Query 042008
Match_columns 208
No_of_seqs 123 out of 844
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 13:03:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042008.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042008hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02314 pectinesterase 100.0 1.8E-32 3.8E-37 253.1 21.7 160 46-207 69-234 (586)
2 TIGR01614 PME_inhib pectineste 100.0 1E-31 2.2E-36 214.6 19.3 151 45-206 27-177 (178)
3 PLN02468 putative pectinestera 100.0 6.3E-32 1.4E-36 248.3 19.2 154 46-207 63-217 (565)
4 PLN02484 probable pectinestera 100.0 8.3E-32 1.8E-36 248.3 20.0 156 46-207 72-227 (587)
5 PLN02313 Pectinesterase/pectin 100.0 1.5E-31 3.2E-36 246.8 21.6 162 46-207 58-220 (587)
6 smart00856 PMEI Plant invertas 100.0 1.7E-31 3.7E-36 206.8 17.3 146 46-202 3-148 (148)
7 PLN02708 Probable pectinestera 100.0 1.7E-31 3.7E-36 244.9 20.1 153 45-206 42-195 (553)
8 PLN02217 probable pectinestera 100.0 1.2E-31 2.6E-36 248.7 19.1 158 45-207 51-208 (670)
9 PLN02990 Probable pectinestera 100.0 1.8E-31 3.9E-36 245.4 19.7 157 46-207 52-210 (572)
10 PLN02506 putative pectinestera 100.0 2.8E-31 6.1E-36 242.4 19.7 161 44-207 31-192 (537)
11 PLN02713 Probable pectinestera 100.0 6.9E-31 1.5E-35 241.3 20.1 153 49-205 34-188 (566)
12 PLN02416 probable pectinestera 100.0 1.7E-30 3.7E-35 237.6 19.2 157 44-207 35-192 (541)
13 PLN02745 Putative pectinestera 100.0 3.1E-30 6.7E-35 238.0 20.9 158 41-207 73-232 (596)
14 PLN02197 pectinesterase 100.0 2.2E-30 4.7E-35 238.2 18.8 154 45-207 36-191 (588)
15 PLN02995 Probable pectinestera 100.0 3.4E-30 7.4E-35 235.6 19.4 156 48-207 35-191 (539)
16 PLN02301 pectinesterase/pectin 100.0 4.7E-30 1E-34 234.6 19.1 151 46-207 49-201 (548)
17 PF04043 PMEI: Plant invertase 100.0 3.8E-29 8.2E-34 194.0 16.4 147 46-202 3-152 (152)
18 PLN02698 Probable pectinestera 100.0 5E-29 1.1E-33 226.2 18.0 154 45-207 20-177 (497)
19 PLN03043 Probable pectinestera 100.0 1.1E-28 2.4E-33 225.8 16.6 149 52-205 4-156 (538)
20 PLN02933 Probable pectinestera 99.9 3E-23 6.5E-28 188.8 18.1 127 75-207 48-182 (530)
21 PLN02201 probable pectinestera 99.9 7.3E-23 1.6E-27 186.3 16.2 125 79-206 38-163 (520)
22 PLN02170 probable pectinestera 99.9 4.7E-23 1E-27 187.1 14.5 181 1-207 1-185 (529)
23 PLN02488 probable pectinestera 99.9 3.8E-22 8.3E-27 179.9 14.5 151 51-207 2-160 (509)
24 PLN02916 pectinesterase family 99.7 1.7E-16 3.6E-21 143.9 11.4 85 109-207 57-141 (502)
25 PF13956 Ibs_toxin: Toxin Ibs, 71.5 1.7 3.6E-05 21.5 0.4 15 13-27 3-17 (19)
26 KOG1733 Mitochondrial import i 70.4 34 0.00073 24.4 6.9 51 86-136 28-85 (97)
27 PF07870 DUF1657: Protein of u 58.5 43 0.00093 20.9 6.7 43 89-132 5-47 (50)
28 PF02953 zf-Tim10_DDP: Tim10/D 44.9 65 0.0014 20.9 4.7 29 108-136 36-64 (66)
29 PF14290 DUF4370: Domain of un 44.4 1.8E+02 0.0039 24.0 8.7 81 114-196 130-212 (239)
30 KOG4514 Uncharacterized conser 40.2 1.9E+02 0.0041 23.5 7.3 58 75-137 121-179 (222)
31 PLN02749 Uncharacterized prote 27.9 3E+02 0.0065 21.6 9.1 81 114-196 64-146 (173)
32 PF02609 Exonuc_VII_S: Exonucl 27.7 1.6E+02 0.0034 18.3 4.5 44 124-173 1-44 (53)
33 PRK01614 tatE twin arginine tr 27.6 54 0.0012 23.0 2.1 18 6-23 2-19 (85)
34 PLN03207 stomagen; Provisional 25.4 96 0.0021 22.5 3.1 26 8-33 9-34 (113)
35 PF10311 Ilm1: Increased loss 23.4 97 0.0021 24.5 3.1 28 3-30 46-73 (165)
36 PF03487 IL13: Interleukin-13; 23.1 99 0.0021 18.6 2.3 18 156-175 3-20 (43)
37 KOG4841 Dolichol-phosphate man 22.2 86 0.0019 22.2 2.3 25 116-140 66-90 (95)
38 PF04108 APG17: Autophagy prot 21.0 6.2E+02 0.014 22.8 10.6 17 53-69 212-228 (412)
39 PF10360 DUF2433: Protein of u 21.0 1.4E+02 0.0031 22.8 3.5 17 191-207 48-64 (132)
40 PF05478 Prominin: Prominin; 20.6 8.4E+02 0.018 24.2 11.1 19 146-164 271-289 (806)
41 PF08287 DASH_Spc19: Spc19; I 20.4 4E+02 0.0086 20.7 6.0 24 117-140 2-25 (153)
42 TIGR01280 xseB exodeoxyribonuc 20.4 2.5E+02 0.0055 18.5 4.3 45 124-174 3-47 (67)
43 PF08525 OapA_N: Opacity-assoc 20.1 1.4E+02 0.0031 16.5 2.5 20 8-27 6-26 (30)
No 1
>PLN02314 pectinesterase
Probab=100.00 E-value=1.8e-32 Score=253.10 Aligned_cols=160 Identities=26% Similarity=0.458 Sum_probs=141.6
Q ss_pred hHHHHHcccCCCCChhhHHHhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhHHHHH
Q 042008 46 YKNFIKTSCNSTLYPALCYKYLSSHASTIKTDSVKLCNTALTVNLKAANKTSALVTSMAKKGGLRPAEKAVIEDCNEEID 125 (208)
Q Consensus 46 ~~~~I~~~C~~T~~p~lC~~sL~~~~~s~~~~~~~l~~~al~~a~~~a~~a~~~~~~l~~~~~~~~~~~~al~dC~ely~ 125 (208)
+...|+.+|+.|+||++|+++|+++|.+...+|++|++++++++++++.++...++++... ..+++.+.||+||+|+|+
T Consensus 69 ~~~~Iks~C~~T~YP~lC~sSLs~~p~s~~~~p~~L~~~al~vti~~a~~a~~~~~~L~~~-~~~~~~k~AL~DC~Elld 147 (586)
T PLN02314 69 PATSLKAVCSVTRYPESCISSISSLPTSNTTDPETLFKLSLKVAIDELSKLSDLPQKLINE-TNDERLKSALRVCETLFD 147 (586)
T ss_pred HHHHHHHhccCCCChHHHHHHHhcccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHHH
Confidence 5579999999999999999999999988788999999999999999999999999988754 578899999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhccc--hhhhHhHHHHHHHHhhcchhHhHHhhccCCc----chhhHHHHHHHHHHHHHHHHHH
Q 042008 126 DCVDELRKASNVLDNLRDALN--KEDQMADIKTWVSAAMTDEDTCMDEFEENNV----RESVKNKIKKSIVDLRKITSNS 199 (208)
Q Consensus 126 ~a~~~L~~a~~~l~~~~~~~~--~~~~~~d~~twLSAAlt~~~TC~Dgf~~~~~----~~~v~~~l~~~~~~~~~L~sna 199 (208)
+++++|++++.+|+..++ .. +.+.++|++||||||||||+||+|||++.+. .+.+++.|...+.++.||+||+
T Consensus 148 dAid~L~~Sl~~l~~~~~-~~~~~~~~~~Dv~TWLSAALT~q~TClDGF~e~~~~k~~~s~vk~~~~~~l~n~~eLtSNa 226 (586)
T PLN02314 148 DAIDRLNDSISSMQVGEG-EKILSSSKIDDLKTWLSATITDQETCIDALQELSQNKYANSTLTNEVKTAMSNSTEFTSNS 226 (586)
T ss_pred HHHHHHHHHHHHHhhccc-ccccccccHHHHHhHHHHHhcCHhHHHHhhhccccccccchhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999975332 11 2456899999999999999999999986643 3568889999999999999999
Q ss_pred HHHHHhhc
Q 042008 200 LALINRLS 207 (208)
Q Consensus 200 LAiv~~ls 207 (208)
|||++++.
T Consensus 227 LAIi~~l~ 234 (586)
T PLN02314 227 LAIVSKIL 234 (586)
T ss_pred HHHHhhhc
Confidence 99999865
No 2
>TIGR01614 PME_inhib pectinesterase inhibitor domain. This model describes a plant domain of about 200 amino acids, characterized by four conserved Cys residues, shown in a pectinesterase inhibitor from Kiwi to form two disulfide bonds: first to second and third to fourth. Roughly half the members of this family have the region described by this model followed immediately by a pectinesterase domain, pfam01095. This suggests that the pairing of the enzymatic domain and its inhibitor reflects a conserved regulatory mechanism for this enzyme family.
