Query 042007
Match_columns 844
No_of_seqs 561 out of 4126
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 13:02:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042007.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042007hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0039 Ferric reductase, NADH 100.0 3.4E-99 7E-104 887.0 43.7 640 152-844 2-646 (646)
2 PLN02631 ferric-chelate reduct 100.0 1.7E-60 3.7E-65 554.5 32.2 366 297-753 110-492 (699)
3 PLN02844 oxidoreductase/ferric 100.0 3.4E-59 7.4E-64 546.3 37.1 437 327-844 153-720 (722)
4 PLN02292 ferric-chelate reduct 100.0 1.7E-59 3.6E-64 547.5 31.6 339 328-753 168-512 (702)
5 COG4097 Predicted ferric reduc 100.0 2.4E-41 5.2E-46 352.2 23.3 378 335-844 46-435 (438)
6 cd06186 NOX_Duox_like_FAD_NADP 100.0 2.8E-33 6.1E-38 289.3 23.3 205 535-844 2-210 (210)
7 cd06216 FNR_iron_sulfur_bindin 100.0 1.2E-27 2.5E-32 253.2 23.5 233 518-844 2-243 (243)
8 cd06195 FNR1 Ferredoxin-NADP+ 100.0 1.4E-27 3.1E-32 252.2 22.5 228 534-844 2-241 (241)
9 cd06189 flavin_oxioreductase N 100.0 1.7E-27 3.8E-32 248.6 22.1 220 533-844 2-224 (224)
10 cd06198 FNR_like_3 NAD(P) bind 100.0 2.8E-27 6.1E-32 245.7 21.9 207 542-844 7-215 (216)
11 cd06197 FNR_like_2 FAD/NAD(P) 100.0 2.7E-27 5.9E-32 246.0 21.6 191 537-844 3-219 (220)
12 PRK08051 fre FMN reductase; Va 100.0 3.8E-27 8.2E-32 247.3 22.2 223 530-844 3-229 (232)
13 cd06184 flavohem_like_fad_nad_ 100.0 6.9E-27 1.5E-31 247.9 23.6 230 530-844 7-243 (247)
14 cd06212 monooxygenase_like The 100.0 7.3E-27 1.6E-31 245.3 23.3 225 531-844 2-231 (232)
15 cd06215 FNR_iron_sulfur_bindin 100.0 5.4E-27 1.2E-31 246.1 21.8 225 533-844 2-231 (231)
16 cd06191 FNR_iron_sulfur_bindin 100.0 6.6E-27 1.4E-31 245.5 21.7 226 533-844 2-231 (231)
17 cd06210 MMO_FAD_NAD_binding Me 99.9 1.3E-26 2.8E-31 244.1 23.5 225 530-844 2-235 (236)
18 cd06213 oxygenase_e_transfer_s 99.9 1.2E-26 2.6E-31 242.8 23.0 222 531-844 2-227 (227)
19 cd06217 FNR_iron_sulfur_bindin 99.9 1.4E-26 3E-31 243.6 22.1 229 529-844 1-235 (235)
20 cd06211 phenol_2-monooxygenase 99.9 1.8E-26 3.9E-31 243.3 22.9 227 530-844 7-238 (238)
21 cd06190 T4MO_e_transfer_like T 99.9 2.5E-26 5.5E-31 241.2 23.9 227 535-844 2-231 (232)
22 cd06209 BenDO_FAD_NAD Benzoate 99.9 2.6E-26 5.6E-31 240.5 23.3 221 531-844 3-227 (228)
23 cd06194 FNR_N-term_Iron_sulfur 99.9 1.5E-26 3.3E-31 241.2 21.4 216 535-844 2-221 (222)
24 cd06187 O2ase_reductase_like T 99.9 2.7E-26 5.8E-31 239.6 22.0 220 535-844 2-224 (224)
25 cd06188 NADH_quinone_reductase 99.9 2E-26 4.3E-31 249.1 21.7 230 530-844 10-283 (283)
26 cd06214 PA_degradation_oxidore 99.9 6.4E-26 1.4E-30 239.5 24.3 230 530-844 2-240 (241)
27 cd00322 FNR_like Ferredoxin re 99.9 4.2E-26 9.2E-31 237.6 21.3 209 537-830 3-214 (223)
28 TIGR02160 PA_CoA_Oxy5 phenylac 99.9 8.2E-26 1.8E-30 252.0 23.8 230 530-844 2-241 (352)
29 cd06196 FNR_like_1 Ferredoxin 99.9 6.9E-26 1.5E-30 235.6 21.6 205 531-831 2-210 (218)
30 PRK10684 HCP oxidoreductase, N 99.9 1.1E-25 2.4E-30 248.8 22.5 225 530-844 10-237 (332)
31 PRK07609 CDP-6-deoxy-delta-3,4 99.9 7.6E-26 1.7E-30 251.0 21.3 226 529-844 102-332 (339)
32 PRK11872 antC anthranilate dio 99.9 2E-25 4.4E-30 247.1 22.1 225 528-844 105-335 (340)
33 PRK13289 bifunctional nitric o 99.9 4E-25 8.8E-30 250.8 23.2 232 529-844 154-392 (399)
34 cd06221 sulfite_reductase_like 99.9 6.6E-25 1.4E-29 233.2 21.3 207 535-831 2-214 (253)
35 PRK10926 ferredoxin-NADP reduc 99.9 1.1E-24 2.5E-29 230.6 22.8 216 529-828 4-227 (248)
36 cd06183 cyt_b5_reduct_like Cyt 99.9 1.5E-24 3.3E-29 227.9 23.4 217 533-831 2-226 (234)
37 cd06218 DHOD_e_trans FAD/NAD b 99.9 1.6E-24 3.4E-29 229.3 22.7 209 535-844 2-213 (246)
38 PRK08345 cytochrome-c3 hydroge 99.9 2.6E-24 5.6E-29 232.9 24.4 225 529-831 5-236 (289)
39 PRK00054 dihydroorotate dehydr 99.9 2.6E-24 5.6E-29 228.4 23.5 149 529-733 4-152 (250)
40 PRK05713 hypothetical protein; 99.9 2.9E-24 6.2E-29 235.3 20.9 212 530-844 92-308 (312)
41 COG1018 Hmp Flavodoxin reducta 99.9 1.1E-23 2.3E-28 223.0 23.1 221 529-844 5-230 (266)
42 cd06185 PDR_like Phthalate dio 99.9 6.7E-24 1.5E-28 219.5 20.8 202 536-844 2-210 (211)
43 cd06220 DHOD_e_trans_like2 FAD 99.9 9.1E-24 2E-28 221.9 21.9 200 532-844 1-200 (233)
44 cd06192 DHOD_e_trans_like FAD/ 99.9 1.1E-23 2.3E-28 222.8 22.6 144 535-733 2-147 (243)
45 PF08030 NAD_binding_6: Ferric 99.9 7.1E-25 1.5E-29 215.6 12.6 153 664-827 1-156 (156)
46 PLN03116 ferredoxin--NADP+ red 99.9 1.5E-23 3.2E-28 228.8 24.1 221 530-829 25-281 (307)
47 PRK08221 anaerobic sulfite red 99.9 1.1E-23 2.5E-28 224.7 22.3 208 530-831 8-216 (263)
48 PRK05464 Na(+)-translocating N 99.9 1.3E-23 2.9E-28 238.2 22.6 230 530-844 134-407 (409)
49 cd06219 DHOD_e_trans_like1 FAD 99.9 2.2E-23 4.8E-28 220.9 22.6 199 533-830 2-203 (248)
50 PTZ00274 cytochrome b5 reducta 99.9 2.8E-23 6.1E-28 226.5 23.0 224 527-825 50-281 (325)
51 cd06208 CYPOR_like_FNR These f 99.9 6.2E-23 1.3E-27 222.0 24.7 221 530-829 9-261 (286)
52 TIGR02911 sulfite_red_B sulfit 99.9 6.3E-23 1.4E-27 218.7 22.9 207 531-831 7-214 (261)
53 TIGR01941 nqrF NADH:ubiquinone 99.9 3.7E-23 8.1E-28 234.3 21.1 230 530-844 130-403 (405)
54 PRK06222 ferredoxin-NADP(+) re 99.9 7.5E-23 1.6E-27 220.5 22.4 199 533-830 3-204 (281)
55 PRK05802 hypothetical protein; 99.9 1.7E-22 3.7E-27 220.6 23.6 150 530-734 65-223 (320)
56 PTZ00319 NADH-cytochrome B5 re 99.9 2.4E-22 5.2E-27 218.3 21.6 220 528-830 32-291 (300)
57 cd06182 CYPOR_like NADPH cytoc 99.9 4.2E-22 9.1E-27 212.9 22.2 206 541-829 14-237 (267)
58 cd06200 SiR_like1 Cytochrome p 99.9 5.8E-22 1.3E-26 209.5 22.3 150 543-750 17-176 (245)
59 PLN03115 ferredoxin--NADP(+) r 99.9 7.2E-22 1.6E-26 217.7 23.3 221 532-831 93-343 (367)
60 TIGR03224 benzo_boxA benzoyl-C 99.9 5.9E-21 1.3E-25 215.5 23.9 218 530-830 143-386 (411)
61 cd06201 SiR_like2 Cytochrome p 99.9 6.7E-21 1.5E-25 206.1 23.2 209 529-830 45-268 (289)
62 KOG0534 NADH-cytochrome b-5 re 99.9 5.8E-21 1.3E-25 200.4 21.5 222 529-832 51-279 (286)
63 COG0543 UbiB 2-polyprenylpheno 99.9 1E-20 2.2E-25 200.3 23.0 204 531-831 9-216 (252)
64 PLN02252 nitrate reductase [NA 99.9 8.1E-21 1.8E-25 230.1 22.4 224 527-832 632-881 (888)
65 PF08022 FAD_binding_8: FAD-bi 99.8 1.3E-22 2.9E-27 185.1 -1.7 100 530-657 2-104 (105)
66 PRK12779 putative bifunctional 99.8 2.7E-19 5.8E-24 219.9 22.1 212 529-831 648-871 (944)
67 PRK12778 putative bifunctional 99.8 4E-19 8.7E-24 216.7 22.4 199 533-830 3-204 (752)
68 cd06193 siderophore_interactin 99.8 7.5E-19 1.6E-23 184.8 21.2 134 534-723 1-160 (235)
69 PTZ00306 NADH-dependent fumara 99.8 1.8E-18 4E-23 218.5 23.5 223 528-831 913-1153(1167)
70 COG5126 FRQ1 Ca2+-binding prot 99.8 1.2E-18 2.6E-23 167.1 15.7 139 97-248 14-158 (160)
71 KOG0034 Ca2+/calmodulin-depend 99.8 8.6E-19 1.9E-23 174.1 14.2 146 98-249 28-178 (187)
72 KOG0044 Ca2+ sensor (EF-Hand s 99.8 1.9E-18 4E-23 171.7 14.4 159 82-248 12-177 (193)
73 PRK12775 putative trifunctiona 99.8 1.1E-17 2.4E-22 207.5 22.5 199 533-831 3-205 (1006)
74 PF08414 NADPH_Ox: Respiratory 99.7 9.8E-18 2.1E-22 144.2 5.3 99 72-173 1-99 (100)
75 KOG0027 Calmodulin and related 99.7 1.8E-16 3.9E-21 154.9 14.8 134 101-246 6-149 (151)
76 cd06206 bifunctional_CYPOR The 99.6 2.7E-15 5.9E-20 169.0 15.2 190 558-831 148-352 (384)
77 cd06199 SiR Cytochrome p450- l 99.6 2.6E-15 5.6E-20 167.5 14.7 188 554-830 129-331 (360)
78 cd06207 CyPoR_like NADPH cytoc 99.6 6.8E-15 1.5E-19 165.7 16.9 179 572-831 161-354 (382)
79 COG2871 NqrF Na+-transporting 99.6 9.1E-15 2E-19 148.2 15.1 230 530-831 135-398 (410)
80 KOG0028 Ca2+-binding protein ( 99.6 3.4E-14 7.3E-19 132.9 14.0 136 100-247 30-171 (172)
81 TIGR01931 cysJ sulfite reducta 99.6 1.3E-14 2.8E-19 171.5 14.4 126 555-736 367-506 (597)
82 PTZ00183 centrin; Provisional 99.6 5.3E-14 1.1E-18 138.2 16.3 138 99-248 13-156 (158)
83 PTZ00184 calmodulin; Provision 99.5 1.5E-13 3.3E-18 133.3 15.4 135 99-245 7-147 (149)
84 KOG0038 Ca2+-binding kinase in 99.5 7.5E-14 1.6E-18 127.7 11.4 152 84-250 16-181 (189)
85 cd06203 methionine_synthase_re 99.5 3.6E-13 7.8E-18 152.3 18.3 136 572-751 171-316 (398)
86 cd06204 CYPOR NADPH cytochrome 99.5 5.6E-13 1.2E-17 151.5 17.4 195 572-829 175-386 (416)
87 PRK06214 sulfite reductase; Pr 99.5 1E-12 2.3E-17 151.4 18.3 126 572-750 313-451 (530)
88 PF01794 Ferric_reduct: Ferric 99.5 1.2E-13 2.6E-18 130.3 8.1 121 334-487 2-124 (125)
89 cd06202 Nitric_oxide_synthase 99.4 1.5E-12 3.2E-17 147.6 17.6 181 573-829 175-372 (406)
90 PF00175 NAD_binding_1: Oxidor 99.4 9.7E-13 2.1E-17 120.9 10.6 107 669-824 1-109 (109)
91 PRK10953 cysJ sulfite reductas 99.4 4.6E-12 1E-16 149.2 15.8 126 555-736 370-509 (600)
92 KOG0031 Myosin regulatory ligh 99.4 3.2E-11 7E-16 112.2 16.5 131 99-245 28-164 (171)
93 KOG0036 Predicted mitochondria 99.2 2.6E-10 5.6E-15 121.9 13.5 130 103-249 14-149 (463)
94 PF00970 FAD_binding_6: Oxidor 99.2 6.5E-11 1.4E-15 106.9 7.3 91 531-657 1-97 (99)
95 PF13499 EF-hand_7: EF-hand do 99.1 1.5E-10 3.3E-15 96.2 7.7 66 175-244 1-66 (66)
96 PRK06567 putative bifunctional 99.0 1.2E-09 2.5E-14 131.8 13.7 117 531-687 792-913 (1028)
97 KOG0027 Calmodulin and related 99.0 2.6E-09 5.7E-14 104.4 12.0 107 135-248 9-115 (151)
98 KOG0037 Ca2+-binding protein, 99.0 5.5E-09 1.2E-13 103.7 13.8 125 105-247 59-189 (221)
99 KOG3378 Globins and related he 99.0 6.5E-09 1.4E-13 105.4 13.6 124 529-689 149-287 (385)
100 KOG4223 Reticulocalbin, calume 98.8 1.4E-08 3E-13 106.5 10.9 132 101-241 161-300 (325)
101 KOG0030 Myosin essential light 98.8 2.8E-08 6.1E-13 91.4 10.6 132 100-245 11-150 (152)
102 PTZ00183 centrin; Provisional 98.8 3.3E-08 7.1E-13 97.0 12.2 101 136-247 19-119 (158)
103 cd05022 S-100A13 S-100A13: S-1 98.8 1.2E-08 2.6E-13 89.6 7.2 68 174-247 8-76 (89)
104 PLN02964 phosphatidylserine de 98.8 3.3E-08 7.2E-13 115.6 12.0 99 99-202 139-243 (644)
105 PTZ00184 calmodulin; Provision 98.8 8.1E-08 1.8E-12 93.0 12.3 101 136-247 13-113 (149)
106 COG5126 FRQ1 Ca2+-binding prot 98.8 6.6E-08 1.4E-12 93.4 11.3 101 136-248 22-122 (160)
107 cd05026 S-100Z S-100Z: S-100Z 98.7 2.8E-08 6E-13 88.6 7.5 71 174-247 10-82 (93)
108 KOG0028 Ca2+-binding protein ( 98.7 1.4E-07 3.1E-12 89.0 10.8 105 134-249 33-137 (172)
109 cd05027 S-100B S-100B: S-100B 98.7 6.8E-08 1.5E-12 85.0 7.6 71 174-247 8-80 (88)
110 KOG1158 NADP/FAD dependent oxi 98.6 2.6E-07 5.7E-12 107.6 13.4 126 663-830 490-616 (645)
111 cd05025 S-100A1 S-100A1: S-100 98.6 1.6E-07 3.5E-12 83.6 7.5 72 173-247 8-81 (92)
112 COG0369 CysJ Sulfite reductase 98.6 1E-06 2.2E-11 102.8 16.2 173 574-830 372-558 (587)
113 cd05031 S-100A10_like S-100A10 98.6 1.5E-07 3.3E-12 84.1 7.2 72 173-247 7-80 (94)
114 smart00027 EH Eps15 homology d 98.6 1.6E-07 3.4E-12 84.4 7.3 86 172-269 8-93 (96)
115 cd00252 SPARC_EC SPARC_EC; ext 98.5 2.4E-07 5.2E-12 85.6 7.6 62 172-245 46-107 (116)
116 KOG4223 Reticulocalbin, calume 98.5 3.7E-07 8E-12 95.9 9.9 142 100-249 74-231 (325)
117 cd00052 EH Eps15 homology doma 98.5 4.6E-07 9.9E-12 75.2 7.1 61 177-247 2-62 (67)
118 cd00213 S-100 S-100: S-100 dom 98.4 5.2E-07 1.1E-11 79.6 7.5 72 173-247 7-80 (88)
119 PLN02964 phosphatidylserine de 98.4 1.3E-06 2.9E-11 102.3 12.7 118 115-248 118-245 (644)
120 KOG4666 Predicted phosphate ac 98.4 3.4E-07 7.4E-12 95.2 6.7 137 100-250 220-363 (412)
121 KOG0037 Ca2+-binding protein, 98.4 1.7E-06 3.7E-11 86.2 11.4 126 97-244 91-218 (221)
122 cd05023 S-100A11 S-100A11: S-1 98.4 7.1E-07 1.5E-11 78.7 7.4 71 174-247 9-81 (89)
123 PF13499 EF-hand_7: EF-hand do 98.4 6.2E-07 1.3E-11 74.4 6.4 61 136-200 2-66 (66)
124 cd05029 S-100A6 S-100A6: S-100 98.4 9.4E-07 2E-11 77.8 7.5 68 175-247 11-80 (88)
125 KOG0044 Ca2+ sensor (EF-Hand s 98.4 2.9E-06 6.4E-11 84.9 12.0 105 132-247 24-129 (193)
126 KOG0751 Mitochondrial aspartat 98.4 9.6E-07 2.1E-11 96.3 9.1 148 100-249 33-210 (694)
127 KOG0377 Protein serine/threoni 98.4 3E-06 6.4E-11 91.4 11.7 136 102-248 463-617 (631)
128 KOG2562 Protein phosphatase 2 98.4 2E-06 4.3E-11 94.1 10.6 141 102-242 277-420 (493)
129 KOG0034 Ca2+/calmodulin-depend 98.2 4.8E-06 1E-10 83.4 10.0 99 99-202 65-175 (187)
130 cd00051 EFh EF-hand, calcium b 98.2 3E-06 6.5E-11 68.1 6.9 61 176-244 2-62 (63)
131 PF13833 EF-hand_8: EF-hand do 98.2 4.4E-06 9.5E-11 66.3 6.5 52 187-245 1-52 (54)
132 PF13833 EF-hand_8: EF-hand do 98.0 1.4E-05 3E-10 63.4 6.6 50 152-201 2-52 (54)
133 cd05030 calgranulins Calgranul 98.0 1.5E-05 3.4E-10 70.2 7.3 70 175-247 9-80 (88)
134 PF00036 EF-hand_1: EF hand; 98.0 7.2E-06 1.6E-10 56.0 3.6 28 175-202 1-28 (29)
135 PF14658 EF-hand_9: EF-hand do 97.9 2.6E-05 5.6E-10 63.6 6.3 62 178-246 2-64 (66)
136 PRK05419 putative sulfite oxid 97.9 1.3E-05 2.8E-10 81.9 5.8 127 365-525 68-194 (205)
137 PF00036 EF-hand_1: EF hand; 97.9 1.3E-05 2.8E-10 54.7 3.8 27 220-246 2-28 (29)
138 KOG2643 Ca2+ binding protein, 97.9 8.7E-05 1.9E-09 80.9 11.6 125 108-245 238-383 (489)
139 KOG1159 NADP-dependent flavopr 97.8 0.00027 5.8E-09 78.3 13.7 115 562-732 358-483 (574)
140 cd05026 S-100Z S-100Z: S-100Z 97.8 9.8E-05 2.1E-09 65.8 8.0 66 136-204 12-83 (93)
141 cd05022 S-100A13 S-100A13: S-1 97.8 0.0001 2.2E-09 64.9 7.8 66 136-204 10-77 (89)
142 KOG2643 Ca2+ binding protein, 97.7 6.5E-05 1.4E-09 81.8 7.7 127 105-247 320-454 (489)
143 cd05027 S-100B S-100B: S-100B 97.7 9.9E-05 2.1E-09 65.0 7.6 66 136-204 10-81 (88)
144 KOG0036 Predicted mitochondria 97.7 0.00018 3.9E-09 78.0 10.9 99 135-250 15-114 (463)
145 cd00051 EFh EF-hand, calcium b 97.7 0.00011 2.4E-09 58.8 7.2 60 137-200 3-62 (63)
146 KOG0031 Myosin regulatory ligh 97.7 0.00047 1E-08 65.1 11.6 97 138-249 36-132 (171)
147 PRK12309 transaldolase/EF-hand 97.7 0.00013 2.9E-09 81.5 9.2 56 170-246 330-385 (391)
148 KOG0041 Predicted Ca2+-binding 97.7 7.1E-05 1.5E-09 73.3 5.9 65 174-247 99-164 (244)
149 cd05025 S-100A1 S-100A1: S-100 97.7 0.00017 3.6E-09 64.2 7.8 67 135-204 10-82 (92)
150 cd00052 EH Eps15 homology doma 97.7 0.00016 3.4E-09 59.7 7.2 59 138-202 3-61 (67)
151 KOG0030 Myosin essential light 97.6 0.00068 1.5E-08 63.0 10.7 108 132-248 9-118 (152)
152 PF13405 EF-hand_6: EF-hand do 97.6 8.4E-05 1.8E-09 51.7 3.6 27 175-201 1-27 (31)
153 cd05031 S-100A10_like S-100A10 97.5 0.00034 7.3E-09 62.5 8.1 64 136-202 10-79 (94)
154 smart00027 EH Eps15 homology d 97.5 0.00043 9.2E-09 62.1 8.5 62 135-202 11-72 (96)
155 cd05024 S-100A10 S-100A10: A s 97.5 0.00033 7.1E-09 61.4 7.3 69 175-247 9-77 (91)
156 cd00252 SPARC_EC SPARC_EC; ext 97.5 0.00032 7E-09 64.9 7.5 59 134-200 48-106 (116)
157 cd05029 S-100A6 S-100A6: S-100 97.4 0.00059 1.3E-08 60.1 8.1 53 152-204 26-81 (88)
158 cd05023 S-100A11 S-100A11: S-1 97.4 0.00066 1.4E-08 59.9 7.9 64 137-203 12-81 (89)
159 PF13202 EF-hand_5: EF hand; P 97.4 0.00017 3.7E-09 47.4 3.1 25 176-200 1-25 (25)
160 cd00213 S-100 S-100: S-100 dom 97.4 0.0005 1.1E-08 60.5 7.1 67 135-203 9-80 (88)
161 COG2717 Predicted membrane pro 97.4 0.00041 9E-09 69.9 6.9 121 371-525 74-194 (209)
162 cd05024 S-100A10 S-100A10: A s 97.2 0.00099 2.2E-08 58.4 6.9 63 101-167 6-77 (91)
163 PF13202 EF-hand_5: EF hand; P 97.2 0.00049 1.1E-08 45.3 3.5 24 221-244 2-25 (25)
164 KOG4251 Calcium binding protei 97.1 0.0014 2.9E-08 66.2 7.0 137 102-245 100-263 (362)
165 cd05030 calgranulins Calgranul 96.9 0.0029 6.2E-08 55.8 7.3 53 151-203 23-80 (88)
166 KOG0040 Ca2+-binding actin-bun 96.9 0.0056 1.2E-07 75.2 11.6 131 98-244 2248-2396(2399)
167 PF12763 EF-hand_4: Cytoskelet 96.8 0.0055 1.2E-07 55.6 8.1 90 171-272 7-97 (104)
168 COG2375 ViuB Siderophore-inter 96.8 0.31 6.7E-06 51.5 21.7 197 528-828 16-242 (265)
169 KOG0038 Ca2+-binding kinase in 96.7 0.0031 6.8E-08 58.9 6.1 98 99-201 70-176 (189)
170 PRK12309 transaldolase/EF-hand 96.7 0.0036 7.8E-08 70.2 7.3 58 128-202 328-385 (391)
171 PF14788 EF-hand_10: EF hand; 96.7 0.0054 1.2E-07 47.3 6.0 49 154-202 1-49 (51)
172 PF13405 EF-hand_6: EF-hand do 96.6 0.0027 5.9E-08 44.0 3.7 27 220-246 2-28 (31)
173 PF10591 SPARC_Ca_bdg: Secrete 96.6 0.002 4.4E-08 59.4 4.0 65 168-242 48-112 (113)
174 KOG0377 Protein serine/threoni 96.5 0.0074 1.6E-07 65.9 8.0 63 136-202 549-615 (631)
175 KOG4065 Uncharacterized conser 96.4 0.0076 1.6E-07 54.0 6.1 66 177-243 70-142 (144)
176 PF14788 EF-hand_10: EF hand; 96.4 0.0091 2E-07 46.1 5.6 48 190-245 1-48 (51)
177 KOG4251 Calcium binding protei 96.2 0.014 2.9E-07 59.2 7.5 126 105-242 200-341 (362)
178 PF12763 EF-hand_4: Cytoskelet 96.1 0.015 3.2E-07 52.8 6.6 48 152-201 23-70 (104)
179 PF14658 EF-hand_9: EF-hand do 96.1 0.018 3.9E-07 47.2 6.4 59 139-201 3-63 (66)
180 KOG0041 Predicted Ca2+-binding 95.6 0.072 1.6E-06 52.8 9.4 100 136-243 101-200 (244)
181 KOG0046 Ca2+-binding actin-bun 95.3 0.037 8E-07 62.1 7.1 67 175-247 20-86 (627)
182 KOG0040 Ca2+-binding actin-bun 94.9 0.045 9.7E-07 67.8 6.6 73 175-248 2254-2326(2399)
183 smart00054 EFh EF-hand, calciu 94.9 0.04 8.7E-07 36.0 3.7 27 220-246 2-28 (29)
184 KOG0751 Mitochondrial aspartat 94.8 0.099 2.2E-06 58.2 8.2 85 105-201 113-206 (694)
185 smart00054 EFh EF-hand, calciu 94.5 0.039 8.5E-07 36.1 3.0 26 176-201 2-27 (29)
186 KOG0039 Ferric reductase, NADH 93.7 0.51 1.1E-05 57.0 12.2 79 115-201 2-88 (646)
187 KOG4065 Uncharacterized conser 92.8 0.22 4.8E-06 44.9 5.4 58 106-163 70-142 (144)
188 KOG0169 Phosphoinositide-speci 92.4 0.92 2E-05 53.9 11.2 129 105-247 138-275 (746)
189 PF08021 FAD_binding_9: Sidero 92.2 0.68 1.5E-05 43.1 8.1 66 533-598 1-91 (117)
190 PF09279 EF-hand_like: Phospho 92.1 0.34 7.3E-06 41.9 5.7 67 175-248 1-71 (83)
191 KOG3866 DNA-binding protein of 92.1 0.27 5.8E-06 51.8 5.7 95 149-245 220-323 (442)
192 KOG4347 GTPase-activating prot 92.0 0.39 8.5E-06 55.8 7.4 95 97-196 498-612 (671)
193 PF10591 SPARC_Ca_bdg: Secrete 91.9 0.084 1.8E-06 48.8 1.7 58 134-197 54-111 (113)
194 PLN02952 phosphoinositide phos 90.6 1.4 3.1E-05 52.0 10.5 89 151-246 13-110 (599)
195 KOG0046 Ca2+-binding actin-bun 90.5 0.6 1.3E-05 52.9 6.8 71 97-168 13-87 (627)
196 KOG2562 Protein phosphatase 2 90.0 1.8 3.9E-05 48.6 9.9 103 135-242 140-249 (493)
197 KOG4578 Uncharacterized conser 89.7 0.2 4.3E-06 53.2 2.2 69 175-250 334-402 (421)
198 KOG0035 Ca2+-binding actin-bun 86.8 3.7 8.1E-05 50.2 10.6 95 101-198 748-848 (890)
199 KOG3555 Ca2+-binding proteogly 86.2 0.84 1.8E-05 49.0 4.2 63 173-247 249-311 (434)
200 KOG0169 Phosphoinositide-speci 85.8 3.4 7.3E-05 49.3 9.3 87 149-247 147-233 (746)
201 KOG4666 Predicted phosphate ac 85.5 0.47 1E-05 50.5 2.0 85 152-247 241-325 (412)
202 KOG2243 Ca2+ release channel ( 85.1 4 8.6E-05 50.7 9.3 63 180-251 4063-4125(5019)
203 KOG1707 Predicted Ras related/ 84.8 3.4 7.4E-05 48.0 8.5 146 102-250 194-347 (625)
204 PF09069 EF-hand_3: EF-hand; 82.4 9.2 0.0002 33.7 8.3 71 173-248 2-77 (90)
205 PF08726 EFhand_Ca_insen: Ca2+ 76.1 1.3 2.9E-05 36.9 1.1 59 171-242 3-65 (69)
206 PF09279 EF-hand_like: Phospho 75.3 7.7 0.00017 33.3 5.9 62 136-202 2-69 (83)
207 PRK10639 formate dehydrogenase 71.1 31 0.00067 35.6 10.1 114 371-493 54-170 (211)
208 KOG0998 Synaptic vesicle prote 69.3 5.4 0.00012 49.8 4.7 136 101-250 127-349 (847)
209 KOG1029 Endocytic adaptor prot 68.4 4.8 0.0001 47.7 3.7 65 171-245 192-256 (1118)
210 KOG1265 Phospholipase C [Lipid 68.4 53 0.0012 40.2 12.1 127 114-247 161-300 (1189)
211 KOG1029 Endocytic adaptor prot 62.1 19 0.0004 43.1 6.8 60 103-166 195-257 (1118)
212 KOG3555 Ca2+-binding proteogly 61.5 8.3 0.00018 41.8 3.6 61 133-201 249-309 (434)
213 KOG4578 Uncharacterized conser 60.8 6 0.00013 42.4 2.4 59 140-202 339-398 (421)
214 PF05042 Caleosin: Caleosin re 60.5 23 0.00049 35.1 6.2 33 216-248 94-126 (174)
215 KOG4403 Cell surface glycoprot 59.2 66 0.0014 36.1 9.9 51 150-204 80-131 (575)
216 KOG0035 Ca2+-binding actin-bun 55.2 22 0.00047 43.9 6.1 72 173-247 746-817 (890)
217 PF05517 p25-alpha: p25-alpha 54.1 44 0.00096 32.6 7.1 66 177-247 2-70 (154)
218 PLN02631 ferric-chelate reduct 48.8 21 0.00045 43.5 4.7 55 784-844 642-697 (699)
219 KOG0042 Glycerol-3-phosphate d 48.5 25 0.00055 40.8 4.9 65 175-247 594-658 (680)
220 TIGR01848 PHA_reg_PhaR polyhyd 47.9 42 0.0009 30.4 5.2 66 181-248 10-79 (107)
221 PF05517 p25-alpha: p25-alpha 46.8 1.5E+02 0.0033 28.9 9.6 66 138-204 3-71 (154)
222 PF05042 Caleosin: Caleosin re 46.0 74 0.0016 31.6 7.1 68 173-244 95-164 (174)
223 KOG1955 Ral-GTPase effector RA 45.5 33 0.0007 39.0 5.1 88 136-229 233-321 (737)
224 PF09068 EF-hand_2: EF hand; 45.4 1.8E+02 0.0039 27.4 9.5 102 138-245 4-124 (127)
225 PF01292 Ni_hydr_CYTB: Prokary 45.2 1.7E+02 0.0037 28.7 10.1 22 371-392 43-64 (182)
226 KOG1955 Ral-GTPase effector RA 45.1 35 0.00076 38.8 5.2 62 176-247 233-294 (737)
227 PLN02292 ferric-chelate reduct 42.5 31 0.00066 42.2 4.8 55 783-844 645-700 (702)
228 KOG4347 GTPase-activating prot 42.2 38 0.00082 40.1 5.2 77 155-240 535-612 (671)
229 PF01794 Ferric_reduct: Ferric 40.9 56 0.0012 29.9 5.4 52 435-493 2-54 (125)
230 KOG4004 Matricellular protein 39.7 13 0.00028 37.1 0.9 57 178-244 191-248 (259)
231 PF12174 RST: RCD1-SRO-TAF4 (R 39.1 65 0.0014 27.0 4.8 51 152-205 6-56 (70)
232 PLN02228 Phosphoinositide phos 39.1 1.1E+02 0.0024 36.4 8.5 69 171-247 21-93 (567)
233 KOG1707 Predicted Ras related/ 38.5 41 0.00088 39.5 4.7 63 173-245 314-376 (625)
234 PF00033 Cytochrom_B_N: Cytoch 36.0 1.3E+02 0.0029 29.6 7.7 25 370-394 46-70 (188)
235 PF07879 PHB_acc_N: PHB/PHA ac 35.7 50 0.0011 27.0 3.4 22 181-202 10-31 (64)
236 TIGR01583 formate-DH-gamm form 35.5 2.1E+02 0.0046 29.1 9.1 24 370-393 48-71 (204)
237 KOG2871 Uncharacterized conser 34.8 28 0.00061 38.3 2.5 63 172-241 307-369 (449)
238 PLN02952 phosphoinositide phos 34.2 1.4E+02 0.0031 35.8 8.4 83 114-201 13-109 (599)
239 PF08726 EFhand_Ca_insen: Ca2+ 33.8 18 0.0004 30.2 0.8 56 103-162 6-65 (69)
240 KOG4826 C-8,7 sterol isomerase 33.7 61 0.0013 32.9 4.4 20 372-391 54-73 (229)
241 PF09068 EF-hand_2: EF hand; 33.2 1.6E+02 0.0034 27.8 7.0 50 152-201 57-124 (127)
242 PLN02222 phosphoinositide phos 33.2 1.4E+02 0.003 35.7 8.0 68 172-247 23-91 (581)
243 PF04876 Tenui_NCP: Tenuivirus 33.0 1.5E+02 0.0032 28.5 6.5 69 151-250 96-164 (175)
244 cd07316 terB_like_DjlA N-termi 31.9 2.2E+02 0.0047 25.3 7.6 80 114-199 12-98 (106)
245 PF05297 Herpes_LMP1: Herpesvi 31.8 15 0.00033 38.7 0.0 14 505-518 171-184 (381)
246 PF14513 DAG_kinase_N: Diacylg 31.8 55 0.0012 31.4 3.7 46 189-245 6-59 (138)
247 PF14358 DUF4405: Domain of un 31.6 52 0.0011 26.8 3.1 24 369-392 40-63 (64)
248 cd07313 terB_like_2 tellurium 30.8 1.7E+02 0.0037 26.0 6.7 81 114-200 12-98 (104)
249 CHL00070 petB cytochrome b6 30.5 2.7E+02 0.0059 28.8 8.8 23 371-393 83-105 (215)
250 PF00404 Dockerin_1: Dockerin 29.8 48 0.001 20.9 1.9 16 184-199 1-16 (21)
251 PLN02844 oxidoreductase/ferric 29.7 64 0.0014 39.7 4.7 56 428-492 153-211 (722)
252 PRK03735 cytochrome b6; Provis 29.4 2.9E+02 0.0062 28.9 8.8 23 371-393 91-113 (223)
253 PLN02230 phosphoinositide phos 28.5 2E+02 0.0044 34.5 8.4 70 171-246 26-102 (598)
254 PF13706 PepSY_TM_3: PepSY-ass 28.1 62 0.0014 23.4 2.6 21 371-391 5-25 (37)
255 KOG3866 DNA-binding protein of 27.6 69 0.0015 34.4 3.8 83 114-202 257-354 (442)
256 PRK10179 formate dehydrogenase 26.8 4E+02 0.0086 27.6 9.4 18 371-388 54-71 (217)
257 COG2976 Uncharacterized protei 26.2 66 0.0014 32.7 3.3 34 280-315 12-45 (207)
258 PF13172 PepSY_TM_1: PepSY-ass 26.1 1.1E+02 0.0023 21.6 3.5 23 371-393 6-28 (34)
259 COG1486 CelF Alpha-galactosida 25.2 2E+02 0.0044 33.0 7.3 55 666-737 5-59 (442)
260 PF08414 NADPH_Ox: Respiratory 25.2 1.7E+02 0.0036 26.4 5.2 62 174-249 30-95 (100)
261 PLN02228 Phosphoinositide phos 23.6 1.4E+02 0.0031 35.5 6.0 62 104-165 25-91 (567)
262 cd00284 Cytochrome_b_N Cytochr 23.5 2.8E+02 0.0062 28.3 7.4 78 373-490 74-190 (200)
263 PRK12446 undecaprenyldiphospho 22.8 77 0.0017 35.4 3.5 24 665-688 2-27 (352)
264 cd07313 terB_like_2 tellurium 22.0 1.1E+02 0.0024 27.2 3.8 54 187-246 12-65 (104)
265 PF13301 DUF4079: Protein of u 21.0 5.3E+02 0.011 25.8 8.5 86 371-492 80-166 (175)
266 MTH00191 CYTB cytochrome b; Pr 20.8 3.5E+02 0.0075 30.5 8.1 76 373-490 79-193 (365)
No 1
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=3.4e-99 Score=887.00 Aligned_cols=640 Identities=49% Similarity=0.866 Sum_probs=567.7
Q ss_pred CCceeHHHHHHHHHHhccCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhhccccccccccchHHHHHHHHHHhCCCC
Q 042007 152 ENGITKEEVRMFWEDMTKKDLDARLQIFFDMCDKNGDGILTEDEVREVIVLSASENKLSNLKENSSTYAALIMEKLDPDC 231 (844)
Q Consensus 152 dG~I~f~EF~~~l~~~~~~~~~~~l~~~F~~fD~d~dG~It~eEl~~il~~~~~~~~l~~~~~~~~e~~~~if~~~D~d~ 231 (844)
+| |+++||. +.+.+.|++++.+|+|+|+ ++|.++.+|+.++++.+...+.....+++.+++...++++.|.++
T Consensus 2 ~~-~~~~~~~-----~~~~~~d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (646)
T KOG0039|consen 2 EG-ISFQELK-----ITDCSYDDKLQTFFDMYDK-GDGKLTEEEVRELIMSSISANWLSLIKKQTEEYAALIMEELDPDH 74 (646)
T ss_pred CC-cchhhhc-----ccCCChhHHHHHHHHHHhh-hcCCccHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhccccc
Confidence 67 9999998 6678999999999999999 999999999999998877766677778999999999999999999
Q ss_pred CCceeHHHHHHHHHcCCCCC----CCCCCccccchhhcccCCCCCCCccccccchhHHhhcCCceeehhHHHHHHHHHHH
Q 042007 232 KGYIEMWQLEILLRGMVNEE----GPKMNNRTSTLTKAMIPQNYRNPTTKFFSMTTEFIFDNFKRIWIVTLWLAVNLGLF 307 (844)
Q Consensus 232 dG~It~~EF~~ll~~~~~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~l~ 307 (844)
.|++.++++..++.+++... .....+ +....+.+.|.. +++..+.+.+...|+.++|.+++.+++|+.+++++|
T Consensus 75 ~~y~~~~~~~~ll~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lf 152 (646)
T KOG0039|consen 75 KGYITNEDLEILLLQIPTLLFAILLSFANL-SLLLSQPLKPTR-RKPLLRNLVRMGAFLPNLWLRVWVLFLWLGLNVGLF 152 (646)
T ss_pred cceeeecchhHHHHhchHHHHHHHHHHHHH-Hhhhcccccccc-ccccchheeeeeeeeccceEeeeeehHHHHHHHHHH
Confidence 99999999999999887541 000023 344555555433 456778888889999999999999999999999999
Q ss_pred HHHHHhhccCCcceeccceeeeeccccccchhhhHHHHHHHhhhhhhhhc-cccccccccCcchhhhHHHHHHHHHHHHH
Q 042007 308 MWKFIELQSGPVFQITGYCVCFAKGCGETLKFNMALILLTVCRRSLTKLR-STFLHKIIPFDDNLNFHKLIALGIAIGSI 386 (844)
Q Consensus 308 ~~~~~~y~~~~~~~~~g~~~~~ar~~~~~~~~~~~lill~~~Rn~l~~L~-~~~~~~~v~~d~~~~fHr~ig~~~~~~~~ 386 (844)
.|++.+|.....++++|+++++++++|.++++|++++++|+|||.++||+ .+.+..++|+|+++.||+.+|.....+..
T Consensus 153 ~~~~~~y~~~~~~~~~g~~~~~~~~~~~~l~~~~~~ill~~~R~~~~~L~~~~fl~~~~p~~~n~~fh~l~g~~~~~~~~ 232 (646)
T KOG0039|consen 153 TWRFLQYVYLGTRHILGLCLALARGSAETLNFNMALILLPVCRNRLTFLRCSTFLFSYLPFDRNLNFHKLVALTIAVFIL 232 (646)
T ss_pred HHHHHHHHhhhhhhhhhheeeeeccccccchhhHHHHHHHHHHHHHHHHHHhhhhheEeeccccchHHHHHHHHHHHHHH
Confidence 99999998888889999999999999999999999999999999999999 56777789999999999999999999999
Q ss_pred HHHHhhhhccccccccCCchhhhhhhhcccCCCCCceeeeccccchhHHHHHHHHHHHHHHhhhhhhhhccccccccccc
Q 042007 387 VHTLFHLLCNYPKLSSCRPEKFMYLLGPALNYHQPTYYDLMIHTVGYTGVLMLVIMAISFTLATHSFRRNVIKLPWIFHR 466 (844)
Q Consensus 387 vH~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~tG~~~~v~l~i~~~~s~~~~Rr~~~~~~~~~~~ 466 (844)
+|.++|.+|.+..++++....+.......++ ++.|+++..++.++||++++++|++|+++|++++||+.
T Consensus 233 ~H~w~~~~~~~~~~ih~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~tGv~~~i~~~im~v~s~~~fRR~~--------- 301 (646)
T KOG0039|consen 233 LHIWLHLVNFFPFLVHGLEYTISLASELFFL--PKTYKWLLLGVVGLTGVILLILMLIMFVLSLPFFRRRF--------- 301 (646)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHhccc--chhhhhhhcCCCcchhHHHHHHHHHHHHHhhHHHHHHH---------
Confidence 9999999888888777654433222333332 55677889999999999999999999999999999999
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHhccccccCCcCCcceeEeeeecchhhehhhhhHhhhcccccEEEEEEEEecCCEEE
Q 042007 467 FAGFNSFWYAHHLLVLAYVLLFMHGFFLIFDKPWYDKTTWIYIFFPVLFYANERFLAKFHDLNHKVEVIKAVIYTGNVLA 546 (844)
Q Consensus 467 ~~~ye~F~~~H~l~~~~~v~l~~H~~~~~~~~~~~~~~~w~~~~~~~~l~~~dr~~R~~r~~~~~~~i~~v~~~~~~v~~ 546 (844)
||+|||+||+++++|+++++||...++. .+|+|+++|+++|++||++|..|+ ..+++++++..+|+++++
T Consensus 302 ---~e~F~ytH~l~~v~~illi~hg~~~~~~------~~w~~~~~p~~ly~~dR~~r~~r~-~~~~~i~~~~llp~~vi~ 371 (646)
T KOG0039|consen 302 ---YEAFWYTHHLYIVFYILLIIHGGFRLLG------TTWMYIAVPVLLYILDRILRFLRS-QKNVKIAKVVLLPSDVLE 371 (646)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHhcccccc------cchhHHHHHHHHHHHHHHHHHHHH-hcCceEEEEEEcCCCeEE
Confidence 9999999999999999999999865443 589999999999999999999998 578999999999999999
Q ss_pred EEEeCCCCCccCCCcEEEEEcCCCCCCCccCcccccCCCCCceEEEEEecCCchHHHHHHHHhhcCCCCCCCCCCCcchh
Q 042007 547 LYMTKPPGFKYQSGMYLFVKCPDLSPFEWHPFSITSAPGDYYLSVHIRTLGDWTTELKQRFEKVCEAPAPAKPNRGNLMR 626 (844)
Q Consensus 547 l~i~~p~~~~~~pGQyv~l~~p~~s~~e~HPFTI~s~p~~~~l~l~Ir~~G~~T~~L~~~~~~~~~~~~~~~~g~~~~~~ 626 (844)
|+++||++|+|+||||+||+||.++.||||||||+|+|+|+++++|||+.||||++|++.+.+.++++ +.+..
T Consensus 372 L~~~Kp~~f~y~~Gqyifv~~p~ls~~qwHPFTItSsp~dd~lsvhIk~~g~wT~~L~~~~~~~~~~~---~~~~~---- 444 (646)
T KOG0039|consen 372 LIMSKPPGFKYKPGQYIFVNCPSLSKLEWHPFTITSAPEDDFLSVHIKALGDWTEKLRNAFSEVSQPP---ESDKS---- 444 (646)
T ss_pred EEEeCCCCCCCCCCCEEEEECccccccccCCceeecCCCCCEEEEEEEecCcHHHHHHHHHhhhcccc---ccccc----
Confidence 99999999999999999999999999999999999999999999999999999999999997644332 11100
Q ss_pred hhhhhhhccccccccccCcCEEEEeCccCCCCCCCCCCCeEEEEEcccchhchHHHHHHHHHHhhhcCcchhhhcCCCCC
Q 042007 627 METKSAANNANFEQIQASFPKILIKGPYGAPAQDYKNYDILLLIGLGIGATPFISIIKDLLNHIKSHERDTEFLENGFKK 706 (844)
Q Consensus 627 ~~~~~~~~~~~~~~~~~~~~~v~IdGPyG~~~~~~~~~~~vvlVagGiGITp~lsil~~l~~~~~~~~~~~~~~~~~~~~ 706 (844)
...+++.||||||++++++.+|++++|||||||+||++|++++++++.+.+...++.++.+...
T Consensus 445 ----------------~~~~~i~IdGPYG~~s~d~~~~e~~vLV~~GiGvtPf~sil~~l~~~~~~~~~~~~~~~~~~~~ 508 (646)
T KOG0039|consen 445 ----------------YPFPKILIDGPYGAPSQDVFKYEVLVLVGGGIGVTPFASILKDLLNKISLGRTKAPTSDYSDSL 508 (646)
T ss_pred ----------------ccCceEEEECCCCCCchhhhhcceEEEEccCcccCccHHHHHHHHhhccCCCCcCccccccccc
Confidence 1258999999999999999999999999999999999999999999987665443333444455
Q ss_pred CCcEEEEEEEeCCCChhhhHHHHHHHHhccCCCCeEEEEEEEecccCCCChhHHHHHHHHHhhhhcCCccccccCccccc
Q 042007 707 GPERAYFYWVTREQGSFEWFKGVMDDIADHDDKNVIEMHNYLTSVYEEGDARSALIAMVQKLQHAKNGVDIVSESRIKTH 786 (844)
Q Consensus 707 ~~~~v~l~W~~R~~~~~~wf~~~L~~l~~~~~~~~l~i~~ylT~~~~~~d~~~~~~~~~~~~~~~~~~~d~~sg~~~~~~ 786 (844)
.+++++|+|++|++.+++||.+++.++.+.+..+.+++++|+|+..++.|.++..+++.|.+.+++++.|+++|+++.+|
T Consensus 509 ~~~~~~F~Wv~~~~~sf~wf~~~l~~v~~~~~~~~~e~~~~~t~~~~~~d~~~~~~~~~~~~~~~~~~~di~~g~~~~~~ 588 (646)
T KOG0039|consen 509 KLKKVYFYWVTREQRSFEWFKGLLTEVEEYDSSGVIELHNYVTSSYEEGDARSALIQMVQKLLHAKNGVDIVTGLKVETH 588 (646)
T ss_pred eecceeEEEEeccccchHHHHHHHHHHHHHHhcCCchhheehhHhHhhhhhhhHHHHHHHhhcccccCccccccceeeee
Confidence 78999999999999999999999999998877677999999999999999999999999999999999999999999999
Q ss_pred ccCCChHHHHHHHHhhCCCCcEEEEEeCChhHHHHHHHHHHhhcCCCCceEEEEecCC
Q 042007 787 FARPNWRKVFGQLATDHESSRIGVFYCGSATLTKTLKELCLEFSLESPTRFDFHKENF 844 (844)
Q Consensus 787 ~gRPd~~~v~~~~~~~~~~~~v~V~~CGP~~m~~~vr~~~~~~~~~~~~~~~~h~E~F 844 (844)
+|||||+++++++++.|++.+++||+||||+|++++|+.|.+.+.++.+.|+||+|+|
T Consensus 589 ~gRPn~~~~~~~~~~~~~~~~vgVf~CGp~~l~~~~~~~~~~~~~~~~~~~~f~~E~F 646 (646)
T KOG0039|consen 589 FGRPNWKEVFKEIAKSHPNVRVGVFSCGPPGLVKELRKLCNDFSSSTATRFEFHKENF 646 (646)
T ss_pred CCCCCHHHHHHHHHhhCCCceEEEEEeCCHHHHHHHHHHHHhcccccCceeeeeeccC
Confidence 9999999999999999988779999999999999999999999888889999999998
No 2
>PLN02631 ferric-chelate reductase
Probab=100.00 E-value=1.7e-60 Score=554.46 Aligned_cols=366 Identities=23% Similarity=0.410 Sum_probs=284.3
Q ss_pred HHHHHHHHHHHHHHHHhhccCCcc----ee------ccceeeeeccccccchhhhHHHHHHHhhh-hhhhhccccccccc
Q 042007 297 TLWLAVNLGLFMWKFIELQSGPVF----QI------TGYCVCFAKGCGETLKFNMALILLTVCRR-SLTKLRSTFLHKII 365 (844)
Q Consensus 297 ~~~~~~~v~l~~~~~~~y~~~~~~----~~------~g~~~~~ar~~~~~~~~~~~lill~~~Rn-~l~~L~~~~~~~~v 365 (844)
++++++.+++.+|.+..|.....- .. ......+|+|+|.++..++|+++||++|| .++|++| +
T Consensus 110 ~~~~~~f~~~~~w~~~~y~~~~~~~~~~~~~~~~~~~~~l~~ig~RtGila~~~lpll~L~a~Rnn~L~~ltG------~ 183 (699)
T PLN02631 110 LTFSLLFVALLAWSLYNYLYLSYHVHLHNDDNAKIWQAKFRAFGLRIGYVGHICWAFLFFPVTRASTILPLVG------L 183 (699)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhheeccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHC------C
Confidence 455555566666665554332100 00 01124689999999999999999999999 6899986 4
Q ss_pred cCcchhhhHHHHHHHHHHHHHHHHHhhhhccccccccCCchhhhhhhhcccCCCCCceeeeccccchhHHHHHHHHHHHH
Q 042007 366 PFDDNLNFHKLIALGIAIGSIVHTLFHLLCNYPKLSSCRPEKFMYLLGPALNYHQPTYYDLMIHTVGYTGVLMLVIMAIS 445 (844)
Q Consensus 366 ~~d~~~~fHr~ig~~~~~~~~vH~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~tG~~~~v~l~i~ 445 (844)
+||+++.||||+|+++++++++|+++++. ++.. .+.+.+. +. ..+.| +.+++|+++++++++|
T Consensus 184 s~e~~i~yHRWlGri~~~la~iH~i~y~i-~~~~-----~~~~~~~----~~-w~~~~------~~~~~GviA~v~~~lm 246 (699)
T PLN02631 184 TSESSIKYHIWLGHVSNFLFLVHTVVFLI-YWAM-----INKLMET----FA-WNPTY------VPNLAGTIAMVIGIAM 246 (699)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHh-----hchhhhh----hh-ccccc------chHHHHHHHHHHHHHH
Confidence 78899999999999999999999999983 2210 1111110 10 01111 2357899999999999
Q ss_pred HHhhhhhhhhccccccccccccccchhhHHHHHHHHHHHHHHHHHhccccccCCcCCcceeEe-eeecchhhehhhhhHh
Q 042007 446 FTLATHSFRRNVIKLPWIFHRFAGFNSFWYAHHLLVLAYVLLFMHGFFLIFDKPWYDKTTWIY-IFFPVLFYANERFLAK 524 (844)
Q Consensus 446 ~~~s~~~~Rr~~~~~~~~~~~~~~ye~F~~~H~l~~~~~v~l~~H~~~~~~~~~~~~~~~w~~-~~~~~~l~~~dr~~R~ 524 (844)
+++|+++|||++ ||+|+++|++++++++++++|... .|.| +++++++|++||++|.
T Consensus 247 ~~~Sl~~~RRr~------------YE~F~~~Hillaifiv~~~~H~g~-----------~w~~~~~~~ialw~~DR~lR~ 303 (699)
T PLN02631 247 WVTSLPSFRRKK------------FELFFYTHHLYGLYIVFYVIHVGD-----------SWFCMILPNIFLFFIDRYLRF 303 (699)
T ss_pred HHhccHHHHhhh------------hhHHHHHHHHHHHHHHheEEecCC-----------chHHHHHHHHHHHHHHHHHHH
Confidence 999999999998 999999999999877777888531 3333 4456889999999999
Q ss_pred hhcccccEEEEEEEEecCCEEEEEEeCCCCCccCCCcEEEEEcCCCCCCCccCcccccCCC--CCceEEEEEecCCchHH
Q 042007 525 FHDLNHKVEVIKAVIYTGNVLALYMTKPPGFKYQSGMYLFVKCPDLSPFEWHPFSITSAPG--DYYLSVHIRTLGDWTTE 602 (844)
Q Consensus 525 ~r~~~~~~~i~~v~~~~~~v~~l~i~~p~~~~~~pGQyv~l~~p~~s~~e~HPFTI~s~p~--~~~l~l~Ir~~G~~T~~ 602 (844)
+|... ..++++++.++++++++++++|++++|+||||++|++|.++.+|||||||+|+|+ ++.++++||+.|+||++
T Consensus 304 ~r~~~-~~~lv~~~~l~~d~l~l~~~~~~~~~~~PGQfvfL~~p~~s~~q~HPFSIaSsp~~~~~~L~~~IK~~Gg~T~~ 382 (699)
T PLN02631 304 LQSTK-RSRLVSARILPSDNLELTFSKTPGLHYTPTSILFLHVPSISKLQWHPFTITSSSNLEKDTLSVVIRRQGSWTQK 382 (699)
T ss_pred HHHhc-eEEEEEEEEeCCCeEEEEEEcCCCCcCCCCceEEEEeccCCccceEEEEEeccCCCCCCEEEEEEEcCChHHHH
Confidence 98764 4788889999999999999998899999999999999999999999999999984 57899999999999999
Q ss_pred HHHHHHhhcCCCCCCCCCCCcchhhhhhhhhccccccccccCcCEEEEeCccCCCCCCCCCCCeEEEEEcccchhchHHH
Q 042007 603 LKQRFEKVCEAPAPAKPNRGNLMRMETKSAANNANFEQIQASFPKILIKGPYGAPAQDYKNYDILLLIGLGIGATPFISI 682 (844)
Q Consensus 603 L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IdGPyG~~~~~~~~~~~vvlVagGiGITp~lsi 682 (844)
|++.+.. .|. ..++.+|||||.+..+..+++++||||||+||||++|+
T Consensus 383 L~~~l~~---------~g~-----------------------~i~V~VeGPYG~~~~~~~~~~~vVlIAGGsGITP~lSi 430 (699)
T PLN02631 383 LYTHLSS---------SID-----------------------SLEVSTEGPYGPNSFDVSRHNSLILVSGGSGITPFISV 430 (699)
T ss_pred HHHhhhc---------CCC-----------------------eeEEEEECCCCCCCCCcCCCCcEEEEEeCcChHhHHHH
Confidence 9987631 110 26899999999876566788999999999999999999
Q ss_pred HHHHHHHhhhcCcchhhhcCCCCCCCcEEEEEEEeCCCChhhhHHHHHHHHhcc---CCCCeEEEEEEEecccC
Q 042007 683 IKDLLNHIKSHERDTEFLENGFKKGPERAYFYWVTREQGSFEWFKGVMDDIADH---DDKNVIEMHNYLTSVYE 753 (844)
Q Consensus 683 l~~l~~~~~~~~~~~~~~~~~~~~~~~~v~l~W~~R~~~~~~wf~~~L~~l~~~---~~~~~l~i~~ylT~~~~ 753 (844)
+++++++..... .+.++|+|+|++|+.+++. |.+++..++.. ..+.++++++|+|++.+
T Consensus 431 L~~ll~~~~~~~-----------~~~~~V~Li~~vR~~~dL~-f~deL~~l~~~~~~l~~~ni~i~iyVTR~~~ 492 (699)
T PLN02631 431 IRELIFQSQNPS-----------TKLPDVLLVCSFKHYHDLA-FLDLIFPLDISVSDISRLNLRIEAYITREDK 492 (699)
T ss_pred HHHHHhcccccc-----------cCCCcEEEEEEECCHHHhh-hHHHHhhhccchhhhhcCceEEEEEEcCCCC
Confidence 999987632211 1345899999999999995 77878764211 12348999999999643
No 3
>PLN02844 oxidoreductase/ferric-chelate reductase
Probab=100.00 E-value=3.4e-59 Score=546.35 Aligned_cols=437 Identities=25% Similarity=0.477 Sum_probs=329.0
Q ss_pred eeeeccccccchhhhHHHHHHHhhh-hhhhhccccccccccCcchhhhHHHHHHHHHHHHHHHHHhhhhccccccccCCc
Q 042007 327 VCFAKGCGETLKFNMALILLTVCRR-SLTKLRSTFLHKIIPFDDNLNFHKLIALGIAIGSIVHTLFHLLCNYPKLSSCRP 405 (844)
Q Consensus 327 ~~~ar~~~~~~~~~~~lill~~~Rn-~l~~L~~~~~~~~v~~d~~~~fHr~ig~~~~~~~~vH~~~~~~~~f~~~~~~~~ 405 (844)
..+|+|.|.+...++|++++|++|| .+.|+++ +|||+++.||||+|+++++++++|+++|+. .+. ..
T Consensus 153 ~~va~R~G~la~~~Lpll~llv~Rnn~l~~ltG------is~e~~i~fHrWlGr~~~llallH~i~~~i-~w~--~~--- 220 (722)
T PLN02844 153 LRVATRFGLLAEACLALLLLPVLRGLALFRLLG------IQFEASVRYHVWLGTSMIFFATVHGASTLF-IWG--IS--- 220 (722)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccHHHHhhC------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH--hh---
Confidence 3579999999999999999999999 4677754 699999999999999999999999999873 211 11
Q ss_pred hhhhhhhhcccCCCCCceeeeccccchhHHHHHHHHHHHHHHhhhhhhhhccccccccccccccchhhHHHHHHHHHHHH
Q 042007 406 EKFMYLLGPALNYHQPTYYDLMIHTVGYTGVLMLVIMAISFTLATHSFRRNVIKLPWIFHRFAGFNSFWYAHHLLVLAYV 485 (844)
Q Consensus 406 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~tG~~~~v~l~i~~~~s~~~~Rr~~~~~~~~~~~~~~ye~F~~~H~l~~~~~v 485 (844)
+...+.+. .| ...+...++|+++++++++|+++|++++||+. ||+||++|++++++++
T Consensus 221 ~~~~~~~~---------~w-~~~~~~~~~G~IAlv~l~iL~itSl~~iRR~~------------YElF~~~H~L~ivflv 278 (722)
T PLN02844 221 HHIQDEIW---------KW-QKTGRIYLAGEIALVTGLVIWITSLPQIRRKR------------FEIFYYTHHLYIVFLI 278 (722)
T ss_pred cchhhhhh---------hh-ccCcchhhhHHHHHHHHHHHHHHhhHHHHhhh------------hHHHHHHHHHHHHHHH
Confidence 10000010 01 11223357899999999999999999999998 9999999999988888
Q ss_pred HHHHHhccccccCCcCCcceeEeeeecchhhehhhhhHhhhcccccEEEEEEEEecCCEEEEEEeCCCCCccCCCcEEEE
Q 042007 486 LLFMHGFFLIFDKPWYDKTTWIYIFFPVLFYANERFLAKFHDLNHKVEVIKAVIYTGNVLALYMTKPPGFKYQSGMYLFV 565 (844)
Q Consensus 486 ~l~~H~~~~~~~~~~~~~~~w~~~~~~~~l~~~dr~~R~~r~~~~~~~i~~v~~~~~~v~~l~i~~p~~~~~~pGQyv~l 565 (844)
++++|... ..|.|+++++++|++||++|.++.+ ....+++++.++++++++++++|..++|+||||++|
T Consensus 279 ~~~~H~~~----------~~~~~v~~~i~L~~~DRllR~~~s~-~~~~vvs~~~~~~~~v~l~i~r~~~~~f~PGQfV~L 347 (722)
T PLN02844 279 FFLFHAGD----------RHFYMVFPGIFLFGLDKLLRIVQSR-PETCILSARLFPCKAIELVLPKDPGLKYAPTSVIFM 347 (722)
T ss_pred hhhHhhcC----------cchhhhHHHHHHHHHHHHhheEEEe-eeEEEEEEEEecCCEEEEEEECCCCCCcCCCeeEEE
Confidence 88999842 1123566678999999999998775 344566778889999999999999999999999999
Q ss_pred EcCCCCCCCccCcccccCC--CCCceEEEEEecCCchHHHHHHHHhhcCCCCCCCCCCCcchhhhhhhhhcccccccccc
Q 042007 566 KCPDLSPFEWHPFSITSAP--GDYYLSVHIRTLGDWTTELKQRFEKVCEAPAPAKPNRGNLMRMETKSAANNANFEQIQA 643 (844)
Q Consensus 566 ~~p~~s~~e~HPFTI~s~p--~~~~l~l~Ir~~G~~T~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 643 (844)
++|..+.+|||||||+|+| +++.++++||+.||||++|.+.+....+ +|... .
T Consensus 348 ~vp~~s~~q~HPFSIaS~p~~~~~~l~~~IK~~gG~T~~L~~~i~~~l~------~g~~~-------------------~ 402 (722)
T PLN02844 348 KIPSISRFQWHPFSITSSSNIDDHTMSVIIKCEGGWTNSLYNKIQAELD------SETNQ-------------------M 402 (722)
T ss_pred EECCCCceeEEEEEeecCCCCCCCeEEEEEEeCCCchHHHHHHHHhhcc------CCCCc-------------------c
Confidence 9999999999999999987 4678999999999999999988654221 11000 0
Q ss_pred CcCEEEEeCccCCCCCCCCCCCeEEEEEcccchhchHHHHHHHHHHhhhcCcchhhhcCCCCCCCcEEEEEEEeCCCChh
Q 042007 644 SFPKILIKGPYGAPAQDYKNYDILLLIGLGIGATPFISIIKDLLNHIKSHERDTEFLENGFKKGPERAYFYWVTREQGSF 723 (844)
Q Consensus 644 ~~~~v~IdGPyG~~~~~~~~~~~vvlVagGiGITp~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~~v~l~W~~R~~~~~ 723 (844)
...++.|+||||.+..+...+++++|||||+||||++|+++++.++..... ...++|+|+|++|+.+++
T Consensus 403 ~~~~v~VeGPYG~~s~~~~~~~~lVLIAGGiGITPfLSiLrdl~~~~~~~~-----------~~~~~V~LIw~vR~~~dL 471 (722)
T PLN02844 403 NCIPVAIEGPYGPASVDFLRYDSLLLVAGGIGITPFLSILKEIASQSSSRY-----------RFPKRVQLIYVVKKSQDI 471 (722)
T ss_pred cceEEEEECCccCCCCCccCCCeEEEEEcCcCHHHHHHHHHHHHhcccccc-----------CCCCcEEEEEEECCHHHh
Confidence 125899999999886666788999999999999999999999986432110 134789999999999999
Q ss_pred hhHHHHHHHHhcc-CCCCeEEEEEEEecccCCCC---------------------hhH-------H--H---H-------
Q 042007 724 EWFKGVMDDIADH-DDKNVIEMHNYLTSVYEEGD---------------------ARS-------A--L---I------- 762 (844)
Q Consensus 724 ~wf~~~L~~l~~~-~~~~~l~i~~ylT~~~~~~d---------------------~~~-------~--~---~------- 762 (844)
.|+.++..++.+. ....++++++|+|++..+.. .+. . + +
T Consensus 472 ~~~del~~~l~~~~~~~~~lkl~iyVTRE~~~~~rl~~~i~~~~~~~~~~~~~~~~~~~i~G~~~~lw~~~~~~~s~~~f 551 (722)
T PLN02844 472 CLLNPISSLLLNQSSNQLNLKLKVFVTQEEKPNATLRELLNQFSQVQTVNFSTKCSRYAIHGLESFLWMAAMVALTSITF 551 (722)
T ss_pred hhHHHHHHHhHHhHHHhcCceEEEEECCCCCCCCchhhHhhccchhhhcCCCCCCCceEEeCCCchHHHHHHHHHHHHHH
Confidence 8887765544321 12247899999998654321 000 0 0 0
Q ss_pred ----HHHH------Hhhh--------------hcC------------------------------------Cccccc---
Q 042007 763 ----AMVQ------KLQH--------------AKN------------------------------------GVDIVS--- 779 (844)
Q Consensus 763 ----~~~~------~~~~--------------~~~------------------------------------~~d~~s--- 779 (844)
...+ +-++ +++ +.+..+
T Consensus 552 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 631 (722)
T PLN02844 552 LVFLIGLNHIFIPSEHKSHSGVKMAASGEMKTAKEKTPSWVVDLLLIVSFIIAITCSTFVAIILRWRRLKKEIPRVSQKQ 631 (722)
T ss_pred HHHHHHHheEEeccccccccchhcccccccccccCCCchHHHHHHHHHHHHHHheecceEeEeeeccccccCCccccccc
Confidence 0000 0000 000 000000
Q ss_pred -----------c----Cccccccc-CCChHHHHHHHHhhCCCCcEEEEEeCChhHHHHHHHHHHhhcC-----C---CCc
Q 042007 780 -----------E----SRIKTHFA-RPNWRKVFGQLATDHESSRIGVFYCGSATLTKTLKELCLEFSL-----E---SPT 835 (844)
Q Consensus 780 -----------g----~~~~~~~g-RPd~~~v~~~~~~~~~~~~v~V~~CGP~~m~~~vr~~~~~~~~-----~---~~~ 835 (844)
+ ....+|+| |||++++++.+.++..+.+|||.+|||++|.++|.+.|+..+. . .++
T Consensus 632 ~~~~~~~~~~~~~~~~~~~~~~~g~rp~~~~i~~~~~~~~~~~~vgvlv~gp~~~~~~va~~~~~~~~~~~~~~~~~~~~ 711 (722)
T PLN02844 632 GIKPEEGSMEKRGPVLEEHEIHFGGRPNFQDIFSKFPKETRGSDIGVLVCGPETMKESVASMCRLKSQCFNVGDDGKRKM 711 (722)
T ss_pred cCCCCCccccccccccccceeecCCCCCHHHHHHHhhhhccCCceeEEEeCchHHHHHHHHHHHhcccccccccccccCC
Confidence 0 11356787 9999999999999999999999999999999999999998665 1 257
Q ss_pred eEEEEecCC
Q 042007 836 RFDFHKENF 844 (844)
Q Consensus 836 ~~~~h~E~F 844 (844)
.|+||.-+|
T Consensus 712 ~~~~hs~~f 720 (722)
T PLN02844 712 YFSFHSLNF 720 (722)
T ss_pred ceeeeeccc
Confidence 899999887
No 4
>PLN02292 ferric-chelate reductase
Probab=100.00 E-value=1.7e-59 Score=547.51 Aligned_cols=339 Identities=21% Similarity=0.358 Sum_probs=270.6
Q ss_pred eeeccccccchhhhHHHHHHHhhh-hhhhhccccccccccCcchhhhHHHHHHHHHHHHHHHHHhhhhccccccccCCch
Q 042007 328 CFAKGCGETLKFNMALILLTVCRR-SLTKLRSTFLHKIIPFDDNLNFHKLIALGIAIGSIVHTLFHLLCNYPKLSSCRPE 406 (844)
Q Consensus 328 ~~ar~~~~~~~~~~~lill~~~Rn-~l~~L~~~~~~~~v~~d~~~~fHr~ig~~~~~~~~vH~~~~~~~~f~~~~~~~~~ 406 (844)
.+|+|+|.++.+++|++++|++|| .+.||+| +|||+.+.||||+|+++++++++|+++|++. +. . .+
T Consensus 168 ~vg~R~Gila~~~lpll~l~~~Rnn~L~~ltG------~s~e~f~~yHRWlGrii~ll~~lH~i~y~i~-~~--~---~~ 235 (702)
T PLN02292 168 SIAVRLGLVGNICLAFLFYPVARGSSLLAAVG------LTSESSIKYHIWLGHLVMTLFTSHGLCYIIY-WI--S---MN 235 (702)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHC------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH--h---cC
Confidence 489999999999999999999999 6899976 5889999999999999999999999999842 11 0 11
Q ss_pred hhhhhhhcccCCCCCceeeeccccchhHHHHHHHHHHHHHHhhhhhhhhccccccccccccccchhhHHHHHHHHHHHHH
Q 042007 407 KFMYLLGPALNYHQPTYYDLMIHTVGYTGVLMLVIMAISFTLATHSFRRNVIKLPWIFHRFAGFNSFWYAHHLLVLAYVL 486 (844)
Q Consensus 407 ~~~~~~~~~~~~~~p~~~~~~~~~~~~tG~~~~v~l~i~~~~s~~~~Rr~~~~~~~~~~~~~~ye~F~~~H~l~~~~~v~ 486 (844)
.+ ..+. .| ......+++|+++++++++|+++|++++||++ ||+|+++|+++++++++
T Consensus 236 ~~-~~~~---------~w-~~~~~~~i~G~iAlv~~~il~v~Sl~~iRR~~------------YE~F~~~HiL~~v~~v~ 292 (702)
T PLN02292 236 QV-SQML---------EW-DRTGVSNLAGEIALVAGLVMWATTYPKIRRRF------------FEVFFYTHYLYIVFMLF 292 (702)
T ss_pred ch-hhhh---------hc-cccchHHHHHHHHHHHHHHHHHHhhHHHHhcc------------cHhHHHHHHHHHHHHee
Confidence 11 0010 11 12234568999999999999999999999998 99999999999887777
Q ss_pred HHHHhccccccCCcCCcceeEeeeecchhhehhhhhHhhhcccccEEEEEEEEecCCEEEEEEeCCCCCccCCCcEEEEE
Q 042007 487 LFMHGFFLIFDKPWYDKTTWIYIFFPVLFYANERFLAKFHDLNHKVEVIKAVIYTGNVLALYMTKPPGFKYQSGMYLFVK 566 (844)
Q Consensus 487 l~~H~~~~~~~~~~~~~~~w~~~~~~~~l~~~dr~~R~~r~~~~~~~i~~v~~~~~~v~~l~i~~p~~~~~~pGQyv~l~ 566 (844)
+++|.... .+.|+++++++|++||++|.+|.+ .++++++++.++++++++++++|+.++|+||||+||+
T Consensus 293 ~~~H~~~~----------~~~~~~~~i~l~~~DR~lR~~r~~-~~~~Iv~~~~l~~dvv~L~~~~~~~~~~~PGQ~vfL~ 361 (702)
T PLN02292 293 FVFHVGIS----------FALISFPGFYIFLVDRFLRFLQSR-NNVKLVSARVLPCDTVELNFSKNPMLMYSPTSIMFVN 361 (702)
T ss_pred eehhhhhH----------HHHHHHHHHHHHHHHHHHHHHHhh-cceEEEEEEEcCCCEEEEEEEcCCCCCcCCCCeEEEE
Confidence 88996421 111334567899999999999875 6889999999999999999999988999999999999
Q ss_pred cCCCCCCCccCcccccCCC--CCceEEEEEecCCchHHHHHHHHhhcCCCCCCCCCCCcchhhhhhhhhccccccccccC
Q 042007 567 CPDLSPFEWHPFSITSAPG--DYYLSVHIRTLGDWTTELKQRFEKVCEAPAPAKPNRGNLMRMETKSAANNANFEQIQAS 644 (844)
Q Consensus 567 ~p~~s~~e~HPFTI~s~p~--~~~l~l~Ir~~G~~T~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 644 (844)
+|..+.+|+|||||+|+|+ ++.++++||+.|+||++|.+.+. .|+. ..
T Consensus 362 ~P~~s~~q~HPFTIaSsp~~~~~~l~l~IK~~G~~T~~L~~~l~----------~gd~--------------------i~ 411 (702)
T PLN02292 362 IPSISKLQWHPFTITSSSKLEPEKLSVMIKSQGKWSTKLYHMLS----------SSDQ--------------------ID 411 (702)
T ss_pred EccCCccceeeeEeeccCCCCCCEEEEEEEcCCchhHHHHHhCC----------CCCc--------------------cc
Confidence 9998899999999999874 57899999999999999998762 2210 01
Q ss_pred cCEEEEeCccCCCCCCCCCCCeEEEEEcccchhchHHHHHHHHHHhhhcCcchhhhcCCCCCCCcEEEEEEEeCCCChhh
Q 042007 645 FPKILIKGPYGAPAQDYKNYDILLLIGLGIGATPFISIIKDLLNHIKSHERDTEFLENGFKKGPERAYFYWVTREQGSFE 724 (844)
Q Consensus 645 ~~~v~IdGPyG~~~~~~~~~~~vvlVagGiGITp~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~~v~l~W~~R~~~~~~ 724 (844)
..+|.|+||||.+..+...++++++||||+||||++|++++++++..... ...++++|+|++|+.+++.
T Consensus 412 ~~~V~VeGPYG~~~~~~~~~~~vvlIAGGiGITP~lsil~~L~~~~~~~~-----------~~~~~V~LIw~vR~~~Dl~ 480 (702)
T PLN02292 412 RLAVSVEGPYGPASTDFLRHESLVMVSGGSGITPFISIIRDLIYTSSTET-----------CKIPKITLICAFKNSSDLS 480 (702)
T ss_pred cceEEEECCccCCccccccCCcEEEEEeccCHHHHHHHHHHHHhcccccc-----------CCCCcEEEEEEECCHHHhh
Confidence 25899999999876566678999999999999999999999987532110 1247899999999999875
Q ss_pred hHHHHHHHH---hccCCCCeEEEEEEEecccC
Q 042007 725 WFKGVMDDI---ADHDDKNVIEMHNYLTSVYE 753 (844)
Q Consensus 725 wf~~~L~~l---~~~~~~~~l~i~~ylT~~~~ 753 (844)
|..+...++ .+.....++++++|+|++.+
T Consensus 481 ~ld~l~~e~~~~~~l~~~~~~~i~iyvTr~~~ 512 (702)
T PLN02292 481 MLDLILPTSGLETELSSFIDIQIKAFVTREKE 512 (702)
T ss_pred HHHHHHHhhhhHHHHhhcCCceEEEEEeCCCC
Confidence 543333333 22223458899999998644
No 5
>COG4097 Predicted ferric reductase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.4e-41 Score=352.23 Aligned_cols=378 Identities=20% Similarity=0.287 Sum_probs=255.5
Q ss_pred ccchhhhHHHHHHHhhhhhhhhccccccccccCcchhhhHHHHHHHHHHHHHHHHHhhhhccccccccCCchhhhhhhhc
Q 042007 335 ETLKFNMALILLTVCRRSLTKLRSTFLHKIIPFDDNLNFHKLIALGIAIGSIVHTLFHLLCNYPKLSSCRPEKFMYLLGP 414 (844)
Q Consensus 335 ~~~~~~~~lill~~~Rn~l~~L~~~~~~~~v~~d~~~~fHr~ig~~~~~~~~vH~~~~~~~~f~~~~~~~~~~~~~~~~~ 414 (844)
.+....|+++++.+.|-. |+..| +-+.|+.+.+|||+|..++++.+.|-+...+.++- . ... +
T Consensus 46 ~iaL~~msl~~~LA~R~~--~iE~~----~~GlD~~Y~~HK~~sIlailL~l~H~~~~~~g~w~--~-~~~------l-- 108 (438)
T COG4097 46 FIALALMSLIFLLATRLP--LIEAW----FNGLDKIYRFHKYTSILAILLLLAHNFILFIGNWL--T-LQL------L-- 108 (438)
T ss_pred HHHHHHHHHHHHHHhchH--HHhhh----hhhhhHHhHHHHHHHHHHHHHHHHHHHHHHcCcch--h-ccc------c--
Confidence 355678899999999963 33332 23689999999999999999999999886533321 0 000 0
Q ss_pred ccCCCCC---c---eeeeccccchhHHHHHHHHHHHHHHhhhhhhhhccccccccccccccchhhHHHHHHHHHHHHHHH
Q 042007 415 ALNYHQP---T---YYDLMIHTVGYTGVLMLVIMAISFTLATHSFRRNVIKLPWIFHRFAGFNSFWYAHHLLVLAYVLLF 488 (844)
Q Consensus 415 ~~~~~~p---~---~~~~~~~~~~~tG~~~~v~l~i~~~~s~~~~Rr~~~~~~~~~~~~~~ye~F~~~H~l~~~~~v~l~ 488 (844)
.|. ..| + .|...+.+ |-++.-+++.+++ .+.-| . .++||.|.++|.+++++|++..
T Consensus 109 ~~k-~a~v~~~l~~~~~s~~el-G~~~~yi~~~lll---V~~l~-----~--------~i~Ye~WR~~H~lm~vvYilg~ 170 (438)
T COG4097 109 NFK-PAPVKPSLAGMWRSAKEL-GEWSAYIFIGLLL---VWRLW-----L--------NIGYENWRIAHRLMAVVYILGL 170 (438)
T ss_pred ccc-ccccchhhhhhhHHHHHH-HHHHHHHHHHHHH---HHHHH-----H--------hcCchhHHHHHHHHHHHHHHHH
Confidence 010 111 1 11111112 2222222222221 12111 1 2459999999999999999999
Q ss_pred HHhccccccCCcCCcce-eEee---eecchhhehhhhhHhhhcccccEEEEEEEEecCCEEEEEEeCCCCCccCCCcEEE
Q 042007 489 MHGFFLIFDKPWYDKTT-WIYI---FFPVLFYANERFLAKFHDLNHKVEVIKAVIYTGNVLALYMTKPPGFKYQSGMYLF 564 (844)
Q Consensus 489 ~H~~~~~~~~~~~~~~~-w~~~---~~~~~l~~~dr~~R~~r~~~~~~~i~~v~~~~~~v~~l~i~~p~~~~~~pGQyv~ 564 (844)
+|.....-...|..+.. |.-. +++...++.--..+..|++.+..+|+.+...+.++++++.....++-|+|||+.|
T Consensus 171 ~H~~~l~~~~~~s~~a~swl~~~~allG~l~~iysi~~y~~~s~~y~~~vt~~~r~~~~t~eit~~l~~~~~~qaGQFAf 250 (438)
T COG4097 171 LHSYGLLNYLYLSWPAVSWLVIAFALLGLLAAIYSIFGYFGRSFPYLGKVTAPQRGNVDTLEITIGLQGPWLYQAGQFAF 250 (438)
T ss_pred HHHHHhcchhHhhccHHHHHHHHHHHHHHHHHHHHHHHHhhcccccceEEechhhcCcchheeecccCCcccccCCceEE
Confidence 99875332222322222 3211 1122222233334445777788888888888888989888877778899999999
Q ss_pred EEcCCCC-CCCccCcccccCCCCCceEEEEEecCCchHHHHHHHHhhcCCCCCCCCCCCcchhhhhhhhhcccccccccc
Q 042007 565 VKCPDLS-PFEWHPFSITSAPGDYYLSVHIRTLGDWTTELKQRFEKVCEAPAPAKPNRGNLMRMETKSAANNANFEQIQA 643 (844)
Q Consensus 565 l~~p~~s-~~e~HPFTI~s~p~~~~l~l~Ir~~G~~T~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 643 (844)
|.|+.-. .+..|||||+++.+...+.|.||+.||+|+.|++.+ ++|
T Consensus 251 Lk~~~~~~~~~~HPFTIa~s~~~sel~FsIK~LGD~Tk~l~dnL----------k~G----------------------- 297 (438)
T COG4097 251 LKIEIEEFRMRPHPFTIACSHEGSELRFSIKALGDFTKTLKDNL----------KVG----------------------- 297 (438)
T ss_pred EEeccccccCCCCCeeeeeCCCCceEEEEehhhhhhhHHHHHhc----------cCC-----------------------
Confidence 9998753 467999999999888889999999999999999976 467
Q ss_pred CcCEEEEeCccCCCCCCCCCCC-eEEEEEcccchhchHHHHHHHHHHhhhcCcchhhhcCCCCCCCcEEEEEEEeCCCCh
Q 042007 644 SFPKILIKGPYGAPAQDYKNYD-ILLLIGLGIGATPFISIIKDLLNHIKSHERDTEFLENGFKKGPERAYFYWVTREQGS 722 (844)
Q Consensus 644 ~~~~v~IdGPyG~~~~~~~~~~-~vvlVagGiGITp~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~~v~l~W~~R~~~~ 722 (844)
.++.||||||.+.. ..+. +-|+|||||||||++|+++.+..+. ..+.|+|++++|+.++
T Consensus 298 --~k~~vdGPYG~F~~--~~g~~~QVWIAGGIGITPFis~l~~l~~~~----------------s~~~V~L~Y~~~n~e~ 357 (438)
T COG4097 298 --TKLEVDGPYGKFDF--ERGLNTQVWIAGGIGITPFISMLFTLAERK----------------SDPPVHLFYCSRNWEE 357 (438)
T ss_pred --ceEEEecCcceeec--ccCCcccEEEecCcCcchHHHHHHhhcccc----------------cCCceEEEEEecCCch
Confidence 68999999999853 3443 4899999999999999999987632 3578999999999999
Q ss_pred hhhHHHHHHHHhccCCCCeEEEEEEEecccCCCChhHHHHHHHHHhhhhcCCccccccCcccccccCCChHHHHHHHHhh
Q 042007 723 FEWFKGVMDDIADHDDKNVIEMHNYLTSVYEEGDARSALIAMVQKLQHAKNGVDIVSESRIKTHFARPNWRKVFGQLATD 802 (844)
Q Consensus 723 ~~wf~~~L~~l~~~~~~~~l~i~~ylT~~~~~~d~~~~~~~~~~~~~~~~~~~d~~sg~~~~~~~gRPd~~~v~~~~~~~ 802 (844)
. -|.++|+++++.. +++++|+--++. | |--|.+++-+. .+
T Consensus 358 ~-~y~~eLr~~~qkl--~~~~lHiiDSs~----~-------------------------------g~l~~e~ler~--~~ 397 (438)
T COG4097 358 A-LYAEELRALAQKL--PNVVLHIIDSSK----D-------------------------------GYLDQEDLERY--PD 397 (438)
T ss_pred h-HHHHHHHHHHhcC--CCeEEEEecCCC----C-------------------------------CccCHHHhhcc--cc
Confidence 6 7888999998743 467777622211 1 11111111111 00
Q ss_pred CCCCcEEEEEeCChhHHHHHHHHHHhhcCCCCceEEEEecCC
Q 042007 803 HESSRIGVFYCGSATLTKTLKELCLEFSLESPTRFDFHKENF 844 (844)
Q Consensus 803 ~~~~~v~V~~CGP~~m~~~vr~~~~~~~~~~~~~~~~h~E~F 844 (844)
+ +..-.||+|||++|++++|+..++.+-+ .+ +||.|.|
T Consensus 398 ~-~~~~sv~fCGP~~m~dsL~r~l~~~~~~--i~-~~h~E~F 435 (438)
T COG4097 398 R-PRTRSVFFCGPIKMMDSLRRDLKKQNVP--IT-NFHYEHF 435 (438)
T ss_pred c-cCcceEEEEcCHHHHHHHHHHHHHcCCC--HH-HHHHHhc
Confidence 1 1123799999999999999999886543 12 8999987
No 6
>cd06186 NOX_Duox_like_FAD_NADP NADPH oxidase (NOX) catalyzes the generation of reactive oxygen species (ROS) such as superoxide and hydrogen peroxide. ROS were originally identified as bactericidal agents in phagocytes, but are now also implicated in cell signaling and metabolism. NOX has a 6-alpha helix heme-binding transmembrane domain fused to a flavoprotein with the nucleotide binding domain located in the cytoplasm. Duox enzymes link a peroxidase domain to the NOX domain via a single transmembrane and EF-hand Ca2+ binding sites. The flavoprotein module has a ferredoxin like FAD/NADPH binding domain. In classical phagocytic NOX2, electron transfer occurs from NADPH to FAD to the heme of cytb to oxygen leading to superoxide formation.
Probab=100.00 E-value=2.8e-33 Score=289.31 Aligned_cols=205 Identities=30% Similarity=0.562 Sum_probs=165.5
Q ss_pred EEEEEec-CCEEEEEEeCCCCCccCCCcEEEEEcCCC-CCCCccCcccccCCCC--CceEEEEEecCCchHHHHHHHHhh
Q 042007 535 IKAVIYT-GNVLALYMTKPPGFKYQSGMYLFVKCPDL-SPFEWHPFSITSAPGD--YYLSVHIRTLGDWTTELKQRFEKV 610 (844)
Q Consensus 535 ~~v~~~~-~~v~~l~i~~p~~~~~~pGQyv~l~~p~~-s~~e~HPFTI~s~p~~--~~l~l~Ir~~G~~T~~L~~~~~~~ 610 (844)
++++.++ +++++|+++.|..+.|+||||++|++|.. +.+++|||||+|+|.+ +.++|+||..+|+|+++.+.+.+.
T Consensus 2 ~~~~~~~~~~~~~l~~~~~~~~~~~pGq~v~l~~~~~~~~~~~hpfsias~~~~~~~~i~~~vk~~~G~~t~~~~~~~~~ 81 (210)
T cd06186 2 ATVELLPDSDVIRLTIPKPKPFKWKPGQHVYLNFPSLLSFWQSHPFTIASSPEDEQDTLSLIIRAKKGFTTRLLRKALKS 81 (210)
T ss_pred eEEEEecCCCEEEEEEecCCCCccCCCCEEEEEeCCCCCCcccCCcEeeeCCCCCCCEEEEEEEecCChHHHHHHHHHhC
Confidence 4677888 99999999998889999999999999998 7899999999999976 899999999966666666654321
Q ss_pred cCCCCCCCCCCCcchhhhhhhhhccccccccccCcCEEEEeCccCCCCCCCCCCCeEEEEEcccchhchHHHHHHHHHHh
Q 042007 611 CEAPAPAKPNRGNLMRMETKSAANNANFEQIQASFPKILIKGPYGAPAQDYKNYDILLLIGLGIGATPFISIIKDLLNHI 690 (844)
Q Consensus 611 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IdGPyG~~~~~~~~~~~vvlVagGiGITp~lsil~~l~~~~ 690 (844)
.. .+ ...++.|+||||.+..+...++++||||||+||||++|++++++.+.
T Consensus 82 ~~------~~-----------------------~~~~v~v~GP~G~~~~~~~~~~~~vliagG~GItp~~s~l~~l~~~~ 132 (210)
T cd06186 82 PG------GG-----------------------VSLKVLVEGPYGSSSEDLLSYDNVLLVAGGSGITFVLPILRDLLRRS 132 (210)
T ss_pred cC------CC-----------------------ceeEEEEECCCCCCccChhhCCeEEEEeccccHhhhHHHHHHHHhhh
Confidence 00 01 12689999999998645668899999999999999999999998764
Q ss_pred hhcCcchhhhcCCCCCCCcEEEEEEEeCCCChhhhHHHHHHHHhccCCCCeEEEEEEEecccCCCChhHHHHHHHHHhhh
Q 042007 691 KSHERDTEFLENGFKKGPERAYFYWVTREQGSFEWFKGVMDDIADHDDKNVIEMHNYLTSVYEEGDARSALIAMVQKLQH 770 (844)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~~v~l~W~~R~~~~~~wf~~~L~~l~~~~~~~~l~i~~ylT~~~~~~d~~~~~~~~~~~~~~ 770 (844)
... ...++|+|+|++|+.+++.||.++|.+..+..... ++++|+|+
T Consensus 133 ~~~------------~~~~~v~l~w~~r~~~~~~~~~~~l~~~~~~~~~~--~~~i~~T~-------------------- 178 (210)
T cd06186 133 SKT------------SRTRRVKLVWVVRDREDLEWFLDELRAAQELEVDG--EIEIYVTR-------------------- 178 (210)
T ss_pred hcc------------CCccEEEEEEEECCHHHhHHHHHHHHhhhhccCCc--eEEEEEee--------------------
Confidence 210 13578999999999999999999997522221111 67777762
Q ss_pred hcCCccccccCcccccccCCChHHHHHHHHhhCCCCcEEEEEeCChhHHHHHHHHHHhhcCCCCceEEEEecCC
Q 042007 771 AKNGVDIVSESRIKTHFARPNWRKVFGQLATDHESSRIGVFYCGSATLTKTLKELCLEFSLESPTRFDFHKENF 844 (844)
Q Consensus 771 ~~~~~d~~sg~~~~~~~gRPd~~~v~~~~~~~~~~~~v~V~~CGP~~m~~~vr~~~~~~~~~~~~~~~~h~E~F 844 (844)
|++|||++|++++++.+.. +....+.||+|+|
T Consensus 179 ---------------------------------------v~~CGp~~~~~~~~~~~~~---~~~~~~~~~~e~f 210 (210)
T cd06186 179 ---------------------------------------VVVCGPPGLVDDVRNAVAK---KGGTGVEFHEESF 210 (210)
T ss_pred ---------------------------------------EEEECchhhccHHHHHHhh---cCCCceEEEeecC
Confidence 8999999999999999987 3567899999998
No 7
>cd06216 FNR_iron_sulfur_binding_2 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to for
Probab=99.96 E-value=1.2e-27 Score=253.16 Aligned_cols=233 Identities=18% Similarity=0.254 Sum_probs=179.4
Q ss_pred hhhhhHhhhc----ccccEEEEEEEEecCCEEEEEEeCCCC-CccCCCcEEEEEcCCCCCCCccCcccccCCC--CCceE
Q 042007 518 NERFLAKFHD----LNHKVEVIKAVIYTGNVLALYMTKPPG-FKYQSGMYLFVKCPDLSPFEWHPFSITSAPG--DYYLS 590 (844)
Q Consensus 518 ~dr~~R~~r~----~~~~~~i~~v~~~~~~v~~l~i~~p~~-~~~~pGQyv~l~~p~~s~~e~HPFTI~s~p~--~~~l~ 590 (844)
+||.+|.++. ....++|++++.+++++.++++..|.. ..|+||||+.|.+|..+...+|||||+|.|+ ++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~i~l~~~~~~~~~~pGQ~i~l~~~~~~~~~~r~ysi~s~~~~~~~~l~ 81 (243)
T cd06216 2 VDFYLELINPLWSARELRARVVAVRPETADMVTLTLRPNRGWPGHRAGQHVRLGVEIDGVRHWRSYSLSSSPTQEDGTIT 81 (243)
T ss_pred chhhhhhcCCCcccceeEEEEEEEEEcCCCcEEEEEecCCCCCCcCCCceEEEEEEECCeEEEEEEeccCCCcCCCCeEE
Confidence 5778887654 335678899999999999999997765 4799999999999765656789999999986 78899
Q ss_pred EEEEec--CCchHHHHHHHHhhcCCCCCCCCCCCcchhhhhhhhhccccccccccCcCEEEEeCccCCCCCCCCCCCeEE
Q 042007 591 VHIRTL--GDWTTELKQRFEKVCEAPAPAKPNRGNLMRMETKSAANNANFEQIQASFPKILIKGPYGAPAQDYKNYDILL 668 (844)
Q Consensus 591 l~Ir~~--G~~T~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IdGPyG~~~~~~~~~~~vv 668 (844)
|+||.. |.+|..|.+.+ ++| .++.|.||||.+..+...++++|
T Consensus 82 ~~ik~~~~G~~s~~l~~~~----------~~G-------------------------d~v~i~gP~G~f~l~~~~~~~~v 126 (243)
T cd06216 82 LTVKAQPDGLVSNWLVNHL----------APG-------------------------DVVELSQPQGDFVLPDPLPPRLL 126 (243)
T ss_pred EEEEEcCCCcchhHHHhcC----------CCC-------------------------CEEEEECCceeeecCCCCCCCEE
Confidence 999998 88999997643 355 67999999998754433478999
Q ss_pred EEEcccchhchHHHHHHHHHHhhhcCcchhhhcCCCCCCCcEEEEEEEeCCCChhhhHHHHHHHHhccCCCCeEEEEEEE
Q 042007 669 LIGLGIGATPFISIIKDLLNHIKSHERDTEFLENGFKKGPERAYFYWVTREQGSFEWFKGVMDDIADHDDKNVIEMHNYL 748 (844)
Q Consensus 669 lVagGiGITp~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~~v~l~W~~R~~~~~~wf~~~L~~l~~~~~~~~l~i~~yl 748 (844)
+||||+||||++|+++++.... ..++++++|++|+.+++ ++.++|+++++.. .+++++.++
T Consensus 127 ~iagG~Giap~~s~l~~~~~~~----------------~~~~i~l~~~~r~~~~~-~~~~el~~l~~~~--~~~~~~~~~ 187 (243)
T cd06216 127 LIAAGSGITPVMSMLRTLLARG----------------PTADVVLLYYARTREDV-IFADELRALAAQH--PNLRLHLLY 187 (243)
T ss_pred EEecCccHhHHHHHHHHHHhcC----------------CCCCEEEEEEcCChhhh-HHHHHHHHHHHhC--CCeEEEEEE
Confidence 9999999999999999987542 24679999999999886 8889998887532 357777777
Q ss_pred ecccCCCChhHHHHHHHHHhhhhcCCccccccCcccccccCCChHHHHHHHHhhCCCCcEEEEEeCChhHHHHHHHHHHh
Q 042007 749 TSVYEEGDARSALIAMVQKLQHAKNGVDIVSESRIKTHFARPNWRKVFGQLATDHESSRIGVFYCGSATLTKTLKELCLE 828 (844)
Q Consensus 749 T~~~~~~d~~~~~~~~~~~~~~~~~~~d~~sg~~~~~~~gRPd~~~v~~~~~~~~~~~~v~V~~CGP~~m~~~vr~~~~~ 828 (844)
|+. +. .||.+.. .+++..... ....||+|||++|++++++.+.+
T Consensus 188 s~~---~~------------------------------~g~~~~~-~l~~~~~~~--~~~~vyvcGp~~m~~~~~~~l~~ 231 (243)
T cd06216 188 TRE---EL------------------------------DGRLSAA-HLDAVVPDL--ADRQVYACGPPGFLDAAEELLEA 231 (243)
T ss_pred cCC---cc------------------------------CCCCCHH-HHHHhccCc--ccCeEEEECCHHHHHHHHHHHHH
Confidence 642 00 1444422 233332211 23489999999999999999987
Q ss_pred hcCCCCceEEEEecCC
Q 042007 829 FSLESPTRFDFHKENF 844 (844)
Q Consensus 829 ~~~~~~~~~~~h~E~F 844 (844)
.+- . -.+|.|.|
T Consensus 232 ~Gv---~-~~i~~e~F 243 (243)
T cd06216 232 AGL---A-DRLHTERF 243 (243)
T ss_pred CCC---c-cceeeccC
Confidence 543 3 46888887
No 8
>cd06195 FNR1 Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.
Probab=99.96 E-value=1.4e-27 Score=252.16 Aligned_cols=228 Identities=20% Similarity=0.267 Sum_probs=171.7
Q ss_pred EEEEEEecCCEEEEEEeCCCCCccCCCcEEEEEcCCC-CCCCccCcccccCCCCCceEEEEEec--CCchHHHHHHHHhh
Q 042007 534 VIKAVIYTGNVLALYMTKPPGFKYQSGMYLFVKCPDL-SPFEWHPFSITSAPGDYYLSVHIRTL--GDWTTELKQRFEKV 610 (844)
Q Consensus 534 i~~v~~~~~~v~~l~i~~p~~~~~~pGQyv~l~~p~~-s~~e~HPFTI~s~p~~~~l~l~Ir~~--G~~T~~L~~~~~~~ 610 (844)
|++++.+++++++++++.|..+.|+||||+.|++|.. +...+|||||+|.|+++.++|+||.. |.+|+.|.++
T Consensus 2 v~~~~~~t~~~~~~~l~~~~~~~~~pGQ~v~l~~~~~~~~~~~R~ySi~s~~~~~~i~~~i~~~~~G~~s~~l~~l---- 77 (241)
T cd06195 2 VLKRRDWTDDLFSFRVTRDIPFRFQAGQFTKLGLPNDDGKLVRRAYSIASAPYEENLEFYIILVPDGPLTPRLFKL---- 77 (241)
T ss_pred eEEEEEcCCCEEEEEEcCCCCCccCCCCeEEEeccCCCCCeeeecccccCCCCCCeEEEEEEEecCCCCchHHhcC----
Confidence 5678888999999999988778899999999999976 56788999999999888999999976 8899988753
Q ss_pred cCCCCCCCCCCCcchhhhhhhhhccccccccccCcCEEEEe-CccCCCCCCCC-CCCeEEEEEcccchhchHHHHHHHHH
Q 042007 611 CEAPAPAKPNRGNLMRMETKSAANNANFEQIQASFPKILIK-GPYGAPAQDYK-NYDILLLIGLGIGATPFISIIKDLLN 688 (844)
Q Consensus 611 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Id-GPyG~~~~~~~-~~~~vvlVagGiGITp~lsil~~l~~ 688 (844)
.+| ..+.+. ||||.+..+.. ..+++||||||+||||++++++++..
T Consensus 78 -------~~G-------------------------d~v~v~~gP~G~f~~~~~~~~~~~vlIagGtGiaP~~~~l~~~~~ 125 (241)
T cd06195 78 -------KPG-------------------------DTIYVGKKPTGFLTLDEVPPGKRLWLLATGTGIAPFLSMLRDLEI 125 (241)
T ss_pred -------CCC-------------------------CEEEECcCCCCceeecCCCCCceEEEEeeccchhhHHHHHHHHHh
Confidence 356 679999 99999764333 46899999999999999999999875
Q ss_pred HhhhcCcchhhhcCCCCCCCcEEEEEEEeCCCChhhhHHHHHHHHhccCCCCeEEEEEEEecccCCCChhHHHHHHHHHh
Q 042007 689 HIKSHERDTEFLENGFKKGPERAYFYWVTREQGSFEWFKGVMDDIADHDDKNVIEMHNYLTSVYEEGDARSALIAMVQKL 768 (844)
Q Consensus 689 ~~~~~~~~~~~~~~~~~~~~~~v~l~W~~R~~~~~~wf~~~L~~l~~~~~~~~l~i~~ylT~~~~~~d~~~~~~~~~~~~ 768 (844)
.. ..++++|+|++|+.+++ +|.++|+++++.. ...++++.++|+......
