Query 042011
Match_columns 361
No_of_seqs 312 out of 3156
Neff 10.3
Searched_HMMs 46136
Date Fri Mar 29 13:04:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042011.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042011hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 2.9E-37 6.2E-42 315.7 22.8 304 2-314 140-443 (968)
2 PLN00113 leucine-rich repeat r 100.0 9.7E-37 2.1E-41 311.8 22.9 307 1-316 163-469 (968)
3 KOG4194 Membrane glycoprotein 100.0 7.6E-38 1.6E-42 280.0 3.4 330 1-348 101-459 (873)
4 KOG4194 Membrane glycoprotein 100.0 4E-38 8.6E-43 281.8 0.6 312 3-324 150-464 (873)
5 KOG0444 Cytoskeletal regulator 100.0 9.3E-31 2E-35 236.7 -5.0 300 1-314 31-354 (1255)
6 KOG0444 Cytoskeletal regulator 99.9 4.3E-30 9.3E-35 232.5 -3.2 297 3-315 79-378 (1255)
7 KOG0472 Leucine-rich repeat pr 99.9 9.2E-30 2E-34 219.1 -6.5 290 4-312 116-541 (565)
8 KOG0472 Leucine-rich repeat pr 99.9 3.7E-28 8E-33 209.3 -4.3 126 177-307 434-559 (565)
9 KOG4237 Extracellular matrix p 99.9 1.4E-27 3E-32 205.3 -4.2 294 28-326 68-373 (498)
10 KOG0618 Serine/threonine phosp 99.9 1.2E-25 2.6E-30 211.7 0.6 291 7-322 183-498 (1081)
11 PRK15387 E3 ubiquitin-protein 99.9 4.5E-23 9.7E-28 199.1 16.4 261 4-317 203-463 (788)
12 KOG4237 Extracellular matrix p 99.9 4.5E-26 9.8E-31 196.0 -5.9 301 33-350 52-368 (498)
13 PLN03210 Resistant to P. syrin 99.9 7.3E-22 1.6E-26 203.5 22.7 286 3-310 590-904 (1153)
14 PRK15387 E3 ubiquitin-protein 99.9 6.8E-22 1.5E-26 190.9 14.5 244 2-295 222-465 (788)
15 PLN03210 Resistant to P. syrin 99.9 6.1E-20 1.3E-24 189.3 23.5 290 1-313 557-884 (1153)
16 PRK15370 E3 ubiquitin-protein 99.9 2.3E-21 5E-26 188.2 11.8 246 3-288 179-428 (754)
17 KOG0618 Serine/threonine phosp 99.8 4.2E-23 9.2E-28 194.7 -1.9 267 2-286 219-487 (1081)
18 cd00116 LRR_RI Leucine-rich re 99.8 1.2E-21 2.7E-26 176.0 4.5 283 6-311 2-319 (319)
19 PRK15370 E3 ubiquitin-protein 99.8 3E-20 6.6E-25 180.5 13.4 247 27-312 178-428 (754)
20 cd00116 LRR_RI Leucine-rich re 99.8 4.6E-21 1E-25 172.3 2.2 258 31-314 2-293 (319)
21 KOG0617 Ras suppressor protein 99.7 2.1E-20 4.5E-25 143.9 -6.1 186 127-320 31-220 (264)
22 KOG0617 Ras suppressor protein 99.7 2.7E-19 6E-24 137.8 -3.1 161 150-317 30-191 (264)
23 KOG0532 Leucine-rich repeat (L 99.5 5.2E-16 1.1E-20 140.2 -5.5 170 107-288 78-247 (722)
24 COG4886 Leucine-rich repeat (L 99.4 8.8E-13 1.9E-17 122.1 7.0 176 103-289 115-291 (394)
25 KOG1259 Nischarin, modulator o 99.3 3.3E-13 7.2E-18 113.4 2.0 132 178-316 284-416 (490)
26 KOG1909 Ran GTPase-activating 99.3 1.5E-13 3.3E-18 117.6 -0.1 173 23-215 26-226 (382)
27 KOG3207 Beta-tubulin folding c 99.3 5.1E-13 1.1E-17 117.5 2.3 209 80-290 122-341 (505)
28 KOG3207 Beta-tubulin folding c 99.3 1.9E-13 4.1E-18 120.2 -0.5 215 100-316 117-343 (505)
29 PF14580 LRR_9: Leucine-rich r 99.3 2.5E-12 5.5E-17 103.1 6.0 125 152-281 18-146 (175)
30 COG4886 Leucine-rich repeat (L 99.3 2.6E-12 5.7E-17 118.9 6.9 177 127-313 114-291 (394)
31 KOG0532 Leucine-rich repeat (L 99.3 1E-13 2.2E-18 125.6 -3.0 193 80-286 76-271 (722)
32 KOG1909 Ran GTPase-activating 99.2 1.1E-12 2.5E-17 112.3 0.4 214 98-312 52-311 (382)
33 PF14580 LRR_9: Leucine-rich r 99.2 5.1E-12 1.1E-16 101.3 4.1 139 9-185 4-147 (175)
34 PLN03150 hypothetical protein; 99.2 4E-11 8.6E-16 116.5 8.6 112 204-316 420-532 (623)
35 KOG1259 Nischarin, modulator o 99.2 7E-12 1.5E-16 105.6 1.9 227 23-266 178-414 (490)
36 PF13855 LRR_8: Leucine rich r 99.2 2E-11 4.3E-16 80.8 2.7 61 2-64 1-61 (61)
37 PLN03150 hypothetical protein; 99.1 3.1E-10 6.7E-15 110.3 9.4 113 179-292 419-532 (623)
38 KOG0531 Protein phosphatase 1, 99.1 7.5E-12 1.6E-16 116.2 -2.0 130 24-166 69-199 (414)
39 PF13855 LRR_8: Leucine rich r 99.0 2.5E-10 5.5E-15 75.4 3.4 59 252-310 2-60 (61)
40 KOG0531 Protein phosphatase 1, 99.0 9.2E-11 2E-15 109.0 0.4 243 2-267 72-321 (414)
41 KOG4658 Apoptotic ATPase [Sign 98.8 3.4E-09 7.4E-14 105.6 5.6 125 5-139 526-652 (889)
42 KOG1859 Leucine-rich repeat pr 98.8 1.4E-10 3.1E-15 108.4 -4.3 130 179-315 165-295 (1096)
43 KOG4658 Apoptotic ATPase [Sign 98.8 7.6E-09 1.6E-13 103.2 5.8 269 2-284 545-828 (889)
44 KOG2120 SCF ubiquitin ligase, 98.8 2.1E-10 4.6E-15 96.6 -4.8 176 130-308 186-372 (419)
45 KOG4579 Leucine-rich repeat (L 98.7 4.7E-10 1E-14 83.8 -3.1 133 179-316 28-163 (177)
46 KOG2120 SCF ubiquitin ligase, 98.7 2.4E-10 5.2E-15 96.3 -6.0 203 28-237 186-397 (419)
47 KOG1859 Leucine-rich repeat pr 98.7 2.8E-09 6.1E-14 100.0 -1.2 210 127-352 82-308 (1096)
48 COG5238 RNA1 Ran GTPase-activa 98.6 4.5E-09 9.7E-14 87.7 -1.3 213 26-241 29-286 (388)
