Query 042008
Match_columns 208
No_of_seqs 123 out of 844
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 22:37:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042008.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042008hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1xg2_B Pectinesterase inhibito 100.0 3.2E-34 1.1E-38 222.2 17.1 149 47-207 3-151 (153)
2 1x91_A Invertase/pectin methyl 100.0 6E-34 2.1E-38 220.9 15.2 148 46-207 4-151 (153)
3 2cj4_A Invertase inhibitor; pr 100.0 4.4E-33 1.5E-37 215.5 14.9 146 46-206 3-149 (150)
4 3cjh_B Mitochondrial import in 37.0 67 0.0023 20.0 4.7 29 109-137 34-62 (64)
5 1spf_A Pulmonary surfactant-as 36.9 27 0.00092 19.1 2.3 19 6-24 1-23 (35)
6 2bsk_B Mitochondrial import in 27.5 1.3E+02 0.0043 20.1 5.1 33 108-140 42-74 (90)
7 2bsk_A Mitochondrial import in 26.4 1.4E+02 0.0047 19.9 5.1 32 109-140 41-72 (89)
8 3dxr_A Mitochondrial import in 25.9 1.3E+02 0.0045 20.0 5.0 32 109-140 50-81 (89)
9 3dxr_B Mitochondrial import in 22.4 1.9E+02 0.0064 19.6 7.4 32 109-140 56-87 (95)
10 3cjh_A Mitochondrial import in 17.2 1.1E+02 0.0039 19.0 3.0 32 109-140 25-56 (64)
No 1
>1xg2_B Pectinesterase inhibitor; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Actinidia chinensis}
Probab=100.00 E-value=3.2e-34 Score=222.16 Aligned_cols=149 Identities=24% Similarity=0.423 Sum_probs=136.7
Q ss_pred HHHHHcccCCCCChhhHHHhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHH
Q 042008 47 KNFIKTSCNSTLYPALCYKYLSSHASTIKTDSVKLCNTALTVNLKAANKTSALVTSMAKKGGLRPAEKAVIEDCNEEIDD 126 (208)
Q Consensus 47 ~~~I~~~C~~T~~p~lC~~sL~~~~~s~~~~~~~l~~~al~~a~~~a~~a~~~~~~l~~~~~~~~~~~~al~dC~ely~~ 126 (208)
.+.|+.+|++|+||++|+++|.++|.+...|+++|+++++++++.++..+..++.++.+.. .+++.+.+++||.++|++
T Consensus 3 ~~~i~~~C~~T~~~~~C~~sL~~~~~~~~~~~~~l~~~ai~~~~~~a~~~~~~~~~l~~~~-~~~~~~~al~dC~e~y~~ 81 (153)
T 1xg2_B 3 NHLISEICPKTRNPSLCLQALESDPRSASKDLKGLGQFSIDIAQASAKQTSKIIASLTNQA-TDPKLKGRYETCSENYAD 81 (153)
T ss_dssp CHHHHHHGGGSSCHHHHHHHHHTCTTGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHhcCCCChHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999999887789999999999999999999999999987654 589999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhccchhhhHhHHHHHHHHhhcchhHhHHhhccCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042008 127 CVDELRKASNVLDNLRDALNKEDQMADIKTWVSAAMTDEDTCMDEFEENNVRESVKNKIKKSIVDLRKITSNSLALINRL 206 (208)
Q Consensus 127 a~~~L~~a~~~l~~~~~~~~~~~~~~d~~twLSAAlt~~~TC~Dgf~~~~~~~~v~~~l~~~~~~~~~L~snaLAiv~~l 206 (208)
++++|++++.+++.+ .++|+++|||+|++|++||+|||.+.+ .++++|...+.++.+|++|+|+|++.+
T Consensus 82 a~~~L~~a~~~l~~~--------~~~d~~t~lSaAlt~~~tC~dgf~~~~---~~~~~l~~~~~~~~~l~s~aLai~~~l 150 (153)
T 1xg2_B 82 AIDSLGQAKQFLTSG--------DYNSLNIYASAAFDGAGTCEDSFEGPP---NIPTQLHQADLKLEDLCDIVLVISNLL 150 (153)
T ss_dssp HHHHHHHHHHHHHHT--------CHHHHHHHHHHHHHHHHHHHHHCCSSS---CCCHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhC--------CHHHHHHHHHHHhcccchHHHHhccCC---CCCcHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999863 378999999999999999999998764 356789999999999999999999987
Q ss_pred c
Q 042008 207 S 207 (208)
Q Consensus 207 s 207 (208)
.
