BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042011
(361 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 81.3 bits (199), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 88/304 (28%), Positives = 132/304 (43%), Gaps = 46/304 (15%)
Query: 2 TSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFYADN 61
++L+ LD+S N+L+G S + + T ++ L +S+N F PI PL L+
Sbjct: 220 SALQHLDISGNKLSGDFSRA-ISTCTELKLLNISSNQFVGPIPPLPL---KSLQYLSLAE 275
Query: 62 NELNAEITQSHSLIAPNF------QLNSLSLSSDYGDGFIFPKF---------------- 99
N+ EI P+F L L LS ++ G + P F
Sbjct: 276 NKFTGEI--------PDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNF 327
Query: 100 --------LYHQHDLALVDLSHIKMNGEFPTWLLENNTKLETLFLVNDSLTGPF--RLPI 149
L L ++DLS + +GE P L + L TL L +++ +GP L
Sbjct: 328 SGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQ 387
Query: 150 HSHRWLEFLDISNNNFRCHIPVEIGDILPSLKFFNISMNALDGSIPSSFGNMNFLRVLDL 209
+ L+ L + NN F IP + + L ++S N L G+IPSS G+++ LR L L
Sbjct: 388 NPKNTLQELYLQNNGFTGKIPPTLSNC-SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKL 446
Query: 210 SNNQLTGEIPEHLAVGCVXXXXXXXXXXXXXGHMFSRNFNLTNLEWLQLGGNRFVGEIPQ 269
N L GEIP+ L G + S N TNL W+ L NR GEIP+
Sbjct: 447 WLNMLEGEIPQELMY-VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPK 505
Query: 270 SLSK 273
+ +
Sbjct: 506 WIGR 509
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 73/224 (32%), Positives = 107/224 (47%), Gaps = 9/224 (4%)
Query: 1 MTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSR--LKIFY 58
M L++LD+S N+ +G + S S+ L LS+N+F PI L L + + L+ Y
Sbjct: 339 MRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPI-LPNLCQNPKNTLQELY 397
Query: 59 ADNNELNAEITQSHSLIAPNFQLNSLSLSSDYGDGFIFPKFLYHQHDLALVDLSHIKMNG 118
NN +I + S + +L SL LS +Y G I P L L + L + G
Sbjct: 398 LQNNGFTGKIPPTLSNCS---ELVSLHLSFNYLSGTI-PSSLGSLSKLRDLKLWLNMLEG 453
Query: 119 EFPTWLLENNTKLETLFLVNDSLTGPFRLPIHSHRWLEFLDISNNNFRCHIPVEIGDILP 178
E P L+ T LETL L + LTG + + L ++ +SNN IP IG L
Sbjct: 454 EIPQELMYVKT-LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR-LE 511
Query: 179 SLKFFNISMNALDGSIPSSFGNMNFLRVLDLSNNQLTGEIPEHL 222
+L +S N+ G+IP+ G+ L LDL+ N G IP +
Sbjct: 512 NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 555
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 55/100 (55%), Gaps = 3/100 (3%)
Query: 121 PTWLLENNTKLETLFLVNDSLTGPFRLPIHSHRWLEFLDISNNNFRCHIPVEIGDILPSL 180
PT+ +NN + L + + L+G I S +L L++ +N+ IP E+GD L L
Sbjct: 623 PTF--DNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGD-LRGL 679
Query: 181 KFFNISMNALDGSIPSSFGNMNFLRVLDLSNNQLTGEIPE 220
++S N LDG IP + + L +DLSNN L+G IPE
Sbjct: 680 NILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 719
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 71/271 (26%), Positives = 110/271 (40%), Gaps = 56/271 (20%)
Query: 1 MTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHF--QIPISLEPLFNHSRLKIFY 58
++ LR L + N L G I L+++ ++E L+L N +IP L N + L
Sbjct: 438 LSKLRDLKLWLNMLEGEIPQE-LMYVKTLETLILDFNDLTGEIPSGLS---NCTNLNWIS 493
Query: 59 ADNNELNAEITQSHSLIAPNFQLNSLSLSSDYGDGFIFPKFLYHQHDLALVDLSHIKMNG 118