49 KOG2982 Uncharacterized conser 98.6 4.5E-08 9.7E-13 82.8 4.3 206 102-307 69-287 (418)
50 KOG4579 Leucine-rich repeat (L 98.5 5.5E-09 1.2E-13 78.2 -2.4 113 105-222 28-142 (177)
51 COG5238 RNA1 Ran GTPase-activa 98.5 5.9E-08 1.3E-12 81.1 2.1 253 47-313 25-317 (388)
52 KOG2982 Uncharacterized conser 98.4 1.3E-07 2.8E-12 80.1 1.7 64 177-240 198-262 (418)
53 PF12799 LRR_4: Leucine Rich r 98.4 3.7E-07 8E-12 55.3 2.9 37 2-40 1-37 (44)
54 KOG1644 U2-associated snRNP A' 98.3 1.6E-06 3.4E-11 69.6 5.8 125 156-285 22-150 (233)
55 PF12799 LRR_4: Leucine Rich r 98.2 1.8E-06 3.9E-11 52.3 3.7 37 252-289 2-38 (44)
56 PF13306 LRR_5: Leucine rich r 98.1 8.6E-06 1.9E-10 62.6 6.9 37 147-185 29-65 (129)
57 KOG1644 U2-associated snRNP A' 98.1 4.4E-06 9.6E-11 67.1 4.7 124 5-163 22-150 (233)
58 KOG4341 F-box protein containi 98.1 1.8E-07 4E-12 82.7 -3.6 110 200-309 318-436 (483)
59 PRK15386 type III secretion pr 98.0 3.2E-05 6.9E-10 70.1 9.9 136 100-261 48-187 (426)
60 KOG3665 ZYG-1-like serine/thre 98.0 2E-06 4.4E-11 84.0 2.4 151 80-233 123-281 (699)
61 PF13306 LRR_5: Leucine rich r 98.0 1.9E-05 4E-10 60.7 6.6 14 246-259 76-89 (129)
62 KOG4341 F-box protein containi 98.0 9.2E-08 2E-12 84.5 -7.1 303 3-307 139-460 (483)
63 KOG3665 ZYG-1-like serine/thre 97.9 1.1E-05 2.3E-10 79.0 3.6 135 129-266 122-265 (699)
64 PRK15386 type III secretion pr 97.8 0.00014 3E-09 66.1 9.6 134 24-188 49-187 (426)
65 KOG2739 Leucine-rich acidic nu 97.3 7.1E-05 1.5E-09 62.7 1.0 107 2-115 43-154 (260)
66 KOG2123 Uncharacterized conser 97.3 1.2E-05 2.7E-10 67.8 -3.8 81 179-264 20-101 (388)
67 KOG2739 Leucine-rich acidic nu 97.3 0.00011 2.3E-09 61.7 1.5 113 18-138 35-152 (260)
68 KOG2123 Uncharacterized conser 97.3 1.1E-05 2.3E-10 68.1 -4.4 99 3-110 20-123 (388)
69 KOG1947 Leucine rich repeat pr 96.9 9.2E-05 2E-09 70.4 -2.3 62 103-164 242-306 (482)
70 KOG1947 Leucine rich repeat pr 96.6 0.00023 4.9E-09 67.7 -2.5 112 103-214 187-307 (482)
71 PF00560 LRR_1: Leucine Rich R 95.9 0.0022 4.8E-08 32.2 0.1 16 4-20 2-17 (22)
72 smart00370 LRR Leucine-rich re 95.8 0.0095 2.1E-07 31.2 2.3 23 1-24 1-23 (26)
73 smart00369 LRR_TYP Leucine-ric 95.8 0.0095 2.1E-07 31.2 2.3 23 1-24 1-23 (26)
74 PF00560 LRR_1: Leucine Rich R 95.6 0.0061 1.3E-07 30.6 1.1 12 277-288 2-13 (22)
75 PF13504 LRR_7: Leucine rich r 95.4 0.0084 1.8E-07 27.9 1.1 13 3-15 2-14 (17)
76 KOG4308 LRR-containing protein 95.0 0.00013 2.9E-09 68.4 -11.1 182 106-289 89-304 (478)
77 smart00370 LRR Leucine-rich re 94.1 0.041 8.9E-07 28.7 1.8 22 26-48 1-22 (26)
78 smart00369 LRR_TYP Leucine-ric 94.1 0.041 8.9E-07 28.7 1.8 22 26-48 1-22 (26)
79 KOG4308 LRR-containing protein 93.9 0.00056 1.2E-08 64.3 -9.7 39 54-93 89-128 (478)
80 KOG0473 Leucine-rich repeat pr 93.2 0.002 4.2E-08 53.4 -6.4 85 225-312 40-124 (326)
81 KOG3864 Uncharacterized conser 92.1 0.041 8.8E-07 44.8 -0.1 34 179-212 102-135 (221)
82 PF13516 LRR_6: Leucine Rich r 91.6 0.067 1.4E-06 27.3 0.4 18 251-268 2-19 (24)
83 KOG3864 Uncharacterized conser 91.4 0.024 5.3E-07 46.0 -2.1 81 203-284 102-185 (221)
84 TIGR00864 PCC polycystin catio 89.1 0.16 3.4E-06 56.6 0.9 45 281-325 1-45 (2740)
85 smart00365 LRR_SD22 Leucine-ri 88.4 0.37 8.1E-06 25.2 1.6 14 2-15 2-15 (26)
86 KOG0473 Leucine-rich repeat pr 87.9 0.015 3.3E-07 48.3 -5.8 85 100-189 38-122 (326)
87 smart00364 LRR_BAC Leucine-ric 84.3 0.68 1.5E-05 24.1 1.3 17 3-20 3-19 (26)
88 KOG4242 Predicted myosin-I-bin 82.9 9.5 0.00021 35.6 8.7 58 253-310 415-479 (553)
89 KOG3763 mRNA export factor TAP 78.6 1.7 3.7E-05 41.1 2.7 63 200-265 216-284 (585)
90 smart00368 LRR_RI Leucine rich 77.1 1.9 4.1E-05 22.9 1.5 14 252-265 3-16 (28)
91 KOG3763 mRNA export factor TAP 73.2 2.3 5.1E-05 40.2 2.1 67 221-289 212-284 (585)
92 KOG4242 Predicted myosin-I-bin 69.9 26 0.00057 32.9 7.8 59 229-287 415-480 (553)
93 smart00367 LRR_CC Leucine-rich 55.0 8.6 0.00019 19.7 1.3 11 27-37 2-12 (26)
94 TIGR00864 PCC polycystin catio 50.9 11 0.00023 43.1 2.4 32 8-40 1-32 (2740)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.9e-37 Score=315.71 Aligned_cols=304 Identities=29% Similarity=0.389 Sum_probs=170.3
Q ss_pred CCCCeEeCCCccccCcCChhhhhccCCCCeEeCcCCcccccCCcccccCCCCCcEEEccCCCcccccccccccccCcccc
Q 042011 2 TSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLIAPNFQL 81 (361)
Q Consensus 2 ~~L~~L~L~~n~i~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L 81 (361)
++|++|++++|.+++.+|. .+..+++|++|++++|.+.+.+| ..+.++++|++|++++|.+.+..+.. +..+.+|
T Consensus 140 ~~L~~L~Ls~n~~~~~~p~-~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~p~~---l~~l~~L 214 (968)