Probab=100.00 E-value=1e-31 Score=214.62 Aligned_cols=151 Identities=34% Similarity=0.526 Sum_probs=138.3
Q ss_pred hhHHHHHcccCCCCChhhHHHhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhHHHH
Q 042008 45 IYKNFIKTSCNSTLYPALCYKYLSSHASTIKTDSVKLCNTALTVNLKAANKTSALVTSMAKKGGLRPAEKAVIEDCNEEI 124 (208)
Q Consensus 45 ~~~~~I~~~C~~T~~p~lC~~sL~~~~~s~~~~~~~l~~~al~~a~~~a~~a~~~~~~l~~~~~~~~~~~~al~dC~ely 124 (208)
.....|+.+|++|+||++|+.+|.++|++...|+++|+.++++++..++..+..++.++.++. .++..+.++++|.++|
T Consensus 27 ~~~~~i~~~C~~t~~~~~C~~~L~~~~~~~~ad~~~la~~ai~~a~~~~~~~~~~i~~l~~~~-~~~~~~~al~~C~~~y 105 (178)
T TIGR01614 27 ATQSLIKRICKKTEYPNFCISTLKSDPSSAKADLQGLANISVSAALSNASDTLDHISKLLLTK-GDPRDKSALEDCVELY 105 (178)
T ss_pred chHHHHHHHHcCCCChHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-CCHHHHHHHHHHHHHH
Confidence 467899999999999999999999999887789999999999999999999999999987654 4788999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhccchhhhHhHHHHHHHHhhcchhHhHHhhccCCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 042008 125 DDCVDELRKASNVLDNLRDALNKEDQMADIKTWVSAAMTDEDTCMDEFEENNVRESVKNKIKKSIVDLRKITSNSLALIN 204 (208)
Q Consensus 125 ~~a~~~L~~a~~~l~~~~~~~~~~~~~~d~~twLSAAlt~~~TC~Dgf~~~~~~~~v~~~l~~~~~~~~~L~snaLAiv~ 204 (208)
++++++|++++++++.+ .++|+++|||+|+++++||+|||.+.+ +.++++|...+.++.+|++|+|+|++
T Consensus 106 ~~a~~~L~~a~~~l~~~--------~~~d~~~~ls~a~~~~~tC~d~f~~~~--~~~~~~l~~~~~~~~~l~s~alai~~ 175 (178)
T TIGR01614 106 SDAVDALDKALASLKSK--------DYSDAETWLSSALTDPSTCEDGFEELG--GIVKSPLTKRNNNVKKLSSITLAIIK 175 (178)
T ss_pred HHHHHHHHHHHHHHHhc--------chhHHHHHHHHHHcccchHHHHhccCC--CCccchHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999863 378999999999999999999999764 34678899999999999999999998
Q ss_pred hh
Q 042008 205 RL 206 (208)
Q Consensus 205 ~l 206 (208)
.+
T Consensus 176 ~~ 177 (178)
T TIGR01614 176 ML 177 (178)
T ss_pred hc
Confidence 75
No 3
>PLN02468 putative pectinesterase/pectinesterase inhibitor
Probab=100.00 E-value=6.3e-32 Score=248.33 Aligned_cols=154 Identities=25% Similarity=0.396 Sum_probs=136.4
Q ss_pred hHHHHHcccCCCCChhhHHHhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHhHHHH
Q 042008 46 YKNFIKTSCNSTLYPALCYKYLSSHASTIKTDSVKLCNTALTVNLKAANKTSALVTSMAKKG-GLRPAEKAVIEDCNEEI 124 (208)
Q Consensus 46 ~~~~I~~~C~~T~~p~lC~~sL~~~~~s~~~~~~~l~~~al~~a~~~a~~a~~~~~~l~~~~-~~~~~~~~al~dC~ely 124 (208)
....|+.+|+.|+||++|+++|.++|.+...+|++|++++++++++++.++...+.++.... ..+++.+.||+||+|+|
T Consensus 63 ~~~~Ik~~C~~T~Yp~lC~sSLs~~~~s~~~~p~~L~~~al~vti~~~~~a~~~~s~l~~~~~~~d~~~k~AL~DC~ELl 142 (565)
T PLN02468 63 ISTSVKAVCDVTLYKDSCYETLAPAPKASQLQPEELFKYAVKVAINELSKASQAFSNSEGFLGVKDNMTNAALNACQELL 142 (565)
T ss_pred hhHHHHHhccCCCChHHHHHHHhhcCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHH
Confidence 44699999999999999999999999877789999999999999999999998887776432 46889999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhccchhhhHhHHHHHHHHhhcchhHhHHhhccCCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 042008 125 DDCVDELRKASNVLDNLRDALNKEDQMADIKTWVSAAMTDEDTCMDEFEENNVRESVKNKIKKSIVDLRKITSNSLALIN 204 (208)
Q Consensus 125 ~~a~~~L~~a~~~l~~~~~~~~~~~~~~d~~twLSAAlt~~~TC~Dgf~~~~~~~~v~~~l~~~~~~~~~L~snaLAiv~ 204 (208)
++++++|++++.++.... . .+.++|++||||||||||+||+|||++. ++++.|.+.+.++.||+||+|||++
T Consensus 143 ddaid~L~~Sl~~l~~~~---~-~~~~dDl~TWLSAAlTnq~TClDGF~e~----~vk~~~~~~l~n~~eLtSNaLAIi~ 214 (565)
T PLN02468 143 DLAIDNLNNSLTSSGGVS---V-LDNVDDLRTWLSSAGTYQETCIDGLAEP----NLKSFGENHLKNSTELTSNSLAIIT 214 (565)
T ss_pred HHHHHHHHHHHHHHhccc---c-ccchHHHHHHHHHHhcchhhhhhhhccc----CchHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999987421 1 3467999999999999999999999864 4688899999999999999999999
Q ss_pred hhc
Q 042008 205 RLS 207 (208)
Q Consensus 205 ~ls 207 (208)
.++
T Consensus 215 ~l~ 217 (565)
T PLN02468 215 WIG 217 (565)
T ss_pred ccc
Confidence 864
No 4
>PLN02484 probable pectinesterase/pectinesterase inhibitor
Probab=100.00 E-value=8.3e-32 Score=248.25 Aligned_cols=156 Identities=26% Similarity=0.462 Sum_probs=136.7
Q ss_pred hHHHHHcccCCCCChhhHHHhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhHHHHH
Q 042008 46 YKNFIKTSCNSTLYPALCYKYLSSHASTIKTDSVKLCNTALTVNLKAANKTSALVTSMAKKGGLRPAEKAVIEDCNEEID 125 (208)
Q Consensus 46 ~~~~I~~~C~~T~~p~lC~~sL~~~~~s~~~~~~~l~~~al~~a~~~a~~a~~~~~~l~~~~~~~~~~~~al~dC~ely~ 125 (208)
+...|+.+|+.|.||++|+++|.++|.+...+|++|+++++++++.++.++......+.. ...+++.+.||+||+|+|+
T Consensus 72 ~~~~Iks~C~~T~YP~lC~sSLs~~p~s~~~~p~~L~~~slnvtl~~~~~a~~~s~~l~~-~~~~~r~k~AL~DClELld 150 (587)
T PLN02484 72 PTQAISKTCSKTRFPNLCVDSLLDFPGSLTASESDLIHISFNMTLQHFSKALYLSSTISY-VQMPPRVRSAYDSCLELLD 150 (587)
T ss_pred hhHHHHHhccCCCChHHHHHHHhhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhh-ccCCHHHHHHHHHHHHHHH
Confidence 456999999999999999999999998777899999999999999999998766554443 4578899999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhccchhhhHhHHHHHHHHhhcchhHhHHhhccCCcchhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 042008 126 DCVDELRKASNVLDNLRDALNKEDQMADIKTWVSAAMTDEDTCMDEFEENNVRESVKNKIKKSIVDLRKITSNSLALINR 205 (208)
Q Consensus 126 ~a~~~L~~a~~~l~~~~~~~~~~~~~~d~~twLSAAlt~~~TC~Dgf~~~~~~~~v~~~l~~~~~~~~~L~snaLAiv~~ 205 (208)
+++++|++++.+|.... . ...++|++|||||||||++||+|||++.+ .++++++|.+.+.++.+|+||+|||++.
T Consensus 151 dAid~L~~Sl~~l~~~~---~-~~~~~DvkTWLSAALTnq~TClDGF~e~~-~~~vk~~m~~~l~~l~~LtSNALAIi~~ 225 (587)
T PLN02484 151 DSVDALSRALSSVVPSS---G-GGSPQDVVTWLSAALTNHDTCTEGFDGVN-GGEVKDQMTGALKDLSELVSNCLAIFSA 225 (587)
T ss_pred HHHHHHHHHHHHHhccc---c-ccchHHHHhHHHHHhccHhhHHHHhhccc-ccchHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999998532 1 33579999999999999999999998653 2468999999999999999999999988
Q ss_pred hc
Q 042008 206 LS 207 (208)
Q Consensus 206 ls 207 (208)
++
T Consensus 226 ~~ 227 (587)
T PLN02484 226 SN 227 (587)
T ss_pred cc
Confidence 64
No 5
>PLN02313 Pectinesterase/pectinesterase inhibitor
Probab=100.00 E-value=1.5e-31 Score=246.82 Aligned_cols=162 Identities=29% Similarity=0.515 Sum_probs=140.8
Q ss_pred hHHHHHcccCCCCChhhHHHhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHhHHHH
Q 042008 46 YKNFIKTSCNSTLYPALCYKYLSSHASTIKTDSVKLCNTALTVNLKAANKTSALVTSMAKKG-GLRPAEKAVIEDCNEEI 124 (208)
Q Consensus 46 ~~~~I~~~C~~T~~p~lC~~sL~~~~~s~~~~~~~l~~~al~~a~~~a~~a~~~~~~l~~~~-~~~~~~~~al~dC~ely 124 (208)
....|+.+|+.|+||++|+++|++++.+...+|++|++++|+++++++.++...++++.... +.+++.+.||+||+|+|
T Consensus 58 ~~~~Iks~C~~T~YP~~C~ssLs~~~~~~~~~~~~Li~~sL~vtl~~a~~a~~~vs~L~~~~~~l~~r~k~AL~DClELl 137 (587)
T PLN02313 58 SHAVLKSVCSSTLYPELCFSAVAATGGKELTSQKEVIEASLNLTTKAVKHNYFAVKKLIAKRKGLTPREVTALHDCLETI 137 (587)
T ss_pred HhHHHHHhccCCCChHHHHHHHhccCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHH
Confidence 45699999999999999999999988776779999999999999999999999999887533 57889999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhccchhhhHhHHHHHHHHhhcchhHhHHhhccCCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 042008 125 DDCVDELRKASNVLDNLRDALNKEDQMADIKTWVSAAMTDEDTCMDEFEENNVRESVKNKIKKSIVDLRKITSNSLALIN 204 (208)
Q Consensus 125 ~~a~~~L~~a~~~l~~~~~~~~~~~~~~d~~twLSAAlt~~~TC~Dgf~~~~~~~~v~~~l~~~~~~~~~L~snaLAiv~ 204 (208)
++++|+|.+++.++........+...++|++||||||||||+||+|||++.+.++.+++.|...+.++.+|+||+|||++
T Consensus 138 ddavD~L~~Sl~~l~~~~~~~~~~~~~dDlqTWLSAALTnq~TClDGF~~~~~~~~vk~~m~~~l~n~teLtSNALAIv~ 217 (587)
T PLN02313 138 DETLDELHVAVEDLHQYPKQKSLRKHADDLKTLISSAITNQGTCLDGFSYDDADRKVRKALLKGQVHVEHMCSNALAMIK 217 (587)
T ss_pred HHHHHHHHHHHHHHhhcccccccccchhHHHHHHHHHhcchhhHHHhhhccCccchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999853210122345799999999999999999999986544457899999999999999999999998
Q ss_pred hhc
Q 042008 205 RLS 207 (208)
Q Consensus 205 ~ls 207 (208)
+++
T Consensus 218 ~~~ 220 (587)
T PLN02313 218 NMT 220 (587)
T ss_pred ccc
Confidence 864
No 6
>smart00856 PMEI Plant invertase/pectin methylesterase inhibitor. This domain inhibits pectin methylesterases (PMEs) and invertases through formation of a non-covalent 1:1 complex PUBMED:8521860. It has been implicated in the regulation of fruit development, carbohydrate metabolism and cell wall extension. It may also be involved in inhibiting microbial pathogen PMEs. It has been observed that it is often expressed as a large inactive preprotein PUBMED:8521860. It is also found at the N-termini of PMEs predicted from DNA sequences, suggesting that both PMEs and their inhibitors are expressed as a single polyprotein and subsequently processed. It has two disulphide bridges and is mainly alpha-helical PUBMED:10880981.