NN L EI + I L L LS++ G I P L L +DL+ NG
Sbjct: 494 LSNNRLTGEIPK---WIGRLENLAILKLSNNSFSGNI-PAELGDCRSLIWLDLNTNLFNG 549
Query: 119 EFPTWLLENNTKLET--------LFLVNDSLT---------------------------- 142
P + + + K+ +++ ND +
Sbjct: 550 TIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNP 609
Query: 143 --------GPFRLPIHSHRW-LEFLDISNNNFRCHIPVEIGDILPSLKFFNISMNALDGS 193
G P + + FLD+S N +IP EIG +P L N+ N + GS
Sbjct: 610 CNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGS-MPYLFILNLGHNDISGS 668
Query: 194 IPSSFGNMNFLRVLDLSNNQLTGEIPEHLAV 224
IP G++ L +LDLS+N+L G IP+ ++
Sbjct: 669 IPDEVGDLRGLNILDLSSNKLDGRIPQAMSA 699
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 70/274 (25%), Positives = 123/274 (44%), Gaps = 38/274 (13%)
Query: 2 TSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHS--RLKIFYA 59
+ L+ L+VSSN L S + L S+E L LS N + + + LK
Sbjct: 123 SGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAI 182
Query: 60 DNNELNAEITQSHSLIAPNFQLNSLSLSSDYGDGFIFPKFLYHQHDLALVDLSHIKMNGE 119
N+++ ++ S + N + +S S+++ G FL L +D+S K++G+
Sbjct: 183 SGNKISGDVDVSRCV---NLEFLDVS-SNNFSTGI---PFLGDCSALQHLDISGNKLSGD 235
Query: 120 FPTWLLENNTKLETLFLVNDSLTGPFR-LPIHSHRWLEFLDISNNNFRCHIPVEIGDILP 178
F + + T+L+ L + ++ GP LP+ S L++L ++ N F IP +
Sbjct: 236 F-SRAISTCTELKLLNISSNQFVGPIPPLPLKS---LQYLSLAENKFTGEIPDFLSGACD 291
Query: 179 SLKFFNISMNALDGSIPSSFGNMNFLRVLDLSNNQLTGEIPEHLAVGCVXXXXXXXXXXX 238
+L ++S N G++P FG+ + L L LS+N +GE+P +
Sbjct: 292 TLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLL-------------- 337
Query: 239 XXGHMFSRNFNLTNLEWLQLGGNRFVGEIPQSLS 272
+ L+ L L N F GE+P+SL+
Sbjct: 338 ----------KMRGLKVLDLSFNEFSGELPESLT 361
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 49/120 (40%), Gaps = 24/120 (20%)
Query: 179 SLKFFNISMNALDGSIPSSFG-NMNFLRVLDLSNNQLTGE--IPEHLAVGCVXXXXXXXX 235
LKF N+S N LD S G +N L VLDLS N ++G + L+ GC
Sbjct: 124 GLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAIS 183
Query: 236 XXXXXGHM-FSRNFNL--------------------TNLEWLQLGGNRFVGEIPQSLSKC 274
G + SR NL + L+ L + GN+ G+ +++S C
Sbjct: 184 GNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTC 243
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 88/304 (28%), Positives = 132/304 (43%), Gaps = 46/304 (15%)
Query: 2 TSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFYADN 61
++L+ LD+S N+L+G S + + T ++ L +S+N F PI PL L+
Sbjct: 223 SALQHLDISGNKLSGDFSRA-ISTCTELKLLNISSNQFVGPIPPLPL---KSLQYLSLAE 278
Query: 62 NELNAEITQSHSLIAPNF------QLNSLSLSSDYGDGFIFPKF---------------- 99
N+ EI P+F L L LS ++ G + P F
Sbjct: 279 NKFTGEI--------PDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNF 330
Query: 100 --------LYHQHDLALVDLSHIKMNGEFPTWLLENNTKLETLFLVNDSLTGPF--RLPI 149
L L ++DLS + +GE P L + L TL L +++ +GP L
Sbjct: 331 SGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQ 390
Query: 150 HSHRWLEFLDISNNNFRCHIPVEIGDILPSLKFFNISMNALDGSIPSSFGNMNFLRVLDL 209
+ L+ L + NN F IP + + L ++S N L G+IPSS G+++ LR L L
Sbjct: 391 NPKNTLQELYLQNNGFTGKIPPTLSNC-SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKL 449