T PLN00113 140 PNLETLDLSNNMLSGEIPN-DIGSFSSLKVLDLGGNVLVGKIP-NSLTNLTSLEFLTLASNQLVGQIPRE---LGQMKSL 214 (968)
T ss_pred CCCCEEECcCCcccccCCh-HHhcCCCCCEEECccCcccccCC-hhhhhCcCCCeeeccCCCCcCcCChH---HcCcCCc
Confidence 4555556666655555555 56666666666666666655555 35666666666666666665444433 3444566
Q ss_pred cEEeccCCCCCCCCCchhhcCCCCccEEEecCCcccCCcChHHHhcCCCCcEEEecCCcccCCCCCCcCCCCCcCEEEcc
Q 042011 82 NSLSLSSDYGDGFIFPKFLYHQHDLALVDLSHIKMNGEFPTWLLENNTKLETLFLVNDSLTGPFRLPIHSHRWLEFLDIS 161 (361)
Q Consensus 82 ~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 161 (361)
++|++ ++|.+.+..|..+..+++|++|++++|.+++.+|.. ++++++|++|++++|.+.+..|..+..+++|++|+++
T Consensus 215 ~~L~L-~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 292 (968)
T PLN00113 215 KWIYL-GYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSS-LGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLS 292 (968)
T ss_pred cEEEC-cCCccCCcCChhHhcCCCCCEEECcCceeccccChh-HhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECc
Confidence 66666 566665556666666666666666666665555554 5566666666666666655555555566666666666
Q ss_pred CCcCCccCChhhhccCCCccEEEecCCccccccCccccCCCCCCEEeccCCcCccccchhhhhCCCCCcEEEeecCCCCC
Q 042011 162 NNNFRCHIPVEIGDILPSLKFFNISMNALDGSIPSSFGNMNFLRVLDLSNNQLTGEIPEHLAVGCVNLESLALSNNSLEG 241 (361)
Q Consensus 162 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~ 241 (361)
+|.+.+.+|..+.. +++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+.+|..+. .+++|+.|++++|++.+
T Consensus 293 ~n~l~~~~p~~~~~-l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~-~~~~L~~L~Ls~n~l~~ 370 (968)
T PLN00113 293 DNSLSGEIPELVIQ-LQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLG-KHNNLTVLDLSTNNLTG 370 (968)
T ss_pred CCeeccCCChhHcC-CCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHh-CCCCCcEEECCCCeeEe
Confidence 66665455544443 55666666666665555555555566666666666665555555443 45555555555555554
Q ss_pred cccccccCCCCCCEEeccCCcCCccchhhhhcCCCCCEEECcCCcccccCCCCCCCcCcceeeccccccccCC
Q 042011 242 HMFSRNFNLTNLEWLQLGGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGNVNVPSSPANTLFNLSQNSRRFTSS 314 (361)
Q Consensus 242 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~ 314 (361)
..|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|++++..|..+..++.|+.+++++|.+++.
T Consensus 371 ~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 443 (968)
T PLN00113 371 EIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGR 443 (968)
T ss_pred eCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCc
Confidence 4444444444444444444444444444444444555555555555444444444444444444444444443
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=9.7e-37 Score=311.82 Aligned_cols=307 Identities=34% Similarity=0.429 Sum_probs=248.6
Q ss_pred CCCCCeEeCCCccccCcCChhhhhccCCCCeEeCcCCcccccCCcccccCCCCCcEEEccCCCcccccccccccccCccc
Q 042011 1 MTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLIAPNFQ 80 (361)
Q Consensus 1 l~~L~~L~L~~n~i~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~ 80 (361)
+++|++|++++|.+++.+|. .+.++++|++|++++|++++.+| ..+.++++|++|++++|.+.+..+.. +..+.+
T Consensus 163 l~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p~~---l~~l~~ 237 (968)
T PLN00113 163 FSSLKVLDLGGNVLVGKIPN-SLTNLTSLEFLTLASNQLVGQIP-RELGQMKSLKWIYLGYNNLSGEIPYE---IGGLTS 237 (968)
T ss_pred CCCCCEEECccCcccccCCh-hhhhCcCCCeeeccCCCCcCcCC-hHHcCcCCccEEECcCCccCCcCChh---HhcCCC
Confidence 47899999999999878888 89999999999999999987777 67889999999999999988766655 456678
Q ss_pred ccEEeccCCCCCCCCCchhhcCCCCccEEEecCCcccCCcChHHHhcCCCCcEEEecCCcccCCCCCCcCCCCCcCEEEc
Q 042011 81 LNSLSLSSDYGDGFIFPKFLYHQHDLALVDLSHIKMNGEFPTWLLENNTKLETLFLVNDSLTGPFRLPIHSHRWLEFLDI 160 (361)
Q Consensus 81 L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 160 (361)
|++|++ .+|.+.+..|..+..+++|++|++++|.+.+.+|.. +.++++|++|++++|.+.+..|..+..+++|+.|++
T Consensus 238 L~~L~L-~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l 315 (968)
T PLN00113 238 LNHLDL-VYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPS-IFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHL 315 (968)
T ss_pred CCEEEC-cCceeccccChhHhCCCCCCEEECcCCeeeccCchh-HhhccCcCEEECcCCeeccCCChhHcCCCCCcEEEC
Confidence 999999 888888888888999999999999999988777777 678889999999999888888888888888999999
Q ss_pred cCCcCCccCChhhhccCCCccEEEecCCccccccCccccCCCCCCEEeccCCcCccccchhhhhCCCCCcEEEeecCCCC
Q 042011 161 SNNNFRCHIPVEIGDILPSLKFFNISMNALDGSIPSSFGNMNFLRVLDLSNNQLTGEIPEHLAVGCVNLESLALSNNSLE 240 (361)
Q Consensus 161 ~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~ 240 (361)
++|.+.+.+|..+.. +++|+.|++++|.+.+.+|..++.+++|+.|++++|.+.+.+|..+. .+++|+.|++++|.+.