Probab=100.00 E-value=1.7e-31 Score=206.82 Aligned_cols=146 Identities=43% Similarity=0.649 Sum_probs=134.9
Q ss_pred hHHHHHcccCCCCChhhHHHhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhHHHHH
Q 042008 46 YKNFIKTSCNSTLYPALCYKYLSSHASTIKTDSVKLCNTALTVNLKAANKTSALVTSMAKKGGLRPAEKAVIEDCNEEID 125 (208)
Q Consensus 46 ~~~~I~~~C~~T~~p~lC~~sL~~~~~s~~~~~~~l~~~al~~a~~~a~~a~~~~~~l~~~~~~~~~~~~al~dC~ely~ 125 (208)
....|+.+|++|+||++|+.+|.++|.+...|+++|++++++.++.++..+..++.++.+. +.++..+.++++|.++|+
T Consensus 3 ~~~~i~~~C~~T~~~~~C~~~L~~~~~~~~~d~~~l~~~ai~~~~~~a~~~~~~~~~l~~~-~~~~~~~~al~~C~~~y~ 81 (148)
T smart00856 3 TSKLIDSICKSTDYPDFCVSSLSSDPSSSATDPKDLAKIAIKVALSQATKTLSFISSLLKK-TKDPRLKAALKDCLELYD 81 (148)
T ss_pred HHHHHHHHhcCCCChHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999988889999999999999999999999999998764 578899999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhccchhhhHhHHHHHHHHhhcchhHhHHhhccCCcchhhHHHHHHHHHHHHHHHHHHHHH
Q 042008 126 DCVDELRKASNVLDNLRDALNKEDQMADIKTWVSAAMTDEDTCMDEFEENNVRESVKNKIKKSIVDLRKITSNSLAL 202 (208)
Q Consensus 126 ~a~~~L~~a~~~l~~~~~~~~~~~~~~d~~twLSAAlt~~~TC~Dgf~~~~~~~~v~~~l~~~~~~~~~L~snaLAi 202 (208)
+++++|++++.++..+ .++|+++|||+|+++++||+|||.+.+ +.++++|...+.++.+|++|+|+|
T Consensus 82 ~a~~~L~~a~~~l~~~--------~~~d~~~~lsaa~t~~~tC~d~f~~~~--~~~~~~l~~~~~~~~~l~s~aLai 148 (148)
T smart00856 82 DAVDSLEKALEELKSG--------DYDDVATWLSAALTDQDTCLDGFEEND--DKVKSPLTKRNDNLEKLTSNALAI 148 (148)
T ss_pred HHHHHHHHHHHHHHhc--------chhHHHHHHHHHhcCcchHHhHhccCC--cchhHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999863 378999999999999999999998753 467899999999999999999986
No 7
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=99.98 E-value=1.7e-31 Score=244.91 Aligned_cols=153 Identities=18% Similarity=0.327 Sum_probs=130.2
Q ss_pred hhHHHHHcccCCCCChhhHHHhhhccCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhHHH
Q 042008 45 IYKNFIKTSCNSTLYPALCYKYLSSHAS-TIKTDSVKLCNTALTVNLKAANKTSALVTSMAKKGGLRPAEKAVIEDCNEE 123 (208)
Q Consensus 45 ~~~~~I~~~C~~T~~p~lC~~sL~~~~~-s~~~~~~~l~~~al~~a~~~a~~a~~~~~~l~~~~~~~~~~~~al~dC~el 123 (208)
.....|+.+|+.|+||++|+++|++++. ....++.++++++|+++++++.++...+..+......+.....|++||+|+
T Consensus 42 ~~~~~I~s~C~~T~YP~lC~sSLs~~~~~~~~~~p~~Li~aAL~vsl~~a~~a~~~v~~L~~~~~~~~~~~~AL~DC~EL 121 (553)
T PLN02708 42 STPPQILLACNATRFPDTCVSSLSNAGRVPPDPKPIQIIQSAISVSRENLKTAQSMVKSILDSSAGNVNRTTAATNCLEV 121 (553)
T ss_pred CccHHHHHhccCCCCcHHHHHHHhhccCCccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 5678999999999999999999999884 345689999999999999999999999998876432233335899999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhccchhhhHhHHHHHHHHhhcchhHhHHhhccCCcchhhHHHHHHHHHHHHHHHHHHHHHH
Q 042008 124 IDDCVDELRKASNVLDNLRDALNKEDQMADIKTWVSAAMTDEDTCMDEFEENNVRESVKNKIKKSIVDLRKITSNSLALI 203 (208)
Q Consensus 124 y~~a~~~L~~a~~~l~~~~~~~~~~~~~~d~~twLSAAlt~~~TC~Dgf~~~~~~~~v~~~l~~~~~~~~~L~snaLAiv 203 (208)
|++++++|++++.++... .++|++||||||||||+||+|||.+.+..+.+++.| ..+.++.+|+||+|||+
T Consensus 122 lddavd~L~~Sl~~L~~~--------~~~DvqTWLSAALTnq~TClDGF~~~~~~~~v~~~~-~~L~nvs~LtSNSLAmv 192 (553)
T PLN02708 122 LSNSEHRISSTDIALPRG--------KIKDARAWMSAALLYQYDCWSALKYVNDTSQVNDTM-SFLDSLIGLTSNALSMM 192 (553)
T ss_pred HHHHHHHHHHHHHHhhhc--------chHHHHHHHHHHhccHhHHHHHhhccCccchHHHHH-HHHHHHHHHHHHHHHhh
Confidence 999999999999888641 479999999999999999999998654223566666 67899999999999999
Q ss_pred Hhh
Q 042008 204 NRL 206 (208)
Q Consensus 204 ~~l 206 (208)
+++
T Consensus 193 ~~~ 195 (553)
T PLN02708 193 ASY 195 (553)
T ss_pred hcc
Confidence 974
No 8
>PLN02217 probable pectinesterase/pectinesterase inhibitor
Probab=99.98 E-value=1.2e-31 Score=248.72 Aligned_cols=158 Identities=25% Similarity=0.447 Sum_probs=137.6
Q ss_pred hhHHHHHcccCCCCChhhHHHhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhHHHH
Q 042008 45 IYKNFIKTSCNSTLYPALCYKYLSSHASTIKTDSVKLCNTALTVNLKAANKTSALVTSMAKKGGLRPAEKAVIEDCNEEI 124 (208)
Q Consensus 45 ~~~~~I~~~C~~T~~p~lC~~sL~~~~~s~~~~~~~l~~~al~~a~~~a~~a~~~~~~l~~~~~~~~~~~~al~dC~ely 124 (208)
...+.|+.+|+.|+||++|+++|..++ ....+|++|++++|+++++++.++...+.++... ..+++++.|++||+|+|
T Consensus 51 ~~~~~Ikt~C~sT~YP~lC~sSLs~~~-~~~~~p~dLi~aaL~vTl~a~~~a~~~~s~L~~~-~~~~r~k~AL~DClELl 128 (670)
T PLN02217 51 TSVKAIKDVCAPTDYKETCEDTLRKDA-KNTSDPLELVKTAFNATMKQISDVAKKSQTMIEL-QKDPRTKMALDQCKELM 128 (670)
T ss_pred hHHHHHHHHhcCCCCcHHHHHHhhhhc-ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCChHHHHHHHHHHHHH
Confidence 445699999999999999999999988 4567999999999999999999999888887442 46788999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhccchhhhHhHHHHHHHHhhcchhHhHHhhccCCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 042008 125 DDCVDELRKASNVLDNLRDALNKEDQMADIKTWVSAAMTDEDTCMDEFEENNVRESVKNKIKKSIVDLRKITSNSLALIN 204 (208)
Q Consensus 125 ~~a~~~L~~a~~~l~~~~~~~~~~~~~~d~~twLSAAlt~~~TC~Dgf~~~~~~~~v~~~l~~~~~~~~~L~snaLAiv~ 204 (208)
++++|+|.+++.+++..+. ..+....+|++||||||||||+||+|||++.+ +.+++.|.+.+.++.+|+||+|||++
T Consensus 129 ddAvDeL~~Sl~~L~~~~~-~~~~~~~dDvqTWLSAALTnQdTClDGF~~~~--~~vk~~m~~~l~nvseLtSNALAmv~ 205 (670)
T PLN02217 129 DYAIGELSKSFEELGKFEF-HKVDEALIKLRIWLSATISHEQTCLDGFQGTQ--GNAGETIKKALKTAVQLTHNGLAMVS 205 (670)
T ss_pred HHHHHHHHHHHHHHhhccc-cccccchhHHHHHHHHHHhchhHHHHhhhhhc--hHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999974322 22334579999999999999999999998653 57889999999999999999999999
Q ss_pred hhc
Q 042008 205 RLS 207 (208)
Q Consensus 205 ~ls 207 (208)
+++
T Consensus 206 ~ls 208 (670)
T PLN02217 206 EMS 208 (670)
T ss_pred hcc
Confidence 864
No 9
>PLN02990 Probable pectinesterase/pectinesterase inhibitor
Probab=99.98 E-value=1.8e-31 Score=245.36 Aligned_cols=157 Identities=25% Similarity=0.460 Sum_probs=136.4
Q ss_pred hHHHHHcccCCCCChhhHHHhhhc-cCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCHHHHHHHHHhHHH
Q 042008 46 YKNFIKTSCNSTLYPALCYKYLSS-HASTIKTDSVKLCNTALTVNLKAANKTSALVTSMAKK-GGLRPAEKAVIEDCNEE 123 (208)
Q Consensus 46 ~~~~I~~~C~~T~~p~lC~~sL~~-~~~s~~~~~~~l~~~al~~a~~~a~~a~~~~~~l~~~-~~~~~~~~~al~dC~el 123 (208)
....|+.+|+.|+||++|+++|.+ .+. ..+|++|+++++++++++++++...+.++... .+.+++.+.|++||+|+
T Consensus 52 ~~~~Ik~~C~~T~YP~lC~ssLs~a~~~--~~~p~~Li~aal~vtl~~~~~a~~~~~~l~~~~~~~~~r~k~Al~DC~EL 129 (572)
T PLN02990 52 TTKAVEAVCAPTDYKETCVNSLMKASPD--STQPLDLIKLGFNVTIRSINDSIKKASGELKAKAANDPETKGALELCEKL 129 (572)
T ss_pred hhHHHHHhhcCCCCcHHHHHHhhhcccc--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHH
Confidence 345999999999999999999998 443 46899999999999999999999888777643 35789999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhccchhhhHhHHHHHHHHhhcchhHhHHhhccCCcchhhHHHHHHHHHHHHHHHHHHHHHH
Q 042008 124 IDDCVDELRKASNVLDNLRDALNKEDQMADIKTWVSAAMTDEDTCMDEFEENNVRESVKNKIKKSIVDLRKITSNSLALI 203 (208)
Q Consensus 124 y~~a~~~L~~a~~~l~~~~~~~~~~~~~~d~~twLSAAlt~~~TC~Dgf~~~~~~~~v~~~l~~~~~~~~~L~snaLAiv 203 (208)
|++++++|++++.+|+..+. ..+...++|++||||||||||+||+|||++.+ +++++.|.+.+.++.+|+||+|||+
T Consensus 130 lddAvdeL~~Sl~~l~~~~~-~~~~~~~~DvqTWLSAALTnq~TClDGF~e~~--s~lk~~~~~~l~nv~~LtSNALAiv 206 (572)
T PLN02990 130 MNDATDDLKKCLDNFDGFSI-DQIEDFVEDLRVWLSGSIAYQQTCMDTFEEIK--SNLSQDMLKIFKTSRELTSNGLAMI 206 (572)
T ss_pred HHHHHHHHHHHHHHHhhccc-ccccchhHHHHHHHHHHhccHhhHHHhhhccc--hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999985332 23344679999999999999999999998654 4789999999999999999999999
Q ss_pred Hhhc
Q 042008 204 NRLS 207 (208)
Q Consensus 204 ~~ls 207 (208)
++++
T Consensus 207 ~~~~ 210 (572)
T PLN02990 207 TNIS 210 (572)
T ss_pred hhhh
Confidence 9865
No 10
>PLN02506 putative pectinesterase/pectinesterase inhibitor
Probab=99.98 E-value=2.8e-31 Score=242.37 Aligned_cols=161 Identities=24% Similarity=0.405 Sum_probs=137.0
Q ss_pred hhhHHHHHcccCCCCChhhHHHhhhccCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhHH
Q 042008 44 KIYKNFIKTSCNSTLYPALCYKYLSSHAST-IKTDSVKLCNTALTVNLKAANKTSALVTSMAKKGGLRPAEKAVIEDCNE 122 (208)
Q Consensus 44 ~~~~~~I~~~C~~T~~p~lC~~sL~~~~~s-~~~~~~~l~~~al~~a~~~a~~a~~~~~~l~~~~~~~~~~~~al~dC~e 122 (208)
+.....|+.+|+.|+||++|+++|+++... ...+|++|++++|+++++++.++...+.++... ..+++.+.|++||+|
T Consensus 31 ~~~~~~I~s~C~~T~YP~~C~ssLs~~~~~~~~~~p~~L~~aAL~vtl~~a~~a~~~v~~l~~~-~~~~r~~~Al~DC~E 109 (537)
T PLN02506 31 LNFQALIAQACQFVENHSSCVSNIQAELKKSGPRTPHSVLSAALKATLDEARLAIDMITKFNAL-SISYREQVAIEDCKE 109 (537)
T ss_pred hhHHHHHHHHccCCCCcHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cCChHHHHHHHHHHH
Confidence 456679999999999999999999986433 457899999999999999999999999888543 467889999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhhccchhhhHhHHHHHHHHhhcchhHhHHhhccCCcchhhHHHHHHHHHHHHHHHHHHHHH
Q 042008 123 EIDDCVDELRKASNVLDNLRDALNKEDQMADIKTWVSAAMTDEDTCMDEFEENNVRESVKNKIKKSIVDLRKITSNSLAL 202 (208)
Q Consensus 123 ly~~a~~~L~~a~~~l~~~~~~~~~~~~~~d~~twLSAAlt~~~TC~Dgf~~~~~~~~v~~~l~~~~~~~~~L~snaLAi 202 (208)
+|++++++|.+++.+++....+.......+|++|||||||||++||+|||++.+ +.+++.|...+.++.+|+||+|||
T Consensus 110 llddSvd~L~~Sl~el~~~~~~~~~~~~~~Dv~TWLSAALT~q~TC~DGF~~~~--~~~k~~v~~~l~nv~~LtSNALAi 187 (537)
T PLN02506 110 LLDFSVSELAWSLLEMNKIRAGHDNVAYEGNLKAWLSAALSNQDTCLEGFEGTD--RHLENFIKGSLKQVTQLISNVLAM 187 (537)
T ss_pred HHHHHHHHHHHHHHHHhhcccccccccchhhHHhHHHHHhccHhHHHHhhhhcc--hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999864321011112358999999999999999999998754 568888999999999999999999
Q ss_pred HHhhc
Q 042008 203 INRLS 207 (208)
Q Consensus 203 v~~ls 207 (208)
+++++
T Consensus 188 v~~l~ 192 (537)
T PLN02506 188 YTQLH 192 (537)
T ss_pred Hhhcc
Confidence 99875
No 11
>PLN02713 Probable pectinesterase/pectinesterase inhibitor
Probab=99.97 E-value=6.9e-31 Score=241.31 Aligned_cols=153 Identities=24% Similarity=0.317 Sum_probs=132.9
Q ss_pred HHHcccCCCCChhhHHHhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCHHHHHHHHHhHHHHHH
Q 042008 49 FIKTSCNSTLYPALCYKYLSSHASTIKTDSVKLCNTALTVNLKAANKTSALVTSMAKKGG--LRPAEKAVIEDCNEEIDD 126 (208)
Q Consensus 49 ~I~~~C~~T~~p~lC~~sL~~~~~s~~~~~~~l~~~al~~a~~~a~~a~~~~~~l~~~~~--~~~~~~~al~dC~ely~~ 126 (208)
.+..+|+.|+||++|+++|+.. ...+++++++++|++++.++..+...+.++....+ .+++.+.|++||+|+|++
T Consensus 34 ~~~s~C~~T~YP~~C~ssLs~s---~~~d~~~l~~aaL~~tl~~a~~a~~~vs~L~~~~~~~~~~r~k~AL~DC~ELldd 110 (566)
T PLN02713 34 SPSTICNTTPDPSFCKSVLPHN---QPGNVYDYGRFSVRKSLSQSRKFLSLVDRYLKRNSTLLSKSAIRALEDCQFLAGL 110 (566)
T ss_pred CCccccCCCCChHHHHHHhccc---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHH
Confidence 3566899999999999999862 24689999999999999999999999998876543 488999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhccchhhhHhHHHHHHHHhhcchhHhHHhhccCCcchhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 042008 127 CVDELRKASNVLDNLRDALNKEDQMADIKTWVSAAMTDEDTCMDEFEENNVRESVKNKIKKSIVDLRKITSNSLALINR 205 (208)
Q Consensus 127 a~~~L~~a~~~l~~~~~~~~~~~~~~d~~twLSAAlt~~~TC~Dgf~~~~~~~~v~~~l~~~~~~~~~L~snaLAiv~~ 205 (208)
++|+|.+++.+++..+. ..+.+.++|++||||||||||+||+|||.+.+..+.+++.|...+.++.+|+||+|||++.
