 9/99 (9%)
Query: 118 LPKDKFGICVGMGESTEFSVGVFEALARRRKVNTENGITKEEVRMFWEDMTKKDLDARLQ 177
LP+D+ + +GE V + EA+ + + N +TK V+M D T+KDL +
Sbjct: 25 LPRDRLVLGKPLGEGAFGQVVLAEAIGLDK--DKPNRVTKVAVKMLKSDATEKDLSDLIS 82
Query: 178 --IFFDMCDKNGD-----GILTEDEVREVIVLSASENKL 209
M K+ + G T+D VIV AS+ L
Sbjct: 83 EMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNL 121
>pdb|3C4F|A Chain A, Fgfr Tyrosine Kinase Domain In Complex With 3-(3-
Methoxybenzyl)-7-Azaindole
pdb|3C4F|B Chain B, Fgfr Tyrosine Kinase Domain In Complex With 3-(3-
Methoxybenzyl)-7-Azaindole
Length = 302
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 9/99 (9%)
Query: 118 LPKDKFGICVGMGESTEFSVGVFEALARRRKVNTENGITKEEVRMFWEDMTKKDLDARLQ 177
LP+D+ + +GE V + EA+ + + N +TK V+M D T+KDL +
Sbjct: 10 LPRDRLVLGKPLGEGAFGQVVLAEAIGLDK--DKPNRVTKVAVKMLKSDATEKDLSDLIS 67
Query: 178 --IFFDMCDKNGD-----GILTEDEVREVIVLSASENKL 209
M K+ + G T+D VIV AS+ L
Sbjct: 68 EMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNL 106
>pdb|3KXX|A Chain A, Structure Of The Mutant Fibroblast Growth Factor Receptor
1
pdb|3KXX|B Chain B, Structure Of The Mutant Fibroblast Growth Factor Receptor
1
pdb|3KXX|C Chain C, Structure Of The Mutant Fibroblast Growth Factor Receptor
1
pdb|3KXX|D Chain D, Structure Of The Mutant Fibroblast Growth Factor Receptor
1
Length = 317
Score = 30.4 bits (67), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 9/99 (9%)
Query: 118 LPKDKFGICVGMGESTEFSVGVFEALARRRKVNTENGITKEEVRMFWEDMTKKDLDARLQ 177
LP+D+ + +GE V + EA+ + + N +TK V+M D T+KDL +
Sbjct: 25 LPRDRLVLGKPLGEGAFGQVVLAEAIGLDK--DKPNRVTKVAVKMLKSDATEKDLSDLIS 82
Query: 178 --IFFDMCDKNGD-----GILTEDEVREVIVLSASENKL 209
M K+ + G T+D VIV AS+ L
Sbjct: 83 EMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNL 121
>pdb|3GQI|A Chain A, Crystal Structure Of Activated Receptor Tyrosine Kinase In
Complex With Substrates
Length = 326
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 9/99 (9%)
Query: 118 LPKDKFGICVGMGESTEFSVGVFEALARRRKVNTENGITKEEVRMFWEDMTKKDLDARLQ 177
LP+D+ + +GE V + EA+ + + N +TK V+M D T+KDL +
Sbjct: 25 LPRDRLVLGKPLGEGAFGQVVLAEAIGLDK--DKPNRVTKVAVKMLKSDATEKDLSDLIS 82
Query: 178 --IFFDMCDKNGD-----GILTEDEVREVIVLSASENKL 209
M K+ + G T+D VIV AS+ L
Sbjct: 83 EMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNL 121
>pdb|2JNF|A Chain A, Solution Structure Of Fly Troponin C, Isoform F1
Length = 158
Score = 30.0 bits (66), Expect = 5.7, Method: Composition-based stats.
Identities = 33/152 (21%), Positives = 67/152 (44%), Gaps = 28/152 (18%)
Query: 107 RRFQQFAVSGRLPKDKFGICVGMGESTEFSVGVFEALARRRKVNTE-----NGITKEE-- 159
R F+ SGR+ D+ GI + + +G+ + + R++ E NG +
Sbjct: 20 RDFETPEGSGRVSTDQIGIILEV-------LGIQQTKSTIRQLIDEFDPFGNGDIDFDSF 72
Query: 160 ----VRMFWEDMTKKDLDARLQIFFDMCDKNGDGILTEDEVREVIVLSASENKLSNLKEN 215
R E++ + + L+ F + DK G+G ++ D +RE+ L+ L E
Sbjct: 73 KIIGARFLGEEVNPEQMQQELREAFRLYDKEGNGYISTDVMREI---------LAELDET 123
Query: 216 -SSTYAALIMEKLDPDCKGYIEMWQLEILLRG 246
SS +++++D D G ++ + ++ G
Sbjct: 124 LSSEDLDAMIDEIDADGSGTVDFEEFMGVMTG 155
>pdb|3I5G|C Chain C, Crystal Structure Of Rigor-Like Squid Myosin S1
pdb|3I5H|C Chain C, The Crystal Structure Of Rigor Like Squid Myosin S1 In The
Absence Of Nucleotide
pdb|3I5I|C Chain C, The Crystal Structure Of Squid Myosin S1 In The Presence
Of So4 2-
pdb|3I5F|C Chain C, Crystal Structure Of Squid Mg.Adp Myosin S1
Length = 159
Score = 29.3 bits (64), Expect = 9.9, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 152 ENGITKEEVRMFWEDMTKKDLDARLQIF---FDMCDKNGDGILTEDEVREVI 200
E EE+ +E+M+ KD F F D+ G G+++ E+R V+
Sbjct: 60 EKAYKLEEILPIYEEMSSKDTGTAADEFMEAFKTFDREGQGLISSAEIRNVL 111
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,321,948
Number of Sequences: 62578
Number of extensions: 987476
Number of successful extensions: 2232
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 2210
Number of HSP's gapped (non-prelim): 52
length of query: 844
length of database: 14,973,337
effective HSP length: 107
effective length of query: 737
effective length of database: 8,277,491
effective search space: 6100510867
effective search space used: 6100510867
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (26.2 bits)