Query: 210 SNNQLTGEIPEHLAVGCVXXXXXXXXXXXXXGHMFSRNFNLTNLEWLQLGGNRFVGEIPQ 269
N L GEIP+ L G + S N TNL W+ L NR GEIP+
Sbjct: 450 WLNMLEGEIPQELMY-VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPK 508
Query: 270 SLSK 273
+ +
Sbjct: 509 WIGR 512
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 73/224 (32%), Positives = 107/224 (47%), Gaps = 9/224 (4%)
Query: 1 MTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSR--LKIFY 58
M L++LD+S N+ +G + S S+ L LS+N+F PI L L + + L+ Y
Sbjct: 342 MRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPI-LPNLCQNPKNTLQELY 400
Query: 59 ADNNELNAEITQSHSLIAPNFQLNSLSLSSDYGDGFIFPKFLYHQHDLALVDLSHIKMNG 118
NN +I + S + +L SL LS +Y G I P L L + L + G
Sbjct: 401 LQNNGFTGKIPPTLSNCS---ELVSLHLSFNYLSGTI-PSSLGSLSKLRDLKLWLNMLEG 456
Query: 119 EFPTWLLENNTKLETLFLVNDSLTGPFRLPIHSHRWLEFLDISNNNFRCHIPVEIGDILP 178
E P L+ T LETL L + LTG + + L ++ +SNN IP IG L
Sbjct: 457 EIPQELMYVKT-LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR-LE 514
Query: 179 SLKFFNISMNALDGSIPSSFGNMNFLRVLDLSNNQLTGEIPEHL 222
+L +S N+ G+IP+ G+ L LDL+ N G IP +
Sbjct: 515 NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 558
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 55/100 (55%), Gaps = 3/100 (3%)
Query: 121 PTWLLENNTKLETLFLVNDSLTGPFRLPIHSHRWLEFLDISNNNFRCHIPVEIGDILPSL 180
PT+ +NN + L + + L+G I S +L L++ +N+ IP E+GD L L
Sbjct: 626 PTF--DNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGD-LRGL 682
Query: 181 KFFNISMNALDGSIPSSFGNMNFLRVLDLSNNQLTGEIPE 220
++S N LDG IP + + L +DLSNN L+G IPE
Sbjct: 683 NILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 71/271 (26%), Positives = 110/271 (40%), Gaps = 56/271 (20%)
Query: 1 MTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHF--QIPISLEPLFNHSRLKIFY 58
++ LR L + N L G I L+++ ++E L+L N +IP L N + L
Sbjct: 441 LSKLRDLKLWLNMLEGEIPQE-LMYVKTLETLILDFNDLTGEIPSGLS---NCTNLNWIS 496
Query: 59 ADNNELNAEITQSHSLIAPNFQLNSLSLSSDYGDGFIFPKFLYHQHDLALVDLSHIKMNG 118
NN L EI + I L L LS++ G I P L L +DL+ NG
Sbjct: 497 LSNNRLTGEIPK---WIGRLENLAILKLSNNSFSGNI-PAELGDCRSLIWLDLNTNLFNG 552
Query: 119 EFPTWLLENNTKLET--------LFLVNDSLT---------------------------- 142
P + + + K+ +++ ND +
Sbjct: 553 TIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNP 612
Query: 143 --------GPFRLPIHSHRW-LEFLDISNNNFRCHIPVEIGDILPSLKFFNISMNALDGS 193
G P + + FLD+S N +IP EIG +P L N+ N + GS
Sbjct: 613 CNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGS-MPYLFILNLGHNDISGS 671
Query: 194 IPSSFGNMNFLRVLDLSNNQLTGEIPEHLAV 224
IP G++ L +LDLS+N+L G IP+ ++
Sbjct: 672 IPDEVGDLRGLNILDLSSNKLDGRIPQAMSA 702
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 70/274 (25%), Positives = 123/274 (44%), Gaps = 38/274 (13%)
Query: 2 TSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHS--RLKIFYA 59
+ L+ L+VSSN L S + L S+E L LS N + + + LK
Sbjct: 126 SGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAI 185
Query: 60 DNNELNAEITQSHSLIAPNFQLNSLSLSSDYGDGFIFPKFLYHQHDLALVDLSHIKMNGE 119
N+++ ++ S + N + +S S+++ G FL L +D+S K++G+
Sbjct: 186 SGNKISGDVDVSRCV---NLEFLDVS-SNNFSTGI---PFLGDCSALQHLDISGNKLSGD 238