T Consensus 316 ~~n~~~~~~~~~~~~-l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~-~~~~L~~L~l~~n~l~ 393 (968)
T PLN00113 316 FSNNFTGKIPVALTS-LPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLC-SSGNLFKLILFSNSLE 393 (968)
T ss_pred CCCccCCcCChhHhc-CCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHh-CcCCCCEEECcCCEec
Confidence 988888777766665 88888888888888878888888888888888888888777776665 5677777777777777
Q ss_pred CcccccccCCCCCCEEeccCCcCCccchhhhhcCCCCCEEECcCCcccccCCCCCCCcCcceeeccccccccCCcc
Q 042011 241 GHMFSRNFNLTNLEWLQLGGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGNVNVPSSPANTLFNLSQNSRRFTSSIS 316 (361)
Q Consensus 241 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~~ 316 (361)
+..|..+..+++|+.|++++|++++..|..+..+++|+.+++++|.+++.+|..+..+++|+.|++++|++.+.+|
T Consensus 394 ~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p 469 (968)
T PLN00113 394 GEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLP 469 (968)
T ss_pred ccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecC
Confidence 7677777777777777777777777777777777777777777777777666666666666666666666665554
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=7.6e-38 Score=280.03 Aligned_cols=330 Identities=22% Similarity=0.217 Sum_probs=235.0
Q ss_pred CCCCCeEeCCCccccCcCChhhhhc-cCCCCeEeCcCCcccccCCcccccCCCCCcEEEccCCCcccccccccccccCcc
Q 042011 1 MTSLRILDVSSNQLTGSISSSPLVH-LTSIEELMLSNNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLIAPNF 79 (361)
Q Consensus 1 l~~L~~L~L~~n~i~~~i~~~~~~~-l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~ 79 (361)
+++|+++++.+|.++ .||. |.. ..+|+.|+|.+|.|+ ++..+++..++.|+.||||.|.+....... +....
T Consensus 101 l~nLq~v~l~~N~Lt-~IP~--f~~~sghl~~L~L~~N~I~-sv~se~L~~l~alrslDLSrN~is~i~~~s---fp~~~ 173 (873)
T KOG4194|consen 101 LPNLQEVNLNKNELT-RIPR--FGHESGHLEKLDLRHNLIS-SVTSEELSALPALRSLDLSRNLISEIPKPS---FPAKV 173 (873)
T ss_pred CCcceeeeeccchhh-hccc--ccccccceeEEeeeccccc-cccHHHHHhHhhhhhhhhhhchhhcccCCC---CCCCC
Confidence 467777777777777 7776 444 345777777777776 555566777777777777777776543333 33334
Q ss_pred cccEEeccCCCCCCCCCchhhcCCCCccEEEecCCcccCCcChHHHhcCCCCcEEEecCCcccC----------------
Q 042011 80 QLNSLSLSSDYGDGFIFPKFLYHQHDLALVDLSHIKMNGEFPTWLLENNTKLETLFLVNDSLTG---------------- 143 (361)
Q Consensus 80 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~---------------- 143 (361)
++++|+| ++|.++......|..+.+|..|.|++|+++ .+|...|+++++|+.|+|..|++..
T Consensus 174 ni~~L~L-a~N~It~l~~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlk 251 (873)
T KOG4194|consen 174 NIKKLNL-ASNRITTLETGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLK 251 (873)
T ss_pred CceEEee-ccccccccccccccccchheeeecccCccc-ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhh
Confidence 7777777 777777777777777777777777777776 6676667777777777777666543
Q ss_pred --------CCCCCcCCCCCcCEEEccCCcCCccCChhhhccCCCccEEEecCCccccccCccccCCCCCCEEeccCCcCc
Q 042011 144 --------PFRLPIHSHRWLEFLDISNNNFRCHIPVEIGDILPSLKFFNISMNALDGSIPSSFGNMNFLRVLDLSNNQLT 215 (361)
Q Consensus 144 --------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~ 215 (361)
.....|..+.++++|+++.|+++ .+.....-++..|+.|++|+|.|...-++....+++|++|++++|+++
T Consensus 252 lqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~-~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~ 330 (873)
T KOG4194|consen 252 LQRNDISKLDDGAFYGLEKMEHLNLETNRLQ-AVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRIT 330 (873)
T ss_pred hhhcCcccccCcceeeecccceeecccchhh-hhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccc
Confidence 23444555566677777777776 443332223777888888888877666777778888888888888888
Q ss_pred cccchhhhhCCCCCcEEEeecCCCCCcccccccCCCCCCEEeccCCcCCccc---hhhhhcCCCCCEEECcCCcccccCC
Q 042011 216 GEIPEHLAVGCVNLESLALSNNSLEGHMFSRNFNLTNLEWLQLGGNRFVGEI---PQSLSKCSSLEGLYLNNNSLSGNVN 292 (361)
Q Consensus 216 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~---~~~~~~l~~L~~L~l~~N~l~~~~~ 292 (361)
++++..+..+..|++|+|++|+++......|..+++|+.|||++|.++..+ ...|.++++|+.|++.+|++..+.-
T Consensus 331 -~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~k 409 (873)
T KOG4194|consen 331 -RLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPK 409 (873)
T ss_pred -cCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecch
Confidence 787777777888888888888888877788888899999999999877543 3568888999999999999987666
Q ss_pred CCCCCcCcceeeccccccccCCcccccccccccchhhhHHHhhccc-hHHHHHHHHH
Q 042011 293 VPSSPANTLFNLSQNSRRFTSSISHSHLLNLHGICKEYAKEFARNM-PRICEEYAAY 348 (361)
Q Consensus 293 ~~~~~~~~L~~l~l~~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~c~~~~~~ 348 (361)
.+|.+++.|++|++.+|.+-+.-+. .|..+ .+ ++.+-+. ...|+|...|
T Consensus 410 rAfsgl~~LE~LdL~~NaiaSIq~n-AFe~m-~L-----k~Lv~nSssflCDCql~W 459 (873)
T KOG4194|consen 410 RAFSGLEALEHLDLGDNAIASIQPN-AFEPM-EL-----KELVMNSSSFLCDCQLKW 459 (873)
T ss_pred hhhccCcccceecCCCCcceeeccc-ccccc-hh-----hhhhhcccceEEeccHHH
Confidence 7899999999999999998875553 44443 11 3333333 3458875444
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=4e-38 Score=281.81 Aligned_cols=312 Identities=22% Similarity=0.213 Sum_probs=239.9
Q ss_pred CCCeEeCCCccccCcCChhhhhccCCCCeEeCcCCcccccCCcccccCCCCCcEEEccCCCcccccccccccccCccccc
Q 042011 3 SLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLIAPNFQLN 82 (361)
Q Consensus 3 ~L~~L~L~~n~i~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~ 82 (361)
.|+.||||.|.|+ .||...|..-.++++|+|++|+|+ .+....|..+.+|..|.|++|+++...+.. |..+.+|+
T Consensus 150 alrslDLSrN~is-~i~~~sfp~~~ni~~L~La~N~It-~l~~~~F~~lnsL~tlkLsrNrittLp~r~---Fk~L~~L~ 224 (873)
T KOG4194|consen 150 ALRSLDLSRNLIS-EIPKPSFPAKVNIKKLNLASNRIT-TLETGHFDSLNSLLTLKLSRNRITTLPQRS---FKRLPKLE 224 (873)
T ss_pred hhhhhhhhhchhh-cccCCCCCCCCCceEEeecccccc-ccccccccccchheeeecccCcccccCHHH---hhhcchhh
Confidence 3445555555554 444444444455555555555554 333345555555555555555555443333 44455566
Q ss_pred EEeccCCCCCCCCCchhhcCCCCccEEEecCCcccCCcChHHHhcCCCCcEEEecCCcccCCCCCCcCCCCCcCEEEccC
Q 042011 83 SLSLSSDYGDGFIFPKFLYHQHDLALVDLSHIKMNGEFPTWLLENNTKLETLFLVNDSLTGPFRLPIHSHRWLEFLDISN 162 (361)
Q Consensus 83 ~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 162 (361)
.|+| ..|.+.......|.++++|+.|.+.+|++. .+.++.|..+.++++|+|+.|++..+....+-++..|+.|++++
T Consensus 225 ~LdL-nrN~irive~ltFqgL~Sl~nlklqrN~I~-kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~ 302 (873)
T KOG4194|consen 225 SLDL-NRNRIRIVEGLTFQGLPSLQNLKLQRNDIS-KLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSY 302 (873)
T ss_pred hhhc-cccceeeehhhhhcCchhhhhhhhhhcCcc-cccCcceeeecccceeecccchhhhhhcccccccchhhhhccch
Confidence 6666 555555444445566666666666666665 55666688899999999999999988888899999999999999
Q ss_pred CcCCccCChhhhccCCCccEEEecCCccccccCccccCCCCCCEEeccCCcCccccchhhhhCCCCCcEEEeecCCCCCc
Q 042011 163 NNFRCHIPVEIGDILPSLKFFNISMNALDGSIPSSFGNMNFLRVLDLSNNQLTGEIPEHLAVGCVNLESLALSNNSLEGH 242 (361)
Q Consensus 163 n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~ 242 (361)
|.|. .+.....+..++|++|+|++|+++...+..|..+..|++|++++|.++ .+.+..|..+++|++|||++|.+...