T Consensus 151 ~ 151 (153)
T 1xg2_B 151 P 151 (153)
T ss_dssp C
T ss_pred c
Confidence 4
No 2
>1x91_A Invertase/pectin methylesterase inhibitor family protein; four-helix bundle, alpha hairpin, disulfide bridge, domain- swapping, linker; 1.50A {Arabidopsis thaliana} SCOP: a.29.6.1 PDB: 1x8z_A 1x90_A
Probab=100.00 E-value=6e-34 Score=220.92 Aligned_cols=148 Identities=24% Similarity=0.391 Sum_probs=133.9
Q ss_pred hHHHHHcccCCCCChhhHHHhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhHHHHH
Q 042008 46 YKNFIKTSCNSTLYPALCYKYLSSHASTIKTDSVKLCNTALTVNLKAANKTSALVTSMAKKGGLRPAEKAVIEDCNEEID 125 (208)
Q Consensus 46 ~~~~I~~~C~~T~~p~lC~~sL~~~~~s~~~~~~~l~~~al~~a~~~a~~a~~~~~~l~~~~~~~~~~~~al~dC~ely~ 125 (208)
..+.|+.+|++|+||++|+++| .|.+...|+++|+++++++++.++..+..++.++.+.. .+++.+.+|+||.++|+
T Consensus 4 ~~~~i~~~C~~T~~~~~C~~sL--~p~~~~~~~~~l~~~a~~~~~~~a~~~~~~~~~l~~~~-~~~~~~~al~dC~e~y~ 80 (153)
T 1x91_A 4 DSSEMSTICDKTLNPSFCLKFL--NTKFASANLQALAKTTLDSTQARATQTLKKLQSIIDGG-VDPRSKLAYRSCVDEYE 80 (153)
T ss_dssp -CCSTTTGGGGSSCHHHHHHHH--HHTTCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHhCCCCChhHHHHHh--CcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHH
Confidence 3567899999999999999999 56566789999999999999999999999999988764 58999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhccchhhhHhHHHHHHHHhhcchhHhHHhhccCCcchhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 042008 126 DCVDELRKASNVLDNLRDALNKEDQMADIKTWVSAAMTDEDTCMDEFEENNVRESVKNKIKKSIVDLRKITSNSLALINR 205 (208)
Q Consensus 126 ~a~~~L~~a~~~l~~~~~~~~~~~~~~d~~twLSAAlt~~~TC~Dgf~~~~~~~~v~~~l~~~~~~~~~L~snaLAiv~~ 205 (208)
+++++|++++.+++.+ .++|+++|||+|++|++||+|||.+.+ +++++|..++.++.+|++|+|+|++.
T Consensus 81 ~a~~~L~~a~~~l~~~--------~~~d~~t~lSaAlt~~~tC~dgf~~~~---~~~~~l~~~~~~~~~l~s~aLai~~~ 149 (153)
T 1x91_A 81 SAIGNLEEAFEHLASG--------DGMGMNMKVSAALDGADTCLDDVKRLR---SVDSSVVNNSKTIKNLCGIALVISNM 149 (153)
T ss_dssp HHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHHHHHHHHHTTCS---SCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc--------CHHHHHHHHHHHHccHhHHHHHhccCC---CCcCHHHHHhHHHHHHHHHHHHHHHH
Confidence 9999999999999863 388999999999999999999998764 46788999999999999999999998
Q ss_pred hc
Q 042008 206 LS 207 (208)
Q Consensus 206 ls 207 (208)
+.
T Consensus 150 l~ 151 (153)
T 1x91_A 150 LP 151 (153)
T ss_dssp SC
T ss_pred cc
Confidence 75
No 3
>2cj4_A Invertase inhibitor; protein binding, four-helix bundle, helical hairpin; 1.63A {Nicotiana tabacum} SCOP: a.29.6.1 PDB: 2cj5_A 2cj6_A 2cj7_A 2cj8_A 1rj1_A 1rj4_A* 2xqr_B*
Probab=100.00 E-value=4.4e-33 Score=215.50 Aligned_cols=146 Identities=17% Similarity=0.245 Sum_probs=131.7
Q ss_pred hHHHHHcccCCCCChhhHHHhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhHHHHH
Q 042008 46 YKNFIKTSCNSTLYPALCYKYLSSHASTIKTDSVKLCNTALTVNLKAANKTSALVTSMAKKGGLRPAEKAVIEDCNEEID 125 (208)
Q Consensus 46 ~~~~I~~~C~~T~~p~lC~~sL~~~~~s~~~~~~~l~~~al~~a~~~a~~a~~~~~~l~~~~~~~~~~~~al~dC~ely~ 125 (208)
..+.|+.+|++|+||++|+++|.++|++...|+++|+++++++++.++..+..++.++.+.. .+++.+.+++||.++|+
T Consensus 3 ~~~~I~~~C~~T~~~~~C~~sL~~~~~s~~ad~~~la~~ai~~~~~~a~~~~~~i~~l~~~~-~~~~~~~al~dC~e~y~ 81 (150)
