Query 042009
Match_columns 262
No_of_seqs 130 out of 442
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 13:03:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042009.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042009hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03492 Methyltransf_7: SAM d 100.0 2.1E-78 4.5E-83 563.4 24.8 246 13-260 86-334 (334)
2 PLN02668 indole-3-acetate carb 100.0 3.4E-77 7.3E-82 560.9 26.9 239 14-258 142-384 (386)
3 PRK14103 trans-aconitate 2-met 97.9 0.00035 7.5E-09 62.5 14.5 148 27-243 82-232 (255)
4 PRK01683 trans-aconitate 2-met 97.8 0.00033 7.1E-09 62.4 12.4 166 28-261 87-258 (258)
5 TIGR02072 BioC biotin biosynth 96.6 0.013 2.8E-07 50.6 8.6 91 23-182 87-177 (240)
6 PLN02233 ubiquinone biosynthes 96.5 0.018 3.9E-07 51.9 9.1 102 29-179 140-246 (261)
7 PLN02336 phosphoethanolamine N 96.4 0.11 2.4E-06 50.6 14.9 140 21-242 319-460 (475)
8 TIGR02752 MenG_heptapren 2-hep 96.4 0.012 2.6E-07 51.3 7.4 115 21-182 101-219 (231)
9 PRK08317 hypothetical protein; 96.3 0.38 8.2E-06 41.2 16.2 104 24-185 77-180 (241)
10 TIGR00740 methyltransferase, p 96.2 0.041 9E-07 48.5 9.8 106 21-175 111-221 (239)
11 PTZ00098 phosphoethanolamine N 96.1 0.13 2.9E-06 46.3 12.8 143 21-240 104-246 (263)
12 PF13489 Methyltransf_23: Meth 96.0 0.0085 1.9E-07 48.5 4.0 90 27-178 71-160 (161)
13 COG2226 UbiE Methylase involve 96.0 0.01 2.2E-07 53.3 4.7 114 18-178 103-221 (238)
14 PLN02232 ubiquinone biosynthes 95.9 0.042 9.2E-07 45.8 7.8 108 23-178 33-144 (160)
15 PRK15068 tRNA mo(5)U34 methylt 95.8 0.052 1.1E-06 50.6 8.9 62 98-181 213-274 (322)
16 PRK11036 putative S-adenosyl-L 95.8 0.063 1.4E-06 47.9 9.0 102 30-183 108-209 (255)
17 PLN02244 tocopherol O-methyltr 95.6 0.18 3.8E-06 47.3 11.6 103 23-180 175-277 (340)
18 PRK10258 biotin biosynthesis p 95.6 0.014 3E-07 51.8 3.9 98 24-185 93-190 (251)
19 PF08241 Methyltransf_11: Meth 95.4 0.025 5.3E-07 41.3 4.3 28 20-47 46-73 (95)
20 TIGR00452 methyltransferase, p 95.3 0.084 1.8E-06 49.3 8.4 90 29-180 183-272 (314)
21 PRK00216 ubiE ubiquinone/menaq 95.3 0.19 4E-06 43.4 9.9 114 23-183 110-227 (239)
22 TIGR01934 MenG_MenH_UbiE ubiqu 94.9 0.25 5.4E-06 42.2 9.6 113 23-182 95-211 (223)
23 PF01209 Ubie_methyltran: ubiE 94.6 0.039 8.5E-07 49.2 3.9 111 23-180 105-219 (233)
24 KOG2940 Predicted methyltransf 94.0 0.02 4.3E-07 51.5 0.8 95 24-180 129-226 (325)
25 KOG1540 Ubiquinone biosynthesi 93.3 0.17 3.8E-06 46.1 5.5 102 30-178 173-278 (296)
26 PLN02396 hexaprenyldihydroxybe 93.0 0.48 1E-05 44.3 8.3 103 23-182 187-290 (322)
27 PRK15451 tRNA cmo(5)U34 methyl 92.5 0.78 1.7E-05 40.8 8.7 70 98-175 151-224 (247)
28 KOG3010 Methyltransferase [Gen 92.0 1.1 2.4E-05 40.5 8.8 37 205-241 205-242 (261)
29 PLN02490 MPBQ/MSBQ methyltrans 91.7 0.42 9E-06 45.2 6.1 94 21-183 165-258 (340)
30 smart00828 PKS_MT Methyltransf 91.4 1.2 2.7E-05 38.3 8.4 28 155-183 119-146 (224)
31 COG4106 Tam Trans-aconitate me 91.3 1.4 3E-05 39.5 8.5 165 27-260 85-256 (257)
32 PRK11207 tellurite resistance 91.2 1.4 3.1E-05 37.7 8.5 17 32-48 93-109 (197)
33 TIGR02081 metW methionine bios 90.0 1.1 2.5E-05 38.1 6.8 26 156-182 143-168 (194)
34 TIGR00477 tehB tellurite resis 90.0 2.1 4.6E-05 36.6 8.5 22 156-180 147-168 (195)
35 PRK06922 hypothetical protein; 89.9 0.48 1E-05 48.5 5.0 54 29-110 482-536 (677)
36 PRK11705 cyclopropane fatty ac 89.8 11 0.00023 36.1 13.9 67 90-182 246-313 (383)
37 PF02353 CMAS: Mycolic acid cy 88.6 8.9 0.00019 35.0 12.0 75 88-182 143-218 (273)
38 PRK12335 tellurite resistance 87.8 2.8 6E-05 38.2 8.2 76 32-180 182-258 (287)
39 PRK06202 hypothetical protein; 86.4 4.4 9.5E-05 35.4 8.4 28 156-185 199-226 (232)
40 COG2230 Cfa Cyclopropane fatty 84.6 33 0.00072 31.7 13.4 119 80-244 145-267 (283)
41 PLN02336 phosphoethanolamine N 82.6 1.6 3.4E-05 42.5 4.1 43 30-110 99-141 (475)
42 PF03141 Methyltransf_29: Puta 80.9 2.1 4.6E-05 42.4 4.3 21 29-49 176-197 (506)
43 PF08242 Methyltransf_12: Meth 79.7 1.8 4E-05 32.2 2.8 15 33-47 65-79 (99)
44 KOG1270 Methyltransferases [Co 78.0 4.5 9.7E-05 37.1 5.2 77 87-179 171-247 (282)
45 TIGR02716 C20_methyl_CrtF C-20 75.8 28 0.00061 31.7 10.0 26 18-45 201-226 (306)
46 KOG1331 Predicted methyltransf 74.2 2.2 4.7E-05 39.5 2.1 55 28-119 97-151 (293)
47 PRK05134 bifunctional 3-demeth 73.1 16 0.00034 31.7 7.3 75 91-181 131-205 (233)
48 PRK11188 rrmJ 23S rRNA methylt 72.7 11 0.00024 32.7 6.2 55 30-113 113-167 (209)
49 PRK11873 arsM arsenite S-adeno 70.5 3.1 6.6E-05 37.2 2.2 26 22-47 134-159 (272)
50 smart00138 MeTrc Methyltransfe 69.9 6 0.00013 35.7 4.0 21 29-49 198-218 (264)
51 KOG1541 Predicted protein carb 68.2 11 0.00023 34.1 5.1 59 27-114 105-163 (270)
52 KOG0451 Predicted 2-oxoglutara 67.7 12 0.00026 37.9 5.8 72 68-152 390-475 (913)
53 cd08788 CARD_NOD2_2_CARD15 Cas 65.7 7.1 0.00015 29.3 2.9 42 127-169 12-53 (81)
54 PRK00121 trmB tRNA (guanine-N( 64.9 34 0.00074 29.3 7.6 75 26-146 103-177 (202)
55 COG4123 Predicted O-methyltran 63.9 14 0.00031 33.4 5.1 38 75-112 134-171 (248)
56 TIGR01983 UbiG ubiquinone bios 63.8 49 0.0011 28.1 8.4 80 88-183 126-205 (224)
57 PF05891 Methyltransf_PK: AdoM 63.6 7.8 0.00017 34.4 3.3 96 12-181 104-201 (218)
58 PF06080 DUF938: Protein of un 63.0 42 0.00091 29.5 7.8 59 96-172 126-184 (204)
59 PF02268 TFIIA_gamma_N: Transc 62.1 7.4 0.00016 26.5 2.2 22 127-148 11-32 (49)
60 PRK07580 Mg-protoporphyrin IX 60.9 41 0.0009 28.7 7.4 30 153-183 187-216 (230)
61 PF02167 Cytochrom_C1: Cytochr 59.8 11 0.00024 33.5 3.6 49 21-96 133-181 (219)
62 TIGR00091 tRNA (guanine-N(7)-) 59.3 75 0.0016 26.9 8.7 21 27-47 80-100 (194)
63 PRK10079 phosphonate metabolis 57.7 12 0.00026 32.9 3.5 54 84-151 15-72 (241)
64 PF08003 Methyltransf_9: Prote 56.2 31 0.00068 32.3 6.0 56 98-175 206-261 (315)
65 PF03962 Mnd1: Mnd1 family; I 55.7 7.4 0.00016 33.7 1.8 35 128-162 29-63 (188)
66 COG5124 Protein predicted to b 55.7 7 0.00015 33.8 1.6 36 126-161 40-75 (209)
67 PF09851 SHOCT: Short C-termin 55.6 9.2 0.0002 23.2 1.7 19 133-151 6-24 (31)
68 COG2242 CobL Precorrin-6B meth 55.5 44 0.00095 29.1 6.5 48 67-143 105-153 (187)
69 PF12847 Methyltransf_18: Meth 55.4 11 0.00025 28.2 2.6 23 89-111 89-111 (112)
70 PF01234 NNMT_PNMT_TEMT: NNMT/ 54.5 26 0.00055 31.9 5.1 54 97-180 185-238 (256)
71 PF05401 NodS: Nodulation prot 52.9 20 0.00044 31.4 4.0 54 17-112 94-147 (201)
72 PF00891 Methyltransf_2: O-met 52.2 37 0.0008 29.6 5.7 57 19-117 146-205 (241)
73 TIGR02469 CbiT precorrin-6Y C5 51.1 19 0.00042 27.2 3.3 23 90-112 101-123 (124)
74 PRK11088 rrmA 23S rRNA methylt 49.6 16 0.00036 32.7 3.1 16 99-114 169-184 (272)
75 TIGR00730 conserved hypothetic 48.7 28 0.0006 29.7 4.2 42 126-170 136-177 (178)
76 COG2518 Pcm Protein-L-isoaspar 47.1 21 0.00045 31.5 3.2 49 35-112 122-170 (209)
77 TIGR02404 trehalos_R_Bsub treh 46.1 22 0.00048 30.9 3.3 54 85-151 4-61 (233)
78 PF05724 TPMT: Thiopurine S-me 45.9 75 0.0016 27.9 6.6 63 75-183 130-192 (218)
79 cd02440 AdoMet_MTases S-adenos 45.9 51 0.0011 22.8 4.8 19 92-110 85-103 (107)
80 TIGR02018 his_ut_repres histid 45.6 25 0.00055 30.6 3.6 54 85-151 5-62 (230)
81 PRK05785 hypothetical protein; 45.4 7.5 0.00016 34.2 0.2 27 23-49 99-125 (226)
82 PF14904 FAM86: Family of unkn 42.4 23 0.00049 27.7 2.4 31 208-238 67-99 (100)
83 PF02375 JmjN: jmjN domain; I 41.7 9.3 0.0002 23.9 0.1 15 155-169 1-15 (34)
84 TIGR00537 hemK_rel_arch HemK-r 41.5 1.1E+02 0.0024 25.3 6.7 73 21-114 71-143 (179)
85 TIGR02325 C_P_lyase_phnF phosp 41.0 31 0.00066 30.0 3.4 53 84-149 11-67 (238)
86 KOG1661 Protein-L-isoaspartate 40.7 25 0.00054 31.4 2.7 30 67-112 165-194 (237)
87 TIGR03840 TMPT_Se_Te thiopurin 40.3 1.7E+02 0.0036 25.5 7.9 59 92-185 133-191 (213)
88 PRK14999 histidine utilization 38.8 34 0.00074 30.0 3.4 53 84-149 15-71 (241)
89 PF03641 Lysine_decarbox: Poss 38.7 36 0.00077 27.4 3.2 39 127-168 95-133 (133)
90 PRK00312 pcm protein-L-isoaspa 37.6 42 0.00092 28.7 3.7 14 99-112 163-176 (212)
91 TIGR00138 gidB 16S rRNA methyl 37.0 60 0.0013 27.4 4.5 52 91-155 122-173 (181)
92 PF10357 Kin17_mid: Domain of 36.8 43 0.00093 27.3 3.3 25 75-99 10-34 (127)
93 PRK04266 fibrillarin; Provisio 36.7 96 0.0021 27.3 5.9 22 94-115 159-180 (226)
94 PF07021 MetW: Methionine bios 35.6 1.4E+02 0.0029 26.2 6.4 96 29-185 70-171 (193)
95 KOG3463 Transcription initiati 35.2 33 0.00072 27.1 2.3 54 128-183 13-67 (109)
96 PF13847 Methyltransf_31: Meth 35.0 44 0.00096 26.8 3.2 19 30-49 70-88 (152)
97 KOG2361 Predicted methyltransf 34.8 1.3E+02 0.0028 27.5 6.3 68 98-182 170-238 (264)
98 PF03291 Pox_MCEL: mRNA cappin 34.1 54 0.0012 30.8 4.0 48 29-112 138-187 (331)
99 KOG3433 Protein involved in me 33.9 25 0.00055 30.5 1.6 37 126-162 39-75 (203)
100 PRK14121 tRNA (guanine-N(7)-)- 33.7 97 0.0021 29.9 5.8 34 13-46 171-204 (390)
101 PRK13942 protein-L-isoaspartat 33.7 58 0.0013 28.1 4.0 12 100-111 165-176 (212)
102 PRK08287 cobalt-precorrin-6Y C 33.2 77 0.0017 26.4 4.5 21 92-112 112-132 (187)
103 PRK09764 DNA-binding transcrip 32.6 49 0.0011 29.0 3.4 52 84-148 8-63 (240)
104 PF09597 IGR: IGR protein moti 32.0 43 0.00094 23.4 2.3 27 80-106 13-39 (57)
105 COG2188 PhnF Transcriptional r 31.7 56 0.0012 28.8 3.5 75 85-172 11-94 (236)
106 PF06859 Bin3: Bicoid-interact 31.7 40 0.00086 26.8 2.3 26 86-111 19-44 (110)
107 smart00545 JmjN Small domain f 31.6 26 0.00057 22.9 1.1 16 154-169 2-17 (42)
108 PF04672 Methyltransf_19: S-ad 29.9 1.2E+02 0.0026 27.9 5.4 70 98-191 177-247 (267)
109 PRK13255 thiopurine S-methyltr 29.9 2.8E+02 0.0062 24.1 7.7 28 155-184 166-193 (218)
110 KOG3052 Cytochrome c1 [Energy 29.8 85 0.0019 28.8 4.3 51 21-98 213-263 (311)
111 PF06256 Nucleo_LEF-12: Nucleo 29.6 57 0.0012 28.2 3.1 31 124-154 12-42 (185)
112 TIGR03438 probable methyltrans 29.6 1.4E+02 0.003 27.3 5.9 27 90-116 156-182 (301)
113 PRK09489 rsmC 16S ribosomal RN 29.2 1.2E+02 0.0025 28.6 5.4 54 22-112 251-304 (342)
114 PRK13944 protein-L-isoaspartat 28.9 69 0.0015 27.4 3.6 14 99-112 161-174 (205)
115 PF01555 N6_N4_Mtase: DNA meth 28.6 28 0.00061 29.2 1.1 27 88-114 29-59 (231)
116 PRK14967 putative methyltransf 28.0 2.1E+02 0.0045 24.7 6.5 69 89-173 137-205 (223)
117 PRK11402 DNA-binding transcrip 27.9 67 0.0014 28.1 3.4 51 85-148 13-67 (241)
118 PRK11524 putative methyltransf 27.1 1.3E+02 0.0028 27.2 5.2 22 90-111 59-80 (284)
119 KOG4300 Predicted methyltransf 26.1 89 0.0019 28.1 3.7 71 95-185 166-236 (252)
120 COG2821 MltA Membrane-bound ly 26.1 74 0.0016 30.6 3.4 60 101-175 201-264 (373)
121 PF03848 TehB: Tellurite resis 25.9 98 0.0021 26.9 4.0 20 29-49 90-109 (192)
122 PF08714 Fae: Formaldehyde-act 25.9 58 0.0013 27.6 2.4 24 129-152 81-104 (159)
123 PRK00377 cbiT cobalt-precorrin 25.5 1.4E+02 0.003 25.2 4.9 19 92-110 126-144 (198)
124 PF10925 DUF2680: Protein of u 25.5 73 0.0016 22.3 2.5 27 126-152 15-41 (59)
125 TIGR03126 one_C_fae formaldehy 25.5 54 0.0012 27.8 2.2 24 129-152 83-106 (160)
126 PRK00050 16S rRNA m(4)C1402 me 25.2 1.7E+02 0.0037 27.1 5.7 29 84-112 209-237 (296)
127 TIGR02124 hypE hydrogenase exp 25.1 2.4E+02 0.0052 25.9 6.7 42 127-169 54-95 (320)
128 PF13649 Methyltransf_25: Meth 24.5 44 0.00096 24.7 1.4 20 30-49 63-83 (101)
129 PF13260 DUF4051: Protein of u 24.4 1.2E+02 0.0026 20.6 3.2 27 79-105 22-48 (54)
130 PRK10611 chemotaxis methyltran 24.3 55 0.0012 30.2 2.2 16 98-116 249-264 (287)
131 TIGR00438 rrmJ cell division p 24.2 2.3E+02 0.005 23.5 5.9 24 88-111 123-146 (188)
132 PRK00107 gidB 16S rRNA methylt 23.9 79 0.0017 27.0 3.0 24 89-112 123-146 (187)
133 PF09119 SicP-binding: SicP bi 23.6 28 0.0006 26.2 0.1 45 37-101 3-51 (81)
134 PRK01099 rpoK DNA-directed RNA 23.3 2E+02 0.0044 20.3 4.5 45 89-147 11-55 (62)
135 PF09612 HtrL_YibB: Bacterial 23.0 1.5E+02 0.0033 27.2 4.8 42 97-148 190-231 (271)
136 PRK13699 putative methylase; P 23.0 1.6E+02 0.0034 26.0 4.8 19 92-110 53-71 (227)
137 cd01671 CARD Caspase activatio 22.4 1.2E+02 0.0025 21.6 3.3 38 130-169 14-51 (80)
138 KOG4068 Uncharacterized conser 22.3 97 0.0021 26.4 3.1 42 128-169 68-109 (174)
139 PF01135 PCMT: Protein-L-isoas 22.1 71 0.0015 27.9 2.4 31 67-113 144-174 (209)
140 PF00619 CARD: Caspase recruit 22.1 1.1E+02 0.0023 22.0 3.0 25 130-154 17-41 (85)
141 PF00586 AIRS: AIR synthase re 21.6 99 0.0021 22.9 2.8 66 103-169 11-78 (96)
142 cd08325 CARD_CASP1-like Caspas 21.5 74 0.0016 23.6 2.1 26 128-153 15-40 (83)
143 cd05721 IgV_CTLA-4 Immunoglobu 21.1 54 0.0012 26.3 1.3 26 29-54 10-43 (115)
144 PF13794 MiaE_2: tRNA-(MS[2]IO 20.7 83 0.0018 27.3 2.5 28 212-239 87-114 (185)
145 PF15579 Imm32: Immunity prote 20.7 4.1E+02 0.0089 20.8 6.1 36 12-55 10-47 (102)
No 1
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=100.00 E-value=2.1e-78 Score=563.44 Aligned_cols=246 Identities=49% Similarity=0.831 Sum_probs=209.0
Q ss_pred CCceEEeeccCccccccCCCCccceEEcccccccccCCCccccCCCCccccCCCceeecCCCcHHHHHHHHHHHHHHHHH
Q 042009 13 FGRCYISGVAGSFYDRLFPDKSLHFVHSSSSLHWLSQVPPALESNATPAALNKGKIYISKSSPQCVLDAYSLQFQNNFLI 92 (262)
Q Consensus 13 ~~~~f~~~vpgSFY~rlfP~~Svh~~~Ss~alHWLS~~P~~~~~~~~s~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~ 92 (262)
.++||++|||||||+||||++||||+||++||||||++|+++.+++ |++||||+||++++++++|.+||++||++||.+
T Consensus 86 ~~~~f~~gvpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~-~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~ 164 (334)
T PF03492_consen 86 FRNYFVSGVPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKS-SPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSS 164 (334)
T ss_dssp TTSEEEEEEES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTT-STTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHH
T ss_pred CceEEEEecCchhhhccCCCCceEEEEEechhhhcccCCccccccc-ccccccCcEEEecCCCHHHHHHHHHHHHHHHHH
Confidence 5689999999999999999999999999999999999999999977 599999999999999999999999999999999
Q ss_pred HHHHHHHhhccCceEEEEecccCCCCCCCchhhHHHHHHHHHHHHHHHhccCChhhhcccccCcccCCHHHHHHHHhcCC
Q 042009 93 FLKSRAAEMVAGGRMVLSLMGRRSIDPTTEESCYQWELLAQALMSLVTERLIEEEKLDSFNAPYYAPCPEELKMAIQKEG 172 (262)
Q Consensus 93 FL~~Ra~EL~~GG~mvl~~~g~~~~~~~~~~~~~~~~~l~~al~dmv~eGli~~e~~dsfn~P~y~ps~~Ev~~~ie~~g 172 (262)
||++||+||+|||+|||+++||++.++...+.+.+|++|+++|+|||.||+|++||+|+||+|+|+||++||+++|+++|
T Consensus 165 FL~~Ra~ELv~GG~mvl~~~gr~~~~~~~~~~~~~~~~l~~~l~dMv~eGlI~~ek~dsfniP~Y~ps~eEv~~~I~~~g 244 (334)
T PF03492_consen 165 FLKARAEELVPGGRMVLTFLGRDEEDPSSTGSCMLWDLLADALRDMVAEGLISEEKVDSFNIPIYFPSPEEVRAIIEEEG 244 (334)
T ss_dssp HHHHHHHHEEEEEEEEEEEEE-STSSTTSTTCCCHHHHHHHHHHHHHHTTSS-HCCCCTG--SBB---HHHHHHHHHHHT
T ss_pred HHHHhhheeccCcEEEEEEeeccccccccCCcchHHHHHHHHHHHHHHcCCcCHHHhhceeCCccCCCHHHHHHHHhcCC
Confidence 99999999999999999999999977766666789999999999999999999999999999999999999999999999
Q ss_pred ceEEEEEEeEeecCCCCcccccccccccchhHHHHHhhhhhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhcC---Cc
Q 042009 173 SFIIDRLGHFEIDWDGGVEELTNTTLLPLSRGQRVAKTVRAVVESMFELHFGKAMMDLLFARYAEMVDDYLSKNR---AK 249 (262)
Q Consensus 173 sF~I~~le~~~~~w~~~~~~~~~d~~~~~~~a~~~a~~~RA~~ep~l~~hfge~I~delF~r~~~~v~~~~~~~~---~~ 249 (262)
+|+|+++|+++.+|...+...... .+...+|+.+++++|||+||+|++|||++|||+||+||+++++++++.+. ++
T Consensus 245 sF~I~~le~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~iRA~~e~~l~~hfG~ei~D~LF~r~~~~v~~~~~~~~~~~~~ 323 (334)
T PF03492_consen 245 SFEIEKLELFEQPWWSVPDDESWK-EDAKEYARNVANYIRAVFEPLLKAHFGEEIMDELFERYAKKVAEHLEKEKSRNMK 323 (334)
T ss_dssp SEEEEEEEEEEEETCCTCTTT-ST-TTHHCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHTHTT-BE
T ss_pred CEEEEEEEEEeecccccchhhhcc-cchhhhHHHHHHhHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhccCCC
Confidence 999999999997754433211100 12367999999999999999999999999999999999999999998765 88
Q ss_pred eEEEEEEEEec
Q 042009 250 YINLVISIIKK 260 (262)
Q Consensus 250 ~~~~~v~L~r~ 260 (262)
+++++++|+||
T Consensus 324 ~~~i~~~L~Rk 334 (334)
T PF03492_consen 324 FVNIVVSLTRK 334 (334)
T ss_dssp EEEEEEEEEE-
T ss_pred cEEEEEEEeeC
Confidence 99999999997
No 2
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=100.00 E-value=3.4e-77 Score=560.90 Aligned_cols=239 Identities=36% Similarity=0.605 Sum_probs=222.2
Q ss_pred CceEEeeccCccccccCCCCccceEEcccccccccCCCccccCCCCccccCCCceeecCCCcHHHHHHHHHHHHHHHHHH
Q 042009 14 GRCYISGVAGSFYDRLFPDKSLHFVHSSSSLHWLSQVPPALESNATPAALNKGKIYISKSSPQCVLDAYSLQFQNNFLIF 93 (262)
Q Consensus 14 ~~~f~~~vpgSFY~rlfP~~Svh~~~Ss~alHWLS~~P~~~~~~~~s~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~F 93 (262)
.+||++|||||||+||||++||||+||+||||||||+|+++.|.+ |++||||+||+++++ +.|.+||++||++||..|
T Consensus 142 ~~~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~-s~~~Nkg~iyi~~~s-~~v~~aY~~Qf~~D~~~F 219 (386)
T PLN02668 142 RSYFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKR-SAAYNKGRVFIHGAS-ESTANAYKRQFQADLAGF 219 (386)
T ss_pred CceEEEecCccccccccCCCceEEEEeeccceecccCchhhccCC-cccccCCceEecCCC-HHHHHHHHHHHHHHHHHH
Confidence 369999999999999999999999999999999999999998765 589999999999887 779999999999999999
Q ss_pred HHHHHHhhccCceEEEEecccCCCCCCCch-hhHHHHH-HHHHHHHHHHhccCChhhhcccccCcccCCHHHHHHHHhcC
Q 042009 94 LKSRAAEMVAGGRMVLSLMGRRSIDPTTEE-SCYQWEL-LAQALMSLVTERLIEEEKLDSFNAPYYAPCPEELKMAIQKE 171 (262)
Q Consensus 94 L~~Ra~EL~~GG~mvl~~~g~~~~~~~~~~-~~~~~~~-l~~al~dmv~eGli~~e~~dsfn~P~y~ps~~Ev~~~ie~~ 171 (262)
|++||+||+|||+||++++||++.++..++ .+.+|++ ++++|+|||.||+|++||+|+||+|+|+||++||+++|+++
T Consensus 220 L~~Ra~ELvpGG~mvl~~~Gr~~~~~~~~~~~~~~~~~~l~~al~dlv~eGlI~eek~dsFniP~Y~ps~eEv~~~Ie~~ 299 (386)
T PLN02668 220 LRARAQEMKRGGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVQEGLVTSEKRDSFNIPVYAPSLQDFKEVVEAN 299 (386)
T ss_pred HHHHHHHhccCcEEEEEEecCCCCCcccCCchhHHHHHHHHHHHHHHHHcCCCCHHHHhcccCcccCCCHHHHHHHHhhc
Confidence 999999999999999999999988877665 5667887 99999999999999999999999999999999999999999
Q ss_pred CceEEEEEEeEeecCCCCcccccccccccchhHHHHHhhhhhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHhh--cCCc
Q 042009 172 GSFIIDRLGHFEIDWDGGVEELTNTTLLPLSRGQRVAKTVRAVVESMFELHFGKAMMDLLFARYAEMVDDYLSK--NRAK 249 (262)
Q Consensus 172 gsF~I~~le~~~~~w~~~~~~~~~d~~~~~~~a~~~a~~~RA~~ep~l~~hfge~I~delF~r~~~~v~~~~~~--~~~~ 249 (262)
|+|+|+++|+++..|+++++.. .| ....|+++|+++||++||+|++|||++|+|+||+||+++++++++. ++++
T Consensus 300 gsF~I~~le~~~~~~~~~~~~~-~d---~~~~g~~~a~~~RA~~E~ll~~HFG~~i~D~lF~r~~~~v~~~~~~~~~~~~ 375 (386)
T PLN02668 300 GSFAIDKLEVFKGGSPLVVNEP-DD---AAEVGRAMANSCRSVAGVLVDAHIGEELSNELFLRVERRATSHAKELLEKLQ 375 (386)
T ss_pred CCEEeeeeEEeeccCcccccCc-cc---HHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhcccCc
Confidence 9999999999999998766432 23 2568899999999999999999999999999999999999999998 8889
Q ss_pred eEEEEEEEE
Q 042009 250 YINLVISII 258 (262)
Q Consensus 250 ~~~~~v~L~ 258 (262)
+++++++|.
T Consensus 376 ~~~~~~sL~ 384 (386)
T PLN02668 376 FFHIVASLS 384 (386)
T ss_pred eEEEEEEEe
Confidence 999999986
No 3
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=97.93 E-value=0.00035 Score=62.46 Aligned_cols=148 Identities=14% Similarity=0.186 Sum_probs=86.1
Q ss_pred cccCCCCccceEEcccccccccCCCccccCCCCccccCCCceeecCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhccCce
Q 042009 27 DRLFPDKSLHFVHSSSSLHWLSQVPPALESNATPAALNKGKIYISKSSPQCVLDAYSLQFQNNFLIFLKSRAAEMVAGGR 106 (262)
Q Consensus 27 ~rlfP~~Svh~~~Ss~alHWLS~~P~~~~~~~~s~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~ 106 (262)
..+.|++++|+++|+.+|||+.. |.. + |+.=.+-|+|||+
T Consensus 82 ~~~~~~~~fD~v~~~~~l~~~~d-~~~------------------------~---------------l~~~~~~LkpgG~ 121 (255)
T PRK14103 82 RDWKPKPDTDVVVSNAALQWVPE-HAD------------------------L---------------LVRWVDELAPGSW 121 (255)
T ss_pred hhCCCCCCceEEEEehhhhhCCC-HHH------------------------H---------------HHHHHHhCCCCcE
Confidence 35667899999999999999753 111 1 1111567999999
Q ss_pred EEEEecccCCCCCCCchhhHHHHHHH--HHHHHHHHhccCChhhhcccccCcccCCHHHHHHHHhcCCceEEEEEEeEee
Q 042009 107 MVLSLMGRRSIDPTTEESCYQWELLA--QALMSLVTERLIEEEKLDSFNAPYYAPCPEELKMAIQKEGSFIIDRLGHFEI 184 (262)
Q Consensus 107 mvl~~~g~~~~~~~~~~~~~~~~~l~--~al~dmv~eGli~~e~~dsfn~P~y~ps~~Ev~~~ie~~gsF~I~~le~~~~ 184 (262)
+++++.+.... + .......+. ..|..... + ..+..+....+++++...+++.| |++...+....
T Consensus 122 l~~~~~~~~~~-~----~~~~~~~~~~~~~w~~~~~-~-------~~~~~~~~~~~~~~~~~~l~~aG-f~v~~~~~~~~ 187 (255)
T PRK14103 122 IAVQVPGNFDA-P----SHAAVRALARREPWAKLLR-D-------IPFRVGAVVQTPAGYAELLTDAG-CKVDAWETTYV 187 (255)
T ss_pred EEEEcCCCcCC-h----hHHHHHHHhccCchhHHhc-c-------cccccCcCCCCHHHHHHHHHhCC-CeEEEEeeeee
Confidence 99987653210 1 011111111 12322110 0 01233456779999999999999 88765554221
Q ss_pred cCCCCcccccccccccchhHHHHHhhhhhh-hhhHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 042009 185 DWDGGVEELTNTTLLPLSRGQRVAKTVRAV-VESMFELHFGKAMMDLLFARYAEMVDDYL 243 (262)
Q Consensus 185 ~w~~~~~~~~~d~~~~~~~a~~~a~~~RA~-~ep~l~~hfge~I~delF~r~~~~v~~~~ 243 (262)
. +.. ....+..++++. +.+++ +.++++-.+++-+.+.+.+.+..