T Consensus 303 NaI~-rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~-~l~e~af~~lssL~~LdLr~N~ls~~ 380 (873)
T KOG4194|consen 303 NAIQ-RIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSID-HLAEGAFVGLSSLHKLDLRSNELSWC 380 (873)
T ss_pred hhhh-eeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchH-HHHhhHHHHhhhhhhhcCcCCeEEEE
Confidence 9998 665554455789999999999999888889999999999999999999 88888888999999999999998753
Q ss_pred ---ccccccCCCCCCEEeccCCcCCccchhhhhcCCCCCEEECcCCcccccCCCCCCCcCcceeeccccccccCCccccc
Q 042011 243 ---MFSRNFNLTNLEWLQLGGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGNVNVPSSPANTLFNLSQNSRRFTSSISHSH 319 (361)
Q Consensus 243 ---~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~~~~~ 319 (361)
....|.++++|+.|++.+|++......+|.++++|++|||.+|.|..+-|++|..+ .|++|-++.-.|.|+|...|
T Consensus 381 IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDCql~W 459 (873)
T KOG4194|consen 381 IEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDCQLKW 459 (873)
T ss_pred EecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccceEEeccHHH
Confidence 34457789999999999999997777899999999999999999999999999999 99999999999999999888
Q ss_pred ccccc
Q 042011 320 LLNLH 324 (361)
Q Consensus 320 ~~~~~ 324 (361)
+.+|.
T Consensus 460 l~qWl 464 (873)
T KOG4194|consen 460 LAQWL 464 (873)
T ss_pred HHHHH
Confidence 88773
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.95 E-value=9.3e-31 Score=236.74 Aligned_cols=300 Identities=26% Similarity=0.292 Sum_probs=172.6
Q ss_pred CCCCCeEeCCCccccCcCChhhhhccCCCCeEeCcCCcccccCCcccccCCCCCcEEEccCCCcccccccccccccCccc
Q 042011 1 MTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLIAPNFQ 80 (361)
Q Consensus 1 l~~L~~L~L~~n~i~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~ 80 (361)
|++++-|.|...++. .+|+ .++.+.+|++|.+++|++. ++. ..+..+++|+.+++.+|++... ..+..+..+..
T Consensus 31 Mt~~~WLkLnrt~L~-~vPe-EL~~lqkLEHLs~~HN~L~-~vh-GELs~Lp~LRsv~~R~N~LKns--GiP~diF~l~d 104 (1255)
T KOG0444|consen 31 MTQMTWLKLNRTKLE-QVPE-ELSRLQKLEHLSMAHNQLI-SVH-GELSDLPRLRSVIVRDNNLKNS--GIPTDIFRLKD 104 (1255)
T ss_pred hhheeEEEechhhhh-hChH-HHHHHhhhhhhhhhhhhhH-hhh-hhhccchhhHHHhhhccccccC--CCCchhccccc
Confidence 345556666666665 6776 6777777777777777776 444 4566777777777777766421 12222455667
Q ss_pred ccEEeccCCCCCCCCCchhhcCCCCccEEEecCCcccCCcChHHHhcCCCCcEEEecCCcccCCCCCCcCCCCCcCEEEc
Q 042011 81 LNSLSLSSDYGDGFIFPKFLYHQHDLALVDLSHIKMNGEFPTWLLENNTKLETLFLVNDSLTGPFRLPIHSHRWLEFLDI 160 (361)
Q Consensus 81 L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 160 (361)
|..|+| ++|++. ..|..+...+++-.|++|+|.|. ++|..+|-+++.|-.||+++|++. ..|..+..+..|++|++
T Consensus 105 Lt~lDL-ShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~L 180 (1255)
T KOG0444|consen 105 LTILDL-SHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKL 180 (1255)
T ss_pred ceeeec-chhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhc
Confidence 777888 777776 45667777777778888888876 777777777777778888888776 45666666777777777
Q ss_pred cCCcCCccCChhhhccCCCccEEEecCCccc-cccCccccCCCCCCEEeccCCcCccccchhhhhCCCCCcEEEeecCCC
Q 042011 161 SNNNFRCHIPVEIGDILPSLKFFNISMNALD-GSIPSSFGNMNFLRVLDLSNNQLTGEIPEHLAVGCVNLESLALSNNSL 239 (361)
Q Consensus 161 ~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l 239 (361)
++|++. .+.-.-...+.+|+.|.+++.+-+ ..+|..+..+.+|+.++++.|.+. .+|.++. .+++|+.|+|++|+|
T Consensus 181 s~NPL~-hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly-~l~~LrrLNLS~N~i 257 (1255)
T KOG0444|consen 181 SNNPLN-HFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLY-KLRNLRRLNLSGNKI 257 (1255)
T ss_pred CCChhh-HHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHh-hhhhhheeccCcCce
Confidence 777654 211111111223333333333221 123334444444444444444444 4444443 344444444444444
Q ss_pred CC----------------------cccccccCCCCCCEEeccCCcCCc-cchhhhhcCCCCCEEECcCCcccccCCCCCC
Q 042011 240 EG----------------------HMFSRNFNLTNLEWLQLGGNRFVG-EIPQSLSKCSSLEGLYLNNNSLSGNVNVPSS 296 (361)
Q Consensus 240 ~~----------------------~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~ 296 (361)
+. ..|..++.+++|+.|++.+|+++- -+|..++++..|+.+..++|.+. .+|+.++
T Consensus 258 teL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglc 336 (1255)
T KOG0444|consen 258 TELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLC 336 (1255)
T ss_pred eeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhh
Confidence 32 144445555555555555554431 14455555555555555555554 5666667
Q ss_pred CcCcceeeccccccccCC
Q 042011 297 PANTLFNLSQNSRRFTSS 314 (361)
Q Consensus 297 ~~~~L~~l~l~~N~~~~~ 314 (361)
.+..|+.|.++.|++.+.