Query: 120 FPTWLLENNTKLETLFLVNDSLTGPFR-LPIHSHRWLEFLDISNNNFRCHIPVEIGDILP 178
F + + T+L+ L + ++ GP LP+ S L++L ++ N F IP +
Sbjct: 239 F-SRAISTCTELKLLNISSNQFVGPIPPLPLKS---LQYLSLAENKFTGEIPDFLSGACD 294
Query: 179 SLKFFNISMNALDGSIPSSFGNMNFLRVLDLSNNQLTGEIPEHLAVGCVXXXXXXXXXXX 238
+L ++S N G++P FG+ + L L LS+N +GE+P +
Sbjct: 295 TLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLL-------------- 340
Query: 239 XXGHMFSRNFNLTNLEWLQLGGNRFVGEIPQSLS 272
+ L+ L L N F GE+P+SL+
Sbjct: 341 ----------KMRGLKVLDLSFNEFSGELPESLT 364
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 49/119 (41%), Gaps = 24/119 (20%)
Query: 180 LKFFNISMNALDGSIPSSFG-NMNFLRVLDLSNNQLTGE--IPEHLAVGCVXXXXXXXXX 236
LKF N+S N LD S G +N L VLDLS N ++G + L+ GC
Sbjct: 128 LKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISG 187
Query: 237 XXXXGHM-FSRNFNL--------------------TNLEWLQLGGNRFVGEIPQSLSKC 274
G + SR NL + L+ L + GN+ G+ +++S C
Sbjct: 188 NKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTC 246
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 64/163 (39%), Gaps = 4/163 (2%)
Query: 111 LSHIKMNGEFPTWLLENNTKLETLFLVNDSLTGPFRLPIHSHRWLEFLDISNNNFRCHIP 170
++H ++G P +L + T L TL ++L+G I S L + N IP
Sbjct: 108 ITHTNVSGAIPDFLSQIKT-LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166
Query: 171 VEIGDILPSLKFFNISMNALDGSIPSSFGNMNFLRVLDLSNNQLTGEIPEHLAVGCVXXX 230
G IS N L G IP +F N+N L +DLS N L G+ + G
Sbjct: 167 DSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGD--ASVLFGSDKNT 223
Query: 231 XXXXXXXXXXGHMFSRNFNLTNLEWLQLGGNRFVGEIPQSLSK 273
+ NL L L NR G +PQ L++
Sbjct: 224 QKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQ 266
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 64/158 (40%), Gaps = 35/158 (22%)
Query: 122 TWL-LENNTKLETLFLVNDSLTG-----PFRLP--IHSHRWLEFLDISN-NNFRCHIPVE 172
TWL + +T +T + N L+G P+ +P + + +L FL I NN IP
Sbjct: 37 TWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA 96
Query: 173 IGDILPSLKFFNISMNALDGSIPSSFGNMNFLRVLDLSNNQLTGEIPEHLAVGCVXXXXX 232
I L L + I+ + G+IP + L LD S N L+G +P ++
Sbjct: 97 IAK-LTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS--------- 146
Query: 233 XXXXXXXXGHMFSRNFNLTNLEWLQLGGNRFVGEIPQS 270
+L NL + GNR G IP S
Sbjct: 147 ----------------SLPNLVGITFDGNRISGAIPDS 168
Score = 35.8 bits (81), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 55/114 (48%), Gaps = 3/114 (2%)
Query: 109 VDLSHIKMNGEFP-TWLLENNTKLETLFLVN-DSLTGPFRLPIHSHRWLEFLDISNNNFR 166
+DLS + + +P L N L L++ ++L GP I L +L I++ N
Sbjct: 55 LDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVS 114
Query: 167 CHIPVEIGDILPSLKFFNISMNALDGSIPSSFGNMNFLRVLDLSNNQLTGEIPE 220
IP + I +L + S NAL G++P S ++ L + N+++G IP+
Sbjct: 115 GAIPDFLSQI-KTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPD 167
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 33/64 (51%), Gaps = 11/64 (17%)
Query: 155 LEFLDISNNNF---RCHIPVEIGDILPSLKFFNISMNALDG-SIPSSFGNMNFLRVLDLS 210
LE+LD+S+N CH V +LK ++S NA D I FGNM+ L+ L LS
Sbjct: 71 LEYLDLSHNKLVKISCHPTV-------NLKHLDLSFNAFDALPICKEFGNMSQLKFLGLS 123