T Consensus 188 ~--~~~------------~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~l~~~~ 232 (255)
T PRK14103 188 H--QLT------------GEDPVLDWITGTALRPVR-ERLSDDSWEQFRAELIPLLREAY 232 (255)
T ss_pred e--eCC------------Cchhhhhhhhccchhhhh-hhCCHHHHHHHHHHHHHHHHHHC
Confidence 1 111 111234445533 34444 48888888888888888888774
No 4
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=97.82 E-value=0.00033 Score=62.43 Aligned_cols=166 Identities=13% Similarity=0.149 Sum_probs=94.1
Q ss_pred ccCCCCccceEEcccccccccCCCccccCCCCccccCCCceeecCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhccCceE
Q 042009 28 RLFPDKSLHFVHSSSSLHWLSQVPPALESNATPAALNKGKIYISKSSPQCVLDAYSLQFQNNFLIFLKSRAAEMVAGGRM 107 (262)
Q Consensus 28 rlfP~~Svh~~~Ss~alHWLS~~P~~~~~~~~s~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~m 107 (262)
.+.|++++|+++|+.++||+.. +. .+|+.=.+-|+|||.+
T Consensus 87 ~~~~~~~fD~v~~~~~l~~~~d-~~---------------------------------------~~l~~~~~~LkpgG~~ 126 (258)
T PRK01683 87 SWQPPQALDLIFANASLQWLPD-HL---------------------------------------ELFPRLVSLLAPGGVL 126 (258)
T ss_pred ccCCCCCccEEEEccChhhCCC-HH---------------------------------------HHHHHHHHhcCCCcEE
Confidence 4467789999999999999643 10 1122235679999999
Q ss_pred EEEecccCCCCCCCchhhHHHHHHHHHHHHHHHhccCChhhhcccccCcccCCHHHHHHHHhcCCceEEEEEEeEeecCC
Q 042009 108 VLSLMGRRSIDPTTEESCYQWELLAQALMSLVTERLIEEEKLDSFNAPYYAPCPEELKMAIQKEGSFIIDRLGHFEIDWD 187 (262)
Q Consensus 108 vl~~~g~~~~~~~~~~~~~~~~~l~~al~dmv~eGli~~e~~dsfn~P~y~ps~~Ev~~~ie~~gsF~I~~le~~~~~w~ 187 (262)
++++.+.... ..+. .++++.........-...-..+.+.++++++...+.+.| +.++..+... . .
T Consensus 127 ~~~~~~~~~~--------~~~~----~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~~~g-~~v~~~~~~~-~-~ 191 (258)
T PRK01683 127 AVQMPDNLDE--------PSHV----LMREVAENGPWEQNLPDRGARRAPLPPPHAYYDALAPAA-CRVDIWHTTY-Y-H 191 (258)
T ss_pred EEECCCCCCC--------HHHH----HHHHHHccCchHHHhccccccCcCCCCHHHHHHHHHhCC-Cceeeeeeee-e-e
Confidence 9986432110 0111 122222111000000000112346689999999999988 5554433321 1 1
Q ss_pred CCcccccccccccchhHHHHHhhhhhh-hhhHHHHHhhHHHHHHHHHHHHHHHHHHH-h-hcC---CceEEEEEEEEecC
Q 042009 188 GGVEELTNTTLLPLSRGQRVAKTVRAV-VESMFELHFGKAMMDLLFARYAEMVDDYL-S-KNR---AKYINLVISIIKKD 261 (262)
Q Consensus 188 ~~~~~~~~d~~~~~~~a~~~a~~~RA~-~ep~l~~hfge~I~delF~r~~~~v~~~~-~-~~~---~~~~~~~v~L~r~~ 261 (262)
++. ....+..++++. +.|++ .+++++-.+++-+.|...+.+.. . ..+ ..|.-++++-+|++
T Consensus 192 ~~~------------~~~~~~~~~~~~~~~~~~-~~l~~~~~~~f~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 258 (258)
T PRK01683 192 PMP------------SAQAIVEWVKGTGLRPFL-DPLTESEQAAFLAAYLARIAEAYPLQADGKVLLAFPRLFIVARRKE 258 (258)
T ss_pred ecC------------CchhhhhhhhhccHHHHH-hhCCHHHHHHHHHHHHHHHHHHCCCCCCCcEEcccceEEEEEEecC
Confidence 111 122344566654 35554 78888889999999998888773 2 222 45666777777753
No 5
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=96.56 E-value=0.013 Score=50.56 Aligned_cols=91 Identities=21% Similarity=0.237 Sum_probs=58.8
Q ss_pred CccccccCCCCccceEEcccccccccCCCccccCCCCccccCCCceeecCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 042009 23 GSFYDRLFPDKSLHFVHSSSSLHWLSQVPPALESNATPAALNKGKIYISKSSPQCVLDAYSLQFQNNFLIFLKSRAAEMV 102 (262)
Q Consensus 23 gSFY~rlfP~~Svh~~~Ss~alHWLS~~P~~~~~~~~s~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~ 102 (262)
+++-+..+|+++.|+++++.++||+.. | ..+|+.-.+-|+
T Consensus 87 ~d~~~~~~~~~~fD~vi~~~~l~~~~~-~---------------------------------------~~~l~~~~~~L~ 126 (240)
T TIGR02072 87 GDAEKLPLEDSSFDLIVSNLALQWCDD-L---------------------------------------SQALSELARVLK 126 (240)
T ss_pred cchhhCCCCCCceeEEEEhhhhhhccC-H---------------------------------------HHHHHHHHHHcC
Confidence 555666788999999999999999732 1 124555578899
Q ss_pred cCceEEEEecccCCCCCCCchhhHHHHHHHHHHHHHHHhccCChhhhcccccCcccCCHHHHHHHHhcCCceEEEEEEeE
Q 042009 103 AGGRMVLSLMGRRSIDPTTEESCYQWELLAQALMSLVTERLIEEEKLDSFNAPYYAPCPEELKMAIQKEGSFIIDRLGHF 182 (262)
Q Consensus 103 ~GG~mvl~~~g~~~~~~~~~~~~~~~~~l~~al~dmv~eGli~~e~~dsfn~P~y~ps~~Ev~~~ie~~gsF~I~~le~~ 182 (262)
|||.+++..++... ...+..++.. ....+++.+++...+.+. |.+..++..
T Consensus 127 ~~G~l~~~~~~~~~-----------~~~~~~~~~~----------------~~~~~~~~~~~~~~l~~~--f~~~~~~~~ 177 (240)
T TIGR02072 127 PGGLLAFSTFGPGT-----------LHELRQSFGQ----------------HGLRYLSLDELKALLKNS--FELLTLEEE 177 (240)
T ss_pred CCcEEEEEeCCccC-----------HHHHHHHHHH----------------hccCCCCHHHHHHHHHHh--cCCcEEEEE
Confidence 99999998665432 1112222211 123356788888888765 766555443
No 6
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=96.45 E-value=0.018 Score=51.94 Aligned_cols=102 Identities=13% Similarity=0.099 Sum_probs=58.1
Q ss_pred cCCCCccceEEcccccccccCCCccccCCCCccccCCCceeecCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhccCceEE
Q 042009 29 LFPDKSLHFVHSSSSLHWLSQVPPALESNATPAALNKGKIYISKSSPQCVLDAYSLQFQNNFLIFLKSRAAEMVAGGRMV 108 (262)
Q Consensus 29 lfP~~Svh~~~Ss~alHWLS~~P~~~~~~~~s~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mv 108 (262)
-||++|+|++++++++||+.. |.. +|+.=.+-|+|||+++
T Consensus 140 p~~~~sfD~V~~~~~l~~~~d-~~~---------------------------------------~l~ei~rvLkpGG~l~ 179 (261)
T PLN02233 140 PFDDCYFDAITMGYGLRNVVD-RLK---------------------------------------AMQEMYRVLKPGSRVS 179 (261)
T ss_pred CCCCCCEeEEEEecccccCCC-HHH---------------------------------------HHHHHHHHcCcCcEEE
Confidence 478999999999999999643 111 1111256799999999
Q ss_pred EEecccCCCCCCCchhhHHHHHH-HHHHHHHHH-hccCChhhhcccccC---cccCCHHHHHHHHhcCCceEEEEE
Q 042009 109 LSLMGRRSIDPTTEESCYQWELL-AQALMSLVT-ERLIEEEKLDSFNAP---YYAPCPEELKMAIQKEGSFIIDRL 179 (262)
Q Consensus 109 l~~~g~~~~~~~~~~~~~~~~~l-~~al~dmv~-eGli~~e~~dsfn~P---~y~ps~~Ev~~~ie~~gsF~I~~l 179 (262)
+.-.++++... ...+++.+ ...+.-+.. -|. .+... .++ ..+++.+|+.+.+++.| |++.+.
T Consensus 180 i~d~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~--~~~y~--~l~~s~~~f~s~~el~~ll~~aG-F~~~~~ 246 (261)
T PLN02233 180 ILDFNKSTQPF----TTSMQEWMIDNVVVPVATGYGL--AKEYE--YLKSSINEYLTGEELEKLALEAG-FSSAKH 246 (261)
T ss_pred EEECCCCCcHH----HHHHHHHHHhhhhhHHHHHhCC--hHHHH--HHHHHHHhcCCHHHHHHHHHHCC-CCEEEE
Confidence 99887655311 11111111 111111100 121 11110 011 12789999999999998 876543
No 7
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=96.42 E-value=0.11 Score=50.57 Aligned_cols=140 Identities=15% Similarity=0.174 Sum_probs=82.6
Q ss_pred ccCccccccCCCCccceEEcccccccccCCCccccCCCCccccCCCceeecCCCcHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042009 21 VAGSFYDRLFPDKSLHFVHSSSSLHWLSQVPPALESNATPAALNKGKIYISKSSPQCVLDAYSLQFQNNFLIFLKSRAAE 100 (262)
Q Consensus 21 vpgSFY~rlfP~~Svh~~~Ss~alHWLS~~P~~~~~~~~s~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~E 100 (262)
+-+.+....+|++++|+++|..++||+.. |.. + |+.=++-
T Consensus 319 ~~~d~~~~~~~~~~fD~I~s~~~l~h~~d-~~~------------------------~---------------l~~~~r~ 358 (475)
T PLN02336 319 EVADCTKKTYPDNSFDVIYSRDTILHIQD-KPA------------------------L---------------FRSFFKW 358 (475)
T ss_pred EEcCcccCCCCCCCEEEEEECCcccccCC-HHH------------------------H---------------HHHHHHH
Confidence 33567777789999999999999999743 111 1 1111567
Q ss_pred hccCceEEEEecccCCCCCCCchhhHHHHHHHHHHHHHHHhccCChhhhcccccCcccCCHHHHHHHHhcCCceEEEEEE
Q 042009 101 MVAGGRMVLSLMGRRSIDPTTEESCYQWELLAQALMSLVTERLIEEEKLDSFNAPYYAPCPEELKMAIQKEGSFIIDRLG 180 (262)
Q Consensus 101 L~~GG~mvl~~~g~~~~~~~~~~~~~~~~~l~~al~dmv~eGli~~e~~dsfn~P~y~ps~~Ev~~~ie~~gsF~I~~le 180 (262)
|+|||++++.-..+....+ .. . +...+.. .| ...++.+++.+.+++.| |++...+
T Consensus 359 LkpgG~l~i~~~~~~~~~~-~~---~----~~~~~~~---~g-------------~~~~~~~~~~~~l~~aG-F~~i~~~ 413 (475)
T PLN02336 359 LKPGGKVLISDYCRSPGTP-SP---E----FAEYIKQ---RG-------------YDLHDVQAYGQMLKDAG-FDDVIAE 413 (475)
T ss_pred cCCCeEEEEEEeccCCCCC-cH---H----HHHHHHh---cC-------------CCCCCHHHHHHHHHHCC-Ceeeeee
Confidence 9999999999876654322 11 0 1111111 11 24578999999999998 8876544
Q ss_pred eEeecCCCCcccccccccccchhHHHHHhhhhhh--hhhHHHHHhhHHHHHHHHHHHHHHHHHH
Q 042009 181 HFEIDWDGGVEELTNTTLLPLSRGQRVAKTVRAV--VESMFELHFGKAMMDLLFARYAEMVDDY 242 (262)
Q Consensus 181 ~~~~~w~~~~~~~~~d~~~~~~~a~~~a~~~RA~--~ep~l~~hfge~I~delF~r~~~~v~~~ 242 (262)
.+. ..+...++....++ -..-+.+.+|++..+.+-..+...+...
T Consensus 414 d~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 460 (475)
T PLN02336 414 DRT-----------------DQFLQVLQRELDAVEKEKDEFISDFSEEDYNDIVGGWKAKLVRS 460 (475)
T ss_pred cch-----------------HHHHHHHHHHHHHHHhCHHHHHHhcCHHHHHHHHHhHHHHHhhh
Confidence 221 12222332222221 1112345678877777777777766543
No 8
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=96.41 E-value=0.012 Score=51.35 Aligned_cols=115 Identities=18% Similarity=0.197 Sum_probs=63.0
Q ss_pred ccCccccccCCCCccceEEcccccccccCCCccccCCCCccccCCCceeecCCCcHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042009 21 VAGSFYDRLFPDKSLHFVHSSSSLHWLSQVPPALESNATPAALNKGKIYISKSSPQCVLDAYSLQFQNNFLIFLKSRAAE 100 (262)
Q Consensus 21 vpgSFY~rlfP~~Svh~~~Ss~alHWLS~~P~~~~~~~~s~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~E 100 (262)
+.+....-.+|++++|++++..++||++. | . .+|+.=.+=
T Consensus 101 ~~~d~~~~~~~~~~fD~V~~~~~l~~~~~-~------------------------~---------------~~l~~~~~~ 140 (231)
T TIGR02752 101 VHGNAMELPFDDNSFDYVTIGFGLRNVPD-Y------------------------M---------------QVLREMYRV 140 (231)
T ss_pred EEechhcCCCCCCCccEEEEecccccCCC-H------------------------H---------------HHHHHHHHH
Confidence 33444444478899999999999998643 1 0 122333567
Q ss_pred hccCceEEEEecccCCCCCCCchhhHH----HHHHHHHHHHHHHhccCChhhhcccccCcccCCHHHHHHHHhcCCceEE
Q 042009 101 MVAGGRMVLSLMGRRSIDPTTEESCYQ----WELLAQALMSLVTERLIEEEKLDSFNAPYYAPCPEELKMAIQKEGSFII 176 (262)
Q Consensus 101 L~~GG~mvl~~~g~~~~~~~~~~~~~~----~~~l~~al~dmv~eGli~~e~~dsfn~P~y~ps~~Ev~~~ie~~gsF~I 176 (262)
|+|||++++.-.+.++. ...... +..+--.+..+...+......+. ..-..+|+.+|+++.+++.| |++
T Consensus 141 Lk~gG~l~~~~~~~~~~----~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~l~~aG-f~~ 213 (231)
T TIGR02752 141 VKPGGKVVCLETSQPTI----PGFKQLYFFYFKYIMPLFGKLFAKSYKEYSWLQ--ESTRDFPGMDELAEMFQEAG-FKD 213 (231)
T ss_pred cCcCeEEEEEECCCCCC----hHHHHHHHHHHcChhHHhhHHhcCCHHHHHHHH--HHHHHcCCHHHHHHHHHHcC-CCe
Confidence 89999999876554331 111111 11111111111111110000000 11235789999999999999 987
Q ss_pred EEEEeE
Q 042009 177 DRLGHF 182 (262)
Q Consensus 177 ~~le~~ 182 (262)
.+++.+
T Consensus 214 ~~~~~~ 219 (231)
T TIGR02752 214 VEVKSY 219 (231)
T ss_pred eEEEEc
Confidence 777655
No 9
>PRK08317 hypothetical protein; Provisional
Probab=96.30 E-value=0.38 Score=41.22 Aligned_cols=104 Identities=17% Similarity=0.137 Sum_probs=58.2
Q ss_pred ccccccCCCCccceEEcccccccccCCCccccCCCCccccCCCceeecCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 042009 24 SFYDRLFPDKSLHFVHSSSSLHWLSQVPPALESNATPAALNKGKIYISKSSPQCVLDAYSLQFQNNFLIFLKSRAAEMVA 103 (262)
Q Consensus 24 SFY~rlfP~~Svh~~~Ss~alHWLS~~P~~~~~~~~s~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~ 103 (262)
.+...-+|++++|++++..++||+.. |. .+|+.-.+-|+|
T Consensus 77 d~~~~~~~~~~~D~v~~~~~~~~~~~-~~---------------------------------------~~l~~~~~~L~~ 116 (241)
T PRK08317 77 DADGLPFPDGSFDAVRSDRVLQHLED-PA---------------------------------------RALAEIARVLRP 116 (241)
T ss_pred ccccCCCCCCCceEEEEechhhccCC-HH---------------------------------------HHHHHHHHHhcC
Confidence 44444577889999999999988654 11 123333667899
Q ss_pred CceEEEEecccCCCCCCCchhhHHHHHHHHHHHHHHHhccCChhhhcccccCcccCCHHHHHHHHhcCCceEEEEEEeEe
Q 042009 104 GGRMVLSLMGRRSIDPTTEESCYQWELLAQALMSLVTERLIEEEKLDSFNAPYYAPCPEELKMAIQKEGSFIIDRLGHFE 183 (262)
Q Consensus 104 GG~mvl~~~g~~~~~~~~~~~~~~~~~l~~al~dmv~eGli~~e~~dsfn~P~y~ps~~Ev~~~ie~~gsF~I~~le~~~ 183 (262)
||.+++....-+....... ....+.-+...|.. . +.- ..+..++...+++.| |++.+++.+.
T Consensus 117 gG~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~----------~~~---~~~~~~~~~~l~~aG-f~~~~~~~~~ 178 (241)
T PRK08317 117 GGRVVVLDTDWDTLVWHSG-DRALMRKILNFWSD---H----------FAD---PWLGRRLPGLFREAG-LTDIEVEPYT 178 (241)
T ss_pred CcEEEEEecCCCceeecCC-ChHHHHHHHHHHHh---c----------CCC---CcHHHHHHHHHHHcC-CCceeEEEEE
Confidence 9999988653221100010 11111112222221 1 100 123468899999888 8877777765
Q ss_pred ec
Q 042009 184 ID 185 (262)
Q Consensus 184 ~~ 185 (262)
..
T Consensus 179 ~~ 180 (241)
T PRK08317 179 LI 180 (241)
T ss_pred Ee
Confidence 44
No 10
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=96.20 E-value=0.041 Score=48.49 Aligned_cols=106 Identities=15% Similarity=0.123 Sum_probs=61.9
Q ss_pred ccCccccccCCCCccceEEcccccccccCCCccccCCCCccccCCCceeecCCCcHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042009 21 VAGSFYDRLFPDKSLHFVHSSSSLHWLSQVPPALESNATPAALNKGKIYISKSSPQCVLDAYSLQFQNNFLIFLKSRAAE 100 (262)
Q Consensus 21 vpgSFY~rlfP~~Svh~~~Ss~alHWLS~~P~~~~~~~~s~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~E 100 (262)
+-|++..--+| +.|++++++++||++. . |...+|+.=.+-
T Consensus 111 ~~~d~~~~~~~--~~d~v~~~~~l~~~~~--~------------------------------------~~~~~l~~i~~~ 150 (239)
T TIGR00740 111 LCNDIRHVEIK--NASMVILNFTLQFLPP--E------------------------------------DRIALLTKIYEG 150 (239)
T ss_pred EECChhhCCCC--CCCEEeeecchhhCCH--H------------------------------------HHHHHHHHHHHh
Confidence 44666543344 4788999999999742 1 111234444678
Q ss_pred hccCceEEEEecccCCCCCCCchhhHHHHHHHHHHHHHHH-hccCChhhh----cccccCcccCCHHHHHHHHhcCCceE
Q 042009 101 MVAGGRMVLSLMGRRSIDPTTEESCYQWELLAQALMSLVT-ERLIEEEKL----DSFNAPYYAPCPEELKMAIQKEGSFI 175 (262)
Q Consensus 101 L~~GG~mvl~~~g~~~~~~~~~~~~~~~~~l~~al~dmv~-eGli~~e~~----dsfn~P~y~ps~~Ev~~~ie~~gsF~ 175 (262)
|+|||++++.-..+.++.. ..+.+...+..+.. .|. +++++ +.+.-.....|++|+++.+++.| |.
T Consensus 151 LkpgG~l~i~d~~~~~~~~-------~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~aG-F~ 221 (239)
T TIGR00740 151 LNPNGVLVLSEKFRFEDTK-------INHLLIDLHHQFKRANGY-SELEISQKRTALENVMRTDSIETHKARLKNVG-FS 221 (239)
T ss_pred cCCCeEEEEeecccCCCHh-------HHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHhccCCCCCHHHHHHHHHHcC-Cc
Confidence 9999999998654433221 11223333333332 343 44433 33333445579999999999999 65
No 11
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=96.11 E-value=0.13 Score=46.34 Aligned_cols=143 Identities=13% Similarity=0.087 Sum_probs=79.1
Q ss_pred ccCccccccCCCCccceEEcccccccccCCCccccCCCCccccCCCceeecCCCcHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042009 21 VAGSFYDRLFPDKSLHFVHSSSSLHWLSQVPPALESNATPAALNKGKIYISKSSPQCVLDAYSLQFQNNFLIFLKSRAAE 100 (262)
Q Consensus 21 vpgSFY~rlfP~~Svh~~~Ss~alHWLS~~P~~~~~~~~s~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~E 100 (262)
+.+++...-+|+++.|+++|..++|+++. .|...+|+.=++=
T Consensus 104 ~~~D~~~~~~~~~~FD~V~s~~~l~h~~~--------------------------------------~d~~~~l~~i~r~ 145 (263)
T PTZ00098 104 EANDILKKDFPENTFDMIYSRDAILHLSY--------------------------------------ADKKKLFEKCYKW 145 (263)
T ss_pred EECCcccCCCCCCCeEEEEEhhhHHhCCH--------------------------------------HHHHHHHHHHHHH
Confidence 44666666689999999999888765421 0112223333678
Q ss_pred hccCceEEEEecccCCCCCCCchhhHHHHHHHHHHHHHHHhccCChhhhcccccCcccCCHHHHHHHHhcCCceEEEEEE
Q 042009 101 MVAGGRMVLSLMGRRSIDPTTEESCYQWELLAQALMSLVTERLIEEEKLDSFNAPYYAPCPEELKMAIQKEGSFIIDRLG 180 (262)
Q Consensus 101 L~~GG~mvl~~~g~~~~~~~~~~~~~~~~~l~~al~dmv~eGli~~e~~dsfn~P~y~ps~~Ev~~~ie~~gsF~I~~le 180 (262)
|+|||+++++-......... -+.+...+.. . ....++++|+.+.+++.| |++...+
T Consensus 146 LkPGG~lvi~d~~~~~~~~~-------~~~~~~~~~~----~------------~~~~~~~~~~~~~l~~aG-F~~v~~~ 201 (263)
T PTZ00098 146 LKPNGILLITDYCADKIENW-------DEEFKAYIKK----R------------KYTLIPIQEYGDLIKSCN-FQNVVAK 201 (263)
T ss_pred cCCCcEEEEEEeccccccCc-------HHHHHHHHHh----c------------CCCCCCHHHHHHHHHHCC-CCeeeEE
Confidence 99999999986654332110 0111111111 0 113469999999999999 7765544
Q ss_pred eEeecCCCCcccccccccccchhHHHHHhhhhhhhhhHHHHHhhHHHHHHHHHHHHHHHH
Q 042009 181 HFEIDWDGGVEELTNTTLLPLSRGQRVAKTVRAVVESMFELHFGKAMMDLLFARYAEMVD 240 (262)
Q Consensus 181 ~~~~~w~~~~~~~~~d~~~~~~~a~~~a~~~RA~~ep~l~~hfge~I~delF~r~~~~v~ 240 (262)
-....|. ..+. .+...+++- +.-+.+.+|++-.|.+-..+.+.+.
T Consensus 202 d~~~~~~-------------~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (263)
T PTZ00098 202 DISDYWL-------------ELLQ-VELKKLEEK-KEEFLKLYSEKEYNSLKDGWTRKIK 246 (263)
T ss_pred eCcHHHH-------------HHHH-HHHHHHHHh-HHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 2210010 1111 112222222 4445666888777777666655554
No 12
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=95.97 E-value=0.0085 Score=48.45 Aligned_cols=90 Identities=24% Similarity=0.363 Sum_probs=57.4
Q ss_pred cccCCCCccceEEcccccccccCCCccccCCCCccccCCCceeecCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhccCce
Q 042009 27 DRLFPDKSLHFVHSSSSLHWLSQVPPALESNATPAALNKGKIYISKSSPQCVLDAYSLQFQNNFLIFLKSRAAEMVAGGR 106 (262)
Q Consensus 27 ~rlfP~~Svh~~~Ss~alHWLS~~P~~~~~~~~s~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~ 106 (262)
...+|++++|+++|+.+|||+.. |..+ |+.=.+=|+|||.
T Consensus 71 ~~~~~~~~fD~i~~~~~l~~~~d-~~~~---------------------------------------l~~l~~~LkpgG~ 110 (161)
T PF13489_consen 71 DPPFPDGSFDLIICNDVLEHLPD-PEEF---------------------------------------LKELSRLLKPGGY 110 (161)
T ss_dssp THHCHSSSEEEEEEESSGGGSSH-HHHH---------------------------------------HHHHHHCEEEEEE
T ss_pred hhhccccchhhHhhHHHHhhccc-HHHH---------------------------------------HHHHHHhcCCCCE
Confidence 34478899999999999999874 2221 2222567999999
Q ss_pred EEEEecccCCCCCCCchhhHHHHHHHHHHHHHHHhccCChhhhcccccCcccCCHHHHHHHHhcCCceEEEE
Q 042009 107 MVLSLMGRRSIDPTTEESCYQWELLAQALMSLVTERLIEEEKLDSFNAPYYAPCPEELKMAIQKEGSFIIDR 178 (262)
Q Consensus 107 mvl~~~g~~~~~~~~~~~~~~~~~l~~al~dmv~eGli~~e~~dsfn~P~y~ps~~Ev~~~ie~~gsF~I~~ 178 (262)
+++....+... ....+... ....... --..+.+.++++..+++.| |+|.+
T Consensus 111 l~~~~~~~~~~-------------~~~~~~~~---~~~~~~~-----~~~~~~~~~~~~~ll~~~G-~~iv~ 160 (161)
T PF13489_consen 111 LVISDPNRDDP-------------SPRSFLKW---RYDRPYG-----GHVHFFSPDELRQLLEQAG-FEIVE 160 (161)
T ss_dssp EEEEEEBTTSH-------------HHHHHHHC---CGTCHHT-----TTTEEBBHHHHHHHHHHTT-EEEEE
T ss_pred EEEEEcCCcch-------------hhhHHHhc---CCcCccC-----ceeccCCHHHHHHHHHHCC-CEEEE
Confidence 99999876430 01111110 1111110 1125559999999999999 88754
No 13
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=95.95 E-value=0.01 Score=53.29 Aligned_cols=114 Identities=23% Similarity=0.285 Sum_probs=68.9
Q ss_pred EeeccCccccccCCCCccceEEcccccccccCCCccccCCCCccccCCCceeecCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 042009 18 ISGVAGSFYDRLFPDKSLHFVHSSSSLHWLSQVPPALESNATPAALNKGKIYISKSSPQCVLDAYSLQFQNNFLIFLKSR 97 (262)
Q Consensus 18 ~~~vpgSFY~rlfP~~Svh~~~Ss~alHWLS~~P~~~~~~~~s~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~R 97 (262)
+.=|=|..-+=-||++|+|++.++++||++.+.|..|. |+
T Consensus 103 i~fv~~dAe~LPf~D~sFD~vt~~fglrnv~d~~~aL~------------------------E~---------------- 142 (238)
T COG2226 103 VEFVVGDAENLPFPDNSFDAVTISFGLRNVTDIDKALK------------------------EM---------------- 142 (238)
T ss_pred eEEEEechhhCCCCCCccCEEEeeehhhcCCCHHHHHH------------------------HH----------------
Confidence 33344556666699999999999999999887555432 21
Q ss_pred HHhhccCceEEEEecccCCCCCCCchhhHHHHHHHH-HHHHHHHhccCChhhhccc----ccCcccCCHHHHHHHHhcCC
Q 042009 98 AAEMVAGGRMVLSLMGRRSIDPTTEESCYQWELLAQ-ALMSLVTERLIEEEKLDSF----NAPYYAPCPEELKMAIQKEG 172 (262)
Q Consensus 98 a~EL~~GG~mvl~~~g~~~~~~~~~~~~~~~~~l~~-al~dmv~eGli~~e~~dsf----n~P~y~ps~~Ev~~~ie~~g 172 (262)
++=|+|||++++.=.+++...+.... ....... ++--+. .+++ +..+.+ ....-+|+.+|+.+.+++.|
T Consensus 143 ~RVlKpgG~~~vle~~~p~~~~~~~~---~~~~~~~~v~P~~g--~~~~-~~~~~y~yL~eSi~~~p~~~~l~~~~~~~g 216 (238)
T COG2226 143 YRVLKPGGRLLVLEFSKPDNPVLRKA---YILYYFKYVLPLIG--KLVA-KDAEAYEYLAESIRRFPDQEELKQMIEKAG 216 (238)
T ss_pred HHhhcCCeEEEEEEcCCCCchhhHHH---HHHHHHHhHhhhhc--eeee-cChHHHHHHHHHHHhCCCHHHHHHHHHhcC
Confidence 56799999999988877654322111 1111111 111111 1111 111111 33456899999999999988
Q ss_pred ceEEEE
Q 042009 173 SFIIDR 178 (262)
Q Consensus 173 sF~I~~ 178 (262)
|+...