T Consensus 337 RC~kL~kL~L~~NrLiTL 354 (1255)
T KOG0444|consen 337 RCVKLQKLKLDHNRLITL 354 (1255)
T ss_pred hhHHHHHhcccccceeec
Confidence 777777777777776643
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.95 E-value=4.3e-30 Score=232.47 Aligned_cols=297 Identities=24% Similarity=0.259 Sum_probs=198.8
Q ss_pred CCCeEeCCCccccC-cCChhhhhccCCCCeEeCcCCcccccCCcccccCCCCCcEEEccCCCcccccccccccccCcccc
Q 042011 3 SLRILDVSSNQLTG-SISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLIAPNFQL 81 (361)
Q Consensus 3 ~L~~L~L~~n~i~~-~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L 81 (361)
.|+.+++..|++.. .||. .+.++..|..||||+|+++ ..| ..+...+++-.|+||+|+|..+.... +..++.|
T Consensus 79 ~LRsv~~R~N~LKnsGiP~-diF~l~dLt~lDLShNqL~-EvP-~~LE~AKn~iVLNLS~N~IetIPn~l---finLtDL 152 (1255)
T KOG0444|consen 79 RLRSVIVRDNNLKNSGIPT-DIFRLKDLTILDLSHNQLR-EVP-TNLEYAKNSIVLNLSYNNIETIPNSL---FINLTDL 152 (1255)
T ss_pred hhHHHhhhccccccCCCCc-hhcccccceeeecchhhhh-hcc-hhhhhhcCcEEEEcccCccccCCchH---HHhhHhH
Confidence 34444444444321 2444 3344455555555555554 444 34444455555555555554332222 3444444
Q ss_pred cEEeccCCCCCCCCCchhhcCCCCccEEEecCCcccCCcChHHHhcCCCCcEEEecCCccc-CCCCCCcCCCCCcCEEEc
Q 042011 82 NSLSLSSDYGDGFIFPKFLYHQHDLALVDLSHIKMNGEFPTWLLENNTKLETLFLVNDSLT-GPFRLPIHSHRWLEFLDI 160 (361)
Q Consensus 82 ~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l 160 (361)
-+|+| ++|.+. ..|..+..+..|++|++++|.+. .+--..+-.+++|+.|.+++.+-+ .-+|.++..+.+|..+|+
T Consensus 153 LfLDL-S~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~-hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDl 229 (1255)
T KOG0444|consen 153 LFLDL-SNNRLE-MLPPQIRRLSMLQTLKLSNNPLN-HFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDL 229 (1255)
T ss_pred hhhcc-ccchhh-hcCHHHHHHhhhhhhhcCCChhh-HHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccc
Confidence 45555 444444 23334444555555555555433 111000112334444444443322 246778888889999999
Q ss_pred cCCcCCccCChhhhccCCCccEEEecCCccccccCccccCCCCCCEEeccCCcCccccchhhhhCCCCCcEEEeecCCCC
Q 042011 161 SNNNFRCHIPVEIGDILPSLKFFNISMNALDGSIPSSFGNMNFLRVLDLSNNQLTGEIPEHLAVGCVNLESLALSNNSLE 240 (361)
Q Consensus 161 ~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~ 240 (361)
+.|.+. .+|+.++. +++|+.|+||+|.++ .+........+|++|++++|.++ .+|..+. .+++|+.|.+.+|+++
T Consensus 230 S~N~Lp-~vPecly~-l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avc-KL~kL~kLy~n~NkL~ 304 (1255)
T KOG0444|consen 230 SENNLP-IVPECLYK-LRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVC-KLTKLTKLYANNNKLT 304 (1255)
T ss_pred cccCCC-cchHHHhh-hhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHh-hhHHHHHHHhccCccc
Confidence 999998 88988887 899999999999998 56666677788999999999999 9999988 7999999999999876
Q ss_pred C-cccccccCCCCCCEEeccCCcCCccchhhhhcCCCCCEEECcCCcccccCCCCCCCcCcceeeccccccccCCc
Q 042011 241 G-HMFSRNFNLTNLEWLQLGGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGNVNVPSSPANTLFNLSQNSRRFTSSI 315 (361)
Q Consensus 241 ~-~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~ 315 (361)
- .+|+.++.+..|+.+..++|.+. .+|+.++.|.+|+.|.++.|++- ..|+++--++-|..|++..|+-.-.+
T Consensus 305 FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMP 378 (1255)
T KOG0444|consen 305 FEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMP 378 (1255)
T ss_pred ccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCccCC
Confidence 3 37888999999999999999998 88999999999999999999987 57888888999999999998754333
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.94 E-value=9.2e-30 Score=219.10 Aligned_cols=290 Identities=27% Similarity=0.317 Sum_probs=190.8
Q ss_pred CCeEeCCCccccCcCChhhhhccCCCCeEeCcCCcccccCCcccccCCCCCcEEEccCCCcccccccccccccCcccccE
Q 042011 4 LRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLIAPNFQLNS 83 (361)
Q Consensus 4 L~~L~L~~n~i~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~ 83 (361)
++.++.++|.+. .+|+ .+..+-.|+.++..+|+++ +.| ..+..+.+|..+++.+|.+....+.. ..+..|++
T Consensus 116 l~~l~~s~n~~~-el~~-~i~~~~~l~dl~~~~N~i~-slp-~~~~~~~~l~~l~~~~n~l~~l~~~~----i~m~~L~~ 187 (565)
T KOG0472|consen 116 LVKLDCSSNELK-ELPD-SIGRLLDLEDLDATNNQIS-SLP-EDMVNLSKLSKLDLEGNKLKALPENH----IAMKRLKH 187 (565)
T ss_pred hhhhhcccccee-ecCc-hHHHHhhhhhhhccccccc-cCc-hHHHHHHHHHHhhccccchhhCCHHH----HHHHHHHh
Confidence 444555555554 4444 4555555555555555554 444 34555555555555555555443332 33557777
Q ss_pred EeccCCCCCCCCCchhhcCCCCccEEEecCCcccCCcChHHHhcCCCCcEEEecCCcccCCCCCCcCCCCCcCEEEccCC
Q 042011 84 LSLSSDYGDGFIFPKFLYHQHDLALVDLSHIKMNGEFPTWLLENNTKLETLFLVNDSLTGPFRLPIHSHRWLEFLDISNN 163 (361)
Q Consensus 84 L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 163 (361)
++. ..|.++ ..|..++.+.+|+.|++.+|++. .+|+ |.++..|++++++.|.+.....+....++++..||+..|
T Consensus 188 ld~-~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lPe--f~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdN 262 (565)
T KOG0472|consen 188 LDC-NSNLLE-TLPPELGGLESLELLYLRRNKIR-FLPE--FPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDN 262 (565)
T ss_pred ccc-chhhhh-cCChhhcchhhhHHHHhhhcccc-cCCC--CCccHHHHHHHhcccHHHhhHHHHhcccccceeeecccc
Confidence 777 666665 46667777777777788888776 6664 667777777777777776333333447777788888888
Q ss_pred cCCccCChhhhccCCCccEEEecCCccccccCccccCCCCCCEEeccCCcCc----------------------------
Q 042011 164 NFRCHIPVEIGDILPSLKFFNISMNALDGSIPSSFGNMNFLRVLDLSNNQLT---------------------------- 215 (361)
Q Consensus 164 ~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~---------------------------- 215 (361)
+++ +.|+++.- +.+|++||+|+|.++ ..|..++++ +|+.|.+.+|.+.