T 2cj4_A 3 MNNLVETTCKNTPNYQLCLKTLLSDKRSATGDITTLALIMVDAIKAKANQAAVTISKLRHSN-PPAAWKGPLKNCAFSYK 81 (150)
T ss_dssp -CHHHHHHHHTSSCHHHHHHHHHTSGGGTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC-CCGGGHHHHHHHHHHHH
T ss_pred chHHHHHHHcCCCCccHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHH
Confidence 46799999999999999999999999887889999999999999999999999999987654 46888999999999999
Q ss_pred HHH-HHHHHHHHHhhhhhhccchhhhHhHHHHHHHHhhcchhHhHHhhccCCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 042008 126 DCV-DELRKASNVLDNLRDALNKEDQMADIKTWVSAAMTDEDTCMDEFEENNVRESVKNKIKKSIVDLRKITSNSLALIN 204 (208)
Q Consensus 126 ~a~-~~L~~a~~~l~~~~~~~~~~~~~~d~~twLSAAlt~~~TC~Dgf~~~~~~~~v~~~l~~~~~~~~~L~snaLAiv~ 204 (208)
+++ ++|++++.+++.+ .++++++|||+|++|++||+|||.+. +++|..++.++.+|++|+|+|++
T Consensus 82 ~a~~~~L~~a~~~l~~~--------~~~~~~t~lsaAlt~~~tC~dgf~~~------~~pl~~~~~~~~~l~s~aLaii~ 147 (150)
T 2cj4_A 82 VILTASLPEAIEALTKG--------DPKFAEDGMVGSSGDAQECEEYFKGS------KSPFSALNIAVHELSDVGRAIVR 147 (150)
T ss_dssp HHHHTHHHHHHHHHHHS--------CHHHHHHHHHHHHHHHHHHHHTTTTS------CCTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHHHHHHHHhhCCC------CCccHHHHHHHHHHHHHHHHHHH
Confidence 999 7999999999763 37899999999999999999999842 33578889999999999999998
Q ss_pred hh
Q 042008 205 RL 206 (208)
Q Consensus 205 ~l 206 (208)
.+
T Consensus 148 ~l 149 (150)
T 2cj4_A 148 NL 149 (150)
T ss_dssp TT
T ss_pred hh
Confidence 75
No 4
>3cjh_B Mitochondrial import inner membrane translocase S TIM8; cyclic heterohexamer, chaperone, M binding, mitochondrion, protein transport; 2.60A {Saccharomyces cerevisiae}
Probab=36.99 E-value=67 Score=19.99 Aligned_cols=29 Identities=14% Similarity=0.215 Sum_probs=24.7
Q ss_pred CCHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 042008 109 LRPAEKAVIEDCNEEIDDCVDELRKASNV 137 (208)
Q Consensus 109 ~~~~~~~al~dC~ely~~a~~~L~~a~~~ 137 (208)
++..+..++..|.+-|-++-..+.+.+..
T Consensus 34 L~~~E~~Ci~~Cv~ky~~~~~~v~~~~~~ 62 (64)
T 3cjh_B 34 LSSQEEQCLSNCVNRFLDTNIRIVNGLQN 62 (64)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChhHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 57888999999999999998888776654
No 5
>1spf_A Pulmonary surfactant-associated polypeptide C; lipoprotein(surface FILM); NMR {Sus scrofa} SCOP: j.35.1.1
Probab=36.93 E-value=27 Score=19.12 Aligned_cols=19 Identities=37% Similarity=0.915 Sum_probs=11.6
Q ss_pred ccccchh----HHHHHHHHHHHH
Q 042008 6 FTIPSCS----RLFFALTVLLLI 24 (208)
Q Consensus 6 ~~~~~~~----~~~~~~~~l~~~ 24 (208)
|.||.++ |++|...+..+.
T Consensus 1 ~~iPccp~~lKrLlivVvVvVlv 23 (35)
T 1spf_A 1 LRIPCCPVNLKRLLVVVVVVVLV 23 (35)
T ss_dssp CCCSSSCSHHHHHHHHHHHHHHH
T ss_pred CCCCccccchheEEEEEeeehhh
Confidence 5677776 666665555443
No 6
>2bsk_B Mitochondrial import inner membrane translocase subunit TIM10; protein transport, mitochondrial protein import, TIM complex; 3.3A {Homo sapiens} SCOP: g.83.1.1
Probab=27.51 E-value=1.3e+02 Score=20.10 Aligned_cols=33 Identities=18% Similarity=0.264 Sum_probs=28.6
Q ss_pred CCCHHHHHHHHHhHHHHHHHHHHHHHHHHHhhh
Q 042008 108 GLRPAEKAVIEDCNEEIDDCVDELRKASNVLDN 140 (208)
Q Consensus 108 ~~~~~~~~al~dC~ely~~a~~~L~~a~~~l~~ 140 (208)
.++..+..|+..|.+-|-++-..+.+.+..+..