T Consensus 217 -f~~i~ 221 (238)
T COG2226 217 -FEEVR 221 (238)
T ss_pred -ceEEe
Confidence 66444
No 14
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=95.86 E-value=0.042 Score=45.79 Aligned_cols=108 Identities=14% Similarity=0.094 Sum_probs=58.7
Q ss_pred CccccccCCCCccceEEcccccccccCCCccccCCCCccccCCCceeecCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 042009 23 GSFYDRLFPDKSLHFVHSSSSLHWLSQVPPALESNATPAALNKGKIYISKSSPQCVLDAYSLQFQNNFLIFLKSRAAEMV 102 (262)
Q Consensus 23 gSFY~rlfP~~Svh~~~Ss~alHWLS~~P~~~~~~~~s~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~ 102 (262)
|...+=-+|++++|++++++++||+.+ | .. +|+.=.+=|+
T Consensus 33 ~d~~~lp~~~~~fD~v~~~~~l~~~~d-~------------------------~~---------------~l~ei~rvLk 72 (160)
T PLN02232 33 GDAIDLPFDDCEFDAVTMGYGLRNVVD-R------------------------LR---------------AMKEMYRVLK 72 (160)
T ss_pred echhhCCCCCCCeeEEEecchhhcCCC-H------------------------HH---------------HHHHHHHHcC
Confidence 344443478999999999999999742 1 11 1111256789
Q ss_pred cCceEEEEecccCCCCCCCchhhHHHHHHHHHHHHHHHhccCChhhhcccccC----cccCCHHHHHHHHhcCCceEEEE
Q 042009 103 AGGRMVLSLMGRRSIDPTTEESCYQWELLAQALMSLVTERLIEEEKLDSFNAP----YYAPCPEELKMAIQKEGSFIIDR 178 (262)
Q Consensus 103 ~GG~mvl~~~g~~~~~~~~~~~~~~~~~l~~al~dmv~eGli~~e~~dsfn~P----~y~ps~~Ev~~~ie~~gsF~I~~ 178 (262)
|||++++.-.+.++... ...++..... .-+..-|.+... .+.+..- ..+++++|+.+.+++.| |+..+
T Consensus 73 pGG~l~i~d~~~~~~~~----~~~~~~~~~~--~~~~~~~~~~~~-~~~y~yl~~si~~f~~~~el~~ll~~aG-F~~~~ 144 (160)
T PLN02232 73 PGSRVSILDFNKSNQSV----TTFMQGWMID--NVVVPVATVYDL-AKEYEYLKYSINGYLTGEELETLALEAG-FSSAC 144 (160)
T ss_pred cCeEEEEEECCCCChHH----HHHHHHHHcc--chHhhhhHHhCC-hHHHHhHHHHHHHCcCHHHHHHHHHHcC-CCcce
Confidence 99999998776544211 0111110000 000111111111 1122111 24789999999999998 76433
No 15
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=95.81 E-value=0.052 Score=50.62 Aligned_cols=62 Identities=23% Similarity=0.400 Sum_probs=39.4
Q ss_pred HHhhccCceEEEEecccCCCCCCCchhhHHHHHHHHHHHHHHHhccCChhhhcccccCcccCCHHHHHHHHhcCCceEEE
Q 042009 98 AAEMVAGGRMVLSLMGRRSIDPTTEESCYQWELLAQALMSLVTERLIEEEKLDSFNAPYYAPCPEELKMAIQKEGSFIID 177 (262)
Q Consensus 98 a~EL~~GG~mvl~~~g~~~~~~~~~~~~~~~~~l~~al~dmv~eGli~~e~~dsfn~P~y~ps~~Ev~~~ie~~gsF~I~ 177 (262)
++-|+|||++|+..+..+.+.... +...+.+..+.-.++.||.+++...+++.| |++.
T Consensus 213 ~~~LkpGG~lvl~~~~i~~~~~~~---------------------l~p~~~y~~~~~~~~lps~~~l~~~L~~aG-F~~i 270 (322)
T PRK15068 213 KDQLVPGGELVLETLVIDGDENTV---------------------LVPGDRYAKMRNVYFIPSVPALKNWLERAG-FKDV 270 (322)
T ss_pred HHhcCCCcEEEEEEEEecCCCccc---------------------cCchhHHhcCccceeCCCHHHHHHHHHHcC-CceE
Confidence 677999999999866544322100 011112222333346789999999999999 8876
Q ss_pred EEEe
Q 042009 178 RLGH 181 (262)
Q Consensus 178 ~le~ 181 (262)
++..
T Consensus 271 ~~~~ 274 (322)
T PRK15068 271 RIVD 274 (322)
T ss_pred EEEe
Confidence 6653
No 16
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=95.77 E-value=0.063 Score=47.90 Aligned_cols=102 Identities=17% Similarity=0.298 Sum_probs=60.4
Q ss_pred CCCCccceEEcccccccccCCCccccCCCCccccCCCceeecCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhccCceEEE
Q 042009 30 FPDKSLHFVHSSSSLHWLSQVPPALESNATPAALNKGKIYISKSSPQCVLDAYSLQFQNNFLIFLKSRAAEMVAGGRMVL 109 (262)
Q Consensus 30 fP~~Svh~~~Ss~alHWLS~~P~~~~~~~~s~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl 109 (262)
+|++++|++++..+|||+.. |.. +.+ .=++=|+|||++++
T Consensus 108 ~~~~~fD~V~~~~vl~~~~~-~~~------------------------~l~---------------~~~~~LkpgG~l~i 147 (255)
T PRK11036 108 HLETPVDLILFHAVLEWVAD-PKS------------------------VLQ---------------TLWSVLRPGGALSL 147 (255)
T ss_pred hcCCCCCEEEehhHHHhhCC-HHH------------------------HHH---------------HHHHHcCCCeEEEE
Confidence 56789999999999999854 211 111 11456999999998
Q ss_pred EecccCCCCCCCchhhHHHHHHHHHHHHHHHhccCChhhhcccccCcccCCHHHHHHHHhcCCceEEEEEEeEe
Q 042009 110 SLMGRRSIDPTTEESCYQWELLAQALMSLVTERLIEEEKLDSFNAPYYAPCPEELKMAIQKEGSFIIDRLGHFE 183 (262)
Q Consensus 110 ~~~g~~~~~~~~~~~~~~~~~l~~al~dmv~eGli~~e~~dsfn~P~y~ps~~Ev~~~ie~~gsF~I~~le~~~ 183 (262)
++..... ..+-.++..-+ +.+..|+...+.. .-.|.+..+++|+.+.+++.| |++....-+.
T Consensus 148 ~~~n~~~--------~~~~~~~~~~~-~~~~~~~~~~~~~--~~~p~~~~~~~~l~~~l~~aG-f~~~~~~gi~ 209 (255)
T PRK11036 148 MFYNANG--------LLMHNMVAGNF-DYVQAGMPKRKKR--TLSPDYPLDPEQVYQWLEEAG-WQIMGKTGVR 209 (255)
T ss_pred EEECccH--------HHHHHHHccCh-HHHHhcCcccccc--CCCCCCCCCHHHHHHHHHHCC-CeEeeeeeEE
Confidence 8665321 00111111111 1123343322211 123667789999999999998 9887655443
No 17
>PLN02244 tocopherol O-methyltransferase
Probab=95.57 E-value=0.18 Score=47.31 Aligned_cols=103 Identities=15% Similarity=0.174 Sum_probs=58.4
Q ss_pred CccccccCCCCccceEEcccccccccCCCccccCCCCccccCCCceeecCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 042009 23 GSFYDRLFPDKSLHFVHSSSSLHWLSQVPPALESNATPAALNKGKIYISKSSPQCVLDAYSLQFQNNFLIFLKSRAAEMV 102 (262)
Q Consensus 23 gSFY~rlfP~~Svh~~~Ss~alHWLS~~P~~~~~~~~s~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~ 102 (262)
+...+--||++++|+++|..++|++... . .+|+.=.+-|+
T Consensus 175 ~D~~~~~~~~~~FD~V~s~~~~~h~~d~-------------------------~---------------~~l~e~~rvLk 214 (340)
T PLN02244 175 ADALNQPFEDGQFDLVWSMESGEHMPDK-------------------------R---------------KFVQELARVAA 214 (340)
T ss_pred cCcccCCCCCCCccEEEECCchhccCCH-------------------------H---------------HHHHHHHHHcC
Confidence 4555556899999999999998885320 0 01111156699
Q ss_pred cCceEEEEecccCCCCCCCchhhHHHHHHHHHHHHHHHhccCChhhhcccccCcccCCHHHHHHHHhcCCceEEEEEE
Q 042009 103 AGGRMVLSLMGRRSIDPTTEESCYQWELLAQALMSLVTERLIEEEKLDSFNAPYYAPCPEELKMAIQKEGSFIIDRLG 180 (262)
Q Consensus 103 ~GG~mvl~~~g~~~~~~~~~~~~~~~~~l~~al~dmv~eGli~~e~~dsfn~P~y~ps~~Ev~~~ie~~gsF~I~~le 180 (262)
|||+++++.....+..+....... .-...+..+.. .+.+|. ..+.+|+...+++.| |+..+.+
T Consensus 215 pGG~lvi~~~~~~~~~~~~~~l~~---~~~~~~~~i~~----------~~~~p~-~~s~~~~~~~l~~aG-f~~v~~~ 277 (340)
T PLN02244 215 PGGRIIIVTWCHRDLEPGETSLKP---DEQKLLDKICA----------AYYLPA-WCSTSDYVKLAESLG-LQDIKTE 277 (340)
T ss_pred CCcEEEEEEecccccccccccCCH---HHHHHHHHHHh----------hccCCC-CCCHHHHHHHHHHCC-CCeeEee
Confidence 999999986554332211111000 01111222111 123342 358999999999999 7765433
No 18
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=95.55 E-value=0.014 Score=51.83 Aligned_cols=98 Identities=11% Similarity=0.119 Sum_probs=59.1
Q ss_pred ccccccCCCCccceEEcccccccccCCCccccCCCCccccCCCceeecCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 042009 24 SFYDRLFPDKSLHFVHSSSSLHWLSQVPPALESNATPAALNKGKIYISKSSPQCVLDAYSLQFQNNFLIFLKSRAAEMVA 103 (262)
Q Consensus 24 SFY~rlfP~~Svh~~~Ss~alHWLS~~P~~~~~~~~s~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~ 103 (262)
..-.--+|++++|+++|+.++||+.. |. .+|+.=.+=|+|
T Consensus 93 d~~~~~~~~~~fD~V~s~~~l~~~~d-~~---------------------------------------~~l~~~~~~Lk~ 132 (251)
T PRK10258 93 DIESLPLATATFDLAWSNLAVQWCGN-LS---------------------------------------TALRELYRVVRP 132 (251)
T ss_pred CcccCcCCCCcEEEEEECchhhhcCC-HH---------------------------------------HHHHHHHHHcCC
Confidence 33333478899999999999999554 11 112222567899
Q ss_pred CceEEEEecccCCCCCCCchhhHHHHHHHHHHHHHHHhccCChhhhcccccCcccCCHHHHHHHHhcCCceEEEEEEeEe
Q 042009 104 GGRMVLSLMGRRSIDPTTEESCYQWELLAQALMSLVTERLIEEEKLDSFNAPYYAPCPEELKMAIQKEGSFIIDRLGHFE 183 (262)
Q Consensus 104 GG~mvl~~~g~~~~~~~~~~~~~~~~~l~~al~dmv~eGli~~e~~dsfn~P~y~ps~~Ev~~~ie~~gsF~I~~le~~~ 183 (262)
||.++++.++.++ +.-+.++|..+- + -.-..-+++.+|+...+...+ +++ ..+.+.
T Consensus 133 gG~l~~~~~~~~~-----------~~el~~~~~~~~--~---------~~~~~~~~~~~~l~~~l~~~~-~~~-~~~~~~ 188 (251)
T PRK10258 133 GGVVAFTTLVQGS-----------LPELHQAWQAVD--E---------RPHANRFLPPDAIEQALNGWR-YQH-HIQPIT 188 (251)
T ss_pred CeEEEEEeCCCCc-----------hHHHHHHHHHhc--c---------CCccccCCCHHHHHHHHHhCC-cee-eeeEEE
Confidence 9999999887643 112344444321 1 111223568999999998665 443 334444
Q ss_pred ec
Q 042009 184 ID 185 (262)
Q Consensus 184 ~~ 185 (262)
..
T Consensus 189 ~~ 190 (251)
T PRK10258 189 LW 190 (251)
T ss_pred EE
Confidence 33
No 19
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=95.42 E-value=0.025 Score=41.31 Aligned_cols=28 Identities=43% Similarity=0.483 Sum_probs=22.4
Q ss_pred eccCccccccCCCCccceEEcccccccc
Q 042009 20 GVAGSFYDRLFPDKSLHFVHSSSSLHWL 47 (262)
Q Consensus 20 ~vpgSFY~rlfP~~Svh~~~Ss~alHWL 47 (262)
-+-+++..--||++|+|++++..++||+
T Consensus 46 ~~~~d~~~l~~~~~sfD~v~~~~~~~~~ 73 (95)
T PF08241_consen 46 FRQGDAEDLPFPDNSFDVVFSNSVLHHL 73 (95)
T ss_dssp EEESBTTSSSS-TT-EEEEEEESHGGGS
T ss_pred heeehHHhCccccccccccccccceeec
Confidence 4446677779999999999999999998
No 20
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=95.32 E-value=0.084 Score=49.26 Aligned_cols=90 Identities=23% Similarity=0.246 Sum_probs=55.1
Q ss_pred cCCCCccceEEcccccccccCCCccccCCCCccccCCCceeecCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhccCceEE
Q 042009 29 LFPDKSLHFVHSSSSLHWLSQVPPALESNATPAALNKGKIYISKSSPQCVLDAYSLQFQNNFLIFLKSRAAEMVAGGRMV 108 (262)
Q Consensus 29 lfP~~Svh~~~Ss~alHWLS~~P~~~~~~~~s~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mv 108 (262)
+-+.+++|.++|..+|||+.. |. . +|+.=++-|+|||.||
T Consensus 183 lp~~~~FD~V~s~gvL~H~~d-p~------------------------~---------------~L~el~r~LkpGG~Lv 222 (314)
T TIGR00452 183 LHELYAFDTVFSMGVLYHRKS-PL------------------------E---------------HLKQLKHQLVIKGELV 222 (314)
T ss_pred CCCCCCcCEEEEcchhhccCC-HH------------------------H---------------HHHHHHHhcCCCCEEE
Confidence 334568999999999998532 21 1 1222267799999999
Q ss_pred EEecccCCCCCCCchhhHHHHHHHHHHHHHHHhccCChhhhcccccCcccCCHHHHHHHHhcCCceEEEEEE
Q 042009 109 LSLMGRRSIDPTTEESCYQWELLAQALMSLVTERLIEEEKLDSFNAPYYAPCPEELKMAIQKEGSFIIDRLG 180 (262)
Q Consensus 109 l~~~g~~~~~~~~~~~~~~~~~l~~al~dmv~eGli~~e~~dsfn~P~y~ps~~Ev~~~ie~~gsF~I~~le 180 (262)
+..+..+...... +...+....+.-.++.||.+++...+++.| |+..+..
T Consensus 223 letl~i~g~~~~~---------------------l~p~~ry~k~~nv~flpS~~~L~~~L~~aG-F~~V~i~ 272 (314)
T TIGR00452 223 LETLVIDGDLNTV---------------------LVPKDRYAKMKNVYFIPSVSALKNWLEKVG-FENFRIL 272 (314)
T ss_pred EEEEEecCccccc---------------------cCchHHHHhccccccCCCHHHHHHHHHHCC-CeEEEEE
Confidence 9876433211000 011112222333456789999999999998 7755444
No 21
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=95.25 E-value=0.19 Score=43.44 Aligned_cols=114 Identities=19% Similarity=0.241 Sum_probs=62.4
Q ss_pred CccccccCCCCccceEEcccccccccCCCccccCCCCccccCCCceeecCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 042009 23 GSFYDRLFPDKSLHFVHSSSSLHWLSQVPPALESNATPAALNKGKIYISKSSPQCVLDAYSLQFQNNFLIFLKSRAAEMV 102 (262)
Q Consensus 23 gSFY~rlfP~~Svh~~~Ss~alHWLS~~P~~~~~~~~s~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~ 102 (262)
+++.+..++++++|++++++++|+++..+ .+|+.-.+-|+
T Consensus 110 ~d~~~~~~~~~~~D~I~~~~~l~~~~~~~----------------------------------------~~l~~~~~~L~ 149 (239)
T PRK00216 110 GDAEALPFPDNSFDAVTIAFGLRNVPDID----------------------------------------KALREMYRVLK 149 (239)
T ss_pred cccccCCCCCCCccEEEEecccccCCCHH----------------------------------------HHHHHHHHhcc
Confidence 56666667888999999999998764311 12334456799
Q ss_pred cCceEEEEecccCCCCCCCchhhHHHHHHHHH----HHHHHHhccCChhhhcccccCcccCCHHHHHHHHhcCCceEEEE
Q 042009 103 AGGRMVLSLMGRRSIDPTTEESCYQWELLAQA----LMSLVTERLIEEEKLDSFNAPYYAPCPEELKMAIQKEGSFIIDR 178 (262)
Q Consensus 103 ~GG~mvl~~~g~~~~~~~~~~~~~~~~~l~~a----l~dmv~eGli~~e~~dsfn~P~y~ps~~Ev~~~ie~~gsF~I~~ 178 (262)
|||++++.-...+.... ....++..... ...+...+......+. +.-..+++.+|+...+++.| |++.+
T Consensus 150 ~gG~li~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~aG-f~~~~ 222 (239)
T PRK00216 150 PGGRLVILEFSKPTNPP----LKKAYDFYLFKVLPLIGKLISKNAEAYSYLA--ESIRAFPDQEELAAMLEEAG-FERVR 222 (239)
T ss_pred CCcEEEEEEecCCCchH----HHHHHHHHHHhhhHHHHHHHcCCcHHHHHHH--HHHHhCCCHHHHHHHHHhCC-Cceee
Confidence 99999877554433211 11111111110 1111111110000000 00123579999999999999 88777
Q ss_pred EEeEe
Q 042009 179 LGHFE 183 (262)
Q Consensus 179 le~~~ 183 (262)
...+.
T Consensus 223 ~~~~~ 227 (239)
T PRK00216 223 YRNLT 227 (239)
T ss_pred eeeee
Confidence 66554
No 22
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=94.88 E-value=0.25 Score=42.16 Aligned_cols=113 Identities=16% Similarity=0.194 Sum_probs=62.4
Q ss_pred CccccccCCCCccceEEcccccccccCCCccccCCCCccccCCCceeecCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 042009 23 GSFYDRLFPDKSLHFVHSSSSLHWLSQVPPALESNATPAALNKGKIYISKSSPQCVLDAYSLQFQNNFLIFLKSRAAEMV 102 (262)
Q Consensus 23 gSFY~rlfP~~Svh~~~Ss~alHWLS~~P~~~~~~~~s~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~ 102 (262)
+++.+..++++++|++++++.+|+... ...+|+.-.+-|+
T Consensus 95 ~d~~~~~~~~~~~D~i~~~~~~~~~~~----------------------------------------~~~~l~~~~~~L~ 134 (223)
T TIGR01934 95 ADAEALPFEDNSFDAVTIAFGLRNVTD----------------------------------------IQKALREMYRVLK 134 (223)
T ss_pred cchhcCCCCCCcEEEEEEeeeeCCccc----------------------------------------HHHHHHHHHHHcC
Confidence 555555578889999999888887432 1134555678899
Q ss_pred cCceEEEEecccCCCCCCCchhhHHHHHHHHHHHHHHHhccCChhhhccccc----CcccCCHHHHHHHHhcCCceEEEE
Q 042009 103 AGGRMVLSLMGRRSIDPTTEESCYQWELLAQALMSLVTERLIEEEKLDSFNA----PYYAPCPEELKMAIQKEGSFIIDR 178 (262)
Q Consensus 103 ~GG~mvl~~~g~~~~~~~~~~~~~~~~~l~~al~dmv~eGli~~e~~dsfn~----P~y~ps~~Ev~~~ie~~gsF~I~~ 178 (262)
|||++++.-...+...+ ...+++.....+.-....+ .... .+++.. ..-+++.+|++..+++.| |++..
T Consensus 135 ~gG~l~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~aG-f~~~~ 207 (223)
T TIGR01934 135 PGGRLVILEFSKPANAL----LKKFYKFYLKNVLPSIGGL-ISKN-AEAYTYLPESIRAFPSQEELAAMLKEAG-FEEVR 207 (223)
T ss_pred CCcEEEEEEecCCCchh----hHHHHHHHHHHhhhhhhhh-hcCC-chhhHHHHHHHHhCCCHHHHHHHHHHcC-Cccce
Confidence 99999976543322111 1111111111111111111 1111 111111 122579999999999998 88777
Q ss_pred EEeE
Q 042009 179 LGHF 182 (262)
Q Consensus 179 le~~ 182 (262)
.+..
T Consensus 208 ~~~~ 211 (223)
T TIGR01934 208 YRSL 211 (223)
T ss_pred eeee
Confidence 6655
No 23
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=94.57 E-value=0.039 Score=49.19 Aligned_cols=111 Identities=23% Similarity=0.318 Sum_probs=35.5
Q ss_pred CccccccCCCCccceEEcccccccccCCCccccCCCCccccCCCceeecCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 042009 23 GSFYDRLFPDKSLHFVHSSSSLHWLSQVPPALESNATPAALNKGKIYISKSSPQCVLDAYSLQFQNNFLIFLKSRAAEMV 102 (262)
Q Consensus 23 gSFY~rlfP~~Svh~~~Ss~alHWLS~~P~~~~~~~~s~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~ 102 (262)
|+.-+=-||++|+|.+.++++||-+...+.. ..| =.+=|+
T Consensus 105 ~da~~lp~~d~sfD~v~~~fglrn~~d~~~~------------------------l~E----------------~~RVLk 144 (233)
T PF01209_consen 105 GDAEDLPFPDNSFDAVTCSFGLRNFPDRERA------------------------LRE----------------MYRVLK 144 (233)
T ss_dssp -BTTB--S-TT-EEEEEEES-GGG-SSHHHH------------------------HHH----------------HHHHEE
T ss_pred cCHHHhcCCCCceeEEEHHhhHHhhCCHHHH------------------------HHH----------------HHHHcC
Confidence 4555555899999999999999986441111 111 156799
Q ss_pred cCceEEEEecccCCCCCCCchhhHHHHHHHHHHHHHHHhccCChhhhccc-c---cCcccCCHHHHHHHHhcCCceEEEE
Q 042009 103 AGGRMVLSLMGRRSIDPTTEESCYQWELLAQALMSLVTERLIEEEKLDSF-N---APYYAPCPEELKMAIQKEGSFIIDR 178 (262)
Q Consensus 103 ~GG~mvl~~~g~~~~~~~~~~~~~~~~~l~~al~dmv~eGli~~e~~dsf-n---~P~y~ps~~Ev~~~ie~~gsF~I~~ 178 (262)
|||++++.=.+++.... ...+|...-..+.=.+ -++++.+ .+.+ . .-.-+|+.+|+.+.+++.| |+..+
T Consensus 145 PGG~l~ile~~~p~~~~----~~~~~~~y~~~ilP~~-g~l~~~~-~~~Y~yL~~Si~~f~~~~~~~~~l~~~G-f~~v~ 217 (233)
T PF01209_consen 145 PGGRLVILEFSKPRNPL----LRALYKFYFKYILPLI-GRLLSGD-REAYRYLPESIRRFPSPEELKELLEEAG-FKNVE 217 (233)
T ss_dssp EEEEEEEEEEEB-SSHH----HHHHHHH----------------------------------------------------
T ss_pred CCeEEEEeeccCCCCch----hhceeeeeeccccccc-ccccccc-cccccccccccccccccccccccccccc-ccccc
Confidence 99999998888876311 1112222211111111 1233322 1222 1 1224789999999999988 77444
Q ss_pred EE
Q 042009 179 LG 180 (262)
Q Consensus 179 le 180 (262)
.+
T Consensus 218 ~~ 219 (233)
T PF01209_consen 218 YR 219 (233)
T ss_dssp --
T ss_pred cc
Confidence 33
No 24
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=94.03 E-value=0.02 Score=51.47 Aligned_cols=95 Identities=25% Similarity=0.466 Sum_probs=66.6
Q ss_pred ccccccCCCCccceEEcccccccccCCCccccCCCCccccCCCceeecCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 042009 24 SFYDRLFPDKSLHFVHSSSSLHWLSQVPPALESNATPAALNKGKIYISKSSPQCVLDAYSLQFQNNFLIFLKSRAAEMVA 103 (262)
Q Consensus 24 SFY~rlfP~~Svh~~~Ss~alHWLS~~P~~~~~~~~s~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~ 103 (262)
-|.. |-.||+|+++||.++||....|..... | ..-|+|
T Consensus 129 E~Ld--f~ens~DLiisSlslHW~NdLPg~m~~-------------c---------------------------k~~lKP 166 (325)
T KOG2940|consen 129 EFLD--FKENSVDLIISSLSLHWTNDLPGSMIQ-------------C---------------------------KLALKP 166 (325)
T ss_pred hccc--ccccchhhhhhhhhhhhhccCchHHHH-------------H---------------------------HHhcCC
Confidence 3444 889999999999999999998864321 1 345899
Q ss_pred CceEEEEecccCCCCCCCchhhHHHHH-HHHHHHHHHHhccCChhhhcccccCcccC--CHHHHHHHHhcCCceEEEEEE
Q 042009 104 GGRMVLSLMGRRSIDPTTEESCYQWEL-LAQALMSLVTERLIEEEKLDSFNAPYYAP--CPEELKMAIQKEGSFIIDRLG 180 (262)
Q Consensus 104 GG~mvl~~~g~~~~~~~~~~~~~~~~~-l~~al~dmv~eGli~~e~~dsfn~P~y~p--s~~Ev~~~ie~~gsF~I~~le 180 (262)
.|.++-.++|-+. ++++ .+--|.+|..+|=|+ |...| -..++-..+.+.| |....+.
T Consensus 167 Dg~FiasmlggdT----------LyELR~slqLAelER~GGiS---------phiSPf~qvrDiG~LL~rAG-F~m~tvD 226 (325)
T KOG2940|consen 167 DGLFIASMLGGDT----------LYELRCSLQLAELEREGGIS---------PHISPFTQVRDIGNLLTRAG-FSMLTVD 226 (325)
T ss_pred CccchhHHhcccc----------HHHHHHHhhHHHHHhccCCC---------CCcChhhhhhhhhhHHhhcC-cccceec
Confidence 9999999998432 3443 455678899999777 33333 3456666777777 6544433
No 25
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=93.29 E-value=0.17 Score=46.07 Aligned_cols=102 Identities=18% Similarity=0.239 Sum_probs=63.2
Q ss_pred CCCCccceEEcccccccccCCCccccCCCCccccCCCceeecCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhccCceEEE
Q 042009 30 FPDKSLHFVHSSSSLHWLSQVPPALESNATPAALNKGKIYISKSSPQCVLDAYSLQFQNNFLIFLKSRAAEMVAGGRMVL 109 (262)
Q Consensus 30 fP~~Svh~~~Ss~alHWLS~~P~~~~~~~~s~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl 109 (262)
||++|.|...+++.+--.-.+ +..+.+|| +=|+|||++.|
T Consensus 173 Fdd~s~D~yTiafGIRN~th~------------------------~k~l~EAY----------------RVLKpGGrf~c 212 (296)
T KOG1540|consen 173 FDDDSFDAYTIAFGIRNVTHI------------------------QKALREAY----------------RVLKPGGRFSC 212 (296)
T ss_pred CCCCcceeEEEecceecCCCH------------------------HHHHHHHH----------------HhcCCCcEEEE
Confidence 889999988888876543322 22355666 67999999998
Q ss_pred EecccCCCCCCCc-hhhHH---HHHHHHHHHHHHHhccCChhhhcccccCcccCCHHHHHHHHhcCCceEEEE
Q 042009 110 SLMGRRSIDPTTE-ESCYQ---WELLAQALMSLVTERLIEEEKLDSFNAPYYAPCPEELKMAIQKEGSFIIDR 178 (262)
Q Consensus 110 ~~~g~~~~~~~~~-~~~~~---~~~l~~al~dmv~eGli~~e~~dsfn~P~y~ps~~Ev~~~ie~~gsF~I~~ 178 (262)
.-+..-+..+... ...+. .-.+.+.+....+.+.+=-|-+.. +|+.||+...|++.| |....
T Consensus 213 LeFskv~~~~l~~fy~~ysf~VlpvlG~~iagd~~sYqYLveSI~r------fp~qe~f~~miedaG-F~~~~ 278 (296)
T KOG1540|consen 213 LEFSKVENEPLKWFYDQYSFDVLPVLGEIIAGDRKSYQYLVESIRR------FPPQEEFASMIEDAG-FSSVN 278 (296)
T ss_pred EEccccccHHHHHHHHhhhhhhhchhhHhhhhhHhhhhhHHhhhhc------CCCHHHHHHHHHHcC-Ccccc
Confidence 8887655322110 01111 223455555555555443333333 588999999999998 77554
No 26
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=93.00 E-value=0.48 Score=44.35 Aligned_cols=103 Identities=20% Similarity=0.248 Sum_probs=60.7
Q ss_pred CccccccCCCCccceEEcccccccccCCCccccCCCCccccCCCceeecCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 042009 23 GSFYDRLFPDKSLHFVHSSSSLHWLSQVPPALESNATPAALNKGKIYISKSSPQCVLDAYSLQFQNNFLIFLKSRAAEMV 102 (262)
Q Consensus 23 gSFY~rlfP~~Svh~~~Ss~alHWLS~~P~~~~~~~~s~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~ 102 (262)
+++.+=-++++++|++++..+||++.. |. .||+.=++=|+
T Consensus 187 ~dae~l~~~~~~FD~Vi~~~vLeHv~d-~~---------------------------------------~~L~~l~r~Lk 226 (322)
T PLN02396 187 TTAEKLADEGRKFDAVLSLEVIEHVAN-PA---------------------------------------EFCKSLSALTI 226 (322)
T ss_pred cCHHHhhhccCCCCEEEEhhHHHhcCC-HH---------------------------------------HHHHHHHHHcC
Confidence 444333357789999999999999665 21 12233345589
Q ss_pred cCceEEEEecccCCCCCCCchhhHHHHHH-HHHHHHHHHhccCChhhhcccccCcccCCHHHHHHHHhcCCceEEEEEEe
Q 042009 103 AGGRMVLSLMGRRSIDPTTEESCYQWELL-AQALMSLVTERLIEEEKLDSFNAPYYAPCPEELKMAIQKEGSFIIDRLGH 181 (262)
Q Consensus 103 ~GG~mvl~~~g~~~~~~~~~~~~~~~~~l-~~al~dmv~eGli~~e~~dsfn~P~y~ps~~Ev~~~ie~~gsF~I~~le~ 181 (262)
|||+++++.+.+... ......+ ..-+...+..| ......+.+++|+...+++.| |++..+.-
T Consensus 227 PGG~liist~nr~~~-------~~~~~i~~~eyi~~~lp~g---------th~~~~f~tp~eL~~lL~~aG-f~i~~~~G 289 (322)
T PLN02396 227 PNGATVLSTINRTMR-------AYASTIVGAEYILRWLPKG---------THQWSSFVTPEELSMILQRAS-VDVKEMAG 289 (322)
T ss_pred CCcEEEEEECCcCHH-------HHHHhhhhHHHHHhcCCCC---------CcCccCCCCHHHHHHHHHHcC-CeEEEEee
Confidence 999999998754320 1101110 11111111112 111223679999999999988 88877765
Q ss_pred E
Q 042009 182 F 182 (262)
Q Consensus 182 ~ 182 (262)
+
T Consensus 290 ~ 290 (322)
T PLN02396 290 F 290 (322)
T ss_pred e
Confidence 4
No 27
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=92.54 E-value=0.78 Score=40.81 Aligned_cols=70 Identities=20% Similarity=0.083 Sum_probs=40.1
Q ss_pred HHhhccCceEEEEecccCCCCCCCchhhHHHHHHHHHHHHHHHhccCChhhhccc---ccCccc-CCHHHHHHHHhcCCc
Q 042009 98 AAEMVAGGRMVLSLMGRRSIDPTTEESCYQWELLAQALMSLVTERLIEEEKLDSF---NAPYYA-PCPEELKMAIQKEGS 173 (262)
Q Consensus 98 a~EL~~GG~mvl~~~g~~~~~~~~~~~~~~~~~l~~al~dmv~eGli~~e~~dsf---n~P~y~-ps~~Ev~~~ie~~gs 173 (262)
++-|+|||.+++.=.-..++.. ..+.+...|.++...+=.+++++..+ .--... -|+++..+.+++.|
T Consensus 151 ~~~LkpGG~l~l~e~~~~~~~~-------~~~~~~~~~~~~~~~~g~s~~ei~~~~~~~~~~~~~~~~~~~~~~L~~aG- 222 (247)
T PRK15451 151 YQGLNPGGALVLSEKFSFEDAK-------VGELLFNMHHDFKRANGYSELEISQKRSMLENVMLTDSVETHKARLHKAG- 222 (247)
T ss_pred HHhcCCCCEEEEEEecCCCcch-------hHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcccCCHHHHHHHHHHcC-
Confidence 5679999999997433222211 12334445555554545555555432 001222 48999999999988
Q ss_pred eE
Q 042009 174 FI 175 (262)
Q Consensus 174 F~ 175 (262)
|+
T Consensus 223 F~ 224 (247)
T PRK15451 223 FE 224 (247)
T ss_pred ch
Confidence 54
No 28
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=91.98 E-value=1.1 Score=40.53 Aligned_cols=37 Identities=11% Similarity=0.166 Sum_probs=27.6
Q ss_pred HHHHhhhhhhhhhHHHHHhh-HHHHHHHHHHHHHHHHH
Q 042009 205 QRVAKTVRAVVESMFELHFG-KAMMDLLFARYAEMVDD 241 (262)
Q Consensus 205 ~~~a~~~RA~~ep~l~~hfg-e~I~delF~r~~~~v~~ 241 (262)
..+..++|+|.+-.=..|=| +.|.|.+-.+++..-..