T Consensus 263 klk-e~Pde~cl-LrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS 338 (565)
T KOG0472|consen 263 KLK-EVPDEICL-LRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLS 338 (565)
T ss_pred ccc-cCchHHHH-hhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCC
Confidence 887 77877765 677888888888877 566666666 5666666666554
Q ss_pred ------------------------------------cccchhhh------------------------------------
Q 042011 216 ------------------------------------GEIPEHLA------------------------------------ 223 (361)
Q Consensus 216 ------------------------------------~~~~~~~~------------------------------------ 223 (361)
..+|..+|
T Consensus 339 ~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~ 418 (565)
T KOG0472|consen 339 QSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLV 418 (565)
T ss_pred CCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHH
Confidence 01111111
Q ss_pred -------------hCCCCCcEEEeecCCCCCcccccccCCCCCCEEeccCCcCCc-----------------------cc
Q 042011 224 -------------VGCVNLESLALSNNSLEGHMFSRNFNLTNLEWLQLGGNRFVG-----------------------EI 267 (361)
Q Consensus 224 -------------~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~-----------------------~~ 267 (361)
..+++|..|++++|-+.+ .|..++.+..|+.|+++.|++.. ..
T Consensus 419 lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~-LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd 497 (565)
T KOG0472|consen 419 LSNNKISFVPLELSQLQKLTFLDLSNNLLND-LPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVD 497 (565)
T ss_pred hhcCccccchHHHHhhhcceeeecccchhhh-cchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccC
Confidence 145677788888877766 56666677778888888776542 23
Q ss_pred hhhhhcCCCCCEEECcCCcccccCCCCCCCcCcceeecccccccc
Q 042011 268 PQSLSKCSSLEGLYLNNNSLSGNVNVPSSPANTLFNLSQNSRRFT 312 (361)
Q Consensus 268 ~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~L~~l~l~~N~~~ 312 (361)
++.+.++.+|..||+.+|.+. .+|..+.++.+|++|++.||+|.
T Consensus 498 ~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 498 PSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred hHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 445777889999999999997 57778899999999999999998
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.93 E-value=3.7e-28 Score=209.28 Aligned_cols=126 Identities=31% Similarity=0.359 Sum_probs=78.8
Q ss_pred CCCccEEEecCCccccccCccccCCCCCCEEeccCCcCccccchhhhhCCCCCcEEEeecCCCCCcccccccCCCCCCEE
Q 042011 177 LPSLKFFNISMNALDGSIPSSFGNMNFLRVLDLSNNQLTGEIPEHLAVGCVNLESLALSNNSLEGHMFSRNFNLTNLEWL 256 (361)
Q Consensus 177 l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L 256 (361)
+++|..|++++|.+. .+|..++.+..|+.++++.|++. .+|..+- .+..++.+-.++|++....++.+.++..|..|
T Consensus 434 l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y-~lq~lEtllas~nqi~~vd~~~l~nm~nL~tL 510 (565)
T KOG0472|consen 434 LQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLY-ELQTLETLLASNNQIGSVDPSGLKNMRNLTTL 510 (565)
T ss_pred hhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHh-hHHHHHHHHhccccccccChHHhhhhhhccee
Confidence 344444444444444 44444444444555555555444 4444433 33344444444455556666678899999999
Q ss_pred eccCCcCCccchhhhhcCCCCCEEECcCCcccccCCCCCCCcCcceeeccc
Q 042011 257 QLGGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGNVNVPSSPANTLFNLSQN 307 (361)
Q Consensus 257 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~L~~l~l~ 307 (361)
|+.+|.+. .+|..++++++|++|++++|.|+ .++...-.-.+...+..-
T Consensus 511 DL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr-~Pr~~iLmkgT~aiL~yl 559 (565)
T KOG0472|consen 511 DLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR-QPRHQILMKGTAAILSYL 559 (565)
T ss_pred ccCCCchh-hCChhhccccceeEEEecCCccC-CCHHHHhccChHHHHHHh
Confidence 99999999 78999999999999999999998 444443333333333333
No 9
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.92 E-value=1.4e-27 Score=205.29 Aligned_cols=294 Identities=16% Similarity=0.073 Sum_probs=194.2
Q ss_pred CCCeEeCcCCcccccCCcccccCCCCCcEEEccCCCcccccccccccccCcccccEEeccCCCCCCCCCchhhcCCCCcc
Q 042011 28 SIEELMLSNNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLIAPNFQLNSLSLSSDYGDGFIFPKFLYHQHDLA 107 (361)
Q Consensus 28 ~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~ 107 (361)
.-..|+|..|+|+ .+|..+|..+++|+.|||++|.|+.+.+.. |..+..+.+|.+-++|.|.......|.++..++
T Consensus 68 ~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~A---F~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slq 143 (498)
T KOG4237|consen 68 ETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDA---FKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQ 143 (498)
T ss_pred cceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHh---hhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHH
Confidence 4555666666665 555556666666666666666665555544 334444444444244666555555666666666
Q ss_pred EEEecCCcccCCcChHHHhcCCCCcEEEecCCcccCCCCCCcCCCCCcCEEEccCCcCCcc--CC---------hhhhcc
Q 042011 108 LVDLSHIKMNGEFPTWLLENNTKLETLFLVNDSLTGPFRLPIHSHRWLEFLDISNNNFRCH--IP---------VEIGDI 176 (361)
Q Consensus 108 ~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~---------~~~~~~ 176 (361)
.|.+.-|++. .++...|..++++..|.+..|.+...-..+|..+..++++.+..|.+... +| ...+.+
T Consensus 144 rLllNan~i~-Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsg 222 (498)
T KOG4237|consen 144 RLLLNANHIN-CIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSG 222 (498)
T ss_pred HHhcChhhhc-chhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhccc
Confidence 6666666665 45555566666666666666666544444566666666666665553210 00 000111
Q ss_pred CCCccEEEecCCccccccCccccCC-CCCCEEeccCCcCccccchhhhhCCCCCcEEEeecCCCCCcccccccCCCCCCE
Q 042011 177 LPSLKFFNISMNALDGSIPSSFGNM-NFLRVLDLSNNQLTGEIPEHLAVGCVNLESLALSNNSLEGHMFSRNFNLTNLEW 255 (361)