T Consensus 111 avD~L~~Sl~~l~~~~~-~~~~~~~~DvqTWLSAALTnq~TClDGF~~~~~~~~~k~~v~~~l~nvt~LtSNaLAlv~~ 188 (566)
T PLN02713 111 NIDFLLSSFETVNSSSK-TLSDPQADDVQTLLSAILTNQQTCLDGLQAASSAWSVRNGLAVPLSNDTKLYSVSLALFTK 188 (566)
T ss_pred HHHHHHHHHHHHhhccc-cccccchhhHHHHHHHhhcchhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999985321 1234578999999999999999999999987655678888999999999999999999986
No 12
>PLN02416 probable pectinesterase/pectinesterase inhibitor
Probab=99.97 E-value=1.7e-30 Score=237.63 Aligned_cols=157 Identities=22% Similarity=0.395 Sum_probs=134.1
Q ss_pred hhhHHHHHcccCCCCChhhHHHhhhccCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhHH
Q 042008 44 KIYKNFIKTSCNSTLYPALCYKYLSSHASTI-KTDSVKLCNTALTVNLKAANKTSALVTSMAKKGGLRPAEKAVIEDCNE 122 (208)
Q Consensus 44 ~~~~~~I~~~C~~T~~p~lC~~sL~~~~~s~-~~~~~~l~~~al~~a~~~a~~a~~~~~~l~~~~~~~~~~~~al~dC~e 122 (208)
++..+.|+++|+.|+||++|+++|++++... ..++.+++.++++.++.++..+...+..+......+++.+.|++||.|
T Consensus 35 ~~~~~~Iks~C~~T~YP~lC~~sLss~~~~~~s~~~~~ll~~sL~~A~~~~~~~s~l~s~~~~~~~~~~~~k~AL~DC~E 114 (541)
T PLN02416 35 DPHLSSLTSFCKSTPYPDACFDSLKLSISINISPNILNFLLQTLQTAISEAGKLTNLLSGAGQSSNIIEKQRGTIQDCKE 114 (541)
T ss_pred chHHHHHHHhcCCCCChHHHHHHHhhcccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCHHHHHHHHHHHH
Confidence 4567799999999999999999999987532 456778999999999999988887776654333457888999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhhccchhhhHhHHHHHHHHhhcchhHhHHhhccCCcchhhHHHHHHHHHHHHHHHHHHHHH
Q 042008 123 EIDDCVDELRKASNVLDNLRDALNKEDQMADIKTWVSAAMTDEDTCMDEFEENNVRESVKNKIKKSIVDLRKITSNSLAL 202 (208)
Q Consensus 123 ly~~a~~~L~~a~~~l~~~~~~~~~~~~~~d~~twLSAAlt~~~TC~Dgf~~~~~~~~v~~~l~~~~~~~~~L~snaLAi 202 (208)
+|++++|+|++++.+|+..+ . +.++|++|||||||||++||+|||++.+ +.+++.|...+.++.||+||+|||
T Consensus 115 l~~dAvD~L~~Sl~~L~~~~---~--~~~~DvqTWLSAALT~q~TC~DGF~~~~--~~~~~~i~~~~~~v~qltSNALAl 187 (541)
T PLN02416 115 LHQITVSSLKRSVSRIQAGD---S--RKLADARAYLSAALTNKNTCLEGLDSAS--GPLKPKLVNSFTSTYKHVSNSLSM 187 (541)
T ss_pred HHHHHHHHHHHHHHHHhhcc---c--cchhhHHHHHHHHhcchhhHHhhhhhcC--cchhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999997532 1 3679999999999999999999998754 467889999999999999999999
Q ss_pred HHhhc
Q 042008 203 INRLS 207 (208)
Q Consensus 203 v~~ls 207 (208)
++.++
T Consensus 188 v~~~~ 192 (541)
T PLN02416 188 LPKSR 192 (541)
T ss_pred hcccc
Confidence 98764
No 13
>PLN02745 Putative pectinesterase/pectinesterase inhibitor
Probab=99.97 E-value=3.1e-30 Score=237.98 Aligned_cols=158 Identities=27% Similarity=0.468 Sum_probs=137.5
Q ss_pred CcchhhHHHHHcccCCCCChhhHHHhhhccCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 042008 41 NSLKIYKNFIKTSCNSTLYPALCYKYLSSHAS--TIKTDSVKLCNTALTVNLKAANKTSALVTSMAKKGGLRPAEKAVIE 118 (208)
Q Consensus 41 ~~~~~~~~~I~~~C~~T~~p~lC~~sL~~~~~--s~~~~~~~l~~~al~~a~~~a~~a~~~~~~l~~~~~~~~~~~~al~ 118 (208)
.+.....+.|+.+|+.|+||++|+++|.++.. +...+|++|++++|+++++++..+...+.++. ..+++.+.|++
T Consensus 73 ~~~~~~~~~Ik~~C~~T~YP~~C~sSLs~~~~~~~~~~~p~~Ll~aAL~vtl~~~~~a~~~~~~l~---~~~~r~k~Al~ 149 (596)
T PLN02745 73 SPVSQVDKIIQTVCNATLYKQTCENTLKKGTEKDPSLAQPKDLLKSAIKAVNDDLDKVLKKVLSFK---FENPDEKDAIE 149 (596)
T ss_pred CCCchHHHHHHHhcCCCCChHHHHHHHHhhcccccccCCHHHHHHHHHHHHHHHHHHHHHHHHhhc---cCCHHHHHHHH
Confidence 44456778999999999999999999998653 34578999999999999999999988887763 36889999999
Q ss_pred HhHHHHHHHHHHHHHHHHHhhhhhhccchhhhHhHHHHHHHHhhcchhHhHHhhccCCcchhhHHHHHHHHHHHHHHHHH
Q 042008 119 DCNEEIDDCVDELRKASNVLDNLRDALNKEDQMADIKTWVSAAMTDEDTCMDEFEENNVRESVKNKIKKSIVDLRKITSN 198 (208)
Q Consensus 119 dC~ely~~a~~~L~~a~~~l~~~~~~~~~~~~~~d~~twLSAAlt~~~TC~Dgf~~~~~~~~v~~~l~~~~~~~~~L~sn 198 (208)
||+|+|++++++|++++.++.. +. ..+.+.++|++|||||||||++||+|||++. .+++.|...+.++.+|+||
T Consensus 150 DC~ELlddAid~L~~Sl~~l~~-~~-~~~~~~~~Dv~TWLSAALT~q~TClDGF~e~----~l~s~m~~~l~~~~eLtSN 223 (596)
T PLN02745 150 DCKLLVEDAKEELKASISRIND-EV-NKLAKNVPDLNNWLSAVMSYQETCIDGFPEG----KLKSEMEKTFKSSQELTSN 223 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh-cc-cccccchHHHHHHHHHHhccHhHHHhhhccc----chHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999975 22 2344578999999999999999999999863 5788999999999999999
Q ss_pred HHHHHHhhc
Q 042008 199 SLALINRLS 207 (208)
Q Consensus 199 aLAiv~~ls 207 (208)
+|||++.++
T Consensus 224 ALAiv~~ls 232 (596)
T PLN02745 224 SLAMVSSLT 232 (596)
T ss_pred HHHHHhhhh
Confidence 999999875
No 14
>PLN02197 pectinesterase
Probab=99.97 E-value=2.2e-30 Score=238.20 Aligned_cols=154 Identities=19% Similarity=0.349 Sum_probs=132.7
Q ss_pred hhHHHHHcccCCCCChhhHHHhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcCCCCHHHHHHHHHhHH
Q 042008 45 IYKNFIKTSCNSTLYPALCYKYLSSHASTIKTDSVKLCNTALTVNLKAANKTSALVTSMA--KKGGLRPAEKAVIEDCNE 122 (208)
Q Consensus 45 ~~~~~I~~~C~~T~~p~lC~~sL~~~~~s~~~~~~~l~~~al~~a~~~a~~a~~~~~~l~--~~~~~~~~~~~al~dC~e 122 (208)
.....|+.+|+.|+||++|+++|++++ ..+|++|++++|++++++++++...+..+. ..+..+++++.|++||.|
T Consensus 36 ~~~k~I~s~C~~T~YP~lC~ssLs~~~---s~~p~~L~~aaL~vtl~~~~~a~~~~s~l~~~~~~~~~~r~k~Al~DC~e 112 (588)
T PLN02197 36 PQMKAVQGICQSTSDKASCVKTLEPVK---SDDPNKLIKAFMLATKDAITKSSNFTGQTEGNMGSSISPNNKAVLDYCKR 112 (588)
T ss_pred hhHHHHHHhcCCCCChHHHHHHHhhcc---CCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCHHHHHHHHHHHH
Confidence 345599999999999999999999988 358999999999999999999999888664 223468899999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhhccchhhhHhHHHHHHHHhhcchhHhHHhhccCCcchhhHHHHHHHHHHHHHHHHHHHHH
Q 042008 123 EIDDCVDELRKASNVLDNLRDALNKEDQMADIKTWVSAAMTDEDTCMDEFEENNVRESVKNKIKKSIVDLRKITSNSLAL 202 (208)
Q Consensus 123 ly~~a~~~L~~a~~~l~~~~~~~~~~~~~~d~~twLSAAlt~~~TC~Dgf~~~~~~~~v~~~l~~~~~~~~~L~snaLAi 202 (208)
+|++++|+|.+++.+++.. . ..+....+|++||||||||||+||+|||.+. .+++.|...+.++.+|+||+|||
T Consensus 113 Ll~davd~L~~Sl~~l~~~-~-~~~~~~~~DvqTWLSAALTnq~TClDGf~~~----~~k~~v~~~l~nv~~LtSNaLAi 186 (588)
T PLN02197 113 VFMYALEDLSTIVEEMGED-L-NQIGSKIDQLKQWLTGVYNYQTDCLDDIEED----DLRKTIGEGIANSKILTSNAIDI 186 (588)
T ss_pred HHHHHHHHHHHHHHHHhhc-c-cccccchhhHHHHHHHHHhChhhhhccccCc----chHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999731 1 1223457999999999999999999999864 46788889999999999999999
Q ss_pred HHhhc
Q 042008 203 INRLS 207 (208)
Q Consensus 203 v~~ls 207 (208)
+++++
T Consensus 187 v~~ls 191 (588)
T PLN02197 187 FHSVV 191 (588)
T ss_pred hhccc
Confidence 98864
No 15
>PLN02995 Probable pectinesterase/pectinesterase inhibitor
Probab=99.97 E-value=3.4e-30 Score=235.58 Aligned_cols=156 Identities=22% Similarity=0.305 Sum_probs=129.5
Q ss_pred HHHHcccCCCCChhhHHHhhhccCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHH
Q 042008 48 NFIKTSCNSTLYPALCYKYLSSHASTIK-TDSVKLCNTALTVNLKAANKTSALVTSMAKKGGLRPAEKAVIEDCNEEIDD 126 (208)
Q Consensus 48 ~~I~~~C~~T~~p~lC~~sL~~~~~s~~-~~~~~l~~~al~~a~~~a~~a~~~~~~l~~~~~~~~~~~~al~dC~ely~~ 126 (208)
..|+.+|..|.||++|+++|.+++.+.. .++.+++++++++++.++.++...+.++... ..+++.+.|++||+|+|++
T Consensus 35 ~~Irs~C~~T~YP~lC~sSLs~~~~s~s~~~~~~l~~~~~~aAl~~a~sa~~~i~~l~~~-~~~~r~~~AL~DC~ELl~D 113 (539)
T PLN02995 35 TDIDGWCDKTPYPDPCKCYFKNHNGFRQPTQISEFRVMLVEAAMDRAISARDELTNSGKN-CTDFKKQAVLADCIDLYGD 113 (539)
T ss_pred HHHHhhcCCCCChHHHHHHHhhccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHhhc-cCCHHHHHHHHHHHHHHHH
Confidence 4999999999999999999999887533 4888999999999999999999999888553 3678899999999999999
Q ss_pred HHHHHHHHHHHhhhhhhccchhhhHhHHHHHHHHhhcchhHhHHhhccCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042008 127 CVDELRKASNVLDNLRDALNKEDQMADIKTWVSAAMTDEDTCMDEFEENNVRESVKNKIKKSIVDLRKITSNSLALINRL 206 (208)
Q Consensus 127 a~~~L~~a~~~l~~~~~~~~~~~~~~d~~twLSAAlt~~~TC~Dgf~~~~~~~~v~~~l~~~~~~~~~L~snaLAiv~~l 206 (208)
++|+|++++.+++...+ ....+.++|++|||||||||++||+|||++.+..+.+++.+. ..++.+|+||+|||++.+
T Consensus 114 AvD~L~~Sl~~l~~~~~-~~~~~~~~DvqTWLSAALT~q~TC~DGF~~~~~~~~v~~~v~--~~~~~~ltSNaLAi~~~l 190 (539)
T PLN02995 114 TIMQLNRTLQGVSPKAG-AAKRCTDFDAQTWLSTALTNTETCRRGSSDLNVSDFITPIVS--NTKISHLISNCLAVNGAL 190 (539)
T ss_pred HHHHHHHHHHHHhhccc-cccccchhhHHHHHHHHhcchhhhhhhhccccchhhhhhhhh--hhhHHHHHHHHHHHhhhh
Confidence 99999999999985321 111234689999999999999999999987654433444433 268999999999999886
Q ss_pred c
Q 042008 207 S 207 (208)
Q Consensus 207 s 207 (208)
+
T Consensus 191 ~ 191 (539)
T PLN02995 191 L 191 (539)
T ss_pred c