T Consensus 205 ~~F~~~~rsws~~~~akek~~e~i~~~~I~e~~~~~~~ 242 (261)
T KOG3010|consen 205 EGFSGFLRSWSAYKEAKEKGLELIADIFIPEFEEAWGE 242 (261)
T ss_pred HHHHHHHhCcHHHHHHHhcChHHHHHHHHHHHHhhccc
Confidence 34778999999988888887 56677677777665443
No 29
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=91.68 E-value=0.42 Score=45.17 Aligned_cols=94 Identities=21% Similarity=0.236 Sum_probs=57.6
Q ss_pred ccCccccccCCCCccceEEcccccccccCCCccccCCCCccccCCCceeecCCCcHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042009 21 VAGSFYDRLFPDKSLHFVHSSSSLHWLSQVPPALESNATPAALNKGKIYISKSSPQCVLDAYSLQFQNNFLIFLKSRAAE 100 (262)
Q Consensus 21 vpgSFY~rlfP~~Svh~~~Ss~alHWLS~~P~~~~~~~~s~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~E 100 (262)
+.|+.-+--+|+++.|+++++.++|++.. |. ..|+.=.+-
T Consensus 165 i~gD~e~lp~~~~sFDvVIs~~~L~~~~d-~~---------------------------------------~~L~e~~rv 204 (340)
T PLN02490 165 IEGDAEDLPFPTDYADRYVSAGSIEYWPD-PQ---------------------------------------RGIKEAYRV 204 (340)
T ss_pred EeccHHhCCCCCCceeEEEEcChhhhCCC-HH---------------------------------------HHHHHHHHh
Confidence 45555555578899999999999997543 11 113333677
Q ss_pred hccCceEEEEecccCCCCCCCchhhHHHHHHHHHHHHHHHhccCChhhhcccccCcccCCHHHHHHHHhcCCceEEEEEE
Q 042009 101 MVAGGRMVLSLMGRRSIDPTTEESCYQWELLAQALMSLVTERLIEEEKLDSFNAPYYAPCPEELKMAIQKEGSFIIDRLG 180 (262)
Q Consensus 101 L~~GG~mvl~~~g~~~~~~~~~~~~~~~~~l~~al~dmv~eGli~~e~~dsfn~P~y~ps~~Ev~~~ie~~gsF~I~~le 180 (262)
|+|||++++.-...+. . | +...+.+ .-..+++.+|+.+.+++.| |+..+++
T Consensus 205 LkPGG~LvIi~~~~p~--------~--~--~~r~~~~----------------~~~~~~t~eEl~~lL~~aG-F~~V~i~ 255 (340)
T PLN02490 205 LKIGGKACLIGPVHPT--------F--W--LSRFFAD----------------VWMLFPKEEEYIEWFTKAG-FKDVKLK 255 (340)
T ss_pred cCCCcEEEEEEecCcc--------h--h--HHHHhhh----------------hhccCCCHHHHHHHHHHCC-CeEEEEE
Confidence 9999999876322111 0 0 0110111 0112478999999999988 8876666
Q ss_pred eEe
Q 042009 181 HFE 183 (262)
Q Consensus 181 ~~~ 183 (262)
...
T Consensus 256 ~i~ 258 (340)
T PLN02490 256 RIG 258 (340)
T ss_pred EcC
Confidence 543
No 30
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=91.38 E-value=1.2 Score=38.34 Aligned_cols=28 Identities=11% Similarity=0.025 Sum_probs=22.6
Q ss_pred CcccCCHHHHHHHHhcCCceEEEEEEeEe
Q 042009 155 PYYAPCPEELKMAIQKEGSFIIDRLGHFE 183 (262)
Q Consensus 155 P~y~ps~~Ev~~~ie~~gsF~I~~le~~~ 183 (262)
+.|.++.+|+...+++.| |++.+.+.+.
T Consensus 119 ~~~~~s~~~~~~~l~~~G-f~~~~~~~~~ 146 (224)
T smart00828 119 TSYLVTREEWAELLARNN-LRVVEGVDAS 146 (224)
T ss_pred ccccCCHHHHHHHHHHCC-CeEEEeEECc
Confidence 456899999999999887 8887766553
No 31
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=91.34 E-value=1.4 Score=39.50 Aligned_cols=165 Identities=13% Similarity=0.244 Sum_probs=88.2
Q ss_pred cccCCCCccceEEcccccccccCCCccccCCCCccccCCCceeecCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhccCce
Q 042009 27 DRLFPDKSLHFVHSSSSLHWLSQVPPALESNATPAALNKGKIYISKSSPQCVLDAYSLQFQNNFLIFLKSRAAEMVAGGR 106 (262)
Q Consensus 27 ~rlfP~~Svh~~~Ss~alHWLS~~P~~~~~~~~s~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~ 106 (262)
...-|....|++||+.+||||..-|.-+.- . -.+|.|||.
T Consensus 85 ~~w~p~~~~dllfaNAvlqWlpdH~~ll~r-------------------------L---------------~~~L~Pgg~ 124 (257)
T COG4106 85 RTWKPEQPTDLLFANAVLQWLPDHPELLPR-------------------------L---------------VSQLAPGGV 124 (257)
T ss_pred hhcCCCCccchhhhhhhhhhccccHHHHHH-------------------------H---------------HHhhCCCce
Confidence 346799999999999999998665443221 1 357999999
Q ss_pred EEEEecccCCCCCCCchhhHHHHHHHHHHHHHHHhccCChhhhccccc-CcccCCHHHHHHHHhcCCceEEEEEEeEeec
Q 042009 107 MVLSLMGRRSIDPTTEESCYQWELLAQALMSLVTERLIEEEKLDSFNA-PYYAPCPEELKMAIQKEGSFIIDRLGHFEID 185 (262)
Q Consensus 107 mvl~~~g~~~~~~~~~~~~~~~~~l~~al~dmv~eGli~~e~~dsfn~-P~y~ps~~Ev~~~ie~~gsF~I~~le~~~~~ 185 (262)
|-+.+++--++ + + +.++. +.++++=- +.++..+.+ ----+|+.-+-..+..-+ -+|+--++.
T Consensus 125 LAVQmPdN~de-p-s------H~~mr----~~A~~~p~-~~~l~~~~~~r~~v~s~a~Yy~lLa~~~-~rvDiW~T~--- 187 (257)
T COG4106 125 LAVQMPDNLDE-P-S------HRLMR----ETADEAPF-AQELGGRGLTRAPLPSPAAYYELLAPLA-CRVDIWHTT--- 187 (257)
T ss_pred EEEECCCccCc-h-h------HHHHH----HHHhcCch-hhhhCccccccCCCCCHHHHHHHhCccc-ceeeeeeee---
Confidence 99999864321 1 1 22222 22222211 111111111 111245666666766554 333333322
Q ss_pred CCCCcccccccccccchhHHHHHhhhhhh-hhhHHHHHhhHHHHHHHHHHHHHHHHHHHh-hcC----CceEEEEEEEEe
Q 042009 186 WDGGVEELTNTTLLPLSRGQRVAKTVRAV-VESMFELHFGKAMMDLLFARYAEMVDDYLS-KNR----AKYINLVISIIK 259 (262)
Q Consensus 186 w~~~~~~~~~d~~~~~~~a~~~a~~~RA~-~ep~l~~hfge~I~delF~r~~~~v~~~~~-~~~----~~~~~~~v~L~r 259 (262)
|... ...+..+..++++. ..|.| .-++++--..+-++|..++.+++- ... ..|.-++++-+|
T Consensus 188 ---Y~h~--------l~~a~aIvdWvkgTgLrP~L-~~L~e~~~~~FL~~Y~~~l~~aYP~~~dGr~ll~FpRlFiVA~~ 255 (257)
T COG4106 188 ---YYHQ--------LPGADAIVDWVKGTGLRPYL-DRLDEEERQRFLDRYLALLAEAYPPRADGRVLLAFPRLFIVATR 255 (257)
T ss_pred ---cccc--------CCCccchhhheeccccceec-cccCHHHHHHHHHHHHHHHHHhCCCccCCcEEeecceEEEEEec
Confidence 1111 11223344555443 22332 335566777888999998887743 222 245667777666
Q ss_pred c
Q 042009 260 K 260 (262)
Q Consensus 260 ~ 260 (262)
+
T Consensus 256 ~ 256 (257)
T COG4106 256 G 256 (257)
T ss_pred C
Confidence 5
No 32
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=91.17 E-value=1.4 Score=37.75 Aligned_cols=17 Identities=29% Similarity=0.483 Sum_probs=14.8
Q ss_pred CCccceEEccccccccc
Q 042009 32 DKSLHFVHSSSSLHWLS 48 (262)
Q Consensus 32 ~~Svh~~~Ss~alHWLS 48 (262)
+.++|+++|+.++||+.
T Consensus 93 ~~~fD~I~~~~~~~~~~ 109 (197)
T PRK11207 93 DGEYDFILSTVVLMFLE 109 (197)
T ss_pred CCCcCEEEEecchhhCC
Confidence 46799999999999974
No 33
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=90.03 E-value=1.1 Score=38.05 Aligned_cols=26 Identities=8% Similarity=-0.115 Sum_probs=23.0
Q ss_pred cccCCHHHHHHHHhcCCceEEEEEEeE
Q 042009 156 YYAPCPEELKMAIQKEGSFIIDRLGHF 182 (262)
Q Consensus 156 ~y~ps~~Ev~~~ie~~gsF~I~~le~~ 182 (262)
..+++.+|+.+.+++.| |+|.....+
T Consensus 143 ~~~~s~~~~~~ll~~~G-f~v~~~~~~ 168 (194)
T TIGR02081 143 IHFCTIADFEDLCGELN-LRILDRAAF 168 (194)
T ss_pred cccCcHHHHHHHHHHCC-CEEEEEEEe
Confidence 56789999999999999 999888876
No 34
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=90.00 E-value=2.1 Score=36.62 Aligned_cols=22 Identities=9% Similarity=0.137 Sum_probs=17.0
Q ss_pred cccCCHHHHHHHHhcCCceEEEEEE
Q 042009 156 YYAPCPEELKMAIQKEGSFIIDRLG 180 (262)
Q Consensus 156 ~y~ps~~Ev~~~ie~~gsF~I~~le 180 (262)
-|..+++|+++.+.. |+|.+.+
T Consensus 147 ~~~~~~~el~~~f~~---~~~~~~~ 168 (195)
T TIGR00477 147 SFTFKEDELRQYYAD---WELLKYN 168 (195)
T ss_pred CccCCHHHHHHHhCC---CeEEEee
Confidence 367899999998863 8877666
No 35
>PRK06922 hypothetical protein; Provisional
Probab=89.88 E-value=0.48 Score=48.47 Aligned_cols=54 Identities=26% Similarity=0.273 Sum_probs=39.2
Q ss_pred cCCCCccceEEcccccccc-cCCCccccCCCCccccCCCceeecCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhccCceE
Q 042009 29 LFPDKSLHFVHSSSSLHWL-SQVPPALESNATPAALNKGKIYISKSSPQCVLDAYSLQFQNNFLIFLKSRAAEMVAGGRM 107 (262)
Q Consensus 29 lfP~~Svh~~~Ss~alHWL-S~~P~~~~~~~~s~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~m 107 (262)
.||++++|++++++++||+ +.+|..-. .|| .+|...+|+.=.+-|+|||++
T Consensus 482 ~fedeSFDvVVsn~vLH~L~syIp~~g~------~f~----------------------~edl~kiLreI~RVLKPGGrL 533 (677)
T PRK06922 482 SFEKESVDTIVYSSILHELFSYIEYEGK------KFN----------------------HEVIKKGLQSAYEVLKPGGRI 533 (677)
T ss_pred ccCCCCEEEEEEchHHHhhhhhcccccc------ccc----------------------HHHHHHHHHHHHHHcCCCcEE
Confidence 4789999999999999975 45552210 011 246667777778899999999
Q ss_pred EEE
Q 042009 108 VLS 110 (262)
Q Consensus 108 vl~ 110 (262)
++.
T Consensus 534 II~ 536 (677)
T PRK06922 534 IIR 536 (677)
T ss_pred EEE
Confidence 996
No 36
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=89.76 E-value=11 Score=36.10 Aligned_cols=67 Identities=13% Similarity=0.303 Sum_probs=43.4
Q ss_pred HHHHHHHHHHhhccCceEEEEecccCCCCCCCchhhHHHHHHHHHHHHHHHhccCChhhhcccccC-cccCCHHHHHHHH
Q 042009 90 FLIFLKSRAAEMVAGGRMVLSLMGRRSIDPTTEESCYQWELLAQALMSLVTERLIEEEKLDSFNAP-YYAPCPEELKMAI 168 (262)
Q Consensus 90 ~~~FL~~Ra~EL~~GG~mvl~~~g~~~~~~~~~~~~~~~~~l~~al~dmv~eGli~~e~~dsfn~P-~y~ps~~Ev~~~i 168 (262)
+..+++.=.+=|+|||++++...+.+.... . ...-++.+..| -+.|+++++....
T Consensus 246 ~~~~l~~i~r~LkpGG~lvl~~i~~~~~~~--~----------------------~~~~i~~yifp~g~lps~~~i~~~~ 301 (383)
T PRK11705 246 YRTYFEVVRRCLKPDGLFLLHTIGSNKTDT--N----------------------VDPWINKYIFPNGCLPSVRQIAQAS 301 (383)
T ss_pred HHHHHHHHHHHcCCCcEEEEEEccCCCCCC--C----------------------CCCCceeeecCCCcCCCHHHHHHHH
Confidence 334455556789999999999887654211 0 01123345667 3789999999987
Q ss_pred hcCCceEEEEEEeE
Q 042009 169 QKEGSFIIDRLGHF 182 (262)
Q Consensus 169 e~~gsF~I~~le~~ 182 (262)
+. | |+|..++.+
T Consensus 302 ~~-~-~~v~d~~~~ 313 (383)
T PRK11705 302 EG-L-FVMEDWHNF 313 (383)
T ss_pred HC-C-cEEEEEecC
Confidence 73 4 887776643
No 37
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=88.61 E-value=8.9 Score=34.96 Aligned_cols=75 Identities=21% Similarity=0.386 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHhhccCceEEEEecccCCCCCCCchhhHHHHHHHHHHHHHHHhccCChhhhcccccCc-ccCCHHHHHH
Q 042009 88 NNFLIFLKSRAAEMVAGGRMVLSLMGRRSIDPTTEESCYQWELLAQALMSLVTERLIEEEKLDSFNAPY-YAPCPEELKM 166 (262)
Q Consensus 88 ~D~~~FL~~Ra~EL~~GG~mvl~~~g~~~~~~~~~~~~~~~~~l~~al~dmv~eGli~~e~~dsfn~P~-y~ps~~Ev~~ 166 (262)
+++..|++.=.+=|+|||++++...+..+... .. +.-.+-+-+....+|- +.||.+|+..
T Consensus 143 ~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~---------~~----------~~~~~~~~i~kyiFPgg~lps~~~~~~ 203 (273)
T PF02353_consen 143 KNYPAFFRKISRLLKPGGRLVLQTITHRDPPY---------HA----------ERRSSSDFIRKYIFPGGYLPSLSEILR 203 (273)
T ss_dssp GGHHHHHHHHHHHSETTEEEEEEEEEE--HHH---------HH----------CTTCCCHHHHHHTSTTS---BHHHHHH
T ss_pred hHHHHHHHHHHHhcCCCcEEEEEecccccccc---------hh----------hcCCCceEEEEeeCCCCCCCCHHHHHH
Confidence 45666777778889999999999887654210 00 0000001222344454 6789999999
Q ss_pred HHhcCCceEEEEEEeE
Q 042009 167 AIQKEGSFIIDRLGHF 182 (262)
Q Consensus 167 ~ie~~gsF~I~~le~~ 182 (262)
.+++.| |+|.+.+.+
T Consensus 204 ~~~~~~-l~v~~~~~~ 218 (273)
T PF02353_consen 204 AAEDAG-LEVEDVENL 218 (273)
T ss_dssp HHHHTT--EEEEEEE-
T ss_pred HHhcCC-EEEEEEEEc
Confidence 888776 887766543
No 38
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=87.82 E-value=2.8 Score=38.16 Aligned_cols=76 Identities=18% Similarity=0.217 Sum_probs=49.7
Q ss_pred CCccceEEcccccccccCCCccccCCCCccccCCCceeecCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhccCceEEEEe
Q 042009 32 DKSLHFVHSSSSLHWLSQVPPALESNATPAALNKGKIYISKSSPQCVLDAYSLQFQNNFLIFLKSRAAEMVAGGRMVLSL 111 (262)
Q Consensus 32 ~~Svh~~~Ss~alHWLS~~P~~~~~~~~s~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl~~ 111 (262)
++++|+++|+.+||++.. + ++..+|+.=.+=|+|||++++..
T Consensus 182 ~~~fD~I~~~~vl~~l~~--~------------------------------------~~~~~l~~~~~~LkpgG~~l~v~ 223 (287)
T PRK12335 182 QEEYDFILSTVVLMFLNR--E------------------------------------RIPAIIKNMQEHTNPGGYNLIVC 223 (287)
T ss_pred cCCccEEEEcchhhhCCH--H------------------------------------HHHHHHHHHHHhcCCCcEEEEEE
Confidence 678999999999998742 1 22334444467799999977654
Q ss_pred cccCCCCCCCchhhHHHHHHHHHHHHHHHhccCChhhhcccccC-cccCCHHHHHHHHhcCCceEEEEEE
Q 042009 112 MGRRSIDPTTEESCYQWELLAQALMSLVTERLIEEEKLDSFNAP-YYAPCPEELKMAIQKEGSFIIDRLG 180 (262)
Q Consensus 112 ~g~~~~~~~~~~~~~~~~~l~~al~dmv~eGli~~e~~dsfn~P-~y~ps~~Ev~~~ie~~gsF~I~~le 180 (262)
....+..+ ...| .+..+.+|+++.+.. |+|.+.+
T Consensus 224 ~~~~~~~~--------------------------------~~~p~~~~~~~~el~~~~~~---~~i~~~~ 258 (287)
T PRK12335 224 AMDTEDYP--------------------------------CPMPFSFTFKEGELKDYYQD---WEIVKYN 258 (287)
T ss_pred ecccccCC--------------------------------CCCCCCcccCHHHHHHHhCC---CEEEEEe
Confidence 33222110 1123 456789999999874 8887764
No 39
>PRK06202 hypothetical protein; Provisional
Probab=86.41 E-value=4.4 Score=35.38 Aligned_cols=28 Identities=21% Similarity=0.259 Sum_probs=22.3
Q ss_pred cccCCHHHHHHHHhcCCceEEEEEEeEeec
Q 042009 156 YYAPCPEELKMAIQKEGSFIIDRLGHFEID 185 (262)
Q Consensus 156 ~y~ps~~Ev~~~ie~~gsF~I~~le~~~~~ 185 (262)
.-+++.+|+.+.+++ | |+|...-.|...
T Consensus 199 ~~~~~~~el~~ll~~-G-f~~~~~~~~~~~ 226 (232)
T PRK06202 199 RRSYTPAELAALAPQ-G-WRVERQWPFRYL 226 (232)
T ss_pred HhhcCHHHHHHHhhC-C-CeEEeccceeeE
Confidence 457899999999998 6 998877766544
No 40
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=84.63 E-value=33 Score=31.68 Aligned_cols=119 Identities=20% Similarity=0.249 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCceEEEEecccCCCCCCCchhhHHHHHHHHHHHHHHHhccCChhhhcccccC-ccc
Q 042009 80 DAYSLQFQNNFLIFLKSRAAEMVAGGRMVLSLMGRRSIDPTTEESCYQWELLAQALMSLVTERLIEEEKLDSFNAP-YYA 158 (262)
Q Consensus 80 ~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl~~~g~~~~~~~~~~~~~~~~~l~~al~dmv~eGli~~e~~dsfn~P-~y~ 158 (262)
.+|..-..+.+..|++.=.+=|+|||+|++..++.+..... . ...-++...+| -+.
T Consensus 145 gmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~-~----------------------~~~~i~~yiFPgG~l 201 (283)
T COG2230 145 GMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPDQEFR-R----------------------FPDFIDKYIFPGGEL 201 (283)
T ss_pred hhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCCcccc-c----------------------chHHHHHhCCCCCcC
Confidence 44555567788899999999999999999998887653211 0 00111223333 467
Q ss_pred CCHHHHHHHHhcCCceEEEEEEeEeecCCCCcccccccccccchhHHHHHhhhhhhhhhHHHHHhhH--HHHHHHHHH-H
Q 042009 159 PCPEELKMAIQKEGSFIIDRLGHFEIDWDGGVEELTNTTLLPLSRGQRVAKTVRAVVESMFELHFGK--AMMDLLFAR-Y 235 (262)
Q Consensus 159 ps~~Ev~~~ie~~gsF~I~~le~~~~~w~~~~~~~~~d~~~~~~~a~~~a~~~RA~~ep~l~~hfge--~I~delF~r-~ 235 (262)
||..++...+++.| |.+...+.+ +..++.+++.|-+-+ .++..+ ++++|-|.| |
T Consensus 202 Ps~~~i~~~~~~~~-~~v~~~~~~---------------------~~hYa~Tl~~W~~~f-~~~~~~a~~~~~e~~~r~w 258 (283)
T COG2230 202 PSISEILELASEAG-FVVLDVESL---------------------RPHYARTLRLWRERF-EANRDEAIALYDERFYRMW 258 (283)
T ss_pred CCHHHHHHHHHhcC-cEEehHhhh---------------------cHHHHHHHHHHHHHH-HHHHHHHHHHhhHHHHHHH
Confidence 89999999988887 665444433 334455666665543 334432 345555555 5
Q ss_pred HHHHHHHHh
Q 042009 236 AEMVDDYLS 244 (262)
Q Consensus 236 ~~~v~~~~~ 244 (262)
...++.--.
T Consensus 259 ~~yl~~~~~ 267 (283)
T COG2230 259 ELYLAACAA 267 (283)
T ss_pred HHHHHHHHH
Confidence 555554433
No 41
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=82.59 E-value=1.6 Score=42.52 Aligned_cols=43 Identities=19% Similarity=0.260 Sum_probs=32.6
Q ss_pred CCCCccceEEcccccccccCCCccccCCCCccccCCCceeecCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhccCceEEE
Q 042009 30 FPDKSLHFVHSSSSLHWLSQVPPALESNATPAALNKGKIYISKSSPQCVLDAYSLQFQNNFLIFLKSRAAEMVAGGRMVL 109 (262)
Q Consensus 30 fP~~Svh~~~Ss~alHWLS~~P~~~~~~~~s~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl 109 (262)
+|++++|+++|..++||++. + ++..+|+.-.+=|+|||+|++
T Consensus 99 ~~~~~fD~I~~~~~l~~l~~-~-------------------------------------~~~~~l~~~~r~Lk~gG~l~~ 140 (475)
T PLN02336 99 ISDGSVDLIFSNWLLMYLSD-K-------------------------------------EVENLAERMVKWLKVGGYIFF 140 (475)
T ss_pred CCCCCEEEEehhhhHHhCCH-H-------------------------------------HHHHHHHHHHHhcCCCeEEEE
Confidence 78899999999999999743 0 123345555677999999987
Q ss_pred E
Q 042009 110 S 110 (262)
Q Consensus 110 ~ 110 (262)
.
T Consensus 141 ~ 141 (475)
T PLN02336 141 R 141 (475)
T ss_pred E
Confidence 5
No 42
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=80.87 E-value=2.1 Score=42.38 Aligned_cols=21 Identities=33% Similarity=0.722 Sum_probs=17.6
Q ss_pred cCCCCccceEEcccccc-cccC
Q 042009 29 LFPDKSLHFVHSSSSLH-WLSQ 49 (262)
Q Consensus 29 lfP~~Svh~~~Ss~alH-WLS~ 49 (262)
-||++++|++||+-|+. |.+.
T Consensus 176 Pfp~~~fDmvHcsrc~i~W~~~ 197 (506)
T PF03141_consen 176 PFPSNAFDMVHCSRCLIPWHPN 197 (506)
T ss_pred cCCccchhhhhcccccccchhc
Confidence 49999999999999986 6444
No 43
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=79.75 E-value=1.8 Score=32.20 Aligned_cols=15 Identities=40% Similarity=0.569 Sum_probs=9.0
Q ss_pred CccceEEcccccccc
Q 042009 33 KSLHFVHSSSSLHWL 47 (262)
Q Consensus 33 ~Svh~~~Ss~alHWL 47 (262)
++.|+++++.+|||+
T Consensus 65 ~~fD~V~~~~vl~~l 79 (99)
T PF08242_consen 65 ESFDLVVASNVLHHL 79 (99)
T ss_dssp ---SEEEEE-TTS--
T ss_pred cccceehhhhhHhhh
Confidence 899999999999998
No 44
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=78.03 E-value=4.5 Score=37.12 Aligned_cols=77 Identities=19% Similarity=0.272 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHhhccCceEEEEecccCCCCCCCchhhHHHHHHHHHHHHHHHhccCChhhhcccccCcccCCHHHHHH
Q 042009 87 QNNFLIFLKSRAAEMVAGGRMVLSLMGRRSIDPTTEESCYQWELLAQALMSLVTERLIEEEKLDSFNAPYYAPCPEELKM 166 (262)
Q Consensus 87 ~~D~~~FL~~Ra~EL~~GG~mvl~~~g~~~~~~~~~~~~~~~~~l~~al~dmv~eGli~~e~~dsfn~P~y~ps~~Ev~~ 166 (262)
-+|...||.+=++=|+|||+++++-.-|.-..-... + .+.+.+...|-.|.-.-| -+.+++|+..
T Consensus 171 V~dp~~~l~~l~~~lkP~G~lfittinrt~lS~~~~----i--~~~E~vl~ivp~Gth~~e---------kfi~p~e~~~ 235 (282)
T KOG1270|consen 171 VKDPQEFLNCLSALLKPNGRLFITTINRTILSFAGT----I--FLAEIVLRIVPKGTHTWE---------KFINPEELTS 235 (282)
T ss_pred HhCHHHHHHHHHHHhCCCCceEeeehhhhHHHhhcc----c--cHHHHHHHhcCCCCcCHH---------HcCCHHHHHH
Confidence 379999999999999999999999887643211010 1 123333336767755544 4689999999
Q ss_pred HHhcCCceEEEEE
Q 042009 167 AIQKEGSFIIDRL 179 (262)
Q Consensus 167 ~ie~~gsF~I~~l 179 (262)
+++.++ +.++.+
T Consensus 236 ~l~~~~-~~v~~v 247 (282)
T KOG1270|consen 236 ILNANG-AQVNDV 247 (282)
T ss_pred HHHhcC-cchhhh
Confidence 999885 555443
No 45
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=75.83 E-value=28 Score=31.66 Aligned_cols=26 Identities=23% Similarity=0.387 Sum_probs=19.4
Q ss_pred EeeccCccccccCCCCccceEEcccccc
Q 042009 18 ISGVAGSFYDRLFPDKSLHFVHSSSSLH 45 (262)
Q Consensus 18 ~~~vpgSFY~rlfP~~Svh~~~Ss~alH 45 (262)
+..++|+|+..-+|. -|+++.+..+|
T Consensus 201 v~~~~~d~~~~~~~~--~D~v~~~~~lh 226 (306)
T TIGR02716 201 MRGIAVDIYKESYPE--ADAVLFCRILY 226 (306)
T ss_pred EEEEecCccCCCCCC--CCEEEeEhhhh
Confidence 455778999766676 38888888877
No 46
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=74.23 E-value=2.2 Score=39.45 Aligned_cols=55 Identities=16% Similarity=0.209 Sum_probs=40.3
Q ss_pred ccCCCCccceEEcccccccccCCCccccCCCCccccCCCceeecCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhccCceE
Q 042009 28 RLFPDKSLHFVHSSSSLHWLSQVPPALESNATPAALNKGKIYISKSSPQCVLDAYSLQFQNNFLIFLKSRAAEMVAGGRM 107 (262)
Q Consensus 28 rlfP~~Svh~~~Ss~alHWLS~~P~~~~~~~~s~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~m 107 (262)
-.+++.|+|.+.|...+||||.-- .+..+.+-+ .+.++|||.+
T Consensus 97 ~p~~~~s~d~~lsiavihhlsT~~----------------------RR~~~l~e~---------------~r~lrpgg~~ 139 (293)
T KOG1331|consen 97 LPFREESFDAALSIAVIHHLSTRE----------------------RRERALEEL---------------LRVLRPGGNA 139 (293)
T ss_pred CCCCCCccccchhhhhhhhhhhHH----------------------HHHHHHHHH---------------HHHhcCCCce
Confidence 357899999999999999998711 122232222 7899999999
Q ss_pred EEEecccCCCCC
Q 042009 108 VLSLMGRRSIDP 119 (262)
Q Consensus 108 vl~~~g~~~~~~ 119 (262)
.+..-+......
T Consensus 140 lvyvwa~~q~~~ 151 (293)
T KOG1331|consen 140 LVYVWALEQHQS 151 (293)
T ss_pred EEEEehhhccCc
Confidence 999888755443
No 47
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=73.07 E-value=16 Score=31.66 Aligned_cols=75 Identities=17% Similarity=0.230 Sum_probs=41.5
Q ss_pred HHHHHHHHHhhccCceEEEEecccCCCCCCCchhhHHHHHHHHHHHHHHHhccCChhhhcccccCcccCCHHHHHHHHhc
Q 042009 91 LIFLKSRAAEMVAGGRMVLSLMGRRSIDPTTEESCYQWELLAQALMSLVTERLIEEEKLDSFNAPYYAPCPEELKMAIQK 170 (262)
Q Consensus 91 ~~FL~~Ra~EL~~GG~mvl~~~g~~~~~~~~~~~~~~~~~l~~al~dmv~eGli~~e~~dsfn~P~y~ps~~Ev~~~ie~ 170 (262)
..+|+.-.+=|+|||+|++...++... ........ .+.+..++ ... ......+.+++|+.+.+++
T Consensus 131 ~~~l~~~~~~L~~gG~l~v~~~~~~~~-------~~~~~~~~---~~~~~~~~-~~~----~~~~~~~~~~~~~~~~l~~ 195 (233)
T PRK05134 131 ASFVRACAKLVKPGGLVFFSTLNRNLK-------SYLLAIVG---AEYVLRML-PKG----THDYKKFIKPSELAAWLRQ 195 (233)
T ss_pred HHHHHHHHHHcCCCcEEEEEecCCChH-------HHHHHHhh---HHHHhhhc-Ccc----cCchhhcCCHHHHHHHHHH
Confidence 345666677789999999887653221 01111111 11111111 110 1112345689999999998
Q ss_pred CCceEEEEEEe
Q 042009 171 EGSFIIDRLGH 181 (262)
Q Consensus 171 ~gsF~I~~le~ 181 (262)
.| |++.....