T Consensus 126 ~~----------------~~~~v~l~~~~r~~~d~-~~~~el~~l~~~~-~~~~~~~~~~s~~~~~~~------------ 175 (241)
T cd06195 126 WE----------------RFDKIVLVHGVRYAEEL-AYQDEIEALAKQY-NGKFRYVPIVSREKENGA------------ 175 (241)
T ss_pred hC----------------CCCcEEEEEccCCHHHh-hhHHHHHHHHhhc-CCCEEEEEEECcCCccCC------------
Confidence 32 34689999999999998 7899999887641 236778777775422100
Q ss_pred hhhcCCccccccCcccccccCCChH---HHHHHHHhhC-CCCcEEEEEeCChhHHHHHHHHHHhhcCCC---CceEEEEe
Q 042007 769 QHAKNGVDIVSESRIKTHFARPNWR---KVFGQLATDH-ESSRIGVFYCGSATLTKTLKELCLEFSLES---PTRFDFHK 841 (844)
Q Consensus 769 ~~~~~~~d~~sg~~~~~~~gRPd~~---~v~~~~~~~~-~~~~v~V~~CGP~~m~~~vr~~~~~~~~~~---~~~~~~h~ 841 (844)
..||.+-. +.+.+..... ..+...||+|||++|++++++.+.+.+.+. ...-.+|.
T Consensus 176 -----------------~~g~v~~~l~~~~l~~~~~~~~~~~~~~vyiCGp~~m~~~~~~~l~~~G~~~~~~~~~~~~~~ 238 (241)
T cd06195 176 -----------------LTGRIPDLIESGELEEHAGLPLDPETSHVMLCGNPQMIDDTQELLKEKGFSKNHRRKPGNITV 238 (241)
T ss_pred -----------------CceEhHHhhhhchhhHhhCCCCCcccCEEEEeCCHHHHHHHHHHHHHcCCCccccCCCceEEE
Confidence 01232210 1111111111 113457999999999999999998875431 12378999
Q ss_pred cCC
Q 042007 842 ENF 844 (844)
Q Consensus 842 E~F 844 (844)
|.|
T Consensus 239 E~~ 241 (241)
T cd06195 239 EKY 241 (241)
T ss_pred ecC
Confidence 988
No 9
>cd06189 flavin_oxioreductase NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins. Structurally similar to ferredoxin reductases, but with only 15% sequence identity, flavin reductases reduce FAD, FMN, or riboflavin via NAD(P)H. Flavin is used as a substrate, rather than a tightly bound prosthetic group as in flavoenzymes; weaker binding is due to the absence of a binding site for the AMP moeity of FAD.
Probab=99.96 E-value=1.7e-27 Score=248.62 Aligned_cols=220 Identities=23% Similarity=0.368 Sum_probs=167.1
Q ss_pred EEEEEEEecCCEEEEEEeCCCCCccCCCcEEEEEcCCCCCCCccCcccccCCC-CCceEEEEEec--CCchHHHHHHHHh
Q 042007 533 EVIKAVIYTGNVLALYMTKPPGFKYQSGMYLFVKCPDLSPFEWHPFSITSAPG-DYYLSVHIRTL--GDWTTELKQRFEK 609 (844)
Q Consensus 533 ~i~~v~~~~~~v~~l~i~~p~~~~~~pGQyv~l~~p~~s~~e~HPFTI~s~p~-~~~l~l~Ir~~--G~~T~~L~~~~~~ 609 (844)
+|++++.++++++++++..|..++|+||||+.|.+|.. ++|||||+|.|+ ++.++++||.. |.+|+.|.+.+
T Consensus 2 ~v~~~~~~t~~~~~l~l~~~~~~~~~pGQ~v~l~~~~~---~~r~ySi~s~~~~~~~l~~~vk~~~~G~~s~~l~~~l-- 76 (224)
T cd06189 2 KVESIEPLNDDVYRVRLKPPAPLDFLAGQYLDLLLDDG---DKRPFSIASAPHEDGEIELHIRAVPGGSFSDYVFEEL-- 76 (224)
T ss_pred EEEEEEeCCCceEEEEEecCCCcccCCCCEEEEEcCCC---CceeeecccCCCCCCeEEEEEEecCCCccHHHHHHhc--
Confidence 57788889999999999988788999999999999864 589999999997 68899999998 78999998744
Q ss_pred hcCCCCCCCCCCCcchhhhhhhhhccccccccccCcCEEEEeCccCCCCCCCCCCCeEEEEEcccchhchHHHHHHHHHH
Q 042007 610 VCEAPAPAKPNRGNLMRMETKSAANNANFEQIQASFPKILIKGPYGAPAQDYKNYDILLLIGLGIGATPFISIIKDLLNH 689 (844)
Q Consensus 610 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IdGPyG~~~~~~~~~~~vvlVagGiGITp~lsil~~l~~~ 689 (844)
++| .++.|.||||.+......++++||||||+||||++|++++++..
T Consensus 77 --------~~G-------------------------~~v~i~gP~G~~~~~~~~~~~ivliagG~GiaP~~~~l~~l~~~ 123 (224)
T cd06189 77 --------KEN-------------------------GLVRIEGPLGDFFLREDSDRPLILIAGGTGFAPIKSILEHLLAQ 123 (224)
T ss_pred --------cCC-------------------------CEEEEecCCccEEeccCCCCCEEEEecCcCHHHHHHHHHHHHhc
Confidence 356 57999999998865434578999999999999999999999865
Q ss_pred hhhcCcchhhhcCCCCCCCcEEEEEEEeCCCChhhhHHHHHHHHhccCCCCeEEEEEEEecccCCCChhHHHHHHHHHhh
Q 042007 690 IKSHERDTEFLENGFKKGPERAYFYWVTREQGSFEWFKGVMDDIADHDDKNVIEMHNYLTSVYEEGDARSALIAMVQKLQ 769 (844)
Q Consensus 690 ~~~~~~~~~~~~~~~~~~~~~v~l~W~~R~~~~~~wf~~~L~~l~~~~~~~~l~i~~ylT~~~~~~d~~~~~~~~~~~~~ 769 (844)
. ..++++|+|++|+.+++ ++.++|+++++.. .++.++.++++..+...
T Consensus 124 ~----------------~~~~v~l~~~~r~~~~~-~~~~~l~~l~~~~--~~~~~~~~~s~~~~~~~------------- 171 (224)
T cd06189 124 G----------------SKRPIHLYWGARTEEDL-YLDELLEAWAEAH--PNFTYVPVLSEPEEGWQ------------- 171 (224)
T ss_pred C----------------CCCCEEEEEecCChhhc-cCHHHHHHHHHhC--CCeEEEEEeCCCCcCCc-------------
Confidence 2 24689999999999987 6788888887643 35777766665321100
Q ss_pred hhcCCccccccCcccccccCCChHHHHHHHHhhCCCCcEEEEEeCChhHHHHHHHHHHhhcCCCCceEEEEecCC
Q 042007 770 HAKNGVDIVSESRIKTHFARPNWRKVFGQLATDHESSRIGVFYCGSATLTKTLKELCLEFSLESPTRFDFHKENF 844 (844)
Q Consensus 770 ~~~~~~d~~sg~~~~~~~gRPd~~~v~~~~~~~~~~~~v~V~~CGP~~m~~~vr~~~~~~~~~~~~~~~~h~E~F 844 (844)
| ..|+.+ +.+.+... ......||+|||++|++++++.+.+.+. ..-.+|.|.|
T Consensus 172 ----------g-----~~g~v~-~~l~~~~~---~~~~~~v~vCGp~~m~~~~~~~l~~~G~---~~~~i~~e~f 224 (224)
T cd06189 172 ----------G-----RTGLVH-EAVLEDFP---DLSDFDVYACGSPEMVYAARDDFVEKGL---PEENFFSDAF 224 (224)
T ss_pred ----------c-----ccccHH-HHHHhhcc---CccccEEEEECCHHHHHHHHHHHHHcCC---CHHHcccCCC
Confidence 0 001111 11111111 1123579999999999999999988643 3456788887
No 10
>cd06198 FNR_like_3 NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) domain, which varies in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=99.95 E-value=2.8e-27 Score=245.67 Aligned_cols=207 Identities=23% Similarity=0.403 Sum_probs=154.5
Q ss_pred CCEEEEEEeCCCC-CccCCCcEEEEEcCCCCCCCccCcccccCCCC-CceEEEEEecCCchHHHHHHHHhhcCCCCCCCC
Q 042007 542 GNVLALYMTKPPG-FKYQSGMYLFVKCPDLSPFEWHPFSITSAPGD-YYLSVHIRTLGDWTTELKQRFEKVCEAPAPAKP 619 (844)
Q Consensus 542 ~~v~~l~i~~p~~-~~~~pGQyv~l~~p~~s~~e~HPFTI~s~p~~-~~l~l~Ir~~G~~T~~L~~~~~~~~~~~~~~~~ 619 (844)
.++.+|++..+.. +.|+|||||.|.+|..+.+++|||||+|.|++ +.++|+||..|++|+.|.+.+ ++
T Consensus 7 ~~~~~i~l~~~~~~~~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~~~~~l~l~vk~~G~~t~~l~~~l----------~~ 76 (216)
T cd06198 7 RPTTTLTLEPRGPALGHRAGQFAFLRFDASGWEEPHPFTISSAPDPDGRLRFTIKALGDYTRRLAERL----------KP 76 (216)
T ss_pred cceEEEEEeeCCCCCCcCCCCEEEEEeCCCCCCCCCCcEEecCCCCCCeEEEEEEeCChHHHHHHHhC----------CC
Confidence 3577888876655 78999999999998766689999999999876 599999999999999998543 35
Q ss_pred CCCcchhhhhhhhhccccccccccCcCEEEEeCccCCCCCCCCCCCeEEEEEcccchhchHHHHHHHHHHhhhcCcchhh
Q 042007 620 NRGNLMRMETKSAANNANFEQIQASFPKILIKGPYGAPAQDYKNYDILLLIGLGIGATPFISIIKDLLNHIKSHERDTEF 699 (844)
Q Consensus 620 g~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IdGPyG~~~~~~~~~~~vvlVagGiGITp~lsil~~l~~~~~~~~~~~~~ 699 (844)
| .++.|.||||.+..+. .++++||||||+||||++|+++++....
T Consensus 77 G-------------------------~~v~i~gP~G~~~~~~-~~~~~vlia~GtGiap~~~~l~~~~~~~--------- 121 (216)
T cd06198 77 G-------------------------TRVTVEGPYGRFTFDD-RRARQIWIAGGIGITPFLALLEALAARG--------- 121 (216)
T ss_pred C-------------------------CEEEEECCCCCCcccc-cCceEEEEccccCHHHHHHHHHHHHhcC---------
Confidence 5 6799999999976433 3789999999999999999999987642
Q ss_pred hcCCCCCCCcEEEEEEEeCCCChhhhHHHHHHHHhccCCCCeEEEEEEEecccCCCChhHHHHHHHHHhhhhcCCccccc
Q 042007 700 LENGFKKGPERAYFYWVTREQGSFEWFKGVMDDIADHDDKNVIEMHNYLTSVYEEGDARSALIAMVQKLQHAKNGVDIVS 779 (844)
Q Consensus 700 ~~~~~~~~~~~v~l~W~~R~~~~~~wf~~~L~~l~~~~~~~~l~i~~ylT~~~~~~d~~~~~~~~~~~~~~~~~~~d~~s 779 (844)
..++++++|++|+.+++ +|.++|+++.+.. +++++...+...
T Consensus 122 -------~~~~v~l~~~~r~~~~~-~~~~~l~~l~~~~---~~~~~~~~~~~~--------------------------- 163 (216)
T cd06198 122 -------DARPVTLFYCVRDPEDA-VFLDELRALAAAA---GVVLHVIDSPSD--------------------------- 163 (216)
T ss_pred -------CCceEEEEEEECCHHHh-hhHHHHHHHHHhc---CeEEEEEeCCCC---------------------------
Confidence 24689999999999986 7888898886542 455554333211
Q ss_pred cCcccccccCCChHHHHHHHHhhCCCCcEEEEEeCChhHHHHHHHHHHhhcCCCCceEEEEecCC
Q 042007 780 ESRIKTHFARPNWRKVFGQLATDHESSRIGVFYCGSATLTKTLKELCLEFSLESPTRFDFHKENF 844 (844)
Q Consensus 780 g~~~~~~~gRPd~~~v~~~~~~~~~~~~v~V~~CGP~~m~~~vr~~~~~~~~~~~~~~~~h~E~F 844 (844)
++.+...++.... .+.....||+|||++|++++++.+.+.+- ..-.+|.|.|
T Consensus 164 --------~~~~~~~~~~~~~--~~~~~~~vyicGp~~m~~~v~~~l~~~Gv---~~~~I~~E~f 215 (216)
T cd06198 164 --------GRLTLEQLVRALV--PDLADADVWFCGPPGMADALEKGLRALGV---PARRFHYERF 215 (216)
T ss_pred --------cccchhhhhhhcC--CCcCCCeEEEECcHHHHHHHHHHHHHcCC---ChHhcchhhc
Confidence 1111111111111 11234579999999999999999988543 3446777876
No 11
>cd06197 FNR_like_2 FAD/NAD(P) binding domain of ferredoxin reductase-like proteins. Ferredoxin reductase (FNR) was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and have a variety of physiological functions in a variety of organisms including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal moeity
Probab=99.95 E-value=2.7e-27 Score=246.05 Aligned_cols=191 Identities=19% Similarity=0.284 Sum_probs=147.5
Q ss_pred EEEecCCEEEEEEeCCCC---CccCCCcEEEEEcCCCC----------------CCCccCcccccCCCC----CceEEEE
Q 042007 537 AVIYTGNVLALYMTKPPG---FKYQSGMYLFVKCPDLS----------------PFEWHPFSITSAPGD----YYLSVHI 593 (844)
Q Consensus 537 v~~~~~~v~~l~i~~p~~---~~~~pGQyv~l~~p~~s----------------~~e~HPFTI~s~p~~----~~l~l~I 593 (844)
.+.++++|.++++..|.+ +.|+|||||.|.+|... ...+|||||+|+|++ +.++|+|
T Consensus 3 ~~~~s~~v~~~~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~~~~~~p~~~~~~~~R~ySias~p~~~~~~~~l~l~v 82 (220)
T cd06197 3 SEVITPTLTRFTFELSPPDVVGKWTPGQYITLDFSSELDSGYSHMADDDPQSLNDDFVRTFTVSSAPPHDPATDEFEITV 82 (220)
T ss_pred ceecccceeEEEEEecCCccccccCCCceEEEEccccccccccccccCCcchhcCCceeeEEeecCCccCCCCCEEEEEE
Confidence 466789999999998877 89999999999998631 134678999999964 6899999
Q ss_pred EecCCchHHHHHHHHhhcCCCCCCCCCCCcchhhhhhhhhccccccccccCcCEEEEeCccCCCCCCC---CCCCeEEEE
Q 042007 594 RTLGDWTTELKQRFEKVCEAPAPAKPNRGNLMRMETKSAANNANFEQIQASFPKILIKGPYGAPAQDY---KNYDILLLI 670 (844)
Q Consensus 594 r~~G~~T~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IdGPyG~~~~~~---~~~~~vvlV 670 (844)
|..|++|+.|.+...... ..| ..+.|+||||.+..+. ..++++|||
T Consensus 83 k~~G~~T~~L~~~~~~~~------~~G-------------------------~~v~v~gP~G~f~~~~~~~~~~~~illI 131 (220)
T cd06197 83 RKKGPVTGFLFQVARRLR------EQG-------------------------LEVPVLGVGGEFTLSLPGEGAERKMVWI 131 (220)
T ss_pred EeCCCCCHHHHHhhhccc------CCC-------------------------ceEEEEecCCcccCCcccccCCceEEEE
Confidence 999999999998753210 013 6799999999876432 357899999
Q ss_pred EcccchhchHHHHHHHHHHhhhcCcchhhhcCCCCCCCcEEEEEEEeCCCChhhhHHHHHHHHhccCCCCeEEEEEEEec
Q 042007 671 GLGIGATPFISIIKDLLNHIKSHERDTEFLENGFKKGPERAYFYWVTREQGSFEWFKGVMDDIADHDDKNVIEMHNYLTS 750 (844)
Q Consensus 671 agGiGITp~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~~v~l~W~~R~~~~~~wf~~~L~~l~~~~~~~~l~i~~ylT~ 750 (844)
||||||||++|++++++.... ..++|+|+|++|+.+++ +|.++|.++.+. .+.++.+.|
T Consensus 132 agG~GItP~~sil~~l~~~~~---------------~~~~v~l~~~~r~~~~~-~~~~el~~~~~~----~~~~~~~~~- 190 (220)
T cd06197 132 AGGVGITPFLAMLRAILSSRN---------------TTWDITLLWSLREDDLP-LVMDTLVRFPGL----PVSTTLFIT- 190 (220)
T ss_pred ecccchhhHHHHHHHHHhccc---------------CCCcEEEEEEecchhhH-HHHHHHHhccCC----ceEEEEEEe-
Confidence 999999999999999875421 24689999999999986 777777654321 122222111
Q ss_pred ccCCCChhHHHHHHHHHhhhhcCCccccccCcccccccCCChHHHHHHHHhhCCCCcEEEEEeCChhHHHHHHHHHHhhc
Q 042007 751 VYEEGDARSALIAMVQKLQHAKNGVDIVSESRIKTHFARPNWRKVFGQLATDHESSRIGVFYCGSATLTKTLKELCLEFS 830 (844)
Q Consensus 751 ~~~~~d~~~~~~~~~~~~~~~~~~~d~~sg~~~~~~~gRPd~~~v~~~~~~~~~~~~v~V~~CGP~~m~~~vr~~~~~~~ 830 (844)
+ .||+|||++|++++++.+.+.
T Consensus 191 -------------------------------------~--------------------~v~~CGP~~m~~~~~~~~~~~- 212 (220)
T cd06197 191 -------------------------------------S--------------------EVYLCGPPALEKAVLEWLEGK- 212 (220)
T ss_pred -------------------------------------c--------------------cEEEECcHHHHHHHHHHhhhc-
Confidence 0 599999999999999988763
Q ss_pred CCCCceEEEEecCC
Q 042007 831 LESPTRFDFHKENF 844 (844)
Q Consensus 831 ~~~~~~~~~h~E~F 844 (844)
.+|.|.|
T Consensus 213 -------~~~~e~f 219 (220)
T cd06197 213 -------KVHRESF 219 (220)
T ss_pred -------eeEeccc
Confidence 7899988
No 12
>PRK08051 fre FMN reductase; Validated
Probab=99.95 E-value=3.8e-27 Score=247.30 Aligned_cols=223 Identities=19% Similarity=0.252 Sum_probs=163.9
Q ss_pred ccEEEEEEEEecCCEEEEEEeCCCCCccCCCcEEEEEcCCCCCCCccCcccccCC-CCCceEEEEEecCC--chHHHHHH
Q 042007 530 HKVEVIKAVIYTGNVLALYMTKPPGFKYQSGMYLFVKCPDLSPFEWHPFSITSAP-GDYYLSVHIRTLGD--WTTELKQR 606 (844)
Q Consensus 530 ~~~~i~~v~~~~~~v~~l~i~~p~~~~~~pGQyv~l~~p~~s~~e~HPFTI~s~p-~~~~l~l~Ir~~G~--~T~~L~~~ 606 (844)
..++|.+++.+++++.+|++..+..+.|+||||++|++|.. +.|||||+|.| +++.++|+||..++ .+..+.+.
T Consensus 3 ~~~~v~~i~~~~~~~~~l~l~~~~~~~~~pGQ~v~l~~~~~---~~r~ySias~p~~~~~l~~~v~~~~~~~~~~~~~~~ 79 (232)
T PRK08051 3 LSCKVTSVEAITDTVYRVRLVPEAPFSFRAGQYLMVVMGEK---DKRPFSIASTPREKGFIELHIGASELNLYAMAVMER 79 (232)
T ss_pred eEEEEEEEecCCCCeEEEEEecCCCCccCCCCEEEEEcCCC---cceeecccCCCCCCCcEEEEEEEcCCCcchHHHHHH
Confidence 46788899999999999999887788999999999999763 67999999999 57889999999754 55665443
Q ss_pred HHhhcCCCCCCCCCCCcchhhhhhhhhccccccccccCcCEEEEeCccCCCCCCCCCCCeEEEEEcccchhchHHHHHHH
Q 042007 607 FEKVCEAPAPAKPNRGNLMRMETKSAANNANFEQIQASFPKILIKGPYGAPAQDYKNYDILLLIGLGIGATPFISIIKDL 686 (844)
Q Consensus 607 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IdGPyG~~~~~~~~~~~vvlVagGiGITp~lsil~~l 686 (844)
+ ++| .+|.|+||||.+..+....+++||||||+||||++|+++++
T Consensus 80 l----------~~G-------------------------~~v~v~gP~G~~~~~~~~~~~~vliagG~GiaP~~~~l~~~ 124 (232)
T PRK08051 80 I----------LKD-------------------------GEIEVDIPHGDAWLREESERPLLLIAGGTGFSYARSILLTA 124 (232)
T ss_pred c----------CCC-------------------------CEEEEEcCCCceEccCCCCCcEEEEecCcCcchHHHHHHHH
Confidence 3 355 68999999999865434467899999999999999999999
Q ss_pred HHHhhhcCcchhhhcCCCCCCCcEEEEEEEeCCCChhhhHHHHHHHHhccCCCCeEEEEEEEecccCCCChhHHHHHHHH
Q 042007 687 LNHIKSHERDTEFLENGFKKGPERAYFYWVTREQGSFEWFKGVMDDIADHDDKNVIEMHNYLTSVYEEGDARSALIAMVQ 766 (844)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~~~~~~~v~l~W~~R~~~~~~wf~~~L~~l~~~~~~~~l~i~~ylT~~~~~~d~~~~~~~~~~ 766 (844)
+... ..++++|+|++|+.+++ +|.++|.++++.. .+++++..+++..+ +.
T Consensus 125 ~~~~----------------~~~~v~l~~g~r~~~~~-~~~~el~~l~~~~--~~~~~~~~~~~~~~--~~--------- 174 (232)
T PRK08051 125 LAQG----------------PNRPITLYWGGREEDHL-YDLDELEALALKH--PNLHFVPVVEQPEE--GW--------- 174 (232)
T ss_pred HHhC----------------CCCcEEEEEEeccHHHh-hhhHHHHHHHHHC--CCcEEEEEeCCCCC--Cc---------
Confidence 7642 34689999999999998 8999998887643 24666555543211 10
Q ss_pred HhhhhcCCccccccCcccccccCCChHHHHHHHHhhCCCCcEEEEEeCChhHHHHHHHHH-HhhcCCCCceEEEEecCC
Q 042007 767 KLQHAKNGVDIVSESRIKTHFARPNWRKVFGQLATDHESSRIGVFYCGSATLTKTLKELC-LEFSLESPTRFDFHKENF 844 (844)
Q Consensus 767 ~~~~~~~~~d~~sg~~~~~~~gRPd~~~v~~~~~~~~~~~~v~V~~CGP~~m~~~vr~~~-~~~~~~~~~~~~~h~E~F 844 (844)
.| ..|+.. +.+++.... ..+..||+|||++|++++++.+ .+.+- ..-.+|.|.|
T Consensus 175 ------------~~-----~~g~v~-~~l~~~~~~---~~~~~vyicGp~~m~~~v~~~l~~~~G~---~~~~i~~e~f 229 (232)
T PRK08051 175 ------------QG-----KTGTVL-TAVMQDFGS---LAEYDIYIAGRFEMAKIARELFCRERGA---REEHLFGDAF 229 (232)
T ss_pred ------------cc-----ceeeeh-HHHHhhccC---cccCEEEEECCHHHHHHHHHHHHHHcCC---CHHHeecccc
Confidence 00 012222 222222211 1234699999999999999998 77543 2345777776
No 13
>cd06184 flavohem_like_fad_nad_binding FAD_NAD(P)H binding domain of flavohemoglobin. Flavohemoglobins have a globin domain containing a B-type heme fused with a ferredoxin reductase-like FAD/NAD-binding domain. Flavohemoglobins detoxify nitric oxide (NO) via an NO dioxygenase reaction. The hemoglobin domain adopts a globin fold with an embedded heme molecule. Flavohemoglobins also have a C-terminal reductase domain with bindiing sites for FAD and NAD(P)H. This domain catalyzes the conversion of NO + O2 + NAD(P)H to NO3- + NAD(P)+. Instead of the oxygen transport function of hemoglobins, flavohemoglobins seem to act in NO dioxygenation and NO signalling.
Probab=99.95 E-value=6.9e-27 Score=247.87 Aligned_cols=230 Identities=18% Similarity=0.284 Sum_probs=175.8
Q ss_pred ccEEEEEEEEecCCEEEEEEeCCCC---CccCCCcEEEEEcCCCC--CCCccCcccccCCCCCceEEEEEec--CCchHH
Q 042007 530 HKVEVIKAVIYTGNVLALYMTKPPG---FKYQSGMYLFVKCPDLS--PFEWHPFSITSAPGDYYLSVHIRTL--GDWTTE 602 (844)
Q Consensus 530 ~~~~i~~v~~~~~~v~~l~i~~p~~---~~~~pGQyv~l~~p~~s--~~e~HPFTI~s~p~~~~l~l~Ir~~--G~~T~~ 602 (844)
..++|.+++.+++++.+|++..|.. +.|+||||+.|.++..+ ...+|||||+|.|.++.++|+||.. |..|+.
T Consensus 7 ~~~~v~~~~~~s~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~R~ySi~s~~~~~~l~~~ik~~~~G~~s~~ 86 (247)
T cd06184 7 RPFVVARKVAESEDITSFYLEPADGGPLPPFLPGQYLSVRVKLPGLGYRQIRQYSLSDAPNGDYYRISVKREPGGLVSNY 86 (247)
T ss_pred EEEEEEEEEEcCCCeEEEEEEeCCCCcCCCCCCCCEEEEEEecCCCCCceeEEeEeccCCCCCeEEEEEEEcCCCcchHH
Confidence 5677888999999999999987653 68999999999997543 4688999999999888999999998 899999
Q ss_pred HHHHHHhhcCCCCCCCCCCCcchhhhhhhhhccccccccccCcCEEEEeCccCCCCCCCCCCCeEEEEEcccchhchHHH
Q 042007 603 LKQRFEKVCEAPAPAKPNRGNLMRMETKSAANNANFEQIQASFPKILIKGPYGAPAQDYKNYDILLLIGLGIGATPFISI 682 (844)
Q Consensus 603 L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IdGPyG~~~~~~~~~~~vvlVagGiGITp~lsi 682 (844)
|.+.+ .+| .++.|.||||.+..+...++++||||||+||||++|+
T Consensus 87 l~~~~----------~~G-------------------------d~v~i~gP~G~~~~~~~~~~~llliagGtGiaP~~~~ 131 (247)
T cd06184 87 LHDNV----------KVG-------------------------DVLEVSAPAGDFVLDEASDRPLVLISAGVGITPMLSM 131 (247)
T ss_pred HHhcC----------CCC-------------------------CEEEEEcCCCceECCCCCCCcEEEEeccccHhHHHHH
Confidence 87632 355 6899999999976543367899999999999999999
Q ss_pred HHHHHHHhhhcCcchhhhcCCCCCCCcEEEEEEEeCCCChhhhHHHHHHHHhccCCCCeEEEEEEEecccCCCChhHHHH
Q 042007 683 IKDLLNHIKSHERDTEFLENGFKKGPERAYFYWVTREQGSFEWFKGVMDDIADHDDKNVIEMHNYLTSVYEEGDARSALI 762 (844)
Q Consensus 683 l~~l~~~~~~~~~~~~~~~~~~~~~~~~v~l~W~~R~~~~~~wf~~~L~~l~~~~~~~~l~i~~ylT~~~~~~d~~~~~~ 762 (844)
++++.... ..++++|+|++|+.+++ +|.++|+++++.. .+++++.++++..+....
T Consensus 132 l~~~~~~~----------------~~~~i~l~~~~r~~~~~-~~~~~l~~l~~~~--~~~~~~~~~s~~~~~~~~----- 187 (247)
T cd06184 132 LEALAAEG----------------PGRPVTFIHAARNSAVH-AFRDELEELAARL--PNLKLHVFYSEPEAGDRE----- 187 (247)
T ss_pred HHHHHhcC----------------CCCcEEEEEEcCchhhH-HHHHHHHHHHhhC--CCeEEEEEECCCCccccc-----
Confidence 99997642 24679999999999996 7899999887642 467888887754321100
Q ss_pred HHHHHhhhhcCCccccccCcccccccCCChHHHHHHHHhhCCCCcEEEEEeCChhHHHHHHHHHHhhcCCCCceEEEEec
Q 042007 763 AMVQKLQHAKNGVDIVSESRIKTHFARPNWRKVFGQLATDHESSRIGVFYCGSATLTKTLKELCLEFSLESPTRFDFHKE 842 (844)
Q Consensus 763 ~~~~~~~~~~~~~d~~sg~~~~~~~gRPd~~~v~~~~~~~~~~~~v~V~~CGP~~m~~~vr~~~~~~~~~~~~~~~~h~E 842 (844)
....+.||++...+.+ . .+..+..||+|||++|++++++.+.+.+- ..-.+|.|
T Consensus 188 -------------------~~~~~~g~~~~~~l~~-~---~~~~~~~v~icGp~~m~~~v~~~l~~~G~---~~~~i~~e 241 (247)
T cd06184 188 -------------------EDYDHAGRIDLALLRE-L---LLPADADFYLCGPVPFMQAVREGLKALGV---PAERIHYE 241 (247)
T ss_pred -------------------ccccccCccCHHHHhh-c---cCCCCCEEEEECCHHHHHHHHHHHHHcCC---CHHHeeee
Confidence 0011236776543332 1 11234689999999999999999987643 23467777
Q ss_pred CC
Q 042007 843 NF 844 (844)
Q Consensus 843 ~F 844 (844)
.|
T Consensus 242 ~f 243 (247)
T cd06184 242 VF 243 (247)
T ss_pred cc
Confidence 76
No 14
>cd06212 monooxygenase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. These flavoprotein monooxygenases use molecular oxygen as a substrate and require reduced FAD. One atom of oxygen is incorportated into the aromatic compond, while the other is used to form a molecule of water. In contrast dioxygenases add both atoms of oxygen to the substrate.
Probab=99.95 E-value=7.3e-27 Score=245.30 Aligned_cols=225 Identities=16% Similarity=0.276 Sum_probs=167.7
Q ss_pred cEEEEEEEEecCCEEEEEEeCCC--CCccCCCcEEEEEcCCCCCCCccCcccccCCCC-CceEEEEEec--CCchHHHHH
Q 042007 531 KVEVIKAVIYTGNVLALYMTKPP--GFKYQSGMYLFVKCPDLSPFEWHPFSITSAPGD-YYLSVHIRTL--GDWTTELKQ 605 (844)
Q Consensus 531 ~~~i~~v~~~~~~v~~l~i~~p~--~~~~~pGQyv~l~~p~~s~~e~HPFTI~s~p~~-~~l~l~Ir~~--G~~T~~L~~ 605 (844)
.++|++++.+++++.++++..+. .+.|+||||+.|.+|+.. ++|||||+|.|.+ +.++|+||.. |.+|..|.+
T Consensus 2 ~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~~~--~~r~ySi~s~~~~~~~l~l~vk~~~~G~~s~~l~~ 79 (232)
T cd06212 2 VGTVVAVEALTHDIRRLRLRLEEPEPIKFFAGQYVDITVPGTE--ETRSFSMANTPADPGRLEFIIKKYPGGLFSSFLDD 79 (232)
T ss_pred ceEEEEEeecCCCeEEEEEEcCCCCcCCcCCCCeEEEEcCCCC--cccccccCCCCCCCCEEEEEEEECCCCchhhHHhh
Confidence 56788999999999999997544 578999999999998643 7899999999975 8899999997 778888876
Q ss_pred HHHhhcCCCCCCCCCCCcchhhhhhhhhccccccccccCcCEEEEeCccCCCCCCCCCCCeEEEEEcccchhchHHHHHH
Q 042007 606 RFEKVCEAPAPAKPNRGNLMRMETKSAANNANFEQIQASFPKILIKGPYGAPAQDYKNYDILLLIGLGIGATPFISIIKD 685 (844)
Q Consensus 606 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IdGPyG~~~~~~~~~~~vvlVagGiGITp~lsil~~ 685 (844)
.+ ++| .++.|.||||.+......++++||||||+||||++|++++
T Consensus 80 ~l----------~~G-------------------------~~v~i~gP~G~~~~~~~~~~~~l~iagG~Giap~~~~l~~ 124 (232)
T cd06212 80 GL----------AVG-------------------------DPVTVTGPYGTCTLRESRDRPIVLIGGGSGMAPLLSLLRD 124 (232)
T ss_pred cC----------CCC-------------------------CEEEEEcCcccceecCCCCCcEEEEecCcchhHHHHHHHH
Confidence 32 355 6799999999987543457899999999999999999999
Q ss_pred HHHHhhhcCcchhhhcCCCCCCCcEEEEEEEeCCCChhhhHHHHHHHHhccCCCCeEEEEEEEecccCCCChhHHHHHHH
Q 042007 686 LLNHIKSHERDTEFLENGFKKGPERAYFYWVTREQGSFEWFKGVMDDIADHDDKNVIEMHNYLTSVYEEGDARSALIAMV 765 (844)
Q Consensus 686 l~~~~~~~~~~~~~~~~~~~~~~~~v~l~W~~R~~~~~~wf~~~L~~l~~~~~~~~l~i~~ylT~~~~~~d~~~~~~~~~ 765 (844)
+.... ..++++|+|++|+.+++ ++.++|+++++.. .+++++..+++...+...
T Consensus 125 ~~~~~----------------~~~~v~l~~~~r~~~~~-~~~~~l~~l~~~~--~~~~~~~~~s~~~~~~~~-------- 177 (232)
T cd06212 125 MAASG----------------SDRPVRFFYGARTARDL-FYLEEIAALGEKI--PDFTFIPALSESPDDEGW-------- 177 (232)
T ss_pred HHhcC----------------CCCcEEEEEeccchHHh-ccHHHHHHHHHhC--CCEEEEEEECCCCCCCCC--------
Confidence 88652 24679999999999998 6778888887642 356666666643211100
Q ss_pred HHhhhhcCCccccccCcccccccCCChHHHHHHHHhhCCCCcEEEEEeCChhHHHHHHHHHHhhcCCCCceEEEEecCC
Q 042007 766 QKLQHAKNGVDIVSESRIKTHFARPNWRKVFGQLATDHESSRIGVFYCGSATLTKTLKELCLEFSLESPTRFDFHKENF 844 (844)
Q Consensus 766 ~~~~~~~~~~d~~sg~~~~~~~gRPd~~~v~~~~~~~~~~~~v~V~~CGP~~m~~~vr~~~~~~~~~~~~~~~~h~E~F 844 (844)
++ ..|+ +.+.+.+..... .+..||+|||++|++++.+.+.+.+. ..-.+|.|.|
T Consensus 178 -------------~~-----~~g~--~~~~~~~~~~~~--~~~~v~~CGp~~~~~~v~~~l~~~G~---~~~~i~~e~f 231 (232)
T cd06212 178 -------------SG-----ETGL--VTEVVQRNEATL--AGCDVYLCGPPPMIDAALPVLEMSGV---PPDQIFYDKF 231 (232)
T ss_pred -------------cC-----Cccc--HHHHHHhhccCc--cCCEEEEECCHHHHHHHHHHHHHcCC---CHHHeeeccc
Confidence 00 0022 223333322211 23479999999999999999988643 3456888877
No 15
>cd06215 FNR_iron_sulfur_binding_1 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal portion of the FAD/NAD binding domain contains most of the NADP(H) binding residues and the N-terminal sub-domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. In this ferredoxin like sub-group, the FAD/NAD sub-domains is typically fused to a C-terminal iron-sulfur binding domain. Iron-sulfur pr
Probab=99.95 E-value=5.4e-27 Score=246.07 Aligned_cols=225 Identities=24% Similarity=0.358 Sum_probs=171.7
Q ss_pred EEEEEEEecCCEEEEEEeCCCC--CccCCCcEEEEEcCCCCCCCccCcccccCCCC-CceEEEEEec--CCchHHHHHHH
Q 042007 533 EVIKAVIYTGNVLALYMTKPPG--FKYQSGMYLFVKCPDLSPFEWHPFSITSAPGD-YYLSVHIRTL--GDWTTELKQRF 607 (844)
Q Consensus 533 ~i~~v~~~~~~v~~l~i~~p~~--~~~~pGQyv~l~~p~~s~~e~HPFTI~s~p~~-~~l~l~Ir~~--G~~T~~L~~~~ 607 (844)
+|++++.+++++.+++++.|.. +.|+||||+.|.+|..+...+|||||+|.|.+ +.++|+||.. |.+|+.|.+.+
T Consensus 2 ~v~~~~~~t~~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~~~~~~~R~ySi~s~~~~~~~l~~~vk~~~~G~~s~~l~~~~ 81 (231)
T cd06215 2 RCVKIIQETPDVKTFRFAAPDGSLFAYKPGQFLTLELEIDGETVYRAYTLSSSPSRPDSLSITVKRVPGGLVSNWLHDNL 81 (231)
T ss_pred eEEEEEEcCCCeEEEEEECCCCCcCCcCCCCeEEEEEecCCCeEEEeeecccCCCCCCcEEEEEEEcCCCcchHHHHhcC
Confidence 5778888999999999998876 78999999999998666566899999999875 4599999998 88999887533
Q ss_pred HhhcCCCCCCCCCCCcchhhhhhhhhccccccccccCcCEEEEeCccCCCCCCCCCCCeEEEEEcccchhchHHHHHHHH
Q 042007 608 EKVCEAPAPAKPNRGNLMRMETKSAANNANFEQIQASFPKILIKGPYGAPAQDYKNYDILLLIGLGIGATPFISIIKDLL 687 (844)
Q Consensus 608 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IdGPyG~~~~~~~~~~~vvlVagGiGITp~lsil~~l~ 687 (844)
++| ..+.|.||||.+.......+++||||||+||||++++++++.
T Consensus 82 ----------~~G-------------------------~~v~i~gP~G~f~~~~~~~~~~vlIagG~Giap~~~~l~~~~ 126 (231)
T cd06215 82 ----------KVG-------------------------DELWASGPAGEFTLIDHPADKLLLLSAGSGITPMMSMARWLL 126 (231)
T ss_pred ----------CCC-------------------------CEEEEEcCcceeEeCCCCCCcEEEEecCcCcchHHHHHHHHH
Confidence 355 579999999997643334689999999999999999999987
Q ss_pred HHhhhcCcchhhhcCCCCCCCcEEEEEEEeCCCChhhhHHHHHHHHhccCCCCeEEEEEEEecccCCCChhHHHHHHHHH
Q 042007 688 NHIKSHERDTEFLENGFKKGPERAYFYWVTREQGSFEWFKGVMDDIADHDDKNVIEMHNYLTSVYEEGDARSALIAMVQK 767 (844)
Q Consensus 688 ~~~~~~~~~~~~~~~~~~~~~~~v~l~W~~R~~~~~~wf~~~L~~l~~~~~~~~l~i~~ylT~~~~~~d~~~~~~~~~~~ 767 (844)
... ..++++|+|++|+.+++ .+.++|+++.+.. ..++++.++|+..+. ..
T Consensus 127 ~~~----------------~~~~v~l~~~~r~~~~~-~~~~~l~~l~~~~--~~~~~~~~~~~~~~~-~~---------- 176 (231)
T cd06215 127 DTR----------------PDADIVFIHSARSPADI-IFADELEELARRH--PNFRLHLILEQPAPG-AW---------- 176 (231)
T ss_pred hcC----------------CCCcEEEEEecCChhhh-hHHHHHHHHHHHC--CCeEEEEEEccCCCC-cc----------
Confidence 542 24679999999999997 5788888887643 357888888763221 00
Q ss_pred hhhhcCCccccccCcccccccCCChHHHHHHHHhhCCCCcEEEEEeCChhHHHHHHHHHHhhcCCCCceEEEEecCC
Q 042007 768 LQHAKNGVDIVSESRIKTHFARPNWRKVFGQLATDHESSRIGVFYCGSATLTKTLKELCLEFSLESPTRFDFHKENF 844 (844)
Q Consensus 768 ~~~~~~~~d~~sg~~~~~~~gRPd~~~v~~~~~~~~~~~~v~V~~CGP~~m~~~vr~~~~~~~~~~~~~~~~h~E~F 844 (844)
.-..||.+.+ ++++..... ....||+|||++|++.+++.+.+.+. ..-.+|.|.|
T Consensus 177 ----------------~~~~g~~~~~-~l~~~~~~~--~~~~v~icGp~~m~~~~~~~l~~~gv---~~~~i~~e~f 231 (231)
T cd06215 177 ----------------GGYRGRLNAE-LLALLVPDL--KERTVFVCGPAGFMKAVKSLLAELGF---PMSRFHQESF 231 (231)
T ss_pred ----------------cccCCcCCHH-HHHHhcCCc--cCCeEEEECCHHHHHHHHHHHHHcCC---CHHHeeeecC
Confidence 0112666532 344433222 23479999999999999999987643 3446777877
No 16
>cd06191 FNR_iron_sulfur_binding Iron-sulfur binding Ferredoxin Reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with a C-terminal iron-sulfur binding cluster domain. FNR was intially identified as a chloroplast reductase activity catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methnae assimilation in a variety of organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in
Probab=99.95 E-value=6.6e-27 Score=245.47 Aligned_cols=226 Identities=17% Similarity=0.267 Sum_probs=168.0
Q ss_pred EEEEEEEecCCEEEEEEeCCCC--CccCCCcEEEEEcCCCCCCCccCcccccCCCCCceEEEEEec--CCchHHHHHHHH
Q 042007 533 EVIKAVIYTGNVLALYMTKPPG--FKYQSGMYLFVKCPDLSPFEWHPFSITSAPGDYYLSVHIRTL--GDWTTELKQRFE 608 (844)
Q Consensus 533 ~i~~v~~~~~~v~~l~i~~p~~--~~~~pGQyv~l~~p~~s~~e~HPFTI~s~p~~~~l~l~Ir~~--G~~T~~L~~~~~ 608 (844)
+|++++.+++++.++++..|.. +.|+||||+.|.++..+...+|||||+|.|.++.++|+||.. |.+|..|.+.+
T Consensus 2 ~v~~i~~~t~~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~~~~l~~~v~~~~~G~~s~~l~~~~- 80 (231)
T cd06191 2 RVAEVRSETPDAVTIVFAVPGPLQYGFRPGQHVTLKLDFDGEELRRCYSLCSSPAPDEISITVKRVPGGRVSNYLREHI- 80 (231)
T ss_pred EEEEEEecCCCcEEEEEeCCCCCCCCCCCCCeEEEEEecCCeEEeeeeeccCCCCCCeEEEEEEECCCCccchHHHhcC-
Confidence 5778888999999999987654 589999999999975555678999999998878899999998 88999987533
Q ss_pred hhcCCCCCCCCCCCcchhhhhhhhhccccccccccCcCEEEEeCccCCCCCCCCCCCeEEEEEcccchhchHHHHHHHHH
Q 042007 609 KVCEAPAPAKPNRGNLMRMETKSAANNANFEQIQASFPKILIKGPYGAPAQDYKNYDILLLIGLGIGATPFISIIKDLLN 688 (844)
Q Consensus 609 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IdGPyG~~~~~~~~~~~vvlVagGiGITp~lsil~~l~~ 688 (844)
++| .++.|+||||.+..+....+++||||||+||||++|+++++..
T Consensus 81 ---------~~G-------------------------d~v~i~gP~G~f~l~~~~~~~~lliagG~Gitp~~s~~~~~~~ 126 (231)
T cd06191 81 ---------QPG-------------------------MTVEVMGPQGHFVYQPQPPGRYLLVAAGSGITPLMAMIRATLQ 126 (231)
T ss_pred ---------CCC-------------------------CEEEEeCCccceEeCCCCCCcEEEEecCccHhHHHHHHHHHHh
Confidence 356 6799999999875443456789999999999999999999875
Q ss_pred HhhhcCcchhhhcCCCCCCCcEEEEEEEeCCCChhhhHHHHHHHHhccCCCCeEEEEEEEecccCCCChhHHHHHHHHHh
Q 042007 689 HIKSHERDTEFLENGFKKGPERAYFYWVTREQGSFEWFKGVMDDIADHDDKNVIEMHNYLTSVYEEGDARSALIAMVQKL 768 (844)
Q Consensus 689 ~~~~~~~~~~~~~~~~~~~~~~v~l~W~~R~~~~~~wf~~~L~~l~~~~~~~~l~i~~ylT~~~~~~d~~~~~~~~~~~~ 768 (844)
.. ..++++|+|++|+.+++ +|.++|+++++. ..+++++.++|+..+..+.
T Consensus 127 ~~----------------~~~~v~l~~~~r~~~~~-~~~~el~~l~~~--~~~~~~~~~~s~~~~~~~~----------- 176 (231)
T cd06191 127 TA----------------PESDFTLIHSARTPADM-IFAQELRELADK--PQRLRLLCIFTRETLDSDL----------- 176 (231)
T ss_pred cC----------------CCCCEEEEEecCCHHHH-hHHHHHHHHHHh--CCCeEEEEEECCCCCCccc-----------
Confidence 42 24689999999999998 688889888764 2467888777764321110
Q ss_pred hhhcCCccccccCcccccccCCChHHHHHHHHhhCCCCcEEEEEeCChhHHHHHHHHHHhhcCCCCceEEEEecCC
Q 042007 769 QHAKNGVDIVSESRIKTHFARPNWRKVFGQLATDHESSRIGVFYCGSATLTKTLKELCLEFSLESPTRFDFHKENF 844 (844)
Q Consensus 769 ~~~~~~~d~~sg~~~~~~~gRPd~~~v~~~~~~~~~~~~v~V~~CGP~~m~~~vr~~~~~~~~~~~~~~~~h~E~F 844 (844)
.+. .|+-. .++.+.+... .....||+|||++|++++++.+.+.+- ..-.+|.|.|
T Consensus 177 ----------~~~-----~~~~~-~~l~~~~~~~--~~~~~vyicGp~~mv~~~~~~l~~~G~---~~~~i~~E~f 231 (231)
T cd06191 177 ----------LHG-----RIDGE-QSLGAALIPD--RLEREAFICGPAGMMDAVETALKELGM---PPERIHTERF 231 (231)
T ss_pred ----------cCC-----ccccc-HHHHHHhCcc--ccCCeEEEECCHHHHHHHHHHHHHcCC---CHHHeeeccC
Confidence 000 01111 2232222211 123479999999999999999977543 3446788877
No 17
>cd06210 MMO_FAD_NAD_binding Methane monooxygenase (MMO) reductase of methanotrophs catalyzes the NADH-dependent hydroxylation of methane to methanol. This multicomponent enzyme mediates electron transfer via a hydroxylase (MMOH), a coupling protein, and a reductase which is comprised of an N-terminal [2Fe-2S] ferredoxin domain, an FAD binding subdomain, and an NADH binding subdomain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. Dioxygenases add both atom of oxygen to the substrate, while mono-oxygenases add one atom to the substrate and one atom to water.
Probab=99.95 E-value=1.3e-26 Score=244.07 Aligned_cols=225 Identities=16% Similarity=0.276 Sum_probs=167.6
Q ss_pred ccEEEEEEEEecCCEEEEEEeCCCC------CccCCCcEEEEEcCCCCCCCccCcccccCCC-CCceEEEEEec--CCch
Q 042007 530 HKVEVIKAVIYTGNVLALYMTKPPG------FKYQSGMYLFVKCPDLSPFEWHPFSITSAPG-DYYLSVHIRTL--GDWT 600 (844)
Q Consensus 530 ~~~~i~~v~~~~~~v~~l~i~~p~~------~~~~pGQyv~l~~p~~s~~e~HPFTI~s~p~-~~~l~l~Ir~~--G~~T 600 (844)
..++|++++.+++++++++++.|.+ +.|+||||+.|.+|.. .++|||||+|.|. ++.++|+||.. |.+|
T Consensus 2 ~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~pGQ~v~l~~~~~--~~~R~ySi~s~~~~~~~l~~~i~~~~~G~~s 79 (236)
T cd06210 2 REAEIVAVDRVSSNVVRLRLQPDDAEGAGIAAEFVPGQFVEIEIPGT--DTRRSYSLANTPNWDGRLEFLIRLLPGGAFS 79 (236)
T ss_pred ceEEEEEEeecCCceEEEEEEeCCcccccccCCcCCCCEEEEEcCCC--ccceecccCCCCCCCCEEEEEEEEcCCCccc
Confidence 3577889999999999999998764 7899999999999853 3689999999987 67899999986 7789
Q ss_pred HHHHHHHHhhcCCCCCCCCCCCcchhhhhhhhhccccccccccCcCEEEEeCccCCCCCCCCCCCeEEEEEcccchhchH
Q 042007 601 TELKQRFEKVCEAPAPAKPNRGNLMRMETKSAANNANFEQIQASFPKILIKGPYGAPAQDYKNYDILLLIGLGIGATPFI 680 (844)
Q Consensus 601 ~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IdGPyG~~~~~~~~~~~vvlVagGiGITp~l 680 (844)
..|.+.+ ++| .++.|.||||.+..+...++++||||||+||||++
T Consensus 80 ~~l~~~~----------~~G-------------------------d~v~i~gP~G~f~l~~~~~~~~vliagGtGiaP~~ 124 (236)
T cd06210 80 TYLETRA----------KVG-------------------------QRLNLRGPLGAFGLRENGLRPRWFVAGGTGLAPLL 124 (236)
T ss_pred hhhhhCc----------CCC-------------------------CEEEEecCcceeeecCCCCccEEEEccCcchhHHH
Confidence 9887632 356 67999999999754333567899999999999999
Q ss_pred HHHHHHHHHhhhcCcchhhhcCCCCCCCcEEEEEEEeCCCChhhhHHHHHHHHhccCCCCeEEEEEEEecccCCCChhHH
Q 042007 681 SIIKDLLNHIKSHERDTEFLENGFKKGPERAYFYWVTREQGSFEWFKGVMDDIADHDDKNVIEMHNYLTSVYEEGDARSA 760 (844)
Q Consensus 681 sil~~l~~~~~~~~~~~~~~~~~~~~~~~~v~l~W~~R~~~~~~wf~~~L~~l~~~~~~~~l~i~~ylT~~~~~~d~~~~ 760 (844)
|+++++.... ...+++|+|++|+.+++ ++.++|.++++.. .+++++..+++..+ +..
T Consensus 125 ~~l~~~~~~~----------------~~~~v~l~~~~r~~~~~-~~~~~l~~l~~~~--~~~~~~~~~s~~~~--~~~-- 181 (236)
T cd06210 125 SMLRRMAEWG----------------EPQEARLFFGVNTEAEL-FYLDELKRLADSL--PNLTVRICVWRPGG--EWE-- 181 (236)
T ss_pred HHHHHHHhcC----------------CCceEEEEEecCCHHHh-hhHHHHHHHHHhC--CCeEEEEEEcCCCC--CcC--
Confidence 9999987542 24689999999999997 7888898887653 35777777764311 100
Q ss_pred HHHHHHHhhhhcCCccccccCcccccccCCChHHHHHHHHhhCCCCcEEEEEeCChhHHHHHHHHHHhhcCCCCceEEEE
Q 042007 761 LIAMVQKLQHAKNGVDIVSESRIKTHFARPNWRKVFGQLATDHESSRIGVFYCGSATLTKTLKELCLEFSLESPTRFDFH 840 (844)
Q Consensus 761 ~~~~~~~~~~~~~~~d~~sg~~~~~~~gRPd~~~v~~~~~~~~~~~~v~V~~CGP~~m~~~vr~~~~~~~~~~~~~~~~h 840 (844)
+ ..|+. .+.+.+..... .....||+|||++|++++++.+.+.+- ..-.+|
T Consensus 182 -------------------~-----~~g~~--~~~l~~~l~~~-~~~~~vyicGp~~m~~~~~~~l~~~G~---~~~~i~ 231 (236)
T cd06210 182 -------------------G-----YRGTV--VDALREDLASS-DAKPDIYLCGPPGMVDAAFAAAREAGV---PDEQVY 231 (236)
T ss_pred -------------------C-----ccCcH--HHHHHHhhccc-CCCcEEEEeCCHHHHHHHHHHHHHcCC---CHHHee
Confidence 0 00221 22233222111 123469999999999999999987543 233577
Q ss_pred ecCC
Q 042007 841 KENF 844 (844)
Q Consensus 841 ~E~F 844 (844)
.|.|
T Consensus 232 ~E~f 235 (236)
T cd06210 232 LEKF 235 (236)
T ss_pred eccc
Confidence 7776
No 18
>cd06213 oxygenase_e_transfer_subunit The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate while mono-oxygenases add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=99.95 E-value=1.2e-26 Score=242.78 Aligned_cols=222 Identities=16% Similarity=0.258 Sum_probs=167.8
Q ss_pred cEEEEEEEEecCCEEEEEEeCCCCCccCCCcEEEEEcCCCCCCCccCcccccCCCC-CceEEEEEec--CCchHHHHHHH
Q 042007 531 KVEVIKAVIYTGNVLALYMTKPPGFKYQSGMYLFVKCPDLSPFEWHPFSITSAPGD-YYLSVHIRTL--GDWTTELKQRF 607 (844)
Q Consensus 531 ~~~i~~v~~~~~~v~~l~i~~p~~~~~~pGQyv~l~~p~~s~~e~HPFTI~s~p~~-~~l~l~Ir~~--G~~T~~L~~~~ 607 (844)
.++|.+++.++++++++++..|..+.|+||||+.|.+|... .+|||||+|+|.+ +.++|+||.. |.+|+.|.+.+
T Consensus 2 ~~~v~~~~~~t~~~~~~~l~~~~~~~~~pGQ~~~l~~~~~~--~~r~ysi~s~~~~~~~l~~~vk~~~~G~~s~~l~~~l 79 (227)
T cd06213 2 RGTIVAQERLTHDIVRLTVQLDRPIAYKAGQYAELTLPGLP--AARSYSFANAPQGDGQLSFHIRKVPGGAFSGWLFGAD 79 (227)
T ss_pred eEEEEEEeecCCCEEEEEEecCCCCCcCCCCEEEEEeCCCC--cccccccCCCCCCCCEEEEEEEECCCCcchHHHHhcC
Confidence 35788889999999999999877788999999999998654 6899999999874 7899999987 88999987643
Q ss_pred HhhcCCCCCCCCCCCcchhhhhhhhhccccccccccCcCEEEEeCccCCCCCCCCCCCeEEEEEcccchhchHHHHHHHH
Q 042007 608 EKVCEAPAPAKPNRGNLMRMETKSAANNANFEQIQASFPKILIKGPYGAPAQDYKNYDILLLIGLGIGATPFISIIKDLL 687 (844)
Q Consensus 608 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IdGPyG~~~~~~~~~~~vvlVagGiGITp~lsil~~l~ 687 (844)
++| .++.|+||||.+..+ ...+++||||||+||||++++++++.
T Consensus 80 ----------~~G-------------------------~~v~i~gP~G~~~~~-~~~~~~lliagG~GiaP~~~~~~~~~ 123 (227)
T cd06213 80 ----------RTG-------------------------ERLTVRGPFGDFWLR-PGDAPILCIAGGSGLAPILAILEQAR 123 (227)
T ss_pred ----------CCC-------------------------CEEEEeCCCcceEeC-CCCCcEEEEecccchhHHHHHHHHHH
Confidence 355 579999999998643 34578999999999999999999987
Q ss_pred HHhhhcCcchhhhcCCCCCCCcEEEEEEEeCCCChhhhHHHHHHHHhccCCCCeEEEEEEEecccCCCChhHHHHHHHHH
Q 042007 688 NHIKSHERDTEFLENGFKKGPERAYFYWVTREQGSFEWFKGVMDDIADHDDKNVIEMHNYLTSVYEEGDARSALIAMVQK 767 (844)
Q Consensus 688 ~~~~~~~~~~~~~~~~~~~~~~~v~l~W~~R~~~~~~wf~~~L~~l~~~~~~~~l~i~~ylT~~~~~~d~~~~~~~~~~~ 767 (844)
... ..++++++|++|+.+++ ++.++|.++++.. ..++.++.++++..+..+.
T Consensus 124 ~~~----------------~~~~i~l~~~~r~~~~~-~~~~~l~~l~~~~-~~~~~~~~~~s~~~~~~~~---------- 175 (227)
T cd06213 124 AAG----------------TKRDVTLLFGARTQRDL-YALDEIAAIAARW-RGRFRFIPVLSEEPADSSW---------- 175 (227)
T ss_pred hcC----------------CCCcEEEEEeeCCHHHh-ccHHHHHHHHHhc-cCCeEEEEEecCCCCCCCc----------
Confidence 642 34679999999999997 7888888887542 2357777666653211100
Q ss_pred hhhhcCCccccccCcccccccCC-ChHHHHHHHHhhCCCCcEEEEEeCChhHHHHHHHHHHhhcCCCCceEEEEecCC
Q 042007 768 LQHAKNGVDIVSESRIKTHFARP-NWRKVFGQLATDHESSRIGVFYCGSATLTKTLKELCLEFSLESPTRFDFHKENF 844 (844)
Q Consensus 768 ~~~~~~~~d~~sg~~~~~~~gRP-d~~~v~~~~~~~~~~~~v~V~~CGP~~m~~~vr~~~~~~~~~~~~~~~~h~E~F 844 (844)
.|++ ...+.+.+.. .....||+|||++|++++++.+.+.+. ..-.+|.|.|
T Consensus 176 -------------------~g~~g~v~~~l~~~~----~~~~~v~~CGp~~~~~~~~~~l~~~G~---~~~~i~~e~f 227 (227)
T cd06213 176 -------------------KGARGLVTEHIAEVL----LAATEAYLCGPPAMIDAAIAVLRALGI---AREHIHADRF 227 (227)
T ss_pred -------------------cCCcccHHHHHHhhc----cCCCEEEEECCHHHHHHHHHHHHHcCC---CHHHEeccCC
Confidence 0222 2223333322 123479999999999999999988543 2345777877
No 19
>cd06217 FNR_iron_sulfur_binding_3 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form
Probab=99.95 E-value=1.4e-26 Score=243.57 Aligned_cols=229 Identities=17% Similarity=0.263 Sum_probs=171.3
Q ss_pred cccEEEEEEEEecCCEEEEEEeCCCC--CccCCCcEEEEEcCCCC-CCCccCcccccCCCC-CceEEEEEec--CCchHH
Q 042007 529 NHKVEVIKAVIYTGNVLALYMTKPPG--FKYQSGMYLFVKCPDLS-PFEWHPFSITSAPGD-YYLSVHIRTL--GDWTTE 602 (844)
Q Consensus 529 ~~~~~i~~v~~~~~~v~~l~i~~p~~--~~~~pGQyv~l~~p~~s-~~e~HPFTI~s~p~~-~~l~l~Ir~~--G~~T~~ 602 (844)
|..++|++++.+++++.++++..|.. +.|+||||+.|.+|... ...+|||||+|.|.+ +.++|+||.. |..|..
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~r~ySi~s~~~~~~~l~l~v~~~~~G~~s~~ 80 (235)
T cd06217 1 WRVLRVTEIIQETPTVKTFRLAVPDGVPPPFLAGQHVDLRLTAIDGYTAQRSYSIASSPTQRGRVELTVKRVPGGEVSPY 80 (235)
T ss_pred CceEEEEEEEecCCCeEEEEEECCCCCcCCcCCcCeEEEEEecCCCceeeeeecccCCCCCCCeEEEEEEEcCCCcchHH
Confidence 35678899999999999999998876 78999999999998433 356799999999865 5899999997 668888
Q ss_pred HHHHHHhhcCCCCCCCCCCCcchhhhhhhhhccccccccccCcCEEEEeCccCCCCCCCCCCCeEEEEEcccchhchHHH
Q 042007 603 LKQRFEKVCEAPAPAKPNRGNLMRMETKSAANNANFEQIQASFPKILIKGPYGAPAQDYKNYDILLLIGLGIGATPFISI 682 (844)
Q Consensus 603 L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IdGPyG~~~~~~~~~~~vvlVagGiGITp~lsi 682 (844)
|.+.+ ++| .++.|.||||.+.......+++||||||+||||++++
T Consensus 81 l~~~l----------~~G-------------------------d~v~i~gP~G~~~~~~~~~~~~vliagG~Giap~~~~ 125 (235)
T cd06217 81 LHDEV----------KVG-------------------------DLLEVRGPIGTFTWNPLHGDPVVLLAGGSGIVPLMSM 125 (235)
T ss_pred HHhcC----------CCC-------------------------CEEEEeCCceeeEeCCCCCceEEEEecCcCccHHHHH
Confidence 87643 355 6799999999875432346889999999999999999
Q ss_pred HHHHHHHhhhcCcchhhhcCCCCCCCcEEEEEEEeCCCChhhhHHHHHHHHhccCCCCeEEEEEEEecccCCCChhHHHH
Q 042007 683 IKDLLNHIKSHERDTEFLENGFKKGPERAYFYWVTREQGSFEWFKGVMDDIADHDDKNVIEMHNYLTSVYEEGDARSALI 762 (844)
Q Consensus 683 l~~l~~~~~~~~~~~~~~~~~~~~~~~~v~l~W~~R~~~~~~wf~~~L~~l~~~~~~~~l~i~~ylT~~~~~~d~~~~~~ 762 (844)
++++++.. ..++++++|++|+.+++ ++.++|.++++.. .+++++.++|+..... .
T Consensus 126 ~~~~~~~~----------------~~~~i~l~~~~r~~~~~-~~~~el~~~~~~~--~~~~~~~~~s~~~~~~-~----- 180 (235)
T cd06217 126 IRYRRDLG----------------WPVPFRLLYSARTAEDV-IFRDELEQLARRH--PNLHVTEALTRAAPAD-W----- 180 (235)
T ss_pred HHHHHhcC----------------CCceEEEEEecCCHHHh-hHHHHHHHHHHHC--CCeEEEEEeCCCCCCC-c-----
Confidence 99987652 34689999999999987 7888888887642 3577777776531110 0
Q ss_pred HHHHHhhhhcCCccccccCcccccccCCChHHHHHHHHhhCCCCcEEEEEeCChhHHHHHHHHHHhhcCCCCceEEEEec
Q 042007 763 AMVQKLQHAKNGVDIVSESRIKTHFARPNWRKVFGQLATDHESSRIGVFYCGSATLTKTLKELCLEFSLESPTRFDFHKE 842 (844)
Q Consensus 763 ~~~~~~~~~~~~~d~~sg~~~~~~~gRPd~~~v~~~~~~~~~~~~v~V~~CGP~~m~~~vr~~~~~~~~~~~~~~~~h~E 842 (844)
.-+.||.+.. ++++.... .....||+|||++|++++++.+.+.+- ..-.+|.|
T Consensus 181 ---------------------~~~~g~~~~~-~l~~~~~~--~~~~~v~icGp~~m~~~v~~~l~~~Gv---~~~~i~~E 233 (235)
T cd06217 181 ---------------------LGPAGRITAD-LIAELVPP--LAGRRVYVCGPPAFVEAATRLLLELGV---PRDRIRTE 233 (235)
T ss_pred ---------------------CCcCcEeCHH-HHHhhCCC--ccCCEEEEECCHHHHHHHHHHHHHcCC---CHHHEeec
Confidence 0112566532 33333211 123579999999999999999988643 23456778
Q ss_pred CC
Q 042007 843 NF 844 (844)
Q Consensus 843 ~F 844 (844)
.|
T Consensus 234 ~f 235 (235)
T cd06217 234 AF 235 (235)
T ss_pred cC
Confidence 77
No 20
>cd06211 phenol_2-monooxygenase_like Phenol 2-monooxygenase (phenol hydroxylase) is a flavoprotein monooxygenase, able to use molecular oxygen as a substrate in the microbial degredation of phenol. This protein is encoded by a single gene and uses a tightly bound FAD cofactor in the NAD(P)H dependent conversion of phenol and O2 to catechol and H2O. This group is related to the NAD binding ferredoxin reductases.
Probab=99.95 E-value=1.8e-26 Score=243.28 Aligned_cols=227 Identities=18% Similarity=0.242 Sum_probs=169.7
Q ss_pred ccEEEEEEEEecCCEEEEEEeCCCCC--ccCCCcEEEEEcCCCCCCCccCcccccCCC-CCceEEEEEec--CCchHHHH
Q 042007 530 HKVEVIKAVIYTGNVLALYMTKPPGF--KYQSGMYLFVKCPDLSPFEWHPFSITSAPG-DYYLSVHIRTL--GDWTTELK 604 (844)
Q Consensus 530 ~~~~i~~v~~~~~~v~~l~i~~p~~~--~~~pGQyv~l~~p~~s~~e~HPFTI~s~p~-~~~l~l~Ir~~--G~~T~~L~ 604 (844)
..++|++++.+++++.++++..|... .|+||||+.|.+|.. -++|||||+|.|. ++.+.|+||.. |..|..|.
T Consensus 7 ~~~~v~~~~~~t~~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~~--~~~r~ySi~s~~~~~~~l~l~i~~~~~G~~s~~l~ 84 (238)
T cd06211 7 FEGTVVEIEDLTPTIKGVRLKLDEPEEIEFQAGQYVNLQAPGY--EGTRAFSIASSPSDAGEIELHIRLVPGGIATTYVH 84 (238)
T ss_pred EeEEEEEEEecCCCEEEEEEEcCCCCcCccCCCCeEEEEcCCC--CCccccccCCCCCCCCEEEEEEEECCCCcchhhHh
Confidence 46788999999999999999987664 899999999999864 2689999999986 57899999997 88999997
Q ss_pred HHHHhhcCCCCCCCCCCCcchhhhhhhhhccccccccccCcCEEEEeCccCCCCCCCCCCCeEEEEEcccchhchHHHHH
Q 042007 605 QRFEKVCEAPAPAKPNRGNLMRMETKSAANNANFEQIQASFPKILIKGPYGAPAQDYKNYDILLLIGLGIGATPFISIIK 684 (844)
Q Consensus 605 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IdGPyG~~~~~~~~~~~vvlVagGiGITp~lsil~ 684 (844)
+.+ ++| .+|.|.||||.+.......+++||||||+||||++|+++
T Consensus 85 ~~l----------~~G-------------------------~~v~i~gP~G~~~~~~~~~~~~v~iagG~GiaP~~~~l~ 129 (238)
T cd06211 85 KQL----------KEG-------------------------DELEISGPYGDFFVRDSDQRPIIFIAGGSGLSSPRSMIL 129 (238)
T ss_pred hcC----------CCC-------------------------CEEEEECCccceEecCCCCCCEEEEeCCcCHHHHHHHHH
Confidence 533 355 579999999998653334578999999999999999999
Q ss_pred HHHHHhhhcCcchhhhcCCCCCCCcEEEEEEEeCCCChhhhHHHHHHHHhccCCCCeEEEEEEEecccCCCChhHHHHHH
Q 042007 685 DLLNHIKSHERDTEFLENGFKKGPERAYFYWVTREQGSFEWFKGVMDDIADHDDKNVIEMHNYLTSVYEEGDARSALIAM 764 (844)
Q Consensus 685 ~l~~~~~~~~~~~~~~~~~~~~~~~~v~l~W~~R~~~~~~wf~~~L~~l~~~~~~~~l~i~~ylT~~~~~~d~~~~~~~~ 764 (844)
+++... ..++++|+|++|+.+++ +|.++++++++.. .++.++..+++..++...
T Consensus 130 ~~~~~~----------------~~~~v~l~~~~r~~~~~-~~~~~l~~l~~~~--~~~~~~~~~s~~~~~~~~------- 183 (238)
T cd06211 130 DLLERG----------------DTRKITLFFGARTRAEL-YYLDEFEALEKDH--PNFKYVPALSREPPESNW------- 183 (238)
T ss_pred HHHhcC----------------CCCcEEEEEecCChhhh-ccHHHHHHHHHhC--CCeEEEEEECCCCCCcCc-------
Confidence 987642 23679999999999997 8899999887643 246666666654221110
Q ss_pred HHHhhhhcCCccccccCcccccccCCChHHHHHHHHhhCCCCcEEEEEeCChhHHHHHHHHHHhhcCCCCceEEEEecCC
Q 042007 765 VQKLQHAKNGVDIVSESRIKTHFARPNWRKVFGQLATDHESSRIGVFYCGSATLTKTLKELCLEFSLESPTRFDFHKENF 844 (844)
Q Consensus 765 ~~~~~~~~~~~d~~sg~~~~~~~gRPd~~~v~~~~~~~~~~~~v~V~~CGP~~m~~~vr~~~~~~~~~~~~~~~~h~E~F 844 (844)
.| ..||. .+++.+..... .++..||+|||++|++++.+.+.+.+-+ .-.+|.|.|
T Consensus 184 --------------~~-----~~g~v--~~~l~~~~~~~-~~~~~vyvCGp~~m~~~~~~~L~~~Gv~---~~~i~~e~F 238 (238)
T cd06211 184 --------------KG-----FTGFV--HDAAKKHFKND-FRGHKAYLCGPPPMIDACIKTLMQGRLF---ERDIYYEKF 238 (238)
T ss_pred --------------cc-----ccCcH--HHHHHHhcccc-cccCEEEEECCHHHHHHHHHHHHHcCCC---HHHccccCC
Confidence 00 01332 23444433211 1235799999999999999999886432 335788877
No 21
>cd06190 T4MO_e_transfer_like Toluene-4-monoxygenase electron transfer component of Pseudomonas mendocina hydroxylates toluene and forms p-cresol as part of a three component toluene-4-monoxygenase system. Electron transfer is from NADH to an NADH:ferredoxin oxidoreductase (TmoF in P. mendocina) to ferredoxin to an iron-containing oxygenase. TmoF is homologous to other mono- and dioxygenase systems within the ferredoxin reductase family.
Probab=99.95 E-value=2.5e-26 Score=241.18 Aligned_cols=227 Identities=12% Similarity=0.187 Sum_probs=166.3
Q ss_pred EEEEEecCCEEEEEEeCCCCCccCCCcEEEEEcCCCCCCCccCcccccCCCC-CceEEEEEec--CCchHHHHHHHHhhc
Q 042007 535 IKAVIYTGNVLALYMTKPPGFKYQSGMYLFVKCPDLSPFEWHPFSITSAPGD-YYLSVHIRTL--GDWTTELKQRFEKVC 611 (844)
Q Consensus 535 ~~v~~~~~~v~~l~i~~p~~~~~~pGQyv~l~~p~~s~~e~HPFTI~s~p~~-~~l~l~Ir~~--G~~T~~L~~~~~~~~ 611 (844)
++++.+++++.+++++.|..+.|+||||++|.+|..+ ..|||||+|.|.+ +.++|+||.. |.+|+.|.+.+
T Consensus 2 ~~~~~~t~~~~~~~l~~~~~~~~~pGQ~v~l~~~~~~--~~r~ySi~s~~~~~~~~~~~vk~~~~G~~s~~l~~~~---- 75 (232)
T cd06190 2 VDVRELTHDVAEFRFALDGPADFLPGQYALLALPGVE--GARAYSMANLANASGEWEFIIKRKPGGAASNALFDNL---- 75 (232)
T ss_pred CceEEcCCCEEEEEEEcCCccccCCCCEEEEECCCCC--cccCccCCcCCCCCCEEEEEEEEcCCCcchHHHhhcC----
Confidence 4567789999999999888889999999999998754 6799999999875 7899999987 88999998643
Q ss_pred CCCCCCCCCCCcchhhhhhhhhccccccccccCcCEEEEeCccCCCCCCCCCCCeEEEEEcccchhchHHHHHHHHHHhh
Q 042007 612 EAPAPAKPNRGNLMRMETKSAANNANFEQIQASFPKILIKGPYGAPAQDYKNYDILLLIGLGIGATPFISIIKDLLNHIK 691 (844)
Q Consensus 612 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IdGPyG~~~~~~~~~~~vvlVagGiGITp~lsil~~l~~~~~ 691 (844)
++| .++.|.||||.+.......+++||||||+||||++|+++++.....
T Consensus 76 ------~~g-------------------------~~v~v~gP~G~~~~~~~~~~~illIagG~GiaP~~~~l~~~~~~~~ 124 (232)
T cd06190 76 ------EPG-------------------------DELELDGPYGLAYLRPDEDRDIVCIAGGSGLAPMLSILRGAARSPY 124 (232)
T ss_pred ------CCC-------------------------CEEEEECCcccceecCCCCCcEEEEeeCcCHHHHHHHHHHHHhccc
Confidence 245 5799999999986433456789999999999999999999876421
Q ss_pred hcCcchhhhcCCCCCCCcEEEEEEEeCCCChhhhHHHHHHHHhccCCCCeEEEEEEEecccCCCChhHHHHHHHHHhhhh
Q 042007 692 SHERDTEFLENGFKKGPERAYFYWVTREQGSFEWFKGVMDDIADHDDKNVIEMHNYLTSVYEEGDARSALIAMVQKLQHA 771 (844)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~v~l~W~~R~~~~~~wf~~~L~~l~~~~~~~~l~i~~ylT~~~~~~d~~~~~~~~~~~~~~~ 771 (844)
. ...+++|+|++|+.+++ .|.++|.++.+. ...++++..+++..+.....
T Consensus 125 ~--------------~~~~v~l~~~~r~~~~~-~~~~el~~l~~~--~~~~~~~~~~s~~~~~~~~~------------- 174 (232)
T cd06190 125 L--------------SDRPVDLFYGGRTPSDL-CALDELSALVAL--GARLRVTPAVSDAGSGSAAG------------- 174 (232)
T ss_pred C--------------CCCeEEEEEeecCHHHH-hhHHHHHHHHHh--CCCEEEEEEeCCCCCCcCCC-------------
Confidence 0 24789999999999987 688889888765 23577776666432211000
Q ss_pred cCCccccccCcccccccCCChHHHHHHHHhhCCCCcEEEEEeCChhHHHHHHHHHHhhcCCCCceEEEEecCC
Q 042007 772 KNGVDIVSESRIKTHFARPNWRKVFGQLATDHESSRIGVFYCGSATLTKTLKELCLEFSLESPTRFDFHKENF 844 (844)
Q Consensus 772 ~~~~d~~sg~~~~~~~gRPd~~~v~~~~~~~~~~~~v~V~~CGP~~m~~~vr~~~~~~~~~~~~~~~~h~E~F 844 (844)
.....||.. +.+.+...... ....||+|||++|++++++.+.+.+.. ..-.+|.|.|
T Consensus 175 -----------~~~~~g~v~--~~l~~~~~~~~-~~~~vyiCGp~~m~~~v~~~l~~~g~~--~~~~i~~e~f 231 (232)
T cd06190 175 -----------WDGPTGFVH--EVVEATLGDRL-AEFEFYFAGPPPMVDAVQRMLMIEGVV--PFDQIHFDRF 231 (232)
T ss_pred -----------ccCCcCcHH--HHHHhhccCCc-cccEEEEECCHHHHHHHHHHHHHhCCC--ChHheeeccc
Confidence 000113322 33433332211 245899999999999999988775321 1335688877
No 22
>cd06209 BenDO_FAD_NAD Benzoate dioxygenase reductase (BenDO) FAD/NAD binding domain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. As a Class I bacterial dioxygenases, benzoate dioxygenase like proteins combine an [2Fe-2S] cluster containing N-terminal ferredoxin at the end fused to an FAD/NADP(P) domain. In dioxygenase FAD/NAD(P) binding domain, the reductase transfers 2 electrons from NAD(P)H to the oxygenase which insert into an aromatic substrate, an initial step in microbial aerobic degradation of aromatic rings. Flavin oxidoreductases use flavins as substrates, unlike flavoenzymes which have a flavin prosthetic group.
Probab=99.95 E-value=2.6e-26 Score=240.50 Aligned_cols=221 Identities=18% Similarity=0.295 Sum_probs=168.0
Q ss_pred cEEEEEEEEecCCEEEEEEeCCC--CCccCCCcEEEEEcCCCCCCCccCcccccCCCCCceEEEEEec--CCchHHHHHH
Q 042007 531 KVEVIKAVIYTGNVLALYMTKPP--GFKYQSGMYLFVKCPDLSPFEWHPFSITSAPGDYYLSVHIRTL--GDWTTELKQR 606 (844)
Q Consensus 531 ~~~i~~v~~~~~~v~~l~i~~p~--~~~~~pGQyv~l~~p~~s~~e~HPFTI~s~p~~~~l~l~Ir~~--G~~T~~L~~~ 606 (844)
.++|++++.+++++++|+++.|. .+.|+||||+.|++|+. .++|||||+|.|.++.++|+||.. |.+|+.|.+.
T Consensus 3 ~~~V~~~~~~t~~~~~l~l~~~~~~~~~~~pGQ~v~l~~~~~--~~~r~ysi~s~~~~~~i~~~i~~~~~G~~s~~l~~~ 80 (228)
T cd06209 3 EATVTEVERLSDSTIGLTLELDEAGALAFLPGQYVNLQVPGT--DETRSYSFSSAPGDPRLEFLIRLLPGGAMSSYLRDR 80 (228)
T ss_pred eEEEEEEEEcCCCeEEEEEEcCCCCcCccCCCCEEEEEeCCC--CcccccccccCCCCCeEEEEEEEcCCCcchhhHHhc
Confidence 57889999999999999999876 67899999999999864 368999999999888999999986 7789988773
Q ss_pred HHhhcCCCCCCCCCCCcchhhhhhhhhccccccccccCcCEEEEeCccCCCCCCCCCCCeEEEEEcccchhchHHHHHHH
Q 042007 607 FEKVCEAPAPAKPNRGNLMRMETKSAANNANFEQIQASFPKILIKGPYGAPAQDYKNYDILLLIGLGIGATPFISIIKDL 686 (844)
Q Consensus 607 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IdGPyG~~~~~~~~~~~vvlVagGiGITp~lsil~~l 686 (844)
+ ++| .++.|.||||.+..+ ...++++|||||+||||++|+++++
T Consensus 81 l----------~~G-------------------------~~v~v~gP~G~~~~~-~~~~~~vlia~GtGIaP~~~ll~~~ 124 (228)
T cd06209 81 A----------QPG-------------------------DRLTLTGPLGSFYLR-EVKRPLLMLAGGTGLAPFLSMLDVL 124 (228)
T ss_pred c----------CCC-------------------------CEEEEECCcccceec-CCCCeEEEEEcccCHhHHHHHHHHH
Confidence 3 355 579999999987643 3347899999999999999999998
Q ss_pred HHHhhhcCcchhhhcCCCCCCCcEEEEEEEeCCCChhhhHHHHHHHHhccCCCCeEEEEEEEecccCCCChhHHHHHHHH
Q 042007 687 LNHIKSHERDTEFLENGFKKGPERAYFYWVTREQGSFEWFKGVMDDIADHDDKNVIEMHNYLTSVYEEGDARSALIAMVQ 766 (844)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~~~~~~~v~l~W~~R~~~~~~wf~~~L~~l~~~~~~~~l~i~~ylT~~~~~~d~~~~~~~~~~ 766 (844)
.... ..++++|+|++|+.+++ .+.++++++.+.. .+++++.++++.... ..
T Consensus 125 ~~~~----------------~~~~v~l~~~~r~~~~~-~~~~~l~~l~~~~--~~~~~~~~~s~~~~~-~~--------- 175 (228)
T cd06209 125 AEDG----------------SAHPVHLVYGVTRDADL-VELDRLEALAERL--PGFSFRTVVADPDSW-HP--------- 175 (228)
T ss_pred HhcC----------------CCCcEEEEEecCCHHHh-ccHHHHHHHHHhC--CCeEEEEEEcCCCcc-CC---------
Confidence 7642 24689999999999987 6788888887643 357888887753210 00
Q ss_pred HhhhhcCCccccccCcccccccCCChHHHHHHHHhhCCCCcEEEEEeCChhHHHHHHHHHHhhcCCCCceEEEEecCC
Q 042007 767 KLQHAKNGVDIVSESRIKTHFARPNWRKVFGQLATDHESSRIGVFYCGSATLTKTLKELCLEFSLESPTRFDFHKENF 844 (844)
Q Consensus 767 ~~~~~~~~~d~~sg~~~~~~~gRPd~~~v~~~~~~~~~~~~v~V~~CGP~~m~~~vr~~~~~~~~~~~~~~~~h~E~F 844 (844)
..|+ +.+.+.+... ...+..||+|||++|++++++.+.+.+- ..-.+|.|.|
T Consensus 176 -------------------~~g~--v~~~~~~~~~--~~~~~~v~icGp~~m~~~~~~~l~~~G~---~~~~i~~E~F 227 (228)
T cd06209 176 -------------------RKGY--VTDHLEAEDL--NDGDVDVYLCGPPPMVDAVRSWLDEQGI---EPANFYYEKF 227 (228)
T ss_pred -------------------CcCC--ccHHHHHhhc--cCCCcEEEEeCCHHHHHHHHHHHHHcCC---CHHHEeeecc
Confidence 0012 1222222211 1124579999999999999999987543 3456777877
No 23
>cd06194 FNR_N-term_Iron_sulfur_binding Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an N-terminal Iron-Sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second e
Probab=99.95 E-value=1.5e-26 Score=241.18 Aligned_cols=216 Identities=17% Similarity=0.261 Sum_probs=162.4
Q ss_pred EEEEEecCCEEEEEEeCCCCCccCCCcEEEEEcCCCCCCCccCcccccCCCC-CceEEEEEec--CCchHHHHHHHHhhc
Q 042007 535 IKAVIYTGNVLALYMTKPPGFKYQSGMYLFVKCPDLSPFEWHPFSITSAPGD-YYLSVHIRTL--GDWTTELKQRFEKVC 611 (844)
Q Consensus 535 ~~v~~~~~~v~~l~i~~p~~~~~~pGQyv~l~~p~~s~~e~HPFTI~s~p~~-~~l~l~Ir~~--G~~T~~L~~~~~~~~ 611 (844)
.+++.+++++++++++.|..+.|+||||++|++|.. ..|||||+|.|.+ +.++|+||.. |.+|..|.+.+
T Consensus 2 ~~~~~~~~~~~~i~l~~~~~~~~~pGQ~v~l~~~~~---~~r~ySi~s~~~~~~~~~~~i~~~~~G~~s~~l~~~~---- 74 (222)
T cd06194 2 VSLQRLSPDVLRVRLEPDRPLPYLPGQYVNLRRAGG---LARSYSPTSLPDGDNELEFHIRRKPNGAFSGWLGEEA---- 74 (222)
T ss_pred ceeeecCCCEEEEEEecCCCCCcCCCCEEEEEcCCC---CceeeecCCCCCCCCEEEEEEEeccCCccchHHHhcc----
Confidence 467778999999999988888999999999999863 5699999999876 7899999986 77899888743
Q ss_pred CCCCCCCCCCCcchhhhhhhhhccccccccccCcCEEEEeCccCCCCCCC-CCCCeEEEEEcccchhchHHHHHHHHHHh
Q 042007 612 EAPAPAKPNRGNLMRMETKSAANNANFEQIQASFPKILIKGPYGAPAQDY-KNYDILLLIGLGIGATPFISIIKDLLNHI 690 (844)
Q Consensus 612 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IdGPyG~~~~~~-~~~~~vvlVagGiGITp~lsil~~l~~~~ 690 (844)
++| .++.|.||||.+.... ..++++|+||||+||||++|++++++...
T Consensus 75 ------~~G-------------------------~~v~i~gP~G~~~~~~~~~~~~~v~iagG~Giap~~~~l~~~~~~~ 123 (222)
T cd06194 75 ------RPG-------------------------HALRLQGPFGQAFYRPEYGEGPLLLVGAGTGLAPLWGIARAALRQG 123 (222)
T ss_pred ------CCC-------------------------CEEEEecCcCCeeccCCCCCCCEEEEecCcchhhHHHHHHHHHhcC
Confidence 355 6799999999976432 45678999999999999999999987542
Q ss_pred hhcCcchhhhcCCCCCCCcEEEEEEEeCCCChhhhHHHHHHHHhccCCCCeEEEEEEEecccCCCChhHHHHHHHHHhhh
Q 042007 691 KSHERDTEFLENGFKKGPERAYFYWVTREQGSFEWFKGVMDDIADHDDKNVIEMHNYLTSVYEEGDARSALIAMVQKLQH 770 (844)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~~v~l~W~~R~~~~~~wf~~~L~~l~~~~~~~~l~i~~ylT~~~~~~d~~~~~~~~~~~~~~ 770 (844)
..++|+|+|++|+.+++ +|.++|+++++.. .+++++..+++..+. ..
T Consensus 124 ----------------~~~~v~l~~~~r~~~~~-~~~~el~~l~~~~--~~~~~~~~~~~~~~~-~~------------- 170 (222)
T cd06194 124 ----------------HQGEIRLVHGARDPDDL-YLHPALLWLAREH--PNFRYIPCVSEGSQG-DP------------- 170 (222)
T ss_pred ----------------CCccEEEEEecCChhhc-cCHHHHHHHHHHC--CCeEEEEEEccCCCC-Cc-------------
Confidence 24689999999999997 7899999887642 356666666653211 00
Q ss_pred hcCCccccccCcccccccCCChHHHHHHHHhhCCCCcEEEEEeCChhHHHHHHHHHHhhcCCCCceEEEEecCC
Q 042007 771 AKNGVDIVSESRIKTHFARPNWRKVFGQLATDHESSRIGVFYCGSATLTKTLKELCLEFSLESPTRFDFHKENF 844 (844)
Q Consensus 771 ~~~~~d~~sg~~~~~~~gRPd~~~v~~~~~~~~~~~~v~V~~CGP~~m~~~vr~~~~~~~~~~~~~~~~h~E~F 844 (844)
+.....+...+.. ......||+|||++|++++++.+.+.+- ..-.+|.|.|
T Consensus 171 ------------------~~~~~~~~~~~~~--~~~~~~vyicGp~~m~~~~~~~L~~~Gv---~~~~i~~e~f 221 (222)
T cd06194 171 ------------------RVRAGRIAAHLPP--LTRDDVVYLCGAPSMVNAVRRRAFLAGA---PMKRIYADPF 221 (222)
T ss_pred ------------------ccccchhhhhhcc--ccCCCEEEEeCCHHHHHHHHHHHHHcCC---CHHHeeeccc
Confidence 0001112121111 1124579999999999999999987543 3446777776
No 24
>cd06187 O2ase_reductase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons using oxygen as the oxidant. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate, while mono-oxygenases (aka mixed oxygenases) add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=99.95 E-value=2.7e-26 Score=239.61 Aligned_cols=220 Identities=16% Similarity=0.297 Sum_probs=163.6
Q ss_pred EEEEEecCCEEEEEEeCCCCCccCCCcEEEEEcCCCCCCCccCcccccCCCC-CceEEEEEec--CCchHHHHHHHHhhc
Q 042007 535 IKAVIYTGNVLALYMTKPPGFKYQSGMYLFVKCPDLSPFEWHPFSITSAPGD-YYLSVHIRTL--GDWTTELKQRFEKVC 611 (844)
Q Consensus 535 ~~v~~~~~~v~~l~i~~p~~~~~~pGQyv~l~~p~~s~~e~HPFTI~s~p~~-~~l~l~Ir~~--G~~T~~L~~~~~~~~ 611 (844)
++++.+++++.++++..|..+.|+||||+.|.+|..+. .+|||||+|.|.+ +.++|+||.. |.+|+.|.+.+
T Consensus 2 ~~~~~~~~~~~~~~l~~~~~~~~~pGq~i~l~~~~~~~-~~r~ysi~s~~~~~~~~~~~i~~~~~G~~s~~l~~~l---- 76 (224)
T cd06187 2 VSVERLTHDIAVVRLQLDQPLPFWAGQYVNVTVPGRPR-TWRAYSPANPPNEDGEIEFHVRAVPGGRVSNALHDEL---- 76 (224)
T ss_pred eeeeecCCCEEEEEEEeCCCCCcCCCceEEEEcCCCCC-cceeccccCCCCCCCEEEEEEEeCCCCcchHHHhhcC----
Confidence 46778899999999998878899999999999987543 7899999999875 7899999998 88999998733
Q ss_pred CCCCCCCCCCCcchhhhhhhhhccccccccccCcCEEEEeCccCCCCCCCCCCCeEEEEEcccchhchHHHHHHHHHHhh
Q 042007 612 EAPAPAKPNRGNLMRMETKSAANNANFEQIQASFPKILIKGPYGAPAQDYKNYDILLLIGLGIGATPFISIIKDLLNHIK 691 (844)
Q Consensus 612 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IdGPyG~~~~~~~~~~~vvlVagGiGITp~lsil~~l~~~~~ 691 (844)
++| ..+.|.||||.+......++++||||||+||||++|+++++....
T Consensus 77 ------~~G-------------------------~~v~i~gP~G~~~~~~~~~~~~lliagG~GI~p~~sll~~~~~~~- 124 (224)
T cd06187 77 ------KVG-------------------------DRVRLSGPYGTFYLRRDHDRPVLCIAGGTGLAPLRAIVEDALRRG- 124 (224)
T ss_pred ------ccC-------------------------CEEEEeCCccceEecCCCCCCEEEEecCcCHHHHHHHHHHHHhcC-
Confidence 355 679999999997654334688999999999999999999987642
Q ss_pred hcCcchhhhcCCCCCCCcEEEEEEEeCCCChhhhHHHHHHHHhccCCCCeEEEEEEEecccCCCChhHHHHHHHHHhhhh
Q 042007 692 SHERDTEFLENGFKKGPERAYFYWVTREQGSFEWFKGVMDDIADHDDKNVIEMHNYLTSVYEEGDARSALIAMVQKLQHA 771 (844)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~v~l~W~~R~~~~~~wf~~~L~~l~~~~~~~~l~i~~ylT~~~~~~d~~~~~~~~~~~~~~~ 771 (844)
...++.++|++|+.+++ .+.++|+++++.. ..++++.++++..+...
T Consensus 125 ---------------~~~~v~l~~~~~~~~~~-~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~--------------- 171 (224)
T cd06187 125 ---------------EPRPVHLFFGARTERDL-YDLEGLLALAARH--PWLRVVPVVSHEEGAWT--------------- 171 (224)
T ss_pred ---------------CCCCEEEEEecCChhhh-cChHHHHHHHHhC--CCeEEEEEeCCCCCccC---------------
Confidence 24689999999999997 6778888876543 35667666664321100
Q ss_pred cCCccccccCcccccccCCChHHHHHHHHhhCCCCcEEEEEeCChhHHHHHHHHHHhhcCCCCceEEEEecCC
Q 042007 772 KNGVDIVSESRIKTHFARPNWRKVFGQLATDHESSRIGVFYCGSATLTKTLKELCLEFSLESPTRFDFHKENF 844 (844)
Q Consensus 772 ~~~~d~~sg~~~~~~~gRPd~~~v~~~~~~~~~~~~v~V~~CGP~~m~~~vr~~~~~~~~~~~~~~~~h~E~F 844 (844)
| .+-.+.+.+.+... +.....||+|||++|++++++.+++.+- ..=.+|.|.|
T Consensus 172 --------~-------~~g~~~~~~~~~~~--~~~~~~v~vcGp~~~~~~v~~~l~~~G~---~~~~i~~e~f 224 (224)
T cd06187 172 --------G-------RRGLVTDVVGRDGP--DWADHDIYICGPPAMVDATVDALLARGA---PPERIHFDKF 224 (224)
T ss_pred --------C-------CcccHHHHHHHhcc--ccccCEEEEECCHHHHHHHHHHHHHcCC---CHHHeeccCC
Confidence 0 01111222222111 1123579999999999999999988643 2446677776
No 25
>cd06188 NADH_quinone_reductase Na+-translocating NADH:quinone oxidoreductase (Na+-NQR) FAD/NADH binding domain. (Na+-NQR) provides a means of storing redox reaction energy via the transmembrane translocation of Na2+ ions. The C-terminal domain resembles ferredoxin:NADP+ oxidoreductase, and has NADH and FAD binding sites. (Na+-NQR) is distinct from H+-translocating NADH:quinone oxidoreductases and noncoupled NADH:quinone oxidoreductases. The NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain of this group typically contains an iron-sulfur cluster binding domain.
Probab=99.95 E-value=2e-26 Score=249.12 Aligned_cols=230 Identities=17% Similarity=0.321 Sum_probs=169.9
Q ss_pred ccEEEEEEEEecCCEEEEEEeCCCC--CccCCCcEEEEEcCCC-----------------------------CCCCccCc
Q 042007 530 HKVEVIKAVIYTGNVLALYMTKPPG--FKYQSGMYLFVKCPDL-----------------------------SPFEWHPF 578 (844)
Q Consensus 530 ~~~~i~~v~~~~~~v~~l~i~~p~~--~~~~pGQyv~l~~p~~-----------------------------s~~e~HPF 578 (844)
..++|++++.+++++.+++++.|.+ +.|+||||+.|.+|.. +...+|||
T Consensus 10 ~~~~v~~~~~~~~d~~~l~l~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~y 89 (283)
T cd06188 10 WECTVISNDNVATFIKELVLKLPSGEEIAFKAGGYIQIEIPAYEIAYADFDVAEKYRADWDKFGLWQLVFKHDEPVSRAY 89 (283)
T ss_pred EEEEEEEcccccchhhheEEecCCCceeeecCCceEEEEcCCccccccccccchhhhhHHhhhcccccccccCCcccccc
Confidence 4577888999999999999998765 7899999999999853 11235999
Q ss_pred ccccCCC-CCceEEEEEe-----------cCCchHHHHHHHHhhcCCCCCCCCCCCcchhhhhhhhhccccccccccCcC
Q 042007 579 SITSAPG-DYYLSVHIRT-----------LGDWTTELKQRFEKVCEAPAPAKPNRGNLMRMETKSAANNANFEQIQASFP 646 (844)
Q Consensus 579 TI~s~p~-~~~l~l~Ir~-----------~G~~T~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 646 (844)
||+|+|. ++.++|+||. .|..|+.|.++ ++| .
T Consensus 90 Sias~p~~~~~l~l~vk~~~~~~~~~~~~~G~~S~~L~~l-----------~~G-------------------------d 133 (283)
T cd06188 90 SLANYPAEEGELKLNVRIATPPPGNSDIPPGIGSSYIFNL-----------KPG-------------------------D 133 (283)
T ss_pred CcCCCCCCCCeEEEEEEEeccCCccCCCCCceehhHHhcC-----------CCC-------------------------C
Confidence 9999996 5789999996 57788888763 456 6
Q ss_pred EEEEeCccCCCCCCCCCCCeEEEEEcccchhchHHHHHHHHHHhhhcCcchhhhcCCCCCCCcEEEEEEEeCCCChhhhH
Q 042007 647 KILIKGPYGAPAQDYKNYDILLLIGLGIGATPFISIIKDLLNHIKSHERDTEFLENGFKKGPERAYFYWVTREQGSFEWF 726 (844)
Q Consensus 647 ~v~IdGPyG~~~~~~~~~~~vvlVagGiGITp~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~~v~l~W~~R~~~~~~wf 726 (844)
+|.|.||||.+... ...+++|||||||||||++|++++++.... ..++++|+|++|+.+++ +|
T Consensus 134 ~v~i~gP~G~f~l~-~~~~~~vlIAgGtGItP~~s~l~~~~~~~~---------------~~~~v~l~~g~r~~~d~-~~ 196 (283)
T cd06188 134 KVTASGPFGEFFIK-DTDREMVFIGGGAGMAPLRSHIFHLLKTLK---------------SKRKISFWYGARSLKEL-FY 196 (283)
T ss_pred EEEEECcccccccc-CCCCcEEEEEecccHhHHHHHHHHHHhcCC---------------CCceEEEEEecCCHHHh-hH
Confidence 89999999998753 355789999999999999999999875421 23689999999999987 78
Q ss_pred HHHHHHHhccCCCCeEEEEEEEecccCCCChhHHHHHHHHHhhhhcCCccccccCcccccccCCChHHHHHHHHhhC-CC
Q 042007 727 KGVMDDIADHDDKNVIEMHNYLTSVYEEGDARSALIAMVQKLQHAKNGVDIVSESRIKTHFARPNWRKVFGQLATDH-ES 805 (844)
Q Consensus 727 ~~~L~~l~~~~~~~~l~i~~ylT~~~~~~d~~~~~~~~~~~~~~~~~~~d~~sg~~~~~~~gRPd~~~v~~~~~~~~-~~ 805 (844)
.++|.++++.. .++++++.+|+..+.+.. .| ..||.+ +.+.+...... ..