Confidence 4
No 16
>PLN02301 pectinesterase/pectinesterase inhibitor
Probab=99.97 E-value=4.7e-30 Score=234.61 Aligned_cols=151 Identities=24% Similarity=0.390 Sum_probs=133.0
Q ss_pred hHHHHHcccCCCCChhhHHHhhhccCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhHHH
Q 042008 46 YKNFIKTSCNSTLYPALCYKYLSSHAST--IKTDSVKLCNTALTVNLKAANKTSALVTSMAKKGGLRPAEKAVIEDCNEE 123 (208)
Q Consensus 46 ~~~~I~~~C~~T~~p~lC~~sL~~~~~s--~~~~~~~l~~~al~~a~~~a~~a~~~~~~l~~~~~~~~~~~~al~dC~el 123 (208)
....|+.+|+.|+||++|+++|.+++.. ...+|.+|++++|+++++++..+...+.++.. ++.+++.+.|++||+|+
T Consensus 49 ~~~~Iks~C~~T~YP~~C~ssLs~~a~~~~~~~~p~~L~~aaL~vsl~~a~~a~~~vs~l~~-~~~~~~~~aAL~DC~EL 127 (548)
T PLN02301 49 PPSLLQTLCDRAHDQDSCQAMVSEIATNTVMKLNRVDLLQVLLKESTPHLQNTIEMASEIRI-RINDPRDKAALADCVEL 127 (548)
T ss_pred chHHHHHHhcCCCChHHHHHHHhhccCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCChHHHHHHHHHHHH
Confidence 4689999999999999999999998754 34589999999999999999999999998844 45788999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhccchhhhHhHHHHHHHHhhcchhHhHHhhccCCcchhhHHHHHHHHHHHHHHHHHHHHHH
Q 042008 124 IDDCVDELRKASNVLDNLRDALNKEDQMADIKTWVSAAMTDEDTCMDEFEENNVRESVKNKIKKSIVDLRKITSNSLALI 203 (208)
Q Consensus 124 y~~a~~~L~~a~~~l~~~~~~~~~~~~~~d~~twLSAAlt~~~TC~Dgf~~~~~~~~v~~~l~~~~~~~~~L~snaLAiv 203 (208)
|++++|+|++++.+++.... ..++|++|||||||||++||+|||++. .++.|...+.++.+|++|+|||+
T Consensus 128 l~davd~L~~Sl~~l~~~~~-----~~~~Dv~TWLSAALT~q~TC~DGF~~~-----~~~~~~~~l~n~~qL~SNsLAiv 197 (548)
T PLN02301 128 MDLSKDRIKDSVEALGNVTS-----KSHADAHTWLSSVLTNHVTCLDGINGP-----SRQSMKPGLKDLISRARTSLAIL 197 (548)
T ss_pred HHHHHHHHHHHHHHhhcccc-----cchHHHHHHHHHHhcchhhHHhhhhhh-----hhhhHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999875321 246899999999999999999999864 25678888999999999999999
Q ss_pred Hhhc
Q 042008 204 NRLS 207 (208)
Q Consensus 204 ~~ls 207 (208)
+.++
T Consensus 198 ~~l~ 201 (548)
T PLN02301 198 VSVS 201 (548)
T ss_pred cccc
Confidence 9865
No 17
>PF04043 PMEI: Plant invertase/pectin methylesterase inhibitor; InterPro: IPR006501 This entry represents a plant domain of about 200 amino acids, characterised by four conserved cysteine residues. This domain inhibits pectinesterase/pectin methylesterases (PMEs) and invertases through formation of a non-covalent 1:1 complex []. It has been implicated in the regulation of fruit development, carbohydrate metabolism and cell wall extension. It may also be involved in inhibiting microbial pathogen PMEs. It has been observed that it is often expressed as a large inactive preprotein []. This domain is also found at the N-termini of PMEs predicted from DNA sequences, suggesting that both PMEs and their inhibitors are expressed as a single polyprotein and subsequently processed. It has two disulphide bridges and is mainly alpha-helical in structure [].; GO: 0004857 enzyme inhibitor activity, 0030599 pectinesterase activity; PDB: 1X90_A 1X8Z_C 1X91_A 1XG2_B 1RJ4_D 2CJ4_B 2XQR_F 2CJ7_A 2CJ8_A 2CJ6_A ....
Probab=99.97 E-value=3.8e-29 Score=193.99 Aligned_cols=147 Identities=37% Similarity=0.598 Sum_probs=127.7
Q ss_pred hHHHHHcccCCCCChh-hHHHhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhHHHH
Q 042008 46 YKNFIKTSCNSTLYPA-LCYKYLSSHASTIKTDSVKLCNTALTVNLKAANKTSALVTSMAKKGGLRPAEKAVIEDCNEEI 124 (208)
Q Consensus 46 ~~~~I~~~C~~T~~p~-lC~~sL~~~~~s~~~~~~~l~~~al~~a~~~a~~a~~~~~~l~~~~~~~~~~~~al~dC~ely 124 (208)
....|+.+|++|+||. +|+.+|.+++.....|+++|++++|++++.++..+..++.++.+..+.++..+.+|++|.++|
T Consensus 3 ~~~~I~~~C~~T~~~~~~C~~~L~~~~~~~~~d~~~l~~~av~~a~~~~~~a~~~~~~l~~~~~~~~~~~~~l~~C~~~y 82 (152)
T PF04043_consen 3 TSSLIQDICKSTPYPYNLCLSTLSSDPSSSAADPKELARIAVQAALSNATSASAFISKLLKNPSKDPNAKQALQDCQELY 82 (152)
T ss_dssp -HHHHHHHHCTSS--HHHHHHHHHTCCCGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-S-THHHHHHHHHHHHHH
T ss_pred hHHHHHHHhhCCCCCcHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHhhHHHHHHHHHH
Confidence 5789999999999777 999999999877889999999999999999999999999998876567899999999999999
Q ss_pred HHHHHHHHHHHHHh--hhhhhccchhhhHhHHHHHHHHhhcchhHhHHhhccCCcchhhHHHHHHHHHHHHHHHHHHHHH
Q 042008 125 DDCVDELRKASNVL--DNLRDALNKEDQMADIKTWVSAAMTDEDTCMDEFEENNVRESVKNKIKKSIVDLRKITSNSLAL 202 (208)
Q Consensus 125 ~~a~~~L~~a~~~l--~~~~~~~~~~~~~~d~~twLSAAlt~~~TC~Dgf~~~~~~~~v~~~l~~~~~~~~~L~snaLAi 202 (208)
++++++|++++.+| ..+ .++++++|||+|+++++||+|||.+.. ++++++|...+.++.+|++|+|+|
T Consensus 83 ~~a~~~l~~a~~~l~~~~~--------~~~~~~~~lsaa~~~~~tC~~~f~~~~--~~~~~~l~~~~~~~~~l~s~aLai 152 (152)
T PF04043_consen 83 DDAVDSLQRALEALNSKNG--------DYDDARTWLSAALTNQDTCEDGFEEAG--SPVKSPLVQRNDNVEKLSSNALAI 152 (152)
T ss_dssp HHHHHHHHHHHHHH--HHT---------HHHHHHHHHHHHHHHHHHHHHC-TTS--SS--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhcccc--------hhHHHHHHHHHHHHHHHHHHHHhcccC--CCccchHHHHHHHHHHHHHHHhhC
Confidence 99999999999999 442 488999999999999999999995222 356889999999999999999997
No 18
>PLN02698 Probable pectinesterase/pectinesterase inhibitor
Probab=99.96 E-value=5e-29 Score=226.20 Aligned_cols=154 Identities=25% Similarity=0.426 Sum_probs=134.6
Q ss_pred hhHHHHHcccCCCCChhhHHHhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CHHHHHHHHHhHH
Q 042008 45 IYKNFIKTSCNSTLYPALCYKYLSSHASTIKTDSVKLCNTALTVNLKAANKTSALVTSMAKKGGL--RPAEKAVIEDCNE 122 (208)
Q Consensus 45 ~~~~~I~~~C~~T~~p~lC~~sL~~~~~s~~~~~~~l~~~al~~a~~~a~~a~~~~~~l~~~~~~--~~~~~~al~dC~e 122 (208)
+....|+.+|+.|+||++|+++|++.+. +|++|++++|++++.+++.+...+.++....+. +++.+.+++||+|
T Consensus 20 ~~~~~I~~~C~~T~YP~~C~ssLs~~~~----~p~~Li~aal~vtl~~~~~a~~~~~~l~~~~~~~~~~r~~~Al~DC~E 95 (497)
T PLN02698 20 AYQNEVQRECSFTKYPSLCVQTLRGLRH----DGVDIVSVLVNKTISETNLPLSSSMGSSYQLSLEEATYTPSVSDSCER 95 (497)
T ss_pred hHHHHHHHhccCCCChHHHHHHHhccCC----CHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCcChHHHHHHHHHHH
Confidence 5788999999999999999999999774 899999999999999999999999988654333 3777899999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhhccchhhhHhHHHHHHHHhhcchhHhHHhhccCCc--chhhHHHHHHHHHHHHHHHHHHH
Q 042008 123 EIDDCVDELRKASNVLDNLRDALNKEDQMADIKTWVSAAMTDEDTCMDEFEENNV--RESVKNKIKKSIVDLRKITSNSL 200 (208)
Q Consensus 123 ly~~a~~~L~~a~~~l~~~~~~~~~~~~~~d~~twLSAAlt~~~TC~Dgf~~~~~--~~~v~~~l~~~~~~~~~L~snaL 200 (208)
+|++++++|++++.+|..... +.++|++|||||||||++||+|||.+... .+++++.|.+.+.++.+|+||+|
T Consensus 96 ll~dsvd~L~~Sl~~l~~~~~-----~~~~Dv~TWLSAALT~q~TClDGF~~~~~~~~~~v~~~i~~~l~~~~~ltSNAL 170 (497)
T PLN02698 96 LMKMSLKRLRQSLLALKGSSR-----KNKHDIQTWLSAALTFQQACKDSIVDSTGYSGTSAISQISQKMDHLSRLVSNSL 170 (497)
T ss_pred HHHHHHHHHHHHHHHHhhccc-----cchhHHHHHHHHhhcchhhHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999886321 35799999999999999999999964321 24688899999999999999999
Q ss_pred HHHHhhc
Q 042008 201 ALINRLS 207 (208)
Q Consensus 201 Aiv~~ls 207 (208)
||++.++
T Consensus 171 Amv~~l~ 177 (497)
T PLN02698 171 ALVNRIT 177 (497)
T ss_pred HHHhhhh
Confidence 9999875
No 19
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional
Probab=99.96 E-value=1.1e-28 Score=225.81 Aligned_cols=149 Identities=26% Similarity=0.418 Sum_probs=129.7
Q ss_pred cccCCCCChhhHHHhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCCCHHHHHHHHHhHHHHHHH
Q 042008 52 TSCNSTLYPALCYKYLSSHASTIKTDSVKLCNTALTVNLKAANKTSALVTSMAKK----GGLRPAEKAVIEDCNEEIDDC 127 (208)
Q Consensus 52 ~~C~~T~~p~lC~~sL~~~~~s~~~~~~~l~~~al~~a~~~a~~a~~~~~~l~~~----~~~~~~~~~al~dC~ely~~a 127 (208)
.+|+.|+||++|+++|++++.+ ..+|+++++.+|++++.++..+...+.++... ++.+++.+.|++||+|+++++
T Consensus 4 ~~C~~T~YP~lC~ssLs~~~~~-~~~p~~l~~aaL~vtl~~a~~a~~~vs~l~~~~~~~~~~~~r~~~AL~DC~ELlddS 82 (538)
T PLN03043 4 LACKSTLYPKLCRSILSTVKSS-PSDPYEYGKFSVKQCLKQARRLSKVINYYLTHENQPGKMTHEEIGALADCGELSELN 82 (538)
T ss_pred cccCCCCCcHHHHHHHhhccCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCHHHHHHHHHHHHHHHHH
Confidence 5799999999999999987755 35899999999999999999999999988632 246788899999999999999
Q ss_pred HHHHHHHHHHhhhhhhccchhhhHhHHHHHHHHhhcchhHhHHhhccCCcchhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 042008 128 VDELRKASNVLDNLRDALNKEDQMADIKTWVSAAMTDEDTCMDEFEENNVRESVKNKIKKSIVDLRKITSNSLALINR 205 (208)
Q Consensus 128 ~~~L~~a~~~l~~~~~~~~~~~~~~d~~twLSAAlt~~~TC~Dgf~~~~~~~~v~~~l~~~~~~~~~L~snaLAiv~~ 205 (208)
+|+|.+++.+|+... .......+|++||||||||||+||+|||.+.+ +.+++.|...+.++.+|+||+|||++.