T Consensus 196 ~G-f~~v~~~~ 205 (233)
T PRK05134 196 AG-LEVQDITG 205 (233)
T ss_pred CC-CeEeeeee
Confidence 88 88776653
No 48
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=72.66 E-value=11 Score=32.71 Aligned_cols=55 Identities=15% Similarity=0.158 Sum_probs=35.4
Q ss_pred CCCCccceEEcccccccccCCCccccCCCCccccCCCceeecCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhccCceEEE
Q 042009 30 FPDKSLHFVHSSSSLHWLSQVPPALESNATPAALNKGKIYISKSSPQCVLDAYSLQFQNNFLIFLKSRAAEMVAGGRMVL 109 (262)
Q Consensus 30 fP~~Svh~~~Ss~alHWLS~~P~~~~~~~~s~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl 109 (262)
++..++|+++|..+.||... |. .| . ..+ .......|+.=.+-|+|||++++
T Consensus 113 ~~~~~~D~V~S~~~~~~~g~-~~--~d-------------------~------~~~-~~~~~~~L~~~~~~LkpGG~~vi 163 (209)
T PRK11188 113 VGDSKVQVVMSDMAPNMSGT-PA--VD-------------------I------PRA-MYLVELALDMCRDVLAPGGSFVV 163 (209)
T ss_pred hCCCCCCEEecCCCCccCCC-hH--HH-------------------H------HHH-HHHHHHHHHHHHHHcCCCCEEEE
Confidence 67889999999999999332 11 11 0 000 01134566666788999999999
Q ss_pred Eecc
Q 042009 110 SLMG 113 (262)
Q Consensus 110 ~~~g 113 (262)
....
T Consensus 164 ~~~~ 167 (209)
T PRK11188 164 KVFQ 167 (209)
T ss_pred EEec
Confidence 6654
No 49
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=70.50 E-value=3.1 Score=37.23 Aligned_cols=26 Identities=15% Similarity=0.179 Sum_probs=19.8
Q ss_pred cCccccccCCCCccceEEcccccccc
Q 042009 22 AGSFYDRLFPDKSLHFVHSSSSLHWL 47 (262)
Q Consensus 22 pgSFY~rlfP~~Svh~~~Ss~alHWL 47 (262)
.|.+-.--+|++++|+++|..++||.
T Consensus 134 ~~d~~~l~~~~~~fD~Vi~~~v~~~~ 159 (272)
T PRK11873 134 LGEIEALPVADNSVDVIISNCVINLS 159 (272)
T ss_pred EcchhhCCCCCCceeEEEEcCcccCC
Confidence 35554434678899999999999984
No 50
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=69.92 E-value=6 Score=35.71 Aligned_cols=21 Identities=10% Similarity=0.230 Sum_probs=17.1
Q ss_pred cCCCCccceEEcccccccccC
Q 042009 29 LFPDKSLHFVHSSSSLHWLSQ 49 (262)
Q Consensus 29 lfP~~Svh~~~Ss~alHWLS~ 49 (262)
-+|.+++|+++|.+.|||++.
T Consensus 198 ~~~~~~fD~I~crnvl~yf~~ 218 (264)
T smart00138 198 SPPLGDFDLIFCRNVLIYFDE 218 (264)
T ss_pred CCccCCCCEEEechhHHhCCH
Confidence 346889999999999998753
No 51
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=68.22 E-value=11 Score=34.06 Aligned_cols=59 Identities=22% Similarity=0.331 Sum_probs=44.1
Q ss_pred cccCCCCccceEEcccccccccCCCccccCCCCccccCCCceeecCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhccCce
Q 042009 27 DRLFPDKSLHFVHSSSSLHWLSQVPPALESNATPAALNKGKIYISKSSPQCVLDAYSLQFQNNFLIFLKSRAAEMVAGGR 106 (262)
Q Consensus 27 ~rlfP~~Svh~~~Ss~alHWLS~~P~~~~~~~~s~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~ 106 (262)
+=-|+++++|-++|-.|++||=..-+.. ++ =++.+..|+..=..=|++|++
T Consensus 105 GlpfrpGtFDg~ISISAvQWLcnA~~s~------------~~-----------------P~~Rl~~FF~tLy~~l~rg~r 155 (270)
T KOG1541|consen 105 GLPFRPGTFDGVISISAVQWLCNADKSL------------HV-----------------PKKRLLRFFGTLYSCLKRGAR 155 (270)
T ss_pred CCCCCCCccceEEEeeeeeeecccCccc------------cC-----------------hHHHHHHHhhhhhhhhccCce
Confidence 4458999999999999999965533221 11 145677788877888999999
Q ss_pred EEEEeccc
Q 042009 107 MVLSLMGR 114 (262)
Q Consensus 107 mvl~~~g~ 114 (262)
-|+.+-=.
T Consensus 156 aV~QfYpe 163 (270)
T KOG1541|consen 156 AVLQFYPE 163 (270)
T ss_pred eEEEeccc
Confidence 99998643
No 52
>KOG0451 consensus Predicted 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism]
Probab=67.75 E-value=12 Score=37.89 Aligned_cols=72 Identities=25% Similarity=0.389 Sum_probs=45.0
Q ss_pred eeecCCCcHHHHHH------HHHHHHHHHHHHHHHHHHhhccCceEEEEecccCCCC-CCCchhhHHHHHHH-------H
Q 042009 68 IYISKSSPQCVLDA------YSLQFQNNFLIFLKSRAAEMVAGGRMVLSLMGRRSID-PTTEESCYQWELLA-------Q 133 (262)
Q Consensus 68 i~~~~~s~~~v~~a------y~~Q~~~D~~~FL~~Ra~EL~~GG~mvl~~~g~~~~~-~~~~~~~~~~~~l~-------~ 133 (262)
||+.+.+|++|.+| |++||+||.-.=|.|=-+ -|.++-+ |.. ++-.||..+. .
T Consensus 390 iHVNGD~PEevvraTrLAf~Yqr~FRKDvfIdL~CfRr------------wgHnelddp~f-tspvmyk~v~aReSvPdl 456 (913)
T KOG0451|consen 390 IHVNGDDPEEVVRATRLAFRYQREFRKDVFIDLNCFRR------------WGHNELDDPTF-TSPVMYKEVEARESVPDL 456 (913)
T ss_pred EEeCCCCHHHHHHHHHHHHHHHHHhhhhheeehHHHHH------------hccccccCccc-cChhHHHHHHhhhcccHH
Confidence 67888888888774 899999996544444222 3443332 221 1223444332 2
Q ss_pred HHHHHHHhccCChhhhccc
Q 042009 134 ALMSLVTERLIEEEKLDSF 152 (262)
Q Consensus 134 al~dmv~eGli~~e~~dsf 152 (262)
-++.|+++|++++|++-.+
T Consensus 457 ya~~L~~eg~~tee~vkE~ 475 (913)
T KOG0451|consen 457 YAQQLAKEGVLTEEKVKEM 475 (913)
T ss_pred HHHHHHhcccccHHHHHHH
Confidence 3567889999999987654
No 53
>cd08788 CARD_NOD2_2_CARD15 Caspase activation and recruitment domain of NOD2, repeat 2. Caspase activation and recruitment domain (CARD) similar to that found in human NOD2 (CARD15), repeat 2. NOD2 is a member of the Nod-like receptor (NLR) family, which plays a central role in the innate immune response. NLRs typically contain an N-terminal effector domain, a central nucleotide-binding domain and a C-terminal ligand-binding region of several leucine-rich repeats (LRRs). In NOD2, as well as NOD1, the N-terminal effector domain is a CARD. NOD2 contains two N-terminal CARD repeats. Mutations in NOD2 have been associated with Crohns disease and Blau syndrome. Nod2-CARDs have been shown to interact with the CARD domain of the downstream effector RICK (RIP2, CARDIAK), a serine/threonine kinase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are pr
Probab=65.69 E-value=7.1 Score=29.32 Aligned_cols=42 Identities=17% Similarity=0.268 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHhccCChhhhcccccCcccCCHHHHHHHHh
Q 042009 127 QWELLAQALMSLVTERLIEEEKLDSFNAPYYAPCPEELKMAIQ 169 (262)
Q Consensus 127 ~~~~l~~al~dmv~eGli~~e~~dsfn~P~y~ps~~Ev~~~ie 169 (262)
+...+..+|+.|-..|.|+++|-|..-.|.+.|+. ..+.+|+
T Consensus 12 l~~~V~~~Ld~ll~~G~is~~Ecd~Ir~p~~T~sq-qARrLLD 53 (81)
T cd08788 12 LQHHVDGALELLLTRGFFSSYDCDEIRLPIFTPSQ-QARRLLD 53 (81)
T ss_pred HHHHHHHHHHHHHHcCCccHhhcchhhcCCCChHH-HHHHHHH
Confidence 45678899999999999999999999999999963 4455555
No 54
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=64.88 E-value=34 Score=29.32 Aligned_cols=75 Identities=20% Similarity=0.141 Sum_probs=45.2
Q ss_pred ccccCCCCccceEEcccccccccCCCccccCCCCccccCCCceeecCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhccCc
Q 042009 26 YDRLFPDKSLHFVHSSSSLHWLSQVPPALESNATPAALNKGKIYISKSSPQCVLDAYSLQFQNNFLIFLKSRAAEMVAGG 105 (262)
Q Consensus 26 Y~rlfP~~Svh~~~Ss~alHWLS~~P~~~~~~~~s~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG 105 (262)
+.+.+|++++|.++++++.+|... +.. +..+ +...||+.=++-|+|||
T Consensus 103 l~~~~~~~~~D~V~~~~~~p~~~~-~~~-----------~~~~--------------------~~~~~l~~i~~~LkpgG 150 (202)
T PRK00121 103 LLDMFPDGSLDRIYLNFPDPWPKK-RHH-----------KRRL--------------------VQPEFLALYARKLKPGG 150 (202)
T ss_pred HHHHcCccccceEEEECCCCCCCc-ccc-----------cccc--------------------CCHHHHHHHHHHcCCCC
Confidence 345588999999999887777543 111 0011 11223333367789999
Q ss_pred eEEEEecccCCCCCCCchhhHHHHHHHHHHHHHHHhccCCh
Q 042009 106 RMVLSLMGRRSIDPTTEESCYQWELLAQALMSLVTERLIEE 146 (262)
Q Consensus 106 ~mvl~~~g~~~~~~~~~~~~~~~~~l~~al~dmv~eGli~~ 146 (262)
++++.... .+.+...+..|...|+-.+
T Consensus 151 ~l~i~~~~--------------~~~~~~~~~~~~~~g~~~~ 177 (202)
T PRK00121 151 EIHFATDW--------------EGYAEYMLEVLSAEGGFLV 177 (202)
T ss_pred EEEEEcCC--------------HHHHHHHHHHHHhCccccc
Confidence 99987532 2345556666666776443
No 55
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=63.89 E-value=14 Score=33.45 Aligned_cols=38 Identities=11% Similarity=0.137 Sum_probs=31.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhhccCceEEEEec
Q 042009 75 PQCVLDAYSLQFQNNFLIFLKSRAAEMVAGGRMVLSLM 112 (262)
Q Consensus 75 ~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl~~~ 112 (262)
+.+.++....+..-++..+++.=++=|+|||++.++..
T Consensus 134 ~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r 171 (248)
T COG4123 134 ENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHR 171 (248)
T ss_pred cChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEec
Confidence 34456666778888999999999999999999988854
No 56
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=63.79 E-value=49 Score=28.15 Aligned_cols=80 Identities=15% Similarity=0.243 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHhhccCceEEEEecccCCCCCCCchhhHHHHHHHHHHHHHHHhccCChhhhcccccCcccCCHHHHHHH
Q 042009 88 NNFLIFLKSRAAEMVAGGRMVLSLMGRRSIDPTTEESCYQWELLAQALMSLVTERLIEEEKLDSFNAPYYAPCPEELKMA 167 (262)
Q Consensus 88 ~D~~~FL~~Ra~EL~~GG~mvl~~~g~~~~~~~~~~~~~~~~~l~~al~dmv~eGli~~e~~dsfn~P~y~ps~~Ev~~~ 167 (262)
.|...+|+.-.+=|+|||.+++....++. .......+. .++. .+.+... ......+.+.+++.+.
T Consensus 126 ~~~~~~l~~~~~~L~~gG~l~i~~~~~~~-------~~~~~~~~~---~~~~-~~~~~~~----~~~~~~~~~~~~l~~~ 190 (224)
T TIGR01983 126 PDPQAFIRACAQLLKPGGILFFSTINRTP-------KSYLLAIVG---AEYI-LRIVPKG----THDWEKFIKPSELTSW 190 (224)
T ss_pred CCHHHHHHHHHHhcCCCcEEEEEecCCCc-------hHHHHHHHh---hhhh-hhcCCCC----cCChhhcCCHHHHHHH
Confidence 34556677777789999999877554321 111111111 0111 1111111 0011124588999999
Q ss_pred HhcCCceEEEEEEeEe
Q 042009 168 IQKEGSFIIDRLGHFE 183 (262)
Q Consensus 168 ie~~gsF~I~~le~~~ 183 (262)
+++.| |+|..+..+.
T Consensus 191 l~~~G-~~i~~~~~~~ 205 (224)
T TIGR01983 191 LESAG-LRVKDVKGLV 205 (224)
T ss_pred HHHcC-CeeeeeeeEE
Confidence 99877 9988777543
No 57
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=63.60 E-value=7.8 Score=34.45 Aligned_cols=96 Identities=17% Similarity=0.321 Sum_probs=56.9
Q ss_pred CCCceEEeeccCccccccCCC-CccceEEcccccccccCCCccccCCCCccccCCCceeecCCCcHHHHHHHHHHHHHHH
Q 042009 12 GFGRCYISGVAGSFYDRLFPD-KSLHFVHSSSSLHWLSQVPPALESNATPAALNKGKIYISKSSPQCVLDAYSLQFQNNF 90 (262)
Q Consensus 12 ~~~~~f~~~vpgSFY~rlfP~-~Svh~~~Ss~alHWLS~~P~~~~~~~~s~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~ 90 (262)
..+++|.+|.- ..-|. +..|++|.=|++-.|+ ..||
T Consensus 104 ~v~~~~~~gLQ-----~f~P~~~~YDlIW~QW~lghLT--------------------------------------D~dl 140 (218)
T PF05891_consen 104 RVGEFYCVGLQ-----DFTPEEGKYDLIWIQWCLGHLT--------------------------------------DEDL 140 (218)
T ss_dssp CEEEEEES-GG-----G----TT-EEEEEEES-GGGS---------------------------------------HHHH
T ss_pred CcceEEecCHh-----hccCCCCcEeEEEehHhhccCC--------------------------------------HHHH
Confidence 45578888764 33464 7899999877665532 2588
Q ss_pred HHHHHHHHHhhccCceEEEE-ecccCCCCCCCchhhHHHHHHHHHHHHHHHhccCChhhhcccccCcccCCHHHHHHHHh
Q 042009 91 LIFLKSRAAEMVAGGRMVLS-LMGRRSIDPTTEESCYQWELLAQALMSLVTERLIEEEKLDSFNAPYYAPCPEELKMAIQ 169 (262)
Q Consensus 91 ~~FL~~Ra~EL~~GG~mvl~-~~g~~~~~~~~~~~~~~~~~l~~al~dmv~eGli~~e~~dsfn~P~y~ps~~Ev~~~ie 169 (262)
..||+-=.+-|+|||.+|+= ....... -.++++ | -...||.+.++.+++
T Consensus 141 v~fL~RCk~~L~~~G~IvvKEN~~~~~~------------------------~~~D~~--D----sSvTRs~~~~~~lF~ 190 (218)
T PF05891_consen 141 VAFLKRCKQALKPNGVIVVKENVSSSGF------------------------DEFDEE--D----SSVTRSDEHFRELFK 190 (218)
T ss_dssp HHHHHHHHHHEEEEEEEEEEEEEESSSE------------------------EEEETT--T----TEEEEEHHHHHHHHH
T ss_pred HHHHHHHHHhCcCCcEEEEEecCCCCCC------------------------cccCCc--c----CeeecCHHHHHHHHH
Confidence 99999888999999988874 1221110 011111 1 234678888889999
Q ss_pred cCCceEEEEEEe
Q 042009 170 KEGSFIIDRLGH 181 (262)
Q Consensus 170 ~~gsF~I~~le~ 181 (262)
+.| ++|.+-+.
T Consensus 191 ~AG-l~~v~~~~ 201 (218)
T PF05891_consen 191 QAG-LRLVKEEK 201 (218)
T ss_dssp HCT--EEEEEEE
T ss_pred HcC-CEEEEecc
Confidence 888 66655553
No 58
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=62.98 E-value=42 Score=29.51 Aligned_cols=59 Identities=20% Similarity=0.104 Sum_probs=38.0
Q ss_pred HHHHhhccCceEEEEecccCCCCCCCchhhHHHHHHHHHHHHHHHhccCChhhhcccccCcccCCHHHHHHHHhcCC
Q 042009 96 SRAAEMVAGGRMVLSLMGRRSIDPTTEESCYQWELLAQALMSLVTERLIEEEKLDSFNAPYYAPCPEELKMAIQKEG 172 (262)
Q Consensus 96 ~Ra~EL~~GG~mvl~~~g~~~~~~~~~~~~~~~~~l~~al~dmv~eGli~~e~~dsfn~P~y~ps~~Ev~~~ie~~g 172 (262)
.=++-|++||.|++.-+=..++..++. ++. .+...|++ -|--+=.|..++|.+.-++.|
T Consensus 126 ~a~~~L~~gG~L~~YGPF~~~G~~ts~-SN~---~FD~sLr~--------------rdp~~GiRD~e~v~~lA~~~G 184 (204)
T PF06080_consen 126 GAARLLKPGGLLFLYGPFNRDGKFTSE-SNA---AFDASLRS--------------RDPEWGIRDIEDVEALAAAHG 184 (204)
T ss_pred HHHHhCCCCCEEEEeCCcccCCEeCCc-HHH---HHHHHHhc--------------CCCCcCccCHHHHHHHHHHCC
Confidence 337889999999998776555444333 332 23344444 232345678888888888887
No 59
>PF02268 TFIIA_gamma_N: Transcription initiation factor IIA, gamma subunit, helical domain; InterPro: IPR015872 Transcription factor IIA (TFIIA) is one of several factors that form part of a transcription pre-initiation complex along with RNA polymerase II, the TATA-box-binding protein (TBP) and TBP-associated factors, on the TATA-box sequence upstream of the initiation start site. After initiation, some components of the pre-initiation complex (including TFIIA) remain attached and re-initiate a subsequent round of transcription. TFIIA binds to TBP to stabilise TBP binding to the TATA element. TFIIA also inhibits the cytokine HMGB1 (high mobility group 1 protein) binding to TBP [], and can dissociate HMGB1 already bound to TBP/TATA-box. Human and Drosophila TFIIA have three subunits: two large subunits, LN/alpha and LC/beta, derived from the same gene, and a small subunit, S/gamma. Yeast TFIIA has two subunits: a large TOA1 subunit that shows sequence similarity to the N-terminal of LN/alpha and the C-terminal of LC/beta, and a small subunit, TOA2 that is highly homologous with S/gamma. The conserved regions of the large and small subunits of TFIIA combine to form two domains: a four-helix bundle (helical domain) composed of two helices from each of the N-terminal regions of TOA1 and TOA2 in yeast; and a beta-barrel (beta-barrel domain) composed of beta-sheets from the C-terminal regions of TOA1 and TOA2 []. This entry represents the alpha-helical domain found at the N-terminal of the gamma subunit of transcription factor TFIIA.; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005672 transcription factor TFIIA complex; PDB: 1NVP_D 1RM1_B 1YTF_D 1NH2_D.
Probab=62.06 E-value=7.4 Score=26.47 Aligned_cols=22 Identities=23% Similarity=0.129 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHhccCChhh
Q 042009 127 QWELLAQALMSLVTERLIEEEK 148 (262)
Q Consensus 127 ~~~~l~~al~dmv~eGli~~e~ 148 (262)
+=..|.++|++|+.+|.|+++-
T Consensus 11 lG~aL~dtLDeli~~~~I~p~L 32 (49)
T PF02268_consen 11 LGIALTDTLDELIQEGKITPQL 32 (49)
T ss_dssp HHHHHHHHHHHHHHTTSS-HHH
T ss_pred HHHHHHHHHHHHHHcCCCCHHH
Confidence 4467999999999999999874
No 60
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=60.95 E-value=41 Score=28.70 Aligned_cols=30 Identities=17% Similarity=0.320 Sum_probs=23.9
Q ss_pred ccCcccCCHHHHHHHHhcCCceEEEEEEeEe
Q 042009 153 NAPYYAPCPEELKMAIQKEGSFIIDRLGHFE 183 (262)
Q Consensus 153 n~P~y~ps~~Ev~~~ie~~gsF~I~~le~~~ 183 (262)
..+.+..+.+|+...++..| |++...+.+.
T Consensus 187 ~~~~~~~~~~~~~~~l~~~G-f~~~~~~~~~ 216 (230)
T PRK07580 187 TTRIYPHREKGIRRALAAAG-FKVVRTERIS 216 (230)
T ss_pred CCCccccCHHHHHHHHHHCC-CceEeeeecc
Confidence 34567789999999999988 8887776653
No 61
>PF02167 Cytochrom_C1: Cytochrome C1 family; InterPro: IPR002326 Cytochrome bc1 complex (ubiquinol:ferricytochrome c oxidoreductase) is found in mitochondria, photosynthetic bacteria and other prokaryotes. It is minimally composed of three subunits: cytochrome b, carrying a low- and a high-potential haem group; cytochrome c1 (cyt c1); and a high-potential Rieske iron-sulphur protein. The general function of the complex is electron transfer between two mobile redox carriers, ubiquinol and cytochrome c; the electron transfer is coupled with proton translocation across the membrane, thus generating proton-motive force in the form of an electrochemical potential that can drive ATP synthesis. In its structure and functions, the cytochrome bc1 complex bears extensive analogy to the cytochrome b6f complex of chloroplasts and cyanobacteria; cyt c1 plays an analogous role to cytochrome f, in spite of their different structures [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding; PDB: 1P84_D 2IBZ_D 1EZV_D 3CX5_O 3CXH_O 1KB9_D 1KYO_D 1ZRT_Q 2CA4_B 2C9X_B ....
Probab=59.79 E-value=11 Score=33.48 Aligned_cols=49 Identities=22% Similarity=0.543 Sum_probs=30.0
Q ss_pred ccCccccccCCCCccceEEcccccccccCCCccccCCCCccccCCCceeecCCCcHHHHHHHHHHHHHHHHHHHHH
Q 042009 21 VAGSFYDRLFPDKSLHFVHSSSSLHWLSQVPPALESNATPAALNKGKIYISKSSPQCVLDAYSLQFQNNFLIFLKS 96 (262)
Q Consensus 21 vpgSFY~rlfP~~Svh~~~Ss~alHWLS~~P~~~~~~~~s~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~ 96 (262)
-||-+|+.+||.+- ++ +|..|.+. .|-+...++++ .+|..+|..+||.-
T Consensus 133 ~~~~~~N~~fpg~~------------ia-MP~~L~~~---------~v~y~dGt~at-----~~q~a~DVv~FL~w 181 (219)
T PF02167_consen 133 RPGGYYNPYFPGGA------------IA-MPPPLSDG---------QVEYDDGTPAT-----VDQMAKDVVNFLAW 181 (219)
T ss_dssp STTSEEETTSTTSE------------ES-S--TSSTT---------SS-BTTTB--------HHHHHHHHHHHHHH
T ss_pred CCCCccccccCCCc------------cc-chhhhhhh---------cccccCCCcch-----HHHHHHHHHHHHHH
Confidence 58889999998743 33 37777652 33333333443 57899999999984
No 62
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=59.28 E-value=75 Score=26.89 Aligned_cols=21 Identities=38% Similarity=0.585 Sum_probs=17.5
Q ss_pred cccCCCCccceEEcccccccc
Q 042009 27 DRLFPDKSLHFVHSSSSLHWL 47 (262)
Q Consensus 27 ~rlfP~~Svh~~~Ss~alHWL 47 (262)
..++|++++|.++..+..+|.
T Consensus 80 ~~~~~~~~~d~v~~~~pdpw~ 100 (194)
T TIGR00091 80 DKFFPDGSLSKVFLNFPDPWP 100 (194)
T ss_pred HhhCCCCceeEEEEECCCcCC
Confidence 345788899999999998884
No 63
>PRK10079 phosphonate metabolism transcriptional regulator PhnF; Provisional
Probab=57.74 E-value=12 Score=32.90 Aligned_cols=54 Identities=13% Similarity=0.214 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHhhccCceEEEEecccCCCCCCCchhhHHH----HHHHHHHHHHHHhccCChhhhcc
Q 042009 84 LQFQNNFLIFLKSRAAEMVAGGRMVLSLMGRRSIDPTTEESCYQW----ELLAQALMSLVTERLIEEEKLDS 151 (262)
Q Consensus 84 ~Q~~~D~~~FL~~Ra~EL~~GG~mvl~~~g~~~~~~~~~~~~~~~----~~l~~al~dmv~eGli~~e~~ds 151 (262)
.|.+.++..-+. . ++.||.+| |+..+.+..| ..+.+||.+|++||+|....--.
T Consensus 15 ~qi~~~L~~~I~--~-~~~~G~~L-----------PsE~eLa~~~~VSR~TVR~Al~~L~~eGli~r~~G~G 72 (241)
T PRK10079 15 QEIAAKLEQELR--Q-HYRCGDYL-----------PAEQQLAARYEVNRHTLRRAIDQLVEKGWVQRRQGVG 72 (241)
T ss_pred HHHHHHHHHHHh--c-ccCCCCcC-----------CCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCCE
Confidence 566777777764 4 89999987 3233322222 47899999999999998766433
No 64
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=56.24 E-value=31 Score=32.34 Aligned_cols=56 Identities=20% Similarity=0.394 Sum_probs=44.5
Q ss_pred HHhhccCceEEEEecccCCCCCCCchhhHHHHHHHHHHHHHHHhccCChhhhcccccCcccCCHHHHHHHHhcCCceE
Q 042009 98 AAEMVAGGRMVLSLMGRRSIDPTTEESCYQWELLAQALMSLVTERLIEEEKLDSFNAPYYAPCPEELKMAIQKEGSFI 175 (262)
Q Consensus 98 a~EL~~GG~mvl~~~g~~~~~~~~~~~~~~~~~l~~al~dmv~eGli~~e~~dsfn~P~y~ps~~Ev~~~ie~~gsF~ 175 (262)
..-|+|||.|||..+..+.+.. .-++.++.+..|+-=++.||..-++..+++.| |+
T Consensus 206 k~~L~~gGeLvLETlvi~g~~~---------------------~~L~P~~rYa~m~nv~FiPs~~~L~~wl~r~g-F~ 261 (315)
T PF08003_consen 206 KDSLRPGGELVLETLVIDGDEN---------------------TVLVPEDRYAKMRNVWFIPSVAALKNWLERAG-FK 261 (315)
T ss_pred HHhhCCCCEEEEEEeeecCCCc---------------------eEEccCCcccCCCceEEeCCHHHHHHHHHHcC-Cc
Confidence 4569999999999887654321 23567778888888889999999999999999 54
No 65
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=55.71 E-value=7.4 Score=33.65 Aligned_cols=35 Identities=29% Similarity=0.286 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHhccCChhhhcccccCcccCCHH
Q 042009 128 WELLAQALMSLVTERLIEEEKLDSFNAPYYAPCPE 162 (262)
Q Consensus 128 ~~~l~~al~dmv~eGli~~e~~dsfn~P~y~ps~~ 162 (262)
--.+.++++.||.+|+|..|++-+-|+=|-+||.+
T Consensus 29 ~~~VKdvlq~LvDDglV~~EKiGssn~YWsFps~~ 63 (188)
T PF03962_consen 29 SMSVKDVLQSLVDDGLVHVEKIGSSNYYWSFPSQA 63 (188)
T ss_pred hhhHHHHHHHHhccccchhhhccCeeEEEecChHH
Confidence 35789999999999999999999999999999754
No 66
>COG5124 Protein predicted to be involved in meiotic recombination [Cell division and chromosome partitioning / General function prediction only]
Probab=55.69 E-value=7 Score=33.75 Aligned_cols=36 Identities=17% Similarity=0.128 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHhccCChhhhcccccCcccCCH
Q 042009 126 YQWELLAQALMSLVTERLIEEEKLDSFNAPYYAPCP 161 (262)
Q Consensus 126 ~~~~~l~~al~dmv~eGli~~e~~dsfn~P~y~ps~ 161 (262)
.....+.+.|++||.+|+|+.|+.-+-|+=|-+||.
T Consensus 40 IVl~tVKd~lQqlVDDgvV~~EK~GtsN~YWsF~s~ 75 (209)
T COG5124 40 IVLMTVKDLLQQLVDDGVVSVEKCGTSNIYWSFKSQ 75 (209)
T ss_pred cHHHHHHHHHHHHhhcCceeeeeeccceeEEecchH
Confidence 346788999999999999999999999999999864
No 67
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=55.59 E-value=9.2 Score=23.21 Aligned_cols=19 Identities=26% Similarity=0.351 Sum_probs=15.5
Q ss_pred HHHHHHHHhccCChhhhcc
Q 042009 133 QALMSLVTERLIEEEKLDS 151 (262)
Q Consensus 133 ~al~dmv~eGli~~e~~ds 151 (262)
..|.+|-+.|+|+++++..
T Consensus 6 ~~L~~l~~~G~IseeEy~~ 24 (31)
T PF09851_consen 6 EKLKELYDKGEISEEEYEQ 24 (31)
T ss_pred HHHHHHHHcCCCCHHHHHH
Confidence 4578889999999998653
No 68
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=55.55 E-value=44 Score=29.05 Aligned_cols=48 Identities=29% Similarity=0.349 Sum_probs=33.6
Q ss_pred ceeecCCC-cHHHHHHHHHHHHHHHHHHHHHHHHhhccCceEEEEecccCCCCCCCchhhHHHHHHHHHHHHHHHhcc
Q 042009 67 KIYISKSS-PQCVLDAYSLQFQNNFLIFLKSRAAEMVAGGRMVLSLMGRRSIDPTTEESCYQWELLAQALMSLVTERL 143 (262)
Q Consensus 67 ~i~~~~~s-~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl~~~g~~~~~~~~~~~~~~~~~l~~al~dmv~eGl 143 (262)
.|+|.++. -+++.+++ .+-|+|||++|++..- .+.+..++..|.+.|.