Q Consensus 177 l~~L~~L~L~~n~l~~~~~~~l~~~-~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~ 255 (361)
..-.....+.+.++....+..|... ..+..--.+.+...+..|...|..+++|+.|++++|+++++.+.+|.+..++++
T Consensus 223 arc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~e 302 (498)
T KOG4237|consen 223 ARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQE 302 (498)
T ss_pred ceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhh
Confidence 1222222333333332223323221 122222233444555778888889999999999999999999999999999999
Q ss_pred EeccCCcCCccchhhhhcCCCCCEEECcCCcccccCCCCCCCcCcceeeccccccccCCcccccccccccc
Q 042011 256 LQLGGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGNVNVPSSPANTLFNLSQNSRRFTSSISHSHLLNLHGI 326 (361)
Q Consensus 256 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~~~~~~~~~~~~ 326 (361)
|.|..|++...-...|.++..|+.|++.+|+|+...|.+|..+.+|.+|.+-+|+|.|.+-..|+..|.+-
T Consensus 303 L~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~ 373 (498)
T KOG4237|consen 303 LYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRK 373 (498)
T ss_pred hhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhh
Confidence 99999999977778899999999999999999999999999999999999999999999999999888553
No 10
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.91 E-value=1.2e-25 Score=211.72 Aligned_cols=291 Identities=24% Similarity=0.292 Sum_probs=228.9
Q ss_pred EeCCCccccCcCChhhhhccCCCCeEeCcCCcccccCCcccccCCCCCcEEEccCCCcccccccccccccCcccccEEec
Q 042011 7 LDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLIAPNFQLNSLSL 86 (361)
Q Consensus 7 L~L~~n~i~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l 86 (361)
|||++|+++ +- ....+++|+.|....|++. .+ -...++|+.|+.++|.++...+.. . -.+|+++++
T Consensus 183 ldLr~N~~~--~~--dls~~~~l~~l~c~rn~ls-~l----~~~g~~l~~L~a~~n~l~~~~~~p----~-p~nl~~~di 248 (1081)
T KOG0618|consen 183 LDLRYNEME--VL--DLSNLANLEVLHCERNQLS-EL----EISGPSLTALYADHNPLTTLDVHP----V-PLNLQYLDI 248 (1081)
T ss_pred eecccchhh--hh--hhhhccchhhhhhhhcccc-eE----EecCcchheeeeccCcceeecccc----c-cccceeeec
Confidence 777777664 22 3566777777777777765 22 234578888999999887332221 1 228999999
Q ss_pred cCCCCCCCCCchhhcCCCCccEEEecCCcccCCcChHHHhcCCCCcEEEecCCcccCCCCCCcCCCCCcCEEEccCCcCC
Q 042011 87 SSDYGDGFIFPKFLYHQHDLALVDLSHIKMNGEFPTWLLENNTKLETLFLVNDSLTGPFRLPIHSHRWLEFLDISNNNFR 166 (361)
Q Consensus 87 ~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 166 (361)
+.+.++. .|.++..+.+|+.++..+|.++ .+|.. ....++|+.+.+.+|++.. +|....+.++|++|++..|.+.
T Consensus 249 -s~n~l~~-lp~wi~~~~nle~l~~n~N~l~-~lp~r-i~~~~~L~~l~~~~nel~y-ip~~le~~~sL~tLdL~~N~L~ 323 (1081)
T KOG0618|consen 249 -SHNNLSN-LPEWIGACANLEALNANHNRLV-ALPLR-ISRITSLVSLSAAYNELEY-IPPFLEGLKSLRTLDLQSNNLP 323 (1081)
T ss_pred -chhhhhc-chHHHHhcccceEecccchhHH-hhHHH-HhhhhhHHHHHhhhhhhhh-CCCcccccceeeeeeehhcccc
Confidence 8888885 5589999999999999999997 78877 4567889999999998874 5666777888999999999887
Q ss_pred ccCChhhhcc-------------------------CCCccEEEecCCccccccCccccCCCCCCEEeccCCcCccccchh
Q 042011 167 CHIPVEIGDI-------------------------LPSLKFFNISMNALDGSIPSSFGNMNFLRVLDLSNNQLTGEIPEH 221 (361)
Q Consensus 167 ~~~~~~~~~~-------------------------l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~ 221 (361)
.+|+.++.. .+.|+.|++.+|.++..+...+.++.+|+.|+|++|++. ++|..
T Consensus 324 -~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas 401 (1081)
T KOG0618|consen 324 -SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPAS 401 (1081)
T ss_pred -ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc-cCCHH
Confidence 777654432 235778888999998888788999999999999999998 99999
Q ss_pred hhhCCCCCcEEEeecCCCCCcccccccCCCCCCEEeccCCcCCccchhhhhcCCCCCEEECcCCcccccCCCCCCCcCcc
Q 042011 222 LAVGCVNLESLALSNNSLEGHMFSRNFNLTNLEWLQLGGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGNVNVPSSPANTL 301 (361)
Q Consensus 222 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~L 301 (361)
...+++.|++|+|++|+++. +|..+..++.|++|...+|++. ..| .+..++.|+.+|++.|.++...-......++|
T Consensus 402 ~~~kle~LeeL~LSGNkL~~-Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~L 478 (1081)
T KOG0618|consen 402 KLRKLEELEELNLSGNKLTT-LPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNL 478 (1081)
T ss_pred HHhchHHhHHHhcccchhhh-hhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCccc
Confidence 88899999999999999988 6788999999999999999998 667 78899999999999999986433333344899
Q ss_pred eeeccccccccCCcccccccc
Q 042011 302 FNLSQNSRRFTSSISHSHLLN 322 (361)
Q Consensus 302 ~~l~l~~N~~~~~~~~~~~~~ 322 (361)
++||+.||... ......|+.
T Consensus 479 kyLdlSGN~~l-~~d~~~l~~ 498 (1081)
T KOG0618|consen 479 KYLDLSGNTRL-VFDHKTLKV 498 (1081)
T ss_pred ceeeccCCccc-ccchhhhHH
Confidence 99999999853 233334443
No 11
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.90 E-value=4.5e-23 Score=199.07 Aligned_cols=261 Identities=21% Similarity=0.226 Sum_probs=206.3
Q ss_pred CCeEeCCCccccCcCChhhhhccCCCCeEeCcCCcccccCCcccccCCCCCcEEEccCCCcccccccccccccCcccccE
Q 042011 4 LRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLIAPNFQLNS 83 (361)
Q Consensus 4 L~~L~L~~n~i~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~ 83 (361)
-..|+++++.++ .+|. .+. ++|+.|++++|+++ .+|. .+++|++|++++|+++.. +.. ..+|+.
T Consensus 203 ~~~LdLs~~~Lt-sLP~-~l~--~~L~~L~L~~N~Lt-~LP~----lp~~Lk~LdLs~N~LtsL-P~l------p~sL~~ 266 (788)
T PRK15387 203 NAVLNVGESGLT-TLPD-CLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSL-PVL------PPGLLE 266 (788)
T ss_pred CcEEEcCCCCCC-cCCc-chh--cCCCEEEccCCcCC-CCCC----CCCCCcEEEecCCccCcc-cCc------ccccce
Confidence 468999999998 8998 453 48999999999998 6772 368999999999999854 322 238999
Q ss_pred EeccCCCCCCCCCchhhcCCCCccEEEecCCcccCCcChHHHhcCCCCcEEEecCCcccCCCCCCcCCCCCcCEEEccCC
Q 042011 84 LSLSSDYGDGFIFPKFLYHQHDLALