BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042009
(262 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1M6E|X Chain X, Crystal Structure Of Salicylic Acid Carboxyl
Methyltransferase (Samt)
Length = 359
Score = 207 bits (528), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 112/258 (43%), Positives = 155/258 (60%), Gaps = 26/258 (10%)
Query: 14 GRCYISGVAGSFYDRLFPDKXXXXXXXXXXXXXXXQVPPALESNATPAALNKGKIYISKS 73
G C+I+GV GSFY RLFP QVP +ESN KG IY++ +
Sbjct: 119 GVCFINGVPGSFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESN-------KGNIYMANT 171
Query: 74 SPQCVLDAYSLQFQNNFLIFLKSRAAEMVAGGRMVLSLMGRRSIDPTTEESCYQWELLAQ 133
PQ VL+AY QFQ + +FL+ RA E+V GGRMVL+++GRRS D + E C W+LLA
Sbjct: 172 CPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTILGRRSEDRASTECCLIWQLLAM 231
Query: 134 ALMSLVTERLIEEEKLDSFNAPYYAPCPEELKMAIQKEGSFIIDRLGHFEIDW------- 186
AL +V+E LIEEEK+D FN P Y P P E++ I KEGSF+ID + EI W
Sbjct: 232 ALNQMVSEGLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHIEASEIYWSSCTKDG 291
Query: 187 DGG--VEELTNTTLLPLSRGQRVAKTVRAVVESMFELHFGKAMMDLLFARYAEMVDDYLS 244
DGG VEE G VA+ +RAV E + HFG+A+++ +F RY ++ + +S
Sbjct: 292 DGGGSVEE----------EGYNVARCMRAVAEPLLLDHFGEAIIEDVFHRYKLLIIERMS 341
Query: 245 KNRAKYINLVISIIKKDN 262
K + K+IN+++S+I+K +
Sbjct: 342 KEKTKFINVIVSLIRKSD 359
>pdb|2EG5|A Chain A, The Structure Of Xanthosine Methyltransferase
pdb|2EG5|C Chain C, The Structure Of Xanthosine Methyltransferase
pdb|2EG5|E Chain E, The Structure Of Xanthosine Methyltransferase
pdb|2EG5|G Chain G, The Structure Of Xanthosine Methyltransferase
Length = 372
Score = 145 bits (365), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 96/267 (35%), Positives = 138/267 (51%), Gaps = 24/267 (8%)
Query: 1 FFKKQKQEKGIGFGRCYISGVAGSFYDRLFPDKXXXXXXXXXXXXXXXQVPPALESNATP 60
F++K ++E G G C I + GSFY RLFP++ QVP L +
Sbjct: 117 FYRKLEKENGRKIGSCLIGAMPGSFYSRLFPEESMHFLHSCYCLQWLSQVPSGLVTELG- 175
Query: 61 AALNKGKIYISKSSPQCVLDAYSLQFQNNFLIFLKSRAAEMVAGGRMVLS-------LMG 113
NKG IY SK+S V AY QF +F FL+ + E+ + GRM+L+ L
Sbjct: 176 IGTNKGSIYSSKASRLPVQKAYLDQFTKDFTTFLRIHSEELFSHGRMLLTCICKGVELDA 235
Query: 114 RRSIDPTTEESCYQWELLAQALMSLVTERLIEEEKLDSFNAPYYAPCPEELKMAIQKEGS 173
R +ID LL A+ LV E +EEEKLDSFN P Y P EE+K +++EGS
Sbjct: 236 RNAID-----------LLEMAINDLVVEGHLEEEKLDSFNLPVYIPSAEEVKCIVEEEGS 284
Query: 174 FIIDRLGHFEIDWDGGVEELTNTTLLPLSRGQRVAKTVRAVVESMFELHFGKAMMDLLFA 233
F I L F++ +D G + + + + + VA +VRAV E + HFG+A++ +F
Sbjct: 285 FEILYLETFKVLYDAGF-SIDDEHI----KAEYVASSVRAVYEPILASHFGEAIIPDIFH 339
Query: 234 RYAEMVDDYLSKNRAKYINLVISIIKK 260
R+A+ L + Y NL+IS+ KK
Sbjct: 340 RFAKHAAKVLPLGKGFYNNLIISLAKK 366
>pdb|2EFJ|A Chain A, The Structure Of 1,7 Dimethylxanthine Methyltransferase
Length = 384
Score = 138 bits (347), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 90/270 (33%), Positives = 138/270 (51%), Gaps = 17/270 (6%)
Query: 1 FFKKQKQEKGIGFGRCYISGVAGSFYDRLFPDKXXXXXXXXXXXXXXXQVPPALESNATP 60
F++ ++E G G C I + GSFY RLFP++ QVP L +
Sbjct: 116 FYRNLEKENGRKIGSCLIGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELG- 174
Query: 61 AALNKGKIYISKSSPQCVLDAYSLQFQNNFLIFLKSRAAEMVAGGRMVLSLMGRRS--ID 118
++NKG IY SK+S + AY QF +F FL+ + E+++ GRM+L+ + +
Sbjct: 175 ISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIHSEELISRGRMLLTFICKEDEFDH 234
Query: 119 PTTEESCYQWELLAQALMSLVTERLIEEEKLDSFNAPYYAPCPEELKMAIQKEGSFIIDR 178
P + +LL ++ LV E +EEEKLDSFN P YAP EE+K +++EGSF I
Sbjct: 235 PNS------MDLLEMSINDLVIEGHLEEEKLDSFNVPIYAPSTEEVKRIVEEEGSFEILY 288
Query: 179 LGHFEIDWDGGV---EELTNTTLLPLS-----RGQRVAKTVRAVVESMFELHFGKAMMDL 230
L F +D G ++ + P+S R VA VR++ E + HFG+A++
Sbjct: 289 LETFNAPYDAGFSIDDDYQGRSHSPVSCDEHARAAHVASVVRSIYEPILASHFGEAILPD 348
Query: 231 LFARYAEMVDDYLSKNRAKYINLVISIIKK 260
L R A+ L + Y +++IS+ KK
Sbjct: 349 LSHRIAKNAAKVLRSGKGFYDSVIISLAKK 378
>pdb|3B5I|A Chain A, Crystal Structure Of Indole-3-Acetic Acid
Methyltransferase
pdb|3B5I|B Chain B, Crystal Structure Of Indole-3-Acetic Acid
Methyltransferase
Length = 374
Score = 115 bits (289), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 73/220 (33%), Positives = 110/220 (50%), Gaps = 8/220 (3%)
Query: 17 YISGVAGSFYDRLFPDKXXXXXXXXXXXXXXXQVPPALESNATPAALNKGKIYISKSSPQ 76
+++GV GSFY RLFP + QVP ++ ++ AA N+G+++I + +
Sbjct: 133 FVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESV-TDRRSAAYNRGRVFIHGAGEK 191
Query: 77 CVLDAYSLQFQNNFLIFLKSRAAEMVAGGRMVLSLMGRRSIDPTTEESC--YQWELLAQA 134
AY QFQ + FL++RAAE+ GG M L +GR S+DPT + A
Sbjct: 192 TTT-AYKRQFQADLAEFLRARAAEVKRGGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQDA 250
Query: 135 LMSLVTERLIEEEKLDSFNAPYYAPCPEELKMAIQKEGSFIIDRLGHFEIDWDGGVEELT 194
LV E L+ EK D FN P YAP ++ K + GSF ID+L + + GG +
Sbjct: 251 WDDLVREGLVAAEKRDGFNIPVYAPSLQDFKEVVDANGSFAIDKL----VVYKGGSPLVV 306
Query: 195 NTTLLPLSRGQRVAKTVRAVVESMFELHFGKAMMDLLFAR 234
N G+ A + R+V + E H G+ + + LF+R
Sbjct: 307 NEPDDASEVGRAFASSCRSVAGVLVEAHIGEELSNKLFSR 346
>pdb|4ADB|A Chain A, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADB|B Chain B, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADB|C Chain C, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADB|D Chain D, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADC|A Chain A, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADC|B Chain B, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADC|C Chain C, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADC|D Chain D, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADD|A Chain A, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADD|B Chain B, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADD|C Chain C, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADD|D Chain D, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADE|A Chain A, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADE|B Chain B, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
Length = 406
Score = 32.0 bits (71), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Query: 144 IEEEKLDSFNAPYYAPCPEELKMAIQKEGSFIIDRLGHFEIDWDGGV 190
I E D + P YAP P + ++ EGS + D+ G ID+ GG+
Sbjct: 5 ITRENFDEWMIPVYAPAP---FIPVRGEGSRLWDQQGKEYIDFAGGI 48
>pdb|2V1N|A Chain A, Solution Structure Of The Region 51-160 Of Human Kin17
Reveals A Winged Helix Fold
Length = 111
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 47/108 (43%), Gaps = 7/108 (6%)
Query: 67 KIYISKSSPQCVLDAYSLQFQNNFLIFLKSRAAEMVAGGRMVLS--LMGRRSIDPTTEES 124
++ ++ +PQ +D +S +F+N+FL L+ R +V + + R I +
Sbjct: 4 QLLLASENPQQFMDYFSEEFRNDFLELLRRRFGTKRVHNNIVYNEYISHREHIHM----N 59
Query: 125 CYQWELLAQALMSLVTERLIE-EEKLDSFNAPYYAPCPEELKMAIQKE 171
QWE L L E L + +E + Y PE ++ ++ E
Sbjct: 60 ATQWETLTDFTKWLGREGLCKVDETPKGWYIQYIDRDPETIRRQLELE 107
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,753,829
Number of Sequences: 62578
Number of extensions: 236179
Number of successful extensions: 564
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 548
Number of HSP's gapped (non-prelim): 6
length of query: 262
length of database: 14,973,337
effective HSP length: 97
effective length of query: 165
effective length of database: 8,903,271
effective search space: 1469039715
effective search space used: 1469039715
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)