T Consensus 105 aiFIGGg~~i~~ile~~---------------~~~l~~ggrlV~nait--------------lE~~~~a~~~~~~~g~ 153 (187)
T COG2242 105 AIFIGGGGNIEEILEAA---------------WERLKPGGRLVANAIT--------------LETLAKALEALEQLGG 153 (187)
T ss_pred EEEECCCCCHHHHHHHH---------------HHHcCcCCeEEEEeec--------------HHHHHHHHHHHHHcCC
Confidence 78888764 33455554 7779999999998653 3566777777766664
No 69
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=55.35 E-value=11 Score=28.16 Aligned_cols=23 Identities=22% Similarity=0.287 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHhhccCceEEEEe
Q 042009 89 NFLIFLKSRAAEMVAGGRMVLSL 111 (262)
Q Consensus 89 D~~~FL~~Ra~EL~~GG~mvl~~ 111 (262)
+...+|+.=.+-|+|||+|++.-
T Consensus 89 ~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 89 ERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHHHHHHHhcCCCcEEEEEE
Confidence 34455666688999999999863
No 70
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=54.49 E-value=26 Score=31.89 Aligned_cols=54 Identities=19% Similarity=0.282 Sum_probs=36.2
Q ss_pred HHHhhccCceEEEEecccCCCCCCCchhhHHHHHHHHHHHHHHHhccCChhhhcccccCcccCCHHHHHHHHhcCCceEE
Q 042009 97 RAAEMVAGGRMVLSLMGRRSIDPTTEESCYQWELLAQALMSLVTERLIEEEKLDSFNAPYYAPCPEELKMAIQKEGSFII 176 (262)
Q Consensus 97 Ra~EL~~GG~mvl~~~g~~~~~~~~~~~~~~~~~l~~al~dmv~eGli~~e~~dsfn~P~y~ps~~Ev~~~ie~~gsF~I 176 (262)
=+.=|+|||.||+...-..+. + .+..-.+|.+.-+.+.|+++|++.| |.|
T Consensus 185 i~~lLkpGG~Lil~~~l~~t~--Y---------------------------~vG~~~F~~l~l~ee~v~~al~~aG-~~i 234 (256)
T PF01234_consen 185 ISSLLKPGGHLILAGVLGSTY--Y---------------------------MVGGHKFPCLPLNEEFVREALEEAG-FDI 234 (256)
T ss_dssp HHTTEEEEEEEEEEEESS-SE--E---------------------------EETTEEEE---B-HHHHHHHHHHTT-EEE
T ss_pred HHHHcCCCcEEEEEEEcCcee--E---------------------------EECCEecccccCCHHHHHHHHHHcC-CEE
Confidence 367799999999987643221 0 0111236888889999999999998 899
Q ss_pred EEEE
Q 042009 177 DRLG 180 (262)
Q Consensus 177 ~~le 180 (262)
...+
T Consensus 235 ~~~~ 238 (256)
T PF01234_consen 235 EDLE 238 (256)
T ss_dssp EEEE
T ss_pred Eecc
Confidence 9888
No 71
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=52.95 E-value=20 Score=31.45 Aligned_cols=54 Identities=19% Similarity=0.368 Sum_probs=34.1
Q ss_pred EEeeccCccccccCCCCccceEEcccccccccCCCccccCCCCccccCCCceeecCCCcHHHHHHHHHHHHHHHHHHHHH
Q 042009 17 YISGVAGSFYDRLFPDKSLHFVHSSSSLHWLSQVPPALESNATPAALNKGKIYISKSSPQCVLDAYSLQFQNNFLIFLKS 96 (262)
Q Consensus 17 f~~~vpgSFY~rlfP~~Svh~~~Ss~alHWLS~~P~~~~~~~~s~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~ 96 (262)
-...||. ..|..+.|+++-|-.+++|+. ..|+..++..
T Consensus 94 ~~~dvp~-----~~P~~~FDLIV~SEVlYYL~~-------------------------------------~~~L~~~l~~ 131 (201)
T PF05401_consen 94 IQADVPE-----FWPEGRFDLIVLSEVLYYLDD-------------------------------------AEDLRAALDR 131 (201)
T ss_dssp EES-TTT--------SS-EEEEEEES-GGGSSS-------------------------------------HHHHHHHHHH
T ss_pred EECcCCC-----CCCCCCeeEEEEehHhHcCCC-------------------------------------HHHHHHHHHH
Confidence 4444665 359999999999999999865 1233344444
Q ss_pred HHHhhccCceEEEEec
Q 042009 97 RAAEMVAGGRMVLSLM 112 (262)
Q Consensus 97 Ra~EL~~GG~mvl~~~ 112 (262)
=.+-|.|||.||+.-.
T Consensus 132 l~~~L~pgG~LV~g~~ 147 (201)
T PF05401_consen 132 LVAALAPGGHLVFGHA 147 (201)
T ss_dssp HHHTEEEEEEEEEEEE
T ss_pred HHHHhCCCCEEEEEEe
Confidence 4678999999998643
No 72
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=52.20 E-value=37 Score=29.61 Aligned_cols=57 Identities=26% Similarity=0.422 Sum_probs=39.5
Q ss_pred eeccCccccccCCCCccceEEcccccc-cccCCCccccCCCCccccCCCceeecCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 042009 19 SGVAGSFYDRLFPDKSLHFVHSSSSLH-WLSQVPPALESNATPAALNKGKIYISKSSPQCVLDAYSLQFQNNFLIFLKSR 97 (262)
Q Consensus 19 ~~vpgSFY~rlfP~~Svh~~~Ss~alH-WLS~~P~~~~~~~~s~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~R 97 (262)
.-+||.|+ .=+|. -|+++-++.|| | + + +|-..+|+.=
T Consensus 146 ~~~~gd~f-~~~P~--~D~~~l~~vLh~~-~---d-----------------------------------~~~~~iL~~~ 183 (241)
T PF00891_consen 146 EFVPGDFF-DPLPV--ADVYLLRHVLHDW-S---D-----------------------------------EDCVKILRNA 183 (241)
T ss_dssp EEEES-TT-TCCSS--ESEEEEESSGGGS-----H-----------------------------------HHHHHHHHHH
T ss_pred ccccccHH-hhhcc--ccceeeehhhhhc-c---h-----------------------------------HHHHHHHHHH
Confidence 44889999 77888 89888888887 4 2 1 1223445555
Q ss_pred HHhhccC--ceEEEEecccCCC
Q 042009 98 AAEMVAG--GRMVLSLMGRRSI 117 (262)
Q Consensus 98 a~EL~~G--G~mvl~~~g~~~~ 117 (262)
++-|.|| |++++.=.-.++.
T Consensus 184 ~~al~pg~~g~llI~e~~~~~~ 205 (241)
T PF00891_consen 184 AAALKPGKDGRLLIIEMVLPDD 205 (241)
T ss_dssp HHHSEECTTEEEEEEEEEECSS
T ss_pred HHHhCCCCCCeEEEEeeccCCC
Confidence 7889999 9999886655544
No 73
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=51.05 E-value=19 Score=27.16 Aligned_cols=23 Identities=26% Similarity=0.434 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhhccCceEEEEec
Q 042009 90 FLIFLKSRAAEMVAGGRMVLSLM 112 (262)
Q Consensus 90 ~~~FL~~Ra~EL~~GG~mvl~~~ 112 (262)
+..+++.=.+-|+|||++++++.
T Consensus 101 ~~~~l~~~~~~Lk~gG~li~~~~ 123 (124)
T TIGR02469 101 LQEILEAIWRRLRPGGRIVLNAI 123 (124)
T ss_pred HHHHHHHHHHHcCCCCEEEEEec
Confidence 45778888999999999999864
No 74
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=49.63 E-value=16 Score=32.72 Aligned_cols=16 Identities=19% Similarity=0.270 Sum_probs=12.9
Q ss_pred HhhccCceEEEEeccc
Q 042009 99 AEMVAGGRMVLSLMGR 114 (262)
Q Consensus 99 ~EL~~GG~mvl~~~g~ 114 (262)
+-|+|||++++..+|.
T Consensus 169 rvLkpgG~li~~~p~~ 184 (272)
T PRK11088 169 RVVKPGGIVITVTPGP 184 (272)
T ss_pred hhccCCCEEEEEeCCC
Confidence 4699999999987653
No 75
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=48.66 E-value=28 Score=29.74 Aligned_cols=42 Identities=24% Similarity=0.256 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHhccCChhhhcccccCcccCCHHHHHHHHhc
Q 042009 126 YQWELLAQALMSLVTERLIEEEKLDSFNAPYYAPCPEELKMAIQK 170 (262)
Q Consensus 126 ~~~~~l~~al~dmv~eGli~~e~~dsfn~P~y~ps~~Ev~~~ie~ 170 (262)
.+|+-|-+-++.|+++|.|+++.++ +.....+++|+-+.|++
T Consensus 136 g~~~~l~~~l~~~~~~gfi~~~~~~---~~~~~d~~~e~~~~i~~ 177 (178)
T TIGR00730 136 GHFDGLVEWLKYSIQEGFISESHLK---LIHVVSRPDELIEQVQN 177 (178)
T ss_pred chHHHHHHHHHHHHHCCCCCHHHcC---cEEEcCCHHHHHHHHHh
Confidence 4789999999999999999999765 55668999999888763
No 76
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=47.10 E-value=21 Score=31.55 Aligned_cols=49 Identities=24% Similarity=0.422 Sum_probs=34.5
Q ss_pred cceEEcccccccccCCCccccCCCCccccCCCceeecCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhccCceEEEEec
Q 042009 35 LHFVHSSSSLHWLSQVPPALESNATPAALNKGKIYISKSSPQCVLDAYSLQFQNNFLIFLKSRAAEMVAGGRMVLSLM 112 (262)
Q Consensus 35 vh~~~Ss~alHWLS~~P~~~~~~~~s~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl~~~ 112 (262)
|++.+-=-+..|=+..|=. .|+++.+ .+++-+++.+| |++||+||+-..
T Consensus 122 V~v~~gDG~~G~~~~aPyD-------------~I~Vtaa-a~~vP~~Ll~Q---------------L~~gGrlv~PvG 170 (209)
T COG2518 122 VTVRHGDGSKGWPEEAPYD-------------RIIVTAA-APEVPEALLDQ---------------LKPGGRLVIPVG 170 (209)
T ss_pred eEEEECCcccCCCCCCCcC-------------EEEEeec-cCCCCHHHHHh---------------cccCCEEEEEEc
Confidence 7777777778885554432 5777655 34456677666 999999999877
No 77
>TIGR02404 trehalos_R_Bsub trehalose operon repressor, B. subtilis-type. This family consists of repressors of the GntR family typically associated with trehalose utilization operons. Trehalose is imported as trehalose-6-phosphate and then hydrolyzed by alpha,alpha-phosphotrehalase to glucose and glucose-6-P. This family includes repressors mostly from Gram-positive lineages and does not include the TreR from E. coli.
Probab=46.11 E-value=22 Score=30.93 Aligned_cols=54 Identities=19% Similarity=0.219 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHhhccCceEEEEecccCCCCCCCchhhHHH----HHHHHHHHHHHHhccCChhhhcc
Q 042009 85 QFQNNFLIFLKSRAAEMVAGGRMVLSLMGRRSIDPTTEESCYQW----ELLAQALMSLVTERLIEEEKLDS 151 (262)
Q Consensus 85 Q~~~D~~~FL~~Ra~EL~~GG~mvl~~~g~~~~~~~~~~~~~~~----~~l~~al~dmv~eGli~~e~~ds 151 (262)
|.+.++..-+. +.++.||.+| |+..+.+..| ..+.+||++|++||+|....--.
T Consensus 4 qi~~~l~~~I~--~g~~~~G~~L-----------PsE~eLa~~~gVSR~TVR~Al~~L~~eGli~r~~G~G 61 (233)
T TIGR02404 4 QIYQDLEQKIT--HGQYKEGDYL-----------PSEHELMDQYGASRETVRKALNLLTEAGYIQKIQGKG 61 (233)
T ss_pred HHHHHHHHHHH--hCCCCCCCCC-----------cCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEeCCce
Confidence 34444444333 5688888776 3333323222 37899999999999999877433
No 78
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=45.90 E-value=75 Score=27.89 Aligned_cols=63 Identities=22% Similarity=0.355 Sum_probs=39.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhhccCceEEEEecccCCCCCCCchhhHHHHHHHHHHHHHHHhccCChhhhccccc
Q 042009 75 PQCVLDAYSLQFQNNFLIFLKSRAAEMVAGGRMVLSLMGRRSIDPTTEESCYQWELLAQALMSLVTERLIEEEKLDSFNA 154 (262)
Q Consensus 75 ~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl~~~g~~~~~~~~~~~~~~~~~l~~al~dmv~eGli~~e~~dsfn~ 154 (262)
|++..++|++|. ++=|+|||+++|..+--+... ..=
T Consensus 130 pp~~R~~Ya~~l-----------~~ll~p~g~~lLi~l~~~~~~---------------------------------~~G 165 (218)
T PF05724_consen 130 PPEMRERYAQQL-----------ASLLKPGGRGLLITLEYPQGE---------------------------------MEG 165 (218)
T ss_dssp -GGGHHHHHHHH-----------HHCEEEEEEEEEEEEES-CSC---------------------------------SSS
T ss_pred CHHHHHHHHHHH-----------HHHhCCCCcEEEEEEEcCCcC---------------------------------CCC
Confidence 566677787775 456899999555444221110 112
Q ss_pred CcccCCHHHHHHHHhcCCceEEEEEEeEe
Q 042009 155 PYYAPCPEELKMAIQKEGSFIIDRLGHFE 183 (262)
Q Consensus 155 P~y~ps~~Ev~~~ie~~gsF~I~~le~~~ 183 (262)
|=|.=+.+||++.+. +.|+|+.++..+
T Consensus 166 PPf~v~~~ev~~l~~--~~f~i~~l~~~~ 192 (218)
T PF05724_consen 166 PPFSVTEEEVRELFG--PGFEIEELEEED 192 (218)
T ss_dssp SS----HHHHHHHHT--TTEEEEEEEEEE
T ss_pred cCCCCCHHHHHHHhc--CCcEEEEEeccc
Confidence 666778899999999 459999999854
No 79
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=45.86 E-value=51 Score=22.81 Aligned_cols=19 Identities=32% Similarity=0.522 Sum_probs=12.9
Q ss_pred HHHHHHHHhhccCceEEEE
Q 042009 92 IFLKSRAAEMVAGGRMVLS 110 (262)
Q Consensus 92 ~FL~~Ra~EL~~GG~mvl~ 110 (262)
.+|+.-..=++|||.++++
T Consensus 85 ~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 85 RFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred HHHHHHHHHcCCCCEEEEE
Confidence 3344445557899999886
No 80
>TIGR02018 his_ut_repres histidine utilization repressor, proteobacterial. This model represents a proteobacterial histidine utilization repressor. It is usually found clustered with the enzymes HutUHIG so that it can regulate its own expression as well. A number of species have several paralogs and may fine-tune the regulation according to levels of degradation intermediates such as urocanate. This family belongs to the larger GntR family of transcriptional regulators.
Probab=45.60 E-value=25 Score=30.57 Aligned_cols=54 Identities=22% Similarity=0.309 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHhhccCceEEEEecccCCCCCCCchhhHH----HHHHHHHHHHHHHhccCChhhhcc
Q 042009 85 QFQNNFLIFLKSRAAEMVAGGRMVLSLMGRRSIDPTTEESCYQ----WELLAQALMSLVTERLIEEEKLDS 151 (262)
Q Consensus 85 Q~~~D~~~FL~~Ra~EL~~GG~mvl~~~g~~~~~~~~~~~~~~----~~~l~~al~dmv~eGli~~e~~ds 151 (262)
|.+.++..-+. +.|+.||.+| |+..+.+.. -..+.+||..|++||+|....--.
T Consensus 5 qi~~~l~~~I~--~g~~~~g~~L-----------PsE~eLa~~~~VSR~TVR~Al~~L~~eGli~r~~G~G 62 (230)
T TIGR02018 5 RIKQDILERIR--SGEWPPGHRI-----------PSEHELVAQYGCSRMTVNRALRELTDAGLLERRQGVG 62 (230)
T ss_pred HHHHHHHHHHH--hCCCCCCCcC-----------cCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCCE
Confidence 44455444333 5788888876 322222222 236899999999999998776433
No 81
>PRK05785 hypothetical protein; Provisional
Probab=45.36 E-value=7.5 Score=34.18 Aligned_cols=27 Identities=44% Similarity=0.461 Sum_probs=21.8
Q ss_pred CccccccCCCCccceEEcccccccccC
Q 042009 23 GSFYDRLFPDKSLHFVHSSSSLHWLSQ 49 (262)
Q Consensus 23 gSFY~rlfP~~Svh~~~Ss~alHWLS~ 49 (262)
|++-.--||++|.|.++|+++|||+..
T Consensus 99 ~d~~~lp~~d~sfD~v~~~~~l~~~~d 125 (226)
T PRK05785 99 GSFEALPFRDKSFDVVMSSFALHASDN 125 (226)
T ss_pred echhhCCCCCCCEEEEEecChhhccCC
Confidence 455555588999999999999999654
No 82
>PF14904 FAM86: Family of unknown function
Probab=42.42 E-value=23 Score=27.71 Aligned_cols=31 Identities=23% Similarity=0.293 Sum_probs=26.7
Q ss_pred HhhhhhhhhhHHHHHh--hHHHHHHHHHHHHHH
Q 042009 208 AKTVRAVVESMFELHF--GKAMMDLLFARYAEM 238 (262)
Q Consensus 208 a~~~RA~~ep~l~~hf--ge~I~delF~r~~~~ 238 (262)
.+|.|++...+|..|- +.++.|+||+.|+..
T Consensus 67 ~kY~~~FLk~lI~k~Ea~~~EplDeLYealae~ 99 (100)
T PF14904_consen 67 VKYRRCFLKELIKKHEAVHCEPLDELYEALAEV 99 (100)
T ss_pred hhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhh
Confidence 5788999999999887 588999999999864
No 83
>PF02375 JmjN: jmjN domain; InterPro: IPR003349 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with JmjC (see IPR003347 from INTERPRO).; PDB: 2XML_A 2W2I_C 3DXT_A 3DXU_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=41.67 E-value=9.3 Score=23.93 Aligned_cols=15 Identities=40% Similarity=0.651 Sum_probs=8.8
Q ss_pred CcccCCHHHHHHHHh
Q 042009 155 PYYAPCPEELKMAIQ 169 (262)
Q Consensus 155 P~y~ps~~Ev~~~ie 169 (262)
|.+.||.+|++..+.
T Consensus 1 Pvf~Pt~eEF~dp~~ 15 (34)
T PF02375_consen 1 PVFYPTMEEFKDPIK 15 (34)
T ss_dssp EEE---HHHHS-HHH
T ss_pred CcccCCHHHHhCHHH
Confidence 788999999887765
No 84
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=41.48 E-value=1.1e+02 Score=25.29 Aligned_cols=73 Identities=11% Similarity=0.040 Sum_probs=38.9
Q ss_pred ccCccccccCCCCccceEEcccccccccCCCccccCCCCccccCCCceeecCCCcHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042009 21 VAGSFYDRLFPDKSLHFVHSSSSLHWLSQVPPALESNATPAALNKGKIYISKSSPQCVLDAYSLQFQNNFLIFLKSRAAE 100 (262)
Q Consensus 21 vpgSFY~rlfP~~Svh~~~Ss~alHWLS~~P~~~~~~~~s~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~E 100 (262)
+-+..+..+ .++.|+++|+..+|.....+.. + .|.+- .+...... ...+..||+.=.+-
T Consensus 71 ~~~d~~~~~--~~~fD~Vi~n~p~~~~~~~~~~--~-----~~~~~-~~~~~~~~-----------~~~~~~~l~~~~~~ 129 (179)
T TIGR00537 71 VMTDLFKGV--RGKFDVILFNPPYLPLEDDLRR--G-----DWLDV-AIDGGKDG-----------RKVIDRFLDELPEI 129 (179)
T ss_pred EEccccccc--CCcccEEEECCCCCCCcchhcc--c-----chhhh-hhhcCCch-----------HHHHHHHHHhHHHh
Confidence 445666533 4589999999888765442211 0 00000 00000001 11234556655667
Q ss_pred hccCceEEEEeccc
Q 042009 101 MVAGGRMVLSLMGR 114 (262)
Q Consensus 101 L~~GG~mvl~~~g~ 114 (262)
|+|||++++...+.
T Consensus 130 Lk~gG~~~~~~~~~ 143 (179)
T TIGR00537 130 LKEGGRVQLIQSSL 143 (179)
T ss_pred hCCCCEEEEEEecc
Confidence 99999999886543
No 85
>TIGR02325 C_P_lyase_phnF phosphonates metabolism transcriptional regulator PhnF. All members of the seed alignment for this family are predicted helix-turn-helix transcriptional regulatory proteins of the broader gntR and are found associated with genes for the import and degradation of phosphonates and/or related compounds (e.g. phosphonites) with a direct C-P bond.
Probab=41.02 E-value=31 Score=29.96 Aligned_cols=53 Identities=19% Similarity=0.278 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHhhccCceEEEEecccCCCCCCCchhhHHH----HHHHHHHHHHHHhccCChhhh
Q 042009 84 LQFQNNFLIFLKSRAAEMVAGGRMVLSLMGRRSIDPTTEESCYQW----ELLAQALMSLVTERLIEEEKL 149 (262)
Q Consensus 84 ~Q~~~D~~~FL~~Ra~EL~~GG~mvl~~~g~~~~~~~~~~~~~~~----~~l~~al~dmv~eGli~~e~~ 149 (262)
.|.+.++..-+. +.|+.||-+| |+..+.+..| ..+.+||..|++||+|....-
T Consensus 11 ~~i~~~l~~~I~--~g~~~~G~~L-----------PsE~eLa~~~~VSR~TvR~Al~~L~~eGli~r~~G 67 (238)
T TIGR02325 11 RQIADKIEQEIA--AGHLRAGDYL-----------PAEMQLAERFGVNRHTVRRAIAALVERGLLRAEQG 67 (238)
T ss_pred HHHHHHHHHHHH--cCCCCCCCcC-----------cCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecC
Confidence 445555554443 5788888776 3333333222 378999999999999988653
No 86
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=40.73 E-value=25 Score=31.44 Aligned_cols=30 Identities=17% Similarity=0.301 Sum_probs=22.9
Q ss_pred ceeecCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhccCceEEEEec
Q 042009 67 KIYISKSSPQCVLDAYSLQFQNNFLIFLKSRAAEMVAGGRMVLSLM 112 (262)
Q Consensus 67 ~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl~~~ 112 (262)
.||+. +..+++.++|.+| |+|||+|++-..
T Consensus 165 aIhvG-Aaa~~~pq~l~dq---------------L~~gGrllip~~ 194 (237)
T KOG1661|consen 165 AIHVG-AAASELPQELLDQ---------------LKPGGRLLIPVG 194 (237)
T ss_pred eEEEc-cCccccHHHHHHh---------------hccCCeEEEeec
Confidence 68887 4456678888666 899999988754
No 87
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=40.32 E-value=1.7e+02 Score=25.49 Aligned_cols=59 Identities=15% Similarity=0.212 Sum_probs=38.5
Q ss_pred HHHHHHHHhhccCceEEEEecccCCCCCCCchhhHHHHHHHHHHHHHHHhccCChhhhcccccCcccCCHHHHHHHHhcC
Q 042009 92 IFLKSRAAEMVAGGRMVLSLMGRRSIDPTTEESCYQWELLAQALMSLVTERLIEEEKLDSFNAPYYAPCPEELKMAIQKE 171 (262)
Q Consensus 92 ~FL~~Ra~EL~~GG~mvl~~~g~~~~~~~~~~~~~~~~~l~~al~dmv~eGli~~e~~dsfn~P~y~ps~~Ev~~~ie~~ 171 (262)
.+++.=.+=|+|||++++..+..+.... .| |-|.-+++|+++.+..
T Consensus 133 ~~~~~l~~lLkpgG~~ll~~~~~~~~~~---------------------~g------------pp~~~~~~eL~~~f~~- 178 (213)
T TIGR03840 133 RYAAHLLALLPPGARQLLITLDYDQSEM---------------------AG------------PPFSVSPAEVEALYGG- 178 (213)
T ss_pred HHHHHHHHHcCCCCeEEEEEEEcCCCCC---------------------CC------------cCCCCCHHHHHHHhcC-
Confidence 3445557789999987776654432100 01 5578899999998863
Q ss_pred CceEEEEEEeEeec
Q 042009 172 GSFIIDRLGHFEID 185 (262)
Q Consensus 172 gsF~I~~le~~~~~ 185 (262)
.|+|..++..+++
T Consensus 179 -~~~i~~~~~~~~~ 191 (213)
T TIGR03840 179 -HYEIELLESRDVL 191 (213)
T ss_pred -CceEEEEeecccc
Confidence 4888877765543
No 88
>PRK14999 histidine utilization repressor; Provisional
Probab=38.78 E-value=34 Score=30.01 Aligned_cols=53 Identities=15% Similarity=0.148 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHhhccCceEEEEecccCCCCCCCchhhHHH----HHHHHHHHHHHHhccCChhhh
Q 042009 84 LQFQNNFLIFLKSRAAEMVAGGRMVLSLMGRRSIDPTTEESCYQW----ELLAQALMSLVTERLIEEEKL 149 (262)
Q Consensus 84 ~Q~~~D~~~FL~~Ra~EL~~GG~mvl~~~g~~~~~~~~~~~~~~~----~~l~~al~dmv~eGli~~e~~ 149 (262)
.|.+.++..-+. ..++.||.+| |+..+.+..| ..+.+||..|++||+|....-
T Consensus 15 ~qi~~~i~~~I~--~g~~~~G~~L-----------PsE~eLa~~~gVSR~TVR~Al~~L~~eGli~r~~G 71 (241)
T PRK14999 15 ETVKQDICKKIA--GGVWQPHDRI-----------PSEAELVAQYGFSRMTINRALRELTDEGWLVRLQG 71 (241)
T ss_pred HHHHHHHHHHHH--cCCCCCCCcC-----------CCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecC
Confidence 455566555444 5688888876 3233222222 368999999999999987653
No 89
>PF03641 Lysine_decarbox: Possible lysine decarboxylase; InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway. It is a phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms [, ]. The proteins in this entry belong to the LOG family of proteins.; PDB: 1YDH_B 2Q4D_A 1RCU_C 1WEH_B 3SBX_F 3BQ9_B 2PMB_D 3GH1_D 1WEK_C 3QUA_A ....
Probab=38.67 E-value=36 Score=27.39 Aligned_cols=39 Identities=28% Similarity=0.411 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHhccCChhhhcccccCcccCCHHHHHHHH
Q 042009 127 QWELLAQALMSLVTERLIEEEKLDSFNAPYYAPCPEELKMAI 168 (262)
Q Consensus 127 ~~~~l~~al~dmv~eGli~~e~~dsfn~P~y~ps~~Ev~~~i 168 (262)
+|+-+-+-++.|+++|.|+++..+ +.....+++|+-+.|
T Consensus 95 ~w~~l~~~l~~~~~~g~i~~~~~~---~~~~~d~~~e~~~~i 133 (133)
T PF03641_consen 95 FWDPLLEFLDRMIEEGFISPDDLD---LLHFVDDPEEALEYI 133 (133)
T ss_dssp CCHHHHHHHHHHHHTTSSSHHHHC---CEEEESSHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCCCCHHHCC---eEEEeCCHHHHHhhC
Confidence 577788888999999999999755 778888999887654
No 90
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=37.55 E-value=42 Score=28.66 Aligned_cols=14 Identities=21% Similarity=0.413 Sum_probs=11.9
Q ss_pred HhhccCceEEEEec
Q 042009 99 AEMVAGGRMVLSLM 112 (262)
Q Consensus 99 ~EL~~GG~mvl~~~ 112 (262)
+-|+|||+|++.+.
T Consensus 163 ~~L~~gG~lv~~~~ 176 (212)
T PRK00312 163 EQLKEGGILVAPVG 176 (212)
T ss_pred HhcCCCcEEEEEEc
Confidence 46999999999875
No 91
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=36.99 E-value=60 Score=27.45 Aligned_cols=52 Identities=13% Similarity=0.211 Sum_probs=30.7
Q ss_pred HHHHHHHHHhhccCceEEEEecccCCCCCCCchhhHHHHHHHHHHHHHHHhccCChhhhcccccC
Q 042009 91 LIFLKSRAAEMVAGGRMVLSLMGRRSIDPTTEESCYQWELLAQALMSLVTERLIEEEKLDSFNAP 155 (262)
Q Consensus 91 ~~FL~~Ra~EL~~GG~mvl~~~g~~~~~~~~~~~~~~~~~l~~al~dmv~eGli~~e~~dsfn~P 155 (262)
..+++.=.+=|+|||++++.. |... ..-+..+.+.|..+|+ ..-+.++++.|
T Consensus 122 ~~~~~~~~~~LkpgG~lvi~~-~~~~-----------~~~~~~~~e~~~~~~~-~~~~~~~~~~~ 173 (181)
T TIGR00138 122 NVLLELTLNLLKVGGYFLAYK-GKKY-----------LDEIEEAKRKCQVLGV-EPLEVPPLTGP 173 (181)
T ss_pred HHHHHHHHHhcCCCCEEEEEc-CCCc-----------HHHHHHHHHhhhhcCc-eEeeccccCCC
Confidence 334443345599999999774 2211 1223444466666785 45566888888
No 92
>PF10357 Kin17_mid: Domain of Kin17 curved DNA-binding protein; InterPro: IPR019447 This entry represents the conserved central 169 residue region of the Kin17 DNA/RNA-binding proteins. The N-terminal region of Kin17 contains a zinc-finger domain, while in the human and mouse proteins there is a RecA-like domain found in the C-terminal region. In humans, Kin17 protein forms intra-nuclear foci during cell proliferation and is re-distributed in the nucleoplasm during the cell cycle []. ; PDB: 2V1N_A.
Probab=36.80 E-value=43 Score=27.31 Aligned_cols=25 Identities=36% Similarity=0.713 Sum_probs=20.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH
Q 042009 75 PQCVLDAYSLQFQNNFLIFLKSRAA 99 (262)
Q Consensus 75 ~~~v~~ay~~Q~~~D~~~FL~~Ra~ 99 (262)
|..+...|++||++||...|+-|..