Query: 211 NNQL 214
L
Sbjct: 124 TTHL 127
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 38/64 (59%), Gaps = 6/64 (9%)
Query: 1 MTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFYAD 60
+++L++L + NQ+T + SPL LT+++ L + NN L PL N S+L AD
Sbjct: 134 LSNLQVLYLDLNQIT---NISPLAGLTNLQYLSIGNNQVN---DLTPLANLSKLTTLRAD 187
Query: 61 NNEL 64
+N++
Sbjct: 188 DNKI 191
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 49/108 (45%), Gaps = 12/108 (11%)
Query: 1 MTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFYAD 60
+T L L + NQ++ + PL LT ++ L LS NH +L L N L++F +
Sbjct: 152 LTKLDTLSLEDNQISDIV---PLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQE 208
Query: 61 NNELNAEITQSHSLIAPNFQLN------SLSLSSDYGDGFIFPKFLYH 102
LN I +L+ PN N + + SD GD + P +H
Sbjct: 209 C--LNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGD-YEKPNVKWH 253
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 48/108 (44%), Gaps = 12/108 (11%)
Query: 1 MTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFYAD 60
+T L L + NQ+ + PL LT ++ L LS NH +L L N L++F +
Sbjct: 153 LTKLDTLSLEDNQIRRIV---PLARLTKLQNLYLSKNHISDLRALRGLKNLDVLELFSQE 209
Query: 61 NNELNAEITQSHSLIAPNFQLN------SLSLSSDYGDGFIFPKFLYH 102
LN I +L+ PN N + + SD GD + P +H
Sbjct: 210 --ALNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGD-YEKPNVKWH 254
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 49/108 (45%), Gaps = 12/108 (11%)
Query: 1 MTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFYAD 60
+T L L + NQ++ + PL LT ++ L LS NH +L L N L++F +
Sbjct: 155 LTKLDTLSLEDNQISDIV---PLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQE 211
Query: 61 NNELNAEITQSHSLIAPNFQLN------SLSLSSDYGDGFIFPKFLYH 102
LN I +L+ PN N + + SD GD + P +H
Sbjct: 212 C--LNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGD-YEKPNVKWH 256
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 49/108 (45%), Gaps = 12/108 (11%)
Query: 1 MTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFYAD 60
+T L L + NQ++ + PL LT ++ L LS NH +L L N L++F +
Sbjct: 155 LTKLDTLSLEDNQISDIV---PLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQE 211
Query: 61 NNELNAEITQSHSLIAPNFQLN------SLSLSSDYGDGFIFPKFLYH 102
LN I +L+ PN N + + SD GD + P +H
Sbjct: 212 C--LNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGD-YEKPNVKWH 256
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 49/108 (45%), Gaps = 12/108 (11%)
Query: 1 MTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFYAD 60
+T L L + NQ++ + PL LT ++ L LS NH +L L N L++F +
Sbjct: 153 LTKLDTLSLEDNQISDIV---PLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQE 209
Query: 61 NNELNAEITQSHSLIAPNFQLN------SLSLSSDYGDGFIFPKFLYH 102
LN I +L+ PN N + + SD GD + P +H
Sbjct: 210 C--LNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGD-YEKPNVKWH 254
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 32.3 bits (72), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 49/108 (45%), Gaps = 12/108 (11%)
Query: 1 MTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFYAD 60
+T L L + NQ++ + PL LT ++ L LS NH +L L N L++F +
Sbjct: 175 LTKLDTLSLEDNQISDIV---PLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQE 231
Query: 61 NNELNAEITQSHSLIAPNFQLN------SLSLSSDYGDGFIFPKFLYH 102
LN I +L+ PN N + + SD GD + P +H
Sbjct: 232 C--LNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGD-YEKPNVKWH 276
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 32.0 bits (71), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 11/86 (12%)
Query: 131 LETLFLVNDSLTGPFRLPIHSHRWLEFLDISNNNFRCHIPVEIGDILPSLKFFNISMNAL 190
LE+L +SLT LP + L+ L + NNN + + D+ P L++ +S N L
Sbjct: 93 LESLVASCNSLTELPELP----QSLKSLLVDNNNLKA-----LSDLPPLLEYLGVSNNQL 143
Query: 191 DGSIPSSFGNMNFLRVLDLSNNQLTG 216
+ +P N +FL+++D+ NN L
Sbjct: 144 EK-LPE-LQNSSFLKIIDVDNNSLKK 167
>pdb|2WQW|A Chain A, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQW|B Chain B, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
Length = 286
Score = 32.0 bits (71), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 49/108 (45%), Gaps = 12/108 (11%)
Query: 1 MTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFYAD 60
+T L L + NQ++ + PL LT ++ L LS NH +L L N L++F +
Sbjct: 150 LTKLDTLSLEDNQISDIV---PLACLTKLQNLYLSKNHISDLRALCGLKNLDVLELFSQE 206
Query: 61 NNELNAEITQSHSLIAPNFQLN------SLSLSSDYGDGFIFPKFLYH 102
LN I +L+ PN N + + SD GD + P +H
Sbjct: 207 --ALNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGD-YEKPNVKWH 251
>pdb|3DKT|A Chain A, Crystal Structure Of Thermotoga Maritima Encapsulin
pdb|3DKT|B Chain B, Crystal Structure Of Thermotoga Maritima Encapsulin
pdb|3DKT|C Chain C, Crystal Structure Of Thermotoga Maritima Encapsulin
pdb|3DKT|D Chain D, Crystal Structure Of Thermotoga Maritima Encapsulin
pdb|3DKT|E Chain E, Crystal Structure Of Thermotoga Maritima Encapsulin
pdb|3DKT|F Chain F, Crystal Structure Of Thermotoga Maritima Encapsulin
pdb|3DKT|G Chain G, Crystal Structure Of Thermotoga Maritima Encapsulin
pdb|3DKT|H Chain H, Crystal Structure Of Thermotoga Maritima Encapsulin
pdb|3DKT|I Chain I, Crystal Structure Of Thermotoga Maritima Encapsulin
pdb|3DKT|J Chain J, Crystal Structure Of Thermotoga Maritima Encapsulin
Length = 265
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 45/101 (44%), Gaps = 7/101 (6%)
Query: 77 PNFQLNSLSLS----SDYGDGFIFPKFLYHQHDLALVDLSHIKMN-GEFPTWLLENNTKL 131
PN L+SL + +++ D IF + L+ K+ G P LLE +
Sbjct: 97 PNVDLSSLEETVRKVAEFEDEVIF-RGCEKSGVKGLLSFEERKIECGSTPKDLLEAIVRA 155
Query: 132 ETLFLVNDSLTGPFRLPIHSHRWLEFLDISNNNFRCHIPVE 172
++F D + GP+ L I++ RW+ FL ++ VE
Sbjct: 156 LSIF-SKDGIEGPYTLVINTDRWINFLKEEAGHYPLEKRVE 195
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 50/103 (48%), Gaps = 13/103 (12%)
Query: 124 LLENNTKLETLFLVNDSLT---------GP-FRLPIHSHRWLEFLDISNNNFRCHIPVEI 173
+LE KLE L L +++L GP + L SH L L++ +N F IPVE+
Sbjct: 504 MLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSH--LHILNLESNGFD-EIPVEV 560
Query: 174 GDILPSLKFFNISMNALDGSIPSSFGNMNFLRVLDLSNNQLTG 216
L LK ++ +N L+ S F N L+ L+L N +T
Sbjct: 561 FKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITS 603
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 50/103 (48%), Gaps = 13/103 (12%)
Query: 124 LLENNTKLETLFLVNDSLT---------GP-FRLPIHSHRWLEFLDISNNNFRCHIPVEI 173
+LE KLE L L +++L GP + L SH L L++ +N F IPVE+
Sbjct: 509 MLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSH--LHILNLESNGFD-EIPVEV 565
Query: 174 GDILPSLKFFNISMNALDGSIPSSFGNMNFLRVLDLSNNQLTG 216
L LK ++ +N L+ S F N L+ L+L N +T
Sbjct: 566 FKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITS 608
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 50/103 (48%), Gaps = 13/103 (12%)
Query: 124 LLENNTKLETLFLVNDSLT---------GP-FRLPIHSHRWLEFLDISNNNFRCHIPVEI 173
+LE KLE L L +++L GP + L SH L L++ +N F IPVE+
Sbjct: 499 MLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSH--LHILNLESNGFD-EIPVEV 555
Query: 174 GDILPSLKFFNISMNALDGSIPSSFGNMNFLRVLDLSNNQLTG 216
L LK ++ +N L+ S F N L+ L+L N +T
Sbjct: 556 FKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITS 598
>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|C Chain C, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
Length = 567
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 32/67 (47%)
Query: 1 MTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFYAD 60
+ +LR L+V + + +L ++EL+L NN Q +++PL + RL +
Sbjct: 482 LAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQ 541
Query: 61 NNELNAE 67
N L E
Sbjct: 542 GNSLCQE 548
>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 567
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 32/67 (47%)
Query: 1 MTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFYAD 60
+ +LR L+V + + +L ++EL+L NN Q +++PL + RL +
Sbjct: 482 LAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQ 541
Query: 61 NNELNAE 67
N L E
Sbjct: 542 GNSLCQE 548
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 15/61 (24%)
Query: 177 LPSLKFFNISMNA----------LDG----SIPSSFGNMNFLRVLDLSNNQLTGEIPEHL 222
L +L+ FNIS N L+G +P+ N++ LRVLDLS+N+LT +P L
Sbjct: 231 LSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTS-LPAEL 289
Query: 223 A 223
Sbjct: 290 G 290
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 17/21 (80%)
Query: 195 PSSFGNMNFLRVLDLSNNQLT 215
P +F +N+LRVL++S NQLT
Sbjct: 289 PYAFRGLNYLRVLNVSGNQLT 309
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Query: 155 LEFLDISNNNFRCHIPVEIGDILPSLKFFNISMNALDGSIPSSFGNMNFLRVLDLSNNQL 214
L +L + N + +P + D L SLK + N L +F + L+ L L NNQL
Sbjct: 135 LTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQL 193
Query: 215 TGEIPE 220
+PE
Sbjct: 194 K-RVPE 198
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,064,633
Number of Sequences: 62578
Number of extensions: 333803
Number of successful extensions: 967
Number of sequences better than 100.0: 49
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 750
Number of HSP's gapped (non-prelim): 137
length of query: 361
length of database: 14,973,337
effective HSP length: 100
effective length of query: 261
effective length of database: 8,715,537
effective search space: 2274755157
effective search space used: 2274755157
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)