T Consensus 83 vD~L~~Sl~~L~~~~--~~~~~~~~DvqTWLSAALTnqdTClDGF~~~~--~~~k~~i~~~l~nvt~LtSNaLAlv~~ 156 (538)
T PLN03043 83 VDYLETISSELKSAE--LMTDALVERVTSLLSGVVTNQQTCYDGLVDSK--SSFAAALGAPLGNLTRLYSVSLGLVSH 156 (538)
T ss_pred HHHHHHHHHHHhccc--cccccchhhHHHhHHHhhcChhhhhchhhccc--hhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999997532 11234578999999999999999999998654 468888999999999999999999985
No 20
>PLN02933 Probable pectinesterase/pectinesterase inhibitor
Probab=99.91 E-value=3e-23 Score=188.85 Aligned_cols=127 Identities=27% Similarity=0.441 Sum_probs=111.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhccchhhhHh
Q 042008 75 KTDSVKLCNTALTVNLKAANKTSALVTSMAKKG--GLRPAEKAVIEDCNEEIDDCVDELRKASNVLDNLRDALNKEDQMA 152 (208)
Q Consensus 75 ~~~~~~l~~~al~~a~~~a~~a~~~~~~l~~~~--~~~~~~~~al~dC~ely~~a~~~L~~a~~~l~~~~~~~~~~~~~~ 152 (208)
..+|++|++++|++++.++.++...+.++.... +.+++++.|++||+|+|++++++|++++.+++... ..++
T Consensus 48 ~~~~~~L~~aaL~vtl~~a~~a~~~vs~L~~~~~~~l~~r~~~Al~DC~El~~davd~L~~S~~~l~~~~------~~~~ 121 (530)
T PLN02933 48 TKTIPELIIADLNLTILKVNLASSNFSDLQTRLGPNLTHRERCAFEDCLGLLDDTISDLTTAISKLRSSS------PEFN 121 (530)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc------cchh
Confidence 368899999999999999999999999886532 46889999999999999999999999999987521 1479
Q ss_pred HHHHHHHHhhcchhHhHHhhccCC------cchhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 042008 153 DIKTWVSAAMTDEDTCMDEFEENN------VRESVKNKIKKSIVDLRKITSNSLALINRLS 207 (208)
Q Consensus 153 d~~twLSAAlt~~~TC~Dgf~~~~------~~~~v~~~l~~~~~~~~~L~snaLAiv~~ls 207 (208)
|++|||||||||++||+|||++.+ +.+.+++.|.+.+.++.+|+||+|||+++++
T Consensus 122 Dv~TWLSAALT~q~TC~DGF~~~~~~~~~~~~~~vk~~v~~~l~~v~~LtSNALAlv~~ls 182 (530)
T PLN02933 122 DVSMLLSNAMTNQDTCLDGFSTSDNENNNDMTYELPENLKESILDISNHLSNSLAMLQNIS 182 (530)
T ss_pred HHHHHHHHHhcchhhHhhhhhccCccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 999999999999999999998654 2346888999999999999999999999765
No 21
>PLN02201 probable pectinesterase/pectinesterase inhibitor
Probab=99.90 E-value=7.3e-23 Score=186.30 Aligned_cols=125 Identities=22% Similarity=0.336 Sum_probs=105.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhc-cchhhhHhHHHHH
Q 042008 79 VKLCNTALTVNLKAANKTSALVTSMAKKGGLRPAEKAVIEDCNEEIDDCVDELRKASNVLDNLRDA-LNKEDQMADIKTW 157 (208)
Q Consensus 79 ~~l~~~al~~a~~~a~~a~~~~~~l~~~~~~~~~~~~al~dC~ely~~a~~~L~~a~~~l~~~~~~-~~~~~~~~d~~tw 157 (208)
..+++++|++++++++++...+.++... ..+++.+.|++||+|++++++|+|++++.+|+...+. .......+|++||
T Consensus 38 ~~~~~~~L~~tl~~a~~a~~~vs~l~~~-~~~~r~~~Al~DC~ELl~davD~L~~Sl~eL~~~~~~~~~~~~~~~DvqTW 116 (520)
T PLN02201 38 PSEFVSSLKTTVDVIRKVVSIVSQFDKV-FGDSRLSNAISDCLDLLDFAAEELSWSISASQNPNGKDNSTGDVGSDLRTW 116 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc-cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHH
Confidence 5788889999999999999999888653 3578899999999999999999999999999753210 0013357999999
Q ss_pred HHHhhcchhHhHHhhccCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042008 158 VSAAMTDEDTCMDEFEENNVRESVKNKIKKSIVDLRKITSNSLALINRL 206 (208)
Q Consensus 158 LSAAlt~~~TC~Dgf~~~~~~~~v~~~l~~~~~~~~~L~snaLAiv~~l 206 (208)
|||||||++||+|||++.+ +.+++.|...+.++.+|+||+|||+++.
T Consensus 117 LSAALTnq~TClDGF~~~~--~~~k~~v~~~l~nvt~LtSNaLALv~~~ 163 (520)
T PLN02201 117 LSAALSNQDTCIEGFDGTN--GIVKKLVAGSLSQVGSTVRELLTMVHPP 163 (520)
T ss_pred HHhhhcchhhhhhhhhccc--cchhHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999999999998754 4577888889999999999999999863
No 22
>PLN02170 probable pectinesterase/pectinesterase inhibitor
Probab=99.90 E-value=4.7e-23 Score=187.11 Aligned_cols=181 Identities=22% Similarity=0.252 Sum_probs=123.2
Q ss_pred CCCccccccchhHHHHHHHHHHHHHH--hccCCC--CCCCCCCCCcchhhHHHHHcccCCCCChhhHHHhhhccCCCCCC
Q 042008 1 MEARSFTIPSCSRLFFALTVLLLISN--INPTLA--GTSTTAKSNSLKIYKNFIKTSCNSTLYPALCYKYLSSHASTIKT 76 (208)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~I~~~C~~T~~p~lC~~sL~~~~~s~~~ 76 (208)
|.+.+|.+|-+.+.++.+++|.+-.+ ..-..+ ..|.|.+........+.+++. +||+.|+.+|++...+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~s~~~~~--- 73 (529)
T PLN02170 1 MMASSSSISNHKFPITLMFLLILNFLYLSAVVFASNSNSHFSKFSRHPNSDSSSRSS----PSSSSKQGFLSSVQES--- 73 (529)
T ss_pred CCccccccccCccchhhHHHHHHHHHHHHHHHhhccCCCCCchhccCCCccccccCC----CCcchhhhhhhhhhcc---
Confidence 66788999988877666655544333 221111 111121110001123333333 9999999999976443
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhccchhhhHhHHHH
Q 042008 77 DSVKLCNTALTVNLKAANKTSALVTSMAKKGGLRPAEKAVIEDCNEEIDDCVDELRKASNVLDNLRDALNKEDQMADIKT 156 (208)
Q Consensus 77 ~~~~l~~~al~~a~~~a~~a~~~~~~l~~~~~~~~~~~~al~dC~ely~~a~~~L~~a~~~l~~~~~~~~~~~~~~d~~t 156 (208)
-|..++..++++.+....... ......|++||+|+|++++++|.++++.... .+..+|++|
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~------------~~~~~~Al~DC~ELlddavd~L~~S~~~~~~-------~~~~~DvqT 134 (529)
T PLN02170 74 MNHALFARSLAFNLTLSHRTV------------QTHTFDPVNDCLELLDDTLDMLSRIVVIKHA-------DHDEEDVHT 134 (529)
T ss_pred ChHHHHHhhhHhhhhhhhhhc------------ccchhHHHHHHHHHHHHHHHHHHHHHHhhcc-------ccchhHHHH
Confidence 356677777777555221111 1122679999999999999999999965432 135899999
Q ss_pred HHHHhhcchhHhHHhhccCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 042008 157 WVSAAMTDEDTCMDEFEENNVRESVKNKIKKSIVDLRKITSNSLALINRLS 207 (208)
Q Consensus 157 wLSAAlt~~~TC~Dgf~~~~~~~~v~~~l~~~~~~~~~L~snaLAiv~~ls 207 (208)
|||||||||+||+|||++.+....++..|...+.++.+|+||+|||+++++
T Consensus 135 WLSAALTnq~TClDGf~~~~~~~~~~~~~~~~l~nv~eLtSNALALv~~~~ 185 (529)
T PLN02170 135 WLSAALTNQETCEQSLQEKSSSYKHGLAMDFVARNLTGLLTNSLDLFVSVK 185 (529)
T ss_pred HHHHHHhchhhHhhhhhccCccchhHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 999999999999999987654445677788888999999999999998764
No 23
>PLN02488 probable pectinesterase/pectinesterase inhibitor
Probab=99.88 E-value=3.8e-22 Score=179.87 Aligned_cols=151 Identities=18% Similarity=0.182 Sum_probs=126.2
Q ss_pred HcccCCCCChhhHHHhhhccC----CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHh----HH
Q 042008 51 KTSCNSTLYPALCYKYLSSHA----STIKTDSVKLCNTALTVNLKAANKTSALVTSMAKKGGLRPAEKAVIEDC----NE 122 (208)
Q Consensus 51 ~~~C~~T~~p~lC~~sL~~~~----~s~~~~~~~l~~~al~~a~~~a~~a~~~~~~l~~~~~~~~~~~~al~dC----~e 122 (208)
..+|..++||+.|...+.... .....++.+++.++|+.++.++..+...+.++...-..+++++.|++|| +|
T Consensus 2 ~~~c~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~a~~dc~~~c~e 81 (509)
T PLN02488 2 IGVCKGYDDKQSCQNLLLELKTVSSSLSEMRCRDLLIIVLKNSVWRIDMAMIGVMEDTKLLEEMENDMLGVKEDTNLFEE 81 (509)
T ss_pred ceecCCCCChHHHHHHHHhhhccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhhHHHhHHHHHH
Confidence 357999999999999987755 3334568899999999999999999999988876542378899999999 99
Q ss_pred HHHHHHHHHHHHHHHhhhhhhccchhhhHhHHHHHHHHhhcchhHhHHhhccCCcchhhHHHHHHHHHHHHHHHHHHHHH
Q 042008 123 EIDDCVDELRKASNVLDNLRDALNKEDQMADIKTWVSAAMTDEDTCMDEFEENNVRESVKNKIKKSIVDLRKITSNSLAL 202 (208)
Q Consensus 123 ly~~a~~~L~~a~~~l~~~~~~~~~~~~~~d~~twLSAAlt~~~TC~Dgf~~~~~~~~v~~~l~~~~~~~~~L~snaLAi 202 (208)
+|++++++|.+++..+...+. .. ....+|++||||||||||+||+|||.+ +.++..|...+.++.+|+||+|||
T Consensus 82 l~~~~~~~l~~s~~~~~~~~~-~~-~~~~~d~~twLSa~lt~q~TC~dg~~~----~~~~~~~~~~l~~~~~~~sn~La~ 155 (509)
T PLN02488 82 MMESAKDRMIRSVEELLGGES-PN-LGSYENVHTWLSGVLTSYITCIDEIGE----GAYKRRVEPELEDLISRARVALAI 155 (509)
T ss_pred HHHHHHHHHHHHHHHhhcccc-cc-cCcHHHHHHHHHHhHhchhhHhccccC----cchHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999963211 11 123589999999999999999999953 257788888999999999999999
Q ss_pred HHhhc
Q 042008 203 INRLS 207 (208)
Q Consensus 203 v~~ls 207 (208)
+..++
T Consensus 156 ~~~~~ 160 (509)
T PLN02488 156 FISIS 160 (509)
T ss_pred hcccc
Confidence 98764
No 24
>PLN02916 pectinesterase family protein
Probab=99.69 E-value=1.7e-16 Score=143.92 Aligned_cols=85 Identities=22% Similarity=0.379 Sum_probs=70.1
Q ss_pred CCHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhccchhhhHhHHHHHHHHhhcchhHhHHhhccCCcchhhHHHHHHH
Q 042008 109 LRPAEKAVIEDCNEEIDDCVDELRKASNVLDNLRDALNKEDQMADIKTWVSAAMTDEDTCMDEFEENNVRESVKNKIKKS 188 (208)
Q Consensus 109 ~~~~~~~al~dC~ely~~a~~~L~~a~~~l~~~~~~~~~~~~~~d~~twLSAAlt~~~TC~Dgf~~~~~~~~v~~~l~~~ 188 (208)
.+-....|++||+|+|++++++|.+++..+... ..+|++||||||||||+||+|||.+.+. .. ...
T Consensus 57 ~~~~~~~Al~DC~ELl~dSvd~L~~Sl~~~~~~--------~~~DvqTWLSAALTnq~TClDGf~~~~~---~~---~~~ 122 (502)
T PLN02916 57 SYYNLGEALSDCEKLYDESEARLSKLLVSHENF--------TVEDARTWLSGVLANHHTCLDGLEQKGQ---GH---KPM 122 (502)
T ss_pred CcccHhHHHHHHHHHHHHHHHHHHHHHHhhccC--------chHHHHHHHHHHHhCHhHHHHhhhhccc---cc---hHH
Confidence 345567899999999999999999999876531 3699999999999999999999986531 12 223
Q ss_pred HHHHHHHHHHHHHHHHhhc
Q 042008 189 IVDLRKITSNSLALINRLS 207 (208)
Q Consensus 189 ~~~~~~L~snaLAiv~~ls 207 (208)
+.++.+|+||+|||+++++
T Consensus 123 v~nvt~ltSNaLAlv~~~~ 141 (502)
T PLN02916 123 AHNVTFVLSEALALYKKSR 141 (502)
T ss_pred HHHHHHHHHHHHHHhhhhh
Confidence 6799999999999998865
No 25
>PF13956 Ibs_toxin: Toxin Ibs, type I toxin-antitoxin system
Probab=71.54 E-value=1.7 Score=21.49 Aligned_cols=15 Identities=53% Similarity=0.598 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHh
Q 042008 13 RLFFALTVLLLISNI 27 (208)
Q Consensus 13 ~~~~~~~~l~~~~~~ 27 (208)
+.+|.|.+||+.+|.
T Consensus 3 k~vIIlvvLLliSf~ 17 (19)
T PF13956_consen 3 KLVIILVVLLLISFP 17 (19)
T ss_pred eehHHHHHHHhcccc
Confidence 356777888887764
No 26
>KOG1733 consensus Mitochondrial import inner membrane translocase, subunit TIM13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.36 E-value=34 Score=24.39 Aligned_cols=51 Identities=16% Similarity=0.232 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHH-----HHhcC--CCCHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 042008 86 LTVNLKAANKTSALVTS-----MAKKG--GLRPAEKAVIEDCNEEIDDCVDELRKASN 136 (208)
Q Consensus 86 l~~a~~~a~~a~~~~~~-----l~~~~--~~~~~~~~al~dC~ely~~a~~~L~~a~~ 136 (208)
.+.+..+|.+....+.. -+..+ .++...+.|+.-|.+-|-++-.-+.++..
T Consensus 28 qqlAvAnAqeLv~kisekCf~KCit~PGssl~~~e~~Cis~CmdRyMdawniVSrty~ 85 (97)
T KOG1733|consen 28 QQLAVANAQELVSKISEKCFDKCITKPGSSLDSSEKSCISRCMDRYMDAWNIVSRTYI 85 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566665554432 12222 36788999999999999999888877653
No 27
>PF07870 DUF1657: Protein of unknown function (DUF1657); InterPro: IPR012452 This domain appears to be restricted to the Bacillales.
Probab=58.50 E-value=43 Score=20.94 Aligned_cols=43 Identities=16% Similarity=0.318 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHHHHHHH
Q 042008 89 NLKAANKTSALVTSMAKKGGLRPAEKAVIEDCNEEIDDCVDELR 132 (208)
Q Consensus 89 a~~~a~~a~~~~~~l~~~~~~~~~~~~al~dC~ely~~a~~~L~ 132 (208)
++..+.++...+..+.-. ..|+..+..++.|.+..+..+.+|+
T Consensus 5 ~lAslK~~qA~Le~fal~-T~d~~AK~~y~~~a~~l~~ii~~L~ 47 (50)
T PF07870_consen 5 TLASLKKAQADLETFALQ-TQDQEAKQMYEQAAQQLEEIIQDLE 47 (50)
T ss_pred HHHHHHHHHhhHHHHHhh-cCCHHHHHHHHHHHHHHHHHHHHhH
Confidence 344445555555444332 3578888999999998888888775
No 28
>PF02953 zf-Tim10_DDP: Tim10/DDP family zinc finger; InterPro: IPR004217 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a putative zinc binding domain with four conserved cysteine residues. Members of this family include subunits 8, 9, 10 and 13 of the mitochondrial inner membrane translocase complex, which are involved in mitochondrial protein import [, ]. Defects in TIM8 are the cause of 2 human syndromes: Mohr-Tranebjaerg syndrome (MTS) [MIM:304700]; also known as dystonia-deafness syndrome (DDS) or X-linked progressive deafness type 1 (DFN-1). It is a recessive neurodegenerative syndrome characterised by postlingual progressive sensorineural deafness as the first presenting symptom in early childhood, followed by progressive dystonia, spasticity, dysphagia, mental deterioration, paranoia and cortical blindness. Jensen syndrome [MIM:311150]; also known as opticoacoustic nerve atrophy with dementia. This X-linked disease is characterised by deafness, blindness and muscle weakness. The small alpha helical proteins Tim8 and Tim13 assemble into a hexameric complex which can bind Tim23 as its substrate and chaperone the hydrophobic Tim23 across the aqueous membrane space []. More information on zinc fingers can be found at Protein of the Month: Zinc Fingers [].; GO: 0006626 protein targeting to mitochondrion, 0045039 protein import into mitochondrial inner membrane, 0042719 mitochondrial intermembrane space protein transporter complex; PDB: 2BSK_B 3CJH_A 3DXR_A.
Probab=44.92 E-value=65 Score=20.88 Aligned_cols=29 Identities=21% Similarity=0.332 Sum_probs=23.0
Q ss_pred CCCHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 042008 108 GLRPAEKAVIEDCNEEIDDCVDELRKASN 136 (208)
Q Consensus 108 ~~~~~~~~al~dC~ely~~a~~~L~~a~~ 136 (208)
.++..+..++..|.+-|-++...+.+.+.
T Consensus 36 ~L~~~E~~Ci~~C~~ky~~~~~~v~~~~~ 64 (66)
T PF02953_consen 36 SLSSKEESCIDNCVDKYIDTNQFVSKRFQ 64 (66)
T ss_dssp S--HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788899999999999999888877654
No 29
>PF14290 DUF4370: Domain of unknown function (DUF4370)
Probab=44.45 E-value=1.8e+02 Score=23.97 Aligned_cols=81 Identities=17% Similarity=0.097 Sum_probs=51.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhhhhhhccchhhhHhHHHHHHHHhhcchhHhHHhhccCCcc--hhhHHHHHHHHHH
Q 042008 114 KAVIEDCNEEIDDCVDELRKASNVLDNLRDALNKEDQMADIKTWVSAAMTDEDTCMDEFEENNVR--ESVKNKIKKSIVD 191 (208)
Q Consensus 114 ~~al~dC~ely~~a~~~L~~a~~~l~~~~~~~~~~~~~~d~~twLSAAlt~~~TC~Dgf~~~~~~--~~v~~~l~~~~~~ 191 (208)
..|-+-|.|+++. +..|...+..+-...+ .++..--+..+.-|-++-.-.-+-+|.|...... .+|...+...+.+
T Consensus 130 fRAAeAvEeFgG~-L~tLrm~idDl~GlsG-Env~PLP~~~~~Al~t~y~rY~~YL~sFgp~E~yLrKKVE~ELGtkmi~ 207 (239)
T PF14290_consen 130 FRAAEAVEEFGGI-LVTLRMEIDDLCGLSG-ENVKPLPDYIENALRTAYKRYMTYLDSFGPDEHYLRKKVEMELGTKMIH 207 (239)
T ss_pred HHHHHHHHHhhhh-HHHHHHHHHHhcCCCC-CCCCCCcHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhhhhHHH
Confidence 3456667777666 8888888888766544 3444455566666888888888999999754210 1234444444545
Q ss_pred HHHHH
Q 042008 192 LRKIT 196 (208)
Q Consensus 192 ~~~L~ 196 (208)
+.+-|
T Consensus 208 lKmRc 212 (239)
T PF14290_consen 208 LKMRC 212 (239)
T ss_pred Hhhhh
Confidence 54444
No 30
>KOG4514 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.25 E-value=1.9e+02 Score=23.47 Aligned_cols=58 Identities=17% Similarity=0.248 Sum_probs=37.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 042008 75 KTDSVKLCNTALTVNLKAANKTSALVTSMAKKGG-LRPAEKAVIEDCNEEIDDCVDELRKASNV 137 (208)
Q Consensus 75 ~~~~~~l~~~al~~a~~~a~~a~~~~~~l~~~~~-~~~~~~~al~dC~ely~~a~~~L~~a~~~ 137 (208)
..||.-|..+-. .++...+.+..++.+-+ .-.....---+|++.|.++++.|.+++.+
T Consensus 121 ~vDp~VL~DlE~-----~~~el~~~vD~llr~lgg~lh~is~lt~~~vq~yr~aV~kl~d~~Da 179 (222)
T KOG4514|consen 121 EVDPSVLSDLEL-----EAQELASSVDNLLRNLGGLLHSISSLTADNVQVYRNAVNKLTDTLDA 179 (222)
T ss_pred CCChHHHHHHHH-----HHHHHHHHHHHHHHHhhhHHHHHHHhhhhHHHHHHHHHHHHHHHhhh
Confidence 457766655433 35566666666665422 22334455678999999999999887764
No 31
>PLN02749 Uncharacterized protein At1g47420
Probab=27.87 E-value=3e+02 Score=21.61 Aligned_cols=81 Identities=16% Similarity=0.108 Sum_probs=51.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhhhhhhccchhhhHhHHHHHHHHhhcchhHhHHhhccCCcc--hhhHHHHHHHHHH
Q 042008 114 KAVIEDCNEEIDDCVDELRKASNVLDNLRDALNKEDQMADIKTWVSAAMTDEDTCMDEFEENNVR--ESVKNKIKKSIVD 191 (208)
Q Consensus 114 ~~al~dC~ely~~a~~~L~~a~~~l~~~~~~~~~~~~~~d~~twLSAAlt~~~TC~Dgf~~~~~~--~~v~~~l~~~~~~ 191 (208)
..|-+-|.++++ .+..|...+..+-...+ .++..--+..+.-|-++-.-..+-+|.|...... .+|...+...+.+
T Consensus 64 frAAeAveeFgG-~L~sLrmeidDl~GlsG-Env~PLPd~~~~Al~tay~rY~~YLdsFgp~E~yLrKKVE~ELG~kmi~ 141 (173)
T PLN02749 64 FRAAEAVEEFGG-TLVSLRMEIDDLIGLSG-ENVKPLPDYIENALETAYQRYAAYLDSFGPEENYLKKKVEMELGTKMIH 141 (173)
T ss_pred HHHHHHHHHHhh-HHHHHHHHHHHhcCCCC-CCCCCCcHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhHHHHH
Confidence 345666777776 88888888888776544 3444445556666888888888999999754210 1233444444445
Q ss_pred HHHHH
Q 042008 192 LRKIT 196 (208)
Q Consensus 192 ~~~L~ 196 (208)
+.+-|
T Consensus 142 lKmRc 146 (173)
T PLN02749 142 LKMRC 146 (173)
T ss_pred HHhhh
Confidence 55444
No 32
>PF02609 Exonuc_VII_S: Exonuclease VII small subunit; InterPro: IPR003761 Exonuclease VII is composed of two non-identical subunits; one large subunit and 4 small ones []. This enzyme catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield nucleoside 5'-phosphates.; GO: 0008855 exodeoxyribonuclease VII activity, 0006308 DNA catabolic process, 0009318 exodeoxyribonuclease VII complex; PDB: 1VP7_F.
Probab=27.65 E-value=1.6e+02 Score=18.32 Aligned_cols=44 Identities=11% Similarity=0.244 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHhhhhhhccchhhhHhHHHHHHHHhhcchhHhHHhhc
Q 042008 124 IDDCVDELRKASNVLDNLRDALNKEDQMADIKTWVSAAMTDEDTCMDEFE 173 (208)
Q Consensus 124 y~~a~~~L~~a~~~l~~~~~~~~~~~~~~d~~twLSAAlt~~~TC~Dgf~ 173 (208)
|+.++.+|+..+..|.+++. ..++......-++.-..-|.+-+.
T Consensus 1 fEe~~~~Le~Iv~~Le~~~~------sLdes~~lyeeg~~l~~~c~~~L~ 44 (53)
T PF02609_consen 1 FEEAMERLEEIVEKLESGEL------SLDESLKLYEEGMELIKKCQERLE 44 (53)
T ss_dssp HHHHHHHHHHHHHHHHTT-S-------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777788888887776542 356666666666666677776655
No 33
>PRK01614 tatE twin arginine translocase protein A; Validated
Probab=27.63 E-value=54 Score=22.99 Aligned_cols=18 Identities=17% Similarity=0.241 Sum_probs=10.2
Q ss_pred ccccchhHHHHHHHHHHH
Q 042008 6 FTIPSCSRLFFALTVLLL 23 (208)
Q Consensus 6 ~~~~~~~~~~~~~~~l~~ 23 (208)
|.|.-++.++|++.+||+
T Consensus 2 ~GlG~~ELLIIlvIvLLL 19 (85)
T PRK01614 2 EGLSITKLLVVGILIVLL 19 (85)
T ss_pred CCccHHHHHHHHHHHHHH
Confidence 345556766666655543
No 34
>PLN03207 stomagen; Provisional
Probab=25.44 E-value=96 Score=22.47 Aligned_cols=26 Identities=31% Similarity=0.400 Sum_probs=18.3
Q ss_pred ccchhHHHHHHHHHHHHHHhccCCCC
Q 042008 8 IPSCSRLFFALTVLLLISNINPTLAG 33 (208)
Q Consensus 8 ~~~~~~~~~~~~~l~~~~~~~~~~~~ 33 (208)
.+++-.++++|++|||+.+.+.+.++
T Consensus 9 tt~~~~lffLl~~llla~~v~qgsr~ 34 (113)
T PLN03207 9 TTRCLTLFFLLFFLLLGAYVIQGSRN 34 (113)
T ss_pred cchhHHHHHHHHHHHHHHHHHhcccc
Confidence 45566677777888888888877443
No 35
>PF10311 Ilm1: Increased loss of mitochondrial DNA protein 1; InterPro: IPR018815 This is a family of proteins of approximately 200 residues that are conserved in fungi. Ilm1 is part of the peroxisome, a complex that is the sole site of beta-oxidation in Saccharomyces cerevisiae (Baker's yeast) and known to be required for optimal growth in the presence of fatty acid. Ilm1 may participate in the control of the C16/C18 ratio since it interacts strongly with Mga2p, a transcription factor that controls expression of Ole1, the sole fatty acyl desaturase in S. cerevisiae responsible for conversion of the saturated fatty acids stearate (C18) and palmitate (C16) to oleate and palmitoleate, respectively [].
Probab=23.39 E-value=97 Score=24.54 Aligned_cols=28 Identities=29% Similarity=0.278 Sum_probs=22.3
Q ss_pred CccccccchhHHHHHHHHHHHHHHhccC
Q 042008 3 ARSFTIPSCSRLFFALTVLLLISNINPT 30 (208)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 30 (208)
.|+|.-|+|+++++.+++++++..=...
T Consensus 46 ~~~~~~~s~~la~~~vll~~~alsDLi~ 73 (165)
T PF10311_consen 46 LRSFSRPSPPLAFCGVLLLFLALSDLIP 73 (165)
T ss_pred CCcCCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 5779999999999999888877654433
No 36
>PF03487 IL13: Interleukin-13; InterPro: IPR020470 Interleukin-13 (IL-13) is a pleiotropic cytokine which may be important in the regulation of the inflammatory and immune responses []. It inhibits inflammatory cytokine production and synergises with IL-2 in regulating interferon-gamma synthesis. The sequences of IL-4 and IL-13 are distantly related.; PDB: 3G6D_A 3L5W_J 3BPO_A 1GA3_A 1IK0_A 3L5X_A 3L5Y_A 1IJZ_A 3LB6_B.
Probab=23.12 E-value=99 Score=18.56 Aligned_cols=18 Identities=17% Similarity=0.610 Sum_probs=0.0
Q ss_pred HHHHHhhcchhHhHHhhccC
Q 042008 156 TWVSAAMTDEDTCMDEFEEN 175 (208)
Q Consensus 156 twLSAAlt~~~TC~Dgf~~~ 175 (208)
-|+..++. -||.-|+...
T Consensus 3 lwlt~via--ltClggLasP 20 (43)
T PF03487_consen 3 LWLTVVIA--LTCLGGLASP 20 (43)
T ss_dssp --------------------
T ss_pred HHHHHHHH--HHHhcccCCC
Confidence 47777764 7999998764
No 37
>KOG4841 consensus Dolichol-phosphate mannosyltransferase, subunit 3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=22.19 E-value=86 Score=22.15 Aligned_cols=25 Identities=20% Similarity=0.408 Sum_probs=22.1
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHhhh
Q 042008 116 VIEDCNEEIDDCVDELRKASNVLDN 140 (208)
Q Consensus 116 al~dC~ely~~a~~~L~~a~~~l~~ 140 (208)
-.+||.|-+-+-+.++++|.++++.
T Consensus 66 TfnDc~eA~veL~~~IkEAr~~L~r 90 (95)
T KOG4841|consen 66 TFNDCEEAAVELQSQIKEARADLAR 90 (95)
T ss_pred ccCCcHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999876
No 38
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=20.97 E-value=6.2e+02 Score=22.83 Aligned_cols=17 Identities=12% Similarity=-0.095 Sum_probs=13.2
Q ss_pred ccCCCCChhhHHHhhhc
Q 042008 53 SCNSTLYPALCYKYLSS 69 (208)
Q Consensus 53 ~C~~T~~p~lC~~sL~~ 69 (208)
.=.-|.|++.|+..+.-
T Consensus 212 L~sLt~HfDqC~~a~~~ 228 (412)
T PF04108_consen 212 LESLTNHFDQCVTAVRH 228 (412)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33358899999999984
No 39
>PF10360 DUF2433: Protein of unknown function (DUF2433); InterPro: IPR018829 This entry represents a conserved domain of 120 residues from a family fungal proteins. Their function is not known.
Probab=20.95 E-value=1.4e+02 Score=22.76 Aligned_cols=17 Identities=18% Similarity=0.515 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHhhc
Q 042008 191 DLRKITSNSLALINRLS 207 (208)
Q Consensus 191 ~~~~L~snaLAiv~~ls 207 (208)
.-++|+.+||.|+.++.
T Consensus 48 ~q~~LL~~AL~v~~kiP 64 (132)
T PF10360_consen 48 AQRNLLENALSVFDKIP 64 (132)
T ss_pred HHHHHHHHHHHHHHhCC
Confidence 36889999999998874
No 40
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=20.64 E-value=8.4e+02 Score=24.19 Aligned_cols=19 Identities=16% Similarity=0.289 Sum_probs=12.3
Q ss_pred chhhhHhHHHHHHHHhhcc
Q 042008 146 NKEDQMADIKTWVSAAMTD 164 (208)
Q Consensus 146 ~~~~~~~d~~twLSAAlt~ 164 (208)
.+.....+++.-|..++.+
T Consensus 271 qL~~~L~~vK~~L~~~l~~ 289 (806)
T PF05478_consen 271 QLRDGLRGVKRDLNNTLQD 289 (806)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3444566777777777766
No 41
>PF08287 DASH_Spc19: Spc19; InterPro: IPR013251 Spc19 is a component of the DASH complex. The DASH complex associates with the spindle pole body and is important for spindle and kinetochore integrity during cell division [, ].
Probab=20.41 E-value=4e+02 Score=20.69 Aligned_cols=24 Identities=21% Similarity=0.486 Sum_probs=14.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHhhh
Q 042008 117 IEDCNEEIDDCVDELRKASNVLDN 140 (208)
Q Consensus 117 l~dC~ely~~a~~~L~~a~~~l~~ 140 (208)
|.+|+.-+..++..|+.++.-++.
T Consensus 2 L~~cV~SL~~S~~lL~~Si~~L~~ 25 (153)
T PF08287_consen 2 LSNCVSSLRSSVQLLQSSIETLDS 25 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445666666666666666665554
No 42
>TIGR01280 xseB exodeoxyribonuclease VII, small subunit. This protein is the small subunit for exodeoxyribonuclease VII. Exodeoxyribonuclease VII is made of a complex of four small subunits to one large subunit. The complex degrades single-stranded DNA into large acid-insoluble oligonucleotides. These nucleotides are then degraded further into acid-soluble oligonucleotides.
Probab=20.37 E-value=2.5e+02 Score=18.51 Aligned_cols=45 Identities=11% Similarity=0.243 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHhhhhhhccchhhhHhHHHHHHHHhhcchhHhHHhhcc
Q 042008 124 IDDCVDELRKASNVLDNLRDALNKEDQMADIKTWVSAAMTDEDTCMDEFEE 174 (208)
Q Consensus 124 y~~a~~~L~~a~~~l~~~~~~~~~~~~~~d~~twLSAAlt~~~TC~Dgf~~ 174 (208)
|+.++.+|+..+..|..++. ..++......-++.-...|.+-+.+
T Consensus 3 fEe~l~~Le~Iv~~LE~~~l------~Leesl~lyeeG~~L~k~c~~~L~~ 47 (67)
T TIGR01280 3 FEEALSELEQIVQKLESGDL------ALEEALNLFERGMALARRCEKKLAQ 47 (67)
T ss_pred HHHHHHHHHHHHHHHHCCCC------CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777888888887777542 3566666666677777777776654
No 43
>PF08525 OapA_N: Opacity-associated protein A N-terminal motif; InterPro: IPR013731 This domain is found in the Haemophilus influenzae opacity-associated protein (OapA). It is required for efficient nasopharyngeal mucosal colonisation, and its expression is associated with a distinctive transparent colony phenotype. OapA is thought to be a secreted protein, and its expression exhibits high-frequency phase variation [, ]. This motif occurs at the N terminus of these proteins. It contains a conserved histidine followed by a run of hydrophobic residues. Many of the proteins in this entry are unassigned peptidases belonging to MEROPS peptidase family M23B.
Probab=20.08 E-value=1.4e+02 Score=16.46 Aligned_cols=20 Identities=20% Similarity=0.404 Sum_probs=10.4
Q ss_pred ccchhHHHHH-HHHHHHHHHh
Q 042008 8 IPSCSRLFFA-LTVLLLISNI 27 (208)
Q Consensus 8 ~~~~~~~~~~-~~~l~~~~~~ 27 (208)
.|..||..+. ++++++..+.
T Consensus 6 LP~~Hr~~l~~l~~v~l~ll~ 26 (30)
T PF08525_consen 6 LPKLHRRALIALSAVVLVLLL 26 (30)
T ss_pred CCHHHHHHHHHHHHHHHHHHh
Confidence 5667765544 4444444433
Done!