T Consensus 10 ~~k~i~~yS~eFe~~Fl~lLr~~hg 34 (127)
T PF10357_consen 10 PGKFIDEYSEEFEKDFLRLLRRRHG 34 (127)
T ss_dssp GGG-HHHHHHHHHHHHHHHHHHHTS
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhcC
Confidence 5567889999999999999998753
No 93
>PRK04266 fibrillarin; Provisional
Probab=36.67 E-value=96 Score=27.34 Aligned_cols=22 Identities=18% Similarity=0.391 Sum_probs=16.6
Q ss_pred HHHHHHhhccCceEEEEecccC
Q 042009 94 LKSRAAEMVAGGRMVLSLMGRR 115 (262)
Q Consensus 94 L~~Ra~EL~~GG~mvl~~~g~~ 115 (262)
|+.=.+-|+|||++++++..++
T Consensus 159 L~~~~r~LKpGG~lvI~v~~~~ 180 (226)
T PRK04266 159 IDNAEFFLKDGGYLLLAIKARS 180 (226)
T ss_pred HHHHHHhcCCCcEEEEEEeccc
Confidence 4444567999999999987753
No 94
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=35.59 E-value=1.4e+02 Score=26.15 Aligned_cols=96 Identities=18% Similarity=0.287 Sum_probs=64.2
Q ss_pred cCCCCccceEEcccccccccCCCccccCCCCccccCCCceeecCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhccCceEE
Q 042009 29 LFPDKSLHFVHSSSSLHWLSQVPPALESNATPAALNKGKIYISKSSPQCVLDAYSLQFQNNFLIFLKSRAAEMVAGGRMV 108 (262)
Q Consensus 29 lfP~~Svh~~~Ss~alHWLS~~P~~~~~~~~s~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mv 108 (262)
-||++|+|.++-|-+|+=+.+ |..+. .+=|+-|.+.+
T Consensus 70 ~f~d~sFD~VIlsqtLQ~~~~-P~~vL------------------------------------------~EmlRVgr~~I 106 (193)
T PF07021_consen 70 DFPDQSFDYVILSQTLQAVRR-PDEVL------------------------------------------EEMLRVGRRAI 106 (193)
T ss_pred hCCCCCccEEehHhHHHhHhH-HHHHH------------------------------------------HHHHHhcCeEE
Confidence 389999999998888876654 44332 12266788899
Q ss_pred EEecccCCCCCCCchhhHHHHHHHHHHHHHHHhccCChhhhcccccCcc------cCCHHHHHHHHhcCCceEEEEEEeE
Q 042009 109 LSLMGRRSIDPTTEESCYQWELLAQALMSLVTERLIEEEKLDSFNAPYY------APCPEELKMAIQKEGSFIIDRLGHF 182 (262)
Q Consensus 109 l~~~g~~~~~~~~~~~~~~~~~l~~al~dmv~eGli~~e~~dsfn~P~y------~ps~~Ev~~~ie~~gsF~I~~le~~ 182 (262)
++|+. ...|.. -..|.-.|..+..+ .+..+|| .-|..++++..++.| ++|.+-..+
T Consensus 107 VsFPN-----------Fg~W~~----R~~l~~~GrmPvt~--~lPy~WYdTPNih~~Ti~DFe~lc~~~~-i~I~~~~~~ 168 (193)
T PF07021_consen 107 VSFPN-----------FGHWRN----RLQLLLRGRMPVTK--ALPYEWYDTPNIHLCTIKDFEDLCRELG-IRIEERVFL 168 (193)
T ss_pred EEecC-----------hHHHHH----HHHHHhcCCCCCCC--CCCCcccCCCCcccccHHHHHHHHHHCC-CEEEEEEEE
Confidence 88873 122432 23444467777663 3433444 569999999999987 888877776
Q ss_pred eec
Q 042009 183 EID 185 (262)
Q Consensus 183 ~~~ 185 (262)
...
T Consensus 169 ~~~ 171 (193)
T PF07021_consen 169 DGG 171 (193)
T ss_pred cCC
Confidence 543
No 95
>KOG3463 consensus Transcription initiation factor IIA, gamma subunit [Transcription]
Probab=35.20 E-value=33 Score=27.08 Aligned_cols=54 Identities=17% Similarity=0.219 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHhccCChhhhcccccCcccCCHHHH-HHHHhcCCceEEEEEEeEe
Q 042009 128 WELLAQALMSLVTERLIEEEKLDSFNAPYYAPCPEEL-KMAIQKEGSFIIDRLGHFE 183 (262)
Q Consensus 128 ~~~l~~al~dmv~eGli~~e~~dsfn~P~y~ps~~Ev-~~~ie~~gsF~I~~le~~~ 183 (262)
=..|.++|.||+++|.|+++..-. .+-.|--|+.|. ..-+.+.=+|+ .++.++.
T Consensus 13 G~~L~~tLDe~v~~g~itp~la~~-VL~~FDKSi~~al~~~vk~kmsfk-g~L~tYr 67 (109)
T KOG3463|consen 13 GNALQKTLDELVSDGVITPSLAKK-VLEQFDKSINEALNDKVKNKMSFK-GKLDTYR 67 (109)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHH-HHHHHHHHHHHHHHHhcccceeee-eccceee
Confidence 357899999999999999874221 122222232222 12222333588 7887764
No 96
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=34.96 E-value=44 Score=26.79 Aligned_cols=19 Identities=16% Similarity=0.389 Sum_probs=15.8
Q ss_pred CCCCccceEEcccccccccC
Q 042009 30 FPDKSLHFVHSSSSLHWLSQ 49 (262)
Q Consensus 30 fP~~Svh~~~Ss~alHWLS~ 49 (262)
++ +.+|++++..++||+..
T Consensus 70 ~~-~~~D~I~~~~~l~~~~~ 88 (152)
T PF13847_consen 70 LE-EKFDIIISNGVLHHFPD 88 (152)
T ss_dssp SS-TTEEEEEEESTGGGTSH
T ss_pred cC-CCeeEEEEcCchhhccC
Confidence 44 89999999999988654
No 97
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=34.78 E-value=1.3e+02 Score=27.53 Aligned_cols=68 Identities=22% Similarity=0.186 Sum_probs=41.6
Q ss_pred HHhhccCceEEEEecccCCCCCCCchhhHHHHHHHHHHHHHHHhccCChhhhc-ccccCcccCCHHHHHHHHhcCCceEE
Q 042009 98 AAEMVAGGRMVLSLMGRRSIDPTTEESCYQWELLAQALMSLVTERLIEEEKLD-SFNAPYYAPCPEELKMAIQKEGSFII 176 (262)
Q Consensus 98 a~EL~~GG~mvl~~~g~~~~~~~~~~~~~~~~~l~~al~dmv~eGli~~e~~d-sfn~P~y~ps~~Ev~~~ie~~gsF~I 176 (262)
.+=|+|||.|++-=-|+.+-. .+.-- .+-.|++...- .=-.+.|+-+.+|+++++.+.| |..
T Consensus 170 ~~llKPGG~llfrDYg~~Dla-----------qlRF~-----~~~~i~~nfYVRgDGT~~YfF~~eeL~~~f~~ag-f~~ 232 (264)
T KOG2361|consen 170 RTLLKPGGSLLFRDYGRYDLA-----------QLRFK-----KGQCISENFYVRGDGTRAYFFTEEELDELFTKAG-FEE 232 (264)
T ss_pred HHHhCCCcEEEEeecccchHH-----------HHhcc-----CCceeecceEEccCCceeeeccHHHHHHHHHhcc-cch
Confidence 556789999998866664421 11000 12223322100 0124889999999999999998 777
Q ss_pred EEEEeE
Q 042009 177 DRLGHF 182 (262)
Q Consensus 177 ~~le~~ 182 (262)
+++++-
T Consensus 233 ~~~~~~ 238 (264)
T KOG2361|consen 233 VQLEVD 238 (264)
T ss_pred hcccce
Confidence 666654
No 98
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=34.09 E-value=54 Score=30.83 Aligned_cols=48 Identities=21% Similarity=0.337 Sum_probs=35.0
Q ss_pred cCCCC--ccceEEcccccccccCCCccccCCCCccccCCCceeecCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhccCce
Q 042009 29 LFPDK--SLHFVHSSSSLHWLSQVPPALESNATPAALNKGKIYISKSSPQCVLDAYSLQFQNNFLIFLKSRAAEMVAGGR 106 (262)
Q Consensus 29 lfP~~--Svh~~~Ss~alHWLS~~P~~~~~~~~s~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~ 106 (262)
.+|+. .+|++-+-.|||..=. + ++-..+||+.=++=|+|||.
T Consensus 138 ~~~~~~~~FDvVScQFalHY~Fe------------------------s------------e~~ar~~l~Nvs~~Lk~GG~ 181 (331)
T PF03291_consen 138 KLPPRSRKFDVVSCQFALHYAFE------------------------S------------EEKARQFLKNVSSLLKPGGY 181 (331)
T ss_dssp TSSSTTS-EEEEEEES-GGGGGS------------------------S------------HHHHHHHHHHHHHTEEEEEE
T ss_pred hccccCCCcceeehHHHHHHhcC------------------------C------------HHHHHHHHHHHHHhcCCCCE
Confidence 45655 9999999999998322 1 12235688888999999999
Q ss_pred EEEEec
Q 042009 107 MVLSLM 112 (262)
Q Consensus 107 mvl~~~ 112 (262)
++.|++
T Consensus 182 FIgT~~ 187 (331)
T PF03291_consen 182 FIGTTP 187 (331)
T ss_dssp EEEEEE
T ss_pred EEEEec
Confidence 999987
No 99
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=33.89 E-value=25 Score=30.51 Aligned_cols=37 Identities=27% Similarity=0.440 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHhccCChhhhcccccCcccCCHH
Q 042009 126 YQWELLAQALMSLVTERLIEEEKLDSFNAPYYAPCPE 162 (262)
Q Consensus 126 ~~~~~l~~al~dmv~eGli~~e~~dsfn~P~y~ps~~ 162 (262)
.+|..+.++|+.||.+|++..+++-.-|+=|-+||..
T Consensus 39 Iv~~tvKdvLQsLvDD~lV~~eKIgtSnyywsfps~a 75 (203)
T KOG3433|consen 39 IVWQTVKDVLQSLVDDGLVIKEKIGTSNYYWSFPSEA 75 (203)
T ss_pred eehhHHHHHHHHHhccchHHHHHhcccccccccchHH
Confidence 4577899999999999999999999999999999753
No 100
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=33.75 E-value=97 Score=29.95 Aligned_cols=34 Identities=15% Similarity=0.295 Sum_probs=21.8
Q ss_pred CCceEEeeccCccccccCCCCccceEEccccccc
Q 042009 13 FGRCYISGVAGSFYDRLFPDKSLHFVHSSSSLHW 46 (262)
Q Consensus 13 ~~~~f~~~vpgSFY~rlfP~~Svh~~~Ss~alHW 46 (262)
..++.+.-.-.......+|++|+|.++..+...|
T Consensus 171 L~NV~~i~~DA~~ll~~~~~~s~D~I~lnFPdPW 204 (390)
T PRK14121 171 LKNLLIINYDARLLLELLPSNSVEKIFVHFPVPW 204 (390)
T ss_pred CCcEEEEECCHHHhhhhCCCCceeEEEEeCCCCc
Confidence 4455444322322335789999999998776666
No 101
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=33.71 E-value=58 Score=28.11 Aligned_cols=12 Identities=33% Similarity=0.722 Sum_probs=10.4
Q ss_pred hhccCceEEEEe
Q 042009 100 EMVAGGRMVLSL 111 (262)
Q Consensus 100 EL~~GG~mvl~~ 111 (262)
-|+|||+|++..
T Consensus 165 ~LkpgG~lvi~~ 176 (212)
T PRK13942 165 QLKDGGIMVIPV 176 (212)
T ss_pred hhCCCcEEEEEE
Confidence 499999999975
No 102
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=33.18 E-value=77 Score=26.44 Aligned_cols=21 Identities=29% Similarity=0.585 Sum_probs=14.4
Q ss_pred HHHHHHHHhhccCceEEEEec
Q 042009 92 IFLKSRAAEMVAGGRMVLSLM 112 (262)
Q Consensus 92 ~FL~~Ra~EL~~GG~mvl~~~ 112 (262)
.+++.-.+-|+|||++++...
T Consensus 112 ~~l~~~~~~Lk~gG~lv~~~~ 132 (187)
T PRK08287 112 AIIDWSLAHLHPGGRLVLTFI 132 (187)
T ss_pred HHHHHHHHhcCCCeEEEEEEe
Confidence 445555667888888887654
No 103
>PRK09764 DNA-binding transcriptional repressor MngR; Provisional
Probab=32.58 E-value=49 Score=29.01 Aligned_cols=52 Identities=21% Similarity=0.302 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHhhccCceEEEEecccCCCCCCCchhhHHH----HHHHHHHHHHHHhccCChhh
Q 042009 84 LQFQNNFLIFLKSRAAEMVAGGRMVLSLMGRRSIDPTTEESCYQW----ELLAQALMSLVTERLIEEEK 148 (262)
Q Consensus 84 ~Q~~~D~~~FL~~Ra~EL~~GG~mvl~~~g~~~~~~~~~~~~~~~----~~l~~al~dmv~eGli~~e~ 148 (262)
.|.+.++..-+. ..++.||-+| |+..+.+..| ..+.+||.+|++||+|....
T Consensus 8 ~qi~~~L~~~I~--~g~~~~G~~L-----------PsE~eL~~~~~VSR~TvR~Al~~L~~eGli~r~~ 63 (240)
T PRK09764 8 RQIADRIREQIA--RGELKPGDAL-----------PTESALQTEFGVSRVTVRQALRQLVEQQILESIQ 63 (240)
T ss_pred HHHHHHHHHHHH--cCCCCCCCcC-----------CCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEec
Confidence 445555544333 5677777665 3333323222 47899999999999999665
No 104
>PF09597 IGR: IGR protein motif; InterPro: IPR019083 This entry is found in fungal and plant proteins and contains a conserved IGR motif. Its function is unknown.
Probab=32.01 E-value=43 Score=23.43 Aligned_cols=27 Identities=7% Similarity=0.242 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCce
Q 042009 80 DAYSLQFQNNFLIFLKSRAAEMVAGGR 106 (262)
Q Consensus 80 ~ay~~Q~~~D~~~FL~~Ra~EL~~GG~ 106 (262)
+.+++-|..||..++..++.+|+.-|.
T Consensus 13 ~~~~~kf~~~w~~lf~~~s~~LK~~GI 39 (57)
T PF09597_consen 13 EEHAEKFESDWEKLFTTSSKQLKELGI 39 (57)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHCCC
Confidence 447778899999999999999998775
No 105
>COG2188 PhnF Transcriptional regulators [Transcription]
Probab=31.67 E-value=56 Score=28.83 Aligned_cols=75 Identities=21% Similarity=0.272 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHhhccCceEEEEecccCCCCCCCchhhHH----HHHHHHHHHHHHHhccCChhhh-cccccCc-cc
Q 042009 85 QFQNNFLIFLKSRAAEMVAGGRMVLSLMGRRSIDPTTEESCYQ----WELLAQALMSLVTERLIEEEKL-DSFNAPY-YA 158 (262)
Q Consensus 85 Q~~~D~~~FL~~Ra~EL~~GG~mvl~~~g~~~~~~~~~~~~~~----~~~l~~al~dmv~eGli~~e~~-dsfn~P~-y~ 158 (262)
|.+.++..-+. ..++.||.+| |+..+.+.. -..+.+||.+|+++|+|....- -+|-.+- ..
T Consensus 11 qI~~~i~~~I~--~G~~~~G~~L-----------PsE~eLa~~f~VSR~TvRkAL~~L~~eGli~r~~G~GtfV~~~~~~ 77 (236)
T COG2188 11 QIAEDIRQRIE--SGELPPGDKL-----------PSERELAEQFGVSRMTVRKALDELVEEGLIVRRQGKGTFVASPKEQ 77 (236)
T ss_pred HHHHHHHHHHH--hCCCCCCCCC-----------CCHHHHHHHHCCcHHHHHHHHHHHHHCCcEEEEecCeeEEcCcccc
Confidence 34444443332 6688888776 322222222 2368999999999999986543 3344432 11
Q ss_pred C---CHHHHHHHHhcCC
Q 042009 159 P---CPEELKMAIQKEG 172 (262)
Q Consensus 159 p---s~~Ev~~~ie~~g 172 (262)
. ...-+.+.+...|
T Consensus 78 ~~~~~~~~f~e~~~~~g 94 (236)
T COG2188 78 SPLLELTSFSEELKSQG 94 (236)
T ss_pred ccccccccHHHHHHhCC
Confidence 1 2334555566555
No 106
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=31.67 E-value=40 Score=26.82 Aligned_cols=26 Identities=15% Similarity=0.250 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHhhccCceEEEEe
Q 042009 86 FQNNFLIFLKSRAAEMVAGGRMVLSL 111 (262)
Q Consensus 86 ~~~D~~~FL~~Ra~EL~~GG~mvl~~ 111 (262)
-..-+.+|++.=+.-|+|||.|||.-
T Consensus 19 GD~Gl~~~f~~~~~~L~pGG~lilEp 44 (110)
T PF06859_consen 19 GDEGLKRFFRRIYSLLRPGGILILEP 44 (110)
T ss_dssp HHHHHHHHHHHHHHHEEEEEEEEEE-
T ss_pred cCHHHHHHHHHHHHhhCCCCEEEEeC
Confidence 34556777887789999999999983
No 107
>smart00545 JmjN Small domain found in the jumonji family of transcription factors. To date, this domain always co-occurs with the JmjC domain (although the reverse is not true).
Probab=31.60 E-value=26 Score=22.93 Aligned_cols=16 Identities=31% Similarity=0.534 Sum_probs=14.0
Q ss_pred cCcccCCHHHHHHHHh
Q 042009 154 APYYAPCPEELKMAIQ 169 (262)
Q Consensus 154 ~P~y~ps~~Ev~~~ie 169 (262)
+|.+.||.+|++..+.
T Consensus 2 iPvf~Pt~eEF~Dp~~ 17 (42)
T smart00545 2 IPVFYPTMEEFKDPLA 17 (42)
T ss_pred CCeEcCCHHHHHCHHH
Confidence 6999999999988776
No 108
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=29.89 E-value=1.2e+02 Score=27.87 Aligned_cols=70 Identities=16% Similarity=0.217 Sum_probs=36.4
Q ss_pred HHhhccCceEEEEecccCCCCCCCchhhHHHHHHHHHHHHHHHhccCChhhhcccccCcccCCHHHHHHHHhcCCceEEE
Q 042009 98 AAEMVAGGRMVLSLMGRRSIDPTTEESCYQWELLAQALMSLVTERLIEEEKLDSFNAPYYAPCPEELKMAIQKEGSFIID 177 (262)
Q Consensus 98 a~EL~~GG~mvl~~~g~~~~~~~~~~~~~~~~~l~~al~dmv~eGli~~e~~dsfn~P~y~ps~~Ev~~~ie~~gsF~I~ 177 (262)
-.-|.||..|+++-...+.. .+ ..+.+...+ .+-..|.+.||.+||.+.++ | |++.
T Consensus 177 ~d~lapGS~L~ish~t~d~~----p~---~~~~~~~~~--------------~~~~~~~~~Rs~~ei~~~f~--g-~elv 232 (267)
T PF04672_consen 177 RDALAPGSYLAISHATDDGA----PE---RAEALEAVY--------------AQAGSPGRPRSREEIAAFFD--G-LELV 232 (267)
T ss_dssp HCCS-TT-EEEEEEEB-TTS----HH---HHHHHHHHH--------------HHCCS----B-HHHHHHCCT--T-SEE-
T ss_pred HHhCCCCceEEEEecCCCCC----HH---HHHHHHHHH--------------HcCCCCceecCHHHHHHHcC--C-CccC
Confidence 67799999999998865321 10 112222222 22467999999999999998 4 7766
Q ss_pred EEEeEeec-CCCCcc
Q 042009 178 RLGHFEID-WDGGVE 191 (262)
Q Consensus 178 ~le~~~~~-w~~~~~ 191 (262)
.=.+..++ |.|...
T Consensus 233 ePGlv~~~~WrP~~~ 247 (267)
T PF04672_consen 233 EPGLVPVPRWRPDGP 247 (267)
T ss_dssp TT-SEEGGGSS-STT
T ss_pred CCceecccccCCCCC
Confidence 55555554 877443
No 109
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=29.87 E-value=2.8e+02 Score=24.12 Aligned_cols=28 Identities=25% Similarity=0.456 Sum_probs=21.5
Q ss_pred CcccCCHHHHHHHHhcCCceEEEEEEeEee
Q 042009 155 PYYAPCPEELKMAIQKEGSFIIDRLGHFEI 184 (262)
Q Consensus 155 P~y~ps~~Ev~~~ie~~gsF~I~~le~~~~ 184 (262)
|-|.-+.+|+++.+. +.|+|+.++....
T Consensus 166 Pp~~~~~~el~~~~~--~~~~i~~~~~~~~ 193 (218)
T PRK13255 166 PPFSVSDEEVEALYA--GCFEIELLERQDV 193 (218)
T ss_pred CCCCCCHHHHHHHhc--CCceEEEeeeccc
Confidence 557889999999985 3389888886543
No 110
>KOG3052 consensus Cytochrome c1 [Energy production and conversion]
Probab=29.78 E-value=85 Score=28.76 Aligned_cols=51 Identities=16% Similarity=0.359 Sum_probs=36.3
Q ss_pred ccCccccccCCCCccceEEcccccccccCCCccccCCCCccccCCCceeecCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 042009 21 VAGSFYDRLFPDKSLHFVHSSSSLHWLSQVPPALESNATPAALNKGKIYISKSSPQCVLDAYSLQFQNNFLIFLKSRA 98 (262)
Q Consensus 21 vpgSFY~rlfP~~Svh~~~Ss~alHWLS~~P~~~~~~~~s~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra 98 (262)
-+|..|+.-||-..|-+ |..+.|+ -|-+....|+. ..|..||-.+||+--+
T Consensus 213 ~~G~~fNPyFpGgaIaM-------------a~~l~de---------~vEyeDgtPAT-----~sQ~aKDV~~FL~Was 263 (311)
T KOG3052|consen 213 REGLYFNPYFPGGAIAM-------------AKVLFDE---------VVEYEDGTPAT-----MSQMAKDVVTFLHWAS 263 (311)
T ss_pred CCCcccCCCCCCccccc-------------chhhccc---------ceeecCCCchh-----HHHHHHHHHHHHHhcc
Confidence 47999999999998753 5555542 34444444654 5789999999999543
No 111
>PF06256 Nucleo_LEF-12: Nucleopolyhedrovirus LEF-12 protein; InterPro: IPR009365 This family consists of several Nucleopolyhedrovirus late expression factor-12 (LEF-12) proteins. The function of this family is unknown [,].
Probab=29.64 E-value=57 Score=28.22 Aligned_cols=31 Identities=16% Similarity=0.121 Sum_probs=26.3
Q ss_pred hhHHHHHHHHHHHHHHHhccCChhhhccccc
Q 042009 124 SCYQWELLAQALMSLVTERLIEEEKLDSFNA 154 (262)
Q Consensus 124 ~~~~~~~l~~al~dmv~eGli~~e~~dsfn~ 154 (262)
...+.+.+..+|++|+..|.|++.+.++.-+
T Consensus 12 v~~~~~~~~~~ld~M~~~geit~~Da~sLCl 42 (185)
T PF06256_consen 12 VQDFADMMKRTLDEMVEHGEITRADADSLCL 42 (185)
T ss_pred HHHHHHHHHHHHHHHHHcCCcchhhhcceee
Confidence 3457789999999999999999999887644
No 112
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=29.56 E-value=1.4e+02 Score=27.34 Aligned_cols=27 Identities=15% Similarity=0.268 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhhccCceEEEEecccCC
Q 042009 90 FLIFLKSRAAEMVAGGRMVLSLMGRRS 116 (262)
Q Consensus 90 ~~~FL~~Ra~EL~~GG~mvl~~~g~~~ 116 (262)
...||+.=++-|+|||+|++.+-...+
T Consensus 156 ~~~~L~~i~~~L~pgG~~lig~d~~~~ 182 (301)
T TIGR03438 156 AVAFLRRIRQLLGPGGGLLIGVDLVKD 182 (301)
T ss_pred HHHHHHHHHHhcCCCCEEEEeccCCCC
Confidence 345565556679999999987765544
No 113
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=29.22 E-value=1.2e+02 Score=28.61 Aligned_cols=54 Identities=11% Similarity=0.207 Sum_probs=35.0
Q ss_pred cCccccccCCCCccceEEcccccccccCCCccccCCCCccccCCCceeecCCCcHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042009 22 AGSFYDRLFPDKSLHFVHSSSSLHWLSQVPPALESNATPAALNKGKIYISKSSPQCVLDAYSLQFQNNFLIFLKSRAAEM 101 (262)
Q Consensus 22 pgSFY~rlfP~~Svh~~~Ss~alHWLS~~P~~~~~~~~s~~~nkg~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL 101 (262)
++..+.. .+++.|+++|+-.+||.-. . . ..+...|++.=++=|
T Consensus 251 ~~D~~~~--~~~~fDlIvsNPPFH~g~~------~------------------~-----------~~~~~~~i~~a~~~L 293 (342)
T PRK09489 251 ASNVFSD--IKGRFDMIISNPPFHDGIQ------T------------------S-----------LDAAQTLIRGAVRHL 293 (342)
T ss_pred Ecccccc--cCCCccEEEECCCccCCcc------c------------------c-----------HHHHHHHHHHHHHhc
Confidence 3444443 3678999999999997211 0 0 123345566657789
Q ss_pred ccCceEEEEec
Q 042009 102 VAGGRMVLSLM 112 (262)
Q Consensus 102 ~~GG~mvl~~~ 112 (262)
+|||.|+++..
T Consensus 294 kpgG~L~iVan 304 (342)
T PRK09489 294 NSGGELRIVAN 304 (342)
T ss_pred CcCCEEEEEEe
Confidence 99999988753
No 114
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=28.94 E-value=69 Score=27.41 Aligned_cols=14 Identities=21% Similarity=0.532 Sum_probs=11.2
Q ss_pred HhhccCceEEEEec
Q 042009 99 AEMVAGGRMVLSLM 112 (262)
Q Consensus 99 ~EL~~GG~mvl~~~ 112 (262)
+-|+|||+|++.+.
T Consensus 161 ~~L~~gG~lvi~~~ 174 (205)
T PRK13944 161 RQLKDGGVLVIPVE 174 (205)
T ss_pred HhcCcCcEEEEEEc
Confidence 34999999998764
No 115
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=28.57 E-value=28 Score=29.22 Aligned_cols=27 Identities=15% Similarity=0.402 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHH----hhccCceEEEEeccc
Q 042009 88 NNFLIFLKSRAA----EMVAGGRMVLSLMGR 114 (262)
Q Consensus 88 ~D~~~FL~~Ra~----EL~~GG~mvl~~~g~ 114 (262)
.+|..++..+.+ -|+|||.|++.+..+
T Consensus 29 ~~y~~~~~~~~~~~~rvLk~~g~~~i~~~~~ 59 (231)
T PF01555_consen 29 EEYLEWMEEWLKECYRVLKPGGSIFIFIDDR 59 (231)
T ss_dssp HHHHHHHHHHHHHHHHHEEEEEEEEEEE-CC
T ss_pred HHHHHHHHHHHHHHHhhcCCCeeEEEEecch
Confidence 344444444444 469999998876644
No 116
>PRK14967 putative methyltransferase; Provisional
Probab=27.98 E-value=2.1e+02 Score=24.67 Aligned_cols=69 Identities=16% Similarity=0.243 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHhhccCceEEEEecccCCCCCCCchhhHHHHHHHHHHHHHHHhccCChhhhcccccCcccCCHHHHHHHH
Q 042009 89 NFLIFLKSRAAEMVAGGRMVLSLMGRRSIDPTTEESCYQWELLAQALMSLVTERLIEEEKLDSFNAPYYAPCPEELKMAI 168 (262)
Q Consensus 89 D~~~FL~~Ra~EL~~GG~mvl~~~g~~~~~~~~~~~~~~~~~l~~al~dmv~eGli~~e~~dsfn~P~y~ps~~Ev~~~i 168 (262)
++..|++.=.+=|+|||++++......+ +.++++.+...| +.-+.+.+..+|+ .+..-.....+
T Consensus 137 ~~~~~l~~a~~~Lk~gG~l~~~~~~~~~--------------~~~~~~~l~~~g-~~~~~~~~~~~~~-~~~~~~~~~~~ 200 (223)
T PRK14967 137 VLDRLCDAAPALLAPGGSLLLVQSELSG--------------VERTLTRLSEAG-LDAEVVASQWIPF-GPVLRARAAWL 200 (223)
T ss_pred HHHHHHHHHHHhcCCCcEEEEEEecccC--------------HHHHHHHHHHCC-CCeEEEEeeccCc-cHHHHHHHHHH
Confidence 4556666556779999999876544321 123334444344 3455555666664 33333444556
Q ss_pred hcCCc
Q 042009 169 QKEGS 173 (262)
Q Consensus 169 e~~gs 173 (262)
++.|.
T Consensus 201 ~~~~~ 205 (223)
T PRK14967 201 ERRGL 205 (223)
T ss_pred HHcCC
Confidence 66663
No 117
>PRK11402 DNA-binding transcriptional regulator FrlR; Provisional
Probab=27.88 E-value=67 Score=28.10 Aligned_cols=51 Identities=22% Similarity=0.313 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHhhccCceEEEEecccCCCCCCCchhhHH----HHHHHHHHHHHHHhccCChhh
Q 042009 85 QFQNNFLIFLKSRAAEMVAGGRMVLSLMGRRSIDPTTEESCYQ----WELLAQALMSLVTERLIEEEK 148 (262)
Q Consensus 85 Q~~~D~~~FL~~Ra~EL~~GG~mvl~~~g~~~~~~~~~~~~~~----~~~l~~al~dmv~eGli~~e~ 148 (262)
|.+.++..-+. +.++.||-+| |+..+.+.. -..+.+||.+|++||+|....
T Consensus 13 qI~~~i~~~I~--~G~~~~g~kL-----------PsE~eLa~~~~VSR~TvR~Al~~L~~eGli~r~~ 67 (241)
T PRK11402 13 TVRQRLLDDIA--QGVYQAGQQI-----------PTENELCTQYNVSRITIRKAISDLVADGVLIRWQ 67 (241)
T ss_pred HHHHHHHHHHH--cCCCCCCCcC-----------cCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEec
Confidence 33444443333 5677777665 333332222 247899999999999998776
No 118
>PRK11524 putative methyltransferase; Provisional
Probab=27.10 E-value=1.3e+02 Score=27.23 Aligned_cols=22 Identities=9% Similarity=0.132 Sum_probs=15.8
Q ss_pred HHHHHHHHHHhhccCceEEEEe
Q 042009 90 FLIFLKSRAAEMVAGGRMVLSL 111 (262)
Q Consensus 90 ~~~FL~~Ra~EL~~GG~mvl~~ 111 (262)
+..+|+.=.+=|+|||.|++..