T Consensus 197 ~~el~~l~~~~--~~~~~~~~~s~~~~~~~~---------------------~~-----~~G~v~-~~~~~~~~~~~~~~ 247 (283)
T cd06188 197 QEEFEALEKEF--PNFKYHPVLSEPQPEDNW---------------------DG-----YTGFIH-QVLLENYLKKHPAP 247 (283)
T ss_pred HHHHHHHHHHC--CCeEEEEEECCCCccCCC---------------------CC-----cceeec-HHHHHHHhccCCCC
Confidence 89998887643 256666666653211110 00 113433 22333333222 12
Q ss_pred CcEEEEEeCChhHHHHHHHHHHhhcCCCCceEEEEecCC
Q 042007 806 SRIGVFYCGSATLTKTLKELCLEFSLESPTRFDFHKENF 844 (844)
Q Consensus 806 ~~v~V~~CGP~~m~~~vr~~~~~~~~~~~~~~~~h~E~F 844 (844)
.+..||+|||++|++++++.+++.+. ..-.+|.|.|
T Consensus 248 ~~~~vyiCGP~~m~~~~~~~l~~~Gv---~~~~i~~e~F 283 (283)
T cd06188 248 EDIEFYLCGPPPMNSAVIKMLDDLGV---PRENIAFDDF 283 (283)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHcCC---CHHHeeccCC
Confidence 35679999999999999999988643 3456788887
No 26
>cd06214 PA_degradation_oxidoreductase_like NAD(P) binding domain of ferredoxin reductase like phenylacetic acid (PA) degradation oxidoreductase. PA oxidoreductases of E. coli hydroxylate PA-CoA in the second step of PA degradation. Members of this group typically fuse a ferredoxin reductase-like domain with an iron-sulfur binding cluster domain. Ferredoxins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal portion may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and
Probab=99.94 E-value=6.4e-26 Score=239.53 Aligned_cols=230 Identities=20% Similarity=0.329 Sum_probs=172.2
Q ss_pred ccEEEEEEEEecCCEEEEEEeCCCC----CccCCCcEEEEEcCCCCCCCccCcccccCCCCCceEEEEEec--CCchHHH
Q 042007 530 HKVEVIKAVIYTGNVLALYMTKPPG----FKYQSGMYLFVKCPDLSPFEWHPFSITSAPGDYYLSVHIRTL--GDWTTEL 603 (844)
Q Consensus 530 ~~~~i~~v~~~~~~v~~l~i~~p~~----~~~~pGQyv~l~~p~~s~~e~HPFTI~s~p~~~~l~l~Ir~~--G~~T~~L 603 (844)
+.++|++++.+++++.+++++.|.+ +.|+||||+.|.+|..+...+|||||+|.|+++.++|+||.. |..|..|
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~v~l~~~~~g~~~~r~ysi~s~~~~~~l~~~i~~~~~G~~s~~l 81 (241)
T cd06214 2 HPLTVAEVVRETADAVSITFDVPEELRDAFRYRPGQFLTLRVPIDGEEVRRSYSICSSPGDDELRITVKRVPGGRFSNWA 81 (241)
T ss_pred ceEEEEEEEecCCCeEEEEEecCcccCCCCCcCCCCeEEEEeecCCCeeeeeeeecCCCCCCcEEEEEEEcCCCccchhH
Confidence 4678899999999999999998764 589999999999986555688999999999888999999997 7788888
Q ss_pred HHHHHhhcCCCCCCCCCCCcchhhhhhhhhccccccccccCcCEEEEeCccCCCCCCCC-CCCeEEEEEcccchhchHHH
Q 042007 604 KQRFEKVCEAPAPAKPNRGNLMRMETKSAANNANFEQIQASFPKILIKGPYGAPAQDYK-NYDILLLIGLGIGATPFISI 682 (844)
Q Consensus 604 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IdGPyG~~~~~~~-~~~~vvlVagGiGITp~lsi 682 (844)
.+.+ ++| ..+.|.||+|.+..... .++++||||||+||||++++
T Consensus 82 ~~~~----------~~G-------------------------~~v~i~gP~G~~~~~~~~~~~~~llia~GtGiap~~~~ 126 (241)
T cd06214 82 NDEL----------KAG-------------------------DTLEVMPPAGRFTLPPLPGARHYVLFAAGSGITPVLSI 126 (241)
T ss_pred Hhcc----------CCC-------------------------CEEEEeCCccccccCCCCCCCcEEEEecccChhhHHHH
Confidence 7532 355 57999999998764333 47899999999999999999
Q ss_pred HHHHHHHhhhcCcchhhhcCCCCCCCcEEEEEEEeCCCChhhhHHHHHHHHhccCCCCeEEEEEEEecccCCCChhHHHH
Q 042007 683 IKDLLNHIKSHERDTEFLENGFKKGPERAYFYWVTREQGSFEWFKGVMDDIADHDDKNVIEMHNYLTSVYEEGDARSALI 762 (844)
Q Consensus 683 l~~l~~~~~~~~~~~~~~~~~~~~~~~~v~l~W~~R~~~~~~wf~~~L~~l~~~~~~~~l~i~~ylT~~~~~~d~~~~~~ 762 (844)
++++.... ..++++++|++|+.+++ +|.++++++.+.. ...++++.++|+.....
T Consensus 127 ~~~~~~~~----------------~~~~v~l~~~~r~~~~~-~~~~~l~~l~~~~-~~~~~~~~~~~~~~~~~------- 181 (241)
T cd06214 127 LKTALARE----------------PASRVTLVYGNRTEASV-IFREELADLKARY-PDRLTVIHVLSREQGDP------- 181 (241)
T ss_pred HHHHHhcC----------------CCCcEEEEEEeCCHHHh-hHHHHHHHHHHhC-cCceEEEEEecCCCCCc-------
Confidence 99987652 24679999999999998 8889998886542 23677766666421110
Q ss_pred HHHHHhhhhcCCccccccCcccccccCCChHHHHHHHHhh--CCCCcEEEEEeCChhHHHHHHHHHHhhcCCCCceEEEE
Q 042007 763 AMVQKLQHAKNGVDIVSESRIKTHFARPNWRKVFGQLATD--HESSRIGVFYCGSATLTKTLKELCLEFSLESPTRFDFH 840 (844)
Q Consensus 763 ~~~~~~~~~~~~~d~~sg~~~~~~~gRPd~~~v~~~~~~~--~~~~~v~V~~CGP~~m~~~vr~~~~~~~~~~~~~~~~h 840 (844)
..+.||++.. ++.+.... .+.....||+|||++|++.+++.+.+.+- ..=.+|
T Consensus 182 ---------------------~~~~g~~~~~-~~~~~~~~~~~~~~~~~v~icGp~~mv~~v~~~l~~~G~---~~~~i~ 236 (241)
T cd06214 182 ---------------------DLLRGRLDAA-KLNALLKNLLDATEFDEAFLCGPEPMMDAVEAALLELGV---PAERIH 236 (241)
T ss_pred ---------------------ccccCccCHH-HHHHhhhhhcccccCcEEEEECCHHHHHHHHHHHHHcCC---CHHHee
Confidence 0012666532 23333221 12234689999999999999999987543 234566
Q ss_pred ecCC
Q 042007 841 KENF 844 (844)
Q Consensus 841 ~E~F 844 (844)
.|.|
T Consensus 237 ~e~f 240 (241)
T cd06214 237 RELF 240 (241)
T ss_pred cccc
Confidence 6766
No 27
>cd00322 FNR_like Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in many organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in
Probab=99.94 E-value=4.2e-26 Score=237.64 Aligned_cols=209 Identities=21% Similarity=0.320 Sum_probs=159.5
Q ss_pred EEEecCCEEEEEEeCCCCCccCCCcEEEEEcCCCCCCCccCcccccCCCC-CceEEEEEec--CCchHHHHHHHHhhcCC
Q 042007 537 AVIYTGNVLALYMTKPPGFKYQSGMYLFVKCPDLSPFEWHPFSITSAPGD-YYLSVHIRTL--GDWTTELKQRFEKVCEA 613 (844)
Q Consensus 537 v~~~~~~v~~l~i~~p~~~~~~pGQyv~l~~p~~s~~e~HPFTI~s~p~~-~~l~l~Ir~~--G~~T~~L~~~~~~~~~~ 613 (844)
++.+++++.++++..|..+.|+||||+.|.+|..+...+|||||+|+|.+ +.++|+||.. |.+|+.|.++
T Consensus 3 ~~~~~~~~~~~~l~~~~~~~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~~~~~~~l~vk~~~~G~~s~~l~~~------- 75 (223)
T cd00322 3 TEDVTDDVRLFRLQLPNGFSFKPGQYVDLHLPGDGRGLRRAYSIASSPDEEGELELTVKIVPGGPFSAWLHDL------- 75 (223)
T ss_pred eEEecCCeEEEEEecCCCCCcCCCcEEEEEecCCCCcceeeeeccCCCCCCCeEEEEEEEeCCCchhhHHhcC-------
Confidence 45667899999999887788999999999999765678999999999976 8999999999 9999999865
Q ss_pred CCCCCCCCCcchhhhhhhhhccccccccccCcCEEEEeCccCCCCCCCCCCCeEEEEEcccchhchHHHHHHHHHHhhhc
Q 042007 614 PAPAKPNRGNLMRMETKSAANNANFEQIQASFPKILIKGPYGAPAQDYKNYDILLLIGLGIGATPFISIIKDLLNHIKSH 693 (844)
Q Consensus 614 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IdGPyG~~~~~~~~~~~vvlVagGiGITp~lsil~~l~~~~~~~ 693 (844)
++| .++.|.||||.+......++++||||||+||||++|+++++....
T Consensus 76 ----~~G-------------------------~~v~i~gP~G~~~~~~~~~~~~v~ia~G~Giap~~~~l~~~~~~~--- 123 (223)
T cd00322 76 ----KPG-------------------------DEVEVSGPGGDFFLPLEESGPVVLIAGGIGITPFRSMLRHLAADK--- 123 (223)
T ss_pred ----CCC-------------------------CEEEEECCCcccccCcccCCcEEEEecCCchhHHHHHHHHHHhhC---
Confidence 245 689999999998544567789999999999999999999997652
Q ss_pred CcchhhhcCCCCCCCcEEEEEEEeCCCChhhhHHHHHHHHhccCCCCeEEEEEEEecccCCCChhHHHHHHHHHhhhhcC
Q 042007 694 ERDTEFLENGFKKGPERAYFYWVTREQGSFEWFKGVMDDIADHDDKNVIEMHNYLTSVYEEGDARSALIAMVQKLQHAKN 773 (844)
Q Consensus 694 ~~~~~~~~~~~~~~~~~v~l~W~~R~~~~~~wf~~~L~~l~~~~~~~~l~i~~ylT~~~~~~d~~~~~~~~~~~~~~~~~ 773 (844)
...+++++|++|+.+++ +|.++|.++++.. .+++++.++++.......
T Consensus 124 -------------~~~~v~l~~~~r~~~~~-~~~~el~~l~~~~--~~~~~~~~~~~~~~~~~~---------------- 171 (223)
T cd00322 124 -------------PGGEITLLYGARTPADL-LFLDELEELAKEG--PNFRLVLALSRESEAKLG---------------- 171 (223)
T ss_pred -------------CCCcEEEEEecCCHHHh-hHHHHHHHHHHhC--CCeEEEEEecCCCCCCCc----------------
Confidence 24689999999999987 8888998887632 357777776653221100
Q ss_pred CccccccCcccccccCCChHHHHHHHHhhCCCCcEEEEEeCChhHHHHHHHHHHhhc
Q 042007 774 GVDIVSESRIKTHFARPNWRKVFGQLATDHESSRIGVFYCGSATLTKTLKELCLEFS 830 (844)
Q Consensus 774 ~~d~~sg~~~~~~~gRPd~~~v~~~~~~~~~~~~v~V~~CGP~~m~~~vr~~~~~~~ 830 (844)
..++......+..... ......||+|||++|++.+++.+.+.+
T Consensus 172 ------------~~~~~~~~~~~~~~~~--~~~~~~~yvCGp~~m~~~~~~~L~~~g 214 (223)
T cd00322 172 ------------PGGRIDREAEILALLP--DDSGALVYICGPPAMAKAVREALVSLG 214 (223)
T ss_pred ------------ccceeeHHHHHHhhcc--cccCCEEEEECCHHHHHHHHHHHHHcC
Confidence 0011111111111111 123457999999999999999988764
No 28
>TIGR02160 PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase, PaaK subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=99.94 E-value=8.2e-26 Score=252.04 Aligned_cols=230 Identities=18% Similarity=0.268 Sum_probs=169.8
Q ss_pred ccEEEEEEEEecCCEEEEEEeCCC----CCccCCCcEEEEEcCCCCCCCccCcccccCCCCCceEEEEEec--CCchHHH
Q 042007 530 HKVEVIKAVIYTGNVLALYMTKPP----GFKYQSGMYLFVKCPDLSPFEWHPFSITSAPGDYYLSVHIRTL--GDWTTEL 603 (844)
Q Consensus 530 ~~~~i~~v~~~~~~v~~l~i~~p~----~~~~~pGQyv~l~~p~~s~~e~HPFTI~s~p~~~~l~l~Ir~~--G~~T~~L 603 (844)
+.++|.+++.+++++.+++|..|. .+.|+||||+.|.+|.-+...+|||||+|.|+++.++|+||.. |..|..|
T Consensus 2 ~~~~V~~i~~~t~~~~~l~l~~~~~~~~~~~~~pGQ~v~l~~~~~g~~~~R~ySi~s~p~~~~l~i~vk~~~~G~~S~~l 81 (352)
T TIGR02160 2 HRLTVAEVERLTADAVAISFEIPDELAEDYRFAPGQHLTLRREVDGEELRRSYSICSAPAPGEIRVAVKKIPGGLFSTWA 81 (352)
T ss_pred eEeEEEEEEecCCCeEEEEEeCCccccccCCCCCCCeEEEEEecCCcEeeeeccccCCCCCCcEEEEEEEeCCCcchHHH
Confidence 467889999999999999998764 3689999999999974444568999999999888999999987 5678888
Q ss_pred HHHHHhhcCCCCCCCCCCCcchhhhhhhhhccccccccccCcCEEEEeCccCCCCCCCC--CCCeEEEEEcccchhchHH
Q 042007 604 KQRFEKVCEAPAPAKPNRGNLMRMETKSAANNANFEQIQASFPKILIKGPYGAPAQDYK--NYDILLLIGLGIGATPFIS 681 (844)
Q Consensus 604 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IdGPyG~~~~~~~--~~~~vvlVagGiGITp~ls 681 (844)
.+.+ ++| .++.|.||+|.+..+.. ..+++||||||+||||++|
T Consensus 82 ~~~l----------~~G-------------------------d~v~v~gP~G~f~~~~~~~~~~~~lliagG~GItP~~s 126 (352)
T TIGR02160 82 NDEI----------RPG-------------------------DTLEVMAPQGLFTPDLSTPHAGHYVAVAAGSGITPMLS 126 (352)
T ss_pred HhcC----------CCC-------------------------CEEEEeCCceeeecCCCccccccEEEEeccccHhHHHH
Confidence 7543 356 67999999998754322 3478999999999999999
Q ss_pred HHHHHHHHhhhcCcchhhhcCCCCCCCcEEEEEEEeCCCChhhhHHHHHHHHhccCCCCeEEEEEEEecccCCCChhHHH
Q 042007 682 IIKDLLNHIKSHERDTEFLENGFKKGPERAYFYWVTREQGSFEWFKGVMDDIADHDDKNVIEMHNYLTSVYEEGDARSAL 761 (844)
Q Consensus 682 il~~l~~~~~~~~~~~~~~~~~~~~~~~~v~l~W~~R~~~~~~wf~~~L~~l~~~~~~~~l~i~~ylT~~~~~~d~~~~~ 761 (844)
++++++... ...+|+|+|++|+.+++ +|.++|+++++.. ...+.++..+++.....+
T Consensus 127 ~l~~~~~~~----------------~~~~v~l~~~~r~~~d~-~~~~el~~l~~~~-~~~~~~~~~~s~~~~~~~----- 183 (352)
T TIGR02160 127 IAETVLAAE----------------PRSTFTLVYGNRRTASV-MFAEELADLKDKH-PQRFHLAHVLSREPREAP----- 183 (352)
T ss_pred HHHHHHhcC----------------CCceEEEEEEeCCHHHH-HHHHHHHHHHHhC-cCcEEEEEEecCCCcCcc-----
Confidence 999987642 24689999999999997 8889999887543 235777766665321111
Q ss_pred HHHHHHhhhhcCCccccccCcccccccCCChHHHHHHHHhhC--CCCcEEEEEeCChhHHHHHHHHHHhhcCCCCceEEE
Q 042007 762 IAMVQKLQHAKNGVDIVSESRIKTHFARPNWRKVFGQLATDH--ESSRIGVFYCGSATLTKTLKELCLEFSLESPTRFDF 839 (844)
Q Consensus 762 ~~~~~~~~~~~~~~d~~sg~~~~~~~gRPd~~~v~~~~~~~~--~~~~v~V~~CGP~~m~~~vr~~~~~~~~~~~~~~~~ 839 (844)
...||.+... +.+..... ......||+|||++|++++++.+.+.+.. .-.+
T Consensus 184 -----------------------~~~gr~~~~~-l~~~l~~~~~~~~~~~vyiCGp~~m~~~v~~~L~~~Gv~---~~~i 236 (352)
T TIGR02160 184 -----------------------LLSGRLDGER-LAALLDSLIDVDRADEWFLCGPQAMVDDAEQALTGLGVP---AGRV 236 (352)
T ss_pred -----------------------cccCccCHHH-HHHHHHhccCcccCCEEEEECCHHHHHHHHHHHHHcCCC---HHHE
Confidence 0126776432 22222211 12234799999999999999999876432 3345
Q ss_pred EecCC
Q 042007 840 HKENF 844 (844)
Q Consensus 840 h~E~F 844 (844)
|.|.|
T Consensus 237 ~~E~F 241 (352)
T TIGR02160 237 HLELF 241 (352)
T ss_pred EEEec
Confidence 66665
No 29
>cd06196 FNR_like_1 Ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal region may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=99.94 E-value=6.9e-26 Score=235.56 Aligned_cols=205 Identities=23% Similarity=0.357 Sum_probs=157.7
Q ss_pred cEEEEEEEEecCCEEEEEEeCCCCCccCCCcEEEEEcCCCC-CCCccCcccccCCCCCceEEEEEec---CCchHHHHHH
Q 042007 531 KVEVIKAVIYTGNVLALYMTKPPGFKYQSGMYLFVKCPDLS-PFEWHPFSITSAPGDYYLSVHIRTL---GDWTTELKQR 606 (844)
Q Consensus 531 ~~~i~~v~~~~~~v~~l~i~~p~~~~~~pGQyv~l~~p~~s-~~e~HPFTI~s~p~~~~l~l~Ir~~---G~~T~~L~~~ 606 (844)
.++|++++.+++++.++++..|..+.|+||||+.|.++..+ ..++|||||+|.|+++.+.|+||.. |++|+.|.++
T Consensus 2 ~~~v~~~~~~~~~~~~~~l~~~~~~~~~pGQ~v~l~~~~~~~~~~~r~ySi~s~~~~~~l~~~vk~~~~~g~~s~~l~~l 81 (218)
T cd06196 2 TVTLLSIEPVTHDVKRLRFDKPEGYDFTPGQATEVAIDKPGWRDEKRPFTFTSLPEDDVLEFVIKSYPDHDGVTEQLGRL 81 (218)
T ss_pred ceEEEEEEEcCCCeEEEEEcCCCcCCCCCCCEEEEEeeCCCCCccccccccccCCCCCeEEEEEEEcCCCCcHhHHHHhC
Confidence 46788999999999999999988899999999999997644 3478999999999889999999986 7789888653
Q ss_pred HHhhcCCCCCCCCCCCcchhhhhhhhhccccccccccCcCEEEEeCccCCCCCCCCCCCeEEEEEcccchhchHHHHHHH
Q 042007 607 FEKVCEAPAPAKPNRGNLMRMETKSAANNANFEQIQASFPKILIKGPYGAPAQDYKNYDILLLIGLGIGATPFISIIKDL 686 (844)
Q Consensus 607 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IdGPyG~~~~~~~~~~~vvlVagGiGITp~lsil~~l 686 (844)
++| .++.|.||||.+.. .+++||||||+||||++|+++++
T Consensus 82 -----------~~G-------------------------~~v~i~gP~G~~~~----~~~~vlia~GtGiaP~~s~l~~~ 121 (218)
T cd06196 82 -----------QPG-------------------------DTLLIEDPWGAIEY----KGPGVFIAGGAGITPFIAILRDL 121 (218)
T ss_pred -----------CCC-------------------------CEEEEECCccceEe----cCceEEEecCCCcChHHHHHHHH
Confidence 356 67999999998742 25789999999999999999998
Q ss_pred HHHhhhcCcchhhhcCCCCCCCcEEEEEEEeCCCChhhhHHHHHHHHhccCCCCeEEEEEEEecccCCCChhHHHHHHHH
Q 042007 687 LNHIKSHERDTEFLENGFKKGPERAYFYWVTREQGSFEWFKGVMDDIADHDDKNVIEMHNYLTSVYEEGDARSALIAMVQ 766 (844)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~~~~~~~v~l~W~~R~~~~~~wf~~~L~~l~~~~~~~~l~i~~ylT~~~~~~d~~~~~~~~~~ 766 (844)
.... ..++++|+|++|+.+++ ++.++|+++.. +.+..++|+.... .
T Consensus 122 ~~~~----------------~~~~v~l~~~~r~~~~~-~~~~el~~l~~------~~~~~~~s~~~~~-~---------- 167 (218)
T cd06196 122 AAKG----------------KLEGNTLIFANKTEKDI-ILKDELEKMLG------LKFINVVTDEKDP-G---------- 167 (218)
T ss_pred HhCC----------------CCceEEEEEecCCHHHH-hhHHHHHHhhc------ceEEEEEcCCCCC-C----------
Confidence 7632 24679999999999987 78888887742 3444555542110 0
Q ss_pred HhhhhcCCccccccCcccccccCCChHHHHHHHHhhCCCCcEEEEEeCChhHHHHHHHHHHhhcC
Q 042007 767 KLQHAKNGVDIVSESRIKTHFARPNWRKVFGQLATDHESSRIGVFYCGSATLTKTLKELCLEFSL 831 (844)
Q Consensus 767 ~~~~~~~~~d~~sg~~~~~~~gRPd~~~v~~~~~~~~~~~~v~V~~CGP~~m~~~vr~~~~~~~~ 831 (844)
...||.+ .+++++.... ....||+|||++|++++++.+.+.+-
T Consensus 168 ------------------~~~g~~~-~~~l~~~~~~---~~~~vyiCGp~~m~~~~~~~l~~~G~ 210 (218)
T cd06196 168 ------------------YAHGRID-KAFLKQHVTD---FNQHFYVCGPPPMEEAINGALKELGV 210 (218)
T ss_pred ------------------eeeeEEC-HHHHHHhcCC---CCCEEEEECCHHHHHHHHHHHHHcCC
Confidence 0125555 2344443221 12469999999999999999988653
No 30
>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional
Probab=99.94 E-value=1.1e-25 Score=248.77 Aligned_cols=225 Identities=19% Similarity=0.262 Sum_probs=167.9
Q ss_pred ccEEEEEEEEecCCEEEEEEeCCCCCccCCCcEEEEEcCCCCCCCccCcccccCCCC-CceEEEEEec--CCchHHHHHH
Q 042007 530 HKVEVIKAVIYTGNVLALYMTKPPGFKYQSGMYLFVKCPDLSPFEWHPFSITSAPGD-YYLSVHIRTL--GDWTTELKQR 606 (844)
Q Consensus 530 ~~~~i~~v~~~~~~v~~l~i~~p~~~~~~pGQyv~l~~p~~s~~e~HPFTI~s~p~~-~~l~l~Ir~~--G~~T~~L~~~ 606 (844)
+.++|++++.+.+++..+++..+..+.|+||||+.|.+|.. ...+|||||+|.|.+ +.++|+||.. |..|+.|.+.
T Consensus 10 ~~~~V~~i~~~t~~v~~l~l~~~~~~~f~pGQfv~l~~~~~-~~~~R~ySias~p~~~~~l~i~Vk~~~~G~~S~~L~~~ 88 (332)
T PRK10684 10 NRMQVHSIVQETPDVWTISLICHDFYPYRAGQYALVSIRNS-AETLRAYTLSSTPGVSEFITLTVRRIDDGVGSQWLTRD 88 (332)
T ss_pred eeEEEEEEEccCCCeEEEEEcCCCCCCcCCCCEEEEEecCC-CEeeeeecccCCCCCCCcEEEEEEEcCCCcchhHHHhc
Confidence 36778889999999999999877788999999999999853 235799999999964 6799999997 7789888754
Q ss_pred HHhhcCCCCCCCCCCCcchhhhhhhhhccccccccccCcCEEEEeCccCCCCCCCCCCCeEEEEEcccchhchHHHHHHH
Q 042007 607 FEKVCEAPAPAKPNRGNLMRMETKSAANNANFEQIQASFPKILIKGPYGAPAQDYKNYDILLLIGLGIGATPFISIIKDL 686 (844)
Q Consensus 607 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IdGPyG~~~~~~~~~~~vvlVagGiGITp~lsil~~l 686 (844)
+ ++| .++.|.||+|.+..+....+++|||||||||||++|+++++
T Consensus 89 l----------~~G-------------------------d~v~v~gP~G~f~l~~~~~~~~vliAgG~GItP~~sml~~~ 133 (332)
T PRK10684 89 V----------KRG-------------------------DYLWLSDAMGEFTCDDKAEDKYLLLAAGCGVTPIMSMRRWL 133 (332)
T ss_pred C----------CCC-------------------------CEEEEeCCccccccCCCCCCcEEEEecCcCcchHHHHHHHH
Confidence 3 456 68999999999864434567899999999999999999998
Q ss_pred HHHhhhcCcchhhhcCCCCCCCcEEEEEEEeCCCChhhhHHHHHHHHhccCCCCeEEEEEEEecccCCCChhHHHHHHHH
Q 042007 687 LNHIKSHERDTEFLENGFKKGPERAYFYWVTREQGSFEWFKGVMDDIADHDDKNVIEMHNYLTSVYEEGDARSALIAMVQ 766 (844)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~~~~~~~v~l~W~~R~~~~~~wf~~~L~~l~~~~~~~~l~i~~ylT~~~~~~d~~~~~~~~~~ 766 (844)
+... ..++++|+|++|+.+++ .|.++|+++++... .+.++++.++.. .
T Consensus 134 ~~~~----------------~~~~v~l~y~~r~~~~~-~~~~el~~l~~~~~--~~~~~~~~~~~~---~---------- 181 (332)
T PRK10684 134 LKNR----------------PQADVQVIFNVRTPQDV-IFADEWRQLKQRYP--QLNLTLVAENNA---T---------- 181 (332)
T ss_pred HhcC----------------CCCCEEEEEeCCChHHh-hhHHHHHHHHHHCC--CeEEEEEeccCC---C----------
Confidence 7542 24689999999999997 68899988876432 355554443210 0
Q ss_pred HhhhhcCCccccccCcccccccCCChHHHHHHHHhhCCCCcEEEEEeCChhHHHHHHHHHHhhcCCCCceEEEEecCC
Q 042007 767 KLQHAKNGVDIVSESRIKTHFARPNWRKVFGQLATDHESSRIGVFYCGSATLTKTLKELCLEFSLESPTRFDFHKENF 844 (844)
Q Consensus 767 ~~~~~~~~~d~~sg~~~~~~~gRPd~~~v~~~~~~~~~~~~v~V~~CGP~~m~~~vr~~~~~~~~~~~~~~~~h~E~F 844 (844)
.| ...||.+.. ++.+..... ....||+|||++|++++++.+.+.+. ..-.+|.|.|
T Consensus 182 ------------~~----~~~grl~~~-~l~~~~~~~--~~~~vyiCGP~~m~~~v~~~l~~~Gv---~~~~i~~E~F 237 (332)
T PRK10684 182 ------------EG----FIAGRLTRE-LLQQAVPDL--ASRTVMTCGPAPYMDWVEQEVKALGV---TADRFFKEKF 237 (332)
T ss_pred ------------CC----ccccccCHH-HHHHhcccc--cCCEEEEECCHHHHHHHHHHHHHcCC---CHHHeEeecc
Confidence 00 112677643 333322211 12469999999999999999887543 2345677776
No 31
>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
Probab=99.94 E-value=7.6e-26 Score=251.01 Aligned_cols=226 Identities=19% Similarity=0.314 Sum_probs=167.2
Q ss_pred cccEEEEEEEEecCCEEEEEEeCC--CCCccCCCcEEEEEcCCCCCCCccCcccccCCCC-CceEEEEEec--CCchHHH
Q 042007 529 NHKVEVIKAVIYTGNVLALYMTKP--PGFKYQSGMYLFVKCPDLSPFEWHPFSITSAPGD-YYLSVHIRTL--GDWTTEL 603 (844)
Q Consensus 529 ~~~~~i~~v~~~~~~v~~l~i~~p--~~~~~~pGQyv~l~~p~~s~~e~HPFTI~s~p~~-~~l~l~Ir~~--G~~T~~L 603 (844)
...++|++++.+++++.+|++..| ..+.|+||||+.|.+|.. ++|||||+|.|++ +.++|+||.. |.+|+.|
T Consensus 102 ~~~~~V~~~~~~~~d~~~l~l~~~~~~~~~~~pGQfv~l~~~~~---~~R~ySias~p~~~~~l~~~ik~~~~G~~s~~l 178 (339)
T PRK07609 102 KLPCRVASLERVAGDVMRLKLRLPATERLQYLAGQYIEFILKDG---KRRSYSIANAPHSGGPLELHIRHMPGGVFTDHV 178 (339)
T ss_pred EEEEEEEEEEcCCCcEEEEEEEcCCCCCCccCCCCeEEEECCCC---ceeeeecCCCCCCCCEEEEEEEecCCCccHHHH
Confidence 356889999999999999999876 357899999999999863 6899999999975 7899999976 7788888
Q ss_pred HHHHHhhcCCCCCCCCCCCcchhhhhhhhhccccccccccCcCEEEEeCccCCCCCCCCCCCeEEEEEcccchhchHHHH
Q 042007 604 KQRFEKVCEAPAPAKPNRGNLMRMETKSAANNANFEQIQASFPKILIKGPYGAPAQDYKNYDILLLIGLGIGATPFISII 683 (844)
Q Consensus 604 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IdGPyG~~~~~~~~~~~vvlVagGiGITp~lsil 683 (844)
.+.+ ++| ..+.|+||||.+..+....+++||||||+||||++|++
T Consensus 179 ~~~l----------~~G-------------------------~~v~v~gP~G~~~~~~~~~~~ivlIagGtGiaP~~s~l 223 (339)
T PRK07609 179 FGAL----------KER-------------------------DILRIEGPLGTFFLREDSDKPIVLLASGTGFAPIKSIV 223 (339)
T ss_pred HHhc----------cCC-------------------------CEEEEEcCceeEEecCCCCCCEEEEecCcChhHHHHHH
Confidence 7643 356 57999999999875434567899999999999999999
Q ss_pred HHHHHHhhhcCcchhhhcCCCCCCCcEEEEEEEeCCCChhhhHHHHHHHHhccCCCCeEEEEEEEecccCCCChhHHHHH
Q 042007 684 KDLLNHIKSHERDTEFLENGFKKGPERAYFYWVTREQGSFEWFKGVMDDIADHDDKNVIEMHNYLTSVYEEGDARSALIA 763 (844)
Q Consensus 684 ~~l~~~~~~~~~~~~~~~~~~~~~~~~v~l~W~~R~~~~~~wf~~~L~~l~~~~~~~~l~i~~ylT~~~~~~d~~~~~~~ 763 (844)
++++... ..++|+|+|++|+.+++ .+.++++++++.. .+++++..+++..++...
T Consensus 224 ~~~~~~~----------------~~~~i~l~~g~r~~~dl-~~~e~l~~~~~~~--~~~~~~~~~s~~~~~~~~------ 278 (339)
T PRK07609 224 EHLRAKG----------------IQRPVTLYWGARRPEDL-YLSALAEQWAEEL--PNFRYVPVVSDALDDDAW------ 278 (339)
T ss_pred HHHHhcC----------------CCCcEEEEEecCChHHh-ccHHHHHHHHHhC--CCeEEEEEecCCCCCCCc------
Confidence 9997642 24679999999999987 6677777776543 357777777653221110
Q ss_pred HHHHhhhhcCCccccccCcccccccCCChHHHHHHHHhhCCCCcEEEEEeCChhHHHHHHHHHHhhcCCCCceEEEEecC
Q 042007 764 MVQKLQHAKNGVDIVSESRIKTHFARPNWRKVFGQLATDHESSRIGVFYCGSATLTKTLKELCLEFSLESPTRFDFHKEN 843 (844)
Q Consensus 764 ~~~~~~~~~~~~d~~sg~~~~~~~gRPd~~~v~~~~~~~~~~~~v~V~~CGP~~m~~~vr~~~~~~~~~~~~~~~~h~E~ 843 (844)
.| +.|+.+ +.+++.+.. .....||+|||++|++++++.+.+.+- ..-.+|.|.
T Consensus 279 ---------------~g-----~~G~v~-~~~~~~~~~---~~~~~vy~CGp~~m~~~~~~~l~~~G~---~~~~i~~e~ 331 (339)
T PRK07609 279 ---------------TG-----RTGFVH-QAVLEDFPD---LSGHQVYACGSPVMVYAARDDFVAAGL---PAEEFFADA 331 (339)
T ss_pred ---------------cC-----ccCcHH-HHHHhhccc---ccCCEEEEECCHHHHHHHHHHHHHcCC---CHHHeEEee
Confidence 00 013322 112222111 123579999999999999999987543 234567777
Q ss_pred C
Q 042007 844 F 844 (844)
Q Consensus 844 F 844 (844)
|
T Consensus 332 F 332 (339)
T PRK07609 332 F 332 (339)
T ss_pred c
Confidence 6
No 32
>PRK11872 antC anthranilate dioxygenase reductase; Provisional
Probab=99.94 E-value=2e-25 Score=247.08 Aligned_cols=225 Identities=16% Similarity=0.272 Sum_probs=166.7
Q ss_pred ccccEEEEEEEEecCCEEEEEEeCC---CCCccCCCcEEEEEcCCCCCCCccCcccccCCC-CCceEEEEEec--CCchH
Q 042007 528 LNHKVEVIKAVIYTGNVLALYMTKP---PGFKYQSGMYLFVKCPDLSPFEWHPFSITSAPG-DYYLSVHIRTL--GDWTT 601 (844)
Q Consensus 528 ~~~~~~i~~v~~~~~~v~~l~i~~p---~~~~~~pGQyv~l~~p~~s~~e~HPFTI~s~p~-~~~l~l~Ir~~--G~~T~ 601 (844)
....++|++++.+++++.+|++..| +.+.|+||||+.|.+|+. -.+|||||+|.|. ++.++|+||.. |.+|.
T Consensus 105 ~~~~~~V~~i~~~s~di~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~--~~~R~ySias~p~~~~~l~~~ik~~~~G~~s~ 182 (340)
T PRK11872 105 LKISGVVTAVELVSETTAILHLDASAHGRQLDFLPGQYARLQIPGT--DDWRSYSFANRPNATNQLQFLIRLLPDGVMSN 182 (340)
T ss_pred ceeeEEEEEEEecCCCeEEEEEEcCCCCCccCcCCCCEEEEEeCCC--CceeecccCCCCCCCCeEEEEEEECCCCcchh
Confidence 3356889999999999999999876 567899999999999864 3589999999996 57899999986 55788
Q ss_pred HHHHHHHhhcCCCCCCCCCCCcchhhhhhhhhccccccccccCcCEEEEeCccCCCCCCCCCCCeEEEEEcccchhchHH
Q 042007 602 ELKQRFEKVCEAPAPAKPNRGNLMRMETKSAANNANFEQIQASFPKILIKGPYGAPAQDYKNYDILLLIGLGIGATPFIS 681 (844)
Q Consensus 602 ~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IdGPyG~~~~~~~~~~~vvlVagGiGITp~ls 681 (844)
.|.+.+ ++| .+|.|+||||.+..+ ...+++||||||+||||++|
T Consensus 183 ~L~~~l----------~~G-------------------------~~v~i~gP~G~f~l~-~~~~~~vliagGtGiaP~~s 226 (340)
T PRK11872 183 YLRERC----------QVG-------------------------DEILFEAPLGAFYLR-EVERPLVFVAGGTGLSAFLG 226 (340)
T ss_pred hHhhCC----------CCC-------------------------CEEEEEcCcceeEeC-CCCCcEEEEeCCcCccHHHH
Confidence 887533 356 679999999998653 33478999999999999999
Q ss_pred HHHHHHHHhhhcCcchhhhcCCCCCCCcEEEEEEEeCCCChhhhHHHHHHHHhccCCCCeEEEEEEEecccCCCChhHHH
Q 042007 682 IIKDLLNHIKSHERDTEFLENGFKKGPERAYFYWVTREQGSFEWFKGVMDDIADHDDKNVIEMHNYLTSVYEEGDARSAL 761 (844)
Q Consensus 682 il~~l~~~~~~~~~~~~~~~~~~~~~~~~v~l~W~~R~~~~~~wf~~~L~~l~~~~~~~~l~i~~ylT~~~~~~d~~~~~ 761 (844)
++++++... ..++++|+|++|+.+++ .|.++|.++++.. .+++++..+++..+...
T Consensus 227 ~l~~~~~~~----------------~~~~v~l~~g~r~~~dl-~~~~el~~~~~~~--~~~~~~~~~s~~~~~~~----- 282 (340)
T PRK11872 227 MLDELAEQG----------------CSPPVHLYYGVRHAADL-CELQRLAAYAERL--PNFRYHPVVSKASADWQ----- 282 (340)
T ss_pred HHHHHHHcC----------------CCCcEEEEEecCChHHh-ccHHHHHHHHHHC--CCcEEEEEEeCCCCcCC-----
Confidence 999987642 23679999999999997 6888898887643 25777776664321100
Q ss_pred HHHHHHhhhhcCCccccccCcccccccCCChHHHHHHHHhhCCCCcEEEEEeCChhHHHHHHHHHHhhcCCCCceEEEEe
Q 042007 762 IAMVQKLQHAKNGVDIVSESRIKTHFARPNWRKVFGQLATDHESSRIGVFYCGSATLTKTLKELCLEFSLESPTRFDFHK 841 (844)
Q Consensus 762 ~~~~~~~~~~~~~~d~~sg~~~~~~~gRPd~~~v~~~~~~~~~~~~v~V~~CGP~~m~~~vr~~~~~~~~~~~~~~~~h~ 841 (844)
| ..|+.. +.+.+.... .....||+||||+|++++++.+.+.+- ..-.+|.
T Consensus 283 ------------------g-----~~g~v~-~~l~~~~l~---~~~~~vy~CGp~~mv~~~~~~L~~~Gv---~~~~i~~ 332 (340)
T PRK11872 283 ------------------G-----KRGYIH-EHFDKAQLR---DQAFDMYLCGPPPMVEAVKQWLDEQAL---ENYRLYY 332 (340)
T ss_pred ------------------C-----ceeecc-HHHHHhhcC---cCCCEEEEeCCHHHHHHHHHHHHHcCC---CHHHEEE
Confidence 0 013322 111111111 123469999999999999999987643 3446777
Q ss_pred cCC
Q 042007 842 ENF 844 (844)
Q Consensus 842 E~F 844 (844)
|.|
T Consensus 333 E~F 335 (340)
T PRK11872 333 EKF 335 (340)
T ss_pred eee
Confidence 776
No 33
>PRK13289 bifunctional nitric oxide dioxygenase/dihydropteridine reductase 2; Provisional
Probab=99.93 E-value=4e-25 Score=250.82 Aligned_cols=232 Identities=18% Similarity=0.285 Sum_probs=172.8
Q ss_pred cccEEEEEEEEecCCEEEEEEeCCC---CCccCCCcEEEEEcCCCC--CCCccCcccccCCCCCceEEEEEec--CCchH
Q 042007 529 NHKVEVIKAVIYTGNVLALYMTKPP---GFKYQSGMYLFVKCPDLS--PFEWHPFSITSAPGDYYLSVHIRTL--GDWTT 601 (844)
Q Consensus 529 ~~~~~i~~v~~~~~~v~~l~i~~p~---~~~~~pGQyv~l~~p~~s--~~e~HPFTI~s~p~~~~l~l~Ir~~--G~~T~ 601 (844)
+..++|++++.+++++.++++..|. .+.|+||||+.|.+|..+ ..+||||||+|+|+++.++|+||.. |..|.
T Consensus 154 ~~~~~V~~~~~~t~~~~~~~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~R~ySias~p~~~~l~~~Vk~~~~G~~S~ 233 (399)
T PRK13289 154 WRDFRVVKKVPESEVITSFYLEPVDGGPVADFKPGQYLGVRLDPEGEEYQEIRQYSLSDAPNGKYYRISVKREAGGKVSN 233 (399)
T ss_pred cEEEEEEEEEECCCCEEEEEEEcCCCCcCCCCCCCCeEEEEEecCCccccceeEEEeeeCCCCCeEEEEEEECCCCeehH
Confidence 4567888999999999999998654 358999999999986432 3457999999999888999999998 88999
Q ss_pred HHHHHHHhhcCCCCCCCCCCCcchhhhhhhhhccccccccccCcCEEEEeCccCCCCCCCCCCCeEEEEEcccchhchHH
Q 042007 602 ELKQRFEKVCEAPAPAKPNRGNLMRMETKSAANNANFEQIQASFPKILIKGPYGAPAQDYKNYDILLLIGLGIGATPFIS 681 (844)
Q Consensus 602 ~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IdGPyG~~~~~~~~~~~vvlVagGiGITp~ls 681 (844)
.|.+.+ ++| .+|.|.||||.+..+....+++|||||||||||++|
T Consensus 234 ~L~~~l----------~~G-------------------------d~v~v~gP~G~f~l~~~~~~~~vlIagGtGIaP~~s 278 (399)
T PRK13289 234 YLHDHV----------NVG-------------------------DVLELAAPAGDFFLDVASDTPVVLISGGVGITPMLS 278 (399)
T ss_pred HHhhcC----------CCC-------------------------CEEEEEcCccccccCCCCCCcEEEEecCccHHHHHH
Confidence 998743 456 689999999998654345678999999999999999
Q ss_pred HHHHHHHHhhhcCcchhhhcCCCCCCCcEEEEEEEeCCCChhhhHHHHHHHHhccCCCCeEEEEEEEecccCCCChhHHH
Q 042007 682 IIKDLLNHIKSHERDTEFLENGFKKGPERAYFYWVTREQGSFEWFKGVMDDIADHDDKNVIEMHNYLTSVYEEGDARSAL 761 (844)
Q Consensus 682 il~~l~~~~~~~~~~~~~~~~~~~~~~~~v~l~W~~R~~~~~~wf~~~L~~l~~~~~~~~l~i~~ylT~~~~~~d~~~~~ 761 (844)
++++++... ..++++|+|++|+.+++ .|.++|+++++.. .+++++.++++.... +.
T Consensus 279 ~l~~~~~~~----------------~~~~v~l~~~~r~~~~~-~~~~eL~~l~~~~--~~~~~~~~~s~~~~~-~~---- 334 (399)
T PRK13289 279 MLETLAAQQ----------------PKRPVHFIHAARNGGVH-AFRDEVEALAARH--PNLKAHTWYREPTEQ-DR---- 334 (399)
T ss_pred HHHHHHhcC----------------CCCCEEEEEEeCChhhc-hHHHHHHHHHHhC--CCcEEEEEECCCccc-cc----
Confidence 999987542 34689999999999997 7899999887643 257777666643211 10
Q ss_pred HHHHHHhhhhcCCccccccCcccccccCCChHHHHHHHHhhCCCCcEEEEEeCChhHHHHHHHHHHhhcCCCCceEEEEe
Q 042007 762 IAMVQKLQHAKNGVDIVSESRIKTHFARPNWRKVFGQLATDHESSRIGVFYCGSATLTKTLKELCLEFSLESPTRFDFHK 841 (844)
Q Consensus 762 ~~~~~~~~~~~~~~d~~sg~~~~~~~gRPd~~~v~~~~~~~~~~~~v~V~~CGP~~m~~~vr~~~~~~~~~~~~~~~~h~ 841 (844)
.+. ...+.||.+.+ ++.+... .....||+|||++|++++++.+.+.+-+ .=.+|.
T Consensus 335 -----------------~~~-~~~~~g~i~~~-~l~~~~~---~~~~~vyiCGp~~m~~~v~~~L~~~Gv~---~~~I~~ 389 (399)
T PRK13289 335 -----------------AGE-DFDSEGLMDLE-WLEAWLP---DPDADFYFCGPVPFMQFVAKQLLELGVP---EERIHY 389 (399)
T ss_pred -----------------cCC-cccccCcccHH-HHHhhCC---CCCCEEEEECCHHHHHHHHHHHHHcCCC---HHHeee
Confidence 000 00112676633 3333322 1245799999999999999999886432 335677
Q ss_pred cCC
Q 042007 842 ENF 844 (844)
Q Consensus 842 E~F 844 (844)
|.|
T Consensus 390 E~F 392 (399)
T PRK13289 390 EFF 392 (399)
T ss_pred ecc
Confidence 776
No 34
>cd06221 sulfite_reductase_like Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases. Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+.
Probab=99.93 E-value=6.6e-25 Score=233.18 Aligned_cols=207 Identities=20% Similarity=0.339 Sum_probs=152.5
Q ss_pred EEEEEecCCEEEEEEeCCC----CCccCCCcEEEEEcCCCCCCCccCcccccCCC-CCceEEEEEecCCchHHHHHHHHh
Q 042007 535 IKAVIYTGNVLALYMTKPP----GFKYQSGMYLFVKCPDLSPFEWHPFSITSAPG-DYYLSVHIRTLGDWTTELKQRFEK 609 (844)
Q Consensus 535 ~~v~~~~~~v~~l~i~~p~----~~~~~pGQyv~l~~p~~s~~e~HPFTI~s~p~-~~~l~l~Ir~~G~~T~~L~~~~~~ 609 (844)
.+++.+++++.+++++.+. .++|+||||+.|.+|..+ .|||||+|+|+ ++.++|+||..|.+|+.|.++
T Consensus 2 ~~i~~~t~~v~~~~l~~~~~~~~~~~~~pGQ~i~l~~~~~~---~~pySi~s~~~~~~~l~~~Ik~~G~~S~~L~~l--- 75 (253)
T cd06221 2 VEVVDETEDIKTFTLRLEDDDEELFTFKPGQFVMLSLPGVG---EAPISISSDPTRRGPLELTIRRVGRVTEALHEL--- 75 (253)
T ss_pred ceEEeccCCceEEEEEeCCCccccCCcCCCCEEEEEcCCCC---ccceEecCCCCCCCeEEEEEEeCChhhHHHHcC---
Confidence 4667788877777666543 378999999999998653 39999999997 678999999999999988753
Q ss_pred hcCCCCCCCCCCCcchhhhhhhhhccccccccccCcCEEEEeCccCCCCC-CCCCCCeEEEEEcccchhchHHHHHHHHH
Q 042007 610 VCEAPAPAKPNRGNLMRMETKSAANNANFEQIQASFPKILIKGPYGAPAQ-DYKNYDILLLIGLGIGATPFISIIKDLLN 688 (844)
Q Consensus 610 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IdGPyG~~~~-~~~~~~~vvlVagGiGITp~lsil~~l~~ 688 (844)
++| .++.|+||||.... +...++++|+||||+||||++|++++++.
T Consensus 76 --------~~G-------------------------~~v~i~gP~G~~f~~~~~~~~~iv~IA~G~GitP~ls~l~~~~~ 122 (253)
T cd06221 76 --------KPG-------------------------DTVGLRGPFGNGFPVEEMKGKDLLLVAGGLGLAPLRSLINYILD 122 (253)
T ss_pred --------CCC-------------------------CEEEEECCcCCCcccccccCCeEEEEccccchhHHHHHHHHHHh
Confidence 345 57999999998543 22257899999999999999999999986
Q ss_pred HhhhcCcchhhhcCCCCCCCcEEEEEEEeCCCChhhhHHHHHHHHhccCCCCeEEEEEEEecccCCCChhHHHHHHHHHh
Q 042007 689 HIKSHERDTEFLENGFKKGPERAYFYWVTREQGSFEWFKGVMDDIADHDDKNVIEMHNYLTSVYEEGDARSALIAMVQKL 768 (844)
Q Consensus 689 ~~~~~~~~~~~~~~~~~~~~~~v~l~W~~R~~~~~~wf~~~L~~l~~~~~~~~l~i~~ylT~~~~~~d~~~~~~~~~~~~ 768 (844)
... ..++++|+|++|+.+++ ++.++|.++++. .++.++.++++..+...
T Consensus 123 ~~~---------------~~~~i~Li~~~r~~~~~-~~~~~L~~l~~~---~~~~~~~~~s~~~~~~~------------ 171 (253)
T cd06221 123 NRE---------------DYGKVTLLYGARTPEDL-LFKEELKEWAKR---SDVEVILTVDRAEEGWT------------ 171 (253)
T ss_pred ccc---------------cCCcEEEEEecCChHHc-chHHHHHHHHhc---CCeEEEEEeCCCCCCcc------------
Confidence 421 24689999999999998 788899988764 34667666654321100
Q ss_pred hhhcCCccccccCcccccccCCChHHHHHHHHhhCCCCcEEEEEeCChhHHHHHHHHHHhhcC
Q 042007 769 QHAKNGVDIVSESRIKTHFARPNWRKVFGQLATDHESSRIGVFYCGSATLTKTLKELCLEFSL 831 (844)
Q Consensus 769 ~~~~~~~d~~sg~~~~~~~gRPd~~~v~~~~~~~~~~~~v~V~~CGP~~m~~~vr~~~~~~~~ 831 (844)
+ ..|+.+ +.+.+.... + ....||+|||++|++++++++.+.+-
T Consensus 172 -----------~-----~~g~v~--~~l~~~~~~-~-~~~~vyicGp~~mv~~~~~~L~~~Gv 214 (253)
T cd06221 172 -----------G-----NVGLVT--DLLPELTLD-P-DNTVAIVCGPPIMMRFVAKELLKLGV 214 (253)
T ss_pred -----------C-----Cccccc--hhHHhcCCC-c-CCcEEEEECCHHHHHHHHHHHHHcCC
Confidence 0 013322 223322211 1 24579999999999999999987653
No 35
>PRK10926 ferredoxin-NADP reductase; Provisional
Probab=99.93 E-value=1.1e-24 Score=230.58 Aligned_cols=216 Identities=14% Similarity=0.199 Sum_probs=156.5
Q ss_pred cccEEEEEEEEecCCEEEEEEeCCCCCccCCCcEEEEEcCCCCCCCccCcccccCCCCCceEEEEEec--CCchHHHHHH
Q 042007 529 NHKVEVIKAVIYTGNVLALYMTKPPGFKYQSGMYLFVKCPDLSPFEWHPFSITSAPGDYYLSVHIRTL--GDWTTELKQR 606 (844)
Q Consensus 529 ~~~~~i~~v~~~~~~v~~l~i~~p~~~~~~pGQyv~l~~p~~s~~e~HPFTI~s~p~~~~l~l~Ir~~--G~~T~~L~~~ 606 (844)
+..++|++++.++++++++++..|. ..|+||||+.|.++..+...+|||||+|+|+++.++++||.. |..|+.|.++
T Consensus 4 ~~~~~V~~i~~~t~~v~~l~l~~~~-~~~~pGQfv~l~~~~~g~~~~R~ySias~p~~~~l~~~ik~~~~G~~S~~L~~l 82 (248)
T PRK10926 4 WVTGKVTKVQNWTDALFSLTVHAPV-DPFTAGQFTKLGLEIDGERVQRAYSYVNAPDNPDLEFYLVTVPEGKLSPRLAAL 82 (248)
T ss_pred cEEEEEEEEEEcCCCeEEEEEeCCC-CCCCCCCEEEEEEecCCcEEEeeecccCCCCCCeEEEEEEEeCCCCcChHHHhC
Confidence 4678899999999999999998763 379999999999964344457999999999888999999996 8899988753
Q ss_pred HHhhcCCCCCCCCCCCcchhhhhhhhhccccccccccCcCEEEEeCccCC-CCCCC-CCCCeEEEEEcccchhchHHHHH
Q 042007 607 FEKVCEAPAPAKPNRGNLMRMETKSAANNANFEQIQASFPKILIKGPYGA-PAQDY-KNYDILLLIGLGIGATPFISIIK 684 (844)
Q Consensus 607 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IdGPyG~-~~~~~-~~~~~vvlVagGiGITp~lsil~ 684 (844)
++| .+|.|.||+|. +..+. ...+.+|||||||||||++|+++
T Consensus 83 -----------~~G-------------------------d~v~i~gp~~g~f~l~~~~~~~~~vlIagGtGItP~~s~l~ 126 (248)
T PRK10926 83 -----------KPG-------------------------DEVQVVSEAAGFFVLDEVPDCETLWMLATGTAIGPYLSILQ 126 (248)
T ss_pred -----------CCC-------------------------CEEEEecCCCcceEccCCCCCCeEEEEEeeeeHHHHHHHHH
Confidence 466 68999999854 33221 13468999999999999999999
Q ss_pred HHHHHhhhcCcchhhhcCCCCCCCcEEEEEEEeCCCChhhhHHHHHHHHhccCCCCeEEEEEEEecccCCCChhHHHHHH
Q 042007 685 DLLNHIKSHERDTEFLENGFKKGPERAYFYWVTREQGSFEWFKGVMDDIADHDDKNVIEMHNYLTSVYEEGDARSALIAM 764 (844)
Q Consensus 685 ~l~~~~~~~~~~~~~~~~~~~~~~~~v~l~W~~R~~~~~~wf~~~L~~l~~~~~~~~l~i~~ylT~~~~~~d~~~~~~~~ 764 (844)
++.... ..++++|+|++|+.+++ .|.++|+++++.. +.++.++..+++....+.
T Consensus 127 ~~~~~~----------------~~~~v~l~~g~r~~~d~-~~~~el~~l~~~~-~~~~~v~~~~s~~~~~~~-------- 180 (248)
T PRK10926 127 EGKDLE----------------RFKNLVLVHAARYAADL-SYLPLMQELEQRY-EGKLRIQTVVSRETAPGS-------- 180 (248)
T ss_pred hhHhhC----------------CCCcEEEEEeCCcHHHH-HHHHHHHHHHHhC-cCCEEEEEEECCCCCCCC--------
Confidence 875432 24679999999999887 7899999887642 235677766665321100
Q ss_pred HHHhhhhcCCccccccCcccccccCCCh---HHHHHHHHh-hCCCCcEEEEEeCChhHHHHHHHHHHh
Q 042007 765 VQKLQHAKNGVDIVSESRIKTHFARPNW---RKVFGQLAT-DHESSRIGVFYCGSATLTKTLKELCLE 828 (844)
Q Consensus 765 ~~~~~~~~~~~d~~sg~~~~~~~gRPd~---~~v~~~~~~-~~~~~~v~V~~CGP~~m~~~vr~~~~~ 828 (844)
..||.+- +..+.+... ........||+|||++|++++++.+.+
T Consensus 181 ---------------------~~G~v~~~i~~~~l~~~~~~~~~~~~~~vy~CGp~~Mv~~~~~~l~~ 227 (248)
T PRK10926 181 ---------------------LTGRVPALIESGELEAAVGLPMDAETSHVMLCGNPQMVRDTQQLLKE 227 (248)
T ss_pred ---------------------cCCccchhhhcchHHHHhcCCCCccCCEEEEECCHHHHHHHHHHHHH
Confidence 0133321 001111111 111123579999999999999999876
No 36
>cd06183 cyt_b5_reduct_like Cytochrome b5 reductase catalyzes the reduction of 2 molecules of cytochrome b5 using NADH as an electron donor. Like ferredoxin reductases, these proteins have an N-terminal FAD binding subdomain and a C-terminal NADH binding subdomain, separated by a cleft, which accepts FAD. The NADH-binding moiety interacts with part of the FAD and resembles a Rossmann fold. However, NAD is bound differently than in canonical Rossmann fold proteins. Nitrate reductases, flavoproteins similar to pyridine nucleotide cytochrome reductases, catalyze the reduction of nitrate to nitrite. The enzyme can be divided into three functional fragments that bind the cofactors molybdopterin, heme-iron, and FAD/NADH.
Probab=99.93 E-value=1.5e-24 Score=227.88 Aligned_cols=217 Identities=18% Similarity=0.291 Sum_probs=162.7
Q ss_pred EEEEEEEecCCEEEEEEeCCC---CCccCCCcEEEEEcCCCCCCCccCcccccCCCC-CceEEEEEec--CCchHHHHHH
Q 042007 533 EVIKAVIYTGNVLALYMTKPP---GFKYQSGMYLFVKCPDLSPFEWHPFSITSAPGD-YYLSVHIRTL--GDWTTELKQR 606 (844)
Q Consensus 533 ~i~~v~~~~~~v~~l~i~~p~---~~~~~pGQyv~l~~p~~s~~e~HPFTI~s~p~~-~~l~l~Ir~~--G~~T~~L~~~ 606 (844)
+|.+++.+++++.++++..|. .+.|+||||+.|.+|..+....|||||+|.|.+ +.++|+||.. |..|+.|.+.
T Consensus 2 ~v~~~~~~~~~~~~~~l~~~~~~~~~~~~pGq~v~l~~~~~~~~~~R~ysi~s~~~~~~~~~~~v~~~~~G~~s~~l~~~ 81 (234)
T cd06183 2 KLVSKEDISHDTRIFRFELPSPDQVLGLPVGQHVELKAPDDGEQVVRPYTPISPDDDKGYFDLLIKIYPGGKMSQYLHSL 81 (234)
T ss_pred EeEEeEecCCCEEEEEEECCCCCCcCCCCcccEEEEEecCCCcccccccccccCCCcCCEEEEEEEECCCCcchhHHhcC
Confidence 467788889999999998875 378999999999999766678999999998864 5799999986 7788888653
Q ss_pred HHhhcCCCCCCCCCCCcchhhhhhhhhccccccccccCcCEEEEeCccCCCCCCCCCC-CeEEEEEcccchhchHHHHHH
Q 042007 607 FEKVCEAPAPAKPNRGNLMRMETKSAANNANFEQIQASFPKILIKGPYGAPAQDYKNY-DILLLIGLGIGATPFISIIKD 685 (844)
Q Consensus 607 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IdGPyG~~~~~~~~~-~~vvlVagGiGITp~lsil~~ 685 (844)
++| .++.|.||||.+..+.... +++||||||+||||+++++++
T Consensus 82 -----------~~G-------------------------~~v~i~gP~G~~~~~~~~~~~~~vliagGtGiaP~~~~l~~ 125 (234)
T cd06183 82 -----------KPG-------------------------DTVEIRGPFGKFEYKPNGKVKHIGMIAGGTGITPMLQLIRA 125 (234)
T ss_pred -----------CCC-------------------------CEEEEECCccceeecCCCCccEEEEEcCCcchhHHHHHHHH
Confidence 355 6799999999875433332 789999999999999999999
Q ss_pred HHHHhhhcCcchhhhcCCCCCCCcEEEEEEEeCCCChhhhHHHHHHHHhccCCCCeEEEEEEEecccCCCChhHHHHHHH
Q 042007 686 LLNHIKSHERDTEFLENGFKKGPERAYFYWVTREQGSFEWFKGVMDDIADHDDKNVIEMHNYLTSVYEEGDARSALIAMV 765 (844)
Q Consensus 686 l~~~~~~~~~~~~~~~~~~~~~~~~v~l~W~~R~~~~~~wf~~~L~~l~~~~~~~~l~i~~ylT~~~~~~d~~~~~~~~~ 765 (844)
++.... ..++|+|+|++|+.+++ +|.++|+++.+.. ..+++++.++|+.....
T Consensus 126 ~~~~~~---------------~~~~i~l~~~~r~~~~~-~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~---------- 178 (234)
T cd06183 126 ILKDPE---------------DKTKISLLYANRTEEDI-LLREELDELAKKH-PDRFKVHYVLSRPPEGW---------- 178 (234)
T ss_pred HHhCcC---------------cCcEEEEEEecCCHHHh-hhHHHHHHHHHhC-cccEEEEEEEcCCCcCC----------
Confidence 875420 24789999999999987 8999999887642 24677777776432110
Q ss_pred HHhhhhcCCccccccCcccccccCCChHHHHHHHHhhCCCCcEEEEEeCChhHHH-HHHHHHHhhcC
Q 042007 766 QKLQHAKNGVDIVSESRIKTHFARPNWRKVFGQLATDHESSRIGVFYCGSATLTK-TLKELCLEFSL 831 (844)
Q Consensus 766 ~~~~~~~~~~d~~sg~~~~~~~gRPd~~~v~~~~~~~~~~~~v~V~~CGP~~m~~-~vr~~~~~~~~ 831 (844)
..+.||.+. .+++......+.....||+|||++|++ ++++.+.+.+.
T Consensus 179 ------------------~~~~g~~~~-~~l~~~~~~~~~~~~~~~icGp~~~~~~~~~~~l~~~G~ 226 (234)
T cd06183 179 ------------------KGGVGFITK-EMIKEHLPPPPSEDTLVLVCGPPPMIEGAVKGLLKELGY 226 (234)
T ss_pred ------------------ccccceECH-HHHHHhCCCCCCCCeEEEEECCHHHHHHHHHHHHHHcCC
Confidence 011255552 233333221012356899999999999 99999987653
No 37
>cd06218 DHOD_e_trans FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=99.93 E-value=1.6e-24 Score=229.32 Aligned_cols=209 Identities=18% Similarity=0.309 Sum_probs=155.2
Q ss_pred EEEEEecCCEEEEEEeCCC-CCccCCCcEEEEEcCC-CCCCCccCcccccCC-CCCceEEEEEecCCchHHHHHHHHhhc
Q 042007 535 IKAVIYTGNVLALYMTKPP-GFKYQSGMYLFVKCPD-LSPFEWHPFSITSAP-GDYYLSVHIRTLGDWTTELKQRFEKVC 611 (844)
Q Consensus 535 ~~v~~~~~~v~~l~i~~p~-~~~~~pGQyv~l~~p~-~s~~e~HPFTI~s~p-~~~~l~l~Ir~~G~~T~~L~~~~~~~~ 611 (844)
.+++.+++++.+|+++.|. .+.|+||||+.|.+|. .+.+.+|||||+|.| +++.++|+||..|++|+.|.++
T Consensus 2 ~~~~~~t~~v~~l~l~~~~~~~~~~pGQ~v~l~~~~~~~~~~~R~ySi~s~~~~~~~l~l~v~~~G~~s~~l~~l----- 76 (246)
T cd06218 2 LSNREIADDIYRLVLEAPEIAAAAKPGQFVMLRVPDGSDPLLRRPISIHDVDPEEGTITLLYKVVGKGTRLLSEL----- 76 (246)
T ss_pred cceeEecCCeEEEEEeCcchhccCCCCcEEEEEeCCCCCCcCCCceEeeeccCCCCEEEEEEEEECcchHHHhcC-----
Confidence 4677889999999999887 6789999999999986 345789999999988 4788999999999999877543
Q ss_pred CCCCCCCCCCCcchhhhhhhhhccccccccccCcCEEEEeCccCCCCCCCCCCCeEEEEEcccchhchHHHHHHHHHHhh
Q 042007 612 EAPAPAKPNRGNLMRMETKSAANNANFEQIQASFPKILIKGPYGAPAQDYKNYDILLLIGLGIGATPFISIIKDLLNHIK 691 (844)
Q Consensus 612 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IdGPyG~~~~~~~~~~~vvlVagGiGITp~lsil~~l~~~~~ 691 (844)
++| .+|.|.||||........++.+||||||+||||++|+++++...
T Consensus 77 ------~~G-------------------------d~v~i~gP~G~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~-- 123 (246)
T cd06218 77 ------KAG-------------------------DELDVLGPLGNGFDLPDDDGKVLLVGGGIGIAPLLFLAKQLAER-- 123 (246)
T ss_pred ------CCC-------------------------CEEEEEecCCCCcCCCCCCCcEEEEecccCHHHHHHHHHHHHhc--
Confidence 355 68999999997433223578999999999999999999988652
Q ss_pred hcCcchhhhcCCCCCCCcEEEEEEEeCCCChhhhHHHHHHHHhccCCCCeEEEEEEEecccCCCChhHHHHHHHHHhhhh
Q 042007 692 SHERDTEFLENGFKKGPERAYFYWVTREQGSFEWFKGVMDDIADHDDKNVIEMHNYLTSVYEEGDARSALIAMVQKLQHA 771 (844)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~v~l~W~~R~~~~~~wf~~~L~~l~~~~~~~~l~i~~ylT~~~~~~d~~~~~~~~~~~~~~~ 771 (844)
..+++|+|++|+.+++ .|.++|+++.. . + +++... ...
T Consensus 124 ----------------~~~v~l~~~~r~~~d~-~~~~eL~~l~~-----~--~--~~~~~~--~~~-------------- 161 (246)
T cd06218 124 ----------------GIKVTVLLGFRSADDL-FLVEEFEALGA-----E--V--YVATDD--GSA-------------- 161 (246)
T ss_pred ----------------CCceEEEEEccchhhh-hhHHHHHhhCC-----c--E--EEEcCC--CCC--------------
Confidence 2579999999999986 77788877632 1 2 222111 000
Q ss_pred cCCccccccCcccccccCCChHHHHHHHHhhCCCCcEEEEEeCChhHHHHHHHHHHhhcCCCCceEEEEecCC
Q 042007 772 KNGVDIVSESRIKTHFARPNWRKVFGQLATDHESSRIGVFYCGSATLTKTLKELCLEFSLESPTRFDFHKENF 844 (844)
Q Consensus 772 ~~~~d~~sg~~~~~~~gRPd~~~v~~~~~~~~~~~~v~V~~CGP~~m~~~vr~~~~~~~~~~~~~~~~h~E~F 844 (844)
+ .+..+.+.+.+..... ....||+|||++|++++++.+.+.+ ....++.|++
T Consensus 162 --------~-------~~g~v~~~l~~~~~~~--~~~~vyiCGp~~mv~~~~~~L~~~G----v~~~~~~~~~ 213 (246)
T cd06218 162 --------G-------TKGFVTDLLKELLAEA--RPDVVYACGPEPMLKAVAELAAERG----VPCQVSLEER 213 (246)
T ss_pred --------C-------cceehHHHHHHHhhcc--CCCEEEEECCHHHHHHHHHHHHhcC----CCEEEEeccc
Confidence 0 0112334444443321 2358999999999999999998754 3466776654
No 38
>PRK08345 cytochrome-c3 hydrogenase subunit gamma; Provisional
Probab=99.93 E-value=2.6e-24 Score=232.88 Aligned_cols=225 Identities=17% Similarity=0.221 Sum_probs=156.3
Q ss_pred cccEEEEEEEEecCCE--EEEEEeCC---CCCccCCCcEEEEEcCCCCCCCccCcccccCCC-CCceEEEEEecCCchHH
Q 042007 529 NHKVEVIKAVIYTGNV--LALYMTKP---PGFKYQSGMYLFVKCPDLSPFEWHPFSITSAPG-DYYLSVHIRTLGDWTTE 602 (844)
Q Consensus 529 ~~~~~i~~v~~~~~~v--~~l~i~~p---~~~~~~pGQyv~l~~p~~s~~e~HPFTI~s~p~-~~~l~l~Ir~~G~~T~~ 602 (844)
++.++|++++.+++++ +.|++..| ..+.|+||||+.|++|.. ..|||||+|+|. ++.++|+||..|.+|+.
T Consensus 5 ~~~~~V~~~~~~t~d~~~~~l~~~~~~~~~~~~~~pGQ~v~l~~~~~---~~~pySias~p~~~~~l~l~Ik~~G~~S~~ 81 (289)
T PRK08345 5 LHDAKILEVYDLTEREKLFLLRFEDPELAESFTFKPGQFVQVTIPGV---GEVPISICSSPTRKGFFELCIRRAGRVTTV 81 (289)
T ss_pred ceeEEEEEEEecCCCCCEEEEEEeCccccCCCCcCCCCEEEEEcCCC---CceeeEecCCCCCCCEEEEEEEeCChHHHH
Confidence 3568899999998884 45555444 247899999999999864 348999999986 46899999999999998
Q ss_pred HHHHHHhhcCCCCCCCCCCCcchhhhhhhhhccccccccccCcCEEEEeCccCCCC-CCCCCCCeEEEEEcccchhchHH
Q 042007 603 LKQRFEKVCEAPAPAKPNRGNLMRMETKSAANNANFEQIQASFPKILIKGPYGAPA-QDYKNYDILLLIGLGIGATPFIS 681 (844)
Q Consensus 603 L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IdGPyG~~~-~~~~~~~~vvlVagGiGITp~ls 681 (844)
|.++ ++| .++.|+||||.+. .+....+++||||||+||||++|
T Consensus 82 L~~l-----------~~G-------------------------d~v~v~gP~G~~f~~~~~~~~~~llIAgGtGIaP~~s 125 (289)
T PRK08345 82 IHRL-----------KEG-------------------------DIVGVRGPYGNGFPVDEMEGMDLLLIAGGLGMAPLRS 125 (289)
T ss_pred HHhC-----------CCC-------------------------CEEEEeCCCCCCCCcccccCceEEEEecccchhHHHH
Confidence 8653 356 6799999999843 22223468999999999999999
Q ss_pred HHHHHHHHhhhcCcchhhhcCCCCCCCcEEEEEEEeCCCChhhhHHHHHHHHhccCCCCeEEEEEEEecccCCCChhHHH
Q 042007 682 IIKDLLNHIKSHERDTEFLENGFKKGPERAYFYWVTREQGSFEWFKGVMDDIADHDDKNVIEMHNYLTSVYEEGDARSAL 761 (844)
Q Consensus 682 il~~l~~~~~~~~~~~~~~~~~~~~~~~~v~l~W~~R~~~~~~wf~~~L~~l~~~~~~~~l~i~~ylT~~~~~~d~~~~~ 761 (844)
++++++.... ..++|+|+|++|+.+++ +|.++|.++++.. .+++++.++++..+ .+...
T Consensus 126 ~l~~~l~~~~---------------~~~~v~l~~~~r~~~d~-~~~deL~~l~~~~--~~~~~~~~~s~~~~-~~~~~-- 184 (289)
T PRK08345 126 VLLYAMDNRW---------------KYGNITLIYGAKYYEDL-LFYDELIKDLAEA--ENVKIIQSVTRDPE-WPGCH-- 184 (289)
T ss_pred HHHHHHhcCC---------------CCCcEEEEEecCCHHHh-hHHHHHHHHHhcC--CCEEEEEEecCCCC-CcCcc--
Confidence 9999875420 24689999999999998 7889998886542 46788877776321 11000
Q ss_pred HHHHHHhhhhcCCccccccCcccccccCCChHHHHHHHHhhCCCCcEEEEEeCChhHHHHHHHHHHhhcC
Q 042007 762 IAMVQKLQHAKNGVDIVSESRIKTHFARPNWRKVFGQLATDHESSRIGVFYCGSATLTKTLKELCLEFSL 831 (844)
Q Consensus 762 ~~~~~~~~~~~~~~d~~sg~~~~~~~gRPd~~~v~~~~~~~~~~~~v~V~~CGP~~m~~~vr~~~~~~~~ 831 (844)
....+..-....|+.+ +++.+.. ....+..||+|||++|++++++.+.+.+.
T Consensus 185 --------------~~~~~~~~~~~~g~v~--~~~~~~~--~~~~~~~vyiCGP~~m~~~v~~~L~~~Gv 236 (289)
T PRK08345 185 --------------GLPQGFIERVCKGVVT--DLFREAN--TDPKNTYAAICGPPVMYKFVFKELINRGY 236 (289)
T ss_pred --------------ccccccccccccCchh--hhhhhcC--CCccccEEEEECCHHHHHHHHHHHHHcCC
Confidence 0000000001112221 2222111 11124579999999999999999987653
No 39
>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed
Probab=99.93 E-value=2.6e-24 Score=228.37 Aligned_cols=149 Identities=20% Similarity=0.343 Sum_probs=126.0
Q ss_pred cccEEEEEEEEecCCEEEEEEeCCCCCccCCCcEEEEEcCCCCCCCccCcccccCCCCCceEEEEEecCCchHHHHHHHH
Q 042007 529 NHKVEVIKAVIYTGNVLALYMTKPPGFKYQSGMYLFVKCPDLSPFEWHPFSITSAPGDYYLSVHIRTLGDWTTELKQRFE 608 (844)
Q Consensus 529 ~~~~~i~~v~~~~~~v~~l~i~~p~~~~~~pGQyv~l~~p~~s~~e~HPFTI~s~p~~~~l~l~Ir~~G~~T~~L~~~~~ 608 (844)
+..++|++++.+++++.++++..|..+.|+||||+.|.+|....+.+|||||+|.| ++.+.|+||..|.+|+.|.++
T Consensus 4 ~~~~~V~~~~~~t~d~~~l~l~~~~~~~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~-~~~l~l~Vk~~G~~t~~l~~l-- 80 (250)
T PRK00054 4 PENMKIVENKEIAPNIYTLVLDGEKVFDMKPGQFVMVWVPGVEPLLERPISISDID-KNEITILYRKVGEGTKKLSKL-- 80 (250)
T ss_pred ceEEEEEEEEEecCCeEEEEEeCccccCCCCCcEEEEEeCCCCCcCceeeEEeeeC-CCEEEEEEEEcChHHHHHhcC--
Confidence 35678899999999999999998777889999999999997766789999999999 889999999999999988643
Q ss_pred hhcCCCCCCCCCCCcchhhhhhhhhccccccccccCcCEEEEeCccCCCCCCCCCCCeEEEEEcccchhchHHHHHHHHH
Q 042007 609 KVCEAPAPAKPNRGNLMRMETKSAANNANFEQIQASFPKILIKGPYGAPAQDYKNYDILLLIGLGIGATPFISIIKDLLN 688 (844)
Q Consensus 609 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IdGPyG~~~~~~~~~~~vvlVagGiGITp~lsil~~l~~ 688 (844)
++| .++.|.||||.+...-...+++||||||+||||++|+++++..
T Consensus 81 ---------~~G-------------------------~~v~i~gP~G~~f~l~~~~~~~vlIagG~GiaP~~s~l~~~~~ 126 (250)
T PRK00054 81 ---------KEG-------------------------DELDIRGPLGNGFDLEEIGGKVLLVGGGIGVAPLYELAKELKK 126 (250)
T ss_pred ---------CCC-------------------------CEEEEEcccCCCCCCCCCCCeEEEEeccccHHHHHHHHHHHHH
Confidence 356 6899999999743222366899999999999999999999864
Q ss_pred HhhhcCcchhhhcCCCCCCCcEEEEEEEeCCCChhhhHHHHHHHH
Q 042007 689 HIKSHERDTEFLENGFKKGPERAYFYWVTREQGSFEWFKGVMDDI 733 (844)
Q Consensus 689 ~~~~~~~~~~~~~~~~~~~~~~v~l~W~~R~~~~~~wf~~~L~~l 733 (844)
. ..+++++|.+|+.+++ +|.++|.++
T Consensus 127 ~------------------~~~v~l~~~~r~~~d~-~~~~el~~~ 152 (250)
T PRK00054 127 K------------------GVEVTTVLGARTKDEV-IFEEEFAKV 152 (250)
T ss_pred c------------------CCcEEEEEEcCCHHHh-hhHHHHHhc
Confidence 3 2469999999999997 677777763
No 40
>PRK05713 hypothetical protein; Provisional
Probab=99.92 E-value=2.9e-24 Score=235.30 Aligned_cols=212 Identities=18% Similarity=0.275 Sum_probs=157.4
Q ss_pred ccEEEEEEEEecCCEEEEEEeCCCCCccCCCcEEEEEcCCCCCCCccCcccccCCC-CCceEEEEEe--cCCchHHHHHH
Q 042007 530 HKVEVIKAVIYTGNVLALYMTKPPGFKYQSGMYLFVKCPDLSPFEWHPFSITSAPG-DYYLSVHIRT--LGDWTTELKQR 606 (844)
Q Consensus 530 ~~~~i~~v~~~~~~v~~l~i~~p~~~~~~pGQyv~l~~p~~s~~e~HPFTI~s~p~-~~~l~l~Ir~--~G~~T~~L~~~ 606 (844)
.+++|++++.+++++.+++++.+..+.|+||||+.|.++. -.+|||||+|.|+ ++.++|+||. .|.+|..|.++
T Consensus 92 ~~~~V~~~~~~t~dv~~l~l~~~~~~~~~~GQfv~l~~~~---~~~R~ySias~p~~~~~l~~~I~~~~~G~~s~~l~~l 168 (312)
T PRK05713 92 LPARVVALDWLGGDVLRLRLEPERPLRYRAGQHLVLWTAG---GVARPYSLASLPGEDPFLEFHIDCSRPGAFCDAARQL 168 (312)
T ss_pred CCeEEEEEecCCCCEEEEEEccCCcCCcCCCCEEEEecCC---CcccccccCcCCCCCCeEEEEEEEcCCCccchhhhcC
Confidence 4688999999999999999987778899999999999864 2689999999996 4789999985 47789877432
Q ss_pred HHhhcCCCCCCCCCCCcchhhhhhhhhccccccccccCcCEEEEeCccCCCC-CCCC-CCCeEEEEEcccchhchHHHHH
Q 042007 607 FEKVCEAPAPAKPNRGNLMRMETKSAANNANFEQIQASFPKILIKGPYGAPA-QDYK-NYDILLLIGLGIGATPFISIIK 684 (844)
Q Consensus 607 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IdGPyG~~~-~~~~-~~~~vvlVagGiGITp~lsil~ 684 (844)
++| .+|.|.||+|... .+.. ..+++||||||+||||++|+++
T Consensus 169 -----------~~G-------------------------d~v~l~~p~gg~~~~~~~~~~~~~vlIAgGtGiaP~~s~l~ 212 (312)
T PRK05713 169 -----------QVG-------------------------DLLRLGELRGGALHYDPDWQERPLWLLAAGTGLAPLWGILR 212 (312)
T ss_pred -----------CCC-------------------------CEEEEccCCCCceEecCCCCCCcEEEEecCcChhHHHHHHH
Confidence 456 6789999998532 1211 3468999999999999999999
Q ss_pred HHHHHhhhcCcchhhhcCCCCCCCcEEEEEEEeCCCChhhhHHHHHHHHhccCCCCeEEEEEEEecccCCCChhHHHHHH
Q 042007 685 DLLNHIKSHERDTEFLENGFKKGPERAYFYWVTREQGSFEWFKGVMDDIADHDDKNVIEMHNYLTSVYEEGDARSALIAM 764 (844)
Q Consensus 685 ~l~~~~~~~~~~~~~~~~~~~~~~~~v~l~W~~R~~~~~~wf~~~L~~l~~~~~~~~l~i~~ylT~~~~~~d~~~~~~~~ 764 (844)
+++... ..++++|+|++|+.+++ +|.++|+++++.. .+++++..++. ..
T Consensus 213 ~~~~~~----------------~~~~v~l~~g~r~~~d~-~~~~el~~l~~~~--~~~~~~~~~~~-----~~------- 261 (312)
T PRK05713 213 EALRQG----------------HQGPIRLLHLARDSAGH-YLAEPLAALAGRH--PQLSVELVTAA-----QL------- 261 (312)
T ss_pred HHHhcC----------------CCCcEEEEEEcCchHHh-hhHHHHHHHHHHC--CCcEEEEEECc-----ch-------
Confidence 987642 24679999999999998 7899999887643 24565543321 00
Q ss_pred HHHhhhhcCCccccccCcccccccCCChHHHHHHHHhhCCCCcEEEEEeCChhHHHHHHHHHHhhcCCCCceEEEEecCC
Q 042007 765 VQKLQHAKNGVDIVSESRIKTHFARPNWRKVFGQLATDHESSRIGVFYCGSATLTKTLKELCLEFSLESPTRFDFHKENF 844 (844)
Q Consensus 765 ~~~~~~~~~~~d~~sg~~~~~~~gRPd~~~v~~~~~~~~~~~~v~V~~CGP~~m~~~vr~~~~~~~~~~~~~~~~h~E~F 844 (844)
.+++.++.. . .....||+|||++|++++++.+.+.+- ..-.+|.|.|
T Consensus 262 ----------------------------~~~l~~~~~-~-~~~~~vyiCGp~~mv~~~~~~L~~~Gv---~~~~i~~e~F 308 (312)
T PRK05713 262 ----------------------------PAALAELRL-V-SRQTMALLCGSPASVERFARRLYLAGL---PRNQLLADVF 308 (312)
T ss_pred ----------------------------hhhhhhccC-C-CCCeEEEEeCCHHHHHHHHHHHHHcCC---CHHHeeeccc
Confidence 011111100 0 123579999999999999999877543 3445677776
No 41
>COG1018 Hmp Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 [Energy production and conversion]
Probab=99.92 E-value=1.1e-23 Score=223.03 Aligned_cols=221 Identities=20% Similarity=0.324 Sum_probs=172.4
Q ss_pred cccEEEEEEEEecCCEEEEEEeCCCCCc--cCCCcEEEEEcCCCCCCCccCcccccCCCCC-ceEEEEEec--CCchHHH
Q 042007 529 NHKVEVIKAVIYTGNVLALYMTKPPGFK--YQSGMYLFVKCPDLSPFEWHPFSITSAPGDY-YLSVHIRTL--GDWTTEL 603 (844)
Q Consensus 529 ~~~~~i~~v~~~~~~v~~l~i~~p~~~~--~~pGQyv~l~~p~~s~~e~HPFTI~s~p~~~-~l~l~Ir~~--G~~T~~L 603 (844)
+..++|.+++..+++++++++..|.+.. |+||||+.|.++..+...++.|||+|+|.++ .+.+.||+. |..|+.|
T Consensus 5 ~~~~~V~~v~~~t~di~sf~l~~~~g~~~~f~pGQ~i~v~l~~~~~~~~R~YSl~s~p~~~~~~~isVk~~~~G~~S~~L 84 (266)
T COG1018 5 FRRVTVTSVEPETDDVFSFTLEPPDGLRLDFEPGQYITVGLPNGGEPLLRAYSLSSAPDEDSLYRISVKREDGGGGSNWL 84 (266)
T ss_pred eEEEEEEEEEEecCceEEEEEEcCCCCccccCCCCeEEEEecCCCceeeEEEEeccCCCCCceEEEEEEEeCCCcccHHH
Confidence 4678899999999999999999998875 9999999999998777899999999999876 889999988 7899999
Q ss_pred HHHHHhhcCCCCCCCCCCCcchhhhhhhhhccccccccccCcCEEEEeCccCCCCCCCCCCCeEEEEEcccchhchHHHH
Q 042007 604 KQRFEKVCEAPAPAKPNRGNLMRMETKSAANNANFEQIQASFPKILIKGPYGAPAQDYKNYDILLLIGLGIGATPFISII 683 (844)
Q Consensus 604 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IdGPyG~~~~~~~~~~~vvlVagGiGITp~lsil 683 (844)
++.+ ++| ++|.|.+|.|.+..+...-++++|+||||||||++||+
T Consensus 85 h~~l----------k~G-------------------------d~l~v~~P~G~F~l~~~~~~~~llla~G~GITP~lSml 129 (266)
T COG1018 85 HDHL----------KVG-------------------------DTLEVSAPAGDFVLDDLPERKLLLLAGGIGITPFLSML 129 (266)
T ss_pred HhcC----------CCC-------------------------CEEEEecCCCCccCCCCCCCcEEEEeccccHhHHHHHH
Confidence 9765 467 78999999999976654555899999999999999999
Q ss_pred HHHHHHhhhcCcchhhhcCCCCCCCcEEEEEEEeCCCChhhhHHHHHHHHhccCCCCeEEEEEEEecccCCCChhHHHHH
Q 042007 684 KDLLNHIKSHERDTEFLENGFKKGPERAYFYWVTREQGSFEWFKGVMDDIADHDDKNVIEMHNYLTSVYEEGDARSALIA 763 (844)
Q Consensus 684 ~~l~~~~~~~~~~~~~~~~~~~~~~~~v~l~W~~R~~~~~~wf~~~L~~l~~~~~~~~l~i~~ylT~~~~~~d~~~~~~~ 763 (844)
+++.... . .+|.|++++|+.+++ .|+++ ++++... .+...++.|.... +
T Consensus 130 ~~~~~~~----------------~-~~v~l~h~~R~~~~~-af~de-~~l~~~~-~~~~~~~~~~~~~----~------- 178 (266)
T COG1018 130 RTLLDRG----------------P-ADVVLVHAARTPADL-AFRDE-LELAAEL-PNALLLGLYTERG----K------- 178 (266)
T ss_pred HHHHHhC----------------C-CCEEEEEecCChhhc-chhhH-HHHHhhC-CCCeeEEEEEecC----C-------
Confidence 9987763 4 779999999999998 67777 6665443 2234454444200 0
Q ss_pred HHHHhhhhcCCccccccCcccccccCCChHHHHHHHHhhCCCCcEEEEEeCChhHHHHHHHHHHhhcCCCCceEEEEecC
Q 042007 764 MVQKLQHAKNGVDIVSESRIKTHFARPNWRKVFGQLATDHESSRIGVFYCGSATLTKTLKELCLEFSLESPTRFDFHKEN 843 (844)
Q Consensus 764 ~~~~~~~~~~~~d~~sg~~~~~~~gRPd~~~v~~~~~~~~~~~~v~V~~CGP~~m~~~vr~~~~~~~~~~~~~~~~h~E~ 843 (844)
.-||++...+... .+.....+|+|||.+|+++++..+.+.+.. .-.+|.|.
T Consensus 179 ----------------------~~g~~~~~~l~~~----~~~~~r~~y~CGp~~fm~av~~~l~~~g~~---~~~vh~E~ 229 (266)
T COG1018 179 ----------------------LQGRIDVSRLLSA----APDGGREVYLCGPGPFMQAVRLALEALGVP---DDRVHLEG 229 (266)
T ss_pred ----------------------ccccccHHHHhcc----CCCCCCEEEEECCHHHHHHHHHHHHHcCCC---hhcEEEee
Confidence 0156665443221 111115899999999999999999887543 44678887
Q ss_pred C
Q 042007 844 F 844 (844)
Q Consensus 844 F 844 (844)
|
T Consensus 230 F 230 (266)
T COG1018 230 F 230 (266)
T ss_pred c
Confidence 6
No 42
>cd06185 PDR_like Phthalate dioxygenase reductase (PDR) is an FMN-dependent reductase that mediates electron transfer from NADH to FMN to an iron sulfur cluster. PDR has an an N-terminal ferrredoxin reductase (FNR)-like NAD(H) binding domain and a C-terminal iron-sulfur [2Fe-2S] cluster domain. Although structurally homologous to FNR, PDR binds FMN rather than FAD in it's FNR-like domain. Electron transfer between pyrimidines and iron-sulfur clusters (Rieske center [2Fe-2S]) or heme groups is mediated by flavins in respiration, photosynthesis, and oxygenase systems. Type I dioxygenase systems, including the hydroxylate phthalate system, have 2 components, a monomeric reductase consisting of a flavin and a 2Fe-2S center and a multimeric oxygenase. In contrast to other Rieske dioxygenases the ferredoxin like domain is C-, not N-terminal.
Probab=99.92 E-value=6.7e-24 Score=219.45 Aligned_cols=202 Identities=15% Similarity=0.232 Sum_probs=152.3
Q ss_pred EEEEecCCEEEEEEeCCCCC---ccCCCcEEEEEcCCCCCCCccCcccccCCCC-CceEEEEEecCC---chHHHHHHHH
Q 042007 536 KAVIYTGNVLALYMTKPPGF---KYQSGMYLFVKCPDLSPFEWHPFSITSAPGD-YYLSVHIRTLGD---WTTELKQRFE 608 (844)
Q Consensus 536 ~v~~~~~~v~~l~i~~p~~~---~~~pGQyv~l~~p~~s~~e~HPFTI~s~p~~-~~l~l~Ir~~G~---~T~~L~~~~~ 608 (844)
+++.+++++++++++.|... .|+||||+.|++|. ..+|||||+|.|.+ +.+.|+||..++ .|..|.+.+
T Consensus 2 ~~~~~~~~~~~~~l~~~~~~~~~~~~pGQ~~~l~~~~---~~~r~ySi~s~~~~~~~l~~~v~~~~~g~~~s~~l~~~~- 77 (211)
T cd06185 2 RIRDEAPDIRSFELEAPDGAPLPAFEPGAHIDVHLPN---GLVRQYSLCGDPADRDRYRIAVLREPASRGGSRYMHELL- 77 (211)
T ss_pred ceEEcCCCeEEEEEEeCCCCcCCCCCCCceEEEEcCC---CCceeeeccCCCCCCCEEEEEEEeccCCCchHHHHHhcC-
Confidence 45678899999999987753 89999999999987 36899999999875 889999998752 677776543
Q ss_pred hhcCCCCCCCCCCCcchhhhhhhhhccccccccccCcCEEEEeCccCCCCCCCCCCCeEEEEEcccchhchHHHHHHHHH
Q 042007 609 KVCEAPAPAKPNRGNLMRMETKSAANNANFEQIQASFPKILIKGPYGAPAQDYKNYDILLLIGLGIGATPFISIIKDLLN 688 (844)
Q Consensus 609 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IdGPyG~~~~~~~~~~~vvlVagGiGITp~lsil~~l~~ 688 (844)
++| .++.|.||||.+... ...+++||||||+||||++|+++++..
T Consensus 78 ---------~~G-------------------------d~v~i~gP~g~f~~~-~~~~~~v~ia~GtGiap~~~il~~~~~ 122 (211)
T cd06185 78 ---------RVG-------------------------DELEVSAPRNLFPLD-EAARRHLLIAGGIGITPILSMARALAA 122 (211)
T ss_pred ---------CCC-------------------------CEEEEcCCccCCcCC-CCCCcEEEEeccchHhHHHHHHHHHHh
Confidence 345 679999999987543 245789999999999999999998864
Q ss_pred HhhhcCcchhhhcCCCCCCCcEEEEEEEeCCCChhhhHHHHHHHHhccCCCCeEEEEEEEecccCCCChhHHHHHHHHHh
Q 042007 689 HIKSHERDTEFLENGFKKGPERAYFYWVTREQGSFEWFKGVMDDIADHDDKNVIEMHNYLTSVYEEGDARSALIAMVQKL 768 (844)
Q Consensus 689 ~~~~~~~~~~~~~~~~~~~~~~v~l~W~~R~~~~~~wf~~~L~~l~~~~~~~~l~i~~ylT~~~~~~d~~~~~~~~~~~~ 768 (844)
. .++++++|++|+.+++ .+.++|+++. ...+ +++.+..
T Consensus 123 ~------------------~~~v~l~~~~r~~~~~-~~~~~l~~~~----~~~~--~~~~~~~----------------- 160 (211)
T cd06185 123 R------------------GADFELHYAGRSREDA-AFLDELAALP----GDRV--HLHFDDE----------------- 160 (211)
T ss_pred C------------------CCCEEEEEEeCCCcch-hHHHHHhhhc----CCcE--EEEECCC-----------------
Confidence 2 2569999999999987 5677777665 1233 3333221
Q ss_pred hhhcCCccccccCcccccccCCChHHHHHHHHhhCCCCcEEEEEeCChhHHHHHHHHHHhhcCCCCceEEEEecCC
Q 042007 769 QHAKNGVDIVSESRIKTHFARPNWRKVFGQLATDHESSRIGVFYCGSATLTKTLKELCLEFSLESPTRFDFHKENF 844 (844)
Q Consensus 769 ~~~~~~~d~~sg~~~~~~~gRPd~~~v~~~~~~~~~~~~v~V~~CGP~~m~~~vr~~~~~~~~~~~~~~~~h~E~F 844 (844)
.+|++..+++.+. . ....||+|||+.|++++++.+.+.+. ..-.+|.|.|
T Consensus 161 ------------------~~~~~~~~~~~~~----~-~~~~vyicGp~~m~~~~~~~l~~~gv---~~~~i~~e~F 210 (211)
T cd06185 161 ------------------GGRLDLAALLAAP----P-AGTHVYVCGPEGMMDAVRAAAAALGW---PEARLHFERF 210 (211)
T ss_pred ------------------CCccCHHHHhccC----C-CCCEEEEECCHHHHHHHHHHHHHcCC---ChhheEeeec
Confidence 0355655555432 1 13479999999999999999988643 3446777877
No 43
>cd06220 DHOD_e_trans_like2 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=99.92 E-value=9.1e-24 Score=221.86 Aligned_cols=200 Identities=20% Similarity=0.306 Sum_probs=150.0
Q ss_pred EEEEEEEEecCCEEEEEEeCCCCCccCCCcEEEEEcCCCCCCCccCcccccCCCCCceEEEEEecCCchHHHHHHHHhhc
Q 042007 532 VEVIKAVIYTGNVLALYMTKPPGFKYQSGMYLFVKCPDLSPFEWHPFSITSAPGDYYLSVHIRTLGDWTTELKQRFEKVC 611 (844)
Q Consensus 532 ~~i~~v~~~~~~v~~l~i~~p~~~~~~pGQyv~l~~p~~s~~e~HPFTI~s~p~~~~l~l~Ir~~G~~T~~L~~~~~~~~ 611 (844)
++|++++.+++++.+++++.| +.|+||||+.|.+|.. ..|||||+|.| +.++|+||..|.+|+.|.++
T Consensus 1 ~~v~~~~~~t~~~~~~~l~~~--~~~~pGQ~v~l~~~~~---~~~~~Si~s~~--~~l~~~v~~~G~~s~~L~~l----- 68 (233)
T cd06220 1 VTIKEVIDETPTVKTFVFDWD--FDFKPGQFVMVWVPGV---DEIPMSLSYID--GPNSITVKKVGEATSALHDL----- 68 (233)
T ss_pred CEEEEEEEEcCCEEEEEEecC--CCCCCCceEEEEeCCC---CcceeEEecCC--CeEEEEEEecChHHHHHHhc-----
Confidence 467889999999999999875 5899999999999864 46999999999 78999999999999999863
Q ss_pred CCCCCCCCCCCcchhhhhhhhhccccccccccCcCEEEEeCccCCCCCCCCCCCeEEEEEcccchhchHHHHHHHHHHhh
Q 042007 612 EAPAPAKPNRGNLMRMETKSAANNANFEQIQASFPKILIKGPYGAPAQDYKNYDILLLIGLGIGATPFISIIKDLLNHIK 691 (844)
Q Consensus 612 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IdGPyG~~~~~~~~~~~vvlVagGiGITp~lsil~~l~~~~~ 691 (844)
++| .++.|.||||.+.. .. ++++||||||+||||++|+++++...
T Consensus 69 ------~~G-------------------------d~v~i~gP~G~~f~-~~-~~~~vliAgGtGitP~~sil~~~~~~-- 113 (233)
T cd06220 69 ------KEG-------------------------DKLGIRGPYGNGFE-LV-GGKVLLIGGGIGIAPLAPLAERLKKA-- 113 (233)
T ss_pred ------CCC-------------------------CEEEEECcCCCCcc-CC-CCeEEEEecCcChHHHHHHHHHHHhc--
Confidence 456 67999999998432 22 68999999999999999999988642
Q ss_pred hcCcchhhhcCCCCCCCcEEEEEEEeCCCChhhhHHHHHHHHhccCCCCeEEEEEEEecccCCCChhHHHHHHHHHhhhh
Q 042007 692 SHERDTEFLENGFKKGPERAYFYWVTREQGSFEWFKGVMDDIADHDDKNVIEMHNYLTSVYEEGDARSALIAMVQKLQHA 771 (844)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~v~l~W~~R~~~~~~wf~~~L~~l~~~~~~~~l~i~~ylT~~~~~~d~~~~~~~~~~~~~~~ 771 (844)
++++|+|++|+.+++ .+.++|++. ..+ + +.+.. + ..
T Consensus 114 -----------------~~i~l~~~~r~~~d~-~~~~eL~~~------~~~--~-~~~~~-~--~~-------------- 149 (233)
T cd06220 114 -----------------ADVTVLLGARTKEEL-LFLDRLRKS------DEL--I-VTTDD-G--SY-------------- 149 (233)
T ss_pred -----------------CCEEEEEecCChHHC-hhHHHHhhC------CcE--E-EEEeC-C--CC--------------
Confidence 569999999999987 677777651 112 1 12211 0 00
Q ss_pred cCCccccccCcccccccCCChHHHHHHHHhhCCCCcEEEEEeCChhHHHHHHHHHHhhcCCCCceEEEEecCC
Q 042007 772 KNGVDIVSESRIKTHFARPNWRKVFGQLATDHESSRIGVFYCGSATLTKTLKELCLEFSLESPTRFDFHKENF 844 (844)
Q Consensus 772 ~~~~d~~sg~~~~~~~gRPd~~~v~~~~~~~~~~~~v~V~~CGP~~m~~~vr~~~~~~~~~~~~~~~~h~E~F 844 (844)
+ ..|+. .+++.+... .....||+|||++|++.+++.+.+.+. ...+|.|.|
T Consensus 150 --------~-----~~g~~--~~~l~~~~~---~~~~~vyicGp~~m~~~~~~~L~~~g~----~~~i~~e~f 200 (233)
T cd06220 150 --------G-----FKGFV--TDLLKELDL---EEYDAIYVCGPEIMMYKVLEILDERGV----RAQFSLERY 200 (233)
T ss_pred --------c-----cccee--hHHHhhhcc---cCCCEEEEECCHHHHHHHHHHHHhcCC----cEEEEeccc
Confidence 0 00232 234433331 112379999999999999999977543 578888876
No 44
>cd06192 DHOD_e_trans_like FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (formi
Probab=99.92 E-value=1.1e-23 Score=222.79 Aligned_cols=144 Identities=19% Similarity=0.306 Sum_probs=120.1
Q ss_pred EEEEEecCCEEEEEEeCCC-CCccCCCcEEEEEcCCCCCCCccCcccccCC-CCCceEEEEEecCCchHHHHHHHHhhcC
Q 042007 535 IKAVIYTGNVLALYMTKPP-GFKYQSGMYLFVKCPDLSPFEWHPFSITSAP-GDYYLSVHIRTLGDWTTELKQRFEKVCE 612 (844)
Q Consensus 535 ~~v~~~~~~v~~l~i~~p~-~~~~~pGQyv~l~~p~~s~~e~HPFTI~s~p-~~~~l~l~Ir~~G~~T~~L~~~~~~~~~ 612 (844)
++++.+++++.+++++.|. .+.|+||||++|.+|......+|||||+|.| ++++++|+||..|.+|+.|.++
T Consensus 2 ~~~~~~t~~~~~l~l~~~~~~~~~~pGQ~v~l~~~~~~~~~~rpySi~s~~~~~~~l~l~i~~~G~~t~~l~~~------ 75 (243)
T cd06192 2 VKKEQLEPNLVLLTIKAPLAARLFRPGQFVFLRNFESPGLERIPLSLAGVDPEEGTISLLVEIRGPKTKLIAEL------ 75 (243)
T ss_pred ceEEEecCCEEEEEEEccchhhcCCCCCeEEEecCCCCCceeeeeEeeecCCCCCEEEEEEEEcCchHHHHHhC------
Confidence 4667789999999999775 4689999999999986445689999999997 4688999999999999988643
Q ss_pred CCCCCCCCCCcchhhhhhhhhccccccccccCcCEEEEeCccCCCCCCCCCCCeEEEEEcccchhchHHHHHHHHHHhhh
Q 042007 613 APAPAKPNRGNLMRMETKSAANNANFEQIQASFPKILIKGPYGAPAQDYKNYDILLLIGLGIGATPFISIIKDLLNHIKS 692 (844)
Q Consensus 613 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IdGPyG~~~~~~~~~~~vvlVagGiGITp~lsil~~l~~~~~~ 692 (844)
++| .++.|.||||.+.......+++||||||+||||++|+++++..+
T Consensus 76 -----~~G-------------------------~~l~i~gP~G~~~~~~~~~~~~lliagGtGiap~~~~l~~~~~~--- 122 (243)
T cd06192 76 -----KPG-------------------------EKLDVMGPLGNGFEGPKKGGTVLLVAGGIGLAPLLPIAKKLAAN--- 122 (243)
T ss_pred -----CCC-------------------------CEEEEEccCCCCCccCCCCCEEEEEeCcccHHHHHHHHHHHHHC---
Confidence 356 67999999998754333478999999999999999999998643
Q ss_pred cCcchhhhcCCCCCCCcEEEEEEEeCCCChhhhHHHHHHHH
Q 042007 693 HERDTEFLENGFKKGPERAYFYWVTREQGSFEWFKGVMDDI 733 (844)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~v~l~W~~R~~~~~~wf~~~L~~l 733 (844)
.++++++|++|+.+++ ++.++|.++
T Consensus 123 ---------------~~~v~l~~~~r~~~d~-~~~~el~~~ 147 (243)
T cd06192 123 ---------------GNKVTVLAGAKKAKEE-FLDEYFELP 147 (243)
T ss_pred ---------------CCeEEEEEecCcHHHH-HHHHHHHhh
Confidence 2579999999999986 777777665
No 45
>PF08030 NAD_binding_6: Ferric reductase NAD binding domain; InterPro: IPR013121 This entry contains ferric reductase NAD binding proteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.
Probab=99.92 E-value=7.1e-25 Score=215.60 Aligned_cols=153 Identities=25% Similarity=0.521 Sum_probs=97.3
Q ss_pred CCeEEEEEcccchhchHHHHHHHHHHhhhcCcchhhhcCCCCCCCcEEEEEEEeCCCChhhhHHHHHHHHhccCCCCeEE
Q 042007 664 YDILLLIGLGIGATPFISIIKDLLNHIKSHERDTEFLENGFKKGPERAYFYWVTREQGSFEWFKGVMDDIADHDDKNVIE 743 (844)
Q Consensus 664 ~~~vvlVagGiGITp~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~~v~l~W~~R~~~~~~wf~~~L~~l~~~~~~~~l~ 743 (844)
|++|||||||+||||++|+++++++..+... ...++|+|+|++|+.++++||.++|+++.+......++
T Consensus 1 y~~vvlvAGG~GIt~~l~~l~~l~~~~~~~~-----------~~~~~i~lvW~vR~~~~l~w~~~~l~~l~~~~~~~~~~ 69 (156)
T PF08030_consen 1 YDNVVLVAGGSGITPILPILRDLLQRQNRGS-----------SRTRRIKLVWVVRDADELEWFSPELNELLELDRLGNVE 69 (156)
T ss_dssp SSEEEEEEEGGGHHHHHHHHHHHHHHHHTT----------------EEEEEEEES-TTTTHHHHHHHHHHHHHHHHTSEE
T ss_pred CCEEEEEecCcCHHHHHHHHHHHHHhhcccc-----------ccccceEEEEeeCchhhhhhhhHHHHHHHHHhccccce
Confidence 7899999999999999999999998875322 35799999999999999999999998887665335899
Q ss_pred EEEEEecccCCCChhHHHHHHHHH--hhhhcCCccccccCc-ccccccCCChHHHHHHHHhhCCCCcEEEEEeCChhHHH
Q 042007 744 MHNYLTSVYEEGDARSALIAMVQK--LQHAKNGVDIVSESR-IKTHFARPNWRKVFGQLATDHESSRIGVFYCGSATLTK 820 (844)
Q Consensus 744 i~~ylT~~~~~~d~~~~~~~~~~~--~~~~~~~~d~~sg~~-~~~~~gRPd~~~v~~~~~~~~~~~~v~V~~CGP~~m~~ 820 (844)
+++|+|+....++........... .+....+.|..+..+ +.+++||||+++++++......+.+++|++|||++|++
T Consensus 70 ~~iyvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~s~~~~~~~~~gRP~~~~~~~~~~~~~~~~~~~V~~CGP~~m~~ 149 (156)
T PF08030_consen 70 VHIYVTRESSAPSNSDSSDSSSDGENSSSESSNVDSVSPTSNISVHYGRPDLDEILSEVASQQSSGRVAVFVCGPPSMVD 149 (156)
T ss_dssp EEEEETT-------------------------------------EEES---HHHHHHHHHHHSTT-EEEEEEES-HHHHH
T ss_pred EEEEEcCCcccccchhhhhcccccccccccccCCcccCCCcccceecCCCCHHHHHHHHHHhCCCCcEEEEEcCcHHHHH
Confidence 999999987654432221111100 111123445666665 78899999999999999777777899999999999999
Q ss_pred HHHHHHH
Q 042007 821 TLKELCL 827 (844)
Q Consensus 821 ~vr~~~~ 827 (844)
++|++|+
T Consensus 150 ~vr~~v~ 156 (156)
T PF08030_consen 150 DVRNAVN 156 (156)
T ss_dssp HHHHHH-
T ss_pred HHHHHhC
Confidence 9999884
No 46
>PLN03116 ferredoxin--NADP+ reductase; Provisional
Probab=99.92 E-value=1.5e-23 Score=228.79 Aligned_cols=221 Identities=14% Similarity=0.198 Sum_probs=156.7
Q ss_pred ccEEEEEEEEec-----CCEEEEEEeCCCCCccCCCcEEEEEcCCCC------CCCccCcccccCCCC-----CceEEEE
Q 042007 530 HKVEVIKAVIYT-----GNVLALYMTKPPGFKYQSGMYLFVKCPDLS------PFEWHPFSITSAPGD-----YYLSVHI 593 (844)
Q Consensus 530 ~~~~i~~v~~~~-----~~v~~l~i~~p~~~~~~pGQyv~l~~p~~s------~~e~HPFTI~s~p~~-----~~l~l~I 593 (844)
..++|++++.+. +++.+|+++.|..+.|+||||+.|.+|+.. ...+++|||+|+|.+ ..++|+|
T Consensus 25 ~~~~V~~i~~~~~p~~~~~v~~l~l~~~~~~~f~aGQy~~l~~~~~~~~~~g~~~~~R~YSIaS~p~~~~~~~~~lel~V 104 (307)
T PLN03116 25 YTATIVSVERIVGPKAPGETCHIVIDHGGNVPYWEGQSYGVIPPGTNPKKPGAPHNVRLYSIASTRYGDDFDGKTASLCV 104 (307)
T ss_pred EEEEEEeeEEcccCCCCCceEEEEEecCCCCceecCceEeeeCCCCChhhcCCcCCceeEEecCCCCCcCCCCCEEEEEE
Confidence 467888999887 899999999988999999999999887431 125899999999942 2699999
Q ss_pred Eec---------------CCchHHHHHHHHhhcCCCCCCCCCCCcchhhhhhhhhccccccccccCcCEEEEeCccCCCC
Q 042007 594 RTL---------------GDWTTELKQRFEKVCEAPAPAKPNRGNLMRMETKSAANNANFEQIQASFPKILIKGPYGAPA 658 (844)
Q Consensus 594 r~~---------------G~~T~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IdGPyG~~~ 658 (844)
|.. |-.|..|.+ + ++| ..|.|.||+|.+.
T Consensus 105 r~~~~~~~~~~~~~~~~~G~~S~~L~~-l----------~~G-------------------------d~v~v~gP~G~f~ 148 (307)
T PLN03116 105 RRAVYYDPETGKEDPAKKGVCSNFLCD-A----------KPG-------------------------DKVQITGPSGKVM 148 (307)
T ss_pred EEEEEecCCcCCCCCccCcchhhhHhh-C----------CCC-------------------------CEEEEEEecCCce
Confidence 864 667777776 3 456 6899999999875
Q ss_pred C-CC-CCCCeEEEEEcccchhchHHHHHHHHHHhhhcCcchhhhcCCCCCCCcEEEEEEEeCCCChhhhHHHHHHHHhcc
Q 042007 659 Q-DY-KNYDILLLIGLGIGATPFISIIKDLLNHIKSHERDTEFLENGFKKGPERAYFYWVTREQGSFEWFKGVMDDIADH 736 (844)
Q Consensus 659 ~-~~-~~~~~vvlVagGiGITp~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~~v~l~W~~R~~~~~~wf~~~L~~l~~~ 736 (844)
. +- ...+++||||||+||||++||+++++....... ....+++|+|++|+.+++ .|.++|+++++.
T Consensus 149 ~~~~~~~~~~~vlIAgGtGIaP~~sml~~~l~~~~~~~-----------~~~~~v~L~~g~R~~~d~-~~~deL~~l~~~ 216 (307)
T PLN03116 149 LLPEEDPNATHIMVATGTGIAPFRGFLRRMFMEDVPAF-----------KFGGLAWLFLGVANSDSL-LYDDEFERYLKD 216 (307)
T ss_pred eCCCCCCCCcEEEEecCccHHHHHHHHHHHHhhccccc-----------cCCCcEEEEEecCCcccc-hHHHHHHHHHHh
Confidence 3 11 334689999999999999999998875421100 013579999999999987 788999888764
Q ss_pred CCCCeEEEEEEEecccCCCChhHHHHHHHHHhhhhcCCccccccCcccccccCCChHHHHHHHHhh---CCCCcEEEEEe
Q 042007 737 DDKNVIEMHNYLTSVYEEGDARSALIAMVQKLQHAKNGVDIVSESRIKTHFARPNWRKVFGQLATD---HESSRIGVFYC 813 (844)
Q Consensus 737 ~~~~~l~i~~ylT~~~~~~d~~~~~~~~~~~~~~~~~~~d~~sg~~~~~~~gRPd~~~v~~~~~~~---~~~~~v~V~~C 813 (844)
. ..+++++..+++..+... | ++-...+.+.+..+. .......||+|
T Consensus 217 ~-~~~~~~~~~~sr~~~~~~-----------------------g-------~~g~v~~~l~~~~~~~~~~~~~~~~vYiC 265 (307)
T PLN03116 217 Y-PDNFRYDYALSREQKNKK-----------------------G-------GKMYVQDKIEEYSDEIFKLLDNGAHIYFC 265 (307)
T ss_pred C-CCcEEEEEEEccCCcccC-----------------------C-------CccchhhHHHHHHHHHHhhhcCCcEEEEe
Confidence 3 225777766665321110 0 111122233222111 01123579999
Q ss_pred CChhHHHHHHHHHHhh
Q 042007 814 GSATLTKTLKELCLEF 829 (844)
Q Consensus 814 GP~~m~~~vr~~~~~~ 829 (844)
||++|++++++++.+.
T Consensus 266 Gp~~mv~~v~~~L~~~ 281 (307)
T PLN03116 266 GLKGMMPGIQDTLKRV 281 (307)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999998888774
No 47
>PRK08221 anaerobic sulfite reductase subunit B; Provisional
Probab=99.92 E-value=1.1e-23 Score=224.69 Aligned_cols=208 Identities=16% Similarity=0.223 Sum_probs=153.0
Q ss_pred ccEEEEEEEEecCCEEEEEEeCCCCCccCCCcEEEEEcCCCCCCCccCcccccCCCCCceEEEEEecCCchHHHHHHHHh
Q 042007 530 HKVEVIKAVIYTGNVLALYMTKPPGFKYQSGMYLFVKCPDLSPFEWHPFSITSAPGDYYLSVHIRTLGDWTTELKQRFEK 609 (844)
Q Consensus 530 ~~~~i~~v~~~~~~v~~l~i~~p~~~~~~pGQyv~l~~p~~s~~e~HPFTI~s~p~~~~l~l~Ir~~G~~T~~L~~~~~~ 609 (844)
.+++|++++.+++++.+++++.| +.|+||||+.|.+|..+ .|||||++.+ ++.++|+||..|..|..|.++
T Consensus 8 ~~~~v~~i~~~t~~~~~~~l~~~--~~~~pGQfi~l~~~~~~---~~pySi~~~~-~~~~~~~Ik~~G~~S~~L~~l--- 78 (263)
T PRK08221 8 AAYKILDITKHTDIEYTFRVEVD--GPVKPGQFFEVSLPKVG---EAPISVSDYG-DGYIDLTIRRVGKVTDEIFNL--- 78 (263)
T ss_pred ccEEEEEEeccCCcEEEEEecCC--CCCCCCceEEEEeCCCC---cceeeccCCC-CCEEEEEEEeCCchhhHHHhC---
Confidence 35788899999999999999865 58999999999998643 4999999876 678999999999999988653
Q ss_pred hcCCCCCCCCCCCcchhhhhhhhhccccccccccCcCEEEEeCccCC-CCCCCCCCCeEEEEEcccchhchHHHHHHHHH
Q 042007 610 VCEAPAPAKPNRGNLMRMETKSAANNANFEQIQASFPKILIKGPYGA-PAQDYKNYDILLLIGLGIGATPFISIIKDLLN 688 (844)
Q Consensus 610 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IdGPyG~-~~~~~~~~~~vvlVagGiGITp~lsil~~l~~ 688 (844)
++| ..+.|.||||. +..+....+++||||||+||||++|++++++.
T Consensus 79 --------~~G-------------------------d~v~v~gP~G~~f~~~~~~~~~~llIAgGtGItP~~sil~~~~~ 125 (263)
T PRK08221 79 --------KEG-------------------------DKLFLRGPYGNGFPVDTYKGKELIVVAGGTGVAPVKGLMRYFYE 125 (263)
T ss_pred --------CCC-------------------------CEEEEECCCCCCcccCccCCccEEEEcccccHHHHHHHHHHHHh
Confidence 456 67999999998 43333345799999999999999999999875
Q ss_pred HhhhcCcchhhhcCCCCCCCcEEEEEEEeCCCChhhhHHHHHHHHhccCCCCeEEEEEEEecccCCCChhHHHHHHHHHh
Q 042007 689 HIKSHERDTEFLENGFKKGPERAYFYWVTREQGSFEWFKGVMDDIADHDDKNVIEMHNYLTSVYEEGDARSALIAMVQKL 768 (844)
Q Consensus 689 ~~~~~~~~~~~~~~~~~~~~~~v~l~W~~R~~~~~~wf~~~L~~l~~~~~~~~l~i~~ylT~~~~~~d~~~~~~~~~~~~ 768 (844)
+.. ..++++|+|++|+.+++ .|.++|.++++.. .+++.+++..+ +.
T Consensus 126 ~~~---------------~~~~v~L~~g~r~~~~l-~~~~el~~~~~~~-----~~~~~~~~~~~--~~----------- 171 (263)
T PRK08221 126 NPQ---------------EIKSLDLILGFKNPDDI-LFKEDLKRWREKI-----NLILTLDEGEE--GY----------- 171 (263)
T ss_pred Ccc---------------cCceEEEEEecCCHHHh-hHHHHHHHHhhcC-----cEEEEecCCCC--CC-----------
Confidence 421 24689999999999997 7888888877531 23322332110 00
Q ss_pred hhhcCCccccccCcccccccCCChHHHHHHHHhhCCCCcEEEEEeCChhHHHHHHHHHHhhcC
Q 042007 769 QHAKNGVDIVSESRIKTHFARPNWRKVFGQLATDHESSRIGVFYCGSATLTKTLKELCLEFSL 831 (844)
Q Consensus 769 ~~~~~~~d~~sg~~~~~~~gRPd~~~v~~~~~~~~~~~~v~V~~CGP~~m~~~vr~~~~~~~~ 831 (844)
.-+.||.+ +.+.+.... ...+..||+||||+|++++++...+.+-
T Consensus 172 ---------------~~~~G~v~--~~l~~~~~~-~~~~~~vylCGp~~mv~~~~~~L~~~Gv 216 (263)
T PRK08221 172 ---------------RGNVGLVT--KYIPELTLK-DIDNMQVIVVGPPIMMKFTVLEFLKRGI 216 (263)
T ss_pred ---------------ccCccccC--hhhHhccCC-CcCCeEEEEECCHHHHHHHHHHHHHcCC
Confidence 01125554 222222111 1134679999999999999999987653
No 48
>PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional
Probab=99.91 E-value=1.3e-23 Score=238.20 Aligned_cols=230 Identities=18% Similarity=0.325 Sum_probs=167.0
Q ss_pred ccEEEEEEEEecCCEEEEEEeCC--CCCccCCCcEEEEEcCCC-----------------------------CCCCccCc
Q 042007 530 HKVEVIKAVIYTGNVLALYMTKP--PGFKYQSGMYLFVKCPDL-----------------------------SPFEWHPF 578 (844)
Q Consensus 530 ~~~~i~~v~~~~~~v~~l~i~~p--~~~~~~pGQyv~l~~p~~-----------------------------s~~e~HPF 578 (844)
+.++|++++.+++++.+++++.| ..+.|+||||+.|.+|.. ....++||
T Consensus 134 ~~~~V~~~~~ls~~i~~l~l~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~y 213 (409)
T PRK05464 134 WECTVISNDNVATFIKELVLKIPEGEEVPFRAGGYIQIEAPPHKVKYKDFDIPEEYRGDWDKFNLFRLVSKVDEPVIRAY 213 (409)
T ss_pred EEEEEEEcccCCchhheEEEecCCCCcccccCCceEEEEcccccccccccccchhhhhhhhhccccceeccCCCceeeee
Confidence 46788899999999999999877 357899999999999852 12356899
Q ss_pred ccccCCCC-CceEEEEEe-----------cCCchHHHHHHHHhhcCCCCCCCCCCCcchhhhhhhhhccccccccccCcC
Q 042007 579 SITSAPGD-YYLSVHIRT-----------LGDWTTELKQRFEKVCEAPAPAKPNRGNLMRMETKSAANNANFEQIQASFP 646 (844)
Q Consensus 579 TI~s~p~~-~~l~l~Ir~-----------~G~~T~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 646 (844)
||+|+|.+ +.++|+||. .|..|..|.++ ++| .
T Consensus 214 Sias~p~~~~~l~~~vr~~~~~~~~~~~~~G~~S~~L~~l-----------~~G-------------------------d 257 (409)
T PRK05464 214 SMANYPEEKGIIMLNVRIATPPPGNPDVPPGIMSSYIFSL-----------KPG-------------------------D 257 (409)
T ss_pred ccCCCCCCCCeEEEEEEEeecCCCcCCCCCCchhhHHHhC-----------CCC-------------------------C
Confidence 99999965 589999996 38889988753 466 6
Q ss_pred EEEEeCccCCCCCCCCCCCeEEEEEcccchhchHHHHHHHHHHhhhcCcchhhhcCCCCCCCcEEEEEEEeCCCChhhhH
Q 042007 647 KILIKGPYGAPAQDYKNYDILLLIGLGIGATPFISIIKDLLNHIKSHERDTEFLENGFKKGPERAYFYWVTREQGSFEWF 726 (844)
Q Consensus 647 ~v~IdGPyG~~~~~~~~~~~vvlVagGiGITp~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~~v~l~W~~R~~~~~~wf 726 (844)
++.|.||+|.+... ...+++||||||+||||++|++++++.... ..++++|+|++|+.+++ .|
T Consensus 258 ~v~v~gP~G~f~~~-~~~~~ivlIAgGtGIaP~~sml~~~l~~~~---------------~~~~v~L~~g~r~~~d~-~~ 320 (409)
T PRK05464 258 KVTISGPFGEFFAK-DTDAEMVFIGGGAGMAPMRSHIFDQLKRLK---------------SKRKISFWYGARSLREM-FY 320 (409)
T ss_pred EEEEEccccCcEec-CCCceEEEEEeccChhHHHHHHHHHHhCCC---------------CCceEEEEEecCCHHHh-hH
Confidence 79999999998653 456799999999999999999998876421 24689999999999987 67
Q ss_pred HHHHHHHhccCCCCeEEEEEEEecccCCCChhHHHHHHHHHhhhhcCCccccccCcccccccCCChHHHHHHHHhhCC-C
Q 042007 727 KGVMDDIADHDDKNVIEMHNYLTSVYEEGDARSALIAMVQKLQHAKNGVDIVSESRIKTHFARPNWRKVFGQLATDHE-S 805 (844)
Q Consensus 727 ~~~L~~l~~~~~~~~l~i~~ylT~~~~~~d~~~~~~~~~~~~~~~~~~~d~~sg~~~~~~~gRPd~~~v~~~~~~~~~-~ 805 (844)
.++|+++++.. .+++++..+++..+.+.. .| ..|+.+ +.+.+...+.+. .
T Consensus 321 ~~el~~l~~~~--~~~~~~~~~s~~~~~~~~---------------------~g-----~~G~v~-~~l~~~~l~~~~~~ 371 (409)
T PRK05464 321 VEDFDQLAAEN--PNFKWHVALSDPLPEDNW---------------------TG-----YTGFIH-NVLYENYLKDHEAP 371 (409)
T ss_pred HHHHHHHHHhC--CCeEEEEEEcCCCCCCCC---------------------CC-----ccceeC-HHHHHhhhhhcCCC
Confidence 88888886543 356666655543211110 00 113332 222222222211 2
Q ss_pred CcEEEEEeCChhHHHHHHHHHHhhcCCCCceEEEEecCC
Q 042007 806 SRIGVFYCGSATLTKTLKELCLEFSLESPTRFDFHKENF 844 (844)
Q Consensus 806 ~~v~V~~CGP~~m~~~vr~~~~~~~~~~~~~~~~h~E~F 844 (844)
.+..||+|||++|++++++.+.+.+. ..-.+|.|.|
T Consensus 372 ~~~~vyiCGP~~m~~av~~~L~~~Gv---~~~~I~~E~F 407 (409)
T PRK05464 372 EDCEYYMCGPPMMNAAVIKMLKDLGV---EDENILLDDF 407 (409)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHcCC---CHHHEEEccc
Confidence 34679999999999999999987643 3456788877
No 49
>cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD,
Probab=99.91 E-value=2.2e-23 Score=220.89 Aligned_cols=199 Identities=20% Similarity=0.267 Sum_probs=146.9
Q ss_pred EEEEEEEecCCEEEEEEeCCCC-CccCCCcEEEEEcCCCCCCCccCcccccCC-CCCceEEEEEecCCchHHHHHHHHhh
Q 042007 533 EVIKAVIYTGNVLALYMTKPPG-FKYQSGMYLFVKCPDLSPFEWHPFSITSAP-GDYYLSVHIRTLGDWTTELKQRFEKV 610 (844)
Q Consensus 533 ~i~~v~~~~~~v~~l~i~~p~~-~~~~pGQyv~l~~p~~s~~e~HPFTI~s~p-~~~~l~l~Ir~~G~~T~~L~~~~~~~ 610 (844)
+|++++.+++++..++++.|.. ..|+||||+.|+++.. .++|||||+|+| +++.++|+||..|+.|..|.++
T Consensus 2 ~v~~~~~~t~d~~~~~l~~~~~~~~~~pGQf~~l~~~~~--~~~~pySi~s~~~~~~~~~~~vk~~G~~t~~l~~l---- 75 (248)
T cd06219 2 KILEKEELAPNVKLFEIEAPLIAKKAKPGQFVIVRADEK--GERIPLTIADWDPEKGTITIVVQVVGKSTRELATL---- 75 (248)
T ss_pred EEEEEEEeCCCeEEEEEEChhhhccCCCCcEEEEEcCCC--CCccceEeEEEcCCCCEEEEEEEeCCchHHHHHhc----
Confidence 5678888999999999998753 5799999999998642 468999999986 4678999999999999888554
Q ss_pred cCCCCCCCCCCCcchhhhhhhhhccccccccccCcCEE-EEeCccCCCCCCCCCCCeEEEEEcccchhchHHHHHHHHHH
Q 042007 611 CEAPAPAKPNRGNLMRMETKSAANNANFEQIQASFPKI-LIKGPYGAPAQDYKNYDILLLIGLGIGATPFISIIKDLLNH 689 (844)
Q Consensus 611 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~IdGPyG~~~~~~~~~~~vvlVagGiGITp~lsil~~l~~~ 689 (844)
++| .++ .|+||||.+.. ...++++||||||+||||++|+++++...
T Consensus 76 -------~~G-------------------------~~v~~i~gP~G~~~~-~~~~~~~lliagG~GiaP~~~~l~~~~~~ 122 (248)
T cd06219 76 -------EEG-------------------------DKIHDVVGPLGKPSE-IENYGTVVFVGGGVGIAPIYPIAKALKEA 122 (248)
T ss_pred -------CCC-------------------------CEeeeeecCCCCCee-cCCCCeEEEEeCcccHHHHHHHHHHHHHc
Confidence 355 568 69999999754 34567999999999999999999997643
Q ss_pred hhhcCcchhhhcCCCCCCCcEEEEEEEeCCCChhhhHHHHHHHHhccCCCCeEEEEEEEecccCCCChhHHHHHHHHHhh
Q 042007 690 IKSHERDTEFLENGFKKGPERAYFYWVTREQGSFEWFKGVMDDIADHDDKNVIEMHNYLTSVYEEGDARSALIAMVQKLQ 769 (844)
Q Consensus 690 ~~~~~~~~~~~~~~~~~~~~~v~l~W~~R~~~~~~wf~~~L~~l~~~~~~~~l~i~~ylT~~~~~~d~~~~~~~~~~~~~ 769 (844)
.++++|+|++|+.+++ +|.++|.++++. + .+++... ..
T Consensus 123 ------------------~~~v~l~~~~r~~~~~-~~~~el~~l~~~-------~-~~~~~~~---~~------------ 160 (248)
T cd06219 123 ------------------GNRVITIIGARTKDLV-ILEDEFRAVSDE-------L-IITTDDG---SY------------ 160 (248)
T ss_pred ------------------CCeEEEEEEcCCHHHh-hhHHHHHhhcCe-------E-EEEeCCC---CC------------
Confidence 2579999999999997 788888877531 1 1222210 00
Q ss_pred hhcCCccccccCcccccccCCChHHHHHHHHhhCCCCcEEEEEeCChhHHHHHHHHHHhhc
Q 042007 770 HAKNGVDIVSESRIKTHFARPNWRKVFGQLATDHESSRIGVFYCGSATLTKTLKELCLEFS 830 (844)
Q Consensus 770 ~~~~~~d~~sg~~~~~~~gRPd~~~v~~~~~~~~~~~~v~V~~CGP~~m~~~vr~~~~~~~ 830 (844)
+ ..|+- .+.+.+....... ...||+|||++|++.+++.+.+.+
T Consensus 161 ----------~-----~~g~v--~~~l~~~~~~~~~-~~~vyiCGP~~m~~~~~~~l~~~G 203 (248)
T cd06219 161 ----------G-----EKGFV--TDPLKELIESGEK-VDLVIAIGPPIMMKAVSELTRPYG 203 (248)
T ss_pred ----------C-----ccccc--hHHHHHHHhccCC-ccEEEEECCHHHHHHHHHHHHHcC
Confidence 0 00221 2233333322222 236999999999999999887643
No 50
>PTZ00274 cytochrome b5 reductase; Provisional
Probab=99.91 E-value=2.8e-23 Score=226.52 Aligned_cols=224 Identities=14% Similarity=0.140 Sum_probs=161.2
Q ss_pred cccccEEEEEEEEecCCEEEEEEeCCC--CCccCCCcEEEEEcCCC---CCCCccCcccccCCC-CCceEEEEEec--CC
Q 042007 527 DLNHKVEVIKAVIYTGNVLALYMTKPP--GFKYQSGMYLFVKCPDL---SPFEWHPFSITSAPG-DYYLSVHIRTL--GD 598 (844)
Q Consensus 527 ~~~~~~~i~~v~~~~~~v~~l~i~~p~--~~~~~pGQyv~l~~p~~---s~~e~HPFTI~s~p~-~~~l~l~Ir~~--G~ 598 (844)
..+.+++|.+++.+++++.+++|..|. .+.++||||+.+.++.. ..-.++||||+|+|+ +++++|+||.. |.
T Consensus 50 ~~~~~~~V~~i~~~t~dv~~f~f~lp~~~~~~f~pGQ~l~l~~~~~~~~~~~~~R~YSiaS~p~~~~~le~~IK~~~~G~ 129 (325)
T PTZ00274 50 QRYEPYQLGEVIPITHDTALFRFLLHSEEEFNLKPCSTLQACYKYGVQPMDQCQRFYTPVTANHTKGYFDIIVKRKKDGL 129 (325)
T ss_pred CceEEEEEEEEEEeCCCeEEEEEeCCcccccCCCCccEEEEEEecCCCCCCEEEEeeecCCCCCCCCeEEEEEEEcCCCc
Confidence 456788999999999999999998754 68999999999887632 123589999999996 57899999995 66
Q ss_pred chHHHHHHHHhhcCCCCCCCCCCCcchhhhhhhhhccccccccccCcCEEEEeCccCCCCCCCCCCCeEEEEEcccchhc
Q 042007 599 WTTELKQRFEKVCEAPAPAKPNRGNLMRMETKSAANNANFEQIQASFPKILIKGPYGAPAQDYKNYDILLLIGLGIGATP 678 (844)
Q Consensus 599 ~T~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IdGPyG~~~~~~~~~~~vvlVagGiGITp 678 (844)
+|..|.++ ++| ..|.|.||+|....+....+++|||||||||||
T Consensus 130 ~S~~L~~l-----------k~G-------------------------d~v~v~GP~f~~~~~~~~~~~lvlIAGGsGITP 173 (325)
T PTZ00274 130 MTNHLFGM-----------HVG-------------------------DKLLFRSVTFKIQYRPNRWKHVGMIAGGTGFTP 173 (325)
T ss_pred ccHHHhcC-----------CCC-------------------------CEEEEeCCeeecccCCCCCceEEEEeCCcchhH
Confidence 79999853 466 689999998876433334478999999999999
Q ss_pred hHHHHHHHHHHhhhcCcchhhhcCCCCCCCcEEEEEEEeCCCChhhhHHHHHHHHhccCCCCeEEEEEEEecccCCCChh
Q 042007 679 FISIIKDLLNHIKSHERDTEFLENGFKKGPERAYFYWVTREQGSFEWFKGVMDDIADHDDKNVIEMHNYLTSVYEEGDAR 758 (844)
Q Consensus 679 ~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~~v~l~W~~R~~~~~~wf~~~L~~l~~~~~~~~l~i~~ylT~~~~~~d~~ 758 (844)
++||+++++.+..... .....+|+|+|++|+.+++ .|+++|+++++... ++++++..+++..+..+.
T Consensus 174 ~lsmlr~~l~~~~~~~----------~~~~~~v~Llyg~R~~~di-~~~~eL~~La~~~~-~~f~v~~~ls~~~~~~~w- 240 (325)
T PTZ00274 174 MLQIIRHSLTEPWDSG----------EVDRTKLSFLFCNRTERHI-LLKGLFDDLARRYS-NRFKVYYTIDQAVEPDKW- 240 (325)
T ss_pred HHHHHHHHHhcccccc----------cCCCCeEEEEEEcCCHHHh-hHHHHHHHHHHhCC-CcEEEEEEeCCCCcccCC-
Confidence 9999999886532100 0123589999999999997 88999999876532 257776666543211110
Q ss_pred HHHHHHHHHhhhhcCCccccccCcccccccCCChHHHHHHHHhhCCCCcEEEEEeCChhHHHHHHHH
Q 042007 759 SALIAMVQKLQHAKNGVDIVSESRIKTHFARPNWRKVFGQLATDHESSRIGVFYCGSATLTKTLKEL 825 (844)
Q Consensus 759 ~~~~~~~~~~~~~~~~~d~~sg~~~~~~~gRPd~~~v~~~~~~~~~~~~v~V~~CGP~~m~~~vr~~ 825 (844)
.-+.||.+- .++.+........+..||+|||++|++.+...
T Consensus 241 -------------------------~g~~G~V~~-~ll~~~~~~~~~~~~~vylCGPp~Mm~av~~~ 281 (325)
T PTZ00274 241 -------------------------NHFLGYVTK-EMVRRTMPAPEEKKKIIMLCGPDQLLNHVAGT 281 (325)
T ss_pred -------------------------CCCCCccCH-HHHHHhcCCCccCCcEEEEeCCHHHHHHhcCC
Confidence 012266663 23343332111123469999999999999654
No 51
>cd06208 CYPOR_like_FNR These ferredoxin reductases are related to the NADPH cytochrome p450 reductases (CYPOR), but lack the FAD-binding region connecting sub-domain. Ferredoxin-NADP+ reductase (FNR) is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins, such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2, which then
Probab=99.91 E-value=6.2e-23 Score=222.00 Aligned_cols=221 Identities=17% Similarity=0.259 Sum_probs=157.0
Q ss_pred ccEEEEEEEEec-----CCEEEEEEeCCCCCccCCCcEEEEEcCCCC-----CCCccCcccccCCCC-----CceEEEEE
Q 042007 530 HKVEVIKAVIYT-----GNVLALYMTKPPGFKYQSGMYLFVKCPDLS-----PFEWHPFSITSAPGD-----YYLSVHIR 594 (844)
Q Consensus 530 ~~~~i~~v~~~~-----~~v~~l~i~~p~~~~~~pGQyv~l~~p~~s-----~~e~HPFTI~s~p~~-----~~l~l~Ir 594 (844)
..++|++++.+. +++.++++..+..+.|+|||||.|.+|... ....+||||+|.|.+ +.++|+||
T Consensus 9 ~~~~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~pGQ~v~l~~~~~~~~~g~~~~~R~YSIas~p~~~~~~~~~l~l~Vk 88 (286)
T cd06208 9 LIGKVVSNTRLTGPDAPGEVCHIVIDHGGKLPYLEGQSIGIIPPGTDAKNGKPHKLRLYSIASSRYGDDGDGKTLSLCVK 88 (286)
T ss_pred eEEEEEeceeccCCCCCcceEEEEEeCCCcccccCCceEEEECCCcchhcCCCCCceeeEecCCccccCCCCCEEEEEEE
Confidence 357788888887 689999999877889999999999887532 134799999999853 58999999
Q ss_pred ec------------CCchHHHHHHHHhhcCCCCCCCCCCCcchhhhhhhhhccccccccccCcCEEEEeCccCCCCCCC-
Q 042007 595 TL------------GDWTTELKQRFEKVCEAPAPAKPNRGNLMRMETKSAANNANFEQIQASFPKILIKGPYGAPAQDY- 661 (844)
Q Consensus 595 ~~------------G~~T~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IdGPyG~~~~~~- 661 (844)
.. |..|..|.++ ++| .+|.|.||+|.+....
T Consensus 89 ~~~~~~~~~~~~~~G~~S~~L~~l-----------~~G-------------------------d~v~v~gP~G~~~~~~~ 132 (286)
T cd06208 89 RLVYTDPETDETKKGVCSNYLCDL-----------KPG-------------------------DDVQITGPVGKTMLLPE 132 (286)
T ss_pred EEEEecCCCCceeccchHHHHhhC-----------CCC-------------------------CEEEEEeecCCcccCCC
Confidence 87 6788888763 356 6899999999875321
Q ss_pred CCCCeEEEEEcccchhchHHHHHHHHHHhhhcCcchhhhcCCCCCCCcEEEEEEEeCCCChhhhHHHHHHHHhccCCCCe
Q 042007 662 KNYDILLLIGLGIGATPFISIIKDLLNHIKSHERDTEFLENGFKKGPERAYFYWVTREQGSFEWFKGVMDDIADHDDKNV 741 (844)
Q Consensus 662 ~~~~~vvlVagGiGITp~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~~v~l~W~~R~~~~~~wf~~~L~~l~~~~~~~~ 741 (844)
...+++||||||+||||++|++++++....... ...++++|+|++|+.+++ .|.++|+++++.. ...
T Consensus 133 ~~~~~~vlIagGtGIaP~~s~l~~~~~~~~~~~-----------~~~~~v~L~~g~r~~~d~-~~~~el~~l~~~~-~~~ 199 (286)
T cd06208 133 DPNATLIMIATGTGIAPFRSFLRRLFREKHADY-----------KFTGLAWLFFGVPNSDSL-LYDDELEKYPKQY-PDN 199 (286)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHHhhhccc-----------CCCCCEEEEEEecCccch-hHHHHHHHHHHhC-CCc
Confidence 234689999999999999999999876531100 024679999999999997 6888898887642 235
Q ss_pred EEEEEEEecccCCCChhHHHHHHHHHhhhhcCCccccccCcccccccCCChHHHHHH----HHhhCCCCcEEEEEeCChh
Q 042007 742 IEMHNYLTSVYEEGDARSALIAMVQKLQHAKNGVDIVSESRIKTHFARPNWRKVFGQ----LATDHESSRIGVFYCGSAT 817 (844)
Q Consensus 742 l~i~~ylT~~~~~~d~~~~~~~~~~~~~~~~~~~d~~sg~~~~~~~gRPd~~~v~~~----~~~~~~~~~v~V~~CGP~~ 817 (844)
++++..+++........ .|+ +.+.+.+ +.+........||+|||++
T Consensus 200 ~~~~~~~sr~~~~~~g~----------------------------~g~--v~~~i~~~~~~l~~~l~~~~~~vYiCGp~~ 249 (286)
T cd06208 200 FRIDYAFSREQKNADGG----------------------------KMY--VQDRIAEYAEEIWNLLDKDNTHVYICGLKG 249 (286)
T ss_pred EEEEEEEcCCCCCCCCC----------------------------cee--hhhHHHHhHHHHHHHHhcCCcEEEEeCCch
Confidence 77777776532110000 011 1112221 1111111234799999999
Q ss_pred HHHHHHHHHHhh
Q 042007 818 LTKTLKELCLEF 829 (844)
Q Consensus 818 m~~~vr~~~~~~ 829 (844)
|++++++++.++
T Consensus 250 m~~~v~~~L~~~ 261 (286)
T cd06208 250 MEPGVDDALTSV 261 (286)
T ss_pred HHHHHHHHHHHH
Confidence 999999998874
No 52
>TIGR02911 sulfite_red_B sulfite reductase, subunit B. Members of this protein family include the B subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum.
Probab=99.91 E-value=6.3e-23 Score=218.74 Aligned_cols=207 Identities=18% Similarity=0.271 Sum_probs=150.2
Q ss_pred cEEEEEEEEecCCEEEEEEeCCCCCccCCCcEEEEEcCCCCCCCccCcccccCCCCCceEEEEEecCCchHHHHHHHHhh
Q 042007 531 KVEVIKAVIYTGNVLALYMTKPPGFKYQSGMYLFVKCPDLSPFEWHPFSITSAPGDYYLSVHIRTLGDWTTELKQRFEKV 610 (844)
Q Consensus 531 ~~~i~~v~~~~~~v~~l~i~~p~~~~~~pGQyv~l~~p~~s~~e~HPFTI~s~p~~~~l~l~Ir~~G~~T~~L~~~~~~~ 610 (844)
.++|+++...++++..++++.| +.|+||||+.|.+|.. ..|||||++. +++.++|+||..|+.|..|.++
T Consensus 7 ~~~v~~~~~~t~~~~~~~~~~~--~~~~pGQ~v~l~~~~~---~~~pySi~~~-~~~~l~~~Vk~~G~~S~~L~~l---- 76 (261)
T TIGR02911 7 KSEILEIIKHTDIEYTFRMSYD--GPVKPGQFFEVSLPKY---GEAPISVSGI-GEGYIDLTIRRVGKVTDEVFTL---- 76 (261)
T ss_pred eEEEEEEeeccCCEEEEEcCCC--CCCCCCcEEEEEecCC---CccceecCCC-CCCeEEEEEEeCchhhHHHHcC----
Confidence 5778888888899999999765 6799999999999864 3589999984 5688999999999999988642
Q ss_pred cCCCCCCCCCCCcchhhhhhhhhccccccccccCcCEEEEeCccCC-CCCCCCCCCeEEEEEcccchhchHHHHHHHHHH
Q 042007 611 CEAPAPAKPNRGNLMRMETKSAANNANFEQIQASFPKILIKGPYGA-PAQDYKNYDILLLIGLGIGATPFISIIKDLLNH 689 (844)
Q Consensus 611 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IdGPyG~-~~~~~~~~~~vvlVagGiGITp~lsil~~l~~~ 689 (844)
++| .++.|.||||. +..+....+++||||||+||||++|++++++++
T Consensus 77 -------~~G-------------------------d~v~i~gP~G~~f~~~~~~~~~~llIAgGtGIaP~~sil~~l~~~ 124 (261)
T TIGR02911 77 -------KEG-------------------------DNLFLRGPYGNGFDVDNYKHKELVVVAGGTGVAPVKGVVEYFVKN 124 (261)
T ss_pred -------CCC-------------------------CEEEEecCCCCCcccCccCCceEEEEecccCcHHHHHHHHHHHhC
Confidence 356 67999999998 432223457999999999999999999998754
Q ss_pred hhhcCcchhhhcCCCCCCCcEEEEEEEeCCCChhhhHHHHHHHHhccCCCCeEEEEEEEecccCCCChhHHHHHHHHHhh
Q 042007 690 IKSHERDTEFLENGFKKGPERAYFYWVTREQGSFEWFKGVMDDIADHDDKNVIEMHNYLTSVYEEGDARSALIAMVQKLQ 769 (844)
Q Consensus 690 ~~~~~~~~~~~~~~~~~~~~~v~l~W~~R~~~~~~wf~~~L~~l~~~~~~~~l~i~~ylT~~~~~~d~~~~~~~~~~~~~ 769 (844)
.. ..++++|+|++|+.+++ +|.++|+++++.. . ++..+... +.+.+
T Consensus 125 ~~---------------~~~~v~L~~~~r~~~~~-~~~~eL~~l~~~~---~--~~~~~~~~--~~~~~----------- 170 (261)
T TIGR02911 125 PK---------------EIKSLNLILGFKTPDDI-LFKEDIAEWKGNI---N--LTLTLDEA--EEDYK----------- 170 (261)
T ss_pred cc---------------cCceEEEEEecCCHHHh-hHHHHHHHHHhcC---c--EEEEEcCC--CCCCc-----------
Confidence 21 24689999999999997 7888898887531 2 33333221 11110
Q ss_pred hhcCCccccccCcccccccCCChHHHHHHHHhhCCCCcEEEEEeCChhHHHHHHHHHHhhcC
Q 042007 770 HAKNGVDIVSESRIKTHFARPNWRKVFGQLATDHESSRIGVFYCGSATLTKTLKELCLEFSL 831 (844)
Q Consensus 770 ~~~~~~d~~sg~~~~~~~gRPd~~~v~~~~~~~~~~~~v~V~~CGP~~m~~~vr~~~~~~~~ 831 (844)
-..|+-+ +.+.+.... +..+..||+|||++|++++++...+.+.
T Consensus 171 ---------------~~~g~v~--~~l~~~~~~-~~~~~~v~lCGp~~mv~~~~~~L~~~Gv 214 (261)
T TIGR02911 171 ---------------GNIGLVT--KYIPELTLK-DIEEVQAIVVGPPIMMKFTVQELLKKGI 214 (261)
T ss_pred ---------------CCeeccC--HhHHhccCC-CccceEEEEECCHHHHHHHHHHHHHcCC
Confidence 0113333 122221111 1124579999999999999999887653
No 53
>TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit. This model represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=99.91 E-value=3.7e-23 Score=234.25 Aligned_cols=230 Identities=18% Similarity=0.345 Sum_probs=165.4
Q ss_pred ccEEEEEEEEecCCEEEEEEeCCC--CCccCCCcEEEEEcCCC-----------------------------CCCCccCc
Q 042007 530 HKVEVIKAVIYTGNVLALYMTKPP--GFKYQSGMYLFVKCPDL-----------------------------SPFEWHPF 578 (844)
Q Consensus 530 ~~~~i~~v~~~~~~v~~l~i~~p~--~~~~~pGQyv~l~~p~~-----------------------------s~~e~HPF 578 (844)
..++|++++.+++++.+++++.+. ++.|+||||+.|.+|.. ....+|||
T Consensus 130 ~~~~v~~~~~~s~~i~~l~l~~~~~~~~~~~pGQfv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~y 209 (405)
T TIGR01941 130 WECEVISNDNVATFIKELVLKLPDGESVPFKAGGYIQIEAPPHVVKYADFDIPPEYRGDWEKFNLFDLVSKVDEETVRAY 209 (405)
T ss_pred eeeEEEEcccccchhheEEEecCCCceeeecCCceEEEEcccccccccccccchhhhhhHhhhcchheeccCCCccceee
Confidence 457788888899999999998763 46899999999999853 12357999
Q ss_pred ccccCCCC-CceEEEEEec-----------CCchHHHHHHHHhhcCCCCCCCCCCCcchhhhhhhhhccccccccccCcC
Q 042007 579 SITSAPGD-YYLSVHIRTL-----------GDWTTELKQRFEKVCEAPAPAKPNRGNLMRMETKSAANNANFEQIQASFP 646 (844)
Q Consensus 579 TI~s~p~~-~~l~l~Ir~~-----------G~~T~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 646 (844)
||+|+|.+ +.++|+||.. |..|..|.++ ++| .
T Consensus 210 Sias~p~~~~~l~~~vr~~~~~~~~~~~~~G~~S~~L~~l-----------~~G-------------------------d 253 (405)
T TIGR01941 210 SMANYPAEKGIIKLNVRIATPPFINSDIPPGIMSSYIFSL-----------KPG-------------------------D 253 (405)
T ss_pred cCCCCCCCCCeEEEEEEEeccCcccCCCCCCcHHHHHhcC-----------CCc-------------------------C
Confidence 99999964 6899999973 8889988753 466 6
Q ss_pred EEEEeCccCCCCCCCCCCCeEEEEEcccchhchHHHHHHHHHHhhhcCcchhhhcCCCCCCCcEEEEEEEeCCCChhhhH
Q 042007 647 KILIKGPYGAPAQDYKNYDILLLIGLGIGATPFISIIKDLLNHIKSHERDTEFLENGFKKGPERAYFYWVTREQGSFEWF 726 (844)
Q Consensus 647 ~v~IdGPyG~~~~~~~~~~~vvlVagGiGITp~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~~v~l~W~~R~~~~~~wf 726 (844)
++.|.||||.+... ...+++||||||+||||++|++++++.... ..++++|+|++|+.+++ +|
T Consensus 254 ~v~i~gP~G~f~l~-~~~~~lvlIAgGtGIaP~lsmi~~~l~~~~---------------~~~~v~l~~g~R~~~dl-~~ 316 (405)
T TIGR01941 254 KVTISGPFGEFFAK-DTDAEMVFIGGGAGMAPMRSHIFDQLKRLK---------------SKRKISFWYGARSLREM-FY 316 (405)
T ss_pred EEEEEeccCCCeec-CCCCCEEEEecCcCcchHHHHHHHHHhcCC---------------CCCeEEEEEecCCHHHH-hH
Confidence 89999999998653 345789999999999999999998765421 24689999999999987 78
Q ss_pred HHHHHHHhccCCCCeEEEEEEEecccCCCChhHHHHHHHHHhhhhcCCccccccCcccccccCCChHHHHHHHHhhCC-C
Q 042007 727 KGVMDDIADHDDKNVIEMHNYLTSVYEEGDARSALIAMVQKLQHAKNGVDIVSESRIKTHFARPNWRKVFGQLATDHE-S 805 (844)
Q Consensus 727 ~~~L~~l~~~~~~~~l~i~~ylT~~~~~~d~~~~~~~~~~~~~~~~~~~d~~sg~~~~~~~gRPd~~~v~~~~~~~~~-~ 805 (844)
.++++++++.. .++.++..+++..+.+.. .| ..|+.. +.+.....+... .
T Consensus 317 ~~el~~l~~~~--~~~~~~~~~s~~~~~~~~---------------------~g-----~~G~v~-~~l~~~~l~~~~~~ 367 (405)
T TIGR01941 317 QEDFDQLEAEN--PNFVWHVALSDPQPEDNW---------------------TG-----YTGFIH-NVLYENYLKDHDAP 367 (405)
T ss_pred HHHHHHHHHhC--CCeEEEEEeCCCCccCCC---------------------CC-----ccceeC-HHHHHhhhcccCCC
Confidence 88898886543 356776666543221110 01 013322 112222222111 1
Q ss_pred CcEEEEEeCChhHHHHHHHHHHhhcCCCCceEEEEecCC
Q 042007 806 SRIGVFYCGSATLTKTLKELCLEFSLESPTRFDFHKENF 844 (844)
Q Consensus 806 ~~v~V~~CGP~~m~~~vr~~~~~~~~~~~~~~~~h~E~F 844 (844)
.+..||+|||++|++++++.+.+.+-+ .=.+|.|.|
T Consensus 368 ~~~~vylCGP~~m~~av~~~L~~~Gv~---~~~I~~E~F 403 (405)
T TIGR01941 368 EDCEFYMCGPPMMNAAVIKMLEDLGVE---RENILLDDF 403 (405)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCC---HHHEEEecc
Confidence 345799999999999999999886432 345677776
No 54
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=99.91 E-value=7.5e-23 Score=220.55 Aligned_cols=199 Identities=19% Similarity=0.311 Sum_probs=146.5
Q ss_pred EEEEEEEecCCEEEEEEeCCC-CCccCCCcEEEEEcCCCCCCCccCcccccCC-CCCceEEEEEecCCchHHHHHHHHhh
Q 042007 533 EVIKAVIYTGNVLALYMTKPP-GFKYQSGMYLFVKCPDLSPFEWHPFSITSAP-GDYYLSVHIRTLGDWTTELKQRFEKV 610 (844)
Q Consensus 533 ~i~~v~~~~~~v~~l~i~~p~-~~~~~pGQyv~l~~p~~s~~e~HPFTI~s~p-~~~~l~l~Ir~~G~~T~~L~~~~~~~ 610 (844)
+|++++.+++++.++++..|. ...++||||+.|+++.. .++|||||+++| +++.++|+||..|..|+.|.++
T Consensus 3 ~I~~~~~~t~~~~~l~l~~~~~~~~~~pGQfv~l~~~~~--~~~rpySias~~~~~~~i~l~vk~~G~~T~~L~~l---- 76 (281)
T PRK06222 3 KILEKEELAPNVFLMEIEAPRVAKKAKPGQFVIVRIDEK--GERIPLTIADYDREKGTITIVFQAVGKSTRKLAEL---- 76 (281)
T ss_pred EEEEEEEecCCEEEEEEeCchhhccCCCCeEEEEEeCCC--CCceeeEeeEEcCCCCEEEEEEEeCCcHHHHHhcC----
Confidence 577888999999999998775 35799999999999753 357999999976 4678999999999999988743
Q ss_pred cCCCCCCCCCCCcchhhhhhhhhccccccccccCcCEE-EEeCccCCCCCCCCCCCeEEEEEcccchhchHHHHHHHHHH
Q 042007 611 CEAPAPAKPNRGNLMRMETKSAANNANFEQIQASFPKI-LIKGPYGAPAQDYKNYDILLLIGLGIGATPFISIIKDLLNH 689 (844)
Q Consensus 611 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~IdGPyG~~~~~~~~~~~vvlVagGiGITp~lsil~~l~~~ 689 (844)
++| .++ .|.||||.+.. ...++++||||||+||||++++++++.+.
T Consensus 77 -------~~G-------------------------d~v~~i~GP~G~~~~-~~~~~~~llIaGGiGiaPl~~l~~~l~~~ 123 (281)
T PRK06222 77 -------KEG-------------------------DSILDVVGPLGKPSE-IEKFGTVVCVGGGVGIAPVYPIAKALKEA 123 (281)
T ss_pred -------CCC-------------------------CEEeeEEcCCCCCcc-cCCCCeEEEEeCcCcHHHHHHHHHHHHHC
Confidence 456 578 69999998754 34467999999999999999999988643
Q ss_pred hhhcCcchhhhcCCCCCCCcEEEEEEEeCCCChhhhHHHHHHHHhccCCCCeEEEEEEEecccCCCChhHHHHHHHHHhh
Q 042007 690 IKSHERDTEFLENGFKKGPERAYFYWVTREQGSFEWFKGVMDDIADHDDKNVIEMHNYLTSVYEEGDARSALIAMVQKLQ 769 (844)
Q Consensus 690 ~~~~~~~~~~~~~~~~~~~~~v~l~W~~R~~~~~~wf~~~L~~l~~~~~~~~l~i~~ylT~~~~~~d~~~~~~~~~~~~~ 769 (844)
..+++++|..|+.+++ .|.++|.+++.. + +++... +..
T Consensus 124 ------------------~~~v~l~~g~r~~~d~-~~~~el~~~~~~-------~--~v~~~d--~~~------------ 161 (281)
T PRK06222 124 ------------------GNKVITIIGARNKDLL-ILEDEMKAVSDE-------L--YVTTDD--GSY------------ 161 (281)
T ss_pred ------------------CCeEEEEEecCCHHHh-hcHHHHHhhCCe-------E--EEEcCC--CCc------------
Confidence 2479999999999987 677777665431 1 222211 000
Q ss_pred hhcCCccccccCcccccccCCChHHHHHHHHhhCCCCcEEEEEeCChhHHHHHHHHHHhhc
Q 042007 770 HAKNGVDIVSESRIKTHFARPNWRKVFGQLATDHESSRIGVFYCGSATLTKTLKELCLEFS 830 (844)
Q Consensus 770 ~~~~~~d~~sg~~~~~~~gRPd~~~v~~~~~~~~~~~~v~V~~CGP~~m~~~vr~~~~~~~ 830 (844)
| ..|+ ..+.+++....... ...||+|||++|++.+++.+.+.+
T Consensus 162 ----------g-----~~G~--v~~~l~~~~~~~~~-~~~vy~CGP~~M~~~v~~~l~~~g 204 (281)
T PRK06222 162 ----------G-----RKGF--VTDVLKELLESGKK-VDRVVAIGPVIMMKFVAELTKPYG 204 (281)
T ss_pred ----------C-----cccc--hHHHHHHHhhcCCC-CcEEEEECCHHHHHHHHHHHHhcC
Confidence 0 0022 12344444322211 236999999999999999987754
No 55
>PRK05802 hypothetical protein; Provisional
Probab=99.90 E-value=1.7e-22 Score=220.59 Aligned_cols=150 Identities=21% Similarity=0.280 Sum_probs=123.2
Q ss_pred ccEEEEEEEEecCCEEEEEEeCCCC---CccCCCcEEEEEcCCCCCCCccCcccccCCC-CCceEEEEEecCCchHHHHH
Q 042007 530 HKVEVIKAVIYTGNVLALYMTKPPG---FKYQSGMYLFVKCPDLSPFEWHPFSITSAPG-DYYLSVHIRTLGDWTTELKQ 605 (844)
Q Consensus 530 ~~~~i~~v~~~~~~v~~l~i~~p~~---~~~~pGQyv~l~~p~~s~~e~HPFTI~s~p~-~~~l~l~Ir~~G~~T~~L~~ 605 (844)
+.++|++++.+++++.++++..|.. ..++|||||+|++|..+.+..|||||+++|. ++.++|+||..|..|+.|.+
T Consensus 65 ~~~~I~~~~~~t~dv~~l~l~~p~~~~~~~~~PGQFv~l~~~~~~~~~~rP~SI~~~~~~~g~l~l~ik~~G~~T~~L~~ 144 (320)
T PRK05802 65 YECKIIKKENIEDNLIILTLKVPHKLARDLVYPGSFVFLRNKNSSSFFDVPISIMEADTEENIIKVAIEIRGVKTKKIAK 144 (320)
T ss_pred EeEEEEEEEEecCCEEEEEEECCchhhhccCCCCceEEEEEcCCCCEeEEeeEecccCCCCCEEEEEEEecChhHHHHhc
Confidence 4678999999999999999988754 3479999999999865556789999999875 57899999999999999975
Q ss_pred HHHhhcCCCCCCCCCCCcchhhhhhhhhccccccccccCcCEEEEeCccCCC--CC-C--CCCCCeEEEEEcccchhchH
Q 042007 606 RFEKVCEAPAPAKPNRGNLMRMETKSAANNANFEQIQASFPKILIKGPYGAP--AQ-D--YKNYDILLLIGLGIGATPFI 680 (844)
Q Consensus 606 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IdGPyG~~--~~-~--~~~~~~vvlVagGiGITp~l 680 (844)
+ ++| .++.|.||||.. .. + ....+++|+|||||||||++
T Consensus 145 l-----------~~G-------------------------d~l~v~GP~GnG~F~l~~~~~~~~~~~llIaGGiGIaPl~ 188 (320)
T PRK05802 145 L-----------NKG-------------------------DEILLRGPYWNGILGLKNIKSTKNGKSLVIARGIGQAPGV 188 (320)
T ss_pred C-----------CCC-------------------------CEEEEeCCCCcCcCCcccccccCCCeEEEEEeEEeHHHHH
Confidence 4 456 679999999753 21 1 12346899999999999999
Q ss_pred HHHHHHHHHhhhcCcchhhhcCCCCCCCcEEEEEEEeCCCChhhhHHHHHHHHh
Q 042007 681 SIIKDLLNHIKSHERDTEFLENGFKKGPERAYFYWVTREQGSFEWFKGVMDDIA 734 (844)
Q Consensus 681 sil~~l~~~~~~~~~~~~~~~~~~~~~~~~v~l~W~~R~~~~~~wf~~~L~~l~ 734 (844)
+++++++.+. .+|+++|..|+.+++ .+.++|+++.
T Consensus 189 ~l~~~l~~~~------------------~~v~li~g~r~~~~~-~~~~el~~~~ 223 (320)
T PRK05802 189 PVIKKLYSNG------------------NKIIVIIDKGPFKNN-FIKEYLELYN 223 (320)
T ss_pred HHHHHHHHcC------------------CcEEEEEeCCCHHHH-HHHHHHHHhh
Confidence 9999987541 469999999999997 7788887764
No 56
>PTZ00319 NADH-cytochrome B5 reductase; Provisional
Probab=99.90 E-value=2.4e-22 Score=218.32 Aligned_cols=220 Identities=14% Similarity=0.227 Sum_probs=155.3
Q ss_pred ccccEEEEEEEEecCCEEEEEEeCCC---CCccCCCcEEEEEcCCCC----CCCccCcccccCCC-CCceEEEEEec---
Q 042007 528 LNHKVEVIKAVIYTGNVLALYMTKPP---GFKYQSGMYLFVKCPDLS----PFEWHPFSITSAPG-DYYLSVHIRTL--- 596 (844)
Q Consensus 528 ~~~~~~i~~v~~~~~~v~~l~i~~p~---~~~~~pGQyv~l~~p~~s----~~e~HPFTI~s~p~-~~~l~l~Ir~~--- 596 (844)
.+..+++++++.+++++..++++.+. .+.|+||||+.|.++.-. ...+||||++|.|. ++.++|+||..
T Consensus 32 ~~~~~~v~~~~~~s~d~~~~~~~~~~~~~~~~~~pGQfi~l~~~~~~~~~~~~~~R~YS~~s~~~~~~~i~~~Ik~~~~~ 111 (300)
T PTZ00319 32 MFQHFKLIKKTEVTHDTFIFRFALHSPTQRLGLPIGQHIVFRCDCTTPGKPETVQHSYTPISSDDEKGYVDFLIKVYFKG 111 (300)
T ss_pred ceEEEEEEEEEEcCCCceEEEEECCCCcccCCCccceEEEEEEEeCCCCccceEEeeeccCCCcccCCEEEEEEEEeccC
Confidence 34567888999999999999997642 367999999999997532 14589999999885 57899999986
Q ss_pred --------CCchHHHHHHHHhhcCCCCCCCCCCCcchhhhhhhhhccccccccccCcCEEEEeCccCCCCCCC-------
Q 042007 597 --------GDWTTELKQRFEKVCEAPAPAKPNRGNLMRMETKSAANNANFEQIQASFPKILIKGPYGAPAQDY------- 661 (844)
Q Consensus 597 --------G~~T~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IdGPyG~~~~~~------- 661 (844)
|..|+.|.++ ++| ..+.|.||+|.+...-
T Consensus 112 ~~~~~~~~G~~S~~L~~l-----------~~G-------------------------d~v~i~gP~G~f~~~~~~~~~~~ 155 (300)
T PTZ00319 112 VHPSFPNGGRLSQHLYHM-----------KLG-------------------------DKIEMRGPVGKFEYLGNGTYTVH 155 (300)
T ss_pred CCCCCCCCCChhhhhhcC-----------CCC-------------------------CEEEEEccceeeEecCCcceeec
Confidence 8889888543 466 6899999999863210
Q ss_pred --------CCCCeEEEEEcccchhchHHHHHHHHHHhhhcCcchhhhcCCCCCCCcEEEEEEEeCCCChhhhHHHHHHHH
Q 042007 662 --------KNYDILLLIGLGIGATPFISIIKDLLNHIKSHERDTEFLENGFKKGPERAYFYWVTREQGSFEWFKGVMDDI 733 (844)
Q Consensus 662 --------~~~~~vvlVagGiGITp~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~~v~l~W~~R~~~~~~wf~~~L~~l 733 (844)
.+.+.++|||||+||||++|+++.++.+.. ..++++|+|++|+.+++ .|.++|.++
T Consensus 156 ~~~~~~~~~~~~~illIAgGtGIaP~~sml~~l~~~~~---------------~~~~i~liyg~r~~~dl-~~~~eL~~~ 219 (300)
T PTZ00319 156 KGKGGLKTMHVDAFAMIAGGTGITPMLQIIHAIKKNKE---------------DRTKVFLVYANQTEDDI-LLRKELDEA 219 (300)
T ss_pred cccccccccccceEEEEecCcccCHHHHHHHHHHhCCC---------------CCceEEEEEecCCHHHh-hHHHHHHHH
Confidence 134579999999999999999999876421 23589999999999998 677778775
Q ss_pred hccCCCCeEEEEEEEecccCCCChhHHHHHHHHHhhhhcCCccccccCcccccccCCChHHHHHHHHhhCC-----CCcE
Q 042007 734 ADHDDKNVIEMHNYLTSVYEEGDARSALIAMVQKLQHAKNGVDIVSESRIKTHFARPNWRKVFGQLATDHE-----SSRI 808 (844)
Q Consensus 734 ~~~~~~~~l~i~~ylT~~~~~~d~~~~~~~~~~~~~~~~~~~d~~sg~~~~~~~gRPd~~~v~~~~~~~~~-----~~~v 808 (844)
++. .+++++..+++.... +. .+ +.||-+- .++++...... ..+.
T Consensus 220 ~~~---~~~~~~~~~~~~~~~-~~---------------------~~-----~~G~v~~-~~l~~~~~~~~~~~~~~~~~ 268 (300)
T PTZ00319 220 AKD---PRFHVWYTLDREATP-EW---------------------KY-----GTGYVDE-EMLRAHLPVPDPQNSGIKKV 268 (300)
T ss_pred hhC---CCEEEEEEECCCCCC-Cc---------------------cc-----ccceeCH-HHHHhhcCCccccccccCCe
Confidence 432 357776666552111 00 00 1145442 23333322110 1246
Q ss_pred EEEEeCChhHHH-HHHHHHHhhc
Q 042007 809 GVFYCGSATLTK-TLKELCLEFS 830 (844)
Q Consensus 809 ~V~~CGP~~m~~-~vr~~~~~~~ 830 (844)
.||+|||++|++ .+++...+.+
T Consensus 269 ~vyiCGp~~mv~~~~~~~L~~~G 291 (300)
T PTZ00319 269 MALMCGPPPMLQMAVKPNLEKIG 291 (300)
T ss_pred EEEEECCHHHHHHHHHHHHHHcC
Confidence 899999999999 5677776654
No 57
>cd06182 CYPOR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPOR has a C-terminal ferredoxin reducatase (FNR)- like FAD and NAD binding module, an FMN-binding domain, and an additional conecting domain (inserted within the FAD binding region) that orients the FNR and FMN binding domains. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria and participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-t
Probab=99.89 E-value=4.2e-22 Score=212.92 Aligned_cols=206 Identities=16% Similarity=0.251 Sum_probs=148.0
Q ss_pred cCCEEEEEEeCC--CCCccCCCcEEEEEcCCCCCCCccCcccccCCCC--CceEEEEEec-----------CCchHHHHH
Q 042007 541 TGNVLALYMTKP--PGFKYQSGMYLFVKCPDLSPFEWHPFSITSAPGD--YYLSVHIRTL-----------GDWTTELKQ 605 (844)
Q Consensus 541 ~~~v~~l~i~~p--~~~~~~pGQyv~l~~p~~s~~e~HPFTI~s~p~~--~~l~l~Ir~~-----------G~~T~~L~~ 605 (844)
+.++.+|+|..| ..+.|+||||+.|.+|. ...+|||||+|.|++ +.+.|+||.. |..|..|.+
T Consensus 14 ~~~v~~l~l~~~~~~~~~~~pGQ~v~l~~~~--~~~~R~ySias~p~~~~~~l~l~Ik~~~~~~~~~~~~~G~~S~~L~~ 91 (267)
T cd06182 14 PRSTRHLEFDLSGNSVLKYQPGDHLGVIPPN--PLQPRYYSIASSPDVDPGEVHLCVRVVSYEAPAGRIRKGVCSNFLAG 91 (267)
T ss_pred CCceEEEEEecCCCCcCccCCCCEEEEecCC--CCCCeeEeecCCCCCCCCEEEEEEEEEEEecCCCCeeccchhHHHhh
Confidence 467999999988 57899999999999875 457899999999964 7899999987 778888875
Q ss_pred HHHhhcCCCCCCCCCCCcchhhhhhhhhccccccccccCcCEEEEeCccC-CCCCCCCCCCeEEEEEcccchhchHHHHH
Q 042007 606 RFEKVCEAPAPAKPNRGNLMRMETKSAANNANFEQIQASFPKILIKGPYG-APAQDYKNYDILLLIGLGIGATPFISIIK 684 (844)
Q Consensus 606 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IdGPyG-~~~~~~~~~~~vvlVagGiGITp~lsil~ 684 (844)
+ ++| ..+.|.||+| .+..+-...+.+||||||+||||++|+++
T Consensus 92 l-----------k~G-------------------------d~v~v~~p~G~~f~l~~~~~~~~vlIAgGtGIaP~~s~l~ 135 (267)
T cd06182 92 L-----------QLG-------------------------AKVTVFIRPAPSFRLPKDPTTPIIMVGPGTGIAPFRGFLQ 135 (267)
T ss_pred C-----------CCC-------------------------CEEEEEEecCCcccCCCCCCCCEEEEecCccHHHHHHHHH
Confidence 3 356 6899999999 66543334578999999999999999999
Q ss_pred HHHHHhhhcCcchhhhcCCCCCCCcEEEEEEEeCCC-ChhhhHHHHHHHHhccCCCCeEEEEEEEecccCCCChhHHHHH
Q 042007 685 DLLNHIKSHERDTEFLENGFKKGPERAYFYWVTREQ-GSFEWFKGVMDDIADHDDKNVIEMHNYLTSVYEEGDARSALIA 763 (844)
Q Consensus 685 ~l~~~~~~~~~~~~~~~~~~~~~~~~v~l~W~~R~~-~~~~wf~~~L~~l~~~~~~~~l~i~~ylT~~~~~~d~~~~~~~ 763 (844)
+++...... ....+++|+|++|+. +++ .|.++|.++++. ...++++..+++....... .
T Consensus 136 ~~~~~~~~~------------~~~~~v~l~~g~r~~~~d~-~~~del~~~~~~--~~~~~~~~~~S~~~~~~~~--~--- 195 (267)
T cd06182 136 ERAALRANG------------KARGPAWLFFGCRNFASDY-LYREELQEALKD--GALTRLDVAFSREQAEPKV--Y--- 195 (267)
T ss_pred HHHHhhhcc------------ccCCCEEEEEeCCCCcccc-cHHHHHHHHHhC--CCcceEEEEEccCCCCCce--e---
Confidence 988642111 124679999999999 887 788889888773 2356676666643211000 0
Q ss_pred HHHHhhhhcCCccccccCcccccccCCChHHHHHHHHhhCCCCcEEEEEeCChh-HHHHHHHHHHhh
Q 042007 764 MVQKLQHAKNGVDIVSESRIKTHFARPNWRKVFGQLATDHESSRIGVFYCGSAT-LTKTLKELCLEF 829 (844)
Q Consensus 764 ~~~~~~~~~~~~d~~sg~~~~~~~gRPd~~~v~~~~~~~~~~~~v~V~~CGP~~-m~~~vr~~~~~~ 829 (844)
+.+ ...-+ .+.+.+... . ...||+|||++ |++.+.+++.++
T Consensus 196 --------------v~~------~l~~~-~~~l~~~l~---~-~~~vyvCGp~~~m~~~v~~~L~~~ 237 (267)
T cd06182 196 --------------VQD------KLKEH-AEELRRLLN---E-GAHIYVCGDAKSMAKDVEDALVKI 237 (267)
T ss_pred --------------hHH------HHHHh-HHHHHHHHh---c-CCEEEEECCcccchHHHHHHHHHH
Confidence 000 00000 011111111 1 22799999999 999999998886
No 58
>cd06200 SiR_like1 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD
Probab=99.89 E-value=5.8e-22 Score=209.54 Aligned_cols=150 Identities=17% Similarity=0.228 Sum_probs=116.9
Q ss_pred CEEEEEEeCC-CCCccCCCcEEEEEcCCCCCCCccCcccccCCCCCceEEEEEecC-------CchHHHHHHHHhhcCCC
Q 042007 543 NVLALYMTKP-PGFKYQSGMYLFVKCPDLSPFEWHPFSITSAPGDYYLSVHIRTLG-------DWTTELKQRFEKVCEAP 614 (844)
Q Consensus 543 ~v~~l~i~~p-~~~~~~pGQyv~l~~p~~s~~e~HPFTI~s~p~~~~l~l~Ir~~G-------~~T~~L~~~~~~~~~~~ 614 (844)
++.+|++..+ ..+.|+||||+.|.++. ...+|||||+|+|.++.++|+||..+ ..|..|.+.+
T Consensus 17 ~v~~l~l~~~~~~~~f~pGQ~v~l~~~~--~~~~R~YSIas~p~~~~l~l~Vk~~~~~~~~~G~~S~~L~~~~------- 87 (245)
T cd06200 17 PLWRLRLTPPDAGAQWQAGDIAEIGPRH--PLPHREYSIASLPADGALELLVRQVRHADGGLGLGSGWLTRHA------- 87 (245)
T ss_pred ceEEEEEecCCCCCCccCCcEEEecCCC--CCCCcceEeccCCCCCEEEEEEEEeccCCCCCeeechhhhhCC-------
Confidence 5899999887 57899999999999864 45789999999998889999999974 3888887753
Q ss_pred CCCCCCCCcchhhhhhhhhccccccccccCcCEEEEeCccCC-CCCCCCCCCeEEEEEcccchhchHHHHHHHHHHhhhc
Q 042007 615 APAKPNRGNLMRMETKSAANNANFEQIQASFPKILIKGPYGA-PAQDYKNYDILLLIGLGIGATPFISIIKDLLNHIKSH 693 (844)
Q Consensus 615 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IdGPyG~-~~~~~~~~~~vvlVagGiGITp~lsil~~l~~~~~~~ 693 (844)
++| .+|.|.||.|. +..+ ....++||||||+||||++|+++++....
T Consensus 88 ---~~G-------------------------d~v~i~gp~gg~F~~~-~~~~~~vlIAgGtGIaP~~s~l~~~~~~~--- 135 (245)
T cd06200 88 ---PIG-------------------------ASVALRLRENPGFHLP-DDGRPLILIGNGTGLAGLRSHLRARARAG--- 135 (245)
T ss_pred ---CCC-------------------------CEEEEEecCCCcccCC-CCCCCEEEEecCcChHHHHHHHHHHHhcc---
Confidence 355 68999998764 4332 24468999999999999999999987531
Q ss_pred CcchhhhcCCCCCCCcEEEEEEEeCCCC-hhhhHHHHHHHHhccCCCCeEEEEEEEec
Q 042007 694 ERDTEFLENGFKKGPERAYFYWVTREQG-SFEWFKGVMDDIADHDDKNVIEMHNYLTS 750 (844)
Q Consensus 694 ~~~~~~~~~~~~~~~~~v~l~W~~R~~~-~~~wf~~~L~~l~~~~~~~~l~i~~ylT~ 750 (844)
..++++++++|+.+ ++ .|.++|+++++.. ....++..+++
T Consensus 136 --------------~~~~~l~~g~r~~~~d~-~~~~el~~~~~~~--~~~~~~~~~s~ 176 (245)
T cd06200 136 --------------RHRNWLLFGERQAAHDF-FCREELEAWQAAG--HLARLDLAFSR 176 (245)
T ss_pred --------------CCCeEEEEecCCccccH-hHHHHHHHHHHCC--CcceEEEEEcc
Confidence 24688999999984 65 6888898887643 24455555554
No 59
>PLN03115 ferredoxin--NADP(+) reductase; Provisional
Probab=99.89 E-value=7.2e-22 Score=217.72 Aligned_cols=221 Identities=15% Similarity=0.251 Sum_probs=153.1
Q ss_pred EEEEEEEEec-----CCEEEEEEeCCCCCccCCCcEEEEEcCCCC----CCCccCcccccCCC-----CCceEEEEEec-
Q 042007 532 VEVIKAVIYT-----GNVLALYMTKPPGFKYQSGMYLFVKCPDLS----PFEWHPFSITSAPG-----DYYLSVHIRTL- 596 (844)
Q Consensus 532 ~~i~~v~~~~-----~~v~~l~i~~p~~~~~~pGQyv~l~~p~~s----~~e~HPFTI~s~p~-----~~~l~l~Ir~~- 596 (844)
.+++....+. +++.+|++..+..+.|+||||+.|.+|+.. +...+||||+|+|. ++.++|+||..
T Consensus 93 ~~v~~n~~i~~~~~~~~v~~l~l~~~~~~~f~~GQfv~I~~~g~~~~g~p~~~R~YSIAS~p~~~~~~~~~l~L~Vk~~~ 172 (367)
T PLN03115 93 GRCLLNTKITGDDAPGETWHMVFSTEGEIPYREGQSIGVIPDGIDKNGKPHKLRLYSIASSALGDFGDSKTVSLCVKRLV 172 (367)
T ss_pred EEEEeecccccCCCCCceEEEEEcCCCCCCcCCCCEEEEEcCCcCCCCCcCceeeeecCCCCcccCCCCCEEEEEEEEEE
Confidence 3455444443 489999998777889999999999987532 34578999999983 35899999964
Q ss_pred ----------CCchHHHHHHHHhhcCCCCCCCCCCCcchhhhhhhhhccccccccccCcCEEEEeCccCCCCC-CCCCCC
Q 042007 597 ----------GDWTTELKQRFEKVCEAPAPAKPNRGNLMRMETKSAANNANFEQIQASFPKILIKGPYGAPAQ-DYKNYD 665 (844)
Q Consensus 597 ----------G~~T~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IdGPyG~~~~-~~~~~~ 665 (844)
|..|..|.++ ++| ..|.|.||+|.+.. +.....
T Consensus 173 y~~~~g~~~~G~~S~~L~~L-----------k~G-------------------------d~V~v~GP~G~~fllp~~~~~ 216 (367)
T PLN03115 173 YTNDQGEIVKGVCSNFLCDL-----------KPG-------------------------AEVKITGPVGKEMLMPKDPNA 216 (367)
T ss_pred eecCCCccCCeehHhhHhhC-----------CCc-------------------------CEEEEEeecCCceeCCcCCCC
Confidence 6678888763 466 68999999998643 222345
Q ss_pred eEEEEEcccchhchHHHHHHHHHHhhhcCcchhhhcCCCCCCCcEEEEEEEeCCCChhhhHHHHHHHHhccCCCCeEEEE
Q 042007 666 ILLLIGLGIGATPFISIIKDLLNHIKSHERDTEFLENGFKKGPERAYFYWVTREQGSFEWFKGVMDDIADHDDKNVIEMH 745 (844)
Q Consensus 666 ~vvlVagGiGITp~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~~v~l~W~~R~~~~~~wf~~~L~~l~~~~~~~~l~i~ 745 (844)
++||||||+||||++|+|++++....... ....+++|+|++|+.+++ +|.++|+++++.. ..+++++
T Consensus 217 ~iImIAgGTGIAP~rs~L~~~~~~~~~~~-----------~~~~~v~Lf~G~R~~~dl-ly~dELe~l~~~~-p~~f~v~ 283 (367)
T PLN03115 217 TIIMLATGTGIAPFRSFLWKMFFEKHDDY-----------KFNGLAWLFLGVPTSSSL-LYKEEFEKMKEKA-PENFRLD 283 (367)
T ss_pred CEEEEeCCeeHHHHHHHHHHHHhhccccc-----------cCCCcEEEEEccCCHHHh-hHHHHHHHHHHhC-CCCEEEE
Confidence 89999999999999999998765321100 013579999999999987 7889998887643 2367887
Q ss_pred EEEecccCCCChhHHHHHHHHHhhhhcCCccccccCcccccccCCChHHHHHH----HHhhCCCCcEEEEEeCChhHHHH
Q 042007 746 NYLTSVYEEGDARSALIAMVQKLQHAKNGVDIVSESRIKTHFARPNWRKVFGQ----LATDHESSRIGVFYCGSATLTKT 821 (844)
Q Consensus 746 ~ylT~~~~~~d~~~~~~~~~~~~~~~~~~~d~~sg~~~~~~~gRPd~~~v~~~----~~~~~~~~~v~V~~CGP~~m~~~ 821 (844)
..+++..+..+ |.+ |+ +.+.+.+ +.+........||+|||++|++.
T Consensus 284 ~a~SR~~~~~~-----------------------G~k-----gy--Vqd~i~e~~e~l~~~l~~~~~~vYiCGp~~M~~~ 333 (367)
T PLN03115 284 FAVSREQTNAK-----------------------GEK-----MY--IQTRMAEYAEELWELLKKDNTYVYMCGLKGMEKG 333 (367)
T ss_pred EEEcCCCcccC-----------------------Ccc-----ee--ehhHHHHHHHHHHhhcccCCeEEEEeCCHHHHHH
Confidence 77775432111 100 11 1112221 11111122467999999999999
Q ss_pred HHHHHHhhcC
Q 042007 822 LKELCLEFSL 831 (844)
Q Consensus 822 vr~~~~~~~~ 831 (844)
|.++..++..
T Consensus 334 V~~~l~~l~~ 343 (367)
T PLN03115 334 IDDIMVSLAA 343 (367)
T ss_pred HHHHHHHHHH
Confidence 9998877543
No 60
>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein. Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.
Probab=99.87 E-value=5.9e-21 Score=215.52 Aligned_cols=218 Identities=14% Similarity=0.239 Sum_probs=150.0
Q ss_pred ccEEEEEEEEec-----CCEEEEEEeCCC-CCccCCCcEEEEEcCCCC----CCCccCcccccCCCC-----CceEEEEE
Q 042007 530 HKVEVIKAVIYT-----GNVLALYMTKPP-GFKYQSGMYLFVKCPDLS----PFEWHPFSITSAPGD-----YYLSVHIR 594 (844)
Q Consensus 530 ~~~~i~~v~~~~-----~~v~~l~i~~p~-~~~~~pGQyv~l~~p~~s----~~e~HPFTI~s~p~~-----~~l~l~Ir 594 (844)
..++|+.++.+. +++.+|++..+. .+.|+||||+.|.+|... +..++||||+|+|++ +.++|+||
T Consensus 143 ~~a~V~~~~~l~~~~~~~~v~~l~L~~~~~~~~~~pGQfv~l~~pg~~~~g~~~~~R~YSIas~~~~~~~~~~~l~l~Vk 222 (411)
T TIGR03224 143 ITATVVGNYRLTDEDASSDIHHIVLDFGSHPFPVLEGQSIGILPPGTDASGKPHYARMYSVASPRNGERPGYNNLALTVK 222 (411)
T ss_pred eEEEEeeeEEccCCCCCCceEEEEEeCCCCcCCccCCcEEEEecCCcCcCCCcCcceeeeecCCCCccCCCCCEEEEEEE
Confidence 457788888884 489999998765 688999999999998532 346899999998743 46999999
Q ss_pred ec----------CCchHHHHHHHHhhcCCCCCCCCCCCcchhhhhhhhhccccccccccCcCEEEEeCccCCCCC-CCCC
Q 042007 595 TL----------GDWTTELKQRFEKVCEAPAPAKPNRGNLMRMETKSAANNANFEQIQASFPKILIKGPYGAPAQ-DYKN 663 (844)
Q Consensus 595 ~~----------G~~T~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IdGPyG~~~~-~~~~ 663 (844)
.. |..|..|.++ ++| .+|.|.||||.... +...
T Consensus 223 ~v~~~~~g~~~~G~~S~~L~~l-----------k~G-------------------------d~v~v~GP~G~~f~lp~~~ 266 (411)
T TIGR03224 223 RVTTDHQGNAVRGVASNYLCDL-----------KKG-------------------------DKVQVIGPFGSTFLMPNHP 266 (411)
T ss_pred EEEecCCCCcCcccchhHHhcC-----------CCc-------------------------CEEEEEeccCCcccCCCCC
Confidence 86 7788888773 466 68999999998542 2122
Q ss_pred CCeEEEEEcccchhchHHHHHHHHHHhhhcCcchhhhcCCCCCCCcEEEEEEEeCCCChhhhHHHHHHHHhccCCCCeEE
Q 042007 664 YDILLLIGLGIGATPFISIIKDLLNHIKSHERDTEFLENGFKKGPERAYFYWVTREQGSFEWFKGVMDDIADHDDKNVIE 743 (844)
Q Consensus 664 ~~~vvlVagGiGITp~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~~v~l~W~~R~~~~~~wf~~~L~~l~~~~~~~~l~ 743 (844)
..++||||||+||||++|+++++......+ ...+++|+|++|+.+++ .|.++|+++.+. .++
T Consensus 267 ~~~lllIagGtGIAP~~s~l~~~~~~~~~~-------------~~~~v~L~~G~Rt~~dl-~y~~eL~~l~~~----~~~ 328 (411)
T TIGR03224 267 ESSIMMICTGTGSAPMRAMTERRRRRRDHG-------------EGGKLMLFFGARTKEEL-PYFGPLQKLPKD----FID 328 (411)
T ss_pred CCCEEEEecccCcHHHHHHHHHHHHHhhcC-------------CCCCEEEEEecCccccc-hHHHHHHHHHhc----Cce
Confidence 468999999999999999999987643211 24689999999999998 667778777643 244
Q ss_pred EEEEEecccCCCChhHHHHHHHHHhhhhcCCccccccCcccccccCCChHHHHHHHHhhCCCCcEEEEEeCChhHHHHHH
Q 042007 744 MHNYLTSVYEEGDARSALIAMVQKLQHAKNGVDIVSESRIKTHFARPNWRKVFGQLATDHESSRIGVFYCGSATLTKTLK 823 (844)
Q Consensus 744 i~~ylT~~~~~~d~~~~~~~~~~~~~~~~~~~d~~sg~~~~~~~gRPd~~~v~~~~~~~~~~~~v~V~~CGP~~m~~~vr 823 (844)
+++.+++..+. .+.. +. ..-|-+..++. ++... .+..||+|||++|++++.
T Consensus 329 ~~~~~sr~~~~--~~g~-----------------V~------d~l~~~~~~v~-~ll~~---~~~~vYiCGp~~M~~~v~ 379 (411)
T TIGR03224 329 INFAFSRTPEQ--PKRY-----------------VQ------DAIRERAADVA-ALLKD---PNTYIYICGLKGMEEGVL 379 (411)
T ss_pred EEEEeccCCcc--Cccc-----------------Hh------hHHHHhHHHHH-HHHhc---CCcEEEEECCHHHHHHHH
Confidence 55444432110 0000 00 00011111111 11111 134799999999988888
Q ss_pred HHHHhhc
Q 042007 824 ELCLEFS 830 (844)
Q Consensus 824 ~~~~~~~ 830 (844)
+++.+..
T Consensus 380 ~~L~~~~ 386 (411)
T TIGR03224 380 DAFRDVC 386 (411)
T ss_pred HHHHHHH
Confidence 8887754
No 61
>cd06201 SiR_like2 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via F
Probab=99.87 E-value=6.7e-21 Score=206.14 Aligned_cols=209 Identities=18% Similarity=0.275 Sum_probs=147.7
Q ss_pred cccEEEEEEEEec----CCEEEEEEeCCC-------CCccCCCcEEEEEcCCCCCCCccCcccccCCCCCceEEEEEe--
Q 042007 529 NHKVEVIKAVIYT----GNVLALYMTKPP-------GFKYQSGMYLFVKCPDLSPFEWHPFSITSAPGDYYLSVHIRT-- 595 (844)
Q Consensus 529 ~~~~~i~~v~~~~----~~v~~l~i~~p~-------~~~~~pGQyv~l~~p~~s~~e~HPFTI~s~p~~~~l~l~Ir~-- 595 (844)
..+.++++.+.++ .++..+++..|. ...|+||||+.|.+++. ...|||||+|+|+++.+.|+||.
T Consensus 45 ~~~~~l~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~pGQ~v~v~~~g~--~~~R~YSias~p~~g~l~l~Vk~~~ 122 (289)
T cd06201 45 TKALELVERKDYGAAVQAPTAILRFKPAKRKLSGKGLPSFEAGDLLGILPPGS--DVPRFYSLASSSSDGFLEICVRKHP 122 (289)
T ss_pred ccceEEEeeeecCCCCCCccEEEEEeCCCcccccCCCCCcCccCEEEEecCCC--CCCceEecCCCCCCCeEEEEEEeCC
Confidence 4577888888887 589999998775 46799999999986643 35799999999988899999998
Q ss_pred cCCchHHHHHHHHhhcCCCCCCCCCCCcchhhhhhhhhccccccccccCcCEEEEe-CccCCCCCCCCCCCeEEEEEccc
Q 042007 596 LGDWTTELKQRFEKVCEAPAPAKPNRGNLMRMETKSAANNANFEQIQASFPKILIK-GPYGAPAQDYKNYDILLLIGLGI 674 (844)
Q Consensus 596 ~G~~T~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Id-GPyG~~~~~~~~~~~vvlVagGi 674 (844)
.|..|..|.++ ++| .++.+. +|+|.+..+ ...+.+||||||+
T Consensus 123 ~G~~S~~L~~l-----------~~G-------------------------d~v~v~~~~~g~F~~~-~~~~~lvlIAgGt 165 (289)
T cd06201 123 GGLCSGYLHGL-----------KPG-------------------------DTIKAFIRPNPSFRPA-KGAAPVILIGAGT 165 (289)
T ss_pred CccchhhHhhC-----------CCc-------------------------CEEEEEeccCCCccCC-CCCCCEEEEecCc
Confidence 58899998863 466 567776 478877643 3457899999999
Q ss_pred chhchHHHHHHHHHHhhhcCcchhhhcCCCCCCCcEEEEEEEeCCCC-hhhhHHHHHHHHhccCCCCeEEEEEEEecccC
Q 042007 675 GATPFISIIKDLLNHIKSHERDTEFLENGFKKGPERAYFYWVTREQG-SFEWFKGVMDDIADHDDKNVIEMHNYLTSVYE 753 (844)
Q Consensus 675 GITp~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~~v~l~W~~R~~~-~~~wf~~~L~~l~~~~~~~~l~i~~ylT~~~~ 753 (844)
||||++|++++.. ..++++|+|++|+.+ ++ .|.++|+++++.. ..+.++..+++...
T Consensus 166 GIaP~~s~l~~~~-------------------~~~~v~L~~g~r~~~~d~-~~~~eL~~l~~~~--~~~~~~~~~s~~~~ 223 (289)
T cd06201 166 GIAPLAGFIRANA-------------------ARRPMHLYWGGRDPASDF-LYEDELDQYLADG--RLTQLHTAFSRTPD 223 (289)
T ss_pred CHHHHHHHHHhhh-------------------ccCCEEEEEEecCcccch-HHHHHHHHHHHcC--CCceEEEEECCCCC
Confidence 9999999998641 135799999999985 55 7889998887643 23445444443211
Q ss_pred CCChhHHHHHHHHHhhhhcCCccccccCcccccccCCChHHHHHHHHhhCCCCcEEEEEeCChhHHHHHHHHHHhhc
Q 042007 754 EGDARSALIAMVQKLQHAKNGVDIVSESRIKTHFARPNWRKVFGQLATDHESSRIGVFYCGSATLTKTLKELCLEFS 830 (844)
Q Consensus 754 ~~d~~~~~~~~~~~~~~~~~~~d~~sg~~~~~~~gRPd~~~v~~~~~~~~~~~~v~V~~CGP~~m~~~vr~~~~~~~ 830 (844)
.+-. . ...|-+...+ ..... ....||+|||++|++.+++.+.+.-
T Consensus 224 ~g~v---------------------~------~~l~~~~~~l-~~~~~----~~~~vyiCGp~~M~~~v~~~L~~i~ 268 (289)
T cd06201 224 GAYV---------------------Q------DRLRADAERL-RRLIE----DGAQIMVCGSRAMAQGVAAVLEEIL 268 (289)
T ss_pred cccc---------------------h------hHHHHhHHHH-HHHHH----CCcEEEEECCHHHHHHHHHHHHHHH
Confidence 1000 0 0011111111 11111 1347999999999999999887743
No 62
>KOG0534 consensus NADH-cytochrome b-5 reductase [Coenzyme transport and metabolism; Energy production and conversion]
Probab=99.87 E-value=5.8e-21 Score=200.40 Aligned_cols=222 Identities=14% Similarity=0.229 Sum_probs=175.3
Q ss_pred cccEEEEEEEEecCCEEEEEEeCCC---CCccCCCcEEEEEcCCCCCCCccCcccccCCCC-CceEEEEEec--CCchHH
Q 042007 529 NHKVEVIKAVIYTGNVLALYMTKPP---GFKYQSGMYLFVKCPDLSPFEWHPFSITSAPGD-YYLSVHIRTL--GDWTTE 602 (844)
Q Consensus 529 ~~~~~i~~v~~~~~~v~~l~i~~p~---~~~~~pGQyv~l~~p~~s~~e~HPFTI~s~p~~-~~l~l~Ir~~--G~~T~~ 602 (844)
+...++.+.+.++.|+-..+|..|. .+....|||+++.+|-....-.+|||-.|.+.+ +++.+.||.. |..|+.
T Consensus 51 ~~~~~l~~k~~~shdt~~f~f~lp~~~~~l~lp~g~hv~~~~~i~g~~vvRpYTPvs~~~~~g~~~l~VK~Y~~G~mS~~ 130 (286)
T KOG0534|consen 51 YYPFRLIDKTELSHDTSLFRFVLPSADHVLGLPIGQHVVLKAPIGGKLVVRPYTPVSLDDDKGYFDLVVKVYPKGKMSQH 130 (286)
T ss_pred eEEEEEEEEEeccCCceeEEEecCCchhccCcccceEEEEEecCCCcEEEEecCCccCccccceEEEEEEeccCCcccHH
Confidence 5677888889999998888888773 467899999999999877778899999999877 7999999997 889999
Q ss_pred HHHHHHhhcCCCCCCCCCCCcchhhhhhhhhccccccccccCcCEEEEeCccCCCCCCCCCCCeEEEEEcccchhchHHH
Q 042007 603 LKQRFEKVCEAPAPAKPNRGNLMRMETKSAANNANFEQIQASFPKILIKGPYGAPAQDYKNYDILLLIGLGIGATPFISI 682 (844)
Q Consensus 603 L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IdGPyG~~~~~~~~~~~vvlVagGiGITp~lsi 682 (844)
|.++ +.| ..|.+.||.|...-+...++++.+||||+||||++++
T Consensus 131 l~~L-----------kiG-------------------------d~ve~rGP~G~~~~~~~~~~~l~miAgGtGItPmlqi 174 (286)
T KOG0534|consen 131 LDSL-----------KIG-------------------------DTVEFRGPIGEFKYDPQKAKHLGMIAGGTGITPMLQL 174 (286)
T ss_pred HhcC-----------CCC-------------------------CEEEEecCccceEecCCCcceEEEEecccchhhHHHH
Confidence 9876 566 6899999999876544568999999999999999999
Q ss_pred HHHHHHHhhhcCcchhhhcCCCCCCCcEEEEEEEeCCCChhhhHHHHHHHHhccCCCCeEEEEEEEecccCCCChhHHHH
Q 042007 683 IKDLLNHIKSHERDTEFLENGFKKGPERAYFYWVTREQGSFEWFKGVMDDIADHDDKNVIEMHNYLTSVYEEGDARSALI 762 (844)
Q Consensus 683 l~~l~~~~~~~~~~~~~~~~~~~~~~~~v~l~W~~R~~~~~~wf~~~L~~l~~~~~~~~l~i~~ylT~~~~~~d~~~~~~ 762 (844)
+++++.+.. ...+++|++++++++++ +++++|+++++.... .+.++.+++...+..+.
T Consensus 175 i~~il~~~~---------------d~tki~lly~N~te~DI-Llr~eL~~la~~~p~-rf~~~y~v~~~~~~w~~----- 232 (286)
T KOG0534|consen 175 IRAILKDPE---------------DTTKISLLYANKTEDDI-LLREELEELASKYPE-RFKVWYVVDQPPEIWDG----- 232 (286)
T ss_pred HHHHhcCCC---------------CCcEEEEEEecCCcccc-chHHHHHHHHhhCcc-eEEEEEEEcCCcccccC-----
Confidence 999987632 36889999999999998 999999999887643 88898888775432221
Q ss_pred HHHHHhhhhcCCccccccCcccccccCCChHHHHHHHHhhCCCCcEEEEEeCChhHHHH-HHHHHHhhcCC
Q 042007 763 AMVQKLQHAKNGVDIVSESRIKTHFARPNWRKVFGQLATDHESSRIGVFYCGSATLTKT-LKELCLEFSLE 832 (844)
Q Consensus 763 ~~~~~~~~~~~~~d~~sg~~~~~~~gRPd~~~v~~~~~~~~~~~~v~V~~CGP~~m~~~-vr~~~~~~~~~ 832 (844)
..|+++-+.+-..+....++ ++.+++||||+|++. +..+..+++.+
T Consensus 233 -----------------------~~g~It~~~i~~~l~~~~~~-~~~~liCGPp~m~~~~~~~~le~Lg~~ 279 (286)
T KOG0534|consen 233 -----------------------SVGFITKDLIKEHLPPPKEG-ETLVLICGPPPMINGAAQGNLEKLGYN 279 (286)
T ss_pred -----------------------ccCccCHHHHHhhCCCCCCC-CeEEEEECCHHHHhHHHHHHHHhcCCC
Confidence 11666654443333333333 689999999999985 44455546544
No 63
>COG0543 UbiB 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.87 E-value=1e-20 Score=200.26 Aligned_cols=204 Identities=23% Similarity=0.361 Sum_probs=151.1
Q ss_pred cEEEEEEEEecCCEEEEEEeCCCC-CccCCCcEEEEEcCCCCCCCccCcccccCCCC-CceEEEEEe--cCCchHHHHHH
Q 042007 531 KVEVIKAVIYTGNVLALYMTKPPG-FKYQSGMYLFVKCPDLSPFEWHPFSITSAPGD-YYLSVHIRT--LGDWTTELKQR 606 (844)
Q Consensus 531 ~~~i~~v~~~~~~v~~l~i~~p~~-~~~~pGQyv~l~~p~~s~~e~HPFTI~s~p~~-~~l~l~Ir~--~G~~T~~L~~~ 606 (844)
..+|.+++.+++++..+++..|.. +.++||||+.|+.|. ....|||++|.|++ +.+.++|+. .|..|+.+.++
T Consensus 9 ~~~I~~~~~is~~~~~l~~~~~~~~~~~~pGQfv~l~~~~---~~~~P~si~~~~~~~g~~~l~i~~~~~G~~T~~i~~~ 85 (252)
T COG0543 9 SYKVVEKEEISPDTFLLRLRLPFVALTFKPGQFVMLRVPG---GVRRPYSLASAPDDKGELELHIRVYEVGKVTKYIFGL 85 (252)
T ss_pred ccEEEEEEEecCceEEEEEeccccccccCCCcEEEEEeCC---CcEEEeeeccCCCcCCcEEEEEEEEeCChHHHHHhhc
Confidence 368899999999999999887654 689999999999998 48999999999974 555666655 79999999876
Q ss_pred HHhhcCCCCCCCCCCCcchhhhhhhhhccccccccccCcCEEEEeCccCCCCCCCCCCCeEEEEEcccchhchHHHHHHH
Q 042007 607 FEKVCEAPAPAKPNRGNLMRMETKSAANNANFEQIQASFPKILIKGPYGAPAQDYKNYDILLLIGLGIGATPFISIIKDL 686 (844)
Q Consensus 607 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IdGPyG~~~~~~~~~~~vvlVagGiGITp~lsil~~l 686 (844)
++| ..+.|.||||.+...-...+.+++||||+|++|+.++++++
T Consensus 86 -----------k~g-------------------------d~i~v~GP~G~~~~~~~~~~~vlliagGtG~aPl~~i~~~~ 129 (252)
T COG0543 86 -----------KEG-------------------------DKIRVRGPLGNGFLREKIGKPVLLIAGGTGIAPLYAIAKEL 129 (252)
T ss_pred -----------cCC-------------------------CEEEEEcCCCCCccccccCCcEEEEecccCHhHHHHHHHHH
Confidence 245 56999999999875332334499999999999999999999
Q ss_pred HHHhhhcCcchhhhcCCCCCCCcEEEEEEEeCCCChhhhHHHHHHHHhccCCCCeEEEEEEEecccCCCChhHHHHHHHH
Q 042007 687 LNHIKSHERDTEFLENGFKKGPERAYFYWVTREQGSFEWFKGVMDDIADHDDKNVIEMHNYLTSVYEEGDARSALIAMVQ 766 (844)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~~~~~~~v~l~W~~R~~~~~~wf~~~L~~l~~~~~~~~l~i~~ylT~~~~~~d~~~~~~~~~~ 766 (844)
..+. ...+|+++|..|+.+++ .+.++|.++++. +++.. |.. +..
T Consensus 130 ~~~~----------------~~~~V~~~~G~~~~~dl-~~~~el~~~~~~------~~~~~-~~~----~~~-------- 173 (252)
T COG0543 130 KEKG----------------DANKVTLLYGARTAKDL-LLLDELEELAEK------EVHPV-TDD----GWK-------- 173 (252)
T ss_pred HhcC----------------CCceEEEEEeccChhhc-ccHHHHHHhhcC------cEEEE-ECC----CCC--------
Confidence 7642 24789999999999998 667777777643 23222 221 110
Q ss_pred HhhhhcCCccccccCcccccccCCChHHHHHHHHhhCCCCcEEEEEeCChhHHHHHHHHHHhhcC
Q 042007 767 KLQHAKNGVDIVSESRIKTHFARPNWRKVFGQLATDHESSRIGVFYCGSATLTKTLKELCLEFSL 831 (844)
Q Consensus 767 ~~~~~~~~~d~~sg~~~~~~~gRPd~~~v~~~~~~~~~~~~v~V~~CGP~~m~~~vr~~~~~~~~ 831 (844)
| ..|-.. .++++++... +...||+||||+|++.+++.+.....
T Consensus 174 -------------G-----~~G~v~-~~~~~~~~~~---~~~~v~~cGp~~M~~~v~~~~~~~g~ 216 (252)
T COG0543 174 -------------G-----RKGFVT-TDVLKELLDL---EVDDVYICGPPAMVKAVREKLKEYGV 216 (252)
T ss_pred -------------c-----cCccee-HHHHhhhccc---cCCEEEEECCHHHHHHHHHHHHhcCC
Confidence 0 001110 2344444332 23479999999999999999988763
No 64
>PLN02252 nitrate reductase [NADPH]
Probab=99.86 E-value=8.1e-21 Score=230.15 Aligned_cols=224 Identities=13% Similarity=0.196 Sum_probs=165.5
Q ss_pred cccccEEEEEEEEecCCEEEEEEeCCCC---CccCCCcEEEEEcCCCCCCCccCcccccCCC-CCceEEEEEec------
Q 042007 527 DLNHKVEVIKAVIYTGNVLALYMTKPPG---FKYQSGMYLFVKCPDLSPFEWHPFSITSAPG-DYYLSVHIRTL------ 596 (844)
Q Consensus 527 ~~~~~~~i~~v~~~~~~v~~l~i~~p~~---~~~~pGQyv~l~~p~~s~~e~HPFTI~s~p~-~~~l~l~Ir~~------ 596 (844)
..+..+++++++.++.++..++|..|.. +.++|||||+|.++.-+....||||++|.|+ +++++|+||..
T Consensus 632 ~~~~~~~Lv~k~~lS~d~~~f~f~lp~~~~~lgl~pGQhV~l~~~~~g~~~~R~YSpaS~~~~~g~lel~VK~~~~~~~~ 711 (888)
T PLN02252 632 REKIPCRLVEKISLSHDVRLFRFALPSEDHVLGLPVGKHVFLCATINGKLCMRAYTPTSSDDEVGHFELVIKVYFKNVHP 711 (888)
T ss_pred CceEEEEEEEEEEccCCeEEEEEEECCCcccCCCCCCCEEEEEEecCCeEEEeeeEecccCCCCCEEEEEEEEEeccccC
Confidence 4457889999999999999999987654 5789999999998644444689999999986 47899999986
Q ss_pred -----CCchHHHHHHHHhhcCCCCCCCCCCCcchhhhhhhhhccccccccccCcCEEEEeCccCCCCC--------C--C
Q 042007 597 -----GDWTTELKQRFEKVCEAPAPAKPNRGNLMRMETKSAANNANFEQIQASFPKILIKGPYGAPAQ--------D--Y 661 (844)
Q Consensus 597 -----G~~T~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IdGPyG~~~~--------~--~ 661 (844)
|..|+.|.++ ++| ..|.|.||+|.+.. + .
T Consensus 712 ~~p~gG~~S~~L~~L-----------~vG-------------------------d~V~V~GP~G~f~y~g~G~f~l~~~~ 755 (888)
T PLN02252 712 KFPNGGLMSQYLDSL-----------PIG-------------------------DTIDVKGPLGHIEYAGRGSFLVNGKP 755 (888)
T ss_pred ccCCCCchhhHHhcC-----------CCC-------------------------CEEEEecCccceeecccceeeecccc
Confidence 7788888543 456 67999999997521 1 1
Q ss_pred CCCCeEEEEEcccchhchHHHHHHHHHHhhhcCcchhhhcCCCCCCCcEEEEEEEeCCCChhhhHHHHHHHHhccCCCCe
Q 042007 662 KNYDILLLIGLGIGATPFISIIKDLLNHIKSHERDTEFLENGFKKGPERAYFYWVTREQGSFEWFKGVMDDIADHDDKNV 741 (844)
Q Consensus 662 ~~~~~vvlVagGiGITp~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~~v~l~W~~R~~~~~~wf~~~L~~l~~~~~~~~ 741 (844)
...++++|||||+||||++++|++++.... ..++++|+|++|+.+++ .|+++|+++++.. .+.
T Consensus 756 ~~~~~vvmIAGGsGITPi~silr~ll~~~~---------------d~t~i~Liyg~Rt~~Di-l~~eEL~~la~~~-p~~ 818 (888)
T PLN02252 756 KFAKKLAMLAGGTGITPMYQVIQAILRDPE---------------DKTEMSLVYANRTEDDI-LLREELDRWAAEH-PDR 818 (888)
T ss_pred ccCceEEEEecceehhHHHHHHHHHHhccC---------------CCCcEEEEEEECCHHHh-hHHHHHHHHHHhC-CCC
Confidence 235789999999999999999999986421 24689999999999998 7899999987643 246
Q ss_pred EEEEEEEecccCCCChhHHHHHHHHHhhhhcCCccccccCcccccccCCChHHHHHHHHhhCCCCcEEEEEeCChhHHHH
Q 042007 742 IEMHNYLTSVYEEGDARSALIAMVQKLQHAKNGVDIVSESRIKTHFARPNWRKVFGQLATDHESSRIGVFYCGSATLTKT 821 (844)
Q Consensus 742 l~i~~ylT~~~~~~d~~~~~~~~~~~~~~~~~~~d~~sg~~~~~~~gRPd~~~v~~~~~~~~~~~~v~V~~CGP~~m~~~ 821 (844)
++++..+|+..++ +. .| ..||.+ +.++++..... ..+..||+|||++|++.
T Consensus 819 ~~v~~vls~~~~~-~w---------------------~g-----~~GrV~-~~ll~~~l~~~-~~~~~vyiCGPp~Mi~~ 869 (888)
T PLN02252 819 LKVWYVVSQVKRE-GW---------------------KY-----SVGRVT-EAMLREHLPEG-GDETLALMCGPPPMIEF 869 (888)
T ss_pred EEEEEEecCCCcC-CC---------------------CC-----cCCcCC-HHHHHHhcccC-CCCeEEEEeCCHHHHHH
Confidence 7777666643211 10 01 126665 33455444322 23567999999999995
Q ss_pred -HHHHHHhhcCC
Q 042007 822 -LKELCLEFSLE 832 (844)
Q Consensus 822 -vr~~~~~~~~~ 832 (844)
++..+.+.+.+
T Consensus 870 av~~~L~~~G~~ 881 (888)
T PLN02252 870 ACQPNLEKMGYD 881 (888)
T ss_pred HHHHHHHHcCCC
Confidence 77777776543
No 65
>PF08022 FAD_binding_8: FAD-binding domain; InterPro: IPR013112 This FAD binding domain is associated with ferric reductase NAD binding proteins and the heavy chain of Cytochrome b-245.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.
Probab=99.84 E-value=1.3e-22 Score=185.12 Aligned_cols=100 Identities=31% Similarity=0.743 Sum_probs=7.2
Q ss_pred ccEEEEEEEEecCCEEEEEEeCCCC-CccCCCcEEEEEcCCCC--CCCccCcccccCCCCCceEEEEEecCCchHHHHHH
Q 042007 530 HKVEVIKAVIYTGNVLALYMTKPPG-FKYQSGMYLFVKCPDLS--PFEWHPFSITSAPGDYYLSVHIRTLGDWTTELKQR 606 (844)
Q Consensus 530 ~~~~i~~v~~~~~~v~~l~i~~p~~-~~~~pGQyv~l~~p~~s--~~e~HPFTI~s~p~~~~l~l~Ir~~G~~T~~L~~~ 606 (844)
.++++++++.+++++++|++++|.. ++|+||||+||++|.++ .||||||||+|+|+++.++++||+.||||++|.+.
T Consensus 2 ~~~~~~~v~~~~~~~v~i~i~~~~~~~~~~pGq~v~l~~p~~s~~~~q~HPFTIas~~~~~~i~l~ik~~g~~T~~L~~~ 81 (105)
T PF08022_consen 2 FNVRIASVELLPDDVVEITIPKPSSPFKWKPGQYVFLSFPSISKWFWQWHPFTIASSPEDNSITLIIKARGGWTKRLYEH 81 (105)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CcEEEEEEEEcCCCEEEEEEECCCCCCCCCCceEEEEEEcCcCcCcccccccEeeccCCCCEEEEEEEeCCCchHHHHHH
Confidence 3567889999999999999999886 99999999999999999 56999999999999999999999999999999998
Q ss_pred HHhhcCCCCCCCCCCCcchhhhhhhhhccccccccccCcCEEEEeCccCCC
Q 042007 607 FEKVCEAPAPAKPNRGNLMRMETKSAANNANFEQIQASFPKILIKGPYGAP 657 (844)
Q Consensus 607 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IdGPyG~~ 657 (844)
+.+... +. ....++.||||||.+
T Consensus 82 ~~~~~~-------~~---------------------~~~~~v~idGPYG~~ 104 (105)
T PF08022_consen 82 LSESPS-------KQ---------------------GNRLRVFIDGPYGAP 104 (105)
T ss_dssp -------------------------------------------TTSTTSHH
T ss_pred Hhhhcc-------cC---------------------CCceEEEEECCCCCC
Confidence 754210 00 013789999999975
No 66
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=99.82 E-value=2.7e-19 Score=219.92 Aligned_cols=212 Identities=13% Similarity=0.213 Sum_probs=148.1
Q ss_pred cccEEEEEEEEecCCEEEEEEeCCCC-CccCCCcEEEEEcCCCCCCCccCcccccCCC-CCceEEEEEecCCchHHHHHH
Q 042007 529 NHKVEVIKAVIYTGNVLALYMTKPPG-FKYQSGMYLFVKCPDLSPFEWHPFSITSAPG-DYYLSVHIRTLGDWTTELKQR 606 (844)
Q Consensus 529 ~~~~~i~~v~~~~~~v~~l~i~~p~~-~~~~pGQyv~l~~p~~s~~e~HPFTI~s~p~-~~~l~l~Ir~~G~~T~~L~~~ 606 (844)
...++|++++.+++++..+++..|.. ..++||||+.|.++..+ +++||||++.|. ++.++|+||..|..|..|.++
T Consensus 648 ~~~~~I~~~~~lt~dv~~~~l~~p~~~~~~~PGQFv~L~~~~~g--e~rP~SIas~~~~~g~i~l~Vk~vG~~T~~L~~l 725 (944)
T PRK12779 648 QIPQTIVGKVQLAGGIVEFTVRAPMVARSAQAGQFVRVLPWEKG--ELIPLTLADWDAEKGTIDLVVQGMGTSSLEINRM 725 (944)
T ss_pred ceEEEEEEEEEecCCEEEEEEeCCCccccCCCCceEEEEeCCCC--CEEeEEccCCCCCCCEEEEEEEeeccHHHHHhcC
Confidence 45678899999999999999987754 47999999999986433 579999999874 678999999999888777543
Q ss_pred HHhhcCCCCCCCCCCCcchhhhhhhhhccccccccccCcCEEE-EeCccCCCCCC--CCCCCeEEEEEcccchhchHHHH
Q 042007 607 FEKVCEAPAPAKPNRGNLMRMETKSAANNANFEQIQASFPKIL-IKGPYGAPAQD--YKNYDILLLIGLGIGATPFISII 683 (844)
Q Consensus 607 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-IdGPyG~~~~~--~~~~~~vvlVagGiGITp~lsil 683 (844)
++| ..+. |.||+|.+... ....+++||||||+||||++|++
T Consensus 726 -----------k~G-------------------------d~l~~I~GPlG~~f~~~~~~~~~~vllIAGGiGIAPl~sl~ 769 (944)
T PRK12779 726 -----------AIG-------------------------DAFSGIAGPLGRASELHRYEGNQTVVFCAGGVGLPPVYPIM 769 (944)
T ss_pred -----------CCc-------------------------CEEeeeecCCCCCcCCccccCCCcEEEEEccEeHHHHHHHH
Confidence 466 5784 99999987531 11236899999999999999999
Q ss_pred HHHHHHhhhcCcchhhhcCCCCCCCcEEEEEEEeCCCChhhhHHHHH---HHHhccCCCCeEEEEEEEecccCCCChhHH
Q 042007 684 KDLLNHIKSHERDTEFLENGFKKGPERAYFYWVTREQGSFEWFKGVM---DDIADHDDKNVIEMHNYLTSVYEEGDARSA 760 (844)
Q Consensus 684 ~~l~~~~~~~~~~~~~~~~~~~~~~~~v~l~W~~R~~~~~~wf~~~L---~~l~~~~~~~~l~i~~ylT~~~~~~d~~~~ 760 (844)
+.+... ..+|+|+|++|+.+++ .+.+++ .++++.. ...+++ +++... +..
T Consensus 770 r~l~~~------------------g~~V~li~G~Rs~edl-~~~del~~L~~la~~~-~~~~~v--~~ttdd--gs~--- 822 (944)
T PRK12779 770 RAHLRL------------------GNHVTLISGFRAKEFL-FWTGDDERVGKLKAEF-GDQLDV--IYTTND--GSF--- 822 (944)
T ss_pred HHHHHC------------------CCCEEEEEEeCCHHHh-hhHHHHHHHHHHHHHc-CCCeEE--EEEecC--CCC---
Confidence 988653 2469999999999887 444444 4444322 223333 344311 000
Q ss_pred HHHHHHHhhhhcCCccccccCcccccccCCChHHHHHHHHhhCC---C-CcEEEEEeCChhHHHHHHHHHHhhcC
Q 042007 761 LIAMVQKLQHAKNGVDIVSESRIKTHFARPNWRKVFGQLATDHE---S-SRIGVFYCGSATLTKTLKELCLEFSL 831 (844)
Q Consensus 761 ~~~~~~~~~~~~~~~d~~sg~~~~~~~gRPd~~~v~~~~~~~~~---~-~~v~V~~CGP~~m~~~vr~~~~~~~~ 831 (844)
| ..|+.+ +.+.+...... + ....||+|||++|++.+.+.+.+.+-
T Consensus 823 -------------------G-----~~G~Vt--~~l~~ll~~~~~~~~~~~~~Vy~CGP~~Mmkav~~~l~~~Gv 871 (944)
T PRK12779 823 -------------------G-----VKGFVT--GPLEEMLKANQQGKGRTIAEVIAIGPPLMMRAVSDLTKPYGV 871 (944)
T ss_pred -------------------C-----CccccC--hHHHHHHHhcccccccCCcEEEEECCHHHHHHHHHHHHHcCC
Confidence 0 013333 23333332221 1 12469999999999999999877643
No 67
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=99.82 E-value=4e-19 Score=216.74 Aligned_cols=199 Identities=20% Similarity=0.308 Sum_probs=146.7
Q ss_pred EEEEEEEecCCEEEEEEeCCCC-CccCCCcEEEEEcCCCCCCCccCcccccCCC-CCceEEEEEecCCchHHHHHHHHhh
Q 042007 533 EVIKAVIYTGNVLALYMTKPPG-FKYQSGMYLFVKCPDLSPFEWHPFSITSAPG-DYYLSVHIRTLGDWTTELKQRFEKV 610 (844)
Q Consensus 533 ~i~~v~~~~~~v~~l~i~~p~~-~~~~pGQyv~l~~p~~s~~e~HPFTI~s~p~-~~~l~l~Ir~~G~~T~~L~~~~~~~ 610 (844)
+|++++.+++++..+++..|.. ..++||||+.|+++..+ +.|||||++.|. ++.++|+||..|..|..|.++
T Consensus 3 ~I~~~~~~t~~v~~l~l~~p~~~~~~~pGQFv~l~~~~~~--~~rp~Si~~~~~~~g~i~~~vk~vG~~T~~L~~l---- 76 (752)
T PRK12778 3 KIVEKEIFSEKVFLLEIEAPLIAKSRKPGQFVIVRVGEKG--ERIPLTIADADPEKGTITLVIQEVGLSTTKLCEL---- 76 (752)
T ss_pred EEEEEEEEcCCEEEEEEeCCchhccCCCCeeEEEEeCCCC--CeeEEEeeeeCCCCCEEEEEEEEcCchHHHHhcC----
Confidence 5778888999999999987753 57999999999997543 579999999874 678999999999999999764
Q ss_pred cCCCCCCCCCCCcchhhhhhhhhccccccccccCcCEE-EEeCccCCCCCCCCCCCeEEEEEcccchhchHHHHHHHHHH
Q 042007 611 CEAPAPAKPNRGNLMRMETKSAANNANFEQIQASFPKI-LIKGPYGAPAQDYKNYDILLLIGLGIGATPFISIIKDLLNH 689 (844)
Q Consensus 611 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~IdGPyG~~~~~~~~~~~vvlVagGiGITp~lsil~~l~~~ 689 (844)
++| ..+ .|.||||.+.. ....++++|||||+||||++++++++...
T Consensus 77 -------~~G-------------------------d~v~~v~GP~G~~~~-~~~~~~~llvaGG~GiaPl~~l~~~l~~~ 123 (752)
T PRK12778 77 -------NEG-------------------------DYITDVVGPLGNPSE-IENYGTVVCAGGGVGVAPMLPIVKALKAA 123 (752)
T ss_pred -------CCC-------------------------CEeCeEeCCCCCCcc-CCCCCeEEEEECCEeHHHHHHHHHHHHHC
Confidence 466 578 79999999865 33457999999999999999999998753
Q ss_pred hhhcCcchhhhcCCCCCCCcEEEEEEEeCCCChhhhHHHHHHHHhccCCCCeEEEEEEEecccCCCChhHHHHHHHHHhh
Q 042007 690 IKSHERDTEFLENGFKKGPERAYFYWVTREQGSFEWFKGVMDDIADHDDKNVIEMHNYLTSVYEEGDARSALIAMVQKLQ 769 (844)
Q Consensus 690 ~~~~~~~~~~~~~~~~~~~~~v~l~W~~R~~~~~~wf~~~L~~l~~~~~~~~l~i~~ylT~~~~~~d~~~~~~~~~~~~~ 769 (844)
..+++++|+.|+.+++ .|.++|.+++.. + +++... +..
T Consensus 124 ------------------~~~v~l~~g~r~~~~l-~~~~el~~~~~~-----~----~~~t~d--g~~------------ 161 (752)
T PRK12778 124 ------------------GNRVITILGGRSKELI-ILEDEMRESSDE-----V----IIMTDD--GSY------------ 161 (752)
T ss_pred ------------------CCeEEEEeccCCHHHh-hhHHHHHhhcCe-----E----EEEECC--CCC------------
Confidence 2479999999999987 566777665431 1 222110 000
Q ss_pred hhcCCccccccCcccccccCCChHHHHHHHHhhCCCCcEEEEEeCChhHHHHHHHHHHhhc
Q 042007 770 HAKNGVDIVSESRIKTHFARPNWRKVFGQLATDHESSRIGVFYCGSATLTKTLKELCLEFS 830 (844)
Q Consensus 770 ~~~~~~d~~sg~~~~~~~gRPd~~~v~~~~~~~~~~~~v~V~~CGP~~m~~~vr~~~~~~~ 830 (844)
| +.|+. .+++.+..... .....||+|||++|++.+.+.+.+.+
T Consensus 162 ----------g-----~~G~v--~~~l~~~~~~~-~~~~~vy~CGP~~M~~~v~~~l~~~g 204 (752)
T PRK12778 162 ----------G-----RKGLV--TDGLEEVIKRE-TKVDKVFAIGPAIMMKFVCLLTKKYG 204 (752)
T ss_pred ----------C-----CcccH--HHHHHHHhhcC-CCCCEEEEECCHHHHHHHHHHHHHcC
Confidence 0 00221 23344443221 11236999999999999999987754
No 68
>cd06193 siderophore_interacting Siderophore interacting proteins share the domain structure of the ferredoxin reductase like family. Siderophores are produced in various bacteria (and some plants) to extract iron from hosts. Binding constants are high, so iron can be pilfered from transferrin and lactoferrin for bacterial uptake, contributing to pathogen virulence. Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hy
Probab=99.82 E-value=7.5e-19 Score=184.83 Aligned_cols=134 Identities=14% Similarity=0.107 Sum_probs=108.6
Q ss_pred EEEEEEecCCEEEEEEeCCCC---CccCCCcEEEEEcCCCC-------------------CCCccCcccccCC-CCCceE
Q 042007 534 VIKAVIYTGNVLALYMTKPPG---FKYQSGMYLFVKCPDLS-------------------PFEWHPFSITSAP-GDYYLS 590 (844)
Q Consensus 534 i~~v~~~~~~v~~l~i~~p~~---~~~~pGQyv~l~~p~~s-------------------~~e~HPFTI~s~p-~~~~l~ 590 (844)
|++++.+++++++|+++.|.. ..|+||||+.|.+|..+ ...+++|||++.| ++++++
T Consensus 1 V~~~~~~s~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~YSi~~~~~~~~~l~ 80 (235)
T cd06193 1 VVRVERLTPHMRRITLGGPDLAGFPSDGPDQHVKLLFPDPGQAPPVLPVLGRRRWPPEEPRPVMRTYTVRRFDPEAGELD 80 (235)
T ss_pred CceeEecCCCEEEEEEecCccccCCCCCCCceEEEEecCCCCCCCCCccccccccCCcccCCcCcccceeEEcCCCCEEE
Confidence 356778899999999988764 57899999999998643 4678999999986 578899
Q ss_pred EEEEec---CCchHHHHHHHHhhcCCCCCCCCCCCcchhhhhhhhhccccccccccCcCEEEEeCccCCCCCCCCCCCeE
Q 042007 591 VHIRTL---GDWTTELKQRFEKVCEAPAPAKPNRGNLMRMETKSAANNANFEQIQASFPKILIKGPYGAPAQDYKNYDIL 667 (844)
Q Consensus 591 l~Ir~~---G~~T~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IdGPyG~~~~~~~~~~~v 667 (844)
|.|+.. |..|+.|.++ ++| .+|.|.||+|.+... ...+++
T Consensus 81 ~~v~~~~~~G~~s~~l~~l-----------~~G-------------------------d~v~v~gP~G~~~~~-~~~~~~ 123 (235)
T cd06193 81 IDFVLHGDEGPASRWAASA-----------QPG-------------------------DTLGIAGPGGSFLPP-PDADWY 123 (235)
T ss_pred EEEEeCCCCCchHHHHhhC-----------CCC-------------------------CEEEEECCCCCCCCC-CCcceE
Confidence 999877 5577777543 466 689999999998753 345789
Q ss_pred EEEEcccchhchHHHHHHHHHHhhhcCcchhhhcCCCCCCCcEEEEEEEeCCCChh
Q 042007 668 LLIGLGIGATPFISIIKDLLNHIKSHERDTEFLENGFKKGPERAYFYWVTREQGSF 723 (844)
Q Consensus 668 vlVagGiGITp~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~~v~l~W~~R~~~~~ 723 (844)
||||||+||||+++|++.+.. ..++++++.+|+.+++
T Consensus 124 vlia~GtGi~p~~~il~~~~~-------------------~~~~~~~~~~~~~~d~ 160 (235)
T cd06193 124 LLAGDETALPAIAAILEELPA-------------------DARGTALIEVPDAADE 160 (235)
T ss_pred EEEeccchHHHHHHHHHhCCC-------------------CCeEEEEEEECCHHHc
Confidence 999999999999999987631 2579999999998554
No 69
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=99.80 E-value=1.8e-18 Score=218.46 Aligned_cols=223 Identities=15% Similarity=0.162 Sum_probs=158.4
Q ss_pred ccccEEEEEEE---EecCCEEEEEEeCCCC---CccCCCcEEEEEcCCCCCCCccCcccccCCCC-CceEEEEEec-CCc
Q 042007 528 LNHKVEVIKAV---IYTGNVLALYMTKPPG---FKYQSGMYLFVKCPDLSPFEWHPFSITSAPGD-YYLSVHIRTL-GDW 599 (844)
Q Consensus 528 ~~~~~~i~~v~---~~~~~v~~l~i~~p~~---~~~~pGQyv~l~~p~~s~~e~HPFTI~s~p~~-~~l~l~Ir~~-G~~ 599 (844)
.|.++++.+++ .++.++..++|..|.. +.|+|||||.|.++.-+.-.+++||++|.|++ +.+.|+||.. |..
T Consensus 913 ~w~~~~l~~~~~~~~~~~~~~~~~f~lp~~~~~~~~~pGQfv~l~~~~~g~~~~R~YS~~S~p~~~~~i~l~Vr~~~G~~ 992 (1167)
T PTZ00306 913 KWTTVVVREVREGGQFGTGSRVLRFNLPGALQRSGLTLGQFIAIRGDWDGQQLIGYYSPITLPDDLGVISILARGDKGTL 992 (1167)
T ss_pred ceEEEEEEEEeccccccCCeEEEEEECCCcccccCCCCCeEEEEEeeeCCeEEEEEeccCCCCCCCCeEEEEEEcCCChh
Confidence 35677788776 4577888888877653 46999999999986433334799999999965 6799999984 778
Q ss_pred hHHHHHHHHhhcCCCCCCCCCCCcchhhhhhhhhccccccccccCcCEEEEeCccCCC----------CCCCCCCCeEEE
Q 042007 600 TTELKQRFEKVCEAPAPAKPNRGNLMRMETKSAANNANFEQIQASFPKILIKGPYGAP----------AQDYKNYDILLL 669 (844)
Q Consensus 600 T~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IdGPyG~~----------~~~~~~~~~vvl 669 (844)
|..|.++ ++| ..|.|.||+|.. ..+-...+++||
T Consensus 993 S~~L~~l-----------~~G-------------------------d~v~v~gp~G~~~~~~p~~~~f~~~~~~~~~ivl 1036 (1167)
T PTZ00306 993 KEWISAL-----------RPG-------------------------DSVEMKACGGLRIERRPADKQFVFRGHVIRKLAL 1036 (1167)
T ss_pred HHHHhhC-----------CCC-------------------------CEEEEeCCcCccccccCccceeeeccCCCceEEE
Confidence 9988543 466 689999998842 111133468999
Q ss_pred EEcccchhchHHHHHHHHHHhhhcCcchhhhcCCCCCCCcEEEEEEEeCCCChhhhHHHHHHHHhccCCCCeEEEEEEEe
Q 042007 670 IGLGIGATPFISIIKDLLNHIKSHERDTEFLENGFKKGPERAYFYWVTREQGSFEWFKGVMDDIADHDDKNVIEMHNYLT 749 (844)
Q Consensus 670 VagGiGITp~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~~v~l~W~~R~~~~~~wf~~~L~~l~~~~~~~~l~i~~ylT 749 (844)
||||+||||++||+++++.+... ...++++|+|++|+.+++ +|.++|.++++.. ++++.++..++
T Consensus 1037 IAGGtGItP~~sml~~~l~~~~~-------------~~~~~i~Llyg~r~~~dl-~~~~eL~~l~~~~-~~~f~~~~~ls 1101 (1167)
T PTZ00306 1037 IAGGTGVAPMLQIIRAALKKPYV-------------DSIESIRLIYAAEDVSEL-TYRELLESYRKEN-PGKFKCHFVLN 1101 (1167)
T ss_pred EECCccHhHHHHHHHHHHhCccc-------------CCCceEEEEEEeCCHHHh-hHHHHHHHHHHHC-CCCEEEEEEEC
Confidence 99999999999999998764210 024689999999999998 7889999887643 23577776666
Q ss_pred cccCCCChhHHHHHHHHHhhhhcCCccccccCcccccccCCChHHHHHHHHhhCCCCcEEEEEeCChhHHHHHHHHHHhh
Q 042007 750 SVYEEGDARSALIAMVQKLQHAKNGVDIVSESRIKTHFARPNWRKVFGQLATDHESSRIGVFYCGSATLTKTLKELCLEF 829 (844)
Q Consensus 750 ~~~~~~d~~~~~~~~~~~~~~~~~~~d~~sg~~~~~~~gRPd~~~v~~~~~~~~~~~~v~V~~CGP~~m~~~vr~~~~~~ 829 (844)
+..+ +. .+ ..||.+- .++++.... +..+..||+|||++|++++++.+.+.
T Consensus 1102 ~~~~--~w---------------------~~-----~~G~i~~-~~l~~~l~~-~~~~~~vyiCGP~~mv~~v~~~L~~~ 1151 (1167)
T PTZ00306 1102 NPPE--GW---------------------TD-----GVGFVDR-ALLQSALQP-PSKDLLVAICGPPVMQRAVKADLLAL 1151 (1167)
T ss_pred CCCc--cc---------------------CC-----CCCCCCH-HHHHHhcCC-CCCCeEEEEeCCHHHHHHHHHHHHHc
Confidence 4211 10 00 1155442 234443221 12346799999999999999999886
Q ss_pred cC
Q 042007 830 SL 831 (844)
Q Consensus 830 ~~ 831 (844)
+.
T Consensus 1152 G~ 1153 (1167)
T PTZ00306 1152 GY 1153 (1167)
T ss_pred CC
Confidence 54
No 70
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.80 E-value=1.2e-18 Score=167.10 Aligned_cols=139 Identities=19% Similarity=0.301 Sum_probs=121.8
Q ss_pred CchHHHHHHHHHHHccc--CCCCcCHHHHhhcc---CCCCCHHHHHHHHHHHhcccCCCCCCceeHHHHHHHHHHhc-cC
Q 042007 97 KENDAWRSIERRFQQFA--VSGRLPKDKFGICV---GMGESTEFSVGVFEALARRRKVNTENGITKEEVRMFWEDMT-KK 170 (844)
Q Consensus 97 ~~~~~~~~l~~~F~~ld--~dG~is~~eF~~~l---g~~~~~~~~~~lf~~l~~~~~~d~dG~I~f~EF~~~l~~~~-~~ 170 (844)
...+++++++++|..+| ++|.|++.||..++ |...++.++.++++.++. +.+.|+|.||+.+|.... ..
T Consensus 14 ~t~~qi~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~-----~~~~idf~~Fl~~ms~~~~~~ 88 (160)
T COG5126 14 LTEEQIQELKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDA-----GNETVDFPEFLTVMSVKLKRG 88 (160)
T ss_pred CCHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccC-----CCCccCHHHHHHHHHHHhccC
Confidence 44578899999999988 69999999999887 888888899999997663 478899999999998766 66
Q ss_pred ChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhhccccccccccchHHHHHHHHHHhCCCCCCceeHHHHHHHHHcCC
Q 042007 171 DLDARLQIFFDMCDKNGDGILTEDEVREVIVLSASENKLSNLKENSSTYAALIMEKLDPDCKGYIEMWQLEILLRGMV 248 (844)
Q Consensus 171 ~~~~~l~~~F~~fD~d~dG~It~eEl~~il~~~~~~~~l~~~~~~~~e~~~~if~~~D~d~dG~It~~EF~~ll~~~~ 248 (844)
+.+++++.||+.||+|+||+|+.+||+.+++... ++..+++++.|++++|.|+||+|+|+||.+++...+
T Consensus 89 ~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lg--------e~~~deev~~ll~~~d~d~dG~i~~~eF~~~~~~~~ 158 (160)
T COG5126 89 DKEEELREAFKLFDKDHDGYISIGELRRVLKSLG--------ERLSDEEVEKLLKEYDEDGDGEIDYEEFKKLIKDSP 158 (160)
T ss_pred CcHHHHHHHHHHhCCCCCceecHHHHHHHHHhhc--------ccCCHHHHHHHHHhcCCCCCceEeHHHHHHHHhccC
Confidence 7899999999999999999999999999997432 455688999999999999999999999999987654
No 71
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=99.79 E-value=8.6e-19 Score=174.13 Aligned_cols=146 Identities=16% Similarity=0.286 Sum_probs=125.6
Q ss_pred chHHHHHHHHHHHccc---CCCCcCHHHHhhccCCCCCHHHHHHHHHHHhcccCCCCCCc-eeHHHHHHHHHHhccCCh-
Q 042007 98 ENDAWRSIERRFQQFA---VSGRLPKDKFGICVGMGESTEFSVGVFEALARRRKVNTENG-ITKEEVRMFWEDMTKKDL- 172 (844)
Q Consensus 98 ~~~~~~~l~~~F~~ld---~dG~is~~eF~~~lg~~~~~~~~~~lf~~l~~~~~~d~dG~-I~f~EF~~~l~~~~~~~~- 172 (844)
...+++.++.+|.+++ ++|.++++||..+.... ..++++++++.++ .+++|. |+|+||+..++.+.....
T Consensus 28 s~~EI~~L~~rF~kl~~~~~~g~lt~eef~~i~~~~-~Np~~~rI~~~f~----~~~~~~~v~F~~Fv~~ls~f~~~~~~ 102 (187)
T KOG0034|consen 28 SANEIERLYERFKKLDRNNGDGYLTKEEFLSIPELA-LNPLADRIIDRFD----TDGNGDPVDFEEFVRLLSVFSPKASK 102 (187)
T ss_pred CHHHHHHHHHHHHHhccccccCccCHHHHHHHHHHh-cCcHHHHHHHHHh----ccCCCCccCHHHHHHHHhhhcCCccH
Confidence 3579999999999999 57999999999998555 5688999999777 344555 999999999999986654
Q ss_pred HHHHHHHHHHhccCCCCcccHHHHHHHHHhhhccccccccccchHHHHHHHHHHhCCCCCCceeHHHHHHHHHcCCC
Q 042007 173 DARLQIFFDMCDKNGDGILTEDEVREVIVLSASENKLSNLKENSSTYAALIMEKLDPDCKGYIEMWQLEILLRGMVN 249 (844)
Q Consensus 173 ~~~l~~~F~~fD~d~dG~It~eEl~~il~~~~~~~~l~~~~~~~~e~~~~if~~~D~d~dG~It~~EF~~ll~~~~~ 249 (844)
++|++.||++||+|+||+|+.+|+++++......+... .+++.++.++.+|+++|.|+||+|+|+||.+++.+.|.
T Consensus 103 ~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~-~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~~~P~ 178 (187)
T KOG0034|consen 103 REKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDM-SDEQLEDIVDKTFEEADTDGDGKISFEEFCKVVEKQPD 178 (187)
T ss_pred HHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcc-hHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHcCcc
Confidence 55999999999999999999999999997765533332 57888999999999999999999999999999998874
No 72
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.78 E-value=1.9e-18 Score=171.65 Aligned_cols=159 Identities=19% Similarity=0.246 Sum_probs=132.9
Q ss_pred hhhhhhhhhhhccCCCchHHHHHHHHHHHcccCCCCcCHHHHhhcc----CCCCCHHHHHHHHHHHhcccCCCCCCceeH
Q 042007 82 RGLQSLRFLDRTVTGKENDAWRSIERRFQQFAVSGRLPKDKFGICV----GMGESTEFSVGVFEALARRRKVNTENGITK 157 (844)
Q Consensus 82 ~~l~~l~~i~~~~~~~~~~~~~~l~~~F~~ld~dG~is~~eF~~~l----g~~~~~~~~~~lf~~l~~~~~~d~dG~I~f 157 (844)
..++.+...++ ....++++.++.|..-+++|.++.++|++++ .....+.+++.+|+.++ .|+||.|+|
T Consensus 12 ~~~e~l~~~t~----f~~~ei~~~Yr~Fk~~cP~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD----~~~dg~i~F 83 (193)
T KOG0044|consen 12 ESLEQLVQQTK----FSKKEIQQWYRGFKNECPSGRLTLEEFREIYASFFPDGDASKYAELVFRTFD----KNKDGTIDF 83 (193)
T ss_pred HHHHHHHHhcC----CCHHHHHHHHHHhcccCCCCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhc----ccCCCCcCH
Confidence 34455554444 4457899999999996699999999999887 33456779999999777 578999999
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhhcccc---ccccccchHHHHHHHHHHhCCCCCCc
Q 042007 158 EEVRMFWEDMTKKDLDARLQIFFDMCDKNGDGILTEDEVREVIVLSASENK---LSNLKENSSTYAALIMEKLDPDCKGY 234 (844)
Q Consensus 158 ~EF~~~l~~~~~~~~~~~l~~~F~~fD~d~dG~It~eEl~~il~~~~~~~~---l~~~~~~~~e~~~~if~~~D~d~dG~ 234 (844)
.||+++++.++++..+++++++|++||.|+||+||++|+-.+++....... ....++..++.++.+|+++|.|+||.
T Consensus 84 ~Efi~als~~~rGt~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~ 163 (193)
T KOG0044|consen 84 LEFICALSLTSRGTLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGK 163 (193)
T ss_pred HHHHHHHHHHcCCcHHHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCCc
Confidence 999999999999999999999999999999999999999999975433222 11235668899999999999999999
Q ss_pred eeHHHHHHHHHcCC
Q 042007 235 IEMWQLEILLRGMV 248 (844)
Q Consensus 235 It~~EF~~ll~~~~ 248 (844)
||++||.......|
T Consensus 164 lT~eef~~~~~~d~ 177 (193)
T KOG0044|consen 164 LTLEEFIEGCKADP 177 (193)
T ss_pred ccHHHHHHHhhhCH
Confidence 99999999998765
No 73
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=99.77 E-value=1.1e-17 Score=207.51 Aligned_cols=199 Identities=15% Similarity=0.276 Sum_probs=145.2
Q ss_pred EEEEEEEecCCEEEEEEeCCC-CCccCCCcEEEEEcCCCCCCCccCcccccCC-CCCceEEEEEecCCchHHHHHHHHhh
Q 042007 533 EVIKAVIYTGNVLALYMTKPP-GFKYQSGMYLFVKCPDLSPFEWHPFSITSAP-GDYYLSVHIRTLGDWTTELKQRFEKV 610 (844)
Q Consensus 533 ~i~~v~~~~~~v~~l~i~~p~-~~~~~pGQyv~l~~p~~s~~e~HPFTI~s~p-~~~~l~l~Ir~~G~~T~~L~~~~~~~ 610 (844)
+|++.+.+..++..+++..|. ...++|||||.|+++..+ +.+||||++.+ +++.++|.||..|..|+.|.+.+
T Consensus 3 ~I~~~~~l~~~~~~l~l~ap~~a~~~~PGQFV~l~~~~~~--errplSIa~~~~~~g~i~l~vk~vG~~T~~L~~~l--- 77 (1006)
T PRK12775 3 SIVRREAFSDTTFLWEVEAPDVAASAEPGHFVMLRLYEGA--ERIPLTVADFDRKKGTITMVVQALGKTTREMMTKF--- 77 (1006)
T ss_pred EEEEEEEecCCEEEEEEecCCcccCCCCCeeEEEEeCCCC--eeEEEEecCcCCCCCEEEEEEEecCcHHHHHHhcC---
Confidence 577888899999999998876 457999999999987532 57999999876 46789999999999999986543
Q ss_pred cCCCCCCCCCCCcchhhhhhhhhccccccccccCcCEE-EEeCccCCCCCCCCCCCeEEEEEcccchhchHHHHHHHHHH
Q 042007 611 CEAPAPAKPNRGNLMRMETKSAANNANFEQIQASFPKI-LIKGPYGAPAQDYKNYDILLLIGLGIGATPFISIIKDLLNH 689 (844)
Q Consensus 611 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~IdGPyG~~~~~~~~~~~vvlVagGiGITp~lsil~~l~~~ 689 (844)
++| ..+ .+.||+|.+.. ...++++|||||||||||++|+++.+...
T Consensus 78 -------k~G-------------------------d~l~~v~GPlG~~~~-~~~~~~vllVaGGiGIAPl~s~~r~l~~~ 124 (1006)
T PRK12775 78 -------KAG-------------------------DTFEDFVGPLGLPQH-IDKAGHVVLVGGGLGVAPVYPQLRAFKEA 124 (1006)
T ss_pred -------CCC-------------------------CEEeeeecCCCCCCC-CCCCCeEEEEEEhHHHHHHHHHHHHHHhC
Confidence 456 566 79999998764 34567999999999999999999987543
Q ss_pred hhhcCcchhhhcCCCCCCCcEEEEEEEeCCCChhhhHHHHHHHHhccCCCCeEEEEEEEecccCCCChhHHHHHHHHHhh
Q 042007 690 IKSHERDTEFLENGFKKGPERAYFYWVTREQGSFEWFKGVMDDIADHDDKNVIEMHNYLTSVYEEGDARSALIAMVQKLQ 769 (844)
Q Consensus 690 ~~~~~~~~~~~~~~~~~~~~~v~l~W~~R~~~~~~wf~~~L~~l~~~~~~~~l~i~~ylT~~~~~~d~~~~~~~~~~~~~ 769 (844)
..+++++|+.|+.+.+ .+.++|.++.. . ++++.. |. +
T Consensus 125 ------------------g~~v~li~g~R~~~~l-~~~del~~~~~-----~----~~v~td----dg-s---------- 161 (1006)
T PRK12775 125 ------------------GARTTGIIGFRNKDLV-FWEDKFGKYCD-----D----LIVCTD----DG-S---------- 161 (1006)
T ss_pred ------------------CCcEEEEEeCCChHHc-ccHHHHHhhcC-----c----EEEEEC----CC-C----------
Confidence 2469999999999876 56666655432 1 233321 10 0
Q ss_pred hhcCCccccccCcccccccCC-ChHHHHHHHHhhCCCCcEEEEEeCChhHHHHHHHHHHhhcC
Q 042007 770 HAKNGVDIVSESRIKTHFARP-NWRKVFGQLATDHESSRIGVFYCGSATLTKTLKELCLEFSL 831 (844)
Q Consensus 770 ~~~~~~d~~sg~~~~~~~gRP-d~~~v~~~~~~~~~~~~v~V~~CGP~~m~~~vr~~~~~~~~ 831 (844)
+|+. ...+.+.++..... .-.||+|||++|++.+.+.++.++-
T Consensus 162 -----------------~G~~G~vt~~l~~~l~~~~--~d~vy~CGP~~Mm~av~~~~~~~gi 205 (1006)
T PRK12775 162 -----------------YGKPGFVTAALKEVCEKDK--PDLVVAIGPLPMMNACVETTRPFGV 205 (1006)
T ss_pred -----------------CCCCCChHHHHHHHhccCC--CCEEEEECCHHHHHHHHHHHHHCCC
Confidence 0111 12234444432211 1259999999999999998877643
No 74
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=99.70 E-value=9.8e-18 Score=144.21 Aligned_cols=99 Identities=43% Similarity=0.900 Sum_probs=74.6
Q ss_pred cccCCCchhhhhhhhhhhhhhccCCCchHHHHHHHHHHHcccCCCCcCHHHHhhccCCCCCHHHHHHHHHHHhcccCCCC
Q 042007 72 KMDRTASSAARGLQSLRFLDRTVTGKENDAWRSIERRFQQFAVSGRLPKDKFGICVGMGESTEFSVGVFEALARRRKVNT 151 (844)
Q Consensus 72 ~~~~~~s~a~~~l~~l~~i~~~~~~~~~~~~~~l~~~F~~ld~dG~is~~eF~~~lg~~~~~~~~~~lf~~l~~~~~~d~ 151 (844)
+++|++|+|..||++|+||++ ++.+.++|.+|+++|+++..||.|++++|.+|+||+++++|+.++|++|.+++++..
T Consensus 1 rldRt~S~A~~ALkGLrFIsk--t~~~~~~W~~VE~RFd~La~dG~L~rs~Fg~CIGM~dSkeFA~eLFdALaRrr~i~~ 78 (100)
T PF08414_consen 1 RLDRTKSGAQRALKGLRFISK--TTGGADGWKEVEKRFDKLAKDGLLPRSDFGECIGMKDSKEFAGELFDALARRRGIKG 78 (100)
T ss_dssp -----HHHHHHHHHHHHHHHH--HH-----HHHHHHHHHHH-BTTBEEGGGHHHHHT--S-HHHHHHHHHHHHHHTT--S
T ss_pred CCCcchhHHHHHHhcccceec--CCCCccCHHHHHHHHHHhCcCCcccHHHHHHhcCCcccHHHHHHHHHHHHHhcCCcc
Confidence 478999999999999999999 433455899999999999999999999999999999999999999999999998775
Q ss_pred CCceeHHHHHHHHHHhccCChH
Q 042007 152 ENGITKEEVRMFWEDMTKKDLD 173 (844)
Q Consensus 152 dG~I~f~EF~~~l~~~~~~~~~ 173 (844)
++ |+.+|+.++|.++.+++++
T Consensus 79 ~~-I~k~eL~efW~qisD~sFD 99 (100)
T PF08414_consen 79 DS-ITKDELKEFWEQISDQSFD 99 (100)
T ss_dssp SE-E-HHHHHHHHHHHH---HH
T ss_pred CC-cCHHHHHHHHHHhhccCCC
Confidence 55 9999999999999988754
No 75
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.70 E-value=1.8e-16 Score=154.94 Aligned_cols=134 Identities=18% Similarity=0.353 Sum_probs=107.5
Q ss_pred HHHHHHHHHHccc--CCCCcCHHHHhhcc---CCCCCHHHHHHHHHHHhcccCCCCCCceeHHHHHHHHHHhccC-C---
Q 042007 101 AWRSIERRFQQFA--VSGRLPKDKFGICV---GMGESTEFSVGVFEALARRRKVNTENGITKEEVRMFWEDMTKK-D--- 171 (844)
Q Consensus 101 ~~~~l~~~F~~ld--~dG~is~~eF~~~l---g~~~~~~~~~~lf~~l~~~~~~d~dG~I~f~EF~~~l~~~~~~-~--- 171 (844)
+..++.+.|+.+| ++|+|+.+||..++ |...++.....+++.++ .|+||.|+|+||+.++...... .
T Consensus 6 ~~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D----~dg~g~I~~~eF~~l~~~~~~~~~~~~ 81 (151)
T KOG0027|consen 6 QILELKEAFQLFDKDGDGKISVEELGAVLRSLGQNPTEEELRDLIKEID----LDGDGTIDFEEFLDLMEKLGEEKTDEE 81 (151)
T ss_pred HHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhC----CCCCCeEcHHHHHHHHHhhhccccccc
Confidence 4455555555555 89999999999998 55555555666666555 6889999999999999865432 2
Q ss_pred -hHHHHHHHHHHhccCCCCcccHHHHHHHHHhhhccccccccccchHHHHHHHHHHhCCCCCCceeHHHHHHHHHc
Q 042007 172 -LDARLQIFFDMCDKNGDGILTEDEVREVIVLSASENKLSNLKENSSTYAALIMEKLDPDCKGYIEMWQLEILLRG 246 (844)
Q Consensus 172 -~~~~l~~~F~~fD~d~dG~It~eEl~~il~~~~~~~~l~~~~~~~~e~~~~if~~~D~d~dG~It~~EF~~ll~~ 246 (844)
..+.++.+|++||+|+||+||.+||+.++...+. +...+.++.|++++|.|+||.|+|+||.++|..
T Consensus 82 ~~~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~--------~~~~~e~~~mi~~~d~d~dg~i~f~ef~~~m~~ 149 (151)
T KOG0027|consen 82 ASSEELKEAFRVFDKDGDGFISASELKKVLTSLGE--------KLTDEECKEMIREVDVDGDGKVNFEEFVKMMSG 149 (151)
T ss_pred ccHHHHHHHHHHHccCCCCcCcHHHHHHHHHHhCC--------cCCHHHHHHHHHhcCCCCCCeEeHHHHHHHHhc
Confidence 3569999999999999999999999999976543 233788999999999999999999999999964
No 76
>cd06206 bifunctional_CYPOR These bifunctional proteins fuse N-terminal cytochrome p450 with a cytochrome p450 reductase (CYPOR). NADPH cytochrome p450 reductase serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a la
Probab=99.63 E-value=2.7e-15 Score=169.02 Aligned_cols=190 Identities=14% Similarity=0.220 Sum_probs=124.2
Q ss_pred CCCcEEEEEcCCCCCCCccCcccccCCC--CCceEEEEEe------------cCCchHHHHHHHHhhcCCCCCCCCCCCc
Q 042007 558 QSGMYLFVKCPDLSPFEWHPFSITSAPG--DYYLSVHIRT------------LGDWTTELKQRFEKVCEAPAPAKPNRGN 623 (844)
Q Consensus 558 ~pGQyv~l~~p~~s~~e~HPFTI~s~p~--~~~l~l~Ir~------------~G~~T~~L~~~~~~~~~~~~~~~~g~~~ 623 (844)
..||++-+. |. .+.|||||+|+|. ++.+.+.|+. .|..|..|.++ ++|.
T Consensus 148 ~~~~~l~~~-p~---l~~R~YSIaSsp~~~~~~i~l~v~v~~~~~~~~~~~~~G~~S~~L~~l-----------~~Gd-- 210 (384)
T cd06206 148 PLATFLAML-PP---MRPRQYSISSSPLVDPGHATLTVSVLDAPALSGQGRYRGVASSYLSSL-----------RPGD-- 210 (384)
T ss_pred CHHHHHHhC-cc---cCCcceeeccCccCCCCeEEEEEEEEEeecCCCCceeeeehHHHHhhC-----------CCCC--
Confidence 458887775 54 3789999999985 3556666554 46788888653 3552
Q ss_pred chhhhhhhhhccccccccccCcCEEEEeCccCCCCCCCCCCCeEEEEEcccchhchHHHHHHHHHHhhhcCcchhhhcCC
Q 042007 624 LMRMETKSAANNANFEQIQASFPKILIKGPYGAPAQDYKNYDILLLIGLGIGATPFISIIKDLLNHIKSHERDTEFLENG 703 (844)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~~~~~~~v~IdGPyG~~~~~~~~~~~vvlVagGiGITp~lsil~~l~~~~~~~~~~~~~~~~~ 703 (844)
...+.+.||+|.+..+......+||||||+||||++|++++.......+.
T Consensus 211 ---------------------~v~v~i~~p~g~F~l~~~~~~piImIa~GtGIAP~~s~l~~~~~~~~~~~--------- 260 (384)
T cd06206 211 ---------------------SIHVSVRPSHSAFRPPSDPSTPLIMIAAGTGLAPFRGFLQERAALLAQGR--------- 260 (384)
T ss_pred ---------------------eEEEEEecCCCccCCCCCCCCCEEEEeCCCCcHHHHHHHHHHHHHHhcCC---------
Confidence 13455779999886544456789999999999999999998865422111
Q ss_pred CCCCCcEEEEEEEeCCC-ChhhhHHHHHHHHhccCCCCeEEEEEEEecccCCCChhHHHHHHHHHhhhhcCCccccccCc
Q 042007 704 FKKGPERAYFYWVTREQ-GSFEWFKGVMDDIADHDDKNVIEMHNYLTSVYEEGDARSALIAMVQKLQHAKNGVDIVSESR 782 (844)
Q Consensus 704 ~~~~~~~v~l~W~~R~~-~~~~wf~~~L~~l~~~~~~~~l~i~~ylT~~~~~~d~~~~~~~~~~~~~~~~~~~d~~sg~~ 782 (844)
...++.|+|++|+. +++ .|.++|.++++. +.++++..+++..+.... .+.+
T Consensus 261 ---~~~~v~L~~G~R~~~~d~-ly~~el~~~~~~---~~~~l~~a~Sr~~~~~~~-------------------yVq~-- 312 (384)
T cd06206 261 ---KLAPALLFFGCRHPDHDD-LYRDELEEWEAA---GVVSVRRAYSRPPGGGCR-------------------YVQD-- 312 (384)
T ss_pred ---CcCCEEEEEeCCCCCccc-chHHHHHHHHHC---CCeEEEEEecccCCCCCE-------------------echh--
Confidence 23579999999998 565 788999888763 356776666653211000 0000
Q ss_pred ccccccCCChHHHHHHHHhhCCCCcEEEEEeCChhHHHHHHHHHHhhcC
Q 042007 783 IKTHFARPNWRKVFGQLATDHESSRIGVFYCGSATLTKTLKELCLEFSL 831 (844)
Q Consensus 783 ~~~~~gRPd~~~v~~~~~~~~~~~~v~V~~CGP~~m~~~vr~~~~~~~~ 831 (844)
.=+-+.+++.+ ... +...||+|||++|+++|++++.+...
T Consensus 313 ----~i~~~~~~~~~-~~~----~~~~vyiCGp~~M~~~v~~~L~~i~~ 352 (384)
T cd06206 313 ----RLWAEREEVWE-LWE----QGARVYVCGDGRMAPGVREVLKRIYA 352 (384)
T ss_pred ----hHHhhHHHHHH-HHH----CCcEEEEECCCchHHHHHHHHHHHHH
Confidence 00001112211 111 13469999999999999999887543
No 77
>cd06199 SiR Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain.
Probab=99.63 E-value=2.6e-15 Score=167.50 Aligned_cols=188 Identities=14% Similarity=0.228 Sum_probs=126.2
Q ss_pred CCccCCCcEEEEEcCCCCCCCccCcccccCCCC--CceEEEEEec----------CCchHHHHHHHHhhcCCCCCCCCCC
Q 042007 554 GFKYQSGMYLFVKCPDLSPFEWHPFSITSAPGD--YYLSVHIRTL----------GDWTTELKQRFEKVCEAPAPAKPNR 621 (844)
Q Consensus 554 ~~~~~pGQyv~l~~p~~s~~e~HPFTI~s~p~~--~~l~l~Ir~~----------G~~T~~L~~~~~~~~~~~~~~~~g~ 621 (844)
..++.||||+.+..| .+.++|||+|+|.. +.+.++|+.. |-.|..|.+.. ++|
T Consensus 129 ~~~~~~gq~l~l~~~----~~~R~YSIaSsp~~~~~~i~l~v~~v~~~~~~~~~~G~~S~~L~~~~----------~~G- 193 (360)
T cd06199 129 PARLTAEELLDLLRP----LQPRLYSIASSPKAVPDEVHLTVAVVRYESHGRERKGVASTFLADRL----------KEG- 193 (360)
T ss_pred CCCCCHHHHHHhCcC----CCCcceeeccCcccCCCeEEEEEEEeeecCCCCccceehhHHHHhcC----------CCC-
Confidence 457889999998744 26799999999963 6799998854 77888887653 245
Q ss_pred CcchhhhhhhhhccccccccccCcCEEEEeCcc-CCCCCCCCCCCeEEEEEcccchhchHHHHHHHHHHhhhcCcchhhh
Q 042007 622 GNLMRMETKSAANNANFEQIQASFPKILIKGPY-GAPAQDYKNYDILLLIGLGIGATPFISIIKDLLNHIKSHERDTEFL 700 (844)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~IdGPy-G~~~~~~~~~~~vvlVagGiGITp~lsil~~l~~~~~~~~~~~~~~ 700 (844)
.+|.|.||. |.+..+......+||||||+||||++|++++.+...
T Consensus 194 ------------------------d~v~v~~~~~~~F~lp~~~~~piImIa~GtGIAP~~s~l~~~~~~~---------- 239 (360)
T cd06199 194 ------------------------DTVPVFVQPNPHFRLPEDPDAPIIMVGPGTGIAPFRAFLQEREATG---------- 239 (360)
T ss_pred ------------------------CEEEEEEecCCCcCCCCCCCCCEEEEecCcChHHHHHHHHHHHhcc----------
Confidence 578888755 456543334578999999999999999999876532
Q ss_pred cCCCCCCCcEEEEEEEeCCC-ChhhhHHHHHHHHhccCCCCeEEEEEEEecccCCCChhHHHHHHHHHhhhhcCCccccc
Q 042007 701 ENGFKKGPERAYFYWVTREQ-GSFEWFKGVMDDIADHDDKNVIEMHNYLTSVYEEGDARSALIAMVQKLQHAKNGVDIVS 779 (844)
Q Consensus 701 ~~~~~~~~~~v~l~W~~R~~-~~~~wf~~~L~~l~~~~~~~~l~i~~ylT~~~~~~d~~~~~~~~~~~~~~~~~~~d~~s 779 (844)
...++.++|++|+. .++ .|.++|+++++.. ..++++...++..+. .. ..|..-
T Consensus 240 ------~~~~~~L~~G~R~~~~D~-~y~~el~~~~~~~--~~~~~~~a~Sr~~~~---~~----yVq~~l---------- 293 (360)
T cd06199 240 ------AKGKNWLFFGERHFATDF-LYQDELQQWLKDG--VLTRLDTAFSRDQAE---KV----YVQDRM---------- 293 (360)
T ss_pred ------CCCcEEEEEcCCCCccch-hHHHHHHHHHHcC--CCeEEEEEEccCCCC---Cc----cHHHHH----------
Confidence 23578999999997 565 7889999887642 345566555553211 00 000000
Q ss_pred cCcccccccCCChHHHHHHHHhhCCCCcEEEEEeCCh-hHHHHHHHHHHhhc
Q 042007 780 ESRIKTHFARPNWRKVFGQLATDHESSRIGVFYCGSA-TLTKTLKELCLEFS 830 (844)
Q Consensus 780 g~~~~~~~gRPd~~~v~~~~~~~~~~~~v~V~~CGP~-~m~~~vr~~~~~~~ 830 (844)
+-+..++.. ... +...||+|||+ .|+++|++++.+.-
T Consensus 294 ---------~~~~~~~~~-~~~----~~~~vYvCG~~~~M~~~V~~~L~~i~ 331 (360)
T cd06199 294 ---------REQGAELWA-WLE----EGAHFYVCGDAKRMAKDVDAALLDII 331 (360)
T ss_pred ---------HHhHHHHHH-HHh----CCCEEEEECCCccccHHHHHHHHHHH
Confidence 000111111 111 12469999999 89999999987743
No 78
>cd06207 CyPoR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced fe
Probab=99.62 E-value=6.8e-15 Score=165.68 Aligned_cols=179 Identities=14% Similarity=0.210 Sum_probs=120.6
Q ss_pred CCCccCcccccCCC--CCceEEEEEec-----------CCchHHHHHHHHhhcCCCCCCCCCCCcchhhhhhhhhccccc
Q 042007 572 PFEWHPFSITSAPG--DYYLSVHIRTL-----------GDWTTELKQRFEKVCEAPAPAKPNRGNLMRMETKSAANNANF 638 (844)
Q Consensus 572 ~~e~HPFTI~s~p~--~~~l~l~Ir~~-----------G~~T~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 638 (844)
..+.+||||+|+|. .+.++|+|+.. |-.|..|.++ ++|
T Consensus 161 ~l~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l-----------~~G------------------ 211 (382)
T cd06207 161 LIKPRYYSISSSPLKNPNEVHLLVSLVSWKTPSGRSRYGLCSSYLAGL-----------KVG------------------ 211 (382)
T ss_pred CCCCceeeecCCCcCCCCeEEEEEEEEEeeCCCCCeecccHHHHHhhc-----------CCC------------------
Confidence 35889999999996 47899999865 6677777643 345
Q ss_pred cccccCcCEEEEeCccCCCCCCCCCCCeEEEEEcccchhchHHHHHHHHHHhhhcCcchhhhcCCCCCCCcEEEEEEEeC
Q 042007 639 EQIQASFPKILIKGPYGAPAQDYKNYDILLLIGLGIGATPFISIIKDLLNHIKSHERDTEFLENGFKKGPERAYFYWVTR 718 (844)
Q Consensus 639 ~~~~~~~~~v~IdGPyG~~~~~~~~~~~vvlVagGiGITp~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~~v~l~W~~R 718 (844)
.+|.|.||+|.+..+......+||||||+||||++|++++.....+.+. ...++.|+|++|
T Consensus 212 -------d~v~v~~p~g~F~lp~~~~~plImIa~GtGIAP~rs~l~~~~~~~~~~~------------~~~~~~L~~G~R 272 (382)
T cd06207 212 -------QRVTVFIKKSSFKLPKDPKKPIIMVGPGTGLAPFRAFLQERAALLAQGP------------EIGPVLLYFGCR 272 (382)
T ss_pred -------CEEEEEEECCcccCCCCCCCCEEEEcCCccHHHHHHHHHHHHHHhhcCc------------cCCCEEEEECCC
Confidence 5799999999876433335689999999999999999998765422211 356899999999
Q ss_pred CC-ChhhhHHHHHHHHhccCCCCeEEEEEEEecccCCCChhHHHHHHHHHhhhhcCCccccccCcccccccCCChHHHHH
Q 042007 719 EQ-GSFEWFKGVMDDIADHDDKNVIEMHNYLTSVYEEGDARSALIAMVQKLQHAKNGVDIVSESRIKTHFARPNWRKVFG 797 (844)
Q Consensus 719 ~~-~~~~wf~~~L~~l~~~~~~~~l~i~~ylT~~~~~~d~~~~~~~~~~~~~~~~~~~d~~sg~~~~~~~gRPd~~~v~~ 797 (844)
+. .++ .|.+++.++++.. ..++++...++.... .. .+ .+..+-+.+.+.+
T Consensus 273 ~~~~d~-~y~~el~~~~~~~--~~~~~~~a~Srd~~~---~~-----------------yV------q~~l~~~~~~~~~ 323 (382)
T cd06207 273 HEDKDY-LYKEELEEYEKSG--VLTTLGTAFSRDQPK---KV-----------------YV------QDLIRENSDLVYQ 323 (382)
T ss_pred CCCccc-cHHHHHHHHHhCC--CCceEEEEecCCCCC---ce-----------------Eh------HHHHHHCHHHHHH
Confidence 98 665 7889998887642 345566555542210 00 00 0001111122222
Q ss_pred HHHhhCCCCcEEEEEeCChh-HHHHHHHHHHhhcC
Q 042007 798 QLATDHESSRIGVFYCGSAT-LTKTLKELCLEFSL 831 (844)
Q Consensus 798 ~~~~~~~~~~v~V~~CGP~~-m~~~vr~~~~~~~~ 831 (844)
.+ . .+...||+|||++ |+++|++++.+...
T Consensus 324 ~l-~---~~~~~vYvCG~~~~M~~~V~~~L~~~~~ 354 (382)
T cd06207 324 LL-E---EGAGVIYVCGSTWKMPPDVQEAFEEILK 354 (382)
T ss_pred HH-h---cCCCEEEEECCcccccHHHHHHHHHHHH
Confidence 11 1 1123699999998 99999999887543
No 79
>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]
Probab=99.61 E-value=9.1e-15 Score=148.21 Aligned_cols=230 Identities=18% Similarity=0.324 Sum_probs=150.9
Q ss_pred ccEEEEEEEEecCCEEEEEEeCCC--CCccCCCcEEEEEcCCCC----CC----C---------------------ccCc
Q 042007 530 HKVEVIKAVIYTGNVLALYMTKPP--GFKYQSGMYLFVKCPDLS----PF----E---------------------WHPF 578 (844)
Q Consensus 530 ~~~~i~~v~~~~~~v~~l~i~~p~--~~~~~pGQyv~l~~p~~s----~~----e---------------------~HPF 578 (844)
..++|.+......-+.+|.+..|+ ...++||.|+.|.+|.-. -| | .+.|
T Consensus 135 WectViSNdN~ATFIKEL~laip~g~~vpFraGGyiQie~pph~v~y~Dfdi~~eY~~DWdkf~lf~~vs~v~e~~~rAY 214 (410)
T COG2871 135 WECTVISNDNKATFIKELKLAIPEGEEVPFRAGGYIQIEAPPHTVNYKDFDIPPEYHEDWDKFNLFRYVSKVDEPIIRAY 214 (410)
T ss_pred eeEEEEeCCchhhhhhhheeeCCCCCccccCCCceEEEecCCccccccccCCChhHhcchhhhchheeeccccHHHHHHh
Confidence 344454433333335566666665 568999999999998531 01 1 1357
Q ss_pred ccccCCCC-CceEEEEEecCC-chHHHHHHHHhhcCCCCCCCCCCCcchhhhhhhhhccccccccccCcCEEEEeCccCC
Q 042007 579 SITSAPGD-YYLSVHIRTLGD-WTTELKQRFEKVCEAPAPAKPNRGNLMRMETKSAANNANFEQIQASFPKILIKGPYGA 656 (844)
Q Consensus 579 TI~s~p~~-~~l~l~Ir~~G~-~T~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IdGPyG~ 656 (844)
|++|-|++ +.+.+.||..-. ... + ..++|+-. +.-....+-++|.|.||||.
T Consensus 215 SmAsYPeE~giI~~NvRIAtPPp~~-----------~--~~PpG~mS-------------Syi~sLKpGDKvtisGPfGE 268 (410)
T COG2871 215 SMASYPEEKGIIKLNVRIATPPPRN-----------P--DAPPGQMS-------------SYIWSLKPGDKVTISGPFGE 268 (410)
T ss_pred hhhcChhhcCeEEEEEEeccCCCCC-----------C--CCCcccee-------------eeEEeecCCCeEEEeccchh
Confidence 88888865 556777776410 000 0 00122100 00001112379999999998
Q ss_pred CCCCCCCCCeEEEEEcccchhchHHHHHHHHHHhhhcCcchhhhcCCCCCCCcEEEEEEEeCCCChhhhHHHHHHHHhcc
Q 042007 657 PAQDYKNYDILLLIGLGIGATPFISIIKDLLNHIKSHERDTEFLENGFKKGPERAYFYWVTREQGSFEWFKGVMDDIADH 736 (844)
Q Consensus 657 ~~~~~~~~~~vvlVagGiGITp~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~~v~l~W~~R~~~~~~wf~~~L~~l~~~ 736 (844)
+.. -.....+|+|+||.|.+|+.|.+-|++.+.+ ..|++.|.+..|+..+. .+.++.++|+..
T Consensus 269 fFa-KdtdaemvFigGGAGmapmRSHIfDqL~rlh---------------SkRkis~WYGARS~rE~-fY~Ed~d~L~ae 331 (410)
T COG2871 269 FFA-KDTDAEMVFIGGGAGMAPMRSHIFDQLKRLH---------------SKRKISFWYGARSLREM-FYQEDFDQLQAE 331 (410)
T ss_pred hhh-ccCCCceEEEecCcCcCchHHHHHHHHHhhc---------------ccceeeeeeccchHHHh-HHHHHHHHHHhh
Confidence 764 2344679999999999999999999988754 46899999999999986 788888888765
Q ss_pred CCCCeEEEEEEEecccCCCChhHHHHHHHHHhhhhcCCccccccCcccccccCCChHHHHHHHHhhCCC-CcEEEEEeCC
Q 042007 737 DDKNVIEMHNYLTSVYEEGDARSALIAMVQKLQHAKNGVDIVSESRIKTHFARPNWRKVFGQLATDHES-SRIGVFYCGS 815 (844)
Q Consensus 737 ~~~~~l~i~~ylT~~~~~~d~~~~~~~~~~~~~~~~~~~d~~sg~~~~~~~gRPd~~~v~~~~~~~~~~-~~v~V~~CGP 815 (844)
.+++.-|+-++.+.+++.... .+|. +| ..+.....+.|+. ++...|+|||
T Consensus 332 --~pNF~wH~aLSdplpEDnW~g------------------~TgF---ih------nv~~en~Lk~h~aPEDceyYmCGP 382 (410)
T COG2871 332 --NPNFHWHLALSDPLPEDNWDG------------------YTGF---IH------NVLYENYLKDHEAPEDCEYYMCGP 382 (410)
T ss_pred --CCCcEEEEEecCCCCcCCccc------------------chhH---HH------HHHHhhhhhcCCCchheeEEeeCc
Confidence 357888888888766643210 1111 01 2233334455554 6789999999
Q ss_pred hhHHHHHHHHHHhhcC
Q 042007 816 ATLTKTLKELCLEFSL 831 (844)
Q Consensus 816 ~~m~~~vr~~~~~~~~ 831 (844)
|-|..+|-+...+++-
T Consensus 383 p~mNasvikmL~dlGV 398 (410)
T COG2871 383 PLMNASVIKMLKDLGV 398 (410)
T ss_pred chhhHHHHHHHHhcCc
Confidence 9999999999998864
No 80
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.57 E-value=3.4e-14 Score=132.94 Aligned_cols=136 Identities=16% Similarity=0.308 Sum_probs=108.7
Q ss_pred HHHHHHHHHHHccc--CCCCcCHHHHhhcc---CCCCCHHHHHHHHHHHhcccCCCCCCceeHHHHHHHHHH-hccCChH
Q 042007 100 DAWRSIERRFQQFA--VSGRLPKDKFGICV---GMGESTEFSVGVFEALARRRKVNTENGITKEEVRMFWED-MTKKDLD 173 (844)
Q Consensus 100 ~~~~~l~~~F~~ld--~dG~is~~eF~~~l---g~~~~~~~~~~lf~~l~~~~~~d~dG~I~f~EF~~~l~~-~~~~~~~ 173 (844)
++-++++..|+.++ ++|+|+.+||..++ |....+. ++-+++.+.|. ++.|.|+|++|...+.. +...++.
T Consensus 30 ~q~q~i~e~f~lfd~~~~g~iD~~EL~vAmralGFE~~k~---ei~kll~d~dk-~~~g~i~fe~f~~~mt~k~~e~dt~ 105 (172)
T KOG0028|consen 30 EQKQEIKEAFELFDPDMAGKIDVEELKVAMRALGFEPKKE---EILKLLADVDK-EGSGKITFEDFRRVMTVKLGERDTK 105 (172)
T ss_pred HHHhhHHHHHHhhccCCCCcccHHHHHHHHHHcCCCcchH---HHHHHHHhhhh-ccCceechHHHHHHHHHHHhccCcH
Confidence 34455566666555 89999999996554 6655544 55555666553 88999999999999864 5677799
Q ss_pred HHHHHHHHHhccCCCCcccHHHHHHHHHhhhccccccccccchHHHHHHHHHHhCCCCCCceeHHHHHHHHHcC
Q 042007 174 ARLQIFFDMCDKNGDGILTEDEVREVIVLSASENKLSNLKENSSTYAALIMEKLDPDCKGYIEMWQLEILLRGM 247 (844)
Q Consensus 174 ~~l~~~F~~fD~d~dG~It~eEl~~il~~~~~~~~l~~~~~~~~e~~~~if~~~D~d~dG~It~~EF~~ll~~~ 247 (844)
++++.+|+++|.|++|+|+..+|+.+.+.+. +...++.+..|++++|.|+||.|+-+||..+|+..
T Consensus 106 eEi~~afrl~D~D~~Gkis~~~lkrvakeLg--------enltD~El~eMIeEAd~d~dgevneeEF~~imk~t 171 (172)
T KOG0028|consen 106 EEIKKAFRLFDDDKTGKISQRNLKRVAKELG--------ENLTDEELMEMIEEADRDGDGEVNEEEFIRIMKKT 171 (172)
T ss_pred HHHHHHHHcccccCCCCcCHHHHHHHHHHhC--------ccccHHHHHHHHHHhcccccccccHHHHHHHHhcC
Confidence 9999999999999999999999999997543 23357788999999999999999999999999753
No 81
>TIGR01931 cysJ sulfite reductase [NADPH] flavoprotein, alpha-component. This model describes an NADPH-dependent sulfite reductase flavoprotein subunit. Most members of this family are found in Cys biosynthesis gene clusters. The closest homologs below the trusted cutoff are designated as subunits nitrate reductase.
Probab=99.57 E-value=1.3e-14 Score=171.47 Aligned_cols=126 Identities=12% Similarity=0.201 Sum_probs=97.4
Q ss_pred CccCCCcEEEEEcCCCCCCCccCcccccCCC--CCceEEEEEec----------CCchHHHHHHHHhhcCCCCCCCCCCC
Q 042007 555 FKYQSGMYLFVKCPDLSPFEWHPFSITSAPG--DYYLSVHIRTL----------GDWTTELKQRFEKVCEAPAPAKPNRG 622 (844)
Q Consensus 555 ~~~~pGQyv~l~~p~~s~~e~HPFTI~s~p~--~~~l~l~Ir~~----------G~~T~~L~~~~~~~~~~~~~~~~g~~ 622 (844)
+++.||||+.+..| .+.|||||+|+|. ++.+.|+|+.. |..|..|.+.+ ++|
T Consensus 367 ~~~~~gq~v~ll~~----~~~R~YSIaSsp~~~~~~l~ltV~~v~~~~~~~~~~G~~S~~L~~~l----------~~G-- 430 (597)
T TIGR01931 367 ADLDAEQLISLLRP----LTPRLYSISSSQSEVGDEVHLTVGVVRYQAHGRARLGGASGFLAERL----------KEG-- 430 (597)
T ss_pred CCCCHHHHHHhCcc----cCCceeeeccCcccCCCEEEEEEEEEEecCCCCccccchhHHHHhhC----------CCC--
Confidence 57899999998875 3789999999995 46899999864 88999998743 355
Q ss_pred cchhhhhhhhhccccccccccCcCEEEEeCccC-CCCCCCCCCCeEEEEEcccchhchHHHHHHHHHHhhhcCcchhhhc
Q 042007 623 NLMRMETKSAANNANFEQIQASFPKILIKGPYG-APAQDYKNYDILLLIGLGIGATPFISIIKDLLNHIKSHERDTEFLE 701 (844)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~~~~~v~IdGPyG-~~~~~~~~~~~vvlVagGiGITp~lsil~~l~~~~~~~~~~~~~~~ 701 (844)
.+|.|.||.| .+..+-.....+||||||+||||++|+++++....
T Consensus 431 -----------------------d~v~v~~~~~~~F~lp~~~~~piImIg~GTGIAPfrsflq~r~~~~----------- 476 (597)
T TIGR01931 431 -----------------------DTVPVYIEPNDNFRLPEDPDTPIIMIGPGTGVAPFRAFMQERAEDG----------- 476 (597)
T ss_pred -----------------------CEEEEEEeeCCcccCCCCCCCCEEEEcCCcCchhHHHHHHHHHHcc-----------
Confidence 5788887654 55443333468999999999999999999876542
Q ss_pred CCCCCCCcEEEEEEEeCC-CChhhhHHHHHHHHhcc
Q 042007 702 NGFKKGPERAYFYWVTRE-QGSFEWFKGVMDDIADH 736 (844)
Q Consensus 702 ~~~~~~~~~v~l~W~~R~-~~~~~wf~~~L~~l~~~ 736 (844)
...+++|+|++|+ ..++ .|.++|+++.+.
T Consensus 477 -----~~g~~~LffG~R~~~~D~-ly~~El~~~~~~ 506 (597)
T TIGR01931 477 -----AKGKNWLFFGNPHFTTDF-LYQVEWQNYLKK 506 (597)
T ss_pred -----CCCCEEEEECCCCCCcch-hHHHHHHHHHHc
Confidence 2457999999998 5565 678888877654
No 82
>PTZ00183 centrin; Provisional
Probab=99.57 E-value=5.3e-14 Score=138.23 Aligned_cols=138 Identities=14% Similarity=0.207 Sum_probs=113.0
Q ss_pred hHHHHHHHHHHHccc--CCCCcCHHHHhhcc---CCCCCHHHHHHHHHHHhcccCCCCCCceeHHHHHHHHHHh-ccCCh
Q 042007 99 NDAWRSIERRFQQFA--VSGRLPKDKFGICV---GMGESTEFSVGVFEALARRRKVNTENGITKEEVRMFWEDM-TKKDL 172 (844)
Q Consensus 99 ~~~~~~l~~~F~~ld--~dG~is~~eF~~~l---g~~~~~~~~~~lf~~l~~~~~~d~dG~I~f~EF~~~l~~~-~~~~~ 172 (844)
.++..++.+.|..+| ++|.|+.+||..++ |.......+..+|..++ .+++|.|+++||..++... .....
T Consensus 13 ~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d----~~~~g~i~~~eF~~~~~~~~~~~~~ 88 (158)
T PTZ00183 13 EDQKKEIREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVD----KDGSGKIDFEEFLDIMTKKLGERDP 88 (158)
T ss_pred HHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhC----CCCCCcEeHHHHHHHHHHHhcCCCc
Confidence 456777888888877 89999999998877 45555667888888655 5779999999999988764 34466
Q ss_pred HHHHHHHHHHhccCCCCcccHHHHHHHHHhhhccccccccccchHHHHHHHHHHhCCCCCCceeHHHHHHHHHcCC
Q 042007 173 DARLQIFFDMCDKNGDGILTEDEVREVIVLSASENKLSNLKENSSTYAALIMEKLDPDCKGYIEMWQLEILLRGMV 248 (844)
Q Consensus 173 ~~~l~~~F~~fD~d~dG~It~eEl~~il~~~~~~~~l~~~~~~~~e~~~~if~~~D~d~dG~It~~EF~~ll~~~~ 248 (844)
++.++.+|+.||+|++|+|+.+||..++.... ..+ .++.+..+|..+|.|++|.|+++||..+|...|
T Consensus 89 ~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~--~~l------~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~ 156 (158)
T PTZ00183 89 REEILKAFRLFDDDKTGKISLKNLKRVAKELG--ETI------TDEELQEMIDEADRNGDGEISEEEFYRIMKKTN 156 (158)
T ss_pred HHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhC--CCC------CHHHHHHHHHHhCCCCCCcCcHHHHHHHHhccc
Confidence 78999999999999999999999999996432 122 256688899999999999999999999998765
No 83
>PTZ00184 calmodulin; Provisional
Probab=99.53 E-value=1.5e-13 Score=133.29 Aligned_cols=135 Identities=16% Similarity=0.297 Sum_probs=110.7
Q ss_pred hHHHHHHHHHHHccc--CCCCcCHHHHhhcc---CCCCCHHHHHHHHHHHhcccCCCCCCceeHHHHHHHHHHhc-cCCh
Q 042007 99 NDAWRSIERRFQQFA--VSGRLPKDKFGICV---GMGESTEFSVGVFEALARRRKVNTENGITKEEVRMFWEDMT-KKDL 172 (844)
Q Consensus 99 ~~~~~~l~~~F~~ld--~dG~is~~eF~~~l---g~~~~~~~~~~lf~~l~~~~~~d~dG~I~f~EF~~~l~~~~-~~~~ 172 (844)
.++++++++.|..+| ++|.|+.+||..++ +.......+..+|+.++ .+++|.|+++||+.++.... ....
T Consensus 7 ~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d----~~~~g~i~~~ef~~~l~~~~~~~~~ 82 (149)
T PTZ00184 7 EEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVD----ADGNGTIDFPEFLTLMARKMKDTDS 82 (149)
T ss_pred HHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcC----cCCCCcCcHHHHHHHHHHhccCCcH
Confidence 467788888888887 89999999999776 55455667788888655 57799999999999987653 4566
Q ss_pred HHHHHHHHHHhccCCCCcccHHHHHHHHHhhhccccccccccchHHHHHHHHHHhCCCCCCceeHHHHHHHHH
Q 042007 173 DARLQIFFDMCDKNGDGILTEDEVREVIVLSASENKLSNLKENSSTYAALIMEKLDPDCKGYIEMWQLEILLR 245 (844)
Q Consensus 173 ~~~l~~~F~~fD~d~dG~It~eEl~~il~~~~~~~~l~~~~~~~~e~~~~if~~~D~d~dG~It~~EF~~ll~ 245 (844)
++.++.+|+.||.|++|+|+.+|++.++.... ..+ ..+.+..+|+.+|.|++|.|+|+||..+|.
T Consensus 83 ~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~--~~~------~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 147 (149)
T PTZ00184 83 EEEIKEAFKVFDRDGNGFISAAELRHVMTNLG--EKL------TDEEVDEMIREADVDGDGQINYEEFVKMMM 147 (149)
T ss_pred HHHHHHHHHhhCCCCCCeEeHHHHHHHHHHHC--CCC------CHHHHHHHHHhcCCCCCCcCcHHHHHHHHh
Confidence 78899999999999999999999999996532 112 356688899999999999999999998875
No 84
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=99.52 E-value=7.5e-14 Score=127.74 Aligned_cols=152 Identities=16% Similarity=0.278 Sum_probs=123.9
Q ss_pred hhhhhhhhhccCCCchHHHHHHHHHHHcccC-------------CCCcCHHHHhhccCCCCCHHHHHHHHHHHhcccCCC
Q 042007 84 LQSLRFLDRTVTGKENDAWRSIERRFQQFAV-------------SGRLPKDKFGICVGMGESTEFSVGVFEALARRRKVN 150 (844)
Q Consensus 84 l~~l~~i~~~~~~~~~~~~~~l~~~F~~ld~-------------dG~is~~eF~~~lg~~~~~~~~~~lf~~l~~~~~~d 150 (844)
-+...|+.+ .++.+|.++|..+.+ .-+++.+...+...+++ .+|.+++.+++. .|
T Consensus 16 YQDCTFFtr-------KdIlrl~~Rf~~L~P~lVP~~~~~~~~~~v~vp~e~i~kMPELke-npfk~ri~e~FS----eD 83 (189)
T KOG0038|consen 16 YQDCTFFTR-------KDILRLHKRFYELAPHLVPTDMTGNRPPIVKVPFELIEKMPELKE-NPFKRRICEVFS----ED 83 (189)
T ss_pred hcccccccH-------HHHHHHHHHHHHhCcccccccccCCCCCceeecHHHHhhChhhhc-ChHHHHHHHHhc----cC
Confidence 344555555 489999999998861 12466677776666664 578999999777 47
Q ss_pred CCCceeHHHHHHHHHHhccCCh-HHHHHHHHHHhccCCCCcccHHHHHHHHHhhhccccccccccchHHHHHHHHHHhCC
Q 042007 151 TENGITKEEVRMFWEDMTKKDL-DARLQIFFDMCDKNGDGILTEDEVREVIVLSASENKLSNLKENSSTYAALIMEKLDP 229 (844)
Q Consensus 151 ~dG~I~f~EF~~~l~~~~~~~~-~~~l~~~F~~fD~d~dG~It~eEl~~il~~~~~~~~l~~~~~~~~e~~~~if~~~D~ 229 (844)
|+|.++|++|+++++.+++..+ +-++.-||+.||-|+|++|-.+++...+..+.. +.++ ++..+..++++++|+|.
T Consensus 84 G~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr-~eLs--~eEv~~i~ekvieEAD~ 160 (189)
T KOG0038|consen 84 GRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTR-DELS--DEEVELICEKVIEEADL 160 (189)
T ss_pred CCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhh-ccCC--HHHHHHHHHHHHHHhcC
Confidence 7999999999999999987655 558999999999999999999999999976543 4455 56677789999999999
Q ss_pred CCCCceeHHHHHHHHHcCCCC
Q 042007 230 DCKGYIEMWQLEILLRGMVNE 250 (844)
Q Consensus 230 d~dG~It~~EF~~ll~~~~~~ 250 (844)
||||.|++.||+.++.+.|+.
T Consensus 161 DgDgkl~~~eFe~~i~raPDF 181 (189)
T KOG0038|consen 161 DGDGKLSFAEFEHVILRAPDF 181 (189)
T ss_pred CCCCcccHHHHHHHHHhCcch
Confidence 999999999999999999865
No 85
>cd06203 methionine_synthase_red Human methionine synthase reductase (MSR) restores methionine sythase which is responsible for the regeneration of methionine from homocysteine, as well as the coversion of methyltetrahydrofolate to tetrahydrofolate. In MSR, electrons are transferred from NADPH to FAD to FMN to cob(II)alamin. MSR resembles proteins of the cytochrome p450 family including nitric oxide synthase, the alpha subunit of sulfite reductase, but contains an extended hinge region. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPORs resemble ferredoxin reductase (FNR) but have a connecting subdomain inserted within the flavin binding region, which helps orient the FMN binding doamin with the FNR module. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme
Probab=99.51 E-value=3.6e-13 Score=152.27 Aligned_cols=136 Identities=15% Similarity=0.222 Sum_probs=95.9
Q ss_pred CCCccCcccccCCCC--CceEEEEEec-----CCchHHHHHHHHhhcCCCCCCCCCCCcchhhhhhhhhccccccccccC
Q 042007 572 PFEWHPFSITSAPGD--YYLSVHIRTL-----GDWTTELKQRFEKVCEAPAPAKPNRGNLMRMETKSAANNANFEQIQAS 644 (844)
Q Consensus 572 ~~e~HPFTI~s~p~~--~~l~l~Ir~~-----G~~T~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 644 (844)
..+.|+|||+|+|.. +.++++|+.. |-.|..|.++..... .+|
T Consensus 171 ~~~~R~YSIsSsp~~~~~~i~l~v~~v~~~~~G~~S~~L~~l~~~~~------~~G------------------------ 220 (398)
T cd06203 171 RLQPRPYSIASSPLEGPGKLRFIFSVVEFPAKGLCTSWLESLCLSAS------SHG------------------------ 220 (398)
T ss_pred cCCCcceeecCCcccCCCeEEEEEEEEEecCCChhhHHHHHhhhhhc------CCC------------------------
Confidence 357899999999964 7899988874 668888887642110 134
Q ss_pred cCEEEEeC-ccCCCCCCCC-CCCeEEEEEcccchhchHHHHHHHHHHhhhcCcchhhhcCCCCCCCcEEEEEEEeCCC-C
Q 042007 645 FPKILIKG-PYGAPAQDYK-NYDILLLIGLGIGATPFISIIKDLLNHIKSHERDTEFLENGFKKGPERAYFYWVTREQ-G 721 (844)
Q Consensus 645 ~~~v~IdG-PyG~~~~~~~-~~~~vvlVagGiGITp~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~~v~l~W~~R~~-~ 721 (844)
.+|.+.| |.|.+..+.. ....+||||||+||||++|++++.....+... .....++.|+|++|+. .
T Consensus 221 -~~v~i~~~~~g~F~lp~~~~~~piImIa~GtGIAP~rs~lq~~~~~~~~~~----------~~~~~~~~Lf~G~R~~~~ 289 (398)
T cd06203 221 -VKVPFYLRSSSRFRLPPDDLRRPIIMVGPGTGVAPFLGFLQHREKLKESHT----------ETVFGEAWLFFGCRHRDR 289 (398)
T ss_pred -CEEEEEEecCCCcCCCCcCCCCCEEEEcCCcChHHHHHHHHHHHHHHhhcc----------cCCCCCEEEEEeCCCCCc
Confidence 5788888 6776654333 34689999999999999999998765321110 0134679999999998 5
Q ss_pred hhhhHHHHHHHHhccCCCCeEEEEEEEecc
Q 042007 722 SFEWFKGVMDDIADHDDKNVIEMHNYLTSV 751 (844)
Q Consensus 722 ~~~wf~~~L~~l~~~~~~~~l~i~~ylT~~ 751 (844)
++ .|.++|+++++.. ...++++.+++.
T Consensus 290 d~-~y~~El~~~~~~~--~~~~~~~a~SRd 316 (398)
T cd06203 290 DY-LFRDELEEFLEEG--ILTRLIVAFSRD 316 (398)
T ss_pred ch-hHHHHHHHHHHcC--CCceEEEEECCC
Confidence 66 6889998887642 234455555553
No 86
>cd06204 CYPOR NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredo
Probab=99.48 E-value=5.6e-13 Score=151.46 Aligned_cols=195 Identities=16% Similarity=0.217 Sum_probs=117.6
Q ss_pred CCCccCcccccCCC--CCceEEEEEec-----------CCchHHHHHHHHhhcCCCCCCCCCCCcchhhhhhhhhccccc
Q 042007 572 PFEWHPFSITSAPG--DYYLSVHIRTL-----------GDWTTELKQRFEKVCEAPAPAKPNRGNLMRMETKSAANNANF 638 (844)
Q Consensus 572 ~~e~HPFTI~s~p~--~~~l~l~Ir~~-----------G~~T~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 638 (844)
..+.++|||+|+|. .+.+++.|+.. |-.|..|.+......... .+.- .......
T Consensus 175 ~~~pR~YSIsSsp~~~~~~i~ltV~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~---~~~~------~~~~~~~---- 241 (416)
T cd06204 175 RLQPRYYSISSSSKVHPNRIHITAVVVKYPTPTGRIIKGVATNWLLALKPALNGEK---PPTP------YYLSGPR---- 241 (416)
T ss_pred cCCCcceeeccCccCCCCEEEEEEEEEEeeCCCCCEEeeeehHHHHhhhhhhcccc---cccc------ccccccc----
Confidence 35889999999995 36688887753 667888887642110000 0000 0000000
Q ss_pred cccccCcCEEEEeCccCCCCCCCCCCCeEEEEEcccchhchHHHHHHHHHHhhhcCcchhhhcCCCCCCCcEEEEEEEeC
Q 042007 639 EQIQASFPKILIKGPYGAPAQDYKNYDILLLIGLGIGATPFISIIKDLLNHIKSHERDTEFLENGFKKGPERAYFYWVTR 718 (844)
Q Consensus 639 ~~~~~~~~~v~IdGPyG~~~~~~~~~~~vvlVagGiGITp~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~~v~l~W~~R 718 (844)
. ......|.+.+|.|.+..+......+||||||+||||++|++++.....+.+. ...++.|+|++|
T Consensus 242 ~--~~~g~~v~v~~~~g~F~lp~~~~~piImIa~GtGIAP~~s~l~~~~~~~~~~~------------~~~~v~L~~G~R 307 (416)
T cd06204 242 K--KGGGSKVPVFVRRSNFRLPTKPSTPVIMIGPGTGVAPFRGFIQERAALKESGK------------KVGPTLLFFGCR 307 (416)
T ss_pred c--cCCCCeEEEEEecCCCCCCCCCCCCEEEEeCCcchHHHHHHHHHHHHHhhccC------------ccCCEEEEEcCC
Confidence 0 00125688888888875443345789999999999999999998764432111 245799999999
Q ss_pred CC-ChhhhHHHHHHHHhccCCCCeEEEEEEEecccCCCChhHHHHHHHHHhhhhcCCccccccCcccccccCC--ChHHH
Q 042007 719 EQ-GSFEWFKGVMDDIADHDDKNVIEMHNYLTSVYEEGDARSALIAMVQKLQHAKNGVDIVSESRIKTHFARP--NWRKV 795 (844)
Q Consensus 719 ~~-~~~~wf~~~L~~l~~~~~~~~l~i~~ylT~~~~~~d~~~~~~~~~~~~~~~~~~~d~~sg~~~~~~~gRP--d~~~v 795 (844)
+. +++ .|.++++++++. ...+.++..+++..+ .... .| +|- +.+++
T Consensus 308 ~~~~d~-ly~~el~~~~~~--~~~~~l~~a~Sr~~~---~k~y----Vq---------------------~~i~~~~~~~ 356 (416)
T cd06204 308 HPDEDF-IYKDELEEYAKL--GGLLELVTAFSREQP---KKVY----VQ---------------------HRLAEHAEQV 356 (416)
T ss_pred CCCccc-chHHHHHHHHHc--CCceEEEEEECcCCC---CCcc----hH---------------------HHHHHhHHHH
Confidence 98 565 678889888763 235666666554321 0000 00 000 11122
Q ss_pred HHHHHhhCCCCcEEEEEeCChh-HHHHHHHHHHhh
Q 042007 796 FGQLATDHESSRIGVFYCGSAT-LTKTLKELCLEF 829 (844)
Q Consensus 796 ~~~~~~~~~~~~v~V~~CGP~~-m~~~vr~~~~~~ 829 (844)
.+.+ . +...||+|||++ |+++|+++..+.
T Consensus 357 ~~~l-~----~~~~vYvCGp~~~M~~~V~~~L~~i 386 (416)
T cd06204 357 WELI-N----EGAYIYVCGDAKNMARDVEKTLLEI 386 (416)
T ss_pred HHHH-H----cCCEEEEECCcccchHHHHHHHHHH
Confidence 1111 1 124799999998 999999988774
No 87
>PRK06214 sulfite reductase; Provisional
Probab=99.47 E-value=1e-12 Score=151.42 Aligned_cols=126 Identities=17% Similarity=0.358 Sum_probs=89.5
Q ss_pred CCCccCcccccCCC--CCceEEEEEec----------CCchHHHHHHHHhhcCCCCCCCCCCCcchhhhhhhhhcccccc
Q 042007 572 PFEWHPFSITSAPG--DYYLSVHIRTL----------GDWTTELKQRFEKVCEAPAPAKPNRGNLMRMETKSAANNANFE 639 (844)
Q Consensus 572 ~~e~HPFTI~s~p~--~~~l~l~Ir~~----------G~~T~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 639 (844)
+.+.|||||+|+|. .+.++|+|+.. |..|..|.+.+ ++|.
T Consensus 313 ~l~pR~YSISSsP~~~~~~i~ltV~~V~~~~~~~~~~G~~S~~L~~~l----------~~Gd------------------ 364 (530)
T PRK06214 313 PLQPRLYSISSSPKATPGRVSLTVDAVRYEIGSRLRLGVASTFLGERL----------APGT------------------ 364 (530)
T ss_pred CCCcEEEEeccCCcCCCCEEEEEEEEEeeccCCccccchhhHHHHhcC----------CCCC------------------
Confidence 45889999999995 47899999864 77788887543 3452
Q ss_pred ccccCcCEEEEeCccCCCCCCCCCCCeEEEEEcccchhchHHHHHHHHHHhhhcCcchhhhcCCCCCCCcEEEEEEEeCC
Q 042007 640 QIQASFPKILIKGPYGAPAQDYKNYDILLLIGLGIGATPFISIIKDLLNHIKSHERDTEFLENGFKKGPERAYFYWVTRE 719 (844)
Q Consensus 640 ~~~~~~~~v~IdGPyG~~~~~~~~~~~vvlVagGiGITp~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~~v~l~W~~R~ 719 (844)
...+.+.+|+| +..+......+||||+|+|||||+|+|++..... ...+++|+|++|.
T Consensus 365 -----~V~v~i~~~~g-F~lp~~~~~PiImIg~GTGIAPfrsfLq~r~~~~----------------~~g~~~LffG~R~ 422 (530)
T PRK06214 365 -----RVRVYVQKAHG-FALPADPNTPIIMVGPGTGIAPFRAFLHERAATK----------------APGRNWLFFGHQR 422 (530)
T ss_pred -----EEEEEecCCCC-CccCCCCCCCEEEEcCCeeHHHHHHHHHHHHHhc----------------CCCCeEEEEEecC
Confidence 24555677887 5433334468999999999999999999865432 2356899999966
Q ss_pred C-ChhhhHHHHHHHHhccCCCCeEEEEEEEec
Q 042007 720 Q-GSFEWFKGVMDDIADHDDKNVIEMHNYLTS 750 (844)
Q Consensus 720 ~-~~~~wf~~~L~~l~~~~~~~~l~i~~ylT~ 750 (844)
. .++ .|.++|+++.+.. ....+++..++
T Consensus 423 ~~~D~-ly~dEL~~l~~~g--~l~~l~~afSR 451 (530)
T PRK06214 423 SATDF-FYEDELNGLKAAG--VLTRLSLAWSR 451 (530)
T ss_pred Chhhh-HHHHHHHHHHHhC--CceEEEEEEec
Confidence 4 455 7889998887642 23345555554
No 88
>PF01794 Ferric_reduct: Ferric reductase like transmembrane component; InterPro: IPR013130 This family includes a common region in the transmembrane proteins mammalian cytochrome b-245 heavy chain (gp91-phox), ferric reductase transmembrane component in yeast and respiratory burst oxidase from Arabidopsis thaliana. This may be a family of flavocytochromes capable of moving electrons across the plasma membrane [] that include a potential FAD binding domain. Mutations in the sequence of cytochrome b-245 heavy chain (gp91-phox) lead to the X-linked chronic granulomatous disease. The bacteriocidal ability of phagocytic cells is reduced and is characterised by the absence of a functional plasma membrane associated NADPH oxidase [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0016021 integral to membrane
Probab=99.46 E-value=1.2e-13 Score=130.33 Aligned_cols=121 Identities=23% Similarity=0.360 Sum_probs=89.8
Q ss_pred cccchhhhHHHHHHHhhhh-hhhhccccccccccCcchhhhHHHHHHHHHHHHHHHHHhhhhccccccccCCchhhhhhh
Q 042007 334 GETLKFNMALILLTVCRRS-LTKLRSTFLHKIIPFDDNLNFHKLIALGIAIGSIVHTLFHLLCNYPKLSSCRPEKFMYLL 412 (844)
Q Consensus 334 ~~~~~~~~~lill~~~Rn~-l~~L~~~~~~~~v~~d~~~~fHr~ig~~~~~~~~vH~~~~~~~~f~~~~~~~~~~~~~~~ 412 (844)
|.+...|+++++++++||. +.+++ ++|+|+.+.+|||+|+++++++++|++.++.. +...... ..
T Consensus 2 G~~a~~~l~~~~~l~~R~~~l~~~~------~~~~~~~~~~Hr~lg~~~~~~~~~H~~~~~~~-~~~~~~~-~~------ 67 (125)
T PF01794_consen 2 GILAFALLPLVFLLGLRNSPLARLT------GISFDRLLRFHRWLGRLAFFLALLHGVLYLIN-WLRFGGW-DW------ 67 (125)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHh------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhh-ch------
Confidence 4566789999999999994 44443 46899999999999999999999999999842 2111000 00
Q ss_pred hcccCCCCCceeeeccccchhHHHHHHHHHHHHHHhhhhhhh-hccccccccccccccchhhHHHHHHHHHHHHHH
Q 042007 413 GPALNYHQPTYYDLMIHTVGYTGVLMLVIMAISFTLATHSFR-RNVIKLPWIFHRFAGFNSFWYAHHLLVLAYVLL 487 (844)
Q Consensus 413 ~~~~~~~~p~~~~~~~~~~~~tG~~~~v~l~i~~~~s~~~~R-r~~~~~~~~~~~~~~ye~F~~~H~l~~~~~v~l 487 (844)
..............+|+++++++++++++|.+++| |+. ||.|+++|++++++++++
T Consensus 68 -------~~~~~~~~~~~~~~~G~~a~~~l~~l~~tS~~~~R~r~~------------ye~f~~~H~~~~~~~~l~ 124 (125)
T PF01794_consen 68 -------QEWFNAWLTGPYNLTGIIALLLLLILAVTSFPWIRRRRN------------YEIFYYLHILFYIAFLLA 124 (125)
T ss_pred -------hHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhCc------------HHHHHHHHHHHHHHHHHH
Confidence 00011122334557999999999999999999999 555 999999999998877653
No 89
>cd06202 Nitric_oxide_synthase The ferredoxin-reductase (FNR) like C-terminal domain of the nitric oxide synthase (NOS) fuses with a heme-containing N-terminal oxidase domain. The reductase portion is similar in structure to NADPH dependent cytochrome-450 reductase (CYPOR), having an inserted connecting sub-domain within the FAD binding portion of FNR. NOS differs from CYPOR in a requirement for the cofactor tetrahydrobiopterin and unlike most CYPOR is dimeric. Nitric oxide synthase produces nitric oxide in the conversion of L-arginine to L-citruline. NOS has been implicated in a variety of processes including cytotoxicity, anti-inflamation, neurotransmission, and vascular smooth muscle relaxation.
Probab=99.45 E-value=1.5e-12 Score=147.55 Aligned_cols=181 Identities=15% Similarity=0.206 Sum_probs=110.6
Q ss_pred CCccCcccccCCC--CCceEEEEEec-------------CCchHHHHHHHHhhcCCCCCCCCCCCcchhhhhhhhhcccc
Q 042007 573 FEWHPFSITSAPG--DYYLSVHIRTL-------------GDWTTELKQRFEKVCEAPAPAKPNRGNLMRMETKSAANNAN 637 (844)
Q Consensus 573 ~e~HPFTI~s~p~--~~~l~l~Ir~~-------------G~~T~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 637 (844)
.+.+||||+|+|. .+.+.+.|+.. |-.|..|.++ ++|
T Consensus 175 l~pR~YSIsSsp~~~~~~~~l~v~vv~~~~~~~~~~~~~G~~S~~L~~l-----------~~G----------------- 226 (406)
T cd06202 175 LQPRYYSISSSPDMYPGEIHLTVAVVSYRTRDGQGPVHHGVCSTWLNGL-----------TPG----------------- 226 (406)
T ss_pred cCCcccccCCCccCCCCeEEEEEEEEEEECCCCCCCcccccHHHHHHhC-----------CCC-----------------
Confidence 4789999999995 46677776552 6677777553 355
Q ss_pred ccccccCcCEEEEeCccC-CCCCCCCCCCeEEEEEcccchhchHHHHHHHHHHhhhcCcchhhhcCCCCCCCcEEEEEEE
Q 042007 638 FEQIQASFPKILIKGPYG-APAQDYKNYDILLLIGLGIGATPFISIIKDLLNHIKSHERDTEFLENGFKKGPERAYFYWV 716 (844)
Q Consensus 638 ~~~~~~~~~~v~IdGPyG-~~~~~~~~~~~vvlVagGiGITp~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~~v~l~W~ 716 (844)
..|.|.+|-| .+..+-.....+||||||+|||||+|+|++.....+.... ......++.|+++
T Consensus 227 --------d~v~v~~~~~~~F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~~~~--------~~~~~g~v~L~~G 290 (406)
T cd06202 227 --------DTVPCFVRSAPSFHLPEDPSVPVIMVGPGTGIAPFRSFWQQRQYDLRMSED--------PGKKFGDMTLFFG 290 (406)
T ss_pred --------CEEEEEEeeCCccCCCCCCCCCEEEEcCCcChHHHHHHHHHHHHHhhhccc--------ccCCCCCEEEEEc
Confidence 4566665433 4433323446899999999999999999986543210000 0013468999999
Q ss_pred eCCC-ChhhhHHHHHHHHhccCCCCeEEEEEEEecccCCCChhHHHHHHHHHhhhhcCCccccccCcccccccCCChHHH
Q 042007 717 TREQ-GSFEWFKGVMDDIADHDDKNVIEMHNYLTSVYEEGDARSALIAMVQKLQHAKNGVDIVSESRIKTHFARPNWRKV 795 (844)
Q Consensus 717 ~R~~-~~~~wf~~~L~~l~~~~~~~~l~i~~ylT~~~~~~d~~~~~~~~~~~~~~~~~~~d~~sg~~~~~~~gRPd~~~v 795 (844)
+|+. .++ .|+++|+++.+. ....+++..+++.... .+.- .|+. + +-+-+++
T Consensus 291 ~R~~~~d~-ly~~El~~~~~~--~~~~~~~~a~SR~~~~--~k~y----Vq~~---------l----------~~~~~~v 342 (406)
T cd06202 291 CRNSTIDD-IYKEETEEAKNK--GVLTEVYTALSREPGK--PKTY----VQDL---------L----------KEQAESV 342 (406)
T ss_pred CCCCCccc-chHHHHHHHHHc--CCCceEEEEEcCCCCC--CCee----hhhH---------H----------HHhHHHH
Confidence 9999 565 689999888754 2344566666653211 0000 0000 0 0001111
Q ss_pred HHHHHhhCCCCcEEEEEeCChhHHHHHHHHHHhh
Q 042007 796 FGQLATDHESSRIGVFYCGSATLTKTLKELCLEF 829 (844)
Q Consensus 796 ~~~~~~~~~~~~v~V~~CGP~~m~~~vr~~~~~~ 829 (844)
.+-+.. ....||+|||+.|+++|+++..+.
T Consensus 343 ~~~l~~----~~~~iYvCG~~~M~~~V~~~L~~i 372 (406)
T cd06202 343 YDALVR----EGGHIYVCGDVTMAEDVSQTIQRI 372 (406)
T ss_pred HHHHHh----CCCEEEEeCCCchHHHHHHHHHHH
Confidence 111111 134799999999999999988763
No 90
>PF00175 NAD_binding_1: Oxidoreductase NAD-binding domain ; InterPro: IPR001433 Bacterial ferredoxin-NADP+ reductase may be bound to the thylakoid membrane or anchored to the thylakoid-bound phycobilisomes. Chloroplast ferredoxin-NADP+ reductase (1.18.1.2 from EC) may play a key role in regulating the relative amounts of cyclic and non-cyclic electron flow to meet the demands of the plant for ATP and reducing power. It is involved in the final step in the linear photosynthetic electron transport chain and has also been implicated in cyclic electron flow around photosystem I where its role would be to return electrons from ferredoxin to the cytochrome B-F complex. This domain is present in a variety of proteins that include, bacterial flavohemoprotein, mammalian NADH-cytochrome b5 reductase, eukaryotic NADPH-cytochrome P450 reductase, nitrate reductase from plants, nitric-oxide synthase, bacterial vanillate demethylase, as well as others.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1UMK_A 1CNE_A 2CND_A 1CNF_A 4FK8_A 4F7D_A 2XNJ_B 1FDR_A 1JB9_A 3LVB_A ....
Probab=99.41 E-value=9.7e-13 Score=120.94 Aligned_cols=107 Identities=19% Similarity=0.399 Sum_probs=72.1
Q ss_pred EEEcccchhchHHHHHHHHHHhhhcCcchhhhcCCCCCCCcEEEEEEEeCCCChhhhHHHHHHHHhccCCCCeEEEEEEE
Q 042007 669 LIGLGIGATPFISIIKDLLNHIKSHERDTEFLENGFKKGPERAYFYWVTREQGSFEWFKGVMDDIADHDDKNVIEMHNYL 748 (844)
Q Consensus 669 lVagGiGITp~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~~v~l~W~~R~~~~~~wf~~~L~~l~~~~~~~~l~i~~yl 748 (844)
|||||+||||++|+++.++.+. ..++++|+|++|+.+++ .|.++|.++++.... .+.+ +.
T Consensus 1 lIagGtGIaP~~s~l~~~~~~~----------------~~~~v~l~~~~r~~~~~-~~~~~l~~~~~~~~~-~~~~--~~ 60 (109)
T PF00175_consen 1 LIAGGTGIAPFLSMLRYLLERN----------------DNRKVTLFYGARTPEDL-LFRDELEALAQEYPN-RFHV--VY 60 (109)
T ss_dssp EEEEGGGGHHHHHHHHHHHHHT----------------CTSEEEEEEEESSGGGS-TTHHHHHHHHHHSTT-CEEE--EE
T ss_pred CeecceeHHHHHHHHHHHHHhC----------------CCCCEEEEEEEcccccc-cchhHHHHHHhhccc-cccc--cc
Confidence 7999999999999999998772 35899999999999998 788999998866433 3333 32
Q ss_pred ecccCCCChhHHHHHHHHHhhhhcCCccccccCcccccccCCChHHHH-HHHHh-hCCCCcEEEEEeCChhHHHHHHH
Q 042007 749 TSVYEEGDARSALIAMVQKLQHAKNGVDIVSESRIKTHFARPNWRKVF-GQLAT-DHESSRIGVFYCGSATLTKTLKE 824 (844)
Q Consensus 749 T~~~~~~d~~~~~~~~~~~~~~~~~~~d~~sg~~~~~~~gRPd~~~v~-~~~~~-~~~~~~v~V~~CGP~~m~~~vr~ 824 (844)
+...+... ..+.|| +.+.+ ++... .....+..||+|||++|++++++
T Consensus 61 ~~~~~~~~---------------------------~~~~g~--v~~~~~~~~~~~~~~~~~~~v~iCGp~~m~~~v~~ 109 (109)
T PF00175_consen 61 VSSPDDGW---------------------------DGFKGR--VTDLLLEDLLPEKIDPDDTHVYICGPPPMMKAVRK 109 (109)
T ss_dssp ETTTTSST---------------------------TSEESS--HHHHHHHHHHHHHHCTTTEEEEEEEEHHHHHHHHH
T ss_pred cccccccc---------------------------CCceee--hhHHHHHhhcccccCCCCCEEEEECCHHHHHHhcC
Confidence 22111110 001122 22222 33333 22234678999999999999875
No 91
>PRK10953 cysJ sulfite reductase subunit alpha; Provisional
Probab=99.38 E-value=4.6e-12 Score=149.17 Aligned_cols=126 Identities=12% Similarity=0.210 Sum_probs=92.9
Q ss_pred CccCCCcEEEEEcCCCCCCCccCcccccCCCC--CceEEEEEe----------cCCchHHHHHHHHhhcCCCCCCCCCCC
Q 042007 555 FKYQSGMYLFVKCPDLSPFEWHPFSITSAPGD--YYLSVHIRT----------LGDWTTELKQRFEKVCEAPAPAKPNRG 622 (844)
Q Consensus 555 ~~~~pGQyv~l~~p~~s~~e~HPFTI~s~p~~--~~l~l~Ir~----------~G~~T~~L~~~~~~~~~~~~~~~~g~~ 622 (844)
.++.||||+-+..| .+.++|||+|+|.. +.+.+.|+. .|..|..|.+.+ ++|
T Consensus 370 ~~~~~~q~l~ll~~----l~pR~YSIaSsp~~~~~~v~ltv~~v~~~~~g~~~~G~~S~~L~~~l----------~~G-- 433 (600)
T PRK10953 370 AQLDAEQLIGLLRP----LTPRLYSIASSQAEVENEVHITVGVVRYDIEGRARAGGASSFLADRL----------EEE-- 433 (600)
T ss_pred CCCCHHHHHHhCCC----CCCeeeecccCCCCCCCeEEEEEEEEEeecCCCCcCceEhhhhhhcC----------CCC--
Confidence 36789999988765 36899999999953 556666543 355667676533 245
Q ss_pred cchhhhhhhhhccccccccccCcCEEEEeCccC-CCCCCCCCCCeEEEEEcccchhchHHHHHHHHHHhhhcCcchhhhc
Q 042007 623 NLMRMETKSAANNANFEQIQASFPKILIKGPYG-APAQDYKNYDILLLIGLGIGATPFISIIKDLLNHIKSHERDTEFLE 701 (844)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~~~~~v~IdGPyG-~~~~~~~~~~~vvlVagGiGITp~lsil~~l~~~~~~~~~~~~~~~ 701 (844)
.+|.|.||.| .+..+......+||||+|+||||+.|++++.....
T Consensus 434 -----------------------d~v~v~~~~~~~F~lp~~~~~piImIg~GTGIAPfrsflq~r~~~~----------- 479 (600)
T PRK10953 434 -----------------------GEVRVFIEHNDNFRLPANPETPVIMIGPGTGIAPFRAFMQQRAADG----------- 479 (600)
T ss_pred -----------------------CEEEEEeccCCcccCCCCCCCCEEEEecCcCcHHHHHHHHHHHHcC-----------
Confidence 5788999886 45443334568999999999999999999876432
Q ss_pred CCCCCCCcEEEEEEEeCC-CChhhhHHHHHHHHhcc
Q 042007 702 NGFKKGPERAYFYWVTRE-QGSFEWFKGVMDDIADH 736 (844)
Q Consensus 702 ~~~~~~~~~v~l~W~~R~-~~~~~wf~~~L~~l~~~ 736 (844)
...+++|+|++|+ ..++ .|+++++++.+.
T Consensus 480 -----~~~~~~LffG~R~~~~D~-lY~~El~~~~~~ 509 (600)
T PRK10953 480 -----APGKNWLFFGNPHFTEDF-LYQVEWQRYVKE 509 (600)
T ss_pred -----CCCCeEEEeeccCCccch-hHHHHHHHHHHc
Confidence 2357999999998 5565 789999988764
No 92
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.36 E-value=3.2e-11 Score=112.22 Aligned_cols=131 Identities=15% Similarity=0.202 Sum_probs=109.9
Q ss_pred hHHHHHHHHHHHccc--CCCCcCHHHHhhcc---CCCCCHHHHHHHHHHHhcccCCCCCCceeHHHHHHHHH-HhccCCh
Q 042007 99 NDAWRSIERRFQQFA--VSGRLPKDKFGICV---GMGESTEFSVGVFEALARRRKVNTENGITKEEVRMFWE-DMTKKDL 172 (844)
Q Consensus 99 ~~~~~~l~~~F~~ld--~dG~is~~eF~~~l---g~~~~~~~~~~lf~~l~~~~~~d~dG~I~f~EF~~~l~-~~~~~~~ 172 (844)
..+++|+++.|..+| +||.|++++++..+ |-..+...+..++. ...|.|+|.-|+.++- .++..++
T Consensus 28 q~QIqEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~elDaM~~--------Ea~gPINft~FLTmfGekL~gtdp 99 (171)
T KOG0031|consen 28 QSQIQEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKIASDEELDAMMK--------EAPGPINFTVFLTMFGEKLNGTDP 99 (171)
T ss_pred HHHHHHHHHHHHHHhccCCCcccHHHHHHHHHHcCCCCCHHHHHHHHH--------hCCCCeeHHHHHHHHHHHhcCCCH
Confidence 368999999999999 89999999998887 44444444444443 4578999999999985 5666789
Q ss_pred HHHHHHHHHHhccCCCCcccHHHHHHHHHhhhccccccccccchHHHHHHHHHHhCCCCCCceeHHHHHHHHH
Q 042007 173 DARLQIFFDMCDKNGDGILTEDEVREVIVLSASENKLSNLKENSSTYAALIMEKLDPDCKGYIEMWQLEILLR 245 (844)
Q Consensus 173 ~~~l~~~F~~fD~d~dG~It~eEl~~il~~~~~~~~l~~~~~~~~e~~~~if~~~D~d~dG~It~~EF~~ll~ 245 (844)
++-+..||++||.+++|.|..+.|+++|...+ +.-.+|+++.|++.+-.|..|.|+|.+|..++.
T Consensus 100 e~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~g--------Dr~~~eEV~~m~r~~p~d~~G~~dy~~~~~~it 164 (171)
T KOG0031|consen 100 EEVILNAFKTFDDEGSGKIDEDYLRELLTTMG--------DRFTDEEVDEMYREAPIDKKGNFDYKAFTYIIT 164 (171)
T ss_pred HHHHHHHHHhcCccCCCccCHHHHHHHHHHhc--------ccCCHHHHHHHHHhCCcccCCceeHHHHHHHHH
Confidence 99999999999999999999999999996522 233578899999999999999999999999997
No 93
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=99.17 E-value=2.6e-10 Score=121.93 Aligned_cols=130 Identities=19% Similarity=0.234 Sum_probs=107.0
Q ss_pred HHHHHHHHccc--CCCCcCHHHHhhcc---CCC-CCHHHHHHHHHHHhcccCCCCCCceeHHHHHHHHHHhccCChHHHH
Q 042007 103 RSIERRFQQFA--VSGRLPKDKFGICV---GMG-ESTEFSVGVFEALARRRKVNTENGITKEEVRMFWEDMTKKDLDARL 176 (844)
Q Consensus 103 ~~l~~~F~~ld--~dG~is~~eF~~~l---g~~-~~~~~~~~lf~~l~~~~~~d~dG~I~f~EF~~~l~~~~~~~~~~~l 176 (844)
.+++..|+.+| ++|.++..++.+.+ +.. .....+..+|..++ .|.||.+||+||..++. ..|.++
T Consensus 14 ~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d----~~~dg~vDy~eF~~Y~~-----~~E~~l 84 (463)
T KOG0036|consen 14 IRIRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMD----ANRDGRVDYSEFKRYLD-----NKELEL 84 (463)
T ss_pred HHHHHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcc----cCcCCcccHHHHHHHHH-----HhHHHH
Confidence 34445555555 89999999998655 443 55668888888777 67899999999999985 567899
Q ss_pred HHHHHHhccCCCCcccHHHHHHHHHhhhccccccccccchHHHHHHHHHHhCCCCCCceeHHHHHHHHHcCCC
Q 042007 177 QIFFDMCDKNGDGILTEDEVREVIVLSASENKLSNLKENSSTYAALIMEKLDPDCKGYIEMWQLEILLRGMVN 249 (844)
Q Consensus 177 ~~~F~~fD~d~dG~It~eEl~~il~~~~~~~~l~~~~~~~~e~~~~if~~~D~d~dG~It~~EF~~ll~~~~~ 249 (844)
..+|+..|.|+||+|+.+|+.+-++... .+++ +|.++++|+.+|+|+++.|+++||++.+.-+|.
T Consensus 85 ~~~F~~iD~~hdG~i~~~Ei~~~l~~~g--i~l~------de~~~k~~e~~d~~g~~~I~~~e~rd~~ll~p~ 149 (463)
T KOG0036|consen 85 YRIFQSIDLEHDGKIDPNEIWRYLKDLG--IQLS------DEKAAKFFEHMDKDGKATIDLEEWRDHLLLYPE 149 (463)
T ss_pred HHHHhhhccccCCccCHHHHHHHHHHhC--CccC------HHHHHHHHHHhccCCCeeeccHHHHhhhhcCCh
Confidence 9999999999999999999999997543 2343 677888999999999999999999999998883
No 94
>PF00970 FAD_binding_6: Oxidoreductase FAD-binding domain; InterPro: IPR008333 These sequences contain an oxidoreductase FAD-binding domain. To date, the 3D-structures of the flavoprotein domain of Zea mays (Maize) nitrate reductase [] and of pig NADH:cytochrome b5 reductase [] have been solved. The overall fold is similar to that of ferredoxin:NADP+ reductase []: the FAD-binding domain (N-terminal) has the topology of an anti-parallel beta-barrel, while the NAD(P)-binding domain (C-terminal) has the topology of a classical pyridine dinucleotide-binding fold (i.e. a central parallel beta-sheet flanked by 2 helices on each side).; PDB: 1JB9_A 3LVB_A 3LO8_A 1FRN_A 1FND_A 1BX1_A 1FNC_A 1FNB_A 1BX0_A 1FRQ_A ....
Probab=99.16 E-value=6.5e-11 Score=106.95 Aligned_cols=91 Identities=27% Similarity=0.465 Sum_probs=74.7
Q ss_pred cEEEEEEEEecCCEEEEEEeCCC---CCccCCCcEEEEEcCCCCCCCccCcccccCCCC-CceEEEEEec--CCchHHHH
Q 042007 531 KVEVIKAVIYTGNVLALYMTKPP---GFKYQSGMYLFVKCPDLSPFEWHPFSITSAPGD-YYLSVHIRTL--GDWTTELK 604 (844)
Q Consensus 531 ~~~i~~v~~~~~~v~~l~i~~p~---~~~~~pGQyv~l~~p~~s~~e~HPFTI~s~p~~-~~l~l~Ir~~--G~~T~~L~ 604 (844)
+++|++++.+++++..++|..|. .+.|.||||+.|+++.-+...++||||+|.|.+ +.+.|+||.. |..|+.|.
T Consensus 1 ~~~v~~~~~~s~~~~~~~~~~~~~~~~~~~~pGQ~v~v~~~~~~~~~~R~yS~~s~~~~~~~~~~~ik~~~~G~~S~~L~ 80 (99)
T PF00970_consen 1 KAKVVEIEELSPDVKIFRFKLPDPDQKLDFKPGQFVSVRVPINGKQVSRPYSPASSPDDKGYLEFAIKRYPNGRVSRYLH 80 (99)
T ss_dssp EEEEEEEEEESSSEEEEEEEESSTTTT-SSTTT-EEEEEEEETTEEEEEEEEBCSSTTSSSEEEEEEEECTTSHHHHHHH
T ss_pred CEEEEEEEEeCCCeEEEEEEECCCCcccccCcceEEEEEEccCCcceecceeEeeecCCCCcEEEEEEeccCCHHHHHHH
Confidence 36788999999999999988763 357999999999999434467899999999975 5899999999 88899996
Q ss_pred HHHHhhcCCCCCCCCCCCcchhhhhhhhhccccccccccCcCEEEEeCccCCC
Q 042007 605 QRFEKVCEAPAPAKPNRGNLMRMETKSAANNANFEQIQASFPKILIKGPYGAP 657 (844)
Q Consensus 605 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IdGPyG~~ 657 (844)
++ ++| .+|.|.||+|.+
T Consensus 81 ~l-----------~~G-------------------------d~v~i~gP~G~f 97 (99)
T PF00970_consen 81 QL-----------KPG-------------------------DEVEIRGPYGNF 97 (99)
T ss_dssp TS-----------CTT-------------------------SEEEEEEEESSE
T ss_pred hC-----------CCC-------------------------CEEEEEEccccc
Confidence 53 456 689999999986
No 95
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.13 E-value=1.5e-10 Score=96.21 Aligned_cols=66 Identities=26% Similarity=0.418 Sum_probs=57.0
Q ss_pred HHHHHHHHhccCCCCcccHHHHHHHHHhhhccccccccccchHHHHHHHHHHhCCCCCCceeHHHHHHHH
Q 042007 175 RLQIFFDMCDKNGDGILTEDEVREVIVLSASENKLSNLKENSSTYAALIMEKLDPDCKGYIEMWQLEILL 244 (844)
Q Consensus 175 ~l~~~F~~fD~d~dG~It~eEl~~il~~~~~~~~l~~~~~~~~e~~~~if~~~D~d~dG~It~~EF~~ll 244 (844)
+|+.+|+.||+|+||+|+.+||+.++....... .++..++.++.+|+.+|.|+||.|+++||..+|
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~----~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDM----SDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHS----THHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccc----cHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 588999999999999999999999997644321 145577889999999999999999999999876
No 96
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=99.05 E-value=1.2e-09 Score=131.77 Aligned_cols=117 Identities=18% Similarity=0.266 Sum_probs=93.4
Q ss_pred cEEEEEEEEecCCEEEEEEeCCCC-CccCCCcEEEEEcCCCC--CC-CccCcccccCC-CCCceEEEEEecCCchHHHHH
Q 042007 531 KVEVIKAVIYTGNVLALYMTKPPG-FKYQSGMYLFVKCPDLS--PF-EWHPFSITSAP-GDYYLSVHIRTLGDWTTELKQ 605 (844)
Q Consensus 531 ~~~i~~v~~~~~~v~~l~i~~p~~-~~~~pGQyv~l~~p~~s--~~-e~HPFTI~s~p-~~~~l~l~Ir~~G~~T~~L~~ 605 (844)
..+|++++.+.+++.++++..|.- -.++||||+.|++++.+ .. +..||||++.+ +.+.+++.++..|..|+.|.+
T Consensus 792 ~~~Vv~~~~lap~i~~L~l~aP~iA~~~kPGQFVmL~~~~~g~~~l~~p~P~SI~~vD~e~g~It~i~rvVGkgT~~Ls~ 871 (1028)
T PRK06567 792 TSRVNKINILDDKTFELIIHSPLAAKNFKFGQFFRLQNYSEDAAKLIEPVALSPIDIDVEKGLISFIVFEVGKSTSLCKT 871 (1028)
T ss_pred ceEEEEEEEecCCEEEEEEeCcchhhcCCCCceEEEEeCCCCCccccCceeEEeeccCCCCCEEEEEEEEEChHHHHHhc
Confidence 457888999999999999988753 36889999999986532 12 44689999875 457899999999999999987
Q ss_pred HHHhhcCCCCCCCCCCCcchhhhhhhhhccccccccccCcCEEEEeCccCCCCCCCCCCCeEEEEEcccchhchHHHHHH
Q 042007 606 RFEKVCEAPAPAKPNRGNLMRMETKSAANNANFEQIQASFPKILIKGPYGAPAQDYKNYDILLLIGLGIGATPFISIIKD 685 (844)
Q Consensus 606 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IdGPyG~~~~~~~~~~~vvlVagGiGITp~lsil~~ 685 (844)
+ ++| ..+.|.||+|.+.. ...++++|+||||+|++| +++.
T Consensus 872 l-----------~~G-------------------------d~v~v~GPLG~pF~-i~~~k~vLLVgGGVGiAp---Lak~ 911 (1028)
T PRK06567 872 L-----------SEN-------------------------EKVVLMGPTGSPLE-IPQNKKIVIVDFEVGNIG---LLKV 911 (1028)
T ss_pred C-----------CCC-------------------------CEEEEEcccCCCCC-CCCCCeEEEEEccccHHH---HHHH
Confidence 6 466 56999999998864 434679999999999996 4455
Q ss_pred HH
Q 042007 686 LL 687 (844)
Q Consensus 686 l~ 687 (844)
+.
T Consensus 912 Lk 913 (1028)
T PRK06567 912 LK 913 (1028)
T ss_pred HH
Confidence 43
No 97
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.01 E-value=2.6e-09 Score=104.37 Aligned_cols=107 Identities=19% Similarity=0.250 Sum_probs=90.1
Q ss_pred HHHHHHHHHhcccCCCCCCceeHHHHHHHHHHhccCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhhcccccccccc
Q 042007 135 FSVGVFEALARRRKVNTENGITKEEVRMFWEDMTKKDLDARLQIFFDMCDKNGDGILTEDEVREVIVLSASENKLSNLKE 214 (844)
Q Consensus 135 ~~~~lf~~l~~~~~~d~dG~I~f~EF~~~l~~~~~~~~~~~l~~~F~~fD~d~dG~It~eEl~~il~~~~~~~~l~~~~~ 214 (844)
...++|+.++ .|++|.|+-+|+..++..+....++++++.+++.+|.|+||.|+.+||..++.......... +
T Consensus 9 el~~~F~~fD----~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~---~ 81 (151)
T KOG0027|consen 9 ELKEAFQLFD----KDGDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDE---E 81 (151)
T ss_pred HHHHHHHHHC----CCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccc---c
Confidence 4567788555 57799999999999999999889999999999999999999999999999996543322111 1
Q ss_pred chHHHHHHHHHHhCCCCCCceeHHHHHHHHHcCC
Q 042007 215 NSSTYAALIMEKLDPDCKGYIEMWQLEILLRGMV 248 (844)
Q Consensus 215 ~~~e~~~~if~~~D~d~dG~It~~EF~~ll~~~~ 248 (844)
...+.+..+|+.+|.|++|+||.+||+.+|....
T Consensus 82 ~~~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg 115 (151)
T KOG0027|consen 82 ASSEELKEAFRVFDKDGDGFISASELKKVLTSLG 115 (151)
T ss_pred ccHHHHHHHHHHHccCCCCcCcHHHHHHHHHHhC
Confidence 2456889999999999999999999999998775
No 98
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.00 E-value=5.5e-09 Score=103.71 Aligned_cols=125 Identities=18% Similarity=0.259 Sum_probs=99.6
Q ss_pred HHHHHHccc--CCCCcCHHHHhhccCC----CCCHHHHHHHHHHHhcccCCCCCCceeHHHHHHHHHHhccCChHHHHHH
Q 042007 105 IERRFQQFA--VSGRLPKDKFGICVGM----GESTEFSVGVFEALARRRKVNTENGITKEEVRMFWEDMTKKDLDARLQI 178 (844)
Q Consensus 105 l~~~F~~ld--~dG~is~~eF~~~lg~----~~~~~~~~~lf~~l~~~~~~d~dG~I~f~EF~~~l~~~~~~~~~~~l~~ 178 (844)
+...|..-| ..|+|+.+|++++|.. .-+.+.+.-|..+++ .|.+|.|+|+||..+|..+. ..+.
T Consensus 59 ~~~~f~~vD~d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd----~~~~G~i~f~EF~~Lw~~i~------~Wr~ 128 (221)
T KOG0037|consen 59 LAGWFQSVDRDRSGRILAKELQQALSNGTWSPFSIETCRLMISMFD----RDNSGTIGFKEFKALWKYIN------QWRN 128 (221)
T ss_pred HHHHHHhhCccccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhc----CCCCCccCHHHHHHHHHHHH------HHHH
Confidence 444555555 7899999999999842 224456777777544 45699999999999998774 5788
Q ss_pred HHHHhccCCCCcccHHHHHHHHHhhhccccccccccchHHHHHHHHHHhCCCCCCceeHHHHHHHHHcC
Q 042007 179 FFDMCDKNGDGILTEDEVREVIVLSASENKLSNLKENSSTYAALIMEKLDPDCKGYIEMWQLEILLRGM 247 (844)
Q Consensus 179 ~F~~fD~d~dG~It~eEl~~il~~~~~~~~l~~~~~~~~e~~~~if~~~D~d~dG~It~~EF~~ll~~~ 247 (844)
+|+-||.|++|.|+..||++.+...+- .++ ++..+.+++.+|+.++|.|.||+|.+++...
T Consensus 129 vF~~~D~D~SG~I~~sEL~~Al~~~Gy--~Ls------pq~~~~lv~kyd~~~~g~i~FD~FI~ccv~L 189 (221)
T KOG0037|consen 129 VFRTYDRDRSGTIDSSELRQALTQLGY--RLS------PQFYNLLVRKYDRFGGGRIDFDDFIQCCVVL 189 (221)
T ss_pred HHHhcccCCCCcccHHHHHHHHHHcCc--CCC------HHHHHHHHHHhccccCCceeHHHHHHHHHHH
Confidence 999999999999999999999976432 233 5678889999999889999999999988654
No 99
>KOG3378 consensus Globins and related hemoproteins [Energy production and conversion]
Probab=98.98 E-value=6.5e-09 Score=105.43 Aligned_cols=124 Identities=20% Similarity=0.245 Sum_probs=85.8
Q ss_pred cccEEEEEEEEecCCEEEEEEeCCC-CC---ccCCCcEEEEEcCCCCCCCcc------CcccccCCCCCceEEEEEec-C
Q 042007 529 NHKVEVIKAVIYTGNVLALYMTKPP-GF---KYQSGMYLFVKCPDLSPFEWH------PFSITSAPGDYYLSVHIRTL-G 597 (844)
Q Consensus 529 ~~~~~i~~v~~~~~~v~~l~i~~p~-~~---~~~pGQyv~l~~p~~s~~e~H------PFTI~s~p~~~~l~l~Ir~~-G 597 (844)
+.+.+|......++||.++++..-. .| ...|||||.+..--++ +.| .+|..++...+.+.+.+|.. |
T Consensus 149 ~~~F~vT~~~~~sSDv~~~~~~PK~~~~~~~~~~PGQYvsV~~~~~~--~~~k~~~~~~~S~~~~t~rN~~R~sVr~~A~ 226 (385)
T KOG3378|consen 149 EVEFKVTELINESSDVKSVYLGPKDPAFRISHAHPGQYVSVLWEIPG--LSHKTLREYSLSNRVDTCRNQFRISVRRVAG 226 (385)
T ss_pred ccceeeeeeeccccceeEEEecCCCcceeeccCCCCceEEEeecCCc--cchhHHHHHHHhhhhhhhccceeEEEeehhc
Confidence 3566777777888999999985311 22 5789999999753322 333 24554555567899999876 4
Q ss_pred C-chHHHHHHHHhhcCCCCCCCCCCCcchhhhhhhhhccccccccccCcCEEEEeCccCCCCCC---CCCCCeEEEEEcc
Q 042007 598 D-WTTELKQRFEKVCEAPAPAKPNRGNLMRMETKSAANNANFEQIQASFPKILIKGPYGAPAQD---YKNYDILLLIGLG 673 (844)
Q Consensus 598 ~-~T~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IdGPyG~~~~~---~~~~~~vvlVagG 673 (844)
| .+..+++.+ +.| +.|-+.-|-|.+... ......+||.|||
T Consensus 227 G~VS~~~H~~~----------KVG-------------------------D~v~~S~PAG~F~~~r~~~~~N~PL~~~a~G 271 (385)
T KOG3378|consen 227 GVVSNFVHDNL----------KVG-------------------------DIVGVSPPAGNFVYKRSEENVNRPLLCFAGG 271 (385)
T ss_pred hhhHHHhhccc----------ccc-------------------------ceeeccCCCccceeehhhhccCCceEEecCC
Confidence 3 445555443 345 678889999988531 2234789999999
Q ss_pred cchhchHHHHHHHHHH
Q 042007 674 IGATPFISIIKDLLNH 689 (844)
Q Consensus 674 iGITp~lsil~~l~~~ 689 (844)
|||||+++|+...+..
T Consensus 272 iGiTPLi~iiE~~~~C 287 (385)
T KOG3378|consen 272 IGITPLIPIIETALLC 287 (385)
T ss_pred cCccccHHHHHHHHhc
Confidence 9999999999876643
No 100
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.85 E-value=1.4e-08 Score=106.48 Aligned_cols=132 Identities=21% Similarity=0.243 Sum_probs=96.1
Q ss_pred HHHHHHHHHHccc--CCCCcCHHHHhhccCCCCCHHH-HHHHHHHHhcccCCCCCCceeHHHHHHHHHHhccCCh-----
Q 042007 101 AWRSIERRFQQFA--VSGRLPKDKFGICVGMGESTEF-SVGVFEALARRRKVNTENGITKEEVRMFWEDMTKKDL----- 172 (844)
Q Consensus 101 ~~~~l~~~F~~ld--~dG~is~~eF~~~lg~~~~~~~-~~~lf~~l~~~~~~d~dG~I~f~EF~~~l~~~~~~~~----- 172 (844)
.+.+=+++|+.-| +||.++++||...+.-.+...+ ---+-..|.+.| .|+||.|+++||+.-|........
T Consensus 161 m~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~D-kn~DG~I~~eEfigd~~~~~~~~~epeWv 239 (325)
T KOG4223|consen 161 MIARDEERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDID-KNGDGKISLEEFIGDLYSHEGNEEEPEWV 239 (325)
T ss_pred HHHHHHHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcc-cCCCCceeHHHHHhHHhhccCCCCCcccc
Confidence 3555678999877 8999999999988833221111 111234466666 599999999999988865442211
Q ss_pred HHHHHHHHHHhccCCCCcccHHHHHHHHHhhhccccccccccchHHHHHHHHHHhCCCCCCceeHHHHH
Q 042007 173 DARLQIFFDMCDKNGDGILTEDEVREVIVLSASENKLSNLKENSSTYAALIMEKLDPDCKGYIEMWQLE 241 (844)
Q Consensus 173 ~~~l~~~F~~fD~d~dG~It~eEl~~il~~~~~~~~l~~~~~~~~e~~~~if~~~D~d~dG~It~~EF~ 241 (844)
..+-..+|..+|+|+||+++.+|++.-|.- .+ ...++.++.-++.+.|.|+||++|++|..
T Consensus 240 ~~Ere~F~~~~DknkDG~L~~dEl~~WI~P---~~-----~d~A~~EA~hL~~eaD~dkD~kLs~eEIl 300 (325)
T KOG4223|consen 240 LTEREQFFEFRDKNKDGKLDGDELLDWILP---SE-----QDHAKAEARHLLHEADEDKDGKLSKEEIL 300 (325)
T ss_pred cccHHHHHHHhhcCCCCccCHHHHhcccCC---CC-----ccHHHHHHHHHhhhhccCccccccHHHHh
Confidence 123458899999999999999999977721 11 34467889999999999999999999853
No 101
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.82 E-value=2.8e-08 Score=91.37 Aligned_cols=132 Identities=15% Similarity=0.254 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHcccCCCCcCHHHHhhcc---CCCCCHHHHHHHHHHHhcccCCC--CCCceeHHHHHHHHHHhccC---C
Q 042007 100 DAWRSIERRFQQFAVSGRLPKDKFGICV---GMGESTEFSVGVFEALARRRKVN--TENGITKEEVRMFWEDMTKK---D 171 (844)
Q Consensus 100 ~~~~~l~~~F~~ld~dG~is~~eF~~~l---g~~~~~~~~~~lf~~l~~~~~~d--~dG~I~f~EF~~~l~~~~~~---~ 171 (844)
++..+++..|+. .+||+|+......|+ |.+++...+.+... ..+. + +-..|+|++|+-++++++++ .
T Consensus 11 ~e~ke~F~lfD~-~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~---~~~~-~~~~~~rl~FE~fLpm~q~vaknk~q~ 85 (152)
T KOG0030|consen 11 EEFKEAFLLFDR-TGDGKISGSQVGDVLRALGQNPTNAEVLKVLG---QPKR-REMNVKRLDFEEFLPMYQQVAKNKDQG 85 (152)
T ss_pred HHHHHHHHHHhc-cCcccccHHHHHHHHHHhcCCCcHHHHHHHHc---Cccc-chhhhhhhhHHHHHHHHHHHHhccccC
Confidence 445555555544 289999999888776 66666554444433 3222 1 23679999999999888743 3
Q ss_pred hHHHHHHHHHHhccCCCCcccHHHHHHHHHhhhccccccccccchHHHHHHHHHHhCCCCCCceeHHHHHHHHH
Q 042007 172 LDARLQIFFDMCDKNGDGILTEDEVREVIVLSASENKLSNLKENSSTYAALIMEKLDPDCKGYIEMWQLEILLR 245 (844)
Q Consensus 172 ~~~~l~~~F~~fD~d~dG~It~eEl~~il~~~~~~~~l~~~~~~~~e~~~~if~~~D~d~dG~It~~EF~~ll~ 245 (844)
+.+..-.-.+.||++++|.|...||+.++..++ ++++ +++++.++.-. .|.+|.|+|++|.+.+.
T Consensus 86 t~edfvegLrvFDkeg~G~i~~aeLRhvLttlG--ekl~------eeEVe~Llag~-eD~nG~i~YE~fVk~i~ 150 (152)
T KOG0030|consen 86 TYEDFVEGLRVFDKEGNGTIMGAELRHVLTTLG--EKLT------EEEVEELLAGQ-EDSNGCINYEAFVKHIM 150 (152)
T ss_pred cHHHHHHHHHhhcccCCcceeHHHHHHHHHHHH--hhcc------HHHHHHHHccc-cccCCcCcHHHHHHHHh
Confidence 456666678999999999999999999997544 3444 56677666543 47889999999988664
No 102
>PTZ00183 centrin; Provisional
Probab=98.82 E-value=3.3e-08 Score=96.96 Aligned_cols=101 Identities=13% Similarity=0.229 Sum_probs=82.8
Q ss_pred HHHHHHHHhcccCCCCCCceeHHHHHHHHHHhccCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhhccccccccccc
Q 042007 136 SVGVFEALARRRKVNTENGITKEEVRMFWEDMTKKDLDARLQIFFDMCDKNGDGILTEDEVREVIVLSASENKLSNLKEN 215 (844)
Q Consensus 136 ~~~lf~~l~~~~~~d~dG~I~f~EF~~~l~~~~~~~~~~~l~~~F~~fD~d~dG~It~eEl~~il~~~~~~~~l~~~~~~ 215 (844)
..++|..++ .|++|.|+++||..++..+......+.+..+|..+|.|++|.|+.+||..++..... ...
T Consensus 19 ~~~~F~~~D----~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~-------~~~ 87 (158)
T PTZ00183 19 IREAFDLFD----TDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLG-------ERD 87 (158)
T ss_pred HHHHHHHhC----CCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhc-------CCC
Confidence 455676544 577999999999999988765567788999999999999999999999988754221 112
Q ss_pred hHHHHHHHHHHhCCCCCCceeHHHHHHHHHcC
Q 042007 216 SSTYAALIMEKLDPDCKGYIEMWQLEILLRGM 247 (844)
Q Consensus 216 ~~e~~~~if~~~D~d~dG~It~~EF~~ll~~~ 247 (844)
.++.++.+|+.+|.|++|+|+.+||..++...
T Consensus 88 ~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~ 119 (158)
T PTZ00183 88 PREEILKAFRLFDDDKTGKISLKNLKRVAKEL 119 (158)
T ss_pred cHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHh
Confidence 34668899999999999999999999999754
No 103
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=98.80 E-value=1.2e-08 Score=89.61 Aligned_cols=68 Identities=18% Similarity=0.184 Sum_probs=56.2
Q ss_pred HHHHHHHHHhcc-CCCCcccHHHHHHHHHhhhccccccccccchHHHHHHHHHHhCCCCCCceeHHHHHHHHHcC
Q 042007 174 ARLQIFFDMCDK-NGDGILTEDEVREVIVLSASENKLSNLKENSSTYAALIMEKLDPDCKGYIEMWQLEILLRGM 247 (844)
Q Consensus 174 ~~l~~~F~~fD~-d~dG~It~eEl~~il~~~~~~~~l~~~~~~~~e~~~~if~~~D~d~dG~It~~EF~~ll~~~ 247 (844)
..|+.+|+.||+ |++|+|+.+||+.+++.... +.++ + .+.++.||+.+|.|+||.|+|+||..+|...
T Consensus 8 ~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg-~~ls---~--~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l 76 (89)
T cd05022 8 ETLVSNFHKASVKGGKESLTASEFQELLTQQLP-HLLK---D--VEGLEEKMKNLDVNQDSKLSFEEFWELIGEL 76 (89)
T ss_pred HHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhh-hhcc---C--HHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 368889999999 99999999999999975221 2232 1 1679999999999999999999999999654
No 104
>PLN02964 phosphatidylserine decarboxylase
Probab=98.77 E-value=3.3e-08 Score=115.57 Aligned_cols=99 Identities=15% Similarity=0.241 Sum_probs=80.1
Q ss_pred hHHHHHHHHHHHccc--CCCCcCHHHHhhccC-CCCCHH---HHHHHHHHHhcccCCCCCCceeHHHHHHHHHHhccCCh
Q 042007 99 NDAWRSIERRFQQFA--VSGRLPKDKFGICVG-MGESTE---FSVGVFEALARRRKVNTENGITKEEVRMFWEDMTKKDL 172 (844)
Q Consensus 99 ~~~~~~l~~~F~~ld--~dG~is~~eF~~~lg-~~~~~~---~~~~lf~~l~~~~~~d~dG~I~f~EF~~~l~~~~~~~~ 172 (844)
..+.+++.+.|+.+| +||++ ...+-..+| ...+.. +++++|+.++ .|+||.|+|+||+.++..+.....
T Consensus 139 ~kqi~elkeaF~lfD~dgdG~i-Lg~ilrslG~~~pte~e~~fi~~mf~~~D----~DgdG~IdfdEFl~lL~~lg~~~s 213 (644)
T PLN02964 139 TQEPESACESFDLLDPSSSNKV-VGSIFVSCSIEDPVETERSFARRILAIVD----YDEDGQLSFSEFSDLIKAFGNLVA 213 (644)
T ss_pred HHHHHHHHHHHHHHCCCCCCcC-HHHHHHHhCCCCCCHHHHHHHHHHHHHhC----CCCCCeEcHHHHHHHHHHhccCCC
Confidence 356788888888888 67887 455555556 233333 4788888655 577999999999999998877788
Q ss_pred HHHHHHHHHHhccCCCCcccHHHHHHHHHh
Q 042007 173 DARLQIFFDMCDKNGDGILTEDEVREVIVL 202 (844)
Q Consensus 173 ~~~l~~~F~~fD~d~dG~It~eEl~~il~~ 202 (844)
+++++.+|+.||+|+||+|+.+||++++..
T Consensus 214 eEEL~eaFk~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 214 ANKKEELFKAADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred HHHHHHHHHHhCCCCCCcCCHHHHHHHHHh
Confidence 999999999999999999999999999965
No 105
>PTZ00184 calmodulin; Provisional
Probab=98.75 E-value=8.1e-08 Score=92.96 Aligned_cols=101 Identities=17% Similarity=0.280 Sum_probs=82.4
Q ss_pred HHHHHHHHhcccCCCCCCceeHHHHHHHHHHhccCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhhccccccccccc
Q 042007 136 SVGVFEALARRRKVNTENGITKEEVRMFWEDMTKKDLDARLQIFFDMCDKNGDGILTEDEVREVIVLSASENKLSNLKEN 215 (844)
Q Consensus 136 ~~~lf~~l~~~~~~d~dG~I~f~EF~~~l~~~~~~~~~~~l~~~F~~fD~d~dG~It~eEl~~il~~~~~~~~l~~~~~~ 215 (844)
..+.|..++ .|++|.|+++||..++..+.....++.++.+|+.+|.+++|.|+.+||..++...... ..
T Consensus 13 ~~~~F~~~D----~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~-------~~ 81 (149)
T PTZ00184 13 FKEAFSLFD----KDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKD-------TD 81 (149)
T ss_pred HHHHHHHHc----CCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccC-------Cc
Confidence 445566544 5779999999999999887766667899999999999999999999999988543221 12
Q ss_pred hHHHHHHHHHHhCCCCCCceeHHHHHHHHHcC
Q 042007 216 SSTYAALIMEKLDPDCKGYIEMWQLEILLRGM 247 (844)
Q Consensus 216 ~~e~~~~if~~~D~d~dG~It~~EF~~ll~~~ 247 (844)
.++.+..+|+.+|.|++|+|+.+||..++...
T Consensus 82 ~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~ 113 (149)
T PTZ00184 82 SEEEIKEAFKVFDRDGNGFISAAELRHVMTNL 113 (149)
T ss_pred HHHHHHHHHHhhCCCCCCeEeHHHHHHHHHHH
Confidence 34567889999999999999999999999764
No 106
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=98.75 E-value=6.6e-08 Score=93.38 Aligned_cols=101 Identities=16% Similarity=0.269 Sum_probs=85.3
Q ss_pred HHHHHHHHhcccCCCCCCceeHHHHHHHHHHhccCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhhccccccccccc
Q 042007 136 SVGVFEALARRRKVNTENGITKEEVRMFWEDMTKKDLDARLQIFFDMCDKNGDGILTEDEVREVIVLSASENKLSNLKEN 215 (844)
Q Consensus 136 ~~~lf~~l~~~~~~d~dG~I~f~EF~~~l~~~~~~~~~~~l~~~F~~fD~d~dG~It~eEl~~il~~~~~~~~l~~~~~~ 215 (844)
..+.|..++ .|+||.|+..|+..++..+....+++.+..+|..+|. ++|.|+.+||-.+|..... ...
T Consensus 22 lkeaF~l~D----~d~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~-------~~~ 89 (160)
T COG5126 22 LKEAFQLFD----RDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLK-------RGD 89 (160)
T ss_pred HHHHHHHhC----cCCCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhc-------cCC
Confidence 445566333 5779999999999999988889999999999999999 9999999999999854322 223
Q ss_pred hHHHHHHHHHHhCCCCCCceeHHHHHHHHHcCC
Q 042007 216 SSTYAALIMEKLDPDCKGYIEMWQLEILLRGMV 248 (844)
Q Consensus 216 ~~e~~~~if~~~D~d~dG~It~~EF~~ll~~~~ 248 (844)
.+|.+..+|+.+|.|+||+|+..|+..+++...
T Consensus 90 ~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lg 122 (160)
T COG5126 90 KEEELREAFKLFDKDHDGYISIGELRRVLKSLG 122 (160)
T ss_pred cHHHHHHHHHHhCCCCCceecHHHHHHHHHhhc
Confidence 467888999999999999999999999998654
No 107
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=98.73 E-value=2.8e-08 Score=88.61 Aligned_cols=71 Identities=21% Similarity=0.362 Sum_probs=55.6
Q ss_pred HHHHHHHHHhc-cCCCC-cccHHHHHHHHHhhhccccccccccchHHHHHHHHHHhCCCCCCceeHHHHHHHHHcC
Q 042007 174 ARLQIFFDMCD-KNGDG-ILTEDEVREVIVLSASENKLSNLKENSSTYAALIMEKLDPDCKGYIEMWQLEILLRGM 247 (844)
Q Consensus 174 ~~l~~~F~~fD-~d~dG-~It~eEl~~il~~~~~~~~l~~~~~~~~e~~~~if~~~D~d~dG~It~~EF~~ll~~~ 247 (844)
..+..+|+.|| +|+|| +||.+||+++++.... ..+. ....++.++.||+++|.|+||.|+|+||..+|...
T Consensus 10 ~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~-~~~~--~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l 82 (93)
T cd05026 10 DTLIRIFHNYSGKEGDRYKLSKGELKELLQRELT-DFLS--SQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAAL 82 (93)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhH-Hhcc--cccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence 35778899999 78999 5999999999965321 1111 12245678999999999999999999999998643
No 108
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=98.68 E-value=1.4e-07 Score=88.97 Aligned_cols=105 Identities=16% Similarity=0.230 Sum_probs=87.7
Q ss_pred HHHHHHHHHHhcccCCCCCCceeHHHHHHHHHHhccCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhhccccccccc
Q 042007 134 EFSVGVFEALARRRKVNTENGITKEEVRMFWEDMTKKDLDARLQIFFDMCDKNGDGILTEDEVREVIVLSASENKLSNLK 213 (844)
Q Consensus 134 ~~~~~lf~~l~~~~~~d~dG~I~f~EF~~~l~~~~~~~~~~~l~~~F~~fD~d~dG~It~eEl~~il~~~~~~~~l~~~~ 213 (844)
...++.|+.++ .+++|.|+.+|+..++..++-....+++..+-.-+|+++.|+|+.++|+.++..... +
T Consensus 33 q~i~e~f~lfd----~~~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~-------e 101 (172)
T KOG0028|consen 33 QEIKEAFELFD----PDMAGKIDVEELKVAMRALGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLG-------E 101 (172)
T ss_pred hhHHHHHHhhc----cCCCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhhccCceechHHHHHHHHHHHh-------c
Confidence 34556677444 577999999999999988887777888888999999999999999999999864332 3
Q ss_pred cchHHHHHHHHHHhCCCCCCceeHHHHHHHHHcCCC
Q 042007 214 ENSSTYAALIMEKLDPDCKGYIEMWQLEILLRGMVN 249 (844)
Q Consensus 214 ~~~~e~~~~if~~~D~d~dG~It~~EF~~ll~~~~~ 249 (844)
....+.+..+|+.+|.|++|.|++.+|+.++.+...
T Consensus 102 ~dt~eEi~~afrl~D~D~~Gkis~~~lkrvakeLge 137 (172)
T KOG0028|consen 102 RDTKEEIKKAFRLFDDDKTGKISQRNLKRVAKELGE 137 (172)
T ss_pred cCcHHHHHHHHHcccccCCCCcCHHHHHHHHHHhCc
Confidence 336788999999999999999999999999987753
No 109
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=98.66 E-value=6.8e-08 Score=84.98 Aligned_cols=71 Identities=23% Similarity=0.300 Sum_probs=55.8
Q ss_pred HHHHHHHHHhc-cCCCC-cccHHHHHHHHHhhhccccccccccchHHHHHHHHHHhCCCCCCceeHHHHHHHHHcC
Q 042007 174 ARLQIFFDMCD-KNGDG-ILTEDEVREVIVLSASENKLSNLKENSSTYAALIMEKLDPDCKGYIEMWQLEILLRGM 247 (844)
Q Consensus 174 ~~l~~~F~~fD-~d~dG-~It~eEl~~il~~~~~~~~l~~~~~~~~e~~~~if~~~D~d~dG~It~~EF~~ll~~~ 247 (844)
..++.+|+.|| +|+|| +|+.+||+.+|+.... +-+. ....++.++.+|+++|.|+||.|+|+||..++...
T Consensus 8 ~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~-~~lg--~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~ 80 (88)
T cd05027 8 VALIDVFHQYSGREGDKHKLKKSELKELINNELS-HFLE--EIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMV 80 (88)
T ss_pred HHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhH-HHhc--CCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 36889999998 89999 6999999999975211 0011 11235679999999999999999999999988643
No 110
>KOG1158 consensus NADP/FAD dependent oxidoreductase [Energy production and conversion]
Probab=98.62 E-value=2.6e-07 Score=107.62 Aligned_cols=126 Identities=14% Similarity=0.280 Sum_probs=80.0
Q ss_pred CCCeEEEEEcccchhchHHHHHHHHHHhhhcCcchhhhcCCCCCCCcEEEEEEEeCCCChhhhHHHHHHHHhccCCCCeE
Q 042007 663 NYDILLLIGLGIGATPFISIIKDLLNHIKSHERDTEFLENGFKKGPERAYFYWVTREQGSFEWFKGVMDDIADHDDKNVI 742 (844)
Q Consensus 663 ~~~~vvlVagGiGITp~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~~v~l~W~~R~~~~~~wf~~~L~~l~~~~~~~~l 742 (844)
....++|||-|+||+||.++++......+++.. .... +.|+++||+.+...-|++++++..+. +...
T Consensus 490 p~~PiIMIGpGTGiAPFRgFlq~r~~~~~~~~~----------~~~~-~~Lf~GcR~~~~d~LY~eE~~~~~~~--~~l~ 556 (645)
T KOG1158|consen 490 PSTPIIMIGPGTGIAPFRGFLQERLFLKQQGPK----------FGGG-MWLFFGCRNSDEDYLYREEWEEYKKA--GILT 556 (645)
T ss_pred CCCcEEEEcCCCcchhhHHHHHHHHHhhhcCcc----------CCcc-eEEEEeCCCchHHHHHHHHHHHHHhc--Ccch
Confidence 346899999999999999999998877654321 2334 89999999999987899998887433 2233
Q ss_pred EEEEEEecccCCCChhHHHHHHHHHhhhhcCCccccccCcccccccCCChHHHHHHHHhhCCCCcEEEEEeCChh-HHHH
Q 042007 743 EMHNYLTSVYEEGDARSALIAMVQKLQHAKNGVDIVSESRIKTHFARPNWRKVFGQLATDHESSRIGVFYCGSAT-LTKT 821 (844)
Q Consensus 743 ~i~~ylT~~~~~~d~~~~~~~~~~~~~~~~~~~d~~sg~~~~~~~gRPd~~~v~~~~~~~~~~~~v~V~~CGP~~-m~~~ 821 (844)
++..-.++... .... ..|.. =|-.-++|. ++..+. ...+|+||+.. |.++
T Consensus 557 ~l~~A~SReq~---~~k~---YVQd~-------------------l~e~~d~v~-~~L~~~---~g~iYvCGd~~~Ma~d 607 (645)
T KOG1158|consen 557 RLDVAFSREQT---PKKI---YVQDR-------------------LREYADEVW-ELLKKE---GGHIYVCGDAKGMAKD 607 (645)
T ss_pred hheeeeeccCC---CCce---ehhhH-------------------HHHHHHHHH-HHHhcC---CcEEEEecCCccchHH
Confidence 34444454321 0000 00000 011112222 233222 23799999998 9999
Q ss_pred HHHHHHhhc
Q 042007 822 LKELCLEFS 830 (844)
Q Consensus 822 vr~~~~~~~ 830 (844)
|.++..+.-
T Consensus 608 V~~~L~~i~ 616 (645)
T KOG1158|consen 608 VQDALVRIL 616 (645)
T ss_pred HHHHHHHHH
Confidence 999987743
No 111
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=98.57 E-value=1.6e-07 Score=83.58 Aligned_cols=72 Identities=21% Similarity=0.369 Sum_probs=56.8
Q ss_pred HHHHHHHHHHhc-cCCCC-cccHHHHHHHHHhhhccccccccccchHHHHHHHHHHhCCCCCCceeHHHHHHHHHcC
Q 042007 173 DARLQIFFDMCD-KNGDG-ILTEDEVREVIVLSASENKLSNLKENSSTYAALIMEKLDPDCKGYIEMWQLEILLRGM 247 (844)
Q Consensus 173 ~~~l~~~F~~fD-~d~dG-~It~eEl~~il~~~~~~~~l~~~~~~~~e~~~~if~~~D~d~dG~It~~EF~~ll~~~ 247 (844)
.+.++.+|++|| +|++| +|+.+||+.+++.... ..++ ....++.++.+|+++|.|++|.|+|+||..++...
T Consensus 8 ~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg-~~~~--~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~ 81 (92)
T cd05025 8 METLINVFHAHSGKEGDKYKLSKKELKDLLQTELS-DFLD--AQKDADAVDKIMKELDENGDGEVDFQEFVVLVAAL 81 (92)
T ss_pred HHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHH-HHcc--CCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHH
Confidence 467999999997 99999 5999999999964221 1111 11235678999999999999999999999998754
No 112
>COG0369 CysJ Sulfite reductase, alpha subunit (flavoprotein) [Inorganic ion transport and metabolism]
Probab=98.57 E-value=1e-06 Score=102.84 Aligned_cols=173 Identities=14% Similarity=0.205 Sum_probs=106.3
Q ss_pred CccCcccccCCCC--CceEEEEEec----------CCchHHHHHHHHhhcCCCCCCCCCCCcchhhhhhhhhcccccccc
Q 042007 574 EWHPFSITSAPGD--YYLSVHIRTL----------GDWTTELKQRFEKVCEAPAPAKPNRGNLMRMETKSAANNANFEQI 641 (844)
Q Consensus 574 e~HPFTI~s~p~~--~~l~l~Ir~~----------G~~T~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 641 (844)
..+=|||+|+|.. +.+.+.|.+. |..|..|.++. ..|
T Consensus 372 kPR~YSIsSs~~~~~~~vhltV~vV~y~~~~~~r~GvcS~~L~~~~----------~~g--------------------- 420 (587)
T COG0369 372 KPRLYSIASSPGVSPDEVHLTVGVVRYQAEGRERYGVCSGYLADLL----------EEG--------------------- 420 (587)
T ss_pred CCeeeEeccCCCCCCCeEEEEEEEEEeccCCCcccccchHHHHhhh----------cCC---------------------
Confidence 4567999999964 5566666543 44566666653 123
Q ss_pred ccCcCEEEEeCccC-CCCCCCCCCCeEEEEEcccchhchHHHHHHHHHHhhhcCcchhhhcCCCCCCCcEEEEEEEeCCC
Q 042007 642 QASFPKILIKGPYG-APAQDYKNYDILLLIGLGIGATPFISIIKDLLNHIKSHERDTEFLENGFKKGPERAYFYWVTREQ 720 (844)
Q Consensus 642 ~~~~~~v~IdGPyG-~~~~~~~~~~~vvlVagGiGITp~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~~v~l~W~~R~~ 720 (844)
..+.|-..-+ .+..+...-..++|||.|+||+||.++++.-..+. ...++.|++++|++
T Consensus 421 ----~~i~v~v~~n~nf~lp~~~~~PiIMIG~GTGIAPFRafvq~r~~~~----------------~~gk~wLfFG~R~~ 480 (587)
T COG0369 421 ----DTIPVFVQPNKNFRLPEDPETPIIMIGPGTGIAPFRAFVQERAANG----------------AEGKNWLFFGCRHF 480 (587)
T ss_pred ----CeEEEEeccCCccccCCCCCCceEEEcCCCCchhHHHHHHHHHhcc----------------ccCceEEEecCCCC
Confidence 2444544444 33222223378999999999999999999876553 22379999999995
Q ss_pred ChhhhHHHHHHHHhccCCCCeEEEEEEEecccCCCChhHHHHHHHHHhhhhcCCccccccCcccccccCCChHHHHHHHH
Q 042007 721 GSFEWFKGVMDDIADHDDKNVIEMHNYLTSVYEEGDARSALIAMVQKLQHAKNGVDIVSESRIKTHFARPNWRKVFGQLA 800 (844)
Q Consensus 721 ~~~~wf~~~L~~l~~~~~~~~l~i~~ylT~~~~~~d~~~~~~~~~~~~~~~~~~~d~~sg~~~~~~~gRPd~~~v~~~~~ 800 (844)
+.=..|++++++..+. +....+....++..++. . ..| | .=|-+ .+.+.+..
T Consensus 481 ~~DfLY~~Ewe~~~~~--G~~~~l~~AfSRdq~~K---i----YVQ---d----------------~lre~-~del~~~l 531 (587)
T COG0369 481 TEDFLYQEEWEEYLKD--GVLTRLDLAFSRDQEEK---I----YVQ---D----------------RLREQ-ADELWEWL 531 (587)
T ss_pred ccchhhHHHHHHHHhc--CCceeEEEEEeecCCCC---c----cHH---H----------------HHHHh-HHHHHHHH
Confidence 4433788888875442 22456666666643210 0 000 0 00111 12333333
Q ss_pred hhCCCCcEEEEEeC-ChhHHHHHHHHHHhhc
Q 042007 801 TDHESSRIGVFYCG-SATLTKTLKELCLEFS 830 (844)
Q Consensus 801 ~~~~~~~v~V~~CG-P~~m~~~vr~~~~~~~ 830 (844)
++- ..+|+|| +..|.++|.++..+.-
T Consensus 532 ~~g----a~~YVCGd~~~Ma~dV~~AL~~il 558 (587)
T COG0369 532 EEG----AHIYVCGDAKGMAKDVEEALLDIL 558 (587)
T ss_pred HCC----CEEEEeCCCccchHHHHHHHHHHH
Confidence 331 4799999 9999999999988843
No 113
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.56 E-value=1.5e-07 Score=84.10 Aligned_cols=72 Identities=19% Similarity=0.325 Sum_probs=56.6
Q ss_pred HHHHHHHHHHhcc-CC-CCcccHHHHHHHHHhhhccccccccccchHHHHHHHHHHhCCCCCCceeHHHHHHHHHcC
Q 042007 173 DARLQIFFDMCDK-NG-DGILTEDEVREVIVLSASENKLSNLKENSSTYAALIMEKLDPDCKGYIEMWQLEILLRGM 247 (844)
Q Consensus 173 ~~~l~~~F~~fD~-d~-dG~It~eEl~~il~~~~~~~~l~~~~~~~~e~~~~if~~~D~d~dG~It~~EF~~ll~~~ 247 (844)
...++.+|+.||. |+ ||+|+.+||+.+++.... ..++ ....++.++.+|+++|.|++|.|+|+||..+|...
T Consensus 7 ~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g-~~lg--~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~ 80 (94)
T cd05031 7 MESLILTFHRYAGKDGDKNTLSRKELKKLMEKELS-EFLK--NQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGL 80 (94)
T ss_pred HHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhH-HHhh--ccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 4578999999997 97 699999999999964221 1111 12235678999999999999999999999998754
No 114
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=98.56 E-value=1.6e-07 Score=84.35 Aligned_cols=86 Identities=22% Similarity=0.292 Sum_probs=65.7
Q ss_pred hHHHHHHHHHHhccCCCCcccHHHHHHHHHhhhccccccccccchHHHHHHHHHHhCCCCCCceeHHHHHHHHHcCCCCC
Q 042007 172 LDARLQIFFDMCDKNGDGILTEDEVREVIVLSASENKLSNLKENSSTYAALIMEKLDPDCKGYIEMWQLEILLRGMVNEE 251 (844)
Q Consensus 172 ~~~~l~~~F~~fD~d~dG~It~eEl~~il~~~~~~~~l~~~~~~~~e~~~~if~~~D~d~dG~It~~EF~~ll~~~~~~~ 251 (844)
..++++.+|+.||+|++|+|+.+|++++++.. ++ .++.++.||+.+|.+++|+|+|+||..+|.....-
T Consensus 8 ~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~----~~------~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~~~~- 76 (96)
T smart00027 8 DKAKYEQIFRSLDKNQDGTVTGAQAKPILLKS----GL------PQTLLAKIWNLADIDNDGELDKDEFALAMHLIYRK- 76 (96)
T ss_pred HHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHc----CC------CHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHHH-
Confidence 34579999999999999999999999999652 12 24568889999999999999999999998755321
Q ss_pred CCCCCccccchhhcccCC
Q 042007 252 GPKMNNRTSTLTKAMIPQ 269 (844)
Q Consensus 252 ~~~~~l~~~~~~~~~~~~ 269 (844)
...+.+ +..+.++|.|.
T Consensus 77 ~~g~~~-~~~~~~~~~~~ 93 (96)
T smart00027 77 LNGYPI-PASLPPSLIPP 93 (96)
T ss_pred HcCCCC-CccCCHhhcCC
Confidence 123445 55566666553
No 115
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.52 E-value=2.4e-07 Score=85.55 Aligned_cols=62 Identities=21% Similarity=0.233 Sum_probs=53.5
Q ss_pred hHHHHHHHHHHhccCCCCcccHHHHHHHHHhhhccccccccccchHHHHHHHHHHhCCCCCCceeHHHHHHHHH
Q 042007 172 LDARLQIFFDMCDKNGDGILTEDEVREVIVLSASENKLSNLKENSSTYAALIMEKLDPDCKGYIEMWQLEILLR 245 (844)
Q Consensus 172 ~~~~l~~~F~~fD~d~dG~It~eEl~~il~~~~~~~~l~~~~~~~~e~~~~if~~~D~d~dG~It~~EF~~ll~ 245 (844)
-.+++.++|..+|+|+||+||.+||+.+. . ...+..+..+|+.+|.|+||+||++||...+.
T Consensus 46 ~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~-l-----------~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl~ 107 (116)
T cd00252 46 CKDPVGWMFNQLDGNYDGKLSHHELAPIR-L-----------DPNEHCIKPFFESCDLDKDGSISLDEWCYCFI 107 (116)
T ss_pred HHHHHHHHHHHHCCCCCCcCCHHHHHHHH-c-----------cchHHHHHHHHHHHCCCCCCCCCHHHHHHHHh
Confidence 45789999999999999999999999876 1 11255678899999999999999999999994
No 116
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.52 E-value=3.7e-07 Score=95.92 Aligned_cols=142 Identities=16% Similarity=0.105 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHccc--CCCCcCHHHHhhccCCCCCHHHHHHHHHHHhcccCCCCCCceeHHHHHHHHHHhc-------cC
Q 042007 100 DAWRSIERRFQQFA--VSGRLPKDKFGICVGMGESTEFSVGVFEALARRRKVNTENGITKEEVRMFWEDMT-------KK 170 (844)
Q Consensus 100 ~~~~~l~~~F~~ld--~dG~is~~eF~~~lg~~~~~~~~~~lf~~l~~~~~~d~dG~I~f~EF~~~l~~~~-------~~ 170 (844)
+.-+++.+.|.++| +||.|+..|+..-+.....+...++.-+.+...+ .|.||.|+++|+........ +.
T Consensus 74 e~~~rl~~l~~~iD~~~Dgfv~~~El~~wi~~s~k~~v~~~~~~~~~~~d-~~~Dg~i~~eey~~~~~~~~~~~~~~~d~ 152 (325)
T KOG4223|consen 74 ESQERLGKLVPKIDSDSDGFVTESELKAWIMQSQKKYVVEEAARRWDEYD-KNKDGFITWEEYLPQTYGRVDLPDEFPDE 152 (325)
T ss_pred hhHHHHHHHHhhhcCCCCCceeHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCccceeeHHHhhhhhhhcccCccccccc
Confidence 35577888888888 8999999999887733322333444444455555 37899999999998876431 11
Q ss_pred -C--hH----HHHHHHHHHhccCCCCcccHHHHHHHHHhhhccccccccccchHHHHHHHHHHhCCCCCCceeHHHHHHH
Q 042007 171 -D--LD----ARLQIFFDMCDKNGDGILTEDEVREVIVLSASENKLSNLKENSSTYAALIMEKLDPDCKGYIEMWQLEIL 243 (844)
Q Consensus 171 -~--~~----~~l~~~F~~fD~d~dG~It~eEl~~il~~~~~~~~l~~~~~~~~e~~~~if~~~D~d~dG~It~~EF~~l 243 (844)
+ .. .+=+.-|+.-|.|+||.+|.+||-.++-- . . .+...+=.+...++..|+|+||+|+++||..=
T Consensus 153 e~~~~~~km~~rDe~rFk~AD~d~dg~lt~EEF~aFLHP--E----e-~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd 225 (325)
T KOG4223|consen 153 EDNEEYKKMIARDEERFKAADQDGDGSLTLEEFTAFLHP--E----E-HPHMKDIVIAETLEDIDKNGDGKISLEEFIGD 225 (325)
T ss_pred hhcHHHHHHHHHHHHHHhhcccCCCCcccHHHHHhccCh--h----h-cchHHHHHHHHHHhhcccCCCCceeHHHHHhH
Confidence 0 01 12345699999999999999999988821 0 0 12222345677899999999999999999988
Q ss_pred HHcCCC
Q 042007 244 LRGMVN 249 (844)
Q Consensus 244 l~~~~~ 249 (844)
|-.+..
T Consensus 226 ~~~~~~ 231 (325)
T KOG4223|consen 226 LYSHEG 231 (325)
T ss_pred HhhccC
Confidence 876653
No 117
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=98.46 E-value=4.6e-07 Score=75.18 Aligned_cols=61 Identities=26% Similarity=0.401 Sum_probs=52.1
Q ss_pred HHHHHHhccCCCCcccHHHHHHHHHhhhccccccccccchHHHHHHHHHHhCCCCCCceeHHHHHHHHHcC
Q 042007 177 QIFFDMCDKNGDGILTEDEVREVIVLSASENKLSNLKENSSTYAALIMEKLDPDCKGYIEMWQLEILLRGM 247 (844)
Q Consensus 177 ~~~F~~fD~d~dG~It~eEl~~il~~~~~~~~l~~~~~~~~e~~~~if~~~D~d~dG~It~~EF~~ll~~~ 247 (844)
+.+|+.+|.|++|+|+.+|++++++... . .++.++.+|+.+|.|++|.|+|+||..+|...
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g----~------~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~ 62 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSG----L------PRSVLAQIWDLADTDKDGKLDKEEFAIAMHLI 62 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcC----C------CHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHH
Confidence 5689999999999999999999996421 1 35568899999999999999999999988643
No 118
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=98.45 E-value=5.2e-07 Score=79.59 Aligned_cols=72 Identities=17% Similarity=0.279 Sum_probs=57.1
Q ss_pred HHHHHHHHHHhcc--CCCCcccHHHHHHHHHhhhccccccccccchHHHHHHHHHHhCCCCCCceeHHHHHHHHHcC
Q 042007 173 DARLQIFFDMCDK--NGDGILTEDEVREVIVLSASENKLSNLKENSSTYAALIMEKLDPDCKGYIEMWQLEILLRGM 247 (844)
Q Consensus 173 ~~~l~~~F~~fD~--d~dG~It~eEl~~il~~~~~~~~l~~~~~~~~e~~~~if~~~D~d~dG~It~~EF~~ll~~~ 247 (844)
.+.++.+|.+||+ |++|+|+.+||+.+++.... ...+ ....++.++.||+++|.|++|.|+|+||..+|...
T Consensus 7 ~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g-~~~~--~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 7 IETIIDVFHKYSGKEGDKDTLSKKELKELLETELP-NFLK--NQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhh-hhcc--CCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHH
Confidence 3568899999999 89999999999999964221 1111 12346678899999999999999999999988643
No 119
>PLN02964 phosphatidylserine decarboxylase
Probab=98.44 E-value=1.3e-06 Score=102.31 Aligned_cols=118 Identities=16% Similarity=0.222 Sum_probs=83.2
Q ss_pred CCCcCHHHHhhccCC-----C-CCHHHHHHHHHHHhcccCCCCCCceeHHHHHHHHHHhc-cCChHHH---HHHHHHHhc
Q 042007 115 SGRLPKDKFGICVGM-----G-ESTEFSVGVFEALARRRKVNTENGITKEEVRMFWEDMT-KKDLDAR---LQIFFDMCD 184 (844)
Q Consensus 115 dG~is~~eF~~~lg~-----~-~~~~~~~~lf~~l~~~~~~d~dG~I~f~EF~~~l~~~~-~~~~~~~---l~~~F~~fD 184 (844)
..+++.+++...... . .+.+...+.|+.+| .|+||.| +-.++..+. ....+++ ++.+|+.+|
T Consensus 118 ~~~~s~n~lv~~~e~~~t~f~~kqi~elkeaF~lfD----~dgdG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D 189 (644)
T PLN02964 118 TNRLSKNTLVGYCELDLFDFVTQEPESACESFDLLD----PSSSNKV----VGSIFVSCSIEDPVETERSFARRILAIVD 189 (644)
T ss_pred cCCCCHHHhhhheeecHhhccHHHHHHHHHHHHHHC----CCCCCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhC
Confidence 456677666543322 1 11223455566444 5779986 444555555 2334443 899999999
Q ss_pred cCCCCcccHHHHHHHHHhhhccccccccccchHHHHHHHHHHhCCCCCCceeHHHHHHHHHcCC
Q 042007 185 KNGDGILTEDEVREVIVLSASENKLSNLKENSSTYAALIMEKLDPDCKGYIEMWQLEILLRGMV 248 (844)
Q Consensus 185 ~d~dG~It~eEl~~il~~~~~~~~l~~~~~~~~e~~~~if~~~D~d~dG~It~~EF~~ll~~~~ 248 (844)
.|+||.|+.+||.+++.... +...++.+..+|+.+|+|++|+|+++||..+|...+
T Consensus 190 ~DgdG~IdfdEFl~lL~~lg--------~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~~~ 245 (644)
T PLN02964 190 YDEDGQLSFSEFSDLIKAFG--------NLVAANKKEELFKAADLNGDGVVTIDELAALLALQQ 245 (644)
T ss_pred CCCCCeEcHHHHHHHHHHhc--------cCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHhcc
Confidence 99999999999999996422 122466789999999999999999999999998764
No 120
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=98.43 E-value=3.4e-07 Score=95.21 Aligned_cols=137 Identities=10% Similarity=0.047 Sum_probs=109.9
Q ss_pred HHHHHHHHHHHccc------CCCCcCHHHHhhccCCCCCHHHHHHHHHHHhcccCCCCCCceeHHHHHHHHHHhcc-CCh
Q 042007 100 DAWRSIERRFQQFA------VSGRLPKDKFGICVGMGESTEFSVGVFEALARRRKVNTENGITKEEVRMFWEDMTK-KDL 172 (844)
Q Consensus 100 ~~~~~l~~~F~~ld------~dG~is~~eF~~~lg~~~~~~~~~~lf~~l~~~~~~d~dG~I~f~EF~~~l~~~~~-~~~ 172 (844)
..|..|.+..+.+. +.++|...||...+....+ .....+|..++ -+++|.+||.|.+..++.++. ...
T Consensus 220 L~~~gl~k~ld~y~~var~~kg~~igi~efa~~l~vpvs-d~l~~~f~LFd----e~~tg~~D~re~v~~lavlc~p~~t 294 (412)
T KOG4666|consen 220 LPLVGLIKKLDGYVYVAREAKGPDIGIVEFAVNLRVPVS-DKLAPTFMLFD----EGTTGNGDYRETVKTLAVLCGPPVT 294 (412)
T ss_pred CChHHHHHHHhhHHHHHHhccCCCcceeEeeeeeecchh-hhhhhhhheec----CCCCCcccHHHHhhhheeeeCCCCc
Confidence 34666676666543 7899999999999987754 44666788444 356999999999999988774 456
Q ss_pred HHHHHHHHHHhccCCCCcccHHHHHHHHHhhhccccccccccchHHHHHHHHHHhCCCCCCceeHHHHHHHHHcCCCC
Q 042007 173 DARLQIFFDMCDKNGDGILTEDEVREVIVLSASENKLSNLKENSSTYAALIMEKLDPDCKGYIEMWQLEILLRGMVNE 250 (844)
Q Consensus 173 ~~~l~~~F~~fD~d~dG~It~eEl~~il~~~~~~~~l~~~~~~~~e~~~~if~~~D~d~dG~It~~EF~~ll~~~~~~ 250 (844)
.+-++.+|++||.+.||.++.++|.-+++....-..+. +..+|.+.|...||+|++++|++++..+|++
T Consensus 295 ~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~lgv~~l~---------v~~lf~~i~q~d~~ki~~~~f~~fa~~~p~~ 363 (412)
T KOG4666|consen 295 PVIIQYAFKRFSVAEDGISGEHILSLILQVVLGVEVLR---------VPVLFPSIEQKDDPKIYASNFRKFAATEPNL 363 (412)
T ss_pred HHHHHHHHHhcccccccccchHHHHHHHHHhcCcceee---------ccccchhhhcccCcceeHHHHHHHHHhCchh
Confidence 88999999999999999999999999887644333332 4468999999999999999999999999876
No 121
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=98.43 E-value=1.7e-06 Score=86.24 Aligned_cols=126 Identities=14% Similarity=0.118 Sum_probs=101.3
Q ss_pred CchHHHHHHHHHHHcccCCCCcCHHHHhhccCCCCCHHHHHHHHHHHhcccCCCCCCceeHHHHHHHHHHhccCChHHHH
Q 042007 97 KENDAWRSIERRFQQFAVSGRLPKDKFGICVGMGESTEFSVGVFEALARRRKVNTENGITKEEVRMFWEDMTKKDLDARL 176 (844)
Q Consensus 97 ~~~~~~~~l~~~F~~ld~dG~is~~eF~~~lg~~~~~~~~~~lf~~l~~~~~~d~dG~I~f~EF~~~l~~~~~~~~~~~l 176 (844)
...+-..-+-..|+. |++|+|..+||.++...- .--..+|...| .|++|.|+..|+..++..+.-...++-+
T Consensus 91 Fs~~TcrlmI~mfd~-~~~G~i~f~EF~~Lw~~i---~~Wr~vF~~~D----~D~SG~I~~sEL~~Al~~~Gy~Lspq~~ 162 (221)
T KOG0037|consen 91 FSIETCRLMISMFDR-DNSGTIGFKEFKALWKYI---NQWRNVFRTYD----RDRSGTIDSSELRQALTQLGYRLSPQFY 162 (221)
T ss_pred CCHHHHHHHHHHhcC-CCCCccCHHHHHHHHHHH---HHHHHHHHhcc----cCCCCcccHHHHHHHHHHcCcCCCHHHH
Confidence 344556666777776 689999999999887432 12456777555 5789999999999999999988999999
Q ss_pred HHHHHHhccCCCCcccHHHHHHHHHhhhccccccccccchHHHHHHHHHHhCCCCCCc--eeHHHHHHHH
Q 042007 177 QIFFDMCDKNGDGILTEDEVREVIVLSASENKLSNLKENSSTYAALIMEKLDPDCKGY--IEMWQLEILL 244 (844)
Q Consensus 177 ~~~F~~fD~d~dG~It~eEl~~il~~~~~~~~l~~~~~~~~e~~~~if~~~D~d~dG~--It~~EF~~ll 244 (844)
+.+++.||..++|.|..++|-+.+..+. .+-++|++.|.+.+|. |+|+||..+.
T Consensus 163 ~~lv~kyd~~~~g~i~FD~FI~ccv~L~--------------~lt~~Fr~~D~~q~G~i~~~y~dfl~~t 218 (221)
T KOG0037|consen 163 NLLVRKYDRFGGGRIDFDDFIQCCVVLQ--------------RLTEAFRRRDTAQQGSITISYDDFLQMT 218 (221)
T ss_pred HHHHHHhccccCCceeHHHHHHHHHHHH--------------HHHHHHHHhccccceeEEEeHHHHHHHh
Confidence 9999999999999999999998885322 1235899999999997 5689998765
No 122
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.41 E-value=7.1e-07 Score=78.67 Aligned_cols=71 Identities=20% Similarity=0.321 Sum_probs=54.8
Q ss_pred HHHHHHHHH-hccCCCC-cccHHHHHHHHHhhhccccccccccchHHHHHHHHHHhCCCCCCceeHHHHHHHHHcC
Q 042007 174 ARLQIFFDM-CDKNGDG-ILTEDEVREVIVLSASENKLSNLKENSSTYAALIMEKLDPDCKGYIEMWQLEILLRGM 247 (844)
Q Consensus 174 ~~l~~~F~~-fD~d~dG-~It~eEl~~il~~~~~~~~l~~~~~~~~e~~~~if~~~D~d~dG~It~~EF~~ll~~~ 247 (844)
..+..+|.. +|+|++| +||.+||+.++...... -+. ....++.++.+|+++|.|+||.|+|+||..+|...
T Consensus 9 ~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~-~~~--~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 9 ESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELAS-FTK--NQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGL 81 (89)
T ss_pred HHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhH-hhc--CCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 467888999 7788987 99999999999653211 011 11235678899999999999999999999988643
No 123
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=98.40 E-value=6.2e-07 Score=74.37 Aligned_cols=61 Identities=23% Similarity=0.387 Sum_probs=50.6
Q ss_pred HHHHHHHHhcccCCCCCCceeHHHHHHHHHHhccC----ChHHHHHHHHHHhccCCCCcccHHHHHHHH
Q 042007 136 SVGVFEALARRRKVNTENGITKEEVRMFWEDMTKK----DLDARLQIFFDMCDKNGDGILTEDEVREVI 200 (844)
Q Consensus 136 ~~~lf~~l~~~~~~d~dG~I~f~EF~~~l~~~~~~----~~~~~l~~~F~~fD~d~dG~It~eEl~~il 200 (844)
..++|+.++ .|+||.|+.+||..++..+... ..++.++.+|+.+|+|+||+|+.+||.+++
T Consensus 2 l~~~F~~~D----~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 2 LKEAFKKFD----KDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHS----TTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred HHHHHHHHc----CCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 456788666 6789999999999999887643 345677888999999999999999998764
No 124
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=98.39 E-value=9.4e-07 Score=77.75 Aligned_cols=68 Identities=19% Similarity=0.296 Sum_probs=53.9
Q ss_pred HHHHHHHHhcc-CC-CCcccHHHHHHHHHhhhccccccccccchHHHHHHHHHHhCCCCCCceeHHHHHHHHHcC
Q 042007 175 RLQIFFDMCDK-NG-DGILTEDEVREVIVLSASENKLSNLKENSSTYAALIMEKLDPDCKGYIEMWQLEILLRGM 247 (844)
Q Consensus 175 ~l~~~F~~fD~-d~-dG~It~eEl~~il~~~~~~~~l~~~~~~~~e~~~~if~~~D~d~dG~It~~EF~~ll~~~ 247 (844)
.+-.+|..||. |+ +|+|+.+||+++++.... +. +...++.++.+|+++|.|++|.|+|+||..+|...
T Consensus 11 ~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~---lg--~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l 80 (88)
T cd05029 11 LLVAIFHKYSGREGDKNTLSKKELKELIQKELT---IG--SKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGAL 80 (88)
T ss_pred HHHHHHHHHHccCCCCCEECHHHHHHHHHHHHh---cC--CCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 46678999998 77 899999999999963110 11 22346788999999999999999999999988643
No 125
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=98.39 E-value=2.9e-06 Score=84.94 Aligned_cols=105 Identities=18% Similarity=0.230 Sum_probs=83.7
Q ss_pred CHHHHHHHHHHHhcccCCCCCCceeHHHHHHHHHHhc-cCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhhcccccc
Q 042007 132 STEFSVGVFEALARRRKVNTENGITKEEVRMFWEDMT-KKDLDARLQIFFDMCDKNGDGILTEDEVREVIVLSASENKLS 210 (844)
Q Consensus 132 ~~~~~~~lf~~l~~~~~~d~dG~I~f~EF~~~l~~~~-~~~~~~~l~~~F~~fD~d~dG~It~eEl~~il~~~~~~~~l~ 210 (844)
++..+.+.++.+-.. -.+|.++.++|..+...+- .++.+.-.+.+|+.||+|+||.|+.+||-..+....
T Consensus 24 ~~~ei~~~Yr~Fk~~---cP~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~------ 94 (193)
T KOG0044|consen 24 SKKEIQQWYRGFKNE---CPSGRLTLEEFREIYASFFPDGDASKYAELVFRTFDKNKDGTIDFLEFICALSLTS------ 94 (193)
T ss_pred CHHHHHHHHHHhccc---CCCCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHc------
Confidence 445566677766542 2389999999999998876 477888899999999999999999999766664432
Q ss_pred ccccchHHHHHHHHHHhCCCCCCceeHHHHHHHHHcC
Q 042007 211 NLKENSSTYAALIMEKLDPDCKGYIEMWQLEILLRGM 247 (844)
Q Consensus 211 ~~~~~~~e~~~~if~~~D~d~dG~It~~EF~~ll~~~ 247 (844)
....+|.++-+|+.+|.|+||+|+.+|+.+++...
T Consensus 95 --rGt~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i 129 (193)
T KOG0044|consen 95 --RGTLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAI 129 (193)
T ss_pred --CCcHHHHhhhhheeecCCCCceEcHHHHHHHHHHH
Confidence 23356667778999999999999999999988744
No 126
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=98.38 E-value=9.6e-07 Score=96.32 Aligned_cols=148 Identities=18% Similarity=0.273 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHcccCCC--CcCHHHHhhc-cCCCCCHHHHHHHHHHHhcccCCCCCCceeHHHHHHHHHHhccCChHHHH
Q 042007 100 DAWRSIERRFQQFAVSG--RLPKDKFGIC-VGMGESTEFSVGVFEALARRRKVNTENGITKEEVRMFWEDMTKKDLDARL 176 (844)
Q Consensus 100 ~~~~~l~~~F~~ld~dG--~is~~eF~~~-lg~~~~~~~~~~lf~~l~~~~~~d~dG~I~f~EF~~~l~~~~~~~~~~~l 176 (844)
.++..++-.|...+.+| ..+.++|.+. +|+-....+-.++...+..-++..+||.|||+||..+-..++ .+|..-
T Consensus 33 ~eLr~if~~~as~e~~ge~~mt~edFv~~ylgL~~e~~~n~~~v~Lla~iaD~tKDglisf~eF~afe~~lC--~pDal~ 110 (694)
T KOG0751|consen 33 KELRSIFLKYASIEKNGESYMTPEDFVRRYLGLYNESNFNDKIVRLLASIADQTKDGLISFQEFRAFESVLC--APDALF 110 (694)
T ss_pred HHHHHHHHHHhHHhhccccccCHHHHHHHHHhhcccccCChHHHHHHHhhhhhcccccccHHHHHHHHhhcc--CchHHH
Confidence 34444444444433444 5888998544 565444444455555555444456799999999999887776 457889
Q ss_pred HHHHHHhccCCCCcccHHHHHHHHHhhhccccc---------------------------cccccchHHHHHHHHHHhCC
Q 042007 177 QIFFDMCDKNGDGILTEDEVREVIVLSASENKL---------------------------SNLKENSSTYAALIMEKLDP 229 (844)
Q Consensus 177 ~~~F~~fD~d~dG~It~eEl~~il~~~~~~~~l---------------------------~~~~~~~~e~~~~if~~~D~ 229 (844)
..+|+.||+.++|.+|.+++++++......++. ..+.+-.+|.+.+.|++-|+
T Consensus 111 ~~aFqlFDr~~~~~vs~~~~~~if~~t~l~~~~~f~~d~efI~~~Fg~~~~r~~ny~~f~Q~lh~~~~E~~~qafr~~d~ 190 (694)
T KOG0751|consen 111 EVAFQLFDRLGNGEVSFEDVADIFGQTNLHHHIPFNWDSEFIKLHFGDIRKRHLNYAEFTQFLHEFQLEHAEQAFREKDK 190 (694)
T ss_pred HHHHHHhcccCCCceehHHHHHHHhccccccCCCccCCcchHHHHhhhHHHHhccHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999643222211 11234467778999999999
Q ss_pred CCCCceeHHHHHHHHHcCCC
Q 042007 230 DCKGYIEMWQLEILLRGMVN 249 (844)
Q Consensus 230 d~dG~It~~EF~~ll~~~~~ 249 (844)
.++|.||--+|+.+|.+...
T Consensus 191 ~~ng~is~Ldfq~imvt~~~ 210 (694)
T KOG0751|consen 191 AKNGFISVLDFQDIMVTIRI 210 (694)
T ss_pred cCCCeeeeechHhhhhhhhh
Confidence 99999999999999987753
No 127
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=98.35 E-value=3e-06 Score=91.44 Aligned_cols=136 Identities=17% Similarity=0.248 Sum_probs=97.3
Q ss_pred HHHHHHHHHccc--CCCCcCHHHHhhcc----CCCC-CHHHHHHHHHHHhcccCCCCCCceeHHHHHHHHHH--hccC--
Q 042007 102 WRSIERRFQQFA--VSGRLPKDKFGICV----GMGE-STEFSVGVFEALARRRKVNTENGITKEEVRMFWED--MTKK-- 170 (844)
Q Consensus 102 ~~~l~~~F~~ld--~dG~is~~eF~~~l----g~~~-~~~~~~~lf~~l~~~~~~d~dG~I~f~EF~~~l~~--~~~~-- 170 (844)
-.+|.+.|+.+| +.|+|+....+.|+ |+.- -.....+ +.. .+.||.+.|.+-++.+.. +...
T Consensus 463 ~sdL~~eF~~~D~~ksG~lsis~Wa~~mE~i~~L~LPWr~L~~k----la~---~s~d~~v~Y~~~~~~l~~e~~~~ea~ 535 (631)
T KOG0377|consen 463 RSDLEDEFRKYDPKKSGKLSISHWAKCMENITGLNLPWRLLRPK----LAN---GSDDGKVEYKSTLDNLDTEVILEEAG 535 (631)
T ss_pred hhHHHHHHHhcChhhcCeeeHHHHHHHHHHHhcCCCcHHHhhhh----ccC---CCcCcceehHhHHHHhhhhhHHHHHH
Confidence 356788899999 89999999998887 4432 1222223 332 355889999888776632 1111
Q ss_pred --------ChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhhccccccccccchHHHHHHHHHHhCCCCCCceeHHHHHH
Q 042007 171 --------DLDARLQIFFDMCDKNGDGILTEDEVREVIVLSASENKLSNLKENSSTYAALIMEKLDPDCKGYIEMWQLEI 242 (844)
Q Consensus 171 --------~~~~~l~~~F~~fD~d~dG~It~eEl~~il~~~~~~~~l~~~~~~~~e~~~~if~~~D~d~dG~It~~EF~~ 242 (844)
.....|..+|+..|+|++|.||.+||+.+.+...+.-+.. ..++++.++-+.+|-|+||.|++.||.+
T Consensus 536 ~slvetLYr~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~----i~~~~i~~la~~mD~NkDG~IDlNEfLe 611 (631)
T KOG0377|consen 536 SSLVETLYRNKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGA----ISDDEILELARSMDLNKDGKIDLNEFLE 611 (631)
T ss_pred hHHHHHHHhchhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCC----cCHHHHHHHHHhhccCCCCcccHHHHHH
Confidence 1134689999999999999999999999998755433222 2245566677889999999999999999
Q ss_pred HHHcCC
Q 042007 243 LLRGMV 248 (844)
Q Consensus 243 ll~~~~ 248 (844)
.+.-.+
T Consensus 612 AFrlvd 617 (631)
T KOG0377|consen 612 AFRLVD 617 (631)
T ss_pred HHhhhc
Confidence 887554
No 128
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=98.35 E-value=2e-06 Score=94.07 Aligned_cols=141 Identities=19% Similarity=0.210 Sum_probs=109.2
Q ss_pred HHHHHHHHHccc--CCCCcCHHHHhhccCCCCCHHHHHHHHHHHhcccCCCCCCceeHHHHHHHHHHhccCChHHHHHHH
Q 042007 102 WRSIERRFQQFA--VSGRLPKDKFGICVGMGESTEFSVGVFEALARRRKVNTENGITKEEVRMFWEDMTKKDLDARLQIF 179 (844)
Q Consensus 102 ~~~l~~~F~~ld--~dG~is~~eF~~~lg~~~~~~~~~~lf~~l~~~~~~d~dG~I~f~EF~~~l~~~~~~~~~~~l~~~ 179 (844)
...++-.|-.+| .||.|+.+++...=.-....-++++||+..-+..-.-.+|++||++|+.++-...+.+...-|+-.
T Consensus 277 f~viy~kFweLD~Dhd~lidk~~L~ry~d~tlt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~k~t~~SleYw 356 (493)
T KOG2562|consen 277 FYVIYCKFWELDTDHDGLIDKEDLKRYGDHTLTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEEDKDTPASLEYW 356 (493)
T ss_pred HHHHHHHHhhhccccccccCHHHHHHHhccchhhHHHHHHHhhccccceeeecCcccHHHHHHHHHHhccCCCccchhhh
Confidence 344556688788 799999999987764444567899999966665545678999999999999888888888899999
Q ss_pred HHHhccCCCCcccHHHHHHHHHhhhc-cccccccccchHHHHHHHHHHhCCCCCCceeHHHHHH
Q 042007 180 FDMCDKNGDGILTEDEVREVIVLSAS-ENKLSNLKENSSTYAALIMEKLDPDCKGYIEMWQLEI 242 (844)
Q Consensus 180 F~~fD~d~dG~It~eEl~~il~~~~~-~~~l~~~~~~~~e~~~~if~~~D~d~dG~It~~EF~~ 242 (844)
|+..|.|+||.||.+|++-+...... ......-.-..++...+|++-+-+.+.++||++||+.
T Consensus 357 FrclDld~~G~Lt~~el~~fyeeq~~rm~~~~~e~l~fed~l~qi~DMvkP~~~~kItLqDlk~ 420 (493)
T KOG2562|consen 357 FRCLDLDGDGILTLNELRYFYEEQLQRMECMGQEALPFEDALCQIRDMVKPEDENKITLQDLKG 420 (493)
T ss_pred eeeeeccCCCcccHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhCccCCCceeHHHHhh
Confidence 99999999999999999887743211 0001100112466788899999999999999999987
No 129
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=98.25 E-value=4.8e-06 Score=83.35 Aligned_cols=99 Identities=21% Similarity=0.271 Sum_probs=73.5
Q ss_pred hHHHHHHHHHHHcccCCCC-cCHHHHhhccCC---CCCH-HHHHHHHHHHhcccCCCCCCceeHHHHHHHHHHhccC-Ch
Q 042007 99 NDAWRSIERRFQQFAVSGR-LPKDKFGICVGM---GEST-EFSVGVFEALARRRKVNTENGITKEEVRMFWEDMTKK-DL 172 (844)
Q Consensus 99 ~~~~~~l~~~F~~ld~dG~-is~~eF~~~lg~---~~~~-~~~~~lf~~l~~~~~~d~dG~I~f~EF~~~l~~~~~~-~~ 172 (844)
++...++.++|+. +++|. |+.++|...+.. .... .-.+-.|++++ .|++|.|+.+|+..++..+... ..
T Consensus 65 Np~~~rI~~~f~~-~~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD----~~~~G~I~reel~~iv~~~~~~~~~ 139 (187)
T KOG0034|consen 65 NPLADRIIDRFDT-DGNGDPVDFEEFVRLLSVFSPKASKREKLRFAFRVYD----LDGDGFISREELKQILRMMVGENDD 139 (187)
T ss_pred CcHHHHHHHHHhc-cCCCCccCHHHHHHHHhhhcCCccHHHHHHHHHHHhc----CCCCCcCcHHHHHHHHHHHHccCCc
Confidence 5677888999986 44555 999999998832 1111 13334455333 6779999999999999877542 22
Q ss_pred ------HHHHHHHHHHhccCCCCcccHHHHHHHHHh
Q 042007 173 ------DARLQIFFDMCDKNGDGILTEDEVREVIVL 202 (844)
Q Consensus 173 ------~~~l~~~F~~fD~d~dG~It~eEl~~il~~ 202 (844)
++.+...|..+|.|+||+|+.+|++.++..
T Consensus 140 ~~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~~ 175 (187)
T KOG0034|consen 140 MSDEQLEDIVDKTFEEADTDGDGKISFEEFCKVVEK 175 (187)
T ss_pred chHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHc
Confidence 345778899999999999999999999953
No 130
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=98.24 E-value=3e-06 Score=68.14 Aligned_cols=61 Identities=25% Similarity=0.403 Sum_probs=52.0
Q ss_pred HHHHHHHhccCCCCcccHHHHHHHHHhhhccccccccccchHHHHHHHHHHhCCCCCCceeHHHHHHHH
Q 042007 176 LQIFFDMCDKNGDGILTEDEVREVIVLSASENKLSNLKENSSTYAALIMEKLDPDCKGYIEMWQLEILL 244 (844)
Q Consensus 176 l~~~F~~fD~d~dG~It~eEl~~il~~~~~~~~l~~~~~~~~e~~~~if~~~D~d~dG~It~~EF~~ll 244 (844)
++.+|+.+|.|++|.|+.+|+..++.... .....+.+..+|+.+|.+++|.|+++||..++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~--------~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLG--------EGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhC--------CCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 57789999999999999999999996532 12246678889999999999999999998876
No 131
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.18 E-value=4.4e-06 Score=66.32 Aligned_cols=52 Identities=23% Similarity=0.396 Sum_probs=42.3
Q ss_pred CCCcccHHHHHHHHHhhhccccccccccchHHHHHHHHHHhCCCCCCceeHHHHHHHHH
Q 042007 187 GDGILTEDEVREVIVLSASENKLSNLKENSSTYAALIMEKLDPDCKGYIEMWQLEILLR 245 (844)
Q Consensus 187 ~dG~It~eEl~~il~~~~~~~~l~~~~~~~~e~~~~if~~~D~d~dG~It~~EF~~ll~ 245 (844)
.+|+||.+||+.++..... +.+ .++.++.+|..+|.|++|+|+|+||..+|.
T Consensus 1 ~~G~i~~~~~~~~l~~~g~-~~~------s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~ 52 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGI-KDL------SEEEVDRLFREFDTDGDGYISFDEFISMMQ 52 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTS-SSS------CHHHHHHHHHHHTTSSSSSEEHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCC-CCC------CHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Confidence 3799999999999943221 112 356699999999999999999999999986
No 132
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.03 E-value=1.4e-05 Score=63.41 Aligned_cols=50 Identities=26% Similarity=0.392 Sum_probs=45.2
Q ss_pred CCceeHHHHHHHHHHhccC-ChHHHHHHHHHHhccCCCCcccHHHHHHHHH
Q 042007 152 ENGITKEEVRMFWEDMTKK-DLDARLQIFFDMCDKNGDGILTEDEVREVIV 201 (844)
Q Consensus 152 dG~I~f~EF~~~l~~~~~~-~~~~~l~~~F~~fD~d~dG~It~eEl~~il~ 201 (844)
+|.|+.+||..++..++.. ..+++++.+|..+|.|+||+|+.+||..++.
T Consensus 2 ~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~ 52 (54)
T PF13833_consen 2 DGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQ 52 (54)
T ss_dssp SSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHH
T ss_pred cCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Confidence 7899999999999777666 7788899999999999999999999998884
No 133
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.02 E-value=1.5e-05 Score=70.17 Aligned_cols=70 Identities=19% Similarity=0.252 Sum_probs=54.5
Q ss_pred HHHHHHHHhccC--CCCcccHHHHHHHHHhhhccccccccccchHHHHHHHHHHhCCCCCCceeHHHHHHHHHcC
Q 042007 175 RLQIFFDMCDKN--GDGILTEDEVREVIVLSASENKLSNLKENSSTYAALIMEKLDPDCKGYIEMWQLEILLRGM 247 (844)
Q Consensus 175 ~l~~~F~~fD~d--~dG~It~eEl~~il~~~~~~~~l~~~~~~~~e~~~~if~~~D~d~dG~It~~EF~~ll~~~ 247 (844)
.+-..|..|+.. .+|+|+.+||+.++..... +.++ ....++.++.+|+++|.|++|.|+|+||..+|...
T Consensus 9 ~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g-~~~t--~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 9 TIINVFHQYSVRKGHPDTLYKKEFKQLVEKELP-NFLK--KEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHHHHHHHhccCCCcccCCHHHHHHHHHHHhh-Hhhc--cCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 566779999866 4799999999999964322 1111 12346789999999999999999999999998754
No 134
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=97.99 E-value=7.2e-06 Score=55.99 Aligned_cols=28 Identities=32% Similarity=0.508 Sum_probs=25.2
Q ss_pred HHHHHHHHhccCCCCcccHHHHHHHHHh
Q 042007 175 RLQIFFDMCDKNGDGILTEDEVREVIVL 202 (844)
Q Consensus 175 ~l~~~F~~fD~d~dG~It~eEl~~il~~ 202 (844)
+++.+|+.||+|+||+|+.+||+++++.
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 4788999999999999999999999853
No 135
>PF14658 EF-hand_9: EF-hand domain
Probab=97.93 E-value=2.6e-05 Score=63.61 Aligned_cols=62 Identities=15% Similarity=0.278 Sum_probs=53.0
Q ss_pred HHHHHhccCCCCcccHHHHHHHHHhhhccccccccccchHHHHHHHHHHhCCCCC-CceeHHHHHHHHHc
Q 042007 178 IFFDMCDKNGDGILTEDEVREVIVLSASENKLSNLKENSSTYAALIMEKLDPDCK-GYIEMWQLEILLRG 246 (844)
Q Consensus 178 ~~F~~fD~d~dG~It~eEl~~il~~~~~~~~l~~~~~~~~e~~~~if~~~D~d~d-G~It~~EF~~ll~~ 246 (844)
.+|++||.++.|.|...++..+|+..+.. ...++.++.+..++|+++. |.|++++|..+|++
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~-------~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGR-------SPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCC-------CCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 47999999999999999999999876641 1235578889999999988 99999999999974
No 136
>PRK05419 putative sulfite oxidase subunit YedZ; Reviewed
Probab=97.93 E-value=1.3e-05 Score=81.86 Aligned_cols=127 Identities=17% Similarity=0.135 Sum_probs=83.1
Q ss_pred ccCcchhhhHHHHHHHHHHHHHHHHHhhhhccccccccCCchhhhhhhhcccCCCCCceeeeccccchhHHHHHHHHHHH
Q 042007 365 IPFDDNLNFHKLIALGIAIGSIVHTLFHLLCNYPKLSSCRPEKFMYLLGPALNYHQPTYYDLMIHTVGYTGVLMLVIMAI 444 (844)
Q Consensus 365 v~~d~~~~fHr~ig~~~~~~~~vH~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~tG~~~~v~l~i 444 (844)
.+.|+.+.+||++|..+++.+++|...++..+.. .+-+. +.. +.......+.|.+++++++.
T Consensus 68 ~~~~~l~~~RR~LGl~af~~a~lH~~~y~~~~~~----~~~~~----~~~----------~i~~~~~i~~G~ia~~lLl~ 129 (205)
T PRK05419 68 TGQPLLIRTRRLLGLWAFFYATLHLLSYLLLDLG----LDWSL----LGK----------EIVKRPYITVGMAAFLILLP 129 (205)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----ccHHH----HHH----------HHHhchHHHHHHHHHHHHHH
Confidence 3456789999999999999999999987632210 00001 100 01112223568889988999
Q ss_pred HHHhhhhhhhhccccccccccccccchhhHHHHHHHHHHHHHHHHHhccccccCCcCCcceeEeeeecchhhehhhhhHh
Q 042007 445 SFTLATHSFRRNVIKLPWIFHRFAGFNSFWYAHHLLVLAYVLLFMHGFFLIFDKPWYDKTTWIYIFFPVLFYANERFLAK 524 (844)
Q Consensus 445 ~~~~s~~~~Rr~~~~~~~~~~~~~~ye~F~~~H~l~~~~~v~l~~H~~~~~~~~~~~~~~~w~~~~~~~~l~~~dr~~R~ 524 (844)
+.++|..+.||+. || .|..+|.+..+++++.++|..+.. .... .....|.++ ++++..-|+.+.
T Consensus 130 LaiTS~~~~~rrL-----------g~-~Wk~LH~l~Y~a~~L~~~H~~~~~-k~~~--~~~~~y~~~-~~~ll~~R~~~~ 193 (205)
T PRK05419 130 LALTSTRASQRRL-----------GK-RWQKLHRLVYLIAILAPLHYLWSV-KSDS--PEPLIYAAI-VAVLLALRLKKL 193 (205)
T ss_pred HHHHhhHHHHHHH-----------HH-HHHHHHHHHHHHHHHHHHHHHHHh-cccc--ccHHHHHHH-HHHHHHHHHHHH
Confidence 9999999988764 48 899999999888889999955321 1111 122334433 455556677776
Q ss_pred h
Q 042007 525 F 525 (844)
Q Consensus 525 ~ 525 (844)
.
T Consensus 194 ~ 194 (205)
T PRK05419 194 R 194 (205)
T ss_pred H
Confidence 5
No 137
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=97.91 E-value=1.3e-05 Score=54.74 Aligned_cols=27 Identities=15% Similarity=0.313 Sum_probs=25.0
Q ss_pred HHHHHHHhCCCCCCceeHHHHHHHHHc
Q 042007 220 AALIMEKLDPDCKGYIEMWQLEILLRG 246 (844)
Q Consensus 220 ~~~if~~~D~d~dG~It~~EF~~ll~~ 246 (844)
++.+|+.+|+|+||+|+++||..+|.+
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 568999999999999999999999975
No 138
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=97.89 E-value=8.7e-05 Score=80.87 Aligned_cols=125 Identities=20% Similarity=0.351 Sum_probs=87.3
Q ss_pred HHHccc--CCCCcCHHHHhhcc---------CC------CCCH----HHHHHHHHHHhcccCCCCCCceeHHHHHHHHHH
Q 042007 108 RFQQFA--VSGRLPKDKFGICV---------GM------GEST----EFSVGVFEALARRRKVNTENGITKEEVRMFWED 166 (844)
Q Consensus 108 ~F~~ld--~dG~is~~eF~~~l---------g~------~~~~----~~~~~lf~~l~~~~~~d~dG~I~f~EF~~~l~~ 166 (844)
.|+.+| +||.|+.+||.... |+ .... +....+..-++. .|+++.++++||++++..
T Consensus 238 AFKMFD~dgnG~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~s~~~~~nsaL~~yFFG---~rg~~kLs~deF~~F~e~ 314 (489)
T KOG2643|consen 238 AFKMFDLDGNGEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGNSFKVEVNSALLTYFFG---KRGNGKLSIDEFLKFQEN 314 (489)
T ss_pred eeeeeecCCCCcccHHHHHHHHHHHHhccccceecccCccccceehhhhhhhHHHHhhc---cCCCccccHHHHHHHHHH
Confidence 444444 99999999997665 22 0011 112223333444 566999999999999986
Q ss_pred hccCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhhccccccccccchHHHHHHHHHHhCCCCCCceeHHHHHHHHH
Q 042007 167 MTKKDLDARLQIFFDMCDKNGDGILTEDEVREVIVLSASENKLSNLKENSSTYAALIMEKLDPDCKGYIEMWQLEILLR 245 (844)
Q Consensus 167 ~~~~~~~~~l~~~F~~fD~d~dG~It~eEl~~il~~~~~~~~l~~~~~~~~e~~~~if~~~D~d~dG~It~~EF~~ll~ 245 (844)
+ .+|-++.-|.-||+..+|.|++++|.+++-.....+... -+.+....-++++.+ +-.||++||+.+..
T Consensus 315 L----q~Eil~lEF~~~~~~~~g~Ise~DFA~~lL~~a~~n~~~-----k~~~lkrvk~kf~~~-~~gISl~Ef~~Ff~ 383 (489)
T KOG2643|consen 315 L----QEEILELEFERFDKGDSGAISEVDFAELLLAYAGVNSKK-----KHKYLKRVKEKFKDD-GKGISLQEFKAFFR 383 (489)
T ss_pred H----HHHHHHHHHHHhCcccccccCHHHHHHHHHHHcccchHh-----HHHHHHHHHHhccCC-CCCcCHHHHHHHHH
Confidence 5 467788889999999999999999999995443333221 234566777788877 44599999998874
No 139
>KOG1159 consensus NADP-dependent flavoprotein reductase [Energy production and conversion]
Probab=97.80 E-value=0.00027 Score=78.30 Aligned_cols=115 Identities=21% Similarity=0.313 Sum_probs=72.2
Q ss_pred EEEEEcCCCCCCCccCcccccCCCCCceEEEEEec-----------CCchHHHHHHHHhhcCCCCCCCCCCCcchhhhhh
Q 042007 562 YLFVKCPDLSPFEWHPFSITSAPGDYYLSVHIRTL-----------GDWTTELKQRFEKVCEAPAPAKPNRGNLMRMETK 630 (844)
Q Consensus 562 yv~l~~p~~s~~e~HPFTI~s~p~~~~l~l~Ir~~-----------G~~T~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~ 630 (844)
|++=-+|.+ ..+.|||+|.|....+++.|..+ |-.++.|.++ .+|+
T Consensus 358 yl~d~~P~I---rPR~fSIas~~~~~~leL~VAiV~ykT~l~~pRrGlCS~wl~sL-----------~~g~--------- 414 (574)
T KOG1159|consen 358 YLLDLLPVI---RPRAFSIASSPGAHHLELLVAIVEYKTILKEPRRGLCSNWLASL-----------KPGD--------- 414 (574)
T ss_pred HHHHhcccc---ccceeeeccCCCCCceeEEEEEEEEeeeccccccchhHHHHhhc-----------CCCC---------
Confidence 333345555 66889999999987787666543 6667777665 3452
Q ss_pred hhhccccccccccCcCEEEEeCccCCCCCCCCCCCeEEEEEcccchhchHHHHHHHHHHhhhcCcchhhhcCCCCCCCcE
Q 042007 631 SAANNANFEQIQASFPKILIKGPYGAPAQDYKNYDILLLIGLGIGATPFISIIKDLLNHIKSHERDTEFLENGFKKGPER 710 (844)
Q Consensus 631 ~~~~~~~~~~~~~~~~~v~IdGPyG~~~~~~~~~~~vvlVagGiGITp~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~~ 710 (844)
..++.|. =|....+......++|||-|+||||+.|++++-+... ...
T Consensus 415 --------------~i~~~v~--~g~l~~p~~~~~PlImVGPGTGvAPfRa~i~er~~q~-----------------~~~ 461 (574)
T KOG1159|consen 415 --------------EIPIKVR--PGTLYFPSDLNKPLIMVGPGTGVAPFRALIQERIYQG-----------------DKE 461 (574)
T ss_pred --------------eEEEEEe--cCccccCCCCCCCeEEEcCCCCcccHHHHHHHHHhhc-----------------cCC
Confidence 1334443 2332222223458999999999999999998876532 223
Q ss_pred EEEEEEeCCCChhhhHHHHHHH
Q 042007 711 AYFYWVTREQGSFEWFKGVMDD 732 (844)
Q Consensus 711 v~l~W~~R~~~~~~wf~~~L~~ 732 (844)
.-|+++||+.+.=-.|.++-.+
T Consensus 462 ~~lFfGCR~K~~Df~y~~eW~~ 483 (574)
T KOG1159|consen 462 NVLFFGCRNKDKDFLYEDEWTE 483 (574)
T ss_pred ceEEEecccCCccccccchhhh
Confidence 3678899988642234433333
No 140
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=97.76 E-value=9.8e-05 Score=65.79 Aligned_cols=66 Identities=11% Similarity=0.190 Sum_probs=49.7
Q ss_pred HHHHHHHHhcccCCCCCC-ceeHHHHHHHHHHh-----ccCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhh
Q 042007 136 SVGVFEALARRRKVNTEN-GITKEEVRMFWEDM-----TKKDLDARLQIFFDMCDKNGDGILTEDEVREVIVLSA 204 (844)
Q Consensus 136 ~~~lf~~l~~~~~~d~dG-~I~f~EF~~~l~~~-----~~~~~~~~l~~~F~~fD~d~dG~It~eEl~~il~~~~ 204 (844)
+.++|+.++++ |+|| .|+.+||..++... .....++.+..+++.+|.|+||.|+.+||..++...+
T Consensus 12 ~~~~F~~~dd~---dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l~ 83 (93)
T cd05026 12 LIRIFHNYSGK---EGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAALT 83 (93)
T ss_pred HHHHHHHHHcc---CCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHH
Confidence 44557766653 4587 59999999988652 3334667899999999999999999999999886543
No 141
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=97.76 E-value=0.0001 Score=64.91 Aligned_cols=66 Identities=21% Similarity=0.180 Sum_probs=52.5
Q ss_pred HHHHHHHHhcccCCCCCCceeHHHHHHHHHH-hccCChH-HHHHHHHHHhccCCCCcccHHHHHHHHHhhh
Q 042007 136 SVGVFEALARRRKVNTENGITKEEVRMFWED-MTKKDLD-ARLQIFFDMCDKNGDGILTEDEVREVIVLSA 204 (844)
Q Consensus 136 ~~~lf~~l~~~~~~d~dG~I~f~EF~~~l~~-~~~~~~~-~~l~~~F~~fD~d~dG~It~eEl~~il~~~~ 204 (844)
..++|+.++.+ +++|.|+.+||..++.. +...-.+ +.++.+++..|.|+||.|+.+||..+|...+
T Consensus 10 l~~~F~~fd~~---~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l~ 77 (89)
T cd05022 10 LVSNFHKASVK---GGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGELA 77 (89)
T ss_pred HHHHHHHHhCC---CCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHH
Confidence 45677766532 56899999999999987 6654444 7899999999999999999999999885443
No 142
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=97.75 E-value=6.5e-05 Score=81.83 Aligned_cols=127 Identities=14% Similarity=0.267 Sum_probs=76.2
Q ss_pred HHHHHHccc-C-CCCcCHHHHhhcc----CCCCCH--HHHHHHHHHHhcccCCCCCCceeHHHHHHHHHHhccCChHHHH
Q 042007 105 IERRFQQFA-V-SGRLPKDKFGICV----GMGEST--EFSVGVFEALARRRKVNTENGITKEEVRMFWEDMTKKDLDARL 176 (844)
Q Consensus 105 l~~~F~~ld-~-dG~is~~eF~~~l----g~~~~~--~~~~~lf~~l~~~~~~d~dG~I~f~EF~~~l~~~~~~~~~~~l 176 (844)
++--|..+| + +|.|+..+|++.+ +....+ ....++-+.+. -++.| |+++||..+..-+.+-.. .
T Consensus 320 l~lEF~~~~~~~~g~Ise~DFA~~lL~~a~~n~~~k~~~lkrvk~kf~----~~~~g-ISl~Ef~~Ff~Fl~~l~d---f 391 (489)
T KOG2643|consen 320 LELEFERFDKGDSGAISEVDFAELLLAYAGVNSKKKHKYLKRVKEKFK----DDGKG-ISLQEFKAFFRFLNNLND---F 391 (489)
T ss_pred HHHHHHHhCcccccccCHHHHHHHHHHHcccchHhHHHHHHHHHHhcc----CCCCC-cCHHHHHHHHHHHhhhhH---H
Confidence 444566666 3 3788888887776 222111 12233333222 12344 888888877654433222 2
Q ss_pred HHHHHHhccCCCCcccHHHHHHHHHhhhccccccccccchHHHHHHHHHHhCCCCCCceeHHHHHHHHHcC
Q 042007 177 QIFFDMCDKNGDGILTEDEVREVIVLSASENKLSNLKENSSTYAALIMEKLDPDCKGYIEMWQLEILLRGM 247 (844)
Q Consensus 177 ~~~F~~fD~d~dG~It~eEl~~il~~~~~~~~l~~~~~~~~e~~~~if~~~D~d~dG~It~~EF~~ll~~~ 247 (844)
..|-.+|- ...+-|+..+|+++..... +..|+ +-.++.+|.-||.|+||.++.+||..+|++-
T Consensus 392 d~Al~fy~-~Ag~~i~~~~f~raa~~vt-GveLS------dhVvdvvF~IFD~N~Dg~LS~~EFl~Vmk~R 454 (489)
T KOG2643|consen 392 DIALRFYH-MAGASIDEKTFQRAAKVVT-GVELS------DHVVDVVFTIFDENNDGTLSHKEFLAVMKRR 454 (489)
T ss_pred HHHHHHHH-HcCCCCCHHHHHHHHHHhc-Ccccc------cceeeeEEEEEccCCCCcccHHHHHHHHHHH
Confidence 22222332 2457888888888875432 23333 2356779999999999999999999999754
No 143
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=97.75 E-value=9.9e-05 Score=64.96 Aligned_cols=66 Identities=15% Similarity=0.310 Sum_probs=50.7
Q ss_pred HHHHHHHHhcccCCCCCC-ceeHHHHHHHHHH-----hccCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhh
Q 042007 136 SVGVFEALARRRKVNTEN-GITKEEVRMFWED-----MTKKDLDARLQIFFDMCDKNGDGILTEDEVREVIVLSA 204 (844)
Q Consensus 136 ~~~lf~~l~~~~~~d~dG-~I~f~EF~~~l~~-----~~~~~~~~~l~~~F~~fD~d~dG~It~eEl~~il~~~~ 204 (844)
..++|+.++++ |+|| .|+.+|+..+|.. +.....++.+..+++..|+|+||+|+.+||..++...+
T Consensus 10 l~~aF~~fD~~---dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~~ 81 (88)
T cd05027 10 LIDVFHQYSGR---EGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMVT 81 (88)
T ss_pred HHHHHHHhccc---CCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 45667755533 5588 5999999998887 56666778899999999999999999999988885433
No 144
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=97.74 E-value=0.00018 Score=78.01 Aligned_cols=99 Identities=14% Similarity=0.169 Sum_probs=83.1
Q ss_pred HHHHHHHHHhcccCCCCCCceeHHHHHHHHHHhccC-ChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhhccccccccc
Q 042007 135 FSVGVFEALARRRKVNTENGITKEEVRMFWEDMTKK-DLDARLQIFFDMCDKNGDGILTEDEVREVIVLSASENKLSNLK 213 (844)
Q Consensus 135 ~~~~lf~~l~~~~~~d~dG~I~f~EF~~~l~~~~~~-~~~~~l~~~F~~fD~d~dG~It~eEl~~il~~~~~~~~l~~~~ 213 (844)
-...+|+.|| .+++|.+|.++..+++..+..+ ...+-.+.+|...|.|.||.++.+||++-+..
T Consensus 15 r~~~lf~~lD----~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~----------- 79 (463)
T KOG0036|consen 15 RIRCLFKELD----SKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDN----------- 79 (463)
T ss_pred HHHHHHHHhc----cCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHHH-----------
Confidence 4566777665 5789999999999999888755 66788999999999999999999999998842
Q ss_pred cchHHHHHHHHHHhCCCCCCceeHHHHHHHHHcCCCC
Q 042007 214 ENSSTYAALIMEKLDPDCKGYIEMWQLEILLRGMVNE 250 (844)
Q Consensus 214 ~~~~e~~~~if~~~D~d~dG~It~~EF~~ll~~~~~~ 250 (844)
.|.....+|+..|.|+||.|+.+|...-+......
T Consensus 80 --~E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~gi~ 114 (463)
T KOG0036|consen 80 --KELELYRIFQSIDLEHDGKIDPNEIWRYLKDLGIQ 114 (463)
T ss_pred --hHHHHHHHHhhhccccCCccCHHHHHHHHHHhCCc
Confidence 13346689999999999999999999999877644
No 145
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=97.73 E-value=0.00011 Score=58.82 Aligned_cols=60 Identities=17% Similarity=0.321 Sum_probs=51.6
Q ss_pred HHHHHHHhcccCCCCCCceeHHHHHHHHHHhccCChHHHHHHHHHHhccCCCCcccHHHHHHHH
Q 042007 137 VGVFEALARRRKVNTENGITKEEVRMFWEDMTKKDLDARLQIFFDMCDKNGDGILTEDEVREVI 200 (844)
Q Consensus 137 ~~lf~~l~~~~~~d~dG~I~f~EF~~~l~~~~~~~~~~~l~~~F~~fD~d~dG~It~eEl~~il 200 (844)
..+|+.++ .|++|.|+++||..++..+.....++.++.+|+.+|.+++|.|+.+||..++
T Consensus 3 ~~~f~~~d----~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 3 REAFRLFD----KDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHhC----CCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 45677544 5679999999999999988877888999999999999999999999998765
No 146
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=97.69 E-value=0.00047 Score=65.08 Aligned_cols=97 Identities=20% Similarity=0.218 Sum_probs=79.6
Q ss_pred HHHHHHhcccCCCCCCceeHHHHHHHHHHhccCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhhccccccccccchH
Q 042007 138 GVFEALARRRKVNTENGITKEEVRMFWEDMTKKDLDARLQIFFDMCDKNGDGILTEDEVREVIVLSASENKLSNLKENSS 217 (844)
Q Consensus 138 ~lf~~l~~~~~~d~dG~I~f~EF~~~l~~~~~~~~~~~l~~~F~~fD~d~dG~It~eEl~~il~~~~~~~~l~~~~~~~~ 217 (844)
+.|..++ .|.||.|+.+++...+..++....++.|..+++ ++.|-|+.--|..++.. +|. ....+
T Consensus 36 EAF~~mD----qnrDG~IdkeDL~d~~aSlGk~~~d~elDaM~~----Ea~gPINft~FLTmfGe-----kL~--gtdpe 100 (171)
T KOG0031|consen 36 EAFNLMD----QNRDGFIDKEDLRDMLASLGKIASDEELDAMMK----EAPGPINFTVFLTMFGE-----KLN--GTDPE 100 (171)
T ss_pred HHHHHHh----ccCCCcccHHHHHHHHHHcCCCCCHHHHHHHHH----hCCCCeeHHHHHHHHHH-----Hhc--CCCHH
Confidence 3566555 577999999999999999998889999999986 57899998877776643 232 23457
Q ss_pred HHHHHHHHHhCCCCCCceeHHHHHHHHHcCCC
Q 042007 218 TYAALIMEKLDPDCKGYIEMWQLEILLRGMVN 249 (844)
Q Consensus 218 e~~~~if~~~D~d~dG~It~~EF~~ll~~~~~ 249 (844)
+.+-.+|+.||.+++|.|.-+.++++|....+
T Consensus 101 ~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~gD 132 (171)
T KOG0031|consen 101 EVILNAFKTFDDEGSGKIDEDYLRELLTTMGD 132 (171)
T ss_pred HHHHHHHHhcCccCCCccCHHHHHHHHHHhcc
Confidence 88889999999999999999999999987743
No 147
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=97.68 E-value=0.00013 Score=81.53 Aligned_cols=56 Identities=23% Similarity=0.357 Sum_probs=49.2
Q ss_pred CChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhhccccccccccchHHHHHHHHHHhCCCCCCceeHHHHHHHHHc
Q 042007 170 KDLDARLQIFFDMCDKNGDGILTEDEVREVIVLSASENKLSNLKENSSTYAALIMEKLDPDCKGYIEMWQLEILLRG 246 (844)
Q Consensus 170 ~~~~~~l~~~F~~fD~d~dG~It~eEl~~il~~~~~~~~l~~~~~~~~e~~~~if~~~D~d~dG~It~~EF~~ll~~ 246 (844)
...++.++.+|++||.|+||+|+.+||.. ++.+|+.+|.|+||.|+++||...+..
T Consensus 330 ~~~~~~l~~aF~~~D~dgdG~Is~~E~~~---------------------~~~~F~~~D~d~DG~Is~eEf~~~~~~ 385 (391)
T PRK12309 330 EAFTHAAQEIFRLYDLDGDGFITREEWLG---------------------SDAVFDALDLNHDGKITPEEMRAGLGA 385 (391)
T ss_pred ChhhHHHHHHHHHhCCCCCCcCcHHHHHH---------------------HHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 45678999999999999999999999831 346899999999999999999998863
No 148
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=97.66 E-value=7.1e-05 Score=73.28 Aligned_cols=65 Identities=15% Similarity=0.335 Sum_probs=52.8
Q ss_pred HHHHHHHHHhccCCCCcccHHHHHHHHHhhhc-cccccccccchHHHHHHHHHHhCCCCCCceeHHHHHHHHHcC
Q 042007 174 ARLQIFFDMCDKNGDGILTEDEVREVIVLSAS-ENKLSNLKENSSTYAALIMEKLDPDCKGYIEMWQLEILLRGM 247 (844)
Q Consensus 174 ~~l~~~F~~fD~d~dG~It~eEl~~il~~~~~-~~~l~~~~~~~~e~~~~if~~~D~d~dG~It~~EF~~ll~~~ 247 (844)
+...-+|+.||.|.||+|+..||+.+|..++. ..++ -+..||++.|.|.||+|||-||.-+....
T Consensus 99 k~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL---------~lK~mikeVded~dgklSfreflLIfrka 164 (244)
T KOG0041|consen 99 KDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHL---------GLKNMIKEVDEDFDGKLSFREFLLIFRKA 164 (244)
T ss_pred HHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhH---------HHHHHHHHhhcccccchhHHHHHHHHHHH
Confidence 45677899999999999999999999964332 1222 25679999999999999999998888755
No 149
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=97.66 E-value=0.00017 Score=64.18 Aligned_cols=67 Identities=16% Similarity=0.295 Sum_probs=50.8
Q ss_pred HHHHHHHHHhcccCCCCCC-ceeHHHHHHHHHH-hc----cCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhh
Q 042007 135 FSVGVFEALARRRKVNTEN-GITKEEVRMFWED-MT----KKDLDARLQIFFDMCDKNGDGILTEDEVREVIVLSA 204 (844)
Q Consensus 135 ~~~~lf~~l~~~~~~d~dG-~I~f~EF~~~l~~-~~----~~~~~~~l~~~F~~fD~d~dG~It~eEl~~il~~~~ 204 (844)
...++|+.++++ |++| .|+.+|+..++.. +. ....++.++.+|+.+|.|++|.|+.+||..++...+
T Consensus 10 ~l~~~F~~fDd~---dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~~ 82 (92)
T cd05025 10 TLINVFHAHSGK---EGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAALT 82 (92)
T ss_pred HHHHHHHHHhcc---cCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHH
Confidence 356677766543 5588 4999999998864 32 234677899999999999999999999998886544
No 150
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=97.66 E-value=0.00016 Score=59.75 Aligned_cols=59 Identities=24% Similarity=0.362 Sum_probs=49.0
Q ss_pred HHHHHHhcccCCCCCCceeHHHHHHHHHHhccCChHHHHHHHHHHhccCCCCcccHHHHHHHHHh
Q 042007 138 GVFEALARRRKVNTENGITKEEVRMFWEDMTKKDLDARLQIFFDMCDKNGDGILTEDEVREVIVL 202 (844)
Q Consensus 138 ~lf~~l~~~~~~d~dG~I~f~EF~~~l~~~~~~~~~~~l~~~F~~fD~d~dG~It~eEl~~il~~ 202 (844)
++|+.++ .|++|.|+.+|+..++.... ..++.++.+|+.+|.|++|.|+.+||..++..
T Consensus 3 ~~F~~~D----~~~~G~i~~~el~~~l~~~g--~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~ 61 (67)
T cd00052 3 QIFRSLD----PDGDGLISGDEARPFLGKSG--LPRSVLAQIWDLADTDKDGKLDKEEFAIAMHL 61 (67)
T ss_pred HHHHHhC----CCCCCcCcHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHH
Confidence 4677655 57799999999999987764 36778999999999999999999999888854
No 151
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=97.58 E-value=0.00068 Score=63.02 Aligned_cols=108 Identities=14% Similarity=0.077 Sum_probs=86.8
Q ss_pred CHHHHHHHHHHHhcccCCCCCCceeHHHHHHHHHHhccCChHHHHHHHHHHhccC--CCCcccHHHHHHHHHhhhccccc
Q 042007 132 STEFSVGVFEALARRRKVNTENGITKEEVRMFWEDMTKKDLDARLQIFFDMCDKN--GDGILTEDEVREVIVLSASENKL 209 (844)
Q Consensus 132 ~~~~~~~lf~~l~~~~~~d~dG~I~f~EF~~~l~~~~~~~~~~~l~~~F~~fD~d--~dG~It~eEl~~il~~~~~~~~l 209 (844)
..+...++|..++ ..+||+|+..+.-+.+..++.++++..+...-..++.+ +--+|+.|+|--++..... ++.
T Consensus 9 ~~~e~ke~F~lfD----~~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vak-nk~ 83 (152)
T KOG0030|consen 9 QMEEFKEAFLLFD----RTGDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAK-NKD 83 (152)
T ss_pred hHHHHHHHHHHHh----ccCcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHh-ccc
Confidence 3456788899555 34699999999999999999999999999999999888 5679999999998876443 221
Q ss_pred cccccchHHHHHHHHHHhCCCCCCceeHHHHHHHHHcCC
Q 042007 210 SNLKENSSTYAALIMEKLDPDCKGYIEMWQLEILLRGMV 248 (844)
Q Consensus 210 ~~~~~~~~e~~~~if~~~D~d~dG~It~~EF~~ll~~~~ 248 (844)
+-..++.+ .-++.+|++++|.|...|++.+|....
T Consensus 84 ---q~t~edfv-egLrvFDkeg~G~i~~aeLRhvLttlG 118 (152)
T KOG0030|consen 84 ---QGTYEDFV-EGLRVFDKEGNGTIMGAELRHVLTTLG 118 (152)
T ss_pred ---cCcHHHHH-HHHHhhcccCCcceeHHHHHHHHHHHH
Confidence 22334444 458999999999999999999998775
No 152
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=97.57 E-value=8.4e-05 Score=51.69 Aligned_cols=27 Identities=41% Similarity=0.751 Sum_probs=24.4
Q ss_pred HHHHHHHHhccCCCCcccHHHHHHHHH
Q 042007 175 RLQIFFDMCDKNGDGILTEDEVREVIV 201 (844)
Q Consensus 175 ~l~~~F~~fD~d~dG~It~eEl~~il~ 201 (844)
+++.+|+.||+|+||+|+.+||+.+++
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 578999999999999999999999996
No 153
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=97.54 E-value=0.00034 Score=62.49 Aligned_cols=64 Identities=16% Similarity=0.256 Sum_probs=49.5
Q ss_pred HHHHHHHHhcccCCCC-CCceeHHHHHHHHHH-----hccCChHHHHHHHHHHhccCCCCcccHHHHHHHHHh
Q 042007 136 SVGVFEALARRRKVNT-ENGITKEEVRMFWED-----MTKKDLDARLQIFFDMCDKNGDGILTEDEVREVIVL 202 (844)
Q Consensus 136 ~~~lf~~l~~~~~~d~-dG~I~f~EF~~~l~~-----~~~~~~~~~l~~~F~~fD~d~dG~It~eEl~~il~~ 202 (844)
..++|+.+++ .|+ ||.|+.+|+..++.. +.....++.++.+|+.+|.|++|.|+.+||.+++..
T Consensus 10 l~~~F~~~D~---~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~ 79 (94)
T cd05031 10 LILTFHRYAG---KDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAG 79 (94)
T ss_pred HHHHHHHHhc---cCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 4556776663 254 699999999998875 233456788999999999999999999999888853
No 154
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=97.51 E-value=0.00043 Score=62.08 Aligned_cols=62 Identities=19% Similarity=0.253 Sum_probs=50.8
Q ss_pred HHHHHHHHHhcccCCCCCCceeHHHHHHHHHHhccCChHHHHHHHHHHhccCCCCcccHHHHHHHHHh
Q 042007 135 FSVGVFEALARRRKVNTENGITKEEVRMFWEDMTKKDLDARLQIFFDMCDKNGDGILTEDEVREVIVL 202 (844)
Q Consensus 135 ~~~~lf~~l~~~~~~d~dG~I~f~EF~~~l~~~~~~~~~~~l~~~F~~fD~d~dG~It~eEl~~il~~ 202 (844)
...++|+.++ .|++|.|+++|+..++... +..++.++.+|..+|.+++|+|+.+||..++..
T Consensus 11 ~l~~~F~~~D----~d~~G~Is~~el~~~l~~~--~~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~ 72 (96)
T smart00027 11 KYEQIFRSLD----KNQDGTVTGAQAKPILLKS--GLPQTLLAKIWNLADIDNDGELDKDEFALAMHL 72 (96)
T ss_pred HHHHHHHHhC----CCCCCeEeHHHHHHHHHHc--CCCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence 3556677555 5779999999999998774 356778999999999999999999999998854
No 155
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=97.51 E-value=0.00033 Score=61.36 Aligned_cols=69 Identities=19% Similarity=0.301 Sum_probs=50.9
Q ss_pred HHHHHHHHhccCCCCcccHHHHHHHHHhhhccccccccccchHHHHHHHHHHhCCCCCCceeHHHHHHHHHcC
Q 042007 175 RLQIFFDMCDKNGDGILTEDEVREVIVLSASENKLSNLKENSSTYAALIMEKLDPDCKGYIEMWQLEILLRGM 247 (844)
Q Consensus 175 ~l~~~F~~fD~d~dG~It~eEl~~il~~~~~~~~l~~~~~~~~e~~~~if~~~D~d~dG~It~~EF~~ll~~~ 247 (844)
.|-..|..|-.| +|.+++.||++++..... +-+. ...-.+.++.+|+.+|.|+||.|+|+||..++...
T Consensus 9 ~lI~~FhkYaG~-~~tLsk~Elk~Ll~~Elp-~~l~--~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l 77 (91)
T cd05024 9 KMMLTFHKFAGE-KNYLNRDDLQKLMEKEFS-EFLK--NQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGL 77 (91)
T ss_pred HHHHHHHHHcCC-CCcCCHHHHHHHHHHHhH-HHHc--CCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 345568888743 569999999999965332 1111 11235678999999999999999999999988643
No 156
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=97.50 E-value=0.00032 Score=64.91 Aligned_cols=59 Identities=20% Similarity=0.288 Sum_probs=47.7
Q ss_pred HHHHHHHHHHhcccCCCCCCceeHHHHHHHHHHhccCChHHHHHHHHHHhccCCCCcccHHHHHHHH
Q 042007 134 EFSVGVFEALARRRKVNTENGITKEEVRMFWEDMTKKDLDARLQIFFDMCDKNGDGILTEDEVREVI 200 (844)
Q Consensus 134 ~~~~~lf~~l~~~~~~d~dG~I~f~EF~~~l~~~~~~~~~~~l~~~F~~fD~d~dG~It~eEl~~il 200 (844)
..+.-.|..+| .|+||.|+.+|+..+. -...+..+..+|+.+|.|+||+||.+|+...+
T Consensus 48 ~~l~w~F~~lD----~d~DG~Ls~~EL~~~~----l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 48 DPVGWMFNQLD----GNYDGKLSHHELAPIR----LDPNEHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHHHHHC----CCCCCcCCHHHHHHHH----ccchHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 44666677665 5789999999998775 23456778899999999999999999999888
No 157
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=97.43 E-value=0.00059 Score=60.06 Aligned_cols=53 Identities=21% Similarity=0.250 Sum_probs=40.7
Q ss_pred CCceeHHHHHHHHHH---hccCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhh
Q 042007 152 ENGITKEEVRMFWED---MTKKDLDARLQIFFDMCDKNGDGILTEDEVREVIVLSA 204 (844)
Q Consensus 152 dG~I~f~EF~~~l~~---~~~~~~~~~l~~~F~~fD~d~dG~It~eEl~~il~~~~ 204 (844)
+|.|+.+||..++.. +.....++.+..+|+..|.|+||+|+.+||-.++...+
T Consensus 26 ~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l~ 81 (88)
T cd05029 26 KNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGALA 81 (88)
T ss_pred CCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHH
Confidence 778888888888853 45556777888888888888888888888877775443
No 158
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=97.39 E-value=0.00066 Score=59.88 Aligned_cols=64 Identities=22% Similarity=0.245 Sum_probs=43.3
Q ss_pred HHHHHHHhcccCCCCCC-ceeHHHHHHHHHHh-----ccCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhh
Q 042007 137 VGVFEALARRRKVNTEN-GITKEEVRMFWEDM-----TKKDLDARLQIFFDMCDKNGDGILTEDEVREVIVLS 203 (844)
Q Consensus 137 ~~lf~~l~~~~~~d~dG-~I~f~EF~~~l~~~-----~~~~~~~~l~~~F~~fD~d~dG~It~eEl~~il~~~ 203 (844)
..+|+..++ .|++| .|+.+||..++... .....++.+..+++.+|.|+||.|+.+||.+++...
T Consensus 12 ~~~F~~y~~---~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 12 IAVFQKYAG---KDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGL 81 (89)
T ss_pred HHHHHHHhc---cCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 344554333 34454 78888888887654 223445678888888888888888888888877543
No 159
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.39 E-value=0.00017 Score=47.45 Aligned_cols=25 Identities=28% Similarity=0.559 Sum_probs=22.1
Q ss_pred HHHHHHHhccCCCCcccHHHHHHHH
Q 042007 176 LQIFFDMCDKNGDGILTEDEVREVI 200 (844)
Q Consensus 176 l~~~F~~fD~d~dG~It~eEl~~il 200 (844)
|+.+|+.+|.|+||.||.+|+++++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHHC
Confidence 5678999999999999999998864
No 160
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=97.38 E-value=0.0005 Score=60.47 Aligned_cols=67 Identities=16% Similarity=0.233 Sum_probs=51.4
Q ss_pred HHHHHHHHHhcccCCCCCCceeHHHHHHHHHH-hcc----CChHHHHHHHHHHhccCCCCcccHHHHHHHHHhh
Q 042007 135 FSVGVFEALARRRKVNTENGITKEEVRMFWED-MTK----KDLDARLQIFFDMCDKNGDGILTEDEVREVIVLS 203 (844)
Q Consensus 135 ~~~~lf~~l~~~~~~d~dG~I~f~EF~~~l~~-~~~----~~~~~~l~~~F~~fD~d~dG~It~eEl~~il~~~ 203 (844)
...++|..++.++ |++|.|+.+||..++.. +.. ...++.+..++..+|.|++|.|+.+||..++...
T Consensus 9 ~l~~~F~~~D~~~--~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 9 TIIDVFHKYSGKE--GDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHHHhhcc--CCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHH
Confidence 3556688666321 46999999999999875 332 2247889999999999999999999999988643
No 161
>COG2717 Predicted membrane protein [Function unknown]
Probab=97.36 E-value=0.00041 Score=69.85 Aligned_cols=121 Identities=17% Similarity=0.172 Sum_probs=84.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhhccccccccCCchhhhhhhhcccCCCCCceeeeccccchhHHHHHHHHHHHHHHhhh
Q 042007 371 LNFHKLIALGIAIGSIVHTLFHLLCNYPKLSSCRPEKFMYLLGPALNYHQPTYYDLMIHTVGYTGVLMLVIMAISFTLAT 450 (844)
Q Consensus 371 ~~fHr~ig~~~~~~~~vH~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~tG~~~~v~l~i~~~~s~ 450 (844)
+.+-|.+|..+++.+++|...|+..+.. + . -+. +. . +.........|++++++|..+.++|.
T Consensus 74 ~~~Rr~LGl~af~~~~lH~~~Y~~~~l~-~--~-~~~----~~---~-------d~~~rpyitiG~iaflll~pLalTS~ 135 (209)
T COG2717 74 IRIRRALGLWAFFYALLHFTAYLVLDLG-L--D-LAL----LG---L-------DLLKRPYITIGMIAFLLLIPLALTSF 135 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-c--c-HHH----hh---H-------HHHHhHHHHHHHHHHHHHHHHHHHhh
Confidence 7899999999999999999999742211 0 0 000 11 0 11223345679999999999999999
Q ss_pred hhhhhccccccccccccccchhhHHHHHHHHHHHHHHHHHhccccccCCcCCcceeEeeeecchhhehhhhhHhh
Q 042007 451 HSFRRNVIKLPWIFHRFAGFNSFWYAHHLLVLAYVLLFMHGFFLIFDKPWYDKTTWIYIFFPVLFYANERFLAKF 525 (844)
Q Consensus 451 ~~~Rr~~~~~~~~~~~~~~ye~F~~~H~l~~~~~v~l~~H~~~~~~~~~~~~~~~w~~~~~~~~l~~~dr~~R~~ 525 (844)
.++||+- | ..|...|.+..+++++..+|..+.. +.. ....+.|.++ .+.|.+.|+.+..
T Consensus 136 k~~~rrl-----------G-~rW~~LHrLvYl~~~L~~lH~~~s~--K~~-~~~~vlY~ii-~~~lll~R~~k~~ 194 (209)
T COG2717 136 KWVRRRL-----------G-KRWKKLHRLVYLALILGALHYLWSV--KID-MPEPVLYAII-FAVLLLLRVTKTR 194 (209)
T ss_pred HHHHHHH-----------H-HHHHHHHHHHHHHHHHHHHHHHHhc--Ccc-chHHHHHHHH-HHHHHHHHHHHHH
Confidence 9999986 5 7889999999999999999987521 111 1123345433 5677778877665
No 162
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=97.22 E-value=0.00099 Score=58.38 Aligned_cols=63 Identities=10% Similarity=0.098 Sum_probs=44.9
Q ss_pred HHHHHHHHHHccc-CCCCcCHHHHhhcc--------CCCCCHHHHHHHHHHHhcccCCCCCCceeHHHHHHHHHHh
Q 042007 101 AWRSIERRFQQFA-VSGRLPKDKFGICV--------GMGESTEFSVGVFEALARRRKVNTENGITKEEVRMFWEDM 167 (844)
Q Consensus 101 ~~~~l~~~F~~ld-~dG~is~~eF~~~l--------g~~~~~~~~~~lf~~l~~~~~~d~dG~I~f~EF~~~l~~~ 167 (844)
.+..+-..|.+++ .++++++.||++.+ +...+...++++++.|| .|+||.|||+||+.++..+
T Consensus 6 ai~~lI~~FhkYaG~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD----~n~Dg~vdF~EF~~Lv~~l 77 (91)
T cd05024 6 SMEKMMLTFHKFAGEKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLD----DCRDGKVGFQSFFSLIAGL 77 (91)
T ss_pred HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhC----CCCCCcCcHHHHHHHHHHH
Confidence 4566677777777 56789999988877 22334566777777676 4778888888888777544
No 163
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.18 E-value=0.00049 Score=45.28 Aligned_cols=24 Identities=21% Similarity=0.340 Sum_probs=21.9
Q ss_pred HHHHHHhCCCCCCceeHHHHHHHH
Q 042007 221 ALIMEKLDPDCKGYIEMWQLEILL 244 (844)
Q Consensus 221 ~~if~~~D~d~dG~It~~EF~~ll 244 (844)
+.+|+.+|.|+||.|+++||.+++
T Consensus 2 ~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 2 KDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred HHHHHHHcCCCCCcCCHHHHHHHC
Confidence 468999999999999999999875
No 164
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=97.06 E-value=0.0014 Score=66.22 Aligned_cols=137 Identities=9% Similarity=0.007 Sum_probs=85.9
Q ss_pred HHHHHHHHHccc--CCCCcCHHHHhhccCCCCCHHH--HHHHHHHHhcccCCCCCCceeHHHHHHHHHHhccCChH----
Q 042007 102 WRSIERRFQQFA--VSGRLPKDKFGICVGMGESTEF--SVGVFEALARRRKVNTENGITKEEVRMFWEDMTKKDLD---- 173 (844)
Q Consensus 102 ~~~l~~~F~~ld--~dG~is~~eF~~~lg~~~~~~~--~~~lf~~l~~~~~~d~dG~I~f~EF~~~l~~~~~~~~~---- 173 (844)
-+.+...|.+.| .||+|+..|+++-+--+..+-| +.+--+..++-.+.|+||.|+.+||.--+......+..
T Consensus 100 rrklmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykvkFlaskghsekevad 179 (362)
T KOG4251|consen 100 RRKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVKFLASKGHSEKEVAD 179 (362)
T ss_pred HHHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhhHHHhhcCcchHHHHH
Confidence 345777888888 7999999999877611110011 11111222233337999999999998655443221111
Q ss_pred ----------HHHHHHHHHhccCCCCcccH---------HHHHHHHHhhhccccccccccchHHHHHHHHHHhCCCCCCc
Q 042007 174 ----------ARLQIFFDMCDKNGDGILTE---------DEVREVIVLSASENKLSNLKENSSTYAALIMEKLDPDCKGY 234 (844)
Q Consensus 174 ----------~~l~~~F~~fD~d~dG~It~---------eEl~~il~~~~~~~~l~~~~~~~~e~~~~if~~~D~d~dG~ 234 (844)
++-...|..-|+|.+|..+. +|+-.++--..+ .....+.+..|+..+|+|+|..
T Consensus 180 airlneelkVDeEtqevlenlkdRwyqaDsppadlllteeEflsFLHPEhS-------rgmLrfmVkeivrdlDqdgDkq 252 (362)
T KOG4251|consen 180 AIRLNEELKVDEETQEVLENLKDRWYQADSPPADLLLTEEEFLSFLHPEHS-------RGMLRFMVKEIVRDLDQDGDKQ 252 (362)
T ss_pred HhhccCcccccHHHHHHHHhhhhhhccccCchhhhhhhHHHHHHHcChHhh-------hhhHHHHHHHHHHHhccCCCee
Confidence 12234455667777776554 887766632111 2234677889999999999999
Q ss_pred eeHHHHHHHHH
Q 042007 235 IEMWQLEILLR 245 (844)
Q Consensus 235 It~~EF~~ll~ 245 (844)
++..||..+..
T Consensus 253 lSvpeFislpv 263 (362)
T KOG4251|consen 253 LSVPEFISLPV 263 (362)
T ss_pred ecchhhhcCCC
Confidence 99999987654
No 165
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=96.94 E-value=0.0029 Score=55.76 Aligned_cols=53 Identities=19% Similarity=0.281 Sum_probs=39.4
Q ss_pred CCCceeHHHHHHHHH-HhccCCh----HHHHHHHHHHhccCCCCcccHHHHHHHHHhh
Q 042007 151 TENGITKEEVRMFWE-DMTKKDL----DARLQIFFDMCDKNGDGILTEDEVREVIVLS 203 (844)
Q Consensus 151 ~dG~I~f~EF~~~l~-~~~~~~~----~~~l~~~F~~fD~d~dG~It~eEl~~il~~~ 203 (844)
++|.|+.+||..++. .+..... ++.+..+|+.+|.|+||.|+.+||..++...
T Consensus 23 ~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 23 HPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred CcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 367788888877775 3332222 7788889999999999999999998888543
No 166
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=96.92 E-value=0.0056 Score=75.22 Aligned_cols=131 Identities=15% Similarity=0.226 Sum_probs=93.6
Q ss_pred chHHHHHHHHHHHccc--CCCCcCHHHHhhcc---C----CC---CCHHHHHHHHHHHhcccCCCCCCceeHHHHHHHHH
Q 042007 98 ENDAWRSIERRFQQFA--VSGRLPKDKFGICV---G----MG---ESTEFSVGVFEALARRRKVNTENGITKEEVRMFWE 165 (844)
Q Consensus 98 ~~~~~~~l~~~F~~ld--~dG~is~~eF~~~l---g----~~---~~~~~~~~lf~~l~~~~~~d~dG~I~f~EF~~~l~ 165 (844)
+.+.+.+..-.|+.+| ++|+++.++|..|| | |. ...+..+++.++++ ++.+|.|+..||+.+|.
T Consensus 2248 tEe~L~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vD----P~r~G~Vsl~dY~afmi 2323 (2399)
T KOG0040|consen 2248 TEEQLKEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVD----PNRDGYVSLQDYMAFMI 2323 (2399)
T ss_pred CHHHHHHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcC----CCCcCcccHHHHHHHHH
Confidence 3566777777777777 89999999999999 1 11 12234566666555 67899999999999996
Q ss_pred Hhc--cCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhhccccccccccchHHHHHHHHHHhCCC----CCCceeHHH
Q 042007 166 DMT--KKDLDARLQIFFDMCDKNGDGILTEDEVREVIVLSASENKLSNLKENSSTYAALIMEKLDPD----CKGYIEMWQ 239 (844)
Q Consensus 166 ~~~--~~~~~~~l~~~F~~fD~d~dG~It~eEl~~il~~~~~~~~l~~~~~~~~e~~~~if~~~D~d----~dG~It~~E 239 (844)
.-. +-...+.+..+|+-.|. +.-|||++|+.+-|. .++++-.+..|=..+|+- ..++++|.+
T Consensus 2324 ~~ETeNI~s~~eIE~AfraL~a-~~~yvtke~~~~~lt-----------reqaefc~s~m~~~~e~~~~~s~q~~l~y~d 2391 (2399)
T KOG0040|consen 2324 SKETENILSSEEIEDAFRALDA-GKPYVTKEELYQNLT-----------REQAEFCMSKMKPYAETSSGRSDQVALDYKD 2391 (2399)
T ss_pred hcccccccchHHHHHHHHHhhc-CCccccHHHHHhcCC-----------HHHHHHHHHHhhhhcccccCCCccccccHHH
Confidence 432 22345599999999999 888999999866552 333444455555666663 346799999
Q ss_pred HHHHH
Q 042007 240 LEILL 244 (844)
Q Consensus 240 F~~ll 244 (844)
|..-+
T Consensus 2392 fv~sl 2396 (2399)
T KOG0040|consen 2392 FVNSL 2396 (2399)
T ss_pred HHHHH
Confidence 98755
No 167
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=96.81 E-value=0.0055 Score=55.59 Aligned_cols=90 Identities=23% Similarity=0.334 Sum_probs=60.8
Q ss_pred ChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhhccccccccccchHHHHHHHHHHhCCCCCCceeHHHHHHHHHcCCCC
Q 042007 171 DLDARLQIFFDMCDKNGDGILTEDEVREVIVLSASENKLSNLKENSSTYAALIMEKLDPDCKGYIEMWQLEILLRGMVNE 250 (844)
Q Consensus 171 ~~~~~l~~~F~~fD~d~dG~It~eEl~~il~~~~~~~~l~~~~~~~~e~~~~if~~~D~d~dG~It~~EF~~ll~~~~~~ 250 (844)
...++...+|+..|. ++|+|+-++.+.++..+ ++. .+.+.+|..-.|.|+||+++++||.-+|.-...-
T Consensus 7 ~e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S----~L~------~~~L~~IW~LaD~~~dG~L~~~EF~iAm~Li~~~ 75 (104)
T PF12763_consen 7 EEKQKYDQIFQSLDP-QDGKISGDQAREFFMKS----GLP------RDVLAQIWNLADIDNDGKLDFEEFAIAMHLINRK 75 (104)
T ss_dssp CHHHHHHHHHHCTSS-STTEEEHHHHHHHHHHT----TSS------HHHHHHHHHHH-SSSSSEEEHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCC-CCCeEeHHHHHHHHHHc----CCC------HHHHHHHHhhhcCCCCCcCCHHHHHHHHHHHHHH
Confidence 445678888998885 68999999999988542 232 4668889999999999999999999988643210
Q ss_pred -CCCCCCccccchhhcccCCCCC
Q 042007 251 -EGPKMNNRTSTLTKAMIPQNYR 272 (844)
Q Consensus 251 -~~~~~~l~~~~~~~~~~~~~~~ 272 (844)
.+....+ ...+...|.|...+
T Consensus 76 ~~~~~~~l-P~~LP~~L~p~s~~ 97 (104)
T PF12763_consen 76 LNGNGKPL-PSSLPPSLIPPSKR 97 (104)
T ss_dssp HHHTTS----SSSSGGGSSSCG-
T ss_pred hcCCCCCC-chhcCHHHCCCCcc
Confidence 1222345 44556666655433
No 168
>COG2375 ViuB Siderophore-interacting protein [Inorganic ion transport and metabolism]
Probab=96.75 E-value=0.31 Score=51.48 Aligned_cols=197 Identities=13% Similarity=0.133 Sum_probs=125.2
Q ss_pred ccccEEEEEEEEecCCEEEEEEeCCCCCc----cCCCcEEEEEcCCCCC-C-------------------CccCcccccC
Q 042007 528 LNHKVEVIKAVIYTGNVLALYMTKPPGFK----YQSGMYLFVKCPDLSP-F-------------------EWHPFSITSA 583 (844)
Q Consensus 528 ~~~~~~i~~v~~~~~~v~~l~i~~p~~~~----~~pGQyv~l~~p~~s~-~-------------------e~HPFTI~s~ 583 (844)
+.+.++|+.++.++.+.+++++..|.... ...+|||.|.+|..+. . -.++|||.+.
T Consensus 16 ~~~~~~V~~~~~lsP~m~Rv~~~g~~l~~f~~~~~~d~~ikL~fp~~~~~~~~~~~~~~~~~~~~~~~r~~~R~YTiR~~ 95 (265)
T COG2375 16 RLHEATVTRVTQLSPHMVRVVLGGEGLAGFASLGFGDQHIKLFFPPPDGDPPRLPVLEERGAVPPGAQRPPQRTYTIRAV 95 (265)
T ss_pred cceEEEEEEEEecCCCeEEEEEecccccccccccCCCceeEEEecCccCCCCCCcccccccccCccccCCCcccceeeee
Confidence 34678899999999999999999876433 3344599999986431 1 1577888654
Q ss_pred -CCCCce--EEEEE-ecCCchHHHHHHHHhhcCCCCCCCCCCCcchhhhhhhhhccccccccccCcCEEEEeCccCCCCC
Q 042007 584 -PGDYYL--SVHIR-TLGDWTTELKQRFEKVCEAPAPAKPNRGNLMRMETKSAANNANFEQIQASFPKILIKGPYGAPAQ 659 (844)
Q Consensus 584 -p~~~~l--~l~Ir-~~G~~T~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IdGPyG~~~~ 659 (844)
++...+ .|++- ..|--+..-.+. ++| .++.|-||=|....
T Consensus 96 d~~~~e~~vDfVlH~~~gpas~WA~~a-----------~~G-------------------------D~l~i~GP~g~~~p 139 (265)
T COG2375 96 DAAAGELDVDFVLHGEGGPASRWARTA-----------QPG-------------------------DTLTIMGPRGSLVP 139 (265)
T ss_pred cccccEEEEEEEEcCCCCcchhhHhhC-----------CCC-------------------------CEEEEeCCCCCCCC
Confidence 343444 33333 223222222211 456 78999999999654
Q ss_pred CCCCCCeEEEEEcccchhchHHHHHHHHHHhhhcCcchhhhcCCCCCCCcEEEEEEEeCCCChhhhHHHHHHHHhccCCC
Q 042007 660 DYKNYDILLLIGLGIGATPFISIIKDLLNHIKSHERDTEFLENGFKKGPERAYFYWVTREQGSFEWFKGVMDDIADHDDK 739 (844)
Q Consensus 660 ~~~~~~~vvlVagGiGITp~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~~v~l~W~~R~~~~~~wf~~~L~~l~~~~~~ 739 (844)
...++..+|||==+++..+..||..+- ...+++.+-.+++..+. ....+.
T Consensus 140 -~~~~~~~lLigDetAlPAIa~iLE~lp-------------------~~~~~~a~lev~d~ad~----------~~l~~~ 189 (265)
T COG2375 140 -PEAADWYLLIGDETALPAIARILETLP-------------------ADTPAEAFLEVDDAADR----------DELPSP 189 (265)
T ss_pred -CCCcceEEEeccccchHHHHHHHHhCC-------------------CCCceEEEEEeCChHHh----------hccCCC
Confidence 467899999999999999999988763 22344666677776553 112223
Q ss_pred CeEEEEEEEecccCCCChhHHHHHHHHHhhhhcCCccccccCcccccccCCChHHHHHHHHhhC--CCCcEEEEEeCChh
Q 042007 740 NVIEMHNYLTSVYEEGDARSALIAMVQKLQHAKNGVDIVSESRIKTHFARPNWRKVFGQLATDH--ESSRIGVFYCGSAT 817 (844)
Q Consensus 740 ~~l~i~~ylT~~~~~~d~~~~~~~~~~~~~~~~~~~d~~sg~~~~~~~gRPd~~~v~~~~~~~~--~~~~v~V~~CGP~~ 817 (844)
..++++-.... +.| -.+++.....+. +.+..-|++-|-.+
T Consensus 190 ~~l~~~Wl~r~-------------------------------------~~~-~~~ll~~a~~~~~~P~~~~~vwiagE~~ 231 (265)
T COG2375 190 DDLELEWLARD-------------------------------------DAP-TEQLLAAALAQAALPAGDYYVWIAGEAS 231 (265)
T ss_pred CceeEEEecCC-------------------------------------Ccc-chHHHHHHHhcccCCCCceEEEEeccHH
Confidence 45555433221 122 123333333322 33457899999999
Q ss_pred HHHHHHHHHHh
Q 042007 818 LTKTLKELCLE 828 (844)
Q Consensus 818 m~~~vr~~~~~ 828 (844)
+++.+|+..++
T Consensus 232 ~v~~~Rk~L~~ 242 (265)
T COG2375 232 AVKAIRKFLRN 242 (265)
T ss_pred HHHHHHHHHhh
Confidence 99999998876
No 169
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=96.75 E-value=0.0031 Score=58.86 Aligned_cols=98 Identities=21% Similarity=0.231 Sum_probs=71.1
Q ss_pred hHHHHHHHHHHHcccCCCCcCHHHHhhccC----CCCCHHHHHHHHHHHhcccCCCCCCceeHHHHHHHHHHhccC-ChH
Q 042007 99 NDAWRSIERRFQQFAVSGRLPKDKFGICVG----MGESTEFSVGVFEALARRRKVNTENGITKEEVRMFWEDMTKK-DLD 173 (844)
Q Consensus 99 ~~~~~~l~~~F~~ld~dG~is~~eF~~~lg----~~~~~~~~~~lf~~l~~~~~~d~dG~I~f~EF~~~l~~~~~~-~~~ 173 (844)
++--+++-+.|.. |++|.++.++|...+. +.+-..-+...|+ +.| -|+|+.|.-+++...+..+.+. ..+
T Consensus 70 npfk~ri~e~FSe-DG~GnlsfddFlDmfSV~sE~APrdlK~~YAFk-IYD---fd~D~~i~~~DL~~~l~~lTr~eLs~ 144 (189)
T KOG0038|consen 70 NPFKRRICEVFSE-DGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFK-IYD---FDGDEFIGHDDLEKTLTSLTRDELSD 144 (189)
T ss_pred ChHHHHHHHHhcc-CCCCcccHHHHHHHHHHHHhhChHHhhhhheeE-Eee---cCCCCcccHHHHHHHHHHHhhccCCH
Confidence 4556778889987 8999999999988773 2222222333444 222 5779999999999988877643 233
Q ss_pred H----HHHHHHHHhccCCCCcccHHHHHHHHH
Q 042007 174 A----RLQIFFDMCDKNGDGILTEDEVREVIV 201 (844)
Q Consensus 174 ~----~l~~~F~~fD~d~dG~It~eEl~~il~ 201 (844)
+ -+....+.-|.||||+|+..||..++.
T Consensus 145 eEv~~i~ekvieEAD~DgDgkl~~~eFe~~i~ 176 (189)
T KOG0038|consen 145 EEVELICEKVIEEADLDGDGKLSFAEFEHVIL 176 (189)
T ss_pred HHHHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Confidence 3 355667888999999999999999984
No 170
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=96.68 E-value=0.0036 Score=70.22 Aligned_cols=58 Identities=28% Similarity=0.295 Sum_probs=47.9
Q ss_pred CCCCCHHHHHHHHHHHhcccCCCCCCceeHHHHHHHHHHhccCChHHHHHHHHHHhccCCCCcccHHHHHHHHHh
Q 042007 128 GMGESTEFSVGVFEALARRRKVNTENGITKEEVRMFWEDMTKKDLDARLQIFFDMCDKNGDGILTEDEVREVIVL 202 (844)
Q Consensus 128 g~~~~~~~~~~lf~~l~~~~~~d~dG~I~f~EF~~~l~~~~~~~~~~~l~~~F~~fD~d~dG~It~eEl~~il~~ 202 (844)
|...-+..+..+|+.+| .|+||.|+.+||.. +..+|+.+|.|+||+|+.+||++.+..
T Consensus 328 ~~~~~~~~l~~aF~~~D----~dgdG~Is~~E~~~-------------~~~~F~~~D~d~DG~Is~eEf~~~~~~ 385 (391)
T PRK12309 328 GGEAFTHAAQEIFRLYD----LDGDGFITREEWLG-------------SDAVFDALDLNHDGKITPEEMRAGLGA 385 (391)
T ss_pred ccChhhHHHHHHHHHhC----CCCCCcCcHHHHHH-------------HHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 55555667888888655 57899999999952 467899999999999999999998854
No 171
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=96.68 E-value=0.0054 Score=47.32 Aligned_cols=49 Identities=24% Similarity=0.326 Sum_probs=40.1
Q ss_pred ceeHHHHHHHHHHhccCChHHHHHHHHHHhccCCCCcccHHHHHHHHHh
Q 042007 154 GITKEEVRMFWEDMTKKDLDARLQIFFDMCDKNGDGILTEDEVREVIVL 202 (844)
Q Consensus 154 ~I~f~EF~~~l~~~~~~~~~~~l~~~F~~fD~d~dG~It~eEl~~il~~ 202 (844)
+++|+|...++..+.-.-.++.+..+|+.+|++++|++..+|+.++.+.
T Consensus 1 kmsf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~ 49 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKR 49 (51)
T ss_dssp EBEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHH
Confidence 3789999999998877778889999999999999999999999998854
No 172
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=96.62 E-value=0.0027 Score=44.04 Aligned_cols=27 Identities=26% Similarity=0.454 Sum_probs=23.5
Q ss_pred HHHHHHHhCCCCCCceeHHHHHHHHHc
Q 042007 220 AALIMEKLDPDCKGYIEMWQLEILLRG 246 (844)
Q Consensus 220 ~~~if~~~D~d~dG~It~~EF~~ll~~ 246 (844)
...+|+.+|.|+||+|+.+||..+|.+
T Consensus 2 l~~~F~~~D~d~dG~I~~~el~~~l~~ 28 (31)
T PF13405_consen 2 LREAFKMFDKDGDGFIDFEELRAILRK 28 (31)
T ss_dssp HHHHHHHH-TTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCcHHHHHHHHHH
Confidence 457999999999999999999999973
No 173
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=96.61 E-value=0.002 Score=59.43 Aligned_cols=65 Identities=17% Similarity=0.156 Sum_probs=45.9
Q ss_pred ccCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhhccccccccccchHHHHHHHHHHhCCCCCCceeHHHHHH
Q 042007 168 TKKDLDARLQIFFDMCDKNGDGILTEDEVREVIVLSASENKLSNLKENSSTYAALIMEKLDPDCKGYIEMWQLEI 242 (844)
Q Consensus 168 ~~~~~~~~l~~~F~~fD~d~dG~It~eEl~~il~~~~~~~~l~~~~~~~~e~~~~if~~~D~d~dG~It~~EF~~ 242 (844)
....-...+.+.|...|.|+||.|+..|++.+.... ...+.-+...++..|.|+||.||++|+..
T Consensus 48 ~~~~~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l----------~~~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 48 SYSECKRVVHWKFCQLDRNKDGVLDRSELKPLRRPL----------MPPEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp TGGGGHHHHHHHHHHH--T-SSEE-TTTTGGGGSTT----------STTGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred chhhhhhhhhhhHhhhcCCCCCccCHHHHHHHHHHH----------hhhHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 344567789999999999999999999998776422 11233466799999999999999999864
No 174
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=96.51 E-value=0.0074 Score=65.93 Aligned_cols=63 Identities=21% Similarity=0.301 Sum_probs=52.5
Q ss_pred HHHHHHHHhcccCCCCCCceeHHHHHHHHHHhcc----CChHHHHHHHHHHhccCCCCcccHHHHHHHHHh
Q 042007 136 SVGVFEALARRRKVNTENGITKEEVRMFWEDMTK----KDLDARLQIFFDMCDKNGDGILTEDEVREVIVL 202 (844)
Q Consensus 136 ~~~lf~~l~~~~~~d~dG~I~f~EF~~~l~~~~~----~~~~~~l~~~F~~fD~d~dG~It~eEl~~il~~ 202 (844)
.+-+|+++| .|++|.|+.+||.++|..++. .-.++.+...=++.|.|+||.|+..||-+..+.
T Consensus 549 LetiF~~iD----~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrl 615 (631)
T KOG0377|consen 549 LETIFNIID----ADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFRL 615 (631)
T ss_pred HHHHHHHhc----cCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhh
Confidence 566788666 577999999999999987753 245677888889999999999999999988865
No 175
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.42 E-value=0.0076 Score=54.03 Aligned_cols=66 Identities=17% Similarity=0.195 Sum_probs=49.6
Q ss_pred HHHHHHhccCCCCcccHHHHHHHHHhhhc----cc---cccccccchHHHHHHHHHHhCCCCCCceeHHHHHHH
Q 042007 177 QIFFDMCDKNGDGILTEDEVREVIVLSAS----EN---KLSNLKENSSTYAALIMEKLDPDCKGYIEMWQLEIL 243 (844)
Q Consensus 177 ~~~F~~fD~d~dG~It~eEl~~il~~~~~----~~---~l~~~~~~~~e~~~~if~~~D~d~dG~It~~EF~~l 243 (844)
-.-|.|.|.|+||.|+--|+...+.-.-. +. .++ .+...+..++.+++.-|.|+||+|+|.||.+-
T Consensus 70 fHYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~-sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 70 FHYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLS-SEAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred hhhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCC-CHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 34699999999999999999888853211 11 111 24445677888999999999999999999753
No 176
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=96.39 E-value=0.0091 Score=46.11 Aligned_cols=48 Identities=19% Similarity=0.300 Sum_probs=37.7
Q ss_pred cccHHHHHHHHHhhhccccccccccchHHHHHHHHHHhCCCCCCceeHHHHHHHHH
Q 042007 190 ILTEDEVREVIVLSASENKLSNLKENSSTYAALIMEKLDPDCKGYIEMWQLEILLR 245 (844)
Q Consensus 190 ~It~eEl~~il~~~~~~~~l~~~~~~~~e~~~~if~~~D~d~dG~It~~EF~~ll~ 245 (844)
+++.+|++.+++.... +..+++|..+|++.|.+++|.++.+||+.+..
T Consensus 1 kmsf~Evk~lLk~~NI--------~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~ 48 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMNI--------EMDDEYARQLFQECDKSQSGRLEGEEFEEFYK 48 (51)
T ss_dssp EBEHHHHHHHHHHTT------------HHHHHHHHHHH-SSSSSEBEHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHcc--------CcCHHHHHHHHHHhcccCCCCccHHHHHHHHH
Confidence 4789999999976322 22478999999999999999999999998764
No 177
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=96.24 E-value=0.014 Score=59.22 Aligned_cols=126 Identities=17% Similarity=0.145 Sum_probs=82.9
Q ss_pred HHHHHHccc---CCCCcCHHHHhhccCCCCCH----HHHHHHHHHHhcccCCCCCCceeHHHHHHHHHHh---------c
Q 042007 105 IERRFQQFA---VSGRLPKDKFGICVGMGEST----EFSVGVFEALARRRKVNTENGITKEEVRMFWEDM---------T 168 (844)
Q Consensus 105 l~~~F~~ld---~dG~is~~eF~~~lg~~~~~----~~~~~lf~~l~~~~~~d~dG~I~f~EF~~~l~~~---------~ 168 (844)
+..+..+.| .|-.++.+||-..|--.-+. ..+.++...++ .|||..++-.||+...... .
T Consensus 200 lkdRwyqaDsppadlllteeEflsFLHPEhSrgmLrfmVkeivrdlD----qdgDkqlSvpeFislpvGTVenqqgqdid 275 (362)
T KOG4251|consen 200 LKDRWYQADSPPADLLLTEEEFLSFLHPEHSRGMLRFMVKEIVRDLD----QDGDKQLSVPEFISLPVGTVENQQGQDID 275 (362)
T ss_pred hhhhhccccCchhhhhhhHHHHHHHcChHhhhhhHHHHHHHHHHHhc----cCCCeeecchhhhcCCCcchhhhhccchH
Confidence 444444444 34456668888877322222 23344444333 5889999999998765211 1
Q ss_pred cCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhhccccccccccchHHHHHHHHHHhCCCCCCceeHHHHHH
Q 042007 169 KKDLDARLQIFFDMCDKNGDGILTEDEVREVIVLSASENKLSNLKENSSTYAALIMEKLDPDCKGYIEMWQLEI 242 (844)
Q Consensus 169 ~~~~~~~l~~~F~~fD~d~dG~It~eEl~~il~~~~~~~~l~~~~~~~~e~~~~if~~~D~d~dG~It~~EF~~ 242 (844)
+...+++.+.+=+..|.|.||..|.+|+...+-- .|.. .+-..+..||..-|.|+|.+++.+|+.+
T Consensus 276 dnwvkdRkkEFeElIDsNhDGivTaeELe~y~dP---~n~~-----~alne~~~~ma~~d~n~~~~Ls~eell~ 341 (362)
T KOG4251|consen 276 DNWVKDRKKEFEELIDSNHDGIVTAEELEDYVDP---QNFR-----LALNEVNDIMALTDANNDEKLSLEELLE 341 (362)
T ss_pred HHHHHHHHHHHHHHhhcCCccceeHHHHHhhcCc---hhhh-----hhHHHHHHHHhhhccCCCcccCHHHHHH
Confidence 1234568888889999999999999999887621 1111 1233466788888999999999998754
No 178
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=96.13 E-value=0.015 Score=52.79 Aligned_cols=48 Identities=19% Similarity=0.290 Sum_probs=23.7
Q ss_pred CCceeHHHHHHHHHHhccCChHHHHHHHHHHhccCCCCcccHHHHHHHHH
Q 042007 152 ENGITKEEVRMFWEDMTKKDLDARLQIFFDMCDKNGDGILTEDEVREVIV 201 (844)
Q Consensus 152 dG~I~f~EF~~~l~~~~~~~~~~~l~~~F~~fD~d~dG~It~eEl~~il~ 201 (844)
+|.|+-++-..++... +-..+.|..++++.|.|+||+++.+||.-+|.
T Consensus 23 ~g~isg~~a~~~f~~S--~L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~ 70 (104)
T PF12763_consen 23 DGKISGDQAREFFMKS--GLPRDVLAQIWNLADIDNDGKLDFEEFAIAMH 70 (104)
T ss_dssp TTEEEHHHHHHHHHHT--TSSHHHHHHHHHHH-SSSSSEEEHHHHHHHHH
T ss_pred CCeEeHHHHHHHHHHc--CCCHHHHHHHHhhhcCCCCCcCCHHHHHHHHH
Confidence 4555555555444332 33445555555555555555555555554443
No 179
>PF14658 EF-hand_9: EF-hand domain
Probab=96.13 E-value=0.018 Score=47.23 Aligned_cols=59 Identities=15% Similarity=0.288 Sum_probs=51.4
Q ss_pred HHHHHhcccCCCCCCceeHHHHHHHHHHhcc-CChHHHHHHHHHHhccCCC-CcccHHHHHHHHH
Q 042007 139 VFEALARRRKVNTENGITKEEVRMFWEDMTK-KDLDARLQIFFDMCDKNGD-GILTEDEVREVIV 201 (844)
Q Consensus 139 lf~~l~~~~~~d~dG~I~f~EF~~~l~~~~~-~~~~~~l~~~F~~fD~d~d-G~It~eEl~~il~ 201 (844)
.|++++ .++.|.|.-.++..+|..+.. ...|++|+.+-+++|.++. |.|+.++|..+|+
T Consensus 3 ~F~~fD----~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~ 63 (66)
T PF14658_consen 3 AFDAFD----TQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMR 63 (66)
T ss_pred chhhcC----CcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHH
Confidence 466444 466999999999999999887 7788999999999999987 9999999999885
No 180
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=95.64 E-value=0.072 Score=52.77 Aligned_cols=100 Identities=16% Similarity=0.155 Sum_probs=69.6
Q ss_pred HHHHHHHHhcccCCCCCCceeHHHHHHHHHHhccCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhhccccccccccc
Q 042007 136 SVGVFEALARRRKVNTENGITKEEVRMFWEDMTKKDLDARLQIFFDMCDKNGDGILTEDEVREVIVLSASENKLSNLKEN 215 (844)
Q Consensus 136 ~~~lf~~l~~~~~~d~dG~I~f~EF~~~l~~~~~~~~~~~l~~~F~~fD~d~dG~It~eEl~~il~~~~~~~~l~~~~~~ 215 (844)
...+|..+| .|.||.||+.|+..+|..++...+.--++.+....|.|.||+||..|+--+.+.... -.|. ++
T Consensus 101 ~~~~Fk~yD----e~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIfrkaaa-gEL~---~d 172 (244)
T KOG0041|consen 101 AESMFKQYD----EDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKAAA-GELQ---ED 172 (244)
T ss_pred HHHHHHHhc----ccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHHHHhc-cccc---cc
Confidence 455666444 467999999999999999887677778899999999999999999998877754332 1222 22
Q ss_pred hHHHHHHHHHHhCCCCCCceeHHHHHHH
Q 042007 216 SSTYAALIMEKLDPDCKGYIEMWQLEIL 243 (844)
Q Consensus 216 ~~e~~~~if~~~D~d~dG~It~~EF~~l 243 (844)
..-..-.=..+.|....|.---..|-+.
T Consensus 173 s~~~~LAr~~eVDVskeGV~GAknFFeA 200 (244)
T KOG0041|consen 173 SGLLRLARLSEVDVSKEGVSGAKNFFEA 200 (244)
T ss_pred hHHHHHHHhcccchhhhhhhhHHHHHHH
Confidence 2222222345688888887766666443
No 181
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=95.34 E-value=0.037 Score=62.12 Aligned_cols=67 Identities=15% Similarity=0.140 Sum_probs=55.4
Q ss_pred HHHHHHHHhccCCCCcccHHHHHHHHHhhhccccccccccchHHHHHHHHHHhCCCCCCceeHHHHHHHHHcC
Q 042007 175 RLQIFFDMCDKNGDGILTEDEVREVIVLSASENKLSNLKENSSTYAALIMEKLDPDCKGYIEMWQLEILLRGM 247 (844)
Q Consensus 175 ~l~~~F~~fD~d~dG~It~eEl~~il~~~~~~~~l~~~~~~~~e~~~~if~~~D~d~dG~It~~EF~~ll~~~ 247 (844)
.++..|...| |++|+||..|+..++....... .-..+|+++.++.+.+.|.+|.|+||||..++...
T Consensus 20 ~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~-----g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l 86 (627)
T KOG0046|consen 20 ELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPL-----GYFVREEIKEILGEVGVDADGRVEFEEFVGIFLNL 86 (627)
T ss_pred HHHHHHHhhc-CCCCeeehHHhHHHHHHhcccc-----cchhHHHHHHHHhccCCCcCCccCHHHHHHHHHhh
Confidence 5677799999 9999999999999996432211 33467889999999999999999999999987755
No 182
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=94.92 E-value=0.045 Score=67.79 Aligned_cols=73 Identities=14% Similarity=0.250 Sum_probs=57.9
Q ss_pred HHHHHHHHhccCCCCcccHHHHHHHHHhhhccccccccccchHHHHHHHHHHhCCCCCCceeHHHHHHHHHcCC
Q 042007 175 RLQIFFDMCDKNGDGILTEDEVREVIVLSASENKLSNLKENSSTYAALIMEKLDPDCKGYIEMWQLEILLRGMV 248 (844)
Q Consensus 175 ~l~~~F~~fD~d~dG~It~eEl~~il~~~~~~~~l~~~~~~~~e~~~~if~~~D~d~dG~It~~EF~~ll~~~~ 248 (844)
+...+|+.||++.+|+++.++|+..++..+-.-. ..-+.+.+...+.++..+|++.+|||+.+||...|....
T Consensus 2254 EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lp-mvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~E 2326 (2399)
T KOG0040|consen 2254 EFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLP-MVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMISKE 2326 (2399)
T ss_pred HHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCc-ccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHhcc
Confidence 4567899999999999999999999986543221 111334455788899999999999999999999998664
No 183
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=94.87 E-value=0.04 Score=36.04 Aligned_cols=27 Identities=22% Similarity=0.308 Sum_probs=24.0
Q ss_pred HHHHHHHhCCCCCCceeHHHHHHHHHc
Q 042007 220 AALIMEKLDPDCKGYIEMWQLEILLRG 246 (844)
Q Consensus 220 ~~~if~~~D~d~dG~It~~EF~~ll~~ 246 (844)
++.+|+.+|.|++|+|+++||..++..
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 456899999999999999999999864
No 184
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=94.77 E-value=0.099 Score=58.25 Aligned_cols=85 Identities=15% Similarity=0.240 Sum_probs=59.7
Q ss_pred HHHHHHcccCCCCcCHHHHhhccC---------CCCCHHHHHHHHHHHhcccCCCCCCceeHHHHHHHHHHhccCChHHH
Q 042007 105 IERRFQQFAVSGRLPKDKFGICVG---------MGESTEFSVGVFEALARRRKVNTENGITKEEVRMFWEDMTKKDLDAR 175 (844)
Q Consensus 105 l~~~F~~ld~dG~is~~eF~~~lg---------~~~~~~~~~~lf~~l~~~~~~d~dG~I~f~EF~~~l~~~~~~~~~~~ 175 (844)
.++.||+ .++|.++.++++.+++ .+-+.+++...|.... .-.++|.||.+++..+. +|.
T Consensus 113 aFqlFDr-~~~~~vs~~~~~~if~~t~l~~~~~f~~d~efI~~~Fg~~~-------~r~~ny~~f~Q~lh~~~----~E~ 180 (694)
T KOG0751|consen 113 AFQLFDR-LGNGEVSFEDVADIFGQTNLHHHIPFNWDSEFIKLHFGDIR-------KRHLNYAEFTQFLHEFQ----LEH 180 (694)
T ss_pred HHHHhcc-cCCCceehHHHHHHHhccccccCCCccCCcchHHHHhhhHH-------HHhccHHHHHHHHHHHH----HHH
Confidence 3344443 2677888888887773 2334456666665222 34578888888876553 456
Q ss_pred HHHHHHHhccCCCCcccHHHHHHHHH
Q 042007 176 LQIFFDMCDKNGDGILTEDEVREVIV 201 (844)
Q Consensus 176 l~~~F~~fD~d~dG~It~eEl~~il~ 201 (844)
.+++|...|+.++|.||.-+++.++.
T Consensus 181 ~~qafr~~d~~~ng~is~Ldfq~imv 206 (694)
T KOG0751|consen 181 AEQAFREKDKAKNGFISVLDFQDIMV 206 (694)
T ss_pred HHHHHHHhcccCCCeeeeechHhhhh
Confidence 88899999999999999999999984
No 185
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=94.53 E-value=0.039 Score=36.10 Aligned_cols=26 Identities=31% Similarity=0.625 Sum_probs=23.2
Q ss_pred HHHHHHHhccCCCCcccHHHHHHHHH
Q 042007 176 LQIFFDMCDKNGDGILTEDEVREVIV 201 (844)
Q Consensus 176 l~~~F~~fD~d~dG~It~eEl~~il~ 201 (844)
++.+|+.+|.|++|.|+.+||..+++
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~ 27 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLK 27 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHH
Confidence 57789999999999999999998875
No 186
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=93.74 E-value=0.51 Score=57.04 Aligned_cols=79 Identities=15% Similarity=0.278 Sum_probs=53.4
Q ss_pred CCCcCHHHHhhccCCCCCHHHHHHHHHHHhcccCCCCCCceeHHHHHHHHHHhc--------cCChHHHHHHHHHHhccC
Q 042007 115 SGRLPKDKFGICVGMGESTEFSVGVFEALARRRKVNTENGITKEEVRMFWEDMT--------KKDLDARLQIFFDMCDKN 186 (844)
Q Consensus 115 dG~is~~eF~~~lg~~~~~~~~~~lf~~l~~~~~~d~dG~I~f~EF~~~l~~~~--------~~~~~~~l~~~F~~fD~d 186 (844)
+| ++.+||. ... ..-++-.+-+|+..| ++||.++-+|+.+.+.... ....++....+++.-|.+
T Consensus 2 ~~-~~~~~~~-~~~-~~~d~~l~~~f~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (646)
T KOG0039|consen 2 EG-ISFQELK-ITD-CSYDDKLQTFFDMYD-----KGDGKLTEEEVRELIMSSISANWLSLIKKQTEEYAALIMEELDPD 73 (646)
T ss_pred CC-cchhhhc-ccC-CChhHHHHHHHHHHh-----hhcCCccHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhcccc
Confidence 56 8888888 222 222233445555433 2589999999888764321 123455677789999999
Q ss_pred CCCcccHHHHHHHHH
Q 042007 187 GDGILTEDEVREVIV 201 (844)
Q Consensus 187 ~dG~It~eEl~~il~ 201 (844)
+.|++..+++.-++.
T Consensus 74 ~~~y~~~~~~~~ll~ 88 (646)
T KOG0039|consen 74 HKGYITNEDLEILLL 88 (646)
T ss_pred ccceeeecchhHHHH
Confidence 999999999988884
No 187
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.84 E-value=0.22 Score=44.89 Aligned_cols=58 Identities=14% Similarity=-0.004 Sum_probs=42.9
Q ss_pred HHHHHccc--CCCCcCHHHHhhcc---------CC----CCCHHHHHHHHHHHhcccCCCCCCceeHHHHHHH
Q 042007 106 ERRFQQFA--VSGRLPKDKFGICV---------GM----GESTEFSVGVFEALARRRKVNTENGITKEEVRMF 163 (844)
Q Consensus 106 ~~~F~~ld--~dG~is~~eF~~~l---------g~----~~~~~~~~~lf~~l~~~~~~d~dG~I~f~EF~~~ 163 (844)
+..|+.-| +|+.|+--|+.+++ |. -.++...+++.+.+-+.++.|+||.|||.||++.
T Consensus 70 fHYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 70 FHYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred hhhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 44555544 89999999998887 22 1244567777777777777899999999999874
No 188
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=92.37 E-value=0.92 Score=53.90 Aligned_cols=129 Identities=17% Similarity=0.231 Sum_probs=93.0
Q ss_pred HHHHHHccc--CCCCcCHHHHhhcc---CCCCCHHHHHHHHHHHhcccCCCCCCceeHHHHHHHHHHhccCChHHHHHHH
Q 042007 105 IERRFQQFA--VSGRLPKDKFGICV---GMGESTEFSVGVFEALARRRKVNTENGITKEEVRMFWEDMTKKDLDARLQIF 179 (844)
Q Consensus 105 l~~~F~~ld--~dG~is~~eF~~~l---g~~~~~~~~~~lf~~l~~~~~~d~dG~I~f~EF~~~l~~~~~~~~~~~l~~~ 179 (844)
+...|++.| ++|.++..+...++ .+.-+...+..+|+..+ ..+++.+..++|..+-....... ++..+
T Consensus 138 i~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~----~~~~~k~~~~~~~~~~~~~~~rp---ev~~~ 210 (746)
T KOG0169|consen 138 IHSIFQEADKNKNGHMSFDEVLDLLKQLNVQLSESKARRLFKESD----NSQTGKLEEEEFVKFRKELTKRP---EVYFL 210 (746)
T ss_pred HHHHHHHHccccccccchhhHHHHHHHHHHhhhHHHHHHHHHHHH----hhccceehHHHHHHHHHhhccCc---hHHHH
Confidence 566777766 89999999887776 33334456777777664 25588999999999887665443 77888
Q ss_pred HHHhccCCCCcccHHHHHHHHHhhhccccccccccchHHHHHHHHHHhCCC----CCCceeHHHHHHHHHcC
Q 042007 180 FDMCDKNGDGILTEDEVREVIVLSASENKLSNLKENSSTYAALIMEKLDPD----CKGYIEMWQLEILLRGM 247 (844)
Q Consensus 180 F~~fD~d~dG~It~eEl~~il~~~~~~~~l~~~~~~~~e~~~~if~~~D~d----~dG~It~~EF~~ll~~~ 247 (844)
|..|-.+ .++++.++|.+++....... ....+.+.+|++++... ..+.+++|.|...|...
T Consensus 211 f~~~s~~-~~~ls~~~L~~Fl~~~q~e~------~~~~~~ae~ii~~~e~~k~~~~~~~l~ldgF~~yL~S~ 275 (746)
T KOG0169|consen 211 FVQYSHG-KEYLSTDDLLRFLEEEQGED------GATLDEAEEIIERYEPSKEFRRHGLLSLDGFTRYLFSP 275 (746)
T ss_pred HHHHhCC-CCccCHHHHHHHHHHhcccc------cccHHHHHHHHHHhhhhhhccccceecHHHHHHHhcCc
Confidence 8777555 89999999999997643222 22356677788777543 44669999999998654
No 189
>PF08021 FAD_binding_9: Siderophore-interacting FAD-binding domain; InterPro: IPR013113 Proteins in this entry are siderophore-interacting FAD-binding proteins. This entry includes the vibriobactin utilization protein ViuB, which is involved in the removal of iron from iron-vibriobactin complexes, as well as several hypothetical proteins.; PDB: 2GPJ_A.
Probab=92.15 E-value=0.68 Score=43.08 Aligned_cols=66 Identities=14% Similarity=0.177 Sum_probs=40.2
Q ss_pred EEEEEEEecCCEEEEEEeCCC--CCc-cCCCcEEEEEcCCCCCC---------------------CccCcccccC-CCCC
Q 042007 533 EVIKAVIYTGNVLALYMTKPP--GFK-YQSGMYLFVKCPDLSPF---------------------EWHPFSITSA-PGDY 587 (844)
Q Consensus 533 ~i~~v~~~~~~v~~l~i~~p~--~~~-~~pGQyv~l~~p~~s~~---------------------e~HPFTI~s~-p~~~ 587 (844)
+|+.++.++.+.++|++..+. .+. ..||||+.|.+|....- ..+.|||-+. |+.+
T Consensus 1 ~V~~~~~ltP~~~Rv~l~g~~l~~~~~~~~d~~ikL~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~R~YTvR~~d~~~~ 80 (117)
T PF08021_consen 1 TVVRVERLTPHMRRVTLGGEDLAGFPSWGPDQHIKLFFPPPGGDPPLPPPLDEGGYRWPPDEQRPVMRTYTVRRFDPETG 80 (117)
T ss_dssp EEEEEEEEETTEEEEEEESGGGTT--S--TT-EEEEEE--TTS----------------------EEEEEE--EEETT--
T ss_pred CEEEEEECCCCEEEEEEECCCcccCccCCCCcEEEEEeCCCCCCccccccccccccccccccCCCCCCCcCEeeEcCCCC
Confidence 467889999999999999865 332 57999999999875421 2456888775 5667
Q ss_pred ceEEEEEecCC
Q 042007 588 YLSVHIRTLGD 598 (844)
Q Consensus 588 ~l~l~Ir~~G~ 598 (844)
.+.|-+-..|+
T Consensus 81 ~l~iDfv~Hg~ 91 (117)
T PF08021_consen 81 ELDIDFVLHGD 91 (117)
T ss_dssp EEEEEEE--SS
T ss_pred EEEEEEEECCC
Confidence 78777766665
No 190
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=92.13 E-value=0.34 Score=41.92 Aligned_cols=67 Identities=21% Similarity=0.323 Sum_probs=48.0
Q ss_pred HHHHHHHHhccCCCCcccHHHHHHHHHhhhccccccccccchHHHHHHHHHHhCCC----CCCceeHHHHHHHHHcCC
Q 042007 175 RLQIFFDMCDKNGDGILTEDEVREVIVLSASENKLSNLKENSSTYAALIMEKLDPD----CKGYIEMWQLEILLRGMV 248 (844)
Q Consensus 175 ~l~~~F~~fD~d~dG~It~eEl~~il~~~~~~~~l~~~~~~~~e~~~~if~~~D~d----~dG~It~~EF~~ll~~~~ 248 (844)
+++.+|+.|-. +.+.||.++|.+.|+..-....+ ..+.+..+|+.+.++ ..+.+|+++|...|....
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~------~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S~~ 71 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRL------TDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFSDE 71 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTS------SHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHSTT
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccC------cHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCCCc
Confidence 36778888854 78899999999998643222222 356677777777654 479999999999997543
No 191
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=92.05 E-value=0.27 Score=51.77 Aligned_cols=95 Identities=21% Similarity=0.364 Sum_probs=63.1
Q ss_pred CCCCCceeHHHHHHHHHHhccCCh-HHHHHHHHHHhccCCCCcccHHHHHHHHHhhhc-----cccccccccchHH---H
Q 042007 149 VNTENGITKEEVRMFWEDMTKKDL-DARLQIFFDMCDKNGDGILTEDEVREVIVLSAS-----ENKLSNLKENSST---Y 219 (844)
Q Consensus 149 ~d~dG~I~f~EF~~~l~~~~~~~~-~~~l~~~F~~fD~d~dG~It~eEl~~il~~~~~-----~~~l~~~~~~~~e---~ 219 (844)
++.-| |.+++...|.....-++ +-.=+.+|.+.|.|+||.++..||..++..... .|.-....+..+| +
T Consensus 220 vnhPG--SkdQLkEVWEE~DgLdpn~fdPKTFF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRM 297 (442)
T KOG3866|consen 220 VNHPG--SKDQLKEVWEESDGLDPNQFDPKTFFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRM 297 (442)
T ss_pred CCCCC--cHHHHHHHHHHhcCCCcccCCcchheeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHH
Confidence 44455 67888888865432221 223567899999999999999999999864321 1111111111222 2
Q ss_pred HHHHHHHhCCCCCCceeHHHHHHHHH
Q 042007 220 AALIMEKLDPDCKGYIEMWQLEILLR 245 (844)
Q Consensus 220 ~~~if~~~D~d~dG~It~~EF~~ll~ 245 (844)
-...|++.|.|.|..||++||.+--.
T Consensus 298 REHVMk~vDtNqDRlvtleEFL~~t~ 323 (442)
T KOG3866|consen 298 REHVMKQVDTNQDRLVTLEEFLNDTD 323 (442)
T ss_pred HHHHHHhcccchhhhhhHHHHHhhhh
Confidence 35678999999999999999976553
No 192
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=91.97 E-value=0.39 Score=55.79 Aligned_cols=95 Identities=16% Similarity=0.135 Sum_probs=69.9
Q ss_pred CchHHHHHHHHHHHccc-------CCCCcCH---------HHHhhcc-CC---CCCHHHHHHHHHHHhcccCCCCCCcee
Q 042007 97 KENDAWRSIERRFQQFA-------VSGRLPK---------DKFGICV-GM---GESTEFSVGVFEALARRRKVNTENGIT 156 (844)
Q Consensus 97 ~~~~~~~~l~~~F~~ld-------~dG~is~---------~eF~~~l-g~---~~~~~~~~~lf~~l~~~~~~d~dG~I~ 156 (844)
..++++++++..|..-- +....+. +.|...+ ++ .-+..+++++|+.++ .+++|.++
T Consensus 498 lt~~dL~~lYd~f~~e~~~~~~~~~~~~p~~~~~eqyi~~~~f~~~f~~l~pw~~s~~~~~rlF~l~D----~s~~g~Lt 573 (671)
T KOG4347|consen 498 LTNTDLENLYDLFKEEHLTNSIGLGRSDPDFEAFEQYIDYAQFLEVFRELLPWAVSLIFLERLFRLLD----DSMTGLLT 573 (671)
T ss_pred cCHHHHHHHHHHHHHHHhccCcccCCCCCCchHHHHHHHHhhHHHHhhccCchhHHHHHHHHHHHhcc----cCCcceeE
Confidence 45678888898887621 1112222 2232222 11 123457888888655 46799999
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHhccCCCCcccHHHH
Q 042007 157 KEEVRMFWEDMTKKDLDARLQIFFDMCDKNGDGILTEDEV 196 (844)
Q Consensus 157 f~EF~~~l~~~~~~~~~~~l~~~F~~fD~d~dG~It~eEl 196 (844)
|++++..+..+..++.-+++..+|++||.++| ..+.||+
T Consensus 574 f~~lv~gL~~l~~~~~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 574 FKDLVSGLSILKAGDALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhhccCCcc-ccccccc
Confidence 99999999999989999999999999999999 9999987
No 193
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=91.87 E-value=0.084 Score=48.75 Aligned_cols=58 Identities=22% Similarity=0.300 Sum_probs=33.3
Q ss_pred HHHHHHHHHHhcccCCCCCCceeHHHHHHHHHHhccCChHHHHHHHHHHhccCCCCcccHHHHH
Q 042007 134 EFSVGVFEALARRRKVNTENGITKEEVRMFWEDMTKKDLDARLQIFFDMCDKNGDGILTEDEVR 197 (844)
Q Consensus 134 ~~~~~lf~~l~~~~~~d~dG~I~f~EF~~~l~~~~~~~~~~~l~~~F~~fD~d~dG~It~eEl~ 197 (844)
..+.=.|..|| .|+||.++..|+..+-..+ ...+.-++.+|+.+|.|+||.||..|..
T Consensus 54 ~~~~W~F~~LD----~n~d~~L~~~El~~l~~~l--~~~e~C~~~F~~~CD~n~d~~Is~~EW~ 111 (113)
T PF10591_consen 54 RVVHWKFCQLD----RNKDGVLDRSELKPLRRPL--MPPEHCARPFFRSCDVNKDGKISLDEWC 111 (113)
T ss_dssp HHHHHHHHHH------T-SSEE-TTTTGGGGSTT--STTGGGHHHHHHHH-TT-SSSEEHHHHH
T ss_pred hhhhhhHhhhc----CCCCCccCHHHHHHHHHHH--hhhHHHHHHHHHHcCCCCCCCCCHHHHc
Confidence 34555566566 4667777777776654433 2334456777888888888888877754
No 194
>PLN02952 phosphoinositide phospholipase C
Probab=90.62 E-value=1.4 Score=52.05 Aligned_cols=89 Identities=13% Similarity=0.131 Sum_probs=60.6
Q ss_pred CCCceeHHHHHHHHHHhcc--CChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhhccccccccccchHHHHHHHHHHh-
Q 042007 151 TENGITKEEVRMFWEDMTK--KDLDARLQIFFDMCDKNGDGILTEDEVREVIVLSASENKLSNLKENSSTYAALIMEKL- 227 (844)
Q Consensus 151 ~dG~I~f~EF~~~l~~~~~--~~~~~~l~~~F~~fD~d~dG~It~eEl~~il~~~~~~~~l~~~~~~~~e~~~~if~~~- 227 (844)
+.|.++|+||.++...+.. .....++..+|..|-.+ ++.+|.++|..+|...-..... ..+.+..+|+++
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~~-~~~mt~~~l~~FL~~~Q~e~~~------~~~~~~~i~~~~~ 85 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSVG-GGHMGADQLRRFLVLHQDELDC------TLAEAQRIVEEVI 85 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhCC-CCccCHHHHHHHHHHhCCCcCC------CHHHHHHHHHHHH
Confidence 3689999999998887753 23678899999999654 4689999999999653322111 233344454433
Q ss_pred ---C---CCCCCceeHHHHHHHHHc
Q 042007 228 ---D---PDCKGYIEMWQLEILLRG 246 (844)
Q Consensus 228 ---D---~d~dG~It~~EF~~ll~~ 246 (844)
. ..+.+.++++.|...|..
T Consensus 86 ~~~~~~~~~~~~~l~~~~F~~~l~s 110 (599)
T PLN02952 86 NRRHHVTRYTRHGLNLDDFFHFLLY 110 (599)
T ss_pred hhccccccccccCcCHHHHHHHHcC
Confidence 1 123356999999999974
No 195
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=90.50 E-value=0.6 Score=52.86 Aligned_cols=71 Identities=10% Similarity=0.163 Sum_probs=51.0
Q ss_pred CchHHHHHHHHHHHccc-CCCCcCHHHHhhcc---CCCCCHHHHHHHHHHHhcccCCCCCCceeHHHHHHHHHHhc
Q 042007 97 KENDAWRSIERRFQQFA-VSGRLPKDKFGICV---GMGESTEFSVGVFEALARRRKVNTENGITKEEVRMFWEDMT 168 (844)
Q Consensus 97 ~~~~~~~~l~~~F~~ld-~dG~is~~eF~~~l---g~~~~~~~~~~lf~~l~~~~~~d~dG~I~f~EF~~~l~~~~ 168 (844)
...+++.++...|.++| ++|+++..|+..++ +... ..+.++..+.+-+.-+.|.||.|+|+||+.++..+.
T Consensus 13 ~tq~El~~l~~kF~~~d~~~G~v~~~~l~~~f~k~~~~~-g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l~ 87 (627)
T KOG0046|consen 13 LTQEELRELKEKFNKLDDQKGYVTVYELPDAFKKAKLPL-GYFVREEIKEILGEVGVDADGRVEFEEFVGIFLNLK 87 (627)
T ss_pred ccHHHHHHHHHHHHhhcCCCCeeehHHhHHHHHHhcccc-cchhHHHHHHHHhccCCCcCCccCHHHHHHHHHhhh
Confidence 45688999999999998 89999999998887 2222 122333333333344478899999999999765443
No 196
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=89.97 E-value=1.8 Score=48.58 Aligned_cols=103 Identities=20% Similarity=0.278 Sum_probs=77.6
Q ss_pred HHHHHHHHHhcccCCCCCCceeHHHHHHHHHHhccCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhhcccccccccc
Q 042007 135 FSVGVFEALARRRKVNTENGITKEEVRMFWEDMTKKDLDARLQIFFDMCDKNGDGILTEDEVREVIVLSASENKLSNLKE 214 (844)
Q Consensus 135 ~~~~lf~~l~~~~~~d~dG~I~f~EF~~~l~~~~~~~~~~~l~~~F~~fD~d~dG~It~eEl~~il~~~~~~~~l~~~~~ 214 (844)
+...+|..+. .|..|.|+-..|.++|.... ....+.+..++..++..+.|+|..++++..+........+..++.
T Consensus 140 ~s~~~f~k~~----~d~~g~it~~~Fi~~~~~~~-~l~~t~~~~~v~~l~~~~~~yl~q~df~~~Lqeli~Thpl~~l~~ 214 (493)
T KOG2562|consen 140 FSASTFRKID----GDDTGHITRDKFINYWMRGL-MLTHTRLEQFVNLLIQAGCSYLRQDDFKPYLQELIATHPLEFLDE 214 (493)
T ss_pred cchhhhhhhc----cCcCCceeHHHHHHHHHhhh-hHHHHHHHHHHHHHhccCccceeccccHHHHHHHHhcCCchhhcc
Confidence 3455677666 46699999999999987543 355778899999999999999999999999976544344444433
Q ss_pred chH-------HHHHHHHHHhCCCCCCceeHHHHHH
Q 042007 215 NSS-------TYAALIMEKLDPDCKGYIEMWQLEI 242 (844)
Q Consensus 215 ~~~-------e~~~~if~~~D~d~dG~It~~EF~~ 242 (844)
..+ -.+..||=-+|+-+.|.|+..|..+
T Consensus 215 ~pEf~~~Y~~tvi~rIFy~~nrs~tG~iti~el~~ 249 (493)
T KOG2562|consen 215 EPEFQERYAETVIQRIFYYLNRSRTGRITIQELLR 249 (493)
T ss_pred ChhHHHHHHHHHhhhhheeeCCccCCceeHHHHHH
Confidence 322 2357788888999999999888754
No 197
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=89.68 E-value=0.2 Score=53.23 Aligned_cols=69 Identities=13% Similarity=0.098 Sum_probs=55.4
Q ss_pred HHHHHHHHhccCCCCcccHHHHHHHHHhhhccccccccccchHHHHHHHHHHhCCCCCCceeHHHHHHHHHcCCCC
Q 042007 175 RLQIFFDMCDKNGDGILTEDEVREVIVLSASENKLSNLKENSSTYAALIMEKLDPDCKGYIEMWQLEILLRGMVNE 250 (844)
Q Consensus 175 ~l~~~F~~fD~d~dG~It~eEl~~il~~~~~~~~l~~~~~~~~e~~~~if~~~D~d~dG~It~~EF~~ll~~~~~~ 250 (844)
-+++-|...|+|.++-|...|.+-+=.......+ ...-.+.+++-.|.|+|-.||++|+...+...++.
T Consensus 334 vv~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s~-------~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~~~~~ 402 (421)
T KOG4578|consen 334 VVHWYFNQLDKNSNNDIERREWKPFKRVLLKKSK-------PRKCSRKFFKYCDLNKDKKISLDEWRGCLGVEKER 402 (421)
T ss_pred eeeeeeeeecccccCccchhhcchHHHHHHhhcc-------HHHHhhhcchhcccCCCceecHHHHhhhhcccccc
Confidence 5788899999999999999997765544333322 34567789999999999999999999999766543
No 198
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=86.85 E-value=3.7 Score=50.16 Aligned_cols=95 Identities=15% Similarity=0.180 Sum_probs=69.0
Q ss_pred HHHHHHHHHHcccCCCCcCHHHHhhcc---CCCC--CHHHHHHHHHHHhcccCCCCCCceeHHHHHHHHHH-hccCChHH
Q 042007 101 AWRSIERRFQQFAVSGRLPKDKFGICV---GMGE--STEFSVGVFEALARRRKVNTENGITKEEVRMFWED-MTKKDLDA 174 (844)
Q Consensus 101 ~~~~l~~~F~~ld~dG~is~~eF~~~l---g~~~--~~~~~~~lf~~l~~~~~~d~dG~I~f~EF~~~l~~-~~~~~~~~ 174 (844)
++..++..|++. ..|.++.++|..|+ |... ......+.|.++..++ .+..|.++|.||.+.|.. ....+.++
T Consensus 748 ElrAle~~~~~~-d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n-~l~~~qv~~~e~~ddl~R~~e~l~~~~ 825 (890)
T KOG0035|consen 748 ELRALENEQDKI-DGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKN-PLIQGQVQLLEFEDDLEREYEDLDTEL 825 (890)
T ss_pred HHHHHHhHHHHh-hcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccC-cccccceeHHHHHhHhhhhhhhhcHHH
Confidence 344455555542 46779999999998 3322 2345677788666554 356789999999999964 44567788
Q ss_pred HHHHHHHHhccCCCCcccHHHHHH
Q 042007 175 RLQIFFDMCDKNGDGILTEDEVRE 198 (844)
Q Consensus 175 ~l~~~F~~fD~d~dG~It~eEl~~ 198 (844)
++..+|...-++.. +|..+||.+
T Consensus 826 r~i~s~~d~~ktk~-~lL~eEL~~ 848 (890)
T KOG0035|consen 826 RAILAFEDWAKTKA-YLLLEELVR 848 (890)
T ss_pred HHHHHHHHHHcchh-HHHHHHHHh
Confidence 99999999988876 899998876
No 199
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=86.20 E-value=0.84 Score=49.00 Aligned_cols=63 Identities=17% Similarity=0.212 Sum_probs=53.3
Q ss_pred HHHHHHHHHHhccCCCCcccHHHHHHHHHhhhccccccccccchHHHHHHHHHHhCCCCCCceeHHHHHHHHHcC
Q 042007 173 DARLQIFFDMCDKNGDGILTEDEVREVIVLSASENKLSNLKENSSTYAALIMEKLDPDCKGYIEMWQLEILLRGM 247 (844)
Q Consensus 173 ~~~l~~~F~~fD~d~dG~It~eEl~~il~~~~~~~~l~~~~~~~~e~~~~if~~~D~d~dG~It~~EF~~ll~~~ 247 (844)
.+.+-+||...|.|.||.++..||+.+-. ++-|.-++..|+..|...||.|+-.|+-..+...
T Consensus 249 Kds~gWMFnklD~N~Dl~Ld~sEl~~I~l------------dknE~CikpFfnsCD~~kDg~iS~~EWC~CF~k~ 311 (434)
T KOG3555|consen 249 KDSLGWMFNKLDTNYDLLLDQSELRAIEL------------DKNEACIKPFFNSCDTYKDGSISTNEWCYCFQKS 311 (434)
T ss_pred hhhhhhhhhccccccccccCHHHhhhhhc------------cCchhHHHHHHhhhcccccCccccchhhhhhccC
Confidence 56899999999999999999999987651 2235567789999999999999999999988654
No 200
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=85.85 E-value=3.4 Score=49.33 Aligned_cols=87 Identities=15% Similarity=0.181 Sum_probs=63.5
Q ss_pred CCCCCceeHHHHHHHHHHhccCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhhccccccccccchHHHHHHHHHHhC
Q 042007 149 VNTENGITKEEVRMFWEDMTKKDLDARLQIFFDMCDKNGDGILTEDEVREVIVLSASENKLSNLKENSSTYAALIMEKLD 228 (844)
Q Consensus 149 ~d~dG~I~f~EF~~~l~~~~~~~~~~~l~~~F~~fD~d~dG~It~eEl~~il~~~~~~~~l~~~~~~~~e~~~~if~~~D 228 (844)
.+++|.++|+|-..++..+.-+-.+.+++..|+..|..++|++..+++.+.-...... . .+..+|.++-
T Consensus 147 ~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~r----------p-ev~~~f~~~s 215 (746)
T KOG0169|consen 147 KNKNGHMSFDEVLDLLKQLNVQLSESKARRLFKESDNSQTGKLEEEEFVKFRKELTKR----------P-EVYFLFVQYS 215 (746)
T ss_pred cccccccchhhHHHHHHHHHHhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhccC----------c-hHHHHHHHHh
Confidence 5789999999999999888877888899999999988899999999988877432211 1 2344555544
Q ss_pred CCCCCceeHHHHHHHHHcC
Q 042007 229 PDCKGYIEMWQLEILLRGM 247 (844)
Q Consensus 229 ~d~dG~It~~EF~~ll~~~ 247 (844)
.+ .++++.+++.+++...
T Consensus 216 ~~-~~~ls~~~L~~Fl~~~ 233 (746)
T KOG0169|consen 216 HG-KEYLSTDDLLRFLEEE 233 (746)
T ss_pred CC-CCccCHHHHHHHHHHh
Confidence 33 6666666666666544
No 201
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=85.54 E-value=0.47 Score=50.53 Aligned_cols=85 Identities=12% Similarity=0.083 Sum_probs=60.7
Q ss_pred CCceeHHHHHHHHHHhccCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhhccccccccccchHHHHHHHHHHhCCCC
Q 042007 152 ENGITKEEVRMFWEDMTKKDLDARLQIFFDMCDKNGDGILTEDEVREVIVLSASENKLSNLKENSSTYAALIMEKLDPDC 231 (844)
Q Consensus 152 dG~I~f~EF~~~l~~~~~~~~~~~l~~~F~~fD~d~dG~It~eEl~~il~~~~~~~~l~~~~~~~~e~~~~if~~~D~d~ 231 (844)
.+.|.-.||...+.. ..-++++..|.+||.+++|.++..|--.-+... .+ .....+.++..|+.+|.+.
T Consensus 241 g~~igi~efa~~l~v----pvsd~l~~~f~LFde~~tg~~D~re~v~~lavl---c~----p~~t~~iiq~afk~f~v~e 309 (412)
T KOG4666|consen 241 GPDIGIVEFAVNLRV----PVSDKLAPTFMLFDEGTTGNGDYRETVKTLAVL---CG----PPVTPVIIQYAFKRFSVAE 309 (412)
T ss_pred CCCcceeEeeeeeec----chhhhhhhhhheecCCCCCcccHHHHhhhheee---eC----CCCcHHHHHHHHHhccccc
Confidence 455666666554432 223789999999999999999877654333211 11 1224677889999999999
Q ss_pred CCceeHHHHHHHHHcC
Q 042007 232 KGYIEMWQLEILLRGM 247 (844)
Q Consensus 232 dG~It~~EF~~ll~~~ 247 (844)
||++.-++|-.+++..
T Consensus 310 Dg~~ge~~ls~ilq~~ 325 (412)
T KOG4666|consen 310 DGISGEHILSLILQVV 325 (412)
T ss_pred ccccchHHHHHHHHHh
Confidence 9999999998888644
No 202
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=85.06 E-value=4 Score=50.70 Aligned_cols=63 Identities=10% Similarity=0.218 Sum_probs=48.2
Q ss_pred HHHhccCCCCcccHHHHHHHHHhhhccccccccccchHHHHHHHHHHhCCCCCCceeHHHHHHHHHcCCCCC
Q 042007 180 FDMCDKNGDGILTEDEVREVIVLSASENKLSNLKENSSTYAALIMEKLDPDCKGYIEMWQLEILLRGMVNEE 251 (844)
Q Consensus 180 F~~fD~d~dG~It~eEl~~il~~~~~~~~l~~~~~~~~e~~~~if~~~D~d~dG~It~~EF~~ll~~~~~~~ 251 (844)
|+.||.||.|.|++.||...|.. .... ...+.+-++.-+..|.+...+|+||.+-+.+...+.
T Consensus 4063 fkeydpdgkgiiskkdf~kame~---~k~y------tqse~dfllscae~dend~~~y~dfv~rfhepakdi 4125 (5019)
T KOG2243|consen 4063 FKEYDPDGKGIISKKDFHKAMEG---HKHY------TQSEIDFLLSCAEADENDMFDYEDFVDRFHEPAKDI 4125 (5019)
T ss_pred chhcCCCCCccccHHHHHHHHhc---cccc------hhHHHHHHHHhhccCccccccHHHHHHHhcCchhhc
Confidence 88899999999999999998842 1112 234566777778888899999999998876654443
No 203
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=84.79 E-value=3.4 Score=47.97 Aligned_cols=146 Identities=12% Similarity=0.116 Sum_probs=85.1
Q ss_pred HHHHHHHHHccc--CCCCcCHHHH----hhccCCCCCHHHHHHHHHHHhccc--CCCCCCceeHHHHHHHHHHhccCChH
Q 042007 102 WRSIERRFQQFA--VSGRLPKDKF----GICVGMGESTEFSVGVFEALARRR--KVNTENGITKEEVRMFWEDMTKKDLD 173 (844)
Q Consensus 102 ~~~l~~~F~~ld--~dG~is~~eF----~~~lg~~~~~~~~~~lf~~l~~~~--~~d~dG~I~f~EF~~~l~~~~~~~~~ 173 (844)
...+.+.|+--| +||.++-.|+ ..|++..-...+.+.+-..+.+.- +...+| ++..-|+.+-..+.+....
T Consensus 194 v~al~RIFki~D~d~D~~Lsd~Eln~fQ~~CF~~pl~p~~l~~vk~vv~e~~p~gv~~~~-ltl~GFLfL~~lfiergr~ 272 (625)
T KOG1707|consen 194 VKALKRIFKISDSDNDGALSDAELNDFQKKCFNTPLDPQELEDVKNVVQEICPDGVYERG-LTLPGFLFLNTLFIERGRH 272 (625)
T ss_pred HHHHHHHHhhhccccccccchhhhhHHHHHhcCCCCCHHHHHHHHHHHHhhcCchhhhcc-ccccchHHHHHHHHHhccc
Confidence 455667776544 8999997765 467777766666766666555532 222233 6777777766555433222
Q ss_pred HHHHHHHHHhccCCCCcccHHHHHHHHHhhhccccccccccchHHHHHHHHHHhCCCCCCceeHHHHHHHHHcCCCC
Q 042007 174 ARLQIFFDMCDKNGDGILTEDEVREVIVLSASENKLSNLKENSSTYAALIMEKLDPDCKGYIEMWQLEILLRGMVNE 250 (844)
Q Consensus 174 ~~l~~~F~~fD~d~dG~It~eEl~~il~~~~~~~~l~~~~~~~~e~~~~if~~~D~d~dG~It~~EF~~ll~~~~~~ 250 (844)
+-.-.+-+.|-.+.+=.++.+=+..-++. ..-+.-++.....+.+..+|..+|.|+||-++=+|+..+....|..
T Consensus 273 EttW~iLR~fgY~DsleL~~~~l~p~~~~--~p~~s~ELs~~~~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P~~ 347 (625)
T KOG1707|consen 273 ETTWTILRKFGYTDSLELTDEYLPPRLKV--PPDQSVELSPKGYRFLVDVFEKFDRDNDGALSPEELKDLFSTAPGS 347 (625)
T ss_pred cchhhhhhhcCCcchhhhhhhhcCccccC--CCCcceeccHHHHHHHHHHHHhccCCCCCCcCHHHHHHHhhhCCCC
Confidence 22222223332333333333222211111 1111122334456778899999999999999999999999988853
No 204
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=82.36 E-value=9.2 Score=33.72 Aligned_cols=71 Identities=7% Similarity=0.029 Sum_probs=45.3
Q ss_pred HHHHHHHHHHhccCCCCcccHHHHHHHHHhhhc-----cccccccccchHHHHHHHHHHhCCCCCCceeHHHHHHHHHcC
Q 042007 173 DARLQIFFDMCDKNGDGILTEDEVREVIVLSAS-----ENKLSNLKENSSTYAALIMEKLDPDCKGYIEMWQLEILLRGM 247 (844)
Q Consensus 173 ~~~l~~~F~~fD~d~dG~It~eEl~~il~~~~~-----~~~l~~~~~~~~e~~~~if~~~D~d~dG~It~~EF~~ll~~~ 247 (844)
+||+|.+|+.+ .|.+|.++..-|..++..... ....+... ++..++..|+..- ++-.|+.++|.+.|...
T Consensus 2 ~dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~--~e~sv~sCF~~~~--~~~~I~~~~Fl~wl~~e 76 (90)
T PF09069_consen 2 EDKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGY--IEPSVRSCFQQVQ--LSPKITENQFLDWLMSE 76 (90)
T ss_dssp HHHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT----HHHHHHHHHHTT--T-S-B-HHHHHHHHHT-
T ss_pred hHHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccC--cHHHHHHHhcccC--CCCccCHHHHHHHHHhC
Confidence 58999999999 688999999999988854221 11111112 5677888999873 45569999999999877
Q ss_pred C
Q 042007 248 V 248 (844)
Q Consensus 248 ~ 248 (844)
|
T Consensus 77 P 77 (90)
T PF09069_consen 77 P 77 (90)
T ss_dssp -
T ss_pred C
Confidence 6
No 205
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=76.11 E-value=1.3 Score=36.88 Aligned_cols=59 Identities=20% Similarity=0.335 Sum_probs=38.2
Q ss_pred ChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhhccccccccccchHHHHHHHHHHhC-CC---CCCceeHHHHHH
Q 042007 171 DLDARLQIFFDMCDKNGDGILTEDEVREVIVLSASENKLSNLKENSSTYAALIMEKLD-PD---CKGYIEMWQLEI 242 (844)
Q Consensus 171 ~~~~~l~~~F~~fD~d~dG~It~eEl~~il~~~~~~~~l~~~~~~~~e~~~~if~~~D-~d---~dG~It~~EF~~ 242 (844)
.+.+.+..+|+.. .++.++||.+||++.+. .+++ +++..-|.... ++ ..|..+|..|.+
T Consensus 3 ~s~eqv~~aFr~l-A~~KpyVT~~dLr~~l~-----------pe~a-ey~~~~Mp~~~~~~~~~~~~~~DY~~f~~ 65 (69)
T PF08726_consen 3 DSAEQVEEAFRAL-AGGKPYVTEEDLRRSLT-----------PEQA-EYCISRMPPYEGPDGDAIPGAYDYESFTN 65 (69)
T ss_dssp STCHHHHHHHHHH-CTSSSCEEHHHHHHHS------------CCCH-HHHHCCSEC--SSS----TTEEECHHHHC
T ss_pred CCHHHHHHHHHHH-HcCCCcccHHHHHHHcC-----------cHHH-HHHHHHCcccCCCCcCCCCCCcCHHHHHH
Confidence 4567899999999 78889999999998762 3334 45444443333 22 225677777754
No 206
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=75.28 E-value=7.7 Score=33.33 Aligned_cols=62 Identities=16% Similarity=0.246 Sum_probs=47.2
Q ss_pred HHHHHHHHhcccCCCCCCceeHHHHHHHHHHhccC--ChHHHHHHHHHHhccC----CCCcccHHHHHHHHHh
Q 042007 136 SVGVFEALARRRKVNTENGITKEEVRMFWEDMTKK--DLDARLQIFFDMCDKN----GDGILTEDEVREVIVL 202 (844)
Q Consensus 136 ~~~lf~~l~~~~~~d~dG~I~f~EF~~~l~~~~~~--~~~~~l~~~F~~fD~d----~dG~It~eEl~~il~~ 202 (844)
+..+|..+. ++.+.|+.++|..++...... ..++.++.+++.|..+ ..+.+|.++|...|..
T Consensus 2 i~~if~~ys-----~~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S 69 (83)
T PF09279_consen 2 IEEIFRKYS-----SDKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFS 69 (83)
T ss_dssp HHHHHHHHC-----TTSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHS
T ss_pred HHHHHHHHh-----CCCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCC
Confidence 456677554 236779999999999765533 3688899999999766 4799999999999953
No 207
>PRK10639 formate dehydrogenase-O subunit gamma; Provisional
Probab=71.07 E-value=31 Score=35.57 Aligned_cols=114 Identities=6% Similarity=-0.016 Sum_probs=53.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhhccccccccCCchhhhhhhhcccCC-CCCceeeeccccchhHHHHHHHHHHHHHHhh
Q 042007 371 LNFHKLIALGIAIGSIVHTLFHLLCNYPKLSSCRPEKFMYLLGPALNY-HQPTYYDLMIHTVGYTGVLMLVIMAISFTLA 449 (844)
Q Consensus 371 ~~fHr~ig~~~~~~~~vH~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~-~~p~~~~~~~~~~~~tG~~~~v~l~i~~~~s 449 (844)
...|+++|.++++..+++...++..+.+ ...+-.+...+...+.. +.|.. +......-.+.+++.+++.++.++.
T Consensus 54 r~iH~~~g~i~~~~~~~~~~~~~~~~~~---~~~d~~w~~~~~~~~~~~~~p~~-~kyN~~qk~~y~~~~~~~~~~~iTG 129 (211)
T PRK10639 54 RILHPFVGVVMFASFIIMFFRYWHHNLI---NRDDIFWAKNIRKIVVNEEVGDT-GRYNFGQKCVFWAAIIFLVLLLVSG 129 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCC---ChhhHHHHHHhhhhcCCCCCCCC-CCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 3579999999999999997665532221 11222222233333322 12211 1111111222222333333334444
Q ss_pred hhhhhhcc-ccccccccccccchhhHHHHHHHHHHHH-HHHHHhcc
Q 042007 450 THSFRRNV-IKLPWIFHRFAGFNSFWYAHHLLVLAYV-LLFMHGFF 493 (844)
Q Consensus 450 ~~~~Rr~~-~~~~~~~~~~~~ye~F~~~H~l~~~~~v-~l~~H~~~ 493 (844)
+-...... ..+|.++ .+.....|.+.+.+++ ++++|...
T Consensus 130 l~l~~p~~~~~~~~~~-----~~~~~~~H~~~a~~~i~~iivHiy~ 170 (211)
T PRK10639 130 VIIWRPYFAPAFSIPV-----IRFALMLHSFAAVALIVVIMVHIYA 170 (211)
T ss_pred HHHHHHhhcccCChHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33221100 1112222 5678899999887554 56788753
No 208
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=69.33 E-value=5.4 Score=49.76 Aligned_cols=136 Identities=15% Similarity=0.228 Sum_probs=94.9
Q ss_pred HHHHHHHHHHccc-CCCCcCHHHHhhccCC-CCCHHHHHHHHHHHhcccCCCCCCceeHHHHHHHHHHhc---c------
Q 042007 101 AWRSIERRFQQFA-VSGRLPKDKFGICVGM-GESTEFSVGVFEALARRRKVNTENGITKEEVRMFWEDMT---K------ 169 (844)
Q Consensus 101 ~~~~l~~~F~~ld-~dG~is~~eF~~~lg~-~~~~~~~~~lf~~l~~~~~~d~dG~I~f~EF~~~l~~~~---~------ 169 (844)
+..+..+.|..++ ++|.++-+.-+.++.- .-......++.+ +.| .|.+|.+++.||..+|..+. .
T Consensus 127 e~aky~q~f~s~~p~~g~~sg~~~~pil~~s~Lp~~~l~~iw~-l~d---~d~~g~Ld~~ef~~am~l~~~~l~~~~~p~ 202 (847)
T KOG0998|consen 127 EQAKYDQIFRSLSPSNGLLSGDKAKPILLNSKLPSDVLGRIWE-LSD---IDKDGNLDRDEFAVAMHLINDLLNGNSEPV 202 (847)
T ss_pred HHHHHHHHHhccCCCCCccccchhhhhhhcCCCChhhhccccc-ccc---ccccCCCChhhhhhhhhHHHHHhhcccCCC
Confidence 4455667788888 7889988888777732 223344556566 555 45699999999998873221 1
Q ss_pred --------------------------------------------------------------------------CC--hH
Q 042007 170 --------------------------------------------------------------------------KD--LD 173 (844)
Q Consensus 170 --------------------------------------------------------------------------~~--~~ 173 (844)
.. ..
T Consensus 203 P~~~p~~lIpps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~~~~~~s~~~~~~~~~~q~~~s~~~~vsp~d~ 282 (847)
T KOG0998|consen 203 PSRLPPSLIPPSKSELSANSSSKAIPFSQPFLASMASPTTLSSLVDLSALNSNPSLSSLSLASSMQLIVSWSPKVSPSDK 282 (847)
T ss_pred CccCCcccCCcchhcccccCcccccccccccccccccccccccccchhcccCCccccccccccccccccccCcccChHHH
Confidence 00 12
Q ss_pred HHHHHHHHHhccCCCCcccHHHHHHHHHhhhccccccccccchHHHHHHHHHHhCCCCCCceeHHHHHHHHHcCCCC
Q 042007 174 ARLQIFFDMCDKNGDGILTEDEVREVIVLSASENKLSNLKENSSTYAALIMEKLDPDCKGYIEMWQLEILLRGMVNE 250 (844)
Q Consensus 174 ~~l~~~F~~fD~d~dG~It~eEl~~il~~~~~~~~l~~~~~~~~e~~~~if~~~D~d~dG~It~~EF~~ll~~~~~~ 250 (844)
.+...+|...|++.+|+|+-.+...++.. .++. .+.+..+....|.+++|.|+++||.-.|..+...
T Consensus 283 ~~~~~if~q~d~~~dG~I~s~~~~~~f~~----~gl~------~~~l~~~w~l~d~~n~~~ls~~ef~~~~~~~~~~ 349 (847)
T KOG0998|consen 283 QKYSKIFSQVDKDNDGSISSNEARNIFLP----FGLS------KPRLAHVWLLADTQNTGTLSKDEFALAMHLLEQK 349 (847)
T ss_pred HHHHHHHHhccccCCCccccccccccccc----CCCC------hhhhhhhhhhcchhccCcccccccchhhhhhhhh
Confidence 34556799999999999999998887743 3332 3445678888999999999999998888766543
No 209
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=68.45 E-value=4.8 Score=47.72 Aligned_cols=65 Identities=20% Similarity=0.258 Sum_probs=48.5
Q ss_pred ChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhhccccccccccchHHHHHHHHHHhCCCCCCceeHHHHHHHHH
Q 042007 171 DLDARLQIFFDMCDKNGDGILTEDEVREVIVLSASENKLSNLKENSSTYAALIMEKLDPDCKGYIEMWQLEILLR 245 (844)
Q Consensus 171 ~~~~~l~~~F~~fD~d~dG~It~eEl~~il~~~~~~~~l~~~~~~~~e~~~~if~~~D~d~dG~It~~EF~~ll~ 245 (844)
...-+.+..|+..|+...|++|-..-+.+|..+. |. .-.+..|..-.|.|+||.++-|||.-.|.
T Consensus 192 ~~klKY~QlFNa~DktrsG~Lsg~qaR~aL~qS~----Lp------q~~LA~IW~LsDvd~DGkL~~dEfilam~ 256 (1118)
T KOG1029|consen 192 HNKLKYRQLFNALDKTRSGYLSGQQARSALGQSG----LP------QNQLAHIWTLSDVDGDGKLSADEFILAMH 256 (1118)
T ss_pred hhhhHHHHHhhhcccccccccccHHHHHHHHhcC----Cc------hhhHhhheeeeccCCCCcccHHHHHHHHH
Confidence 3455788889999999999999888888775421 21 22345677778999999999999977664
No 210
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=68.41 E-value=53 Score=40.20 Aligned_cols=127 Identities=15% Similarity=0.253 Sum_probs=88.3
Q ss_pred CCCCcCHHHHhhccCCCCCHHHHHHHHHHHhcc-------cCCCCCCceeHHHHHHHHHHhccCChHHHHHHHHHHhccC
Q 042007 114 VSGRLPKDKFGICVGMGESTEFSVGVFEALARR-------RKVNTENGITKEEVRMFWEDMTKKDLDARLQIFFDMCDKN 186 (844)
Q Consensus 114 ~dG~is~~eF~~~lg~~~~~~~~~~lf~~l~~~-------~~~d~dG~I~f~EF~~~l~~~~~~~~~~~l~~~F~~fD~d 186 (844)
..|+|....+-+.+...-. + .++..+|... +.++-|. .+++.|..++..++.. .++..+|..+--+
T Consensus 161 ~~grip~knI~k~F~~~k~-~--KrVe~al~~~gLp~~k~dsI~~d~-f~~e~f~~~l~klcpR---~eie~iF~ki~~~ 233 (1189)
T KOG1265|consen 161 FEGRIPVKNIIKTFSADKK-E--KRVEKALEACGLPSGKNDSIEPDD-FTLEKFYRLLNKLCPR---PEIEEIFRKISGK 233 (1189)
T ss_pred ccccccHHHHHHHhhcCCc-h--hHHHHHHHhcCCCCCCcCccChhh-ccHHHHHHHHHhcCCc---hhHHHHHHHhccC
Confidence 6899999998888743311 1 4555555542 1122222 5677777777777643 4788899999888
Q ss_pred CCCcccHHHHHHHHHhhhcccccccc--ccchHHHHHHHHHHhCCCCC----CceeHHHHHHHHHcC
Q 042007 187 GDGILTEDEVREVIVLSASENKLSNL--KENSSTYAALIMEKLDPDCK----GYIEMWQLEILLRGM 247 (844)
Q Consensus 187 ~dG~It~eEl~~il~~~~~~~~l~~~--~~~~~e~~~~if~~~D~d~d----G~It~~EF~~ll~~~ 247 (844)
+.-|+|.++|-..+...-...+|+++ .....+.+..+++.+.+|++ |.++-|-|...+...
T Consensus 234 ~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~~~a~~gqms~dgf~ryl~gd 300 (1189)
T KOG1265|consen 234 KKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNSDNAEKGQMSTDGFVRYLMGD 300 (1189)
T ss_pred CCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCchhhhhccccchhhhHHHhhCC
Confidence 88899999999999765555555432 12235668889999988765 889999998887653
No 211
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=62.13 E-value=19 Score=43.09 Aligned_cols=60 Identities=13% Similarity=0.203 Sum_probs=44.0
Q ss_pred HHHHHHHHccc--CCCCcCHHHHhhccCCCC-CHHHHHHHHHHHhcccCCCCCCceeHHHHHHHHHH
Q 042007 103 RSIERRFQQFA--VSGRLPKDKFGICVGMGE-STEFSVGVFEALARRRKVNTENGITKEEVRMFWED 166 (844)
Q Consensus 103 ~~l~~~F~~ld--~dG~is~~eF~~~lg~~~-~~~~~~~lf~~l~~~~~~d~dG~I~f~EF~~~l~~ 166 (844)
....+.|+.+| ..|.|+-..=+.+|+... .......|.. |.| +|+||.++-+||+-+|..
T Consensus 195 lKY~QlFNa~DktrsG~Lsg~qaR~aL~qS~Lpq~~LA~IW~-LsD---vd~DGkL~~dEfilam~l 257 (1118)
T KOG1029|consen 195 LKYRQLFNALDKTRSGYLSGQQARSALGQSGLPQNQLAHIWT-LSD---VDGDGKLSADEFILAMHL 257 (1118)
T ss_pred hHHHHHhhhcccccccccccHHHHHHHHhcCCchhhHhhhee-eec---cCCCCcccHHHHHHHHHH
Confidence 45788999999 789999888888874432 2223445555 554 788999999999988853
No 212
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=61.53 E-value=8.3 Score=41.75 Aligned_cols=61 Identities=21% Similarity=0.285 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHhcccCCCCCCceeHHHHHHHHHHhccCChHHHHHHHHHHhccCCCCcccHHHHHHHHH
Q 042007 133 TEFSVGVFEALARRRKVNTENGITKEEVRMFWEDMTKKDLDARLQIFFDMCDKNGDGILTEDEVREVIV 201 (844)
Q Consensus 133 ~~~~~~lf~~l~~~~~~d~dG~I~f~EF~~~l~~~~~~~~~~~l~~~F~~fD~d~dG~It~eEl~~il~ 201 (844)
+..+.=||..|+ .|.|+.++..|+..+- ....|.-++-+|+++|...||.|+-.|--.-+.
T Consensus 249 Kds~gWMFnklD----~N~Dl~Ld~sEl~~I~----ldknE~CikpFfnsCD~~kDg~iS~~EWC~CF~ 309 (434)
T KOG3555|consen 249 KDSLGWMFNKLD----TNYDLLLDQSELRAIE----LDKNEACIKPFFNSCDTYKDGSISTNEWCYCFQ 309 (434)
T ss_pred hhhhhhhhhccc----cccccccCHHHhhhhh----ccCchhHHHHHHhhhcccccCccccchhhhhhc
Confidence 345677788777 6889999999986653 345577899999999999999999999877664
No 213
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=60.81 E-value=6 Score=42.45 Aligned_cols=59 Identities=29% Similarity=0.405 Sum_probs=45.7
Q ss_pred HHHHhcccCCCCCCceeHHHHHHHHHHhcc-CChHHHHHHHHHHhccCCCCcccHHHHHHHHHh
Q 042007 140 FEALARRRKVNTENGITKEEVRMFWEDMTK-KDLDARLQIFFDMCDKNGDGILTEDEVREVIVL 202 (844)
Q Consensus 140 f~~l~~~~~~d~dG~I~f~EF~~~l~~~~~-~~~~~~l~~~F~~fD~d~dG~It~eEl~~il~~ 202 (844)
|..|+ +|.++.|+..|+.-+=..+.. .....-.+.+|+.+|.|+|-+||.+|++.-|..
T Consensus 339 F~qLd----kN~nn~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~ 398 (421)
T KOG4578|consen 339 FNQLD----KNSNNDIERREWKPFKRVLLKKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLGV 398 (421)
T ss_pred eeeec----ccccCccchhhcchHHHHHHhhccHHHHhhhcchhcccCCCceecHHHHhhhhcc
Confidence 55455 677888999997766554432 345667889999999999999999999888853
No 214
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=60.48 E-value=23 Score=35.06 Aligned_cols=33 Identities=15% Similarity=0.107 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHhCCCCCCceeHHHHHHHHHcCC
Q 042007 216 SSTYAALIMEKLDPDCKGYIEMWQLEILLRGMV 248 (844)
Q Consensus 216 ~~e~~~~if~~~D~d~dG~It~~EF~~ll~~~~ 248 (844)
..+..++||.+++..+.+.+|+.|..+|+....
T Consensus 94 vp~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr 126 (174)
T PF05042_consen 94 VPQKFEEIFSKYAKTGPDALTLRELWRMLKGNR 126 (174)
T ss_pred CHHHHHHHHHHhCCCCCCCcCHHHHHHHHHhcc
Confidence 456678899999998889999999999998653
No 215
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=59.16 E-value=66 Score=36.07 Aligned_cols=51 Identities=24% Similarity=0.243 Sum_probs=35.2
Q ss_pred CCCCceeHHHHHHHHH-HhccCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhh
Q 042007 150 NTENGITKEEVRMFWE-DMTKKDLDARLQIFFDMCDKNGDGILTEDEVREVIVLSA 204 (844)
Q Consensus 150 d~dG~I~f~EF~~~l~-~~~~~~~~~~l~~~F~~fD~d~dG~It~eEl~~il~~~~ 204 (844)
|.+|.|+.+|=-.++. .+...+...+=+..|.- .|-.||.+||-+....+.
T Consensus 80 D~nG~Id~~ESdeFlrEdmky~~~~~kr~~~fH~----dD~~ItVedLWeaW~~Se 131 (575)
T KOG4403|consen 80 DHNGSIDVEESDEFLREDMKYRDSTRKRSEKFHG----DDKHITVEDLWEAWKESE 131 (575)
T ss_pred ccCCCcccccchHHHHHHhhcccchhhhhhhccC----CccceeHHHHHHHHHhhh
Confidence 6789999998777775 34444555555556643 367899999988886543
No 216
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=55.19 E-value=22 Score=43.86 Aligned_cols=72 Identities=17% Similarity=0.166 Sum_probs=57.8
Q ss_pred HHHHHHHHHHhccCCCCcccHHHHHHHHHhhhccccccccccchHHHHHHHHHHhCCCCCCceeHHHHHHHHHcC
Q 042007 173 DARLQIFFDMCDKNGDGILTEDEVREVIVLSASENKLSNLKENSSTYAALIMEKLDPDCKGYIEMWQLEILLRGM 247 (844)
Q Consensus 173 ~~~l~~~F~~fD~d~dG~It~eEl~~il~~~~~~~~l~~~~~~~~e~~~~if~~~D~d~dG~It~~EF~~ll~~~ 247 (844)
.++++..|.-+|+...|-++.+|+...+...+. + ... +++..+....++.+-|++..|.+++.+|...|.+-
T Consensus 746 ~~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~-~-~e~-ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~ 817 (890)
T KOG0035|consen 746 LDELRALENEQDKIDGGAASPEELLRCLMSLGY-N-TEE-EEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLERE 817 (890)
T ss_pred HHHHHHHHhHHHHhhcccCCHHHHHHHHHhcCc-c-cch-hHHHHHHHHHHHhccCcccccceeHHHHHhHhhhh
Confidence 468999999999999999999999998865443 1 111 45566677778888899999999999999988654
No 217
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=54.10 E-value=44 Score=32.62 Aligned_cols=66 Identities=15% Similarity=0.127 Sum_probs=43.5
Q ss_pred HHHHHHh---ccCCCCcccHHHHHHHHHhhhccccccccccchHHHHHHHHHHhCCCCCCceeHHHHHHHHHcC
Q 042007 177 QIFFDMC---DKNGDGILTEDEVREVIVLSASENKLSNLKENSSTYAALIMEKLDPDCKGYIEMWQLEILLRGM 247 (844)
Q Consensus 177 ~~~F~~f---D~d~dG~It~eEl~~il~~~~~~~~l~~~~~~~~e~~~~if~~~D~d~dG~It~~EF~~ll~~~ 247 (844)
+.+|..| -..+...++-.-|..+++.+..-+ .......++.+|..+-..+...|+|++|+++|...
T Consensus 2 ~~~F~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d-----~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~l 70 (154)
T PF05517_consen 2 EAVFKAFASFGKKNGTEMDSKNFAKLCKDCGIID-----KKLTSTDVDIIFSKVKAKGARKITFEQFLEALAEL 70 (154)
T ss_dssp HHHHHHHHCSSTSTSSEEEHHHHHHHHHHTSS-------SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCccccccHHHHHHHHHHcCCCC-----CCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHH
Confidence 4445555 344556888888888887643211 11345678889999877777789999999999766
No 218
>PLN02631 ferric-chelate reductase
Probab=48.84 E-value=21 Score=43.54 Aligned_cols=55 Identities=24% Similarity=0.562 Sum_probs=45.6
Q ss_pred ccccc-CCChHHHHHHHHhhCCCCcEEEEEeCChhHHHHHHHHHHhhcCCCCceEEEEecCC
Q 042007 784 KTHFA-RPNWRKVFGQLATDHESSRIGVFYCGSATLTKTLKELCLEFSLESPTRFDFHKENF 844 (844)
Q Consensus 784 ~~~~g-RPd~~~v~~~~~~~~~~~~v~V~~CGP~~m~~~vr~~~~~~~~~~~~~~~~h~E~F 844 (844)
.+|+| |||+++++. +...+.+|||.+|||+.|..+|.+.|...+ ...++||.-+|
T Consensus 642 ~~~~g~rp~~~~i~~---~~~~~~~vgvlv~gp~~~~~~va~~c~s~~---~~~~~f~s~sf 697 (699)
T PLN02631 642 SVHFGSKPNLKKILL---EAEGSEDVGVMVCGPRKMRHEVAKICSSGL---AKNLHFEAISF 697 (699)
T ss_pred eeeecCCCCHHHHHH---hccCCCceeEEEECcHHHHHHHHHHHhcCC---CcceeEEeecc
Confidence 47887 999999998 333345899999999999999999998865 45788888776
No 219
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=48.50 E-value=25 Score=40.84 Aligned_cols=65 Identities=14% Similarity=0.217 Sum_probs=51.8
Q ss_pred HHHHHHHHhccCCCCcccHHHHHHHHHhhhccccccccccchHHHHHHHHHHhCCCCCCceeHHHHHHHHHcC
Q 042007 175 RLQIFFDMCDKNGDGILTEDEVREVIVLSASENKLSNLKENSSTYAALIMEKLDPDCKGYIEMWQLEILLRGM 247 (844)
Q Consensus 175 ~l~~~F~~fD~d~dG~It~eEl~~il~~~~~~~~l~~~~~~~~e~~~~if~~~D~d~dG~It~~EF~~ll~~~ 247 (844)
+.+.-|..+|.|..|+++.+++.++++... .+. .++.+.+..+++|.+.+|+++.+||.++|...
T Consensus 594 ~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~--~~~------d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~~ 658 (680)
T KOG0042|consen 594 RRKTRFAFLDADKKAYQAIADVLKVLKSEN--VGW------DEDRLHEELQEADENLNGFVELREFLQLMSAI 658 (680)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHHHHHhc--CCC------CHHHHHHHHHHHHHhhcceeeHHHHHHHHHHH
Confidence 455669999999999999999999996532 122 35567778888999999999999999988654
No 220
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=47.95 E-value=42 Score=30.43 Aligned_cols=66 Identities=11% Similarity=0.150 Sum_probs=45.2
Q ss_pred HHhccCCCCcccHHHHHHHHHhhh----ccccccccccchHHHHHHHHHHhCCCCCCceeHHHHHHHHHcCC
Q 042007 181 DMCDKNGDGILTEDEVREVIVLSA----SENKLSNLKENSSTYAALIMEKLDPDCKGYIEMWQLEILLRGMV 248 (844)
Q Consensus 181 ~~fD~d~dG~It~eEl~~il~~~~----~~~~l~~~~~~~~e~~~~if~~~D~d~dG~It~~EF~~ll~~~~ 248 (844)
++||.+.+-|||.++++++++... ..++-+ ++.....+-+|+-|....+...++-+=+..+++-..
T Consensus 10 RLYDT~tS~YITLedi~~lV~~g~~f~V~DakTg--eDiT~~iL~QII~E~E~~g~~~lp~~~L~qlIr~yg 79 (107)
T TIGR01848 10 RLYDTETSSYVTLEDIRDLVREGREFQVVDSKSG--DDLTRSILLQIIAEEESGGEPVLSTDFLTQIIRFYG 79 (107)
T ss_pred cccCCCccceeeHHHHHHHHHCCCeEEEEECCCC--chhHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhC
Confidence 479999999999999999996421 122222 344456667777777667777788777777775443
No 221
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=46.80 E-value=1.5e+02 Score=28.87 Aligned_cols=66 Identities=20% Similarity=0.246 Sum_probs=38.1
Q ss_pred HHHHHHhcccCCCCCCceeHHHHHHHHHHhc---cCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhh
Q 042007 138 GVFEALARRRKVNTENGITKEEVRMFWEDMT---KKDLDARLQIFFDMCDKNGDGILTEDEVREVIVLSA 204 (844)
Q Consensus 138 ~lf~~l~~~~~~d~dG~I~f~EF~~~l~~~~---~~~~~~~l~~~F~~fD~d~dG~It~eEl~~il~~~~ 204 (844)
++|..+..-- ..+...++-..|.+++.... ..-+...+..+|.-+-..+..+|+.++|.++|...+
T Consensus 3 ~~F~~f~~fG-~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~lA 71 (154)
T PF05517_consen 3 AVFKAFASFG-KKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAELA 71 (154)
T ss_dssp HHHHHHHCSS-TSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHHH
T ss_pred HHHHHHHHhc-CCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHHH
Confidence 4555443222 12344577777777776432 234556777778777655666788888877775443
No 222
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=46.00 E-value=74 Score=31.57 Aligned_cols=68 Identities=15% Similarity=0.113 Sum_probs=43.0
Q ss_pred HHHHHHHHHHhccCCCCcccHHHHHHHHHhhhccccccccccch--HHHHHHHHHHhCCCCCCceeHHHHHHHH
Q 042007 173 DARLQIFFDMCDKNGDGILTEDEVREVIVLSASENKLSNLKENS--STYAALIMEKLDPDCKGYIEMWQLEILL 244 (844)
Q Consensus 173 ~~~l~~~F~~fD~d~dG~It~eEl~~il~~~~~~~~l~~~~~~~--~e~~~~if~~~D~d~dG~It~~EF~~ll 244 (844)
.++.+.+|..|++.+.+.+|..|+.+|++..-... ++---. .-+...++ .+-.|.||.+.-|+.+.+.
T Consensus 95 p~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~---D~~GW~a~~~EW~~~y-~L~~d~dG~l~Ke~iR~vY 164 (174)
T PF05042_consen 95 PQKFEEIFSKYAKTGPDALTLRELWRMLKGNRNAN---DPFGWFAAFFEWGALY-ILAKDKDGFLSKEDIRGVY 164 (174)
T ss_pred HHHHHHHHHHhCCCCCCCcCHHHHHHHHHhccccC---CcchhhhhhhHHHHHH-HHHcCcCCcEeHHHHhhhc
Confidence 57899999999999999999999999996421111 000000 11111222 2346778999888776553
No 223
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.47 E-value=33 Score=39.05 Aligned_cols=88 Identities=17% Similarity=0.201 Sum_probs=56.2
Q ss_pred HHHHHHHHhcccCCCCCCceeHHHHHHHHHHhccCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhh-hcccccccccc
Q 042007 136 SVGVFEALARRRKVNTENGITKEEVRMFWEDMTKKDLDARLQIFFDMCDKNGDGILTEDEVREVIVLS-ASENKLSNLKE 214 (844)
Q Consensus 136 ~~~lf~~l~~~~~~d~dG~I~f~EF~~~l~~~~~~~~~~~l~~~F~~fD~d~dG~It~eEl~~il~~~-~~~~~l~~~~~ 214 (844)
.-.-|+.+. .|-.|.|+=.--..++.. ....-++|..+.++.|.|.||-+|..||...+-+. +..|.+...+.
T Consensus 233 YvnQFrtvQ----pDp~gfisGsaAknFFtK--Sklpi~ELshIWeLsD~d~DGALtL~EFcAAfHLVVaRkNgypLPe~ 306 (737)
T KOG1955|consen 233 YVNQFRTVQ----PDPHGFISGSAAKNFFTK--SKLPIEELSHIWELSDVDRDGALTLSEFCAAFHLVVARKNGYPLPES 306 (737)
T ss_pred HHhhhhccc----CCcccccccHHHHhhhhh--ccCchHHHHHHHhhcccCccccccHHHHHhhHhheeecccCCCCCCC
Confidence 333455444 466787776555444432 23456789999999999999999999999998543 34555554444
Q ss_pred chHHHHHHHHHHhCC
Q 042007 215 NSSTYAALIMEKLDP 229 (844)
Q Consensus 215 ~~~e~~~~if~~~D~ 229 (844)
...-..-.+++..|.
T Consensus 307 LP~~L~P~~lqaa~s 321 (737)
T KOG1955|consen 307 LPHCLHPNVLQAAAS 321 (737)
T ss_pred CccccChhHhhhhcc
Confidence 433344445555443
No 224
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=45.36 E-value=1.8e+02 Score=27.43 Aligned_cols=102 Identities=12% Similarity=0.084 Sum_probs=59.1
Q ss_pred HHHHHHhcccCCCCCCceeHHHHHHHHHH--hc-----cCChHHHHHHHHHHhccCC--CCcccHHHHHHHHHhhhc---
Q 042007 138 GVFEALARRRKVNTENGITKEEVRMFWED--MT-----KKDLDARLQIFFDMCDKNG--DGILTEDEVREVIVLSAS--- 205 (844)
Q Consensus 138 ~lf~~l~~~~~~d~dG~I~f~EF~~~l~~--~~-----~~~~~~~l~~~F~~fD~d~--dG~It~eEl~~il~~~~~--- 205 (844)
++++.|.+-+ .|-|.-|..+++. +. +.-.=..+..+|+....+. |..|+..|+..++.....
T Consensus 4 ~l~~~l~~~n------~IrfsaYRtA~KLR~lQk~~~l~lv~l~~v~~~f~~~~l~~~~d~~l~v~~l~~~L~~iy~~l~ 77 (127)
T PF09068_consen 4 ELMQELQDFN------NIRFSAYRTAMKLRFLQKRLCLDLVDLSNVIEAFREHGLNQSNDSSLSVSQLETLLSSIYEFLN 77 (127)
T ss_dssp HHHHHGGGGT------T-SSHHHHHHHHHHHHHHHTTGGG--HHHHHHHHHHTT---T-TSEEEHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh------hHHHHHhHHHHHHHHHHHHHhheeeeHHHHHHHHHHcCCCcccCCCCCHHHHHHHHHHHHHHHH
Confidence 4555565433 2888888888742 11 1122345677788777763 578999999999965431
Q ss_pred --ccccccc-----ccchHHHHHHHHHHhCCCCCCceeHHHHHHHHH
Q 042007 206 --ENKLSNL-----KENSSTYAALIMEKLDPDCKGYIEMWQLEILLR 245 (844)
Q Consensus 206 --~~~l~~~-----~~~~~e~~~~if~~~D~d~dG~It~~EF~~ll~ 245 (844)
.+....+ +.-++-.+.-++..+|++++|.|+.-+|+..+.
T Consensus 78 ~~~p~~~~i~~~~v~~a~~L~ln~Ll~vyD~~rtG~I~vls~KvaL~ 124 (127)
T PF09068_consen 78 KRLPTLHQIPSRPVDLAVDLLLNWLLNVYDSQRTGKIRVLSFKVALI 124 (127)
T ss_dssp HHSTTS--HH-----HHHHHHHHHHHHHH-TT--SEEEHHHHHHHHH
T ss_pred HHCCCCCCCCchhHHHHHHHHHHHHHHHhCCCCCCeeehhHHHHHHH
Confidence 1111111 122333456678889999999999999988764
No 225
>PF01292 Ni_hydr_CYTB: Prokaryotic cytochrome b561; InterPro: IPR011577 Cytochrome b561 is an integral membrane and electron transport protein, that binds two haem groups non-covalently. This domain is also found in a number of nickel-dependent hydrogenase subunits which are also B-type cytochromes that interact with quinones and anchor the hydrogenase to the membrane. Members of the 'eukaryotic cytochrome b561' family can be found in IPR004877 from INTERPRO.; GO: 0009055 electron carrier activity, 0016021 integral to membrane
Probab=45.23 E-value=1.7e+02 Score=28.74 Aligned_cols=22 Identities=23% Similarity=0.250 Sum_probs=19.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHhh
Q 042007 371 LNFHKLIALGIAIGSIVHTLFH 392 (844)
Q Consensus 371 ~~fHr~ig~~~~~~~~vH~~~~ 392 (844)
..+|.++|.++++..+++....
T Consensus 43 ~~~H~~~G~~~~~~~~~~l~~~ 64 (182)
T PF01292_consen 43 RNWHVIAGLLLFALLIFRLLWR 64 (182)
T ss_pred HhHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999998888765
No 226
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.07 E-value=35 Score=38.79 Aligned_cols=62 Identities=15% Similarity=0.164 Sum_probs=48.9
Q ss_pred HHHHHHHhccCCCCcccHHHHHHHHHhhhccccccccccchHHHHHHHHHHhCCCCCCceeHHHHHHHHHcC
Q 042007 176 LQIFFDMCDKNGDGILTEDEVREVIVLSASENKLSNLKENSSTYAALIMEKLDPDCKGYIEMWQLEILLRGM 247 (844)
Q Consensus 176 l~~~F~~fD~d~dG~It~eEl~~il~~~~~~~~l~~~~~~~~e~~~~if~~~D~d~dG~It~~EF~~ll~~~ 247 (844)
.-.-|+....|-+|.|+-.--++++.. .++. -+++..|.+-.|.|.||-+|++||...|.-.
T Consensus 233 YvnQFrtvQpDp~gfisGsaAknFFtK----Sklp------i~ELshIWeLsD~d~DGALtL~EFcAAfHLV 294 (737)
T KOG1955|consen 233 YVNQFRTVQPDPHGFISGSAAKNFFTK----SKLP------IEELSHIWELSDVDRDGALTLSEFCAAFHLV 294 (737)
T ss_pred HHhhhhcccCCcccccccHHHHhhhhh----ccCc------hHHHHHHHhhcccCccccccHHHHHhhHhhe
Confidence 334488888999999998888888743 2332 3457789999999999999999999998644
No 227
>PLN02292 ferric-chelate reductase
Probab=42.48 E-value=31 Score=42.19 Aligned_cols=55 Identities=24% Similarity=0.579 Sum_probs=45.7
Q ss_pred cccccc-CCChHHHHHHHHhhCCCCcEEEEEeCChhHHHHHHHHHHhhcCCCCceEEEEecCC
Q 042007 783 IKTHFA-RPNWRKVFGQLATDHESSRIGVFYCGSATLTKTLKELCLEFSLESPTRFDFHKENF 844 (844)
Q Consensus 783 ~~~~~g-RPd~~~v~~~~~~~~~~~~v~V~~CGP~~m~~~vr~~~~~~~~~~~~~~~~h~E~F 844 (844)
..+|+| |||+++++ ++..+++|||.+|||++|-.+|.+.|...+ ...++||.-+|
T Consensus 645 ~~~~~g~rp~~~~i~----~~~~~~~vgvlv~gp~~~~~~va~~c~s~~---~~~~~~~s~sf 700 (702)
T PLN02292 645 TNIHYGERPNLNKLL----VGLKGSSVGVLVCGPKKMRQKVAKICSSGL---AENLHFESISF 700 (702)
T ss_pred eeeeccCCCCHHHHH----HhcCCCceeEEEECcHHHHHHHHHHHhcCC---CcceeEEeecc
Confidence 357887 99999998 344577999999999999999999999865 45788888776
No 228
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=42.23 E-value=38 Score=40.09 Aligned_cols=77 Identities=13% Similarity=0.167 Sum_probs=50.6
Q ss_pred eeHHHHHHHHHHhcc-CChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhhccccccccccchHHHHHHHHHHhCCCCCC
Q 042007 155 ITKEEVRMFWEDMTK-KDLDARLQIFFDMCDKNGDGILTEDEVREVIVLSASENKLSNLKENSSTYAALIMEKLDPDCKG 233 (844)
Q Consensus 155 I~f~EF~~~l~~~~~-~~~~~~l~~~F~~fD~d~dG~It~eEl~~il~~~~~~~~l~~~~~~~~e~~~~if~~~D~d~dG 233 (844)
|+|+.|...+..... .....-++.+|+..|++++|.||..++-.-+..... .++.|....+|+-+|+++|
T Consensus 535 i~~~~f~~~f~~l~pw~~s~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~--------~~~~ek~~l~y~lh~~p~~- 605 (671)
T KOG4347|consen 535 IDYAQFLEVFRELLPWAVSLIFLERLFRLLDDSMTGLLTFKDLVSGLSILKA--------GDALEKLKLLYKLHDPPAD- 605 (671)
T ss_pred HHHhhHHHHhhccCchhHHHHHHHHHHHhcccCCcceeEHHHHHHHHHHHHh--------hhHHHHHHHHHhhccCCcc-
Confidence 344444444433322 133456889999999999999998887666543221 1234557788999999988
Q ss_pred ceeHHHH
Q 042007 234 YIEMWQL 240 (844)
Q Consensus 234 ~It~~EF 240 (844)
..+.||-
T Consensus 606 ~~d~e~~ 612 (671)
T KOG4347|consen 606 ELDREEV 612 (671)
T ss_pred ccccccc
Confidence 7766665
No 229
>PF01794 Ferric_reduct: Ferric reductase like transmembrane component; InterPro: IPR013130 This family includes a common region in the transmembrane proteins mammalian cytochrome b-245 heavy chain (gp91-phox), ferric reductase transmembrane component in yeast and respiratory burst oxidase from Arabidopsis thaliana. This may be a family of flavocytochromes capable of moving electrons across the plasma membrane [] that include a potential FAD binding domain. Mutations in the sequence of cytochrome b-245 heavy chain (gp91-phox) lead to the X-linked chronic granulomatous disease. The bacteriocidal ability of phagocytic cells is reduced and is characterised by the absence of a functional plasma membrane associated NADPH oxidase [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0016021 integral to membrane
Probab=40.92 E-value=56 Score=29.90 Aligned_cols=52 Identities=21% Similarity=0.434 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHhhhhhhhhccccccccccccccchhhHHHHHHHHHH-HHHHHHHhcc
Q 042007 435 GVLMLVIMAISFTLATHSFRRNVIKLPWIFHRFAGFNSFWYAHHLLVLA-YVLLFMHGFF 493 (844)
Q Consensus 435 G~~~~v~l~i~~~~s~~~~Rr~~~~~~~~~~~~~~ye~F~~~H~l~~~~-~v~l~~H~~~ 493 (844)
|.++++.+.++++++ .|.+.+. .....+++.+...|..++.+ +++..+|+..
T Consensus 2 G~~a~~~l~~~~~l~---~R~~~l~----~~~~~~~~~~~~~Hr~lg~~~~~~~~~H~~~ 54 (125)
T PF01794_consen 2 GILAFALLPLVFLLG---LRNSPLA----RLTGISFDRLLRFHRWLGRLAFFLALLHGVL 54 (125)
T ss_pred HHHHHHHHHHHHHHH---HhhhHHH----HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777776666655 2332210 01223499999999999864 5567889864
No 230
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=39.67 E-value=13 Score=37.14 Aligned_cols=57 Identities=19% Similarity=0.200 Sum_probs=40.8
Q ss_pred HHHHHhccC-CCCcccHHHHHHHHHhhhccccccccccchHHHHHHHHHHhCCCCCCceeHHHHHHHH
Q 042007 178 IFFDMCDKN-GDGILTEDEVREVIVLSASENKLSNLKENSSTYAALIMEKLDPDCKGYIEMWQLEILL 244 (844)
Q Consensus 178 ~~F~~fD~d-~dG~It~eEl~~il~~~~~~~~l~~~~~~~~e~~~~if~~~D~d~dG~It~~EF~~ll 244 (844)
+-|-..|.. .||++|-.||.-+-.-. + .++.-....|+..|.|+||+|+.+|+-..+
T Consensus 191 wqf~qld~~p~d~~~sh~el~pl~ap~-----i-----pme~c~~~f~e~cd~~nd~~ial~ew~~c~ 248 (259)
T KOG4004|consen 191 WQFGQLDQHPIDGYLSHTELAPLRAPL-----I-----PMEHCTTRFFETCDLDNDKYIALDEWAGCF 248 (259)
T ss_pred eeeccccCCCccccccccccccccCCc-----c-----cHHhhchhhhhcccCCCCCceeHHHhhccc
Confidence 336666765 79999999875433111 1 123445678999999999999999998766
No 231
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=39.15 E-value=65 Score=27.05 Aligned_cols=51 Identities=2% Similarity=-0.035 Sum_probs=36.4
Q ss_pred CCceeHHHHHHHHHHhccCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhhc
Q 042007 152 ENGITKEEVRMFWEDMTKKDLDARLQIFFDMCDKNGDGILTEDEVREVIVLSAS 205 (844)
Q Consensus 152 dG~I~f~EF~~~l~~~~~~~~~~~l~~~F~~fD~d~dG~It~eEl~~il~~~~~ 205 (844)
+-.++|..++.+++.... .++...+...|+.=..++|+.+||-+.++....
T Consensus 6 sp~~~F~~L~~~l~~~l~---~~~~~~l~~~Y~~~k~~kIsR~~fvr~lR~IVG 56 (70)
T PF12174_consen 6 SPWMPFPMLFSALSKHLP---PSKMDLLQKHYEEFKKKKISREEFVRKLRQIVG 56 (70)
T ss_pred CCcccHHHHHHHHHHHCC---HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 556888888777766543 344555556666667899999999999976543
No 232
>PLN02228 Phosphoinositide phospholipase C
Probab=39.10 E-value=1.1e+02 Score=36.40 Aligned_cols=69 Identities=13% Similarity=0.237 Sum_probs=46.2
Q ss_pred ChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhhccccccccccchHHHHHHHHHHhCCC----CCCceeHHHHHHHHHc
Q 042007 171 DLDARLQIFFDMCDKNGDGILTEDEVREVIVLSASENKLSNLKENSSTYAALIMEKLDPD----CKGYIEMWQLEILLRG 246 (844)
Q Consensus 171 ~~~~~l~~~F~~fD~d~dG~It~eEl~~il~~~~~~~~l~~~~~~~~e~~~~if~~~D~d----~dG~It~~EF~~ll~~ 246 (844)
.+.+++..+|..|-. ++.+|.++|..+|...-.. .....+.+..+++.+... ..|.++.+.|...|..
T Consensus 21 ~~~~ei~~if~~~s~--~~~~t~~~~~~FL~~~Q~~------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~s 92 (567)
T PLN02228 21 EPPVSIKRLFEAYSR--NGKMSFDELLRFVSEVQGE------RHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLFS 92 (567)
T ss_pred CCcHHHHHHHHHhcC--CCccCHHHHHHHHHHhcCC------ccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHhcC
Confidence 356778888888753 3579999988888542211 112245577778777543 3467999999999864
Q ss_pred C
Q 042007 247 M 247 (844)
Q Consensus 247 ~ 247 (844)
.
T Consensus 93 ~ 93 (567)
T PLN02228 93 D 93 (567)
T ss_pred c
Confidence 3
No 233
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=38.54 E-value=41 Score=39.51 Aligned_cols=63 Identities=14% Similarity=0.198 Sum_probs=42.8
Q ss_pred HHHHHHHHHHhccCCCCcccHHHHHHHHHhhhccccccccccchHHHHHHHHHHhCCCCCCceeHHHHHHHHH
Q 042007 173 DARLQIFFDMCDKNGDGILTEDEVREVIVLSASENKLSNLKENSSTYAALIMEKLDPDCKGYIEMWQLEILLR 245 (844)
Q Consensus 173 ~~~l~~~F~~fD~d~dG~It~eEl~~il~~~~~~~~l~~~~~~~~e~~~~if~~~D~d~dG~It~~EF~~ll~ 245 (844)
.+.+...|..||.|+||.++.+|++.+........-.+-..+ +. --.+..|.++++-|...+.
T Consensus 314 ~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P~~pW~~~~~~---~~-------t~~~~~G~ltl~g~l~~Ws 376 (625)
T KOG1707|consen 314 YRFLVDVFEKFDRDNDGALSPEELKDLFSTAPGSPWTSSPYK---DS-------TVKNERGWLTLNGFLSQWS 376 (625)
T ss_pred HHHHHHHHHhccCCCCCCcCHHHHHHHhhhCCCCCCCCCccc---cc-------ceecccceeehhhHHHHHH
Confidence 457889999999999999999999999965433221110010 00 1123689999999977553
No 234
>PF00033 Cytochrom_B_N: Cytochrome b(N-terminal)/b6/petB; InterPro: IPR016174 This entry represents a haem-binding domain with a 4-helical bundle structure that is found in transmembrane di-haem cytochromes. The domain contains four transmembrane helices in an up-and-down bundle, and binds two haem groups in between the helices; three of the four haem-binding residues is conserved between family members. Proteins containing this domain include: N-terminal domain of mitochondrial cytochrome b subunit, in which the domain contains an extra transmembrane linker helix that is absent in plant and cyanobacteria subunits []. Cytochrome b6 subunit of the cytochrome b6f complex, which provides the electronic connection between the photosystems I and II reaction centres of oxygenic photosynthesis, and generates a transmembrane electrochemical proton gradient for adenosine triphosphate synthesis []. Cytochrome gamma subunit of formate dehydrogenase-N (Fdn-N), which acts as a major component of Escherichia coli nitrate respiration []. ; GO: 0022904 respiratory electron transport chain, 0016020 membrane; PDB: 1KQG_C 1KQF_C.
Probab=35.96 E-value=1.3e+02 Score=29.55 Aligned_cols=25 Identities=12% Similarity=0.098 Sum_probs=22.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhh
Q 042007 370 NLNFHKLIALGIAIGSIVHTLFHLL 394 (844)
Q Consensus 370 ~~~fHr~ig~~~~~~~~vH~~~~~~ 394 (844)
...+|+++|.+.++..+++.+..+.
T Consensus 46 ~~~~H~~~G~~~~~~~~~~~~~~~~ 70 (188)
T PF00033_consen 46 LRWLHFSLGIVFLALFLLRILWRLF 70 (188)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4789999999999999999987763
No 235
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=35.67 E-value=50 Score=27.03 Aligned_cols=22 Identities=9% Similarity=0.289 Sum_probs=19.7
Q ss_pred HHhccCCCCcccHHHHHHHHHh
Q 042007 181 DMCDKNGDGILTEDEVREVIVL 202 (844)
Q Consensus 181 ~~fD~d~dG~It~eEl~~il~~ 202 (844)
++||.+.+.+||.++++++++.
T Consensus 10 RLYDT~~s~YiTL~di~~lV~~ 31 (64)
T PF07879_consen 10 RLYDTETSSYITLEDIAQLVRE 31 (64)
T ss_pred ccccCCCceeEeHHHHHHHHHC
Confidence 4799999999999999999964
No 236
>TIGR01583 formate-DH-gamm formate dehydrogenase, gamma subunit. NiFe-hydrogenase and thiosulfate reductase contain homologous gamma subunits, and these can be found scoring in the noise of this model.
Probab=35.48 E-value=2.1e+02 Score=29.15 Aligned_cols=24 Identities=21% Similarity=0.115 Sum_probs=18.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhh
Q 042007 370 NLNFHKLIALGIAIGSIVHTLFHL 393 (844)
Q Consensus 370 ~~~fHr~ig~~~~~~~~vH~~~~~ 393 (844)
....|+++|.++++..+.+...+.
T Consensus 48 ~~~~H~~~g~~~~~~~i~~~~~~~ 71 (204)
T TIGR01583 48 AKNLHPFAGILFFISIIPMFLKWW 71 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356899999999888888866443
No 237
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.75 E-value=28 Score=38.27 Aligned_cols=63 Identities=19% Similarity=0.304 Sum_probs=47.2
Q ss_pred hHHHHHHHHHHhccCCCCcccHHHHHHHHHhhhccccccccccchHHHHHHHHHHhCCCCCCceeHHHHH
Q 042007 172 LDARLQIFFDMCDKNGDGILTEDEVREVIVLSASENKLSNLKENSSTYAALIMEKLDPDCKGYIEMWQLE 241 (844)
Q Consensus 172 ~~~~l~~~F~~fD~d~dG~It~eEl~~il~~~~~~~~l~~~~~~~~e~~~~if~~~D~d~dG~It~~EF~ 241 (844)
+.+.++.+|+.||..++|+|+-+-++++++.... ..+ -.+++..|=+.+|+++-|.|-.++|.
T Consensus 307 ~s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N~--~vs-----e~a~v~l~~~~l~pE~~~iil~~d~l 369 (449)
T KOG2871|consen 307 PSEQLRRNFHAYDPEDNNFISCSGLQIVMTALNR--LVS-----EPAYVMLMRQPLDPESLGIILLEDFL 369 (449)
T ss_pred CCHHHHhhhhccCccCCCeeecHHHHHHHHHhcc--ccc-----CHHHHHHhcCccChhhcceEEecccc
Confidence 4678999999999999999999999999965320 122 13456666667888888888777754
No 238
>PLN02952 phosphoinositide phospholipase C
Probab=34.20 E-value=1.4e+02 Score=35.75 Aligned_cols=83 Identities=14% Similarity=0.089 Sum_probs=53.1
Q ss_pred CCCCcCHHHHhhcc---CCCC--CHHHHHHHHHHHhcccCCCCCCceeHHHHHHHHHHhccC--ChHHHHHHHHHHhc--
Q 042007 114 VSGRLPKDKFGICV---GMGE--STEFSVGVFEALARRRKVNTENGITKEEVRMFWEDMTKK--DLDARLQIFFDMCD-- 184 (844)
Q Consensus 114 ~dG~is~~eF~~~l---g~~~--~~~~~~~lf~~l~~~~~~d~dG~I~f~EF~~~l~~~~~~--~~~~~l~~~F~~fD-- 184 (844)
+.|.++.+||..+. .... ....+.++|..+.. +++.++.++|..++...... ...+..+.+|+.|-
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~-----~~~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~~~~ 87 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSV-----GGGHMGADQLRRFLVLHQDELDCTLAEAQRIVEEVINR 87 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhC-----CCCccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHhh
Confidence 46899999997544 2221 34567777876652 23569999999999876542 33445555554331
Q ss_pred -----cCCCCcccHHHHHHHHH
Q 042007 185 -----KNGDGILTEDEVREVIV 201 (844)
Q Consensus 185 -----~d~dG~It~eEl~~il~ 201 (844)
..+.+.++.++|...|.
T Consensus 88 ~~~~~~~~~~~l~~~~F~~~l~ 109 (599)
T PLN02952 88 RHHVTRYTRHGLNLDDFFHFLL 109 (599)
T ss_pred ccccccccccCcCHHHHHHHHc
Confidence 12335688888888874
No 239
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=33.78 E-value=18 Score=30.16 Aligned_cols=56 Identities=9% Similarity=0.133 Sum_probs=33.4
Q ss_pred HHHHHHHHccc-CCCCcCHHHHhhccCCCCCHHHHHHHHHHHhcccCC---CCCCceeHHHHHH
Q 042007 103 RSIERRFQQFA-VSGRLPKDKFGICVGMGESTEFSVGVFEALARRRKV---NTENGITKEEVRM 162 (844)
Q Consensus 103 ~~l~~~F~~ld-~dG~is~~eF~~~lg~~~~~~~~~~lf~~l~~~~~~---d~dG~I~f~EF~~ 162 (844)
++|...|+.++ +.+.|+.+||++.|.-. ..+++ .+.|....+. ...|..||..|+.
T Consensus 6 eqv~~aFr~lA~~KpyVT~~dLr~~l~pe-~aey~---~~~Mp~~~~~~~~~~~~~~DY~~f~~ 65 (69)
T PF08726_consen 6 EQVEEAFRALAGGKPYVTEEDLRRSLTPE-QAEYC---ISRMPPYEGPDGDAIPGAYDYESFTN 65 (69)
T ss_dssp HHHHHHHHHHCTSSSCEEHHHHHHHS-CC-CHHHH---HCCSEC--SSS----TTEEECHHHHC
T ss_pred HHHHHHHHHHHcCCCcccHHHHHHHcCcH-HHHHH---HHHCcccCCCCcCCCCCCcCHHHHHH
Confidence 45677888777 77999999999988433 32333 2223322211 1235689988875
No 240
>KOG4826 consensus C-8,7 sterol isomerase [Lipid transport and metabolism]
Probab=33.73 E-value=61 Score=32.93 Aligned_cols=20 Identities=15% Similarity=0.378 Sum_probs=15.2
Q ss_pred hhHHHHHHHHHHHHHHHHHh
Q 042007 372 NFHKLIALGIAIGSIVHTLF 391 (844)
Q Consensus 372 ~fHr~ig~~~~~~~~vH~~~ 391 (844)
.+-||.....++.+.+|.+.
T Consensus 54 ~L~~w~l~Wl~vsGlih~v~ 73 (229)
T KOG4826|consen 54 VLDKWVLCWLAVSGLIHLVL 73 (229)
T ss_pred CCcchhhHHHHhhCeeeeEE
Confidence 45567788888888889865
No 241
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=33.24 E-value=1.6e+02 Score=27.79 Aligned_cols=50 Identities=8% Similarity=0.240 Sum_probs=32.7
Q ss_pred CCceeHHHHHHHHHHhc-------c-----------CChHHHHHHHHHHhccCCCCcccHHHHHHHHH
Q 042007 152 ENGITKEEVRMFWEDMT-------K-----------KDLDARLQIFFDMCDKNGDGILTEDEVREVIV 201 (844)
Q Consensus 152 dG~I~f~EF~~~l~~~~-------~-----------~~~~~~l~~~F~~fD~d~dG~It~eEl~~il~ 201 (844)
|..++-.|....+..+- + ...+--+.++..+||.+++|+|+.-+++..+.
T Consensus 57 d~~l~v~~l~~~L~~iy~~l~~~~p~~~~i~~~~v~~a~~L~ln~Ll~vyD~~rtG~I~vls~KvaL~ 124 (127)
T PF09068_consen 57 DSSLSVSQLETLLSSIYEFLNKRLPTLHQIPSRPVDLAVDLLLNWLLNVYDSQRTGKIRVLSFKVALI 124 (127)
T ss_dssp TSEEEHHHHHHHHHHHHHHHHHHSTTS--HH-----HHHHHHHHHHHHHH-TT--SEEEHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCchhHHHHHHHHHHHHHHHhCCCCCCeeehhHHHHHHH
Confidence 45577777777664332 0 11123588999999999999999999988774
No 242
>PLN02222 phosphoinositide phospholipase C 2
Probab=33.17 E-value=1.4e+02 Score=35.75 Aligned_cols=68 Identities=12% Similarity=0.205 Sum_probs=46.2
Q ss_pred hHHHHHHHHHHhccCCCCcccHHHHHHHHHhhhccccccccccchHHHHHHHHHHhCC-CCCCceeHHHHHHHHHcC
Q 042007 172 LDARLQIFFDMCDKNGDGILTEDEVREVIVLSASENKLSNLKENSSTYAALIMEKLDP-DCKGYIEMWQLEILLRGM 247 (844)
Q Consensus 172 ~~~~l~~~F~~fD~d~dG~It~eEl~~il~~~~~~~~l~~~~~~~~e~~~~if~~~D~-d~dG~It~~EF~~ll~~~ 247 (844)
..+++..+|..|-. ++.+|.++|..+|...-... ...++.+..+|+.+.. .+.+.++++.|...|...
T Consensus 23 ~~~ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~------~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~s~ 91 (581)
T PLN02222 23 APREIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQD------KATREDAQSIINSASSLLHRNGLHLDAFFKYLFGD 91 (581)
T ss_pred CcHHHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCc------cCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhcCC
Confidence 44588888988853 47999999999885432211 1234566677776532 245679999999999753
No 243
>PF04876 Tenui_NCP: Tenuivirus major non-capsid protein; InterPro: IPR006960 This entry contains the tenuivirus major non-capsid protein. Proteins accumulate in large amounts in tenuivirus infected cells. They are found in the inclusion bodies that are formed after infection [].
Probab=32.97 E-value=1.5e+02 Score=28.55 Aligned_cols=69 Identities=12% Similarity=0.042 Sum_probs=39.5
Q ss_pred CCCceeHHHHHHHHHHhccCChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhhccccccccccchHHHHHHHHHHhCCC
Q 042007 151 TENGITKEEVRMFWEDMTKKDLDARLQIFFDMCDKNGDGILTEDEVREVIVLSASENKLSNLKENSSTYAALIMEKLDPD 230 (844)
Q Consensus 151 ~dG~I~f~EF~~~l~~~~~~~~~~~l~~~F~~fD~d~dG~It~eEl~~il~~~~~~~~l~~~~~~~~e~~~~if~~~D~d 230 (844)
.+|.|++.+|..+|..-... + ..+.=..+..++|++++ .+.+..|++.+..+
T Consensus 96 ~n~~i~~~~ff~~lQ~~lGd-------W-IT~~~Lkh~n~MSk~Qi--------------------k~L~~~Ii~~akae 147 (175)
T PF04876_consen 96 TNGLIDIGKFFDILQPKLGD-------W-ITKNFLKHPNRMSKDQI--------------------KTLCEQIIEMAKAE 147 (175)
T ss_pred cccceeHHHHHHHHHHHhhh-------H-HHHHHHhccchhhHHHH--------------------HHHHHHHHHHHhcc
Confidence 46779999999888532210 0 11111113344444444 44455566665544
Q ss_pred CCCceeHHHHHHHHHcCCCC
Q 042007 231 CKGYIEMWQLEILLRGMVNE 250 (844)
Q Consensus 231 ~dG~It~~EF~~ll~~~~~~ 250 (844)
+ ++-|+++.++..+|.|
T Consensus 148 ~---~dtE~Ye~vwkKmPaY 164 (175)
T PF04876_consen 148 S---SDTEHYEKVWKKMPAY 164 (175)
T ss_pred C---CchHHHHHHHHHhhHH
Confidence 3 4668889999999865
No 244
>cd07316 terB_like_DjlA N-terminal tellurium resistance protein terB-like domain of heat shock DnaJ-like proteins. Tellurium resistance terB-like domain of the DnaJ-like DjlA proteins. This family represents the terB-like domain of DjlA-like proteins, a subgroup of heat shock DnaJ-like proteins. Escherichia coli DjlA is a type III membrane protein with a small N-terminal transmembrane region and DnaJ-like domain on the extreme C-terminus. Overproduction has been shown to activate the RcsC pathway, which regulates the production of the capsular exopolysaccharide colanic acid. The specific function of this domain is unknown.
Probab=31.89 E-value=2.2e+02 Score=25.27 Aligned_cols=80 Identities=18% Similarity=0.251 Sum_probs=43.6
Q ss_pred CCCCcCHHHHhhcc----CCCCCHHHHHHHHHHHhcccCCCCCCceeHHHHHHHHHHhccCChHHH---HHHHHHHhccC
Q 042007 114 VSGRLPKDKFGICV----GMGESTEFSVGVFEALARRRKVNTENGITKEEVRMFWEDMTKKDLDAR---LQIFFDMCDKN 186 (844)
Q Consensus 114 ~dG~is~~eF~~~l----g~~~~~~~~~~lf~~l~~~~~~d~dG~I~f~EF~~~l~~~~~~~~~~~---l~~~F~~fD~d 186 (844)
-||.++.+|...+- ..........++.+.+..... +. .++.+|...+......+++.+ ++.++.+--
T Consensus 12 aDG~v~~~E~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~l~~~~~~~~~~r~~~l~~l~~vA~-- 85 (106)
T cd07316 12 ADGRVSEAEIQAARALMDQMGLDAEARREAIRLFNEGKE---SD-FGLEEYARQFRRACGGRPELLLQLLEFLFQIAY-- 85 (106)
T ss_pred ccCCcCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc---CC-CCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--
Confidence 47888877754332 222222334455554432211 22 678888888766433344444 444555443
Q ss_pred CCCcccHHHHHHH
Q 042007 187 GDGILTEDEVREV 199 (844)
Q Consensus 187 ~dG~It~eEl~~i 199 (844)
.||.+++.|-.-+
T Consensus 86 ADG~~~~~E~~~l 98 (106)
T cd07316 86 ADGELSEAERELL 98 (106)
T ss_pred HcCCCCHHHHHHH
Confidence 5799999886543
No 245
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=31.81 E-value=15 Score=38.71 Aligned_cols=14 Identities=21% Similarity=0.876 Sum_probs=0.0
Q ss_pred eeEeeeecchhheh
Q 042007 505 TWIYIFFPVLFYAN 518 (844)
Q Consensus 505 ~w~~~~~~~~l~~~ 518 (844)
+|..+..+++||.+
T Consensus 171 ~WL~LFlaiLIWlY 184 (381)
T PF05297_consen 171 YWLLLFLAILIWLY 184 (381)
T ss_dssp --------------
T ss_pred HHHHHHHHHHHHHH
Confidence 56655556777765
No 246
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=31.76 E-value=55 Score=31.37 Aligned_cols=46 Identities=15% Similarity=0.222 Sum_probs=0.0
Q ss_pred CcccHHHHHHHHH-hhhccccccccccchHHHHHHHHHHhCCCCC-------CceeHHHHHHHHH
Q 042007 189 GILTEDEVREVIV-LSASENKLSNLKENSSTYAALIMEKLDPDCK-------GYIEMWQLEILLR 245 (844)
Q Consensus 189 G~It~eEl~~il~-~~~~~~~l~~~~~~~~e~~~~if~~~D~d~d-------G~It~~EF~~ll~ 245 (844)
+.||++||.++-+ ...+..++. .++++|..||. +.|+||.|+.+|.
T Consensus 6 ~~lsp~eF~qLq~y~eys~kklk-----------dvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~ 59 (138)
T PF14513_consen 6 VSLSPEEFAQLQKYSEYSTKKLK-----------DVLKEFHGDGSLAKYNPEEPIDYEGFKLFMK 59 (138)
T ss_dssp S-S-HHHHHHHHHHHHH----HH-----------HHHHHH-HTSGGGGGEETTEE-HHHHHHHHH
T ss_pred eccCHHHHHHHHHHHHHHHHHHH-----------HHHHHHhcCCcccccCCCCCcCHHHHHHHHH
No 247
>PF14358 DUF4405: Domain of unknown function (DUF4405)
Probab=31.60 E-value=52 Score=26.76 Aligned_cols=24 Identities=25% Similarity=0.068 Sum_probs=21.1
Q ss_pred chhhhHHHHHHHHHHHHHHHHHhh
Q 042007 369 DNLNFHKLIALGIAIGSIVHTLFH 392 (844)
Q Consensus 369 ~~~~fHr~ig~~~~~~~~vH~~~~ 392 (844)
.....|.|.|..+++++++|.+.|
T Consensus 40 ~~~~iH~~~g~~~~~l~~~Hl~lh 63 (64)
T PF14358_consen 40 FWRNIHLWAGYLFLILIILHLGLH 63 (64)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 346899999999999999999865
No 248
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=30.76 E-value=1.7e+02 Score=25.98 Aligned_cols=81 Identities=12% Similarity=0.126 Sum_probs=46.2
Q ss_pred CCCCcCHHHHhhcc----C-CCCCHHHHHHHHHHHhcccCCCCCCceeHHHHHHHHHHhc-cCChHHHHHHHHHHhccCC
Q 042007 114 VSGRLPKDKFGICV----G-MGESTEFSVGVFEALARRRKVNTENGITKEEVRMFWEDMT-KKDLDARLQIFFDMCDKNG 187 (844)
Q Consensus 114 ~dG~is~~eF~~~l----g-~~~~~~~~~~lf~~l~~~~~~d~dG~I~f~EF~~~l~~~~-~~~~~~~l~~~F~~fD~d~ 187 (844)
-||.++.+|...+- . +..+.....++.+...... +...++.+|...+.... ......-++.++.+- ..
T Consensus 12 aDG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~r~~~l~~L~~vA--~A 85 (104)
T cd07313 12 ADGEYDEEERAAIDRLLAERFGLDAEEAAELLAEAEALE----EEAPDLYEFTSLIKEHFDYEERLELVEALWEVA--YA 85 (104)
T ss_pred HcCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH----HhCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHH--Hh
Confidence 47888887754332 1 1223345566666444221 34478899988776533 222233455555554 36
Q ss_pred CCcccHHHHHHHH
Q 042007 188 DGILTEDEVREVI 200 (844)
Q Consensus 188 dG~It~eEl~~il 200 (844)
||.+++.|-.-+-
T Consensus 86 DG~~~~~E~~~l~ 98 (104)
T cd07313 86 DGELDEYEEHLIR 98 (104)
T ss_pred cCCCCHHHHHHHH
Confidence 7999998866444
No 249
>CHL00070 petB cytochrome b6
Probab=30.47 E-value=2.7e+02 Score=28.81 Aligned_cols=23 Identities=17% Similarity=0.160 Sum_probs=19.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhh
Q 042007 371 LNFHKLIALGIAIGSIVHTLFHL 393 (844)
Q Consensus 371 ~~fHr~ig~~~~~~~~vH~~~~~ 393 (844)
..+|.|-|-++++.+.+|..--+
T Consensus 83 R~~H~~gas~~~~~~~lH~~r~~ 105 (215)
T CHL00070 83 RSVHRWSASMMVLMMILHVFRVY 105 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 36899999999999999987544
No 250
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=29.78 E-value=48 Score=20.92 Aligned_cols=16 Identities=31% Similarity=0.501 Sum_probs=11.4
Q ss_pred ccCCCCcccHHHHHHH
Q 042007 184 DKNGDGILTEDEVREV 199 (844)
Q Consensus 184 D~d~dG~It~eEl~~i 199 (844)
|.|+||.|+.-++..+
T Consensus 1 DvN~DG~vna~D~~~l 16 (21)
T PF00404_consen 1 DVNGDGKVNAIDLALL 16 (21)
T ss_dssp -TTSSSSSSHHHHHHH
T ss_pred CCCCCCcCCHHHHHHH
Confidence 6788999888776543
No 251
>PLN02844 oxidoreductase/ferric-chelate reductase
Probab=29.73 E-value=64 Score=39.67 Aligned_cols=56 Identities=20% Similarity=0.209 Sum_probs=41.2
Q ss_pred cccchhHHHHHHHHHHHHHHhhhhhhhhcccccccccccccc--chhhHHHHHHHHH-HHHHHHHHhc
Q 042007 428 IHTVGYTGVLMLVIMAISFTLATHSFRRNVIKLPWIFHRFAG--FNSFWYAHHLLVL-AYVLLFMHGF 492 (844)
Q Consensus 428 ~~~~~~tG~~~~v~l~i~~~~s~~~~Rr~~~~~~~~~~~~~~--ye~F~~~H~l~~~-~~v~l~~H~~ 492 (844)
..+...+|+++..+|.++++++. |.+ ++.+++| ||.|...|+.++- ++++..+|+.
T Consensus 153 ~~va~R~G~la~~~Lpll~llv~---Rnn------~l~~ltGis~e~~i~fHrWlGr~~~llallH~i 211 (722)
T PLN02844 153 LRVATRFGLLAEACLALLLLPVL---RGL------ALFRLLGIQFEASVRYHVWLGTSMIFFATVHGA 211 (722)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh---ccc------HHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555679998888888877765 433 3556666 9999999999875 4566788986
No 252
>PRK03735 cytochrome b6; Provisional
Probab=29.43 E-value=2.9e+02 Score=28.85 Aligned_cols=23 Identities=22% Similarity=0.143 Sum_probs=19.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhh
Q 042007 371 LNFHKLIALGIAIGSIVHTLFHL 393 (844)
Q Consensus 371 ~~fHr~ig~~~~~~~~vH~~~~~ 393 (844)
...|.|-|-++++.+.+|..--+
T Consensus 91 R~~H~~gas~~~~~~~lH~~r~~ 113 (223)
T PRK03735 91 RGMHHWGASLVIVMMFLHTLRVF 113 (223)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHH
Confidence 36899999999999999987544
No 253
>PLN02230 phosphoinositide phospholipase C 4
Probab=28.52 E-value=2e+02 Score=34.48 Aligned_cols=70 Identities=10% Similarity=0.135 Sum_probs=44.9
Q ss_pred ChHHHHHHHHHHhccCCCCcccHHHHHHHHHhhhccccccccccchHHHHHHHHHHhC-------CCCCCceeHHHHHHH
Q 042007 171 DLDARLQIFFDMCDKNGDGILTEDEVREVIVLSASENKLSNLKENSSTYAALIMEKLD-------PDCKGYIEMWQLEIL 243 (844)
Q Consensus 171 ~~~~~l~~~F~~fD~d~dG~It~eEl~~il~~~~~~~~l~~~~~~~~e~~~~if~~~D-------~d~dG~It~~EF~~l 243 (844)
.+..+++.+|..|-.++ +++|.++|.++|...-.... +...+.+..+++++- .-+.+.++++.|...
T Consensus 26 ~p~~ei~~lf~~~s~~~-~~mt~~~l~~FL~~~Q~~~~-----~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~y 99 (598)
T PLN02230 26 GPVADVRDLFEKYADGD-AHMSPEQLQKLMAEEGGGEG-----ETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYY 99 (598)
T ss_pred CCcHHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcc-----cCCHHHHHHHHHHHHhhccccccccccccCHHHHHHH
Confidence 35578999999995444 79999999999964321111 112344555554431 223456999999998
Q ss_pred HHc
Q 042007 244 LRG 246 (844)
Q Consensus 244 l~~ 246 (844)
|..
T Consensus 100 L~s 102 (598)
T PLN02230 100 LFS 102 (598)
T ss_pred HcC
Confidence 865
No 254
>PF13706 PepSY_TM_3: PepSY-associated TM helix
Probab=28.13 E-value=62 Score=23.36 Aligned_cols=21 Identities=19% Similarity=0.205 Sum_probs=15.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHh
Q 042007 371 LNFHKLIALGIAIGSIVHTLF 391 (844)
Q Consensus 371 ~~fHr~ig~~~~~~~~vH~~~ 391 (844)
...|+|+|.++.++..+=.++
T Consensus 5 ~~~H~W~Gl~~g~~l~~~~~t 25 (37)
T PF13706_consen 5 RKLHRWLGLILGLLLFVIFLT 25 (37)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 578999999887766655443
No 255
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=27.56 E-value=69 Score=34.40 Aligned_cols=83 Identities=13% Similarity=0.100 Sum_probs=45.7
Q ss_pred CCCCcCHHHHhhcc--------C--CCC--CHHHHHHHHH---HHhcccCCCCCCceeHHHHHHHHHHhccCChHHHHHH
Q 042007 114 VSGRLPKDKFGICV--------G--MGE--STEFSVGVFE---ALARRRKVNTENGITKEEVRMFWEDMTKKDLDARLQI 178 (844)
Q Consensus 114 ~dG~is~~eF~~~l--------g--~~~--~~~~~~~lf~---~l~~~~~~d~dG~I~f~EF~~~l~~~~~~~~~~~l~~ 178 (844)
.||.++-.|+...+ . ..+ -++..++.++ -....-++|.|..|+++||+..-..-.-+.+.+...
T Consensus 257 sDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~t~~kef~~p~e~WE- 335 (442)
T KOG3866|consen 257 SDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLNDTDNKEFNPPKEEWE- 335 (442)
T ss_pred CcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhhhhcccCCcchhhh-
Confidence 78999999887776 1 111 1112222222 122222368899999999998765433223222221
Q ss_pred HHHHhccCCCCcccHHHHHHHHHh
Q 042007 179 FFDMCDKNGDGILTEDEVREVIVL 202 (844)
Q Consensus 179 ~F~~fD~d~dG~It~eEl~~il~~ 202 (844)
+.+..-.-|.+||++.=+.
T Consensus 336 -----tl~q~~~yTeEEL~~fE~e 354 (442)
T KOG3866|consen 336 -----TLGQKKVYTEEELQQFERE 354 (442)
T ss_pred -----hhcccccccHHHHHHHHHH
Confidence 2233456678888776543
No 256
>PRK10179 formate dehydrogenase-N subunit gamma; Provisional
Probab=26.80 E-value=4e+02 Score=27.56 Aligned_cols=18 Identities=11% Similarity=0.255 Sum_probs=13.2
Q ss_pred hhhHHHHHHHHHHHHHHH
Q 042007 371 LNFHKLIALGIAIGSIVH 388 (844)
Q Consensus 371 ~~fHr~ig~~~~~~~~vH 388 (844)
...|.++|.+.++..++.
T Consensus 54 r~iH~~~g~vf~~~~~~~ 71 (217)
T PRK10179 54 RILHPFFGIAIFVALMFM 71 (217)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 457999999877666554
No 257
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.22 E-value=66 Score=32.68 Aligned_cols=34 Identities=15% Similarity=0.205 Sum_probs=27.4
Q ss_pred cchhHHhhcCCceeehhHHHHHHHHHHHHHHHHhhc
Q 042007 280 SMTTEFIFDNFKRIWIVTLWLAVNLGLFMWKFIELQ 315 (844)
Q Consensus 280 ~~~~~~~~~~~~~~~~i~~~~~~~v~l~~~~~~~y~ 315 (844)
-.+++|+.+|. .++++++++...++|-|+|++-.
T Consensus 12 ~~ik~wwkeNG--k~li~gviLg~~~lfGW~ywq~~ 45 (207)
T COG2976 12 EAIKDWWKENG--KALIVGVILGLGGLFGWRYWQSH 45 (207)
T ss_pred HHHHHHHHHCC--chhHHHHHHHHHHHHHHHHHHHH
Confidence 46788888888 56678888899999999998743
No 258
>PF13172 PepSY_TM_1: PepSY-associated TM helix
Probab=26.14 E-value=1.1e+02 Score=21.55 Aligned_cols=23 Identities=22% Similarity=0.164 Sum_probs=18.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhh
Q 042007 371 LNFHKLIALGIAIGSIVHTLFHL 393 (844)
Q Consensus 371 ~~fHr~ig~~~~~~~~vH~~~~~ 393 (844)
..+|+|+|..+.+..++=++.-+
T Consensus 6 ~~~H~~~g~~~~~~ll~~~lTG~ 28 (34)
T PF13172_consen 6 RKIHRWLGLIAAIFLLLLALTGA 28 (34)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 57999999999888887776554
No 259
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=25.19 E-value=2e+02 Score=33.03 Aligned_cols=55 Identities=15% Similarity=0.247 Sum_probs=30.7
Q ss_pred eEEEEEcccchhchHHHHHHHHHHhhhcCcchhhhcCCCCCCCcEEEEEEEeCCCChhhhHHHHHHHHhccC
Q 042007 666 ILLLIGLGIGATPFISIIKDLLNHIKSHERDTEFLENGFKKGPERAYFYWVTREQGSFEWFKGVMDDIADHD 737 (844)
Q Consensus 666 ~vvlVagGiGITp~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~~v~l~W~~R~~~~~~wf~~~L~~l~~~~ 737 (844)
.+++||||+=.||-+ ++-++.+.. . .+.+++.|+=+ +++..+-.....+.+.+..
T Consensus 5 KI~iIGgGSt~tp~~-v~g~l~~~e-~-------------l~~~el~L~Di--d~~r~~~i~~~~~~~v~~~ 59 (442)
T COG1486 5 KIVIIGGGSTYTPKL-LLGDLARTE-E-------------LPVRELALYDI--DEERLKIIAILAKKLVEEA 59 (442)
T ss_pred eEEEECCCccccHHH-HHHHHhcCc-c-------------CCcceEEEEeC--CHHHHHHHHHHHHHHHHhh
Confidence 589999999999864 344443321 1 23455655544 3344444445555555543
No 260
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=25.17 E-value=1.7e+02 Score=26.36 Aligned_cols=62 Identities=21% Similarity=0.320 Sum_probs=40.1
Q ss_pred HHHHHHHHHhccCCCCcccHHHHHHHHHhhhccccccccccchHHHHHHHHHHh----CCCCCCceeHHHHHHHHHcCCC
Q 042007 174 ARLQIFFDMCDKNGDGILTEDEVREVIVLSASENKLSNLKENSSTYAALIMEKL----DPDCKGYIEMWQLEILLRGMVN 249 (844)
Q Consensus 174 ~~l~~~F~~fD~d~dG~It~eEl~~il~~~~~~~~l~~~~~~~~e~~~~if~~~----D~d~dG~It~~EF~~ll~~~~~ 249 (844)
..++.=|+.+-+ ||++..++|-+.|.+. +.+|.+.++|+.+ ... .+.||-+|+.++..++.+
T Consensus 30 ~~VE~RFd~La~--dG~L~rs~Fg~CIGM~-----------dSkeFA~eLFdALaRrr~i~-~~~I~k~eL~efW~qisD 95 (100)
T PF08414_consen 30 KEVEKRFDKLAK--DGLLPRSDFGECIGMK-----------DSKEFAGELFDALARRRGIK-GDSITKDELKEFWEQISD 95 (100)
T ss_dssp HHHHHHHHHH-B--TTBEEGGGHHHHHT-------------S-HHHHHHHHHHHHHHTT---SSEE-HHHHHHHHHHHH-
T ss_pred HHHHHHHHHhCc--CCcccHHHHHHhcCCc-----------ccHHHHHHHHHHHHHhcCCc-cCCcCHHHHHHHHHHhhc
Confidence 455566777766 8999999999888431 2355666666665 333 467999999999887643
No 261
>PLN02228 Phosphoinositide phospholipase C
Probab=23.62 E-value=1.4e+02 Score=35.48 Aligned_cols=62 Identities=15% Similarity=0.289 Sum_probs=36.9
Q ss_pred HHHHHHHcccCCCCcCHHHHhhcc----CCC-CCHHHHHHHHHHHhcccCCCCCCceeHHHHHHHHH
Q 042007 104 SIERRFQQFAVSGRLPKDKFGICV----GMG-ESTEFSVGVFEALARRRKVNTENGITKEEVRMFWE 165 (844)
Q Consensus 104 ~l~~~F~~ld~dG~is~~eF~~~l----g~~-~~~~~~~~lf~~l~~~~~~d~dG~I~f~EF~~~l~ 165 (844)
++.+.|.++.+++.++.++|.+.| +.. .....+.++++.+...+.....|.++++.|..++.
T Consensus 25 ei~~if~~~s~~~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~ 91 (567)
T PLN02228 25 SIKRLFEAYSRNGKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLF 91 (567)
T ss_pred HHHHHHHHhcCCCccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHhc
Confidence 344555554555789999998877 221 23445677777554322111245688888888773
No 262
>cd00284 Cytochrome_b_N Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.
Probab=23.47 E-value=2.8e+02 Score=28.32 Aligned_cols=78 Identities=21% Similarity=0.338 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhccccccccCCchhhhhhhhcccCCCCCceeeeccccchhHHHHHHHHHHHHHHhhhhh
Q 042007 373 FHKLIALGIAIGSIVHTLFHLLCNYPKLSSCRPEKFMYLLGPALNYHQPTYYDLMIHTVGYTGVLMLVIMAISFTLATHS 452 (844)
Q Consensus 373 fHr~ig~~~~~~~~vH~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~tG~~~~v~l~i~~~~s~~~ 452 (844)
.|+|-|-.+++.+.+|..--+ .-..|...+..-| ++|+++++++....++.
T Consensus 74 ~H~~gas~~~~~~~lH~~r~~------------------~~gsY~~pre~~W--------~~G~~l~~l~~~~af~G--- 124 (200)
T cd00284 74 LHANGASMFFLMLYLHIFRGL------------------YYGSYKKPRELTW--------VIGVILLLLTMATAFMG--- 124 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHH------------------HHHHhcchhHHHH--------HHHHHHHHHHHHHHHcc---
Q ss_pred hhhccccccc--------------------------------------cccccccchhhHHHHHHHHHHHHH-HHHH
Q 042007 453 FRRNVIKLPW--------------------------------------IFHRFAGFNSFWYAHHLLVLAYVL-LFMH 490 (844)
Q Consensus 453 ~Rr~~~~~~~--------------------------------------~~~~~~~ye~F~~~H~l~~~~~v~-l~~H 490 (844)
+-||| .+.| |+..|.++..+.++ ..+|
T Consensus 125 -----Y~Lpw~q~s~w~~~v~~~i~~~iP~iG~~l~~~l~Gg~~v~~~TL~R------ff~lH~llP~~i~~l~~lH 190 (200)
T cd00284 125 -----YVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTR------FFALHFLLPFIIAVIVILH 190 (200)
T ss_pred -----cccCchhhhhHHHHHHHHHHHHccccCccceeeeccCCCCCCccccH------HHHHHHHHHHHHHHHHHHH
No 263
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=22.78 E-value=77 Score=35.42 Aligned_cols=24 Identities=29% Similarity=0.422 Sum_probs=21.5
Q ss_pred CeEEEEEcccc--hhchHHHHHHHHH
Q 042007 665 DILLLIGLGIG--ATPFISIIKDLLN 688 (844)
Q Consensus 665 ~~vvlVagGiG--ITp~lsil~~l~~ 688 (844)
+++++.|||+| |.|.+++++.+..
T Consensus 2 ~~i~~~~GGTGGHi~Pala~a~~l~~ 27 (352)
T PRK12446 2 KKIVFTGGGSAGHVTPNLAIIPYLKE 27 (352)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHHHHh
Confidence 46899999999 8999999999875
No 264
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=21.99 E-value=1.1e+02 Score=27.18 Aligned_cols=54 Identities=19% Similarity=0.227 Sum_probs=25.9
Q ss_pred CCCcccHHHHHHHHHhhhccccccccccchHHHHHHHHHHhCCCCCCceeHHHHHHHHHc
Q 042007 187 GDGILTEDEVREVIVLSASENKLSNLKENSSTYAALIMEKLDPDCKGYIEMWQLEILLRG 246 (844)
Q Consensus 187 ~dG~It~eEl~~il~~~~~~~~l~~~~~~~~e~~~~if~~~D~d~dG~It~~EF~~ll~~ 246 (844)
.||.++.+|...+-......-+++ ++..+.+++.+....+...++++|...+..
T Consensus 12 aDG~v~~~E~~~i~~~l~~~~~l~------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 65 (104)
T cd07313 12 ADGEYDEEERAAIDRLLAERFGLD------AEEAAELLAEAEALEEEAPDLYEFTSLIKE 65 (104)
T ss_pred HcCCCCHHHHHHHHHHHHHHhCcC------HHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 367777777766554322211222 222333444443333344566666666543
No 265
>PF13301 DUF4079: Protein of unknown function (DUF4079)
Probab=21.01 E-value=5.3e+02 Score=25.81 Aligned_cols=86 Identities=19% Similarity=0.137 Sum_probs=49.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhhccccccccCCchhhhhhhhcccCCCCCceeeeccccchhHHHHHHHHHHHHHHhhh
Q 042007 371 LNFHKLIALGIAIGSIVHTLFHLLCNYPKLSSCRPEKFMYLLGPALNYHQPTYYDLMIHTVGYTGVLMLVIMAISFTLAT 450 (844)
Q Consensus 371 ~~fHr~ig~~~~~~~~vH~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~tG~~~~v~l~i~~~~s~ 450 (844)
...|..+|.+++.+..+=.+.-...-+. + .++.| ..|- .++|+.++.+|++...++.
T Consensus 80 r~~H~~~g~~ll~~~~L~~lGG~~~~~~---~---------~~~lf--~spH---------~~~Gl~~~~L~~~s~al~~ 136 (175)
T PF13301_consen 80 RDRHYRLGFALLAFMGLGALGGQLGTYR---Q---------NGKLF--WSPH---------LWAGLAVVGLMAFSAALVP 136 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHcchHHHHH---c---------CCCCc--cCch---------HHHHHHHHHHHHHHHHHHH
Confidence 5789999988888777665543311110 0 00111 1232 3579888888776655444
Q ss_pred hhhhhccccccccccccccchhhHHHHHHHHH-HHHHHHHHhc
Q 042007 451 HSFRRNVIKLPWIFHRFAGFNSFWYAHHLLVL-AYVLLFMHGF 492 (844)
Q Consensus 451 ~~~Rr~~~~~~~~~~~~~~ye~F~~~H~l~~~-~~v~l~~H~~ 492 (844)
...+.+ -......|..+.. +++++.+|+.
T Consensus 137 ~i~~g~-------------~~~~R~lHi~lN~~~l~Lf~~q~i 166 (175)
T PF13301_consen 137 QIQKGN-------------RPWARRLHIYLNSLALLLFAWQAI 166 (175)
T ss_pred HHccCC-------------chhHHHHHHHHHHHHHHHHHHHHH
Confidence 444422 2357789998865 4556677875
No 266
>MTH00191 CYTB cytochrome b; Provisional
Probab=20.78 E-value=3.5e+02 Score=30.50 Aligned_cols=76 Identities=24% Similarity=0.326 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhccccccccCCchhhhhhhhcccCCCCCceeeeccccchhHHHHHHHHHHHHHHhhhhh
Q 042007 373 FHKLIALGIAIGSIVHTLFHLLCNYPKLSSCRPEKFMYLLGPALNYHQPTYYDLMIHTVGYTGVLMLVIMAISFTLATHS 452 (844)
Q Consensus 373 fHr~ig~~~~~~~~vH~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~tG~~~~v~l~i~~~~s~~~ 452 (844)
.|.|-|-++++.+.+|..--+. .+.| ..|.-| ++|+++++++....++.
T Consensus 79 ~H~~gas~~~~~~~~H~~r~~~----------~gsy----------~~~~~W--------~~G~~l~~l~~~~~f~G--- 127 (365)
T MTH00191 79 IHANGASFFFICIYLHIGRGLY----------YGSY----------LNKETW--------NVGVILLILSMATAFLG--- 127 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----------hhee----------ccchhh--------HhhHHHHHHHHHHHHhh---
Q ss_pred hhhccccccc--------------------------------------cccccccchhhHHHHHHHHHHHHH-HHHH
Q 042007 453 FRRNVIKLPW--------------------------------------IFHRFAGFNSFWYAHHLLVLAYVL-LFMH 490 (844)
Q Consensus 453 ~Rr~~~~~~~--------------------------------------~~~~~~~ye~F~~~H~l~~~~~v~-l~~H 490 (844)
+-||| .+.| |+..|.++..+.++ ..+|
T Consensus 128 -----y~Lpw~q~s~w~~~v~~~l~~~iP~vG~~l~~~~~Gg~~v~~~tl~R------ff~lH~~lP~~i~~l~~~H 193 (365)
T MTH00191 128 -----YVLPWGQMSFWGATVITNLLSAIPYIGDDLVQWLWGGFSVDNATLTR------FFTFHFLLPFLIAALSLIH 193 (365)
T ss_pred -----cccccccchHHHHHHHHhcccccccccHHHHHHhhccCCCCcchhhH------HHHHHHHHHHHHHHHHHHH
Done!