T Consensus 42 ~L~~~E~~Ci~~Cv~Ky~d~~~~V~~~~~~~~~ 74 (90)
T 2bsk_B 42 ELSKGESVCLDRCVSKYLDIHERMGKKLTELSM 74 (90)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCChhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367889999999999999999999888877665
No 7
>2bsk_A Mitochondrial import inner membrane translocase subunit TIM9 A; protein transport, mitochondrial protein import, TIM complex; 3.3A {Homo sapiens} SCOP: g.83.1.1
Probab=26.44 E-value=1.4e+02 Score=19.95 Aligned_cols=32 Identities=13% Similarity=0.214 Sum_probs=28.3
Q ss_pred CCHHHHHHHHHhHHHHHHHHHHHHHHHHHhhh
Q 042008 109 LRPAEKAVIEDCNEEIDDCVDELRKASNVLDN 140 (208)
Q Consensus 109 ~~~~~~~al~dC~ely~~a~~~L~~a~~~l~~ 140 (208)
++..+..|+..|.+-|-++-..+.+.+..+..
T Consensus 41 L~~~E~~Ci~~Cv~Ky~d~~~~V~~~~~~~~~ 72 (89)
T 2bsk_A 41 VKPEETTCSEHCLQKYLKMTQRISMRFQEYHI 72 (89)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCchHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888999999999999999999888887764
No 8
>3dxr_A Mitochondrial import inner membrane translocase subunit TIM9; alpha-propeller, helix-turn-helix, intramolecular disulfides., chaperone; 2.50A {Saccharomyces cerevisiae}
Probab=25.85 E-value=1.3e+02 Score=20.02 Aligned_cols=32 Identities=16% Similarity=0.254 Sum_probs=27.9
Q ss_pred CCHHHHHHHHHhHHHHHHHHHHHHHHHHHhhh
Q 042008 109 LRPAEKAVIEDCNEEIDDCVDELRKASNVLDN 140 (208)
Q Consensus 109 ~~~~~~~al~dC~ely~~a~~~L~~a~~~l~~ 140 (208)
++..+..|+..|.+-|-++-..+.+.+..+..
T Consensus 50 L~~~E~~Ci~~Cv~Ky~~~~~~v~~~~~~~~~ 81 (89)
T 3dxr_A 50 LTNKEQTCIMKCSEKFLKHSERVGQRFQEQNA 81 (89)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCchHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788999999999999999999888877654
No 9
>3dxr_B Mitochondrial import inner membrane translocase subunit TIM10; alpha-propeller, helix-turn-helix, intramolecular disulfides., chaperone; 2.50A {Saccharomyces cerevisiae}
Probab=22.39 E-value=1.9e+02 Score=19.63 Aligned_cols=32 Identities=9% Similarity=0.214 Sum_probs=26.7
Q ss_pred CCHHHHHHHHHhHHHHHHHHHHHHHHHHHhhh
Q 042008 109 LRPAEKAVIEDCNEEIDDCVDELRKASNVLDN 140 (208)
Q Consensus 109 ~~~~~~~al~dC~ely~~a~~~L~~a~~~l~~ 140 (208)
++..+..|+..|.+-|-++-..+.+.+..+..
T Consensus 56 L~~~E~~Ci~~Cv~Ky~d~~~~V~~~~q~~~q 87 (95)
T 3dxr_B 56 LNKNESSCLDRCVAKYFETNVQVGENMQKMGQ 87 (95)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788999999999999999999888877654
No 10
>3cjh_A Mitochondrial import inner membrane translocase S TIM13; cyclic heterohexamer, chaperone, M binding, mitochondrion, protein transport; 2.60A {Saccharomyces cerevisiae}
Probab=17.23 E-value=1.1e+02 Score=19.01 Aligned_cols=32 Identities=16% Similarity=0.117 Sum_probs=26.9
Q ss_pred CCHHHHHHHHHhHHHHHHHHHHHHHHHHHhhh
Q 042008 109 LRPAEKAVIEDCNEEIDDCVDELRKASNVLDN 140 (208)
Q Consensus 109 ~~~~~~~al~dC~ely~~a~~~L~~a~~~l~~ 140 (208)
++..+..++..|.+-|-++-..+.+.+..+..
T Consensus 25 L~~~E~~Ci~~Cv~Ky~~~~~~v~~~~~~~~~ 56 (64)
T 3cjh_A 25 YATRNDACIDQCLAKYMRSWNVISKAYISRIQ 56 (64)
T ss_dssp CCSCCHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66778899999999999999999888776544
Done!