T Consensus 59 l~~~l~~~~rvLK~~G~i~i~~ 80 (284)
T PRK11524 59 LYEWIDECHRVLKKQGTMYIMN 80 (284)
T ss_pred HHHHHHHHHHHhCCCcEEEEEc
Confidence 4455555566789999999863
No 119
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=26.13 E-value=89 Score=28.08 Aligned_cols=71 Identities=14% Similarity=0.162 Sum_probs=43.3
Q ss_pred HHHHHhhccCceEEEEecccCCCCCCCchhhHHHHHHHHHHHHHHHhccCChhhhcccccCcccCCHHHHHHHHhcCCce
Q 042009 95 KSRAAEMVAGGRMVLSLMGRRSIDPTTEESCYQWELLAQALMSLVTERLIEEEKLDSFNAPYYAPCPEELKMAIQKEGSF 174 (262)
Q Consensus 95 ~~Ra~EL~~GG~mvl~~~g~~~~~~~~~~~~~~~~~l~~al~dmv~eGli~~e~~dsfn~P~y~ps~~Ev~~~ie~~gsF 174 (262)
+.=.+=|+|||++++.=-|+..- +..+.+|+...+-+-.+...|-. =-.|.-+.+++. .|
T Consensus 166 ~e~~rlLRpgG~iifiEHva~~y----~~~n~i~q~v~ep~~~~~~dGC~---------------ltrd~~e~Leda-~f 225 (252)
T KOG4300|consen 166 NEVRRLLRPGGRIIFIEHVAGEY----GFWNRILQQVAEPLWHLESDGCV---------------LTRDTGELLEDA-EF 225 (252)
T ss_pred HHHHHhcCCCcEEEEEecccccc----hHHHHHHHHHhchhhheeccceE---------------EehhHHHHhhhc-cc
Confidence 33367799999999997776542 11344566666665566666621 112444566644 48
Q ss_pred EEEEEEeEeec
Q 042009 175 IIDRLGHFEID 185 (262)
Q Consensus 175 ~I~~le~~~~~ 185 (262)
++..++.+..+
T Consensus 226 ~~~~~kr~~~~ 236 (252)
T KOG4300|consen 226 SIDSCKRFNFG 236 (252)
T ss_pred ccchhhcccCC
Confidence 88887766543
No 120
>COG2821 MltA Membrane-bound lytic murein transglycosylase [Cell envelope biogenesis, outer membrane]
Probab=26.07 E-value=74 Score=30.60 Aligned_cols=60 Identities=13% Similarity=0.346 Sum_probs=40.1
Q ss_pred hccCceEEEEecccCCCCCCCchhhHHHHHHHHHHHHHHHhccCChhhhcccccC----cccCCHHHHHHHHhcCCceE
Q 042009 101 MVAGGRMVLSLMGRRSIDPTTEESCYQWELLAQALMSLVTERLIEEEKLDSFNAP----YYAPCPEELKMAIQKEGSFI 175 (262)
Q Consensus 101 L~~GG~mvl~~~g~~~~~~~~~~~~~~~~~l~~al~dmv~eGli~~e~~dsfn~P----~y~ps~~Ev~~~ie~~gsF~ 175 (262)
+-.|+++-+...|.++ +-|.-+...|.| +|.|+.++ ++++ |....++|+.++++++-||-
T Consensus 201 ~~dG~~~r~~YAgkng---------~py~sIGr~Lid---~Gei~~~~---~SMq~Ir~W~~~np~rv~elL~~N~sfV 264 (373)
T COG2821 201 LGDGRLNRFGYAGKNG---------HPYTSIGRLLID---RGEIPKEE---MSMQAIRDWFEANPQRVDELLEQNPSFV 264 (373)
T ss_pred cCCCCEEEEEEcccCC---------CcchhHHHHHHH---cCCCCccc---CCHHHHHHHHHHCHHHHHHHHhhCCceE
Confidence 3445555555555433 235556666555 99999997 5555 34457999999999998864
No 121
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=25.91 E-value=98 Score=26.86 Aligned_cols=20 Identities=25% Similarity=0.537 Sum_probs=14.7
Q ss_pred cCCCCccceEEcccccccccC
Q 042009 29 LFPDKSLHFVHSSSSLHWLSQ 49 (262)
Q Consensus 29 lfP~~Svh~~~Ss~alHWLS~ 49 (262)
-+| ...|+++|...+|.|..
T Consensus 90 ~~~-~~yD~I~st~v~~fL~~ 109 (192)
T PF03848_consen 90 DFP-EEYDFIVSTVVFMFLQR 109 (192)
T ss_dssp S-T-TTEEEEEEESSGGGS-G
T ss_pred ccc-CCcCEEEEEEEeccCCH
Confidence 344 67899999999998763
No 122
>PF08714 Fae: Formaldehyde-activating enzyme (Fae); InterPro: IPR014826 This family consists of formaldehyde-activating enzyme, or the corresponding domain of longer, bifunctional proteins. It links formaldehyde to the C1 carrier tetrahydromethanopterin (H4MPT), an analog of tetrahydrofolate, and is common among species with H4MPT []. The ribulose monophosphate (RuMP) pathway, which removes the toxic metabolite formaldehyde by assimilation, runs in the opposite direction in some species to produce ribulose 5-phosphate for nucleotide biosynthesis, leaving formaldehyde as an additional metabolite. In these species, formaldehyde activating enzyme may occur as a fusion protein with D-arabino 3-hexulose 6-phosphate formaldehyde lyase from the RuMP pathway.; GO: 0016840 carbon-nitrogen lyase activity, 0016051 carbohydrate biosynthetic process; PDB: 1Y60_A 1Y5Y_D.
Probab=25.85 E-value=58 Score=27.56 Aligned_cols=24 Identities=25% Similarity=0.426 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHhccCChhhhccc
Q 042009 129 ELLAQALMSLVTERLIEEEKLDSF 152 (262)
Q Consensus 129 ~~l~~al~dmv~eGli~~e~~dsf 152 (262)
..++++..|.|+||+|++++.|..
T Consensus 81 aavA~AVaD~V~eG~iP~~~a~dl 104 (159)
T PF08714_consen 81 AAVAKAVADAVEEGIIPKDEADDL 104 (159)
T ss_dssp HHHHHHHHHHHHTTSS-TTTGGGE
T ss_pred HHHHHHHHHHHHcCCCChhhcCcE
Confidence 367999999999999999976654
No 123
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=25.51 E-value=1.4e+02 Score=25.21 Aligned_cols=19 Identities=21% Similarity=0.410 Sum_probs=10.3
Q ss_pred HHHHHHHHhhccCceEEEE
Q 042009 92 IFLKSRAAEMVAGGRMVLS 110 (262)
Q Consensus 92 ~FL~~Ra~EL~~GG~mvl~ 110 (262)
.+|+.=.+-|+|||++++.
T Consensus 126 ~~l~~~~~~LkpgG~lv~~ 144 (198)
T PRK00377 126 EIISASWEIIKKGGRIVID 144 (198)
T ss_pred HHHHHHHHHcCCCcEEEEE
Confidence 3444444556666666653
No 124
>PF10925 DUF2680: Protein of unknown function (DUF2680); InterPro: IPR024485 Members in this family of proteins are annotated as YckD however currently no function is known.
Probab=25.51 E-value=73 Score=22.35 Aligned_cols=27 Identities=26% Similarity=0.297 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHhccCChhhhccc
Q 042009 126 YQWELLAQALMSLVTERLIEEEKLDSF 152 (262)
Q Consensus 126 ~~~~~l~~al~dmv~eGli~~e~~dsf 152 (262)
.|+++=.+.++..|..|.|++|+-|.+
T Consensus 15 qm~e~kK~~idk~Ve~G~iTqeqAd~i 41 (59)
T PF10925_consen 15 QMLELKKQIIDKYVEAGVITQEQADAI 41 (59)
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 467788899999999999999987765
No 125
>TIGR03126 one_C_fae formaldehyde-activating enzyme. This family consists of formaldehyde-activating enzyme, or the corresponding domain of longer, bifunctional proteins. It links formaldehyde to the C1 carrier tetrahydromethanopterin (H4MPT), an analog of tetrahydrofolate, and is common among species with H4MPT. The ribulose monophosphate (RuMP) pathway, which removes the toxic metabolite formaldehyde by assimilation, runs in the opposite direction in some species to produce ribulose 5-phosphate for nucleotide biosynthesis, leaving formaldehyde as an additional metabolite. In these species, formaldehyde activating enzyme may occur as a fusion protein with D-arabino 3-hexulose 6-phosphate formaldehyde lyase from the RuMP pathway.
Probab=25.46 E-value=54 Score=27.75 Aligned_cols=24 Identities=25% Similarity=0.414 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHhccCChhhhccc
Q 042009 129 ELLAQALMSLVTERLIEEEKLDSF 152 (262)
Q Consensus 129 ~~l~~al~dmv~eGli~~e~~dsf 152 (262)
..++++..|.|.||+|++++.|..
T Consensus 83 ~avA~AVaD~V~eG~iP~~~addl 106 (160)
T TIGR03126 83 AAVAKAVADSVEEGIIPKDEADDL 106 (160)
T ss_pred HHHHHHHHHHHHcCCCChhhhCcE
Confidence 367899999999999999976554
No 126
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=25.15 E-value=1.7e+02 Score=27.10 Aligned_cols=29 Identities=14% Similarity=0.138 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHhhccCceEEEEec
Q 042009 84 LQFQNNFLIFLKSRAAEMVAGGRMVLSLM 112 (262)
Q Consensus 84 ~Q~~~D~~~FL~~Ra~EL~~GG~mvl~~~ 112 (262)
.+=-..+..+|..=.+=|+|||+|++.-.
T Consensus 209 N~El~~L~~~L~~~~~~L~~gGrl~visf 237 (296)
T PRK00050 209 NDELEELERALEAALDLLKPGGRLAVISF 237 (296)
T ss_pred HhhHHHHHHHHHHHHHHhcCCCEEEEEec
Confidence 33345688889888899999999988754
No 127
>TIGR02124 hypE hydrogenase expression/formation protein HypE. This family contains HypE (or HupE), a protein required for expression of catalytically active hydrogenase in many systems. It appears to be an accessory protein involved in maturation rather than a regulatory protein involved in expression. HypE shows considerable homology to the thiamine-monophosphate kinase ThiL (TIGR01379) and other enzymes.
Probab=25.13 E-value=2.4e+02 Score=25.88 Aligned_cols=42 Identities=10% Similarity=-0.073 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHhccCChhhhcccccCcccCCHHHHHHHHh
Q 042009 127 QWELLAQALMSLVTERLIEEEKLDSFNAPYYAPCPEELKMAIQ 169 (262)
Q Consensus 127 ~~~~l~~al~dmv~eGli~~e~~dsfn~P~y~ps~~Ev~~~ie 169 (262)
-|.++..++.|++..|-.+..-++++++|...+ .++++++++
T Consensus 54 G~~av~~n~sDiaamGa~P~~~~~~l~lp~~~~-~~~l~~~~~ 95 (320)
T TIGR02124 54 GKLAVCGTVNDVAVSGAKPLYLSCGFILEEGFP-IEDLERIVK 95 (320)
T ss_pred HHHHHHHHHHHHHHcCCcchhhEEEEEcCCCCC-HHHHHHHHH
Confidence 488999999999999999999999999996654 666666666
No 128
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=24.54 E-value=44 Score=24.75 Aligned_cols=20 Identities=40% Similarity=0.546 Sum_probs=13.2
Q ss_pred CCCCccceEEcccc-cccccC
Q 042009 30 FPDKSLHFVHSSSS-LHWLSQ 49 (262)
Q Consensus 30 fP~~Svh~~~Ss~a-lHWLS~ 49 (262)
++.++.|+++++++ +|.+++
T Consensus 63 ~~~~~~D~v~~~~~~~~~~~~ 83 (101)
T PF13649_consen 63 FSDGKFDLVVCSGLSLHHLSP 83 (101)
T ss_dssp HHSSSEEEEEE-TTGGGGSSH
T ss_pred ccCCCeeEEEEcCCccCCCCH
Confidence 46778888888655 776543
No 129
>PF13260 DUF4051: Protein of unknown function (DUF4051)
Probab=24.41 E-value=1.2e+02 Score=20.65 Aligned_cols=27 Identities=19% Similarity=0.336 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCc
Q 042009 79 LDAYSLQFQNNFLIFLKSRAAEMVAGG 105 (262)
Q Consensus 79 ~~ay~~Q~~~D~~~FL~~Ra~EL~~GG 105 (262)
.|.|-+.|++|-...|.+|.+=++..|
T Consensus 22 mkrycrafrqdrdallear~kl~~r~~ 48 (54)
T PF13260_consen 22 MKRYCRAFRQDRDALLEARNKLFRRSG 48 (54)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhccc
Confidence 467999999999999999999776544
No 130
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=24.32 E-value=55 Score=30.20 Aligned_cols=16 Identities=13% Similarity=0.270 Sum_probs=11.6
Q ss_pred HHhhccCceEEEEecccCC
Q 042009 98 AAEMVAGGRMVLSLMGRRS 116 (262)
Q Consensus 98 a~EL~~GG~mvl~~~g~~~ 116 (262)
++-|+|||.|+ +|..+
T Consensus 249 ~~~L~pgG~L~---lG~sE 264 (287)
T PRK10611 249 VPLLKPDGLLF---AGHSE 264 (287)
T ss_pred HHHhCCCcEEE---EeCcc
Confidence 78899999774 45543
No 131
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=24.19 E-value=2.3e+02 Score=23.53 Aligned_cols=24 Identities=13% Similarity=0.178 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHhhccCceEEEEe
Q 042009 88 NNFLIFLKSRAAEMVAGGRMVLSL 111 (262)
Q Consensus 88 ~D~~~FL~~Ra~EL~~GG~mvl~~ 111 (262)
.+...+|+.=.+-|+|||++++..
T Consensus 123 ~~~~~~l~~~~~~LkpgG~lvi~~ 146 (188)
T TIGR00438 123 DLVELALDIAKEVLKPKGNFVVKV 146 (188)
T ss_pred HHHHHHHHHHHHHccCCCEEEEEE
Confidence 356677877788899999999975
No 132
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=23.94 E-value=79 Score=27.02 Aligned_cols=24 Identities=13% Similarity=0.110 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHhhccCceEEEEec
Q 042009 89 NFLIFLKSRAAEMVAGGRMVLSLM 112 (262)
Q Consensus 89 D~~~FL~~Ra~EL~~GG~mvl~~~ 112 (262)
++..|++.-++=|+|||++++...
T Consensus 123 ~~~~~l~~~~~~LkpGG~lv~~~~ 146 (187)
T PRK00107 123 SLSDLVELCLPLLKPGGRFLALKG 146 (187)
T ss_pred CHHHHHHHHHHhcCCCeEEEEEeC
Confidence 456788888999999999998853
No 133
>PF09119 SicP-binding: SicP binding; InterPro: IPR015203 Members of this family bind the chaperone SicP, which is required both to maintain the stability of SptP, as well as to ensure the eventual secretion of the protein. The domain is found in the Salmonella effector protein SptP, which interacts with SicP chaperone dimers mainly through four regions of its chaperone-binding domain. The structure of the SptP-SicP complex contains four molecules of SicP, aligned in a linear fashion and arranged in two sets of tightly bound homodimers that bind two SptP molecules. The SicP homodimers do not interact with each other, but are held together by a molecular interface formed between two SptP molecules. Each SptP molecule is wrapped around by three SicP chaperones (two chaperones from one homodimer and a third one from the opposite homodimer pair) []. ; GO: 0005615 extracellular space; PDB: 1JYO_F.
Probab=23.61 E-value=28 Score=26.20 Aligned_cols=45 Identities=24% Similarity=0.426 Sum_probs=23.9
Q ss_pred eEEcccccccccCCCccccCCCCccccCCCceeecCCCcHHHHHHHH----HHHHHHHHHHHHHHHHhh
Q 042009 37 FVHSSSSLHWLSQVPPALESNATPAALNKGKIYISKSSPQCVLDAYS----LQFQNNFLIFLKSRAAEM 101 (262)
Q Consensus 37 ~~~Ss~alHWLS~~P~~~~~~~~s~~~nkg~i~~~~~s~~~v~~ay~----~Q~~~D~~~FL~~Ra~EL 101 (262)
..|++--|+||+++|- .. ++ ..|++ |. .|-++-+..||++=+++.
T Consensus 3 e~f~~kvlt~L~~~PL--lk----------N~-------~AVq~-~~e~~~~~nqktL~vFl~ALa~~Y 51 (81)
T PF09119_consen 3 EKFKSKVLTWLGKIPL--LK----------NT-------NAVQK-YVENQRVENQKTLQVFLEALAERY 51 (81)
T ss_dssp S-BTTB-EEEEE------TT-----------H-------HHHHH-HHHCS--S-HHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHcCcc--cc----------cH-------HHHHH-HHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3577888999999994 32 11 22322 33 456778889999877764
No 134
>PRK01099 rpoK DNA-directed RNA polymerase subunit K; Provisional
Probab=23.27 E-value=2e+02 Score=20.28 Aligned_cols=45 Identities=13% Similarity=0.152 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHhhccCceEEEEecccCCCCCCCchhhHHHHHHHHHHHHHHHhccCChh
Q 042009 89 NFLIFLKSRAAEMVAGGRMVLSLMGRRSIDPTTEESCYQWELLAQALMSLVTERLIEEE 147 (262)
Q Consensus 89 D~~~FL~~Ra~EL~~GG~mvl~~~g~~~~~~~~~~~~~~~~~l~~al~dmv~eGli~~e 147 (262)
++...+..||++|..|..-.+..-+ + -+-+..|++++ ++|.|+-+
T Consensus 11 e~a~i~akRArQl~~Ga~~lv~~~~--~-----------~kPv~iAl~Ei-~~gkI~~~ 55 (62)
T PRK01099 11 ERARIIGARALQISMGAPVLIDIPE--S-----------TDPLDIAEEEF-KRGVLPIT 55 (62)
T ss_pred HHHHHHHHHHHHHHcCCCceecCCC--C-----------CCHHHHHHHHH-HcCCCCeE
Confidence 4567788999999988765554321 1 12467888887 58888643
No 135
>PF09612 HtrL_YibB: Bacterial protein of unknown function (HtrL_YibB); InterPro: IPR011735 The protein from this rare, uncharacterised protein family is designated HtrL or YibB in Escherichia coli, where its gene is found in a region of LPS core biosynthesis genes []. Homologs are found in Shigella flexneri, Campylobacter jejuni, and Caenorhabditis elegans only. The htrL gene may represent an insertion to the LPS core biosynthesis region, rather than an LPS biosynthetic protein.
Probab=22.99 E-value=1.5e+02 Score=27.25 Aligned_cols=42 Identities=19% Similarity=0.329 Sum_probs=30.4
Q ss_pred HHHhhccCceEEEEecccCCCCCCCchhhHHHHHHHHHHHHHHHhccCChhh
Q 042009 97 RAAEMVAGGRMVLSLMGRRSIDPTTEESCYQWELLAQALMSLVTERLIEEEK 148 (262)
Q Consensus 97 Ra~EL~~GG~mvl~~~g~~~~~~~~~~~~~~~~~l~~al~dmv~eGli~~e~ 148 (262)
+..-.+.||.++-. . ..-..++.++.++..+|...|+++.++
T Consensus 190 ~~~~~I~GG~i~g~----~------~~w~~F~~l~~~~~~~lL~~g~vDDDQ 231 (271)
T PF09612_consen 190 NNEVYIIGGFIVGS----K------EKWKRFYKLIHESQKSLLRCGIVDDDQ 231 (271)
T ss_pred cChhEEEeeEEEec----H------HHHHHHHHHHHHHHHHHHhcCCccchh
Confidence 34556778776421 1 113457899999999999999999885
No 136
>PRK13699 putative methylase; Provisional
Probab=22.96 E-value=1.6e+02 Score=25.99 Aligned_cols=19 Identities=11% Similarity=-0.171 Sum_probs=13.2
Q ss_pred HHHHHHHHhhccCceEEEE
Q 042009 92 IFLKSRAAEMVAGGRMVLS 110 (262)
Q Consensus 92 ~FL~~Ra~EL~~GG~mvl~ 110 (262)
.+|+.=.+-|+|||.|++.
T Consensus 53 ~~l~E~~RVLKpgg~l~if 71 (227)
T PRK13699 53 PACNEMYRVLKKDALMVSF 71 (227)
T ss_pred HHHHHHHHHcCCCCEEEEE
Confidence 4444445679999998864
No 137
>cd01671 CARD Caspase activation and recruitment domain: a protein-protein interaction domain. Caspase activation and recruitment domains (CARDs) are death domains (DDs) found associated with caspases. Caspases are aspartate-specific cysteine proteases with functions in apoptosis, immune signaling, inflammation, and host-defense mechanisms. In addition to caspases, proteins containing CARDs include adaptor proteins such as RAIDD, CARD9, and RIG-I-like helicases, which can form mutliprotein complexes and play important roles in mediating the signals to induce immune and inflammatory responses. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=22.39 E-value=1.2e+02 Score=21.55 Aligned_cols=38 Identities=11% Similarity=0.234 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHhccCChhhhcccccCcccCCHHHHHHHHh
Q 042009 130 LLAQALMSLVTERLIEEEKLDSFNAPYYAPCPEELKMAIQ 169 (262)
Q Consensus 130 ~l~~al~dmv~eGli~~e~~dsfn~P~y~ps~~Ev~~~ie 169 (262)
.+...+..|.++|+++.++.+...-+.. +.+-.+..|+
T Consensus 14 ~~~~il~~L~~~~vlt~~e~~~i~~~~~--~~~k~~~Lld 51 (80)
T cd01671 14 DVEDVLDHLLSDGVLTEEEYEKIRSEST--RQDKARKLLD 51 (80)
T ss_pred cHHHHHHHHHHcCCCCHHHHHHHHcCCC--hHHHHHHHHH
Confidence 5677899999999999999888766544 4444444444
No 138
>KOG4068 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.33 E-value=97 Score=26.37 Aligned_cols=42 Identities=19% Similarity=0.092 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHhccCChhhhcccccCcccCCHHHHHHHHh
Q 042009 128 WELLAQALMSLVTERLIEEEKLDSFNAPYYAPCPEELKMAIQ 169 (262)
Q Consensus 128 ~~~l~~al~dmv~eGli~~e~~dsfn~P~y~ps~~Ev~~~ie 169 (262)
-+.+..+|.+|+.+|++..=+-..--.-+|.+|++|--..|-
T Consensus 68 ~~~i~~Il~~l~k~g~~e~~Dk~rt~f~I~Wrs~dewgnmIy 109 (174)
T KOG4068|consen 68 QEFIDEILEELEKKGLAEPTDKRRTRFFIYWRSLDEWGNMIY 109 (174)
T ss_pred HHHHHHHHHHHHHccCCcccccCceEEEEEEcCHHHHHHHHH
Confidence 467899999999999987655556677899999999887665
No 139
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=22.10 E-value=71 Score=27.90 Aligned_cols=31 Identities=23% Similarity=0.356 Sum_probs=20.0
Q ss_pred ceeecCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhccCceEEEEecc
Q 042009 67 KIYISKSSPQCVLDAYSLQFQNNFLIFLKSRAAEMVAGGRMVLSLMG 113 (262)
Q Consensus 67 ~i~~~~~s~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl~~~g 113 (262)
.|+++.+ .+++-.+|.+| |++||+||+-+.-
T Consensus 144 ~I~v~~a-~~~ip~~l~~q---------------L~~gGrLV~pi~~ 174 (209)
T PF01135_consen 144 RIIVTAA-VPEIPEALLEQ---------------LKPGGRLVAPIGQ 174 (209)
T ss_dssp EEEESSB-BSS--HHHHHT---------------EEEEEEEEEEESS
T ss_pred EEEEeec-cchHHHHHHHh---------------cCCCcEEEEEEcc
Confidence 5666554 33455666444 8999999998764
No 140
>PF00619 CARD: Caspase recruitment domain; InterPro: IPR001315 The caspase recruitment domain domain (CARD) is a homotypic protein interaction module composed of a bundle of six alpha-helices. CARD is related in sequence and structure to the death domain (DD, see IPR000488 from INTERPRO) and the death effector domain (DED, see IPR001875 from INTERPRO), which work in similar pathways and show similar interaction properties []. The CARD domain typically associates with other CARD-containing proteins, forming either dimers or trimers. CARD domains can be found in isolation, or in combination with other domains. Domains associated with CARD include: NACHT (IPR007111 from INTERPRO) (in Nal1 and Bir1), NB-ARC (IPR002182 from INTERPRO) (in Apaf-1), pyrin/dapin domains (IPR004020 from INTERPRO) (in Nal1), leucine-rich repeats () (in Nal1), WD repeats (IPR001680 from INTERPRO) (in Apaf1), Src homology domains (IPR001452 from INTERPRO), PDZ (IPR001478 from INTERPRO), RING, kinase and DD domains []. CARD-containing proteins are involved in apoptosis through their regulation of caspases that contain CARDs in their N-terminal pro-domains, including human caspases 1, 2, 9, 11 and 12 []. CARD-containing proteins are also involved in inflammation through their regulation of NF-kappaB []. The mechanisms by which CARDs activate caspases and NF-kappaB involve the assembly of multi-protein complexes, which can facilitate dimerisation or serve as scaffolds on which proteases and kinases are assembled and activated.; GO: 0005515 protein binding, 0042981 regulation of apoptosis, 0005622 intracellular; PDB: 2NSN_A 2NZ7_B 2DBD_A 4E9M_C 2B1W_A 3YGS_P 2KN6_A 3CRD_A 1DGN_A 3KAT_A ....
Probab=22.06 E-value=1.1e+02 Score=22.01 Aligned_cols=25 Identities=20% Similarity=0.341 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHhccCChhhhccccc
Q 042009 130 LLAQALMSLVTERLIEEEKLDSFNA 154 (262)
Q Consensus 130 ~l~~al~dmv~eGli~~e~~dsfn~ 154 (262)
.+...+..|+++|+|++++.+.+.-
T Consensus 17 ~~~~ild~L~~~~vlt~~e~e~I~~ 41 (85)
T PF00619_consen 17 DLDDILDHLLSRGVLTEEEYEEIRS 41 (85)
T ss_dssp HHHHHHHHHHHTTSSSHHHHHHHHT
T ss_pred cHHHHHHHHHHCCCCCHHHHHHHHc
Confidence 4678899999999999999888866
No 141
>PF00586 AIRS: AIR synthase related protein, N-terminal domain; InterPro: IPR000728 This family includes Hydrogen expression/formation protein, HypE, which may be involved in the maturation of NifE hydrogenase; AIR synthase and FGAM synthase, which are involved in de novo purine biosynthesis; and selenide, water dikinase, an enzyme which synthesizes selenophosphate from selenide and ATP.; GO: 0003824 catalytic activity; PDB: 3VIU_A 2Z1T_A 2Z1U_A 3C9U_B 3C9S_A 3C9R_A 1VQV_A 3C9T_B 3M84_A 3QTY_A ....
Probab=21.59 E-value=99 Score=22.89 Aligned_cols=66 Identities=29% Similarity=0.309 Sum_probs=45.0
Q ss_pred cCceEEEEecccCCCCC--CCchhhHHHHHHHHHHHHHHHhccCChhhhcccccCcccCCHHHHHHHHh
Q 042009 103 AGGRMVLSLMGRRSIDP--TTEESCYQWELLAQALMSLVTERLIEEEKLDSFNAPYYAPCPEELKMAIQ 169 (262)
Q Consensus 103 ~GG~mvl~~~g~~~~~~--~~~~~~~~~~~l~~al~dmv~eGli~~e~~dsfn~P~y~ps~~Ev~~~ie 169 (262)
+|++++++.-+-..... .......-|..+..+++|++..|--+.--++++++|-.. ++++++++++
T Consensus 11 ~~~~~~~~~d~~~~~~~~~~~~p~~~g~~av~~~~sDl~a~Ga~P~~~~~~l~~~~~~-~~~~l~~~~~ 78 (96)
T PF00586_consen 11 DGKRLVVSTDGFGTSVHFAFMDPYDGGWKAVAEALSDLAAMGAKPLAILDSLGLPNPE-SPEELKEIVK 78 (96)
T ss_dssp STEEEEEEEEEEETHHHHHTCTHHHHHHHHHHHHHHHHHTTTEEEEEEEEEEEESTTS-BHHHHHHHHH
T ss_pred CCCeEEEEEEeccCcccccccCHHHHHHHHHHHHHHHHHhcCCeeeEEEEEEEcCCCC-CHHHHHHHHH
Confidence 56778777765432210 001122347899999999999999888888888886554 5677777775
No 142
>cd08325 CARD_CASP1-like Caspase activation and recruitment domain found in Caspase-1 and related proteins. Caspase activation and recruitment domain (CARD) similar to those found in Caspase-1 (CASP1, ICE) and related proteins, including CARD-only proteins such as ICEBERG or CARD18, INCA (CARD17), CARD16 (COP1, PSEUDO-ICE), CARD8 (DACAR, NDPP1, TUCAN), and CARD12 (NLRC4), as well as ICE-like caspases such as CASP12, CASP5 (ICH-3) and CASP4 (TX, ICH-2). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. CASP1 plays a central role in the cellular response to a wide variety of microbial and non-microbial stimuli, being activated by the inflammasome or the pyroptosome. CARD8 binds itself and the initiator caspase-9, interfering with the binding of APAF-1 and suppressing caspase-9 activation. CARD12 is a Nod-like receptor (NLR) that plays an important role in the innate immune response to Gram-negative bacteria. Caspase-4 (CASP4), -5 (CASP5),
Probab=21.48 E-value=74 Score=23.61 Aligned_cols=26 Identities=15% Similarity=0.358 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHhccCChhhhcccc
Q 042009 128 WELLAQALMSLVTERLIEEEKLDSFN 153 (262)
Q Consensus 128 ~~~l~~al~dmv~eGli~~e~~dsfn 153 (262)
-+.+...|.+|.+.|++++++.+.+.
T Consensus 15 ~~~i~~llD~Ll~~~Vl~~~E~e~i~ 40 (83)
T cd08325 15 KGVINGLLDDLLEKNVLNEEEMEKIK 40 (83)
T ss_pred HhhHHHHHHHHHHcCCCCHHHHHHHH
Confidence 35688899999999999999877653
No 143
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=21.08 E-value=54 Score=26.25 Aligned_cols=26 Identities=15% Similarity=0.074 Sum_probs=18.7
Q ss_pred cCCCCccceEE-------cc-cccccccCCCccc
Q 042009 29 LFPDKSLHFVH-------SS-SSLHWLSQVPPAL 54 (262)
Q Consensus 29 lfP~~Svh~~~-------Ss-~alHWLS~~P~~~ 54 (262)
+.|.++|-+.+ |+ +.++|+.|.|..+
T Consensus 10 v~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~l 43 (115)
T cd05721 10 ASSNGAASLVCEYTYNGFSKEFRASLLKGADSAV 43 (115)
T ss_pred EcCCCCEEEEEEecCCccccEEEEEEEEeCCCCc
Confidence 45666665544 55 8999999999853
No 144
>PF13794 MiaE_2: tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE)-like; PDB: 3EZ0_C.
Probab=20.73 E-value=83 Score=27.31 Aligned_cols=28 Identities=14% Similarity=0.209 Sum_probs=24.7
Q ss_pred hhhhhhHHHHHhhHHHHHHHHHHHHHHH
Q 042009 212 RAVVESMFELHFGKAMMDLLFARYAEMV 239 (262)
Q Consensus 212 RA~~ep~l~~hfge~I~delF~r~~~~v 239 (262)
+.|.|.+++++.|+.|.+.||.+.+..+
T Consensus 87 ~dW~E~LvKaYVg~gla~DFy~~va~~L 114 (185)
T PF13794_consen 87 SDWLESLVKAYVGDGLAADFYREVASGL 114 (185)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHCCCS
T ss_pred CChHHHHHHHHHHHhHHHHHHHHHHhcC
Confidence 6789999999999999999999877643
No 145
>PF15579 Imm32: Immunity protein 32
Probab=20.69 E-value=4.1e+02 Score=20.81 Aligned_cols=36 Identities=22% Similarity=0.603 Sum_probs=25.2
Q ss_pred CCCceEEeeccCcc--ccccCCCCccceEEcccccccccCCCcccc
Q 042009 12 GFGRCYISGVAGSF--YDRLFPDKSLHFVHSSSSLHWLSQVPPALE 55 (262)
Q Consensus 12 ~~~~~f~~~vpgSF--Y~rlfP~~Svh~~~Ss~alHWLS~~P~~~~ 55 (262)
.+.+.|+.+-|..+ -.|+||+.. .+-|+-.+|..+.
T Consensus 10 ~~~p~~~~v~~~~Y~~~~~vF~dr~--------~vGWMlYlp~~i~ 47 (102)
T PF15579_consen 10 AWEPPYISVAPNGYYFEKQVFPDRP--------GVGWMLYLPRVIT 47 (102)
T ss_pred hcCCCEEEEecchhccccccCCCCC--------ceEEEEecccccc
Confidence 35567888877776 389998874 5667777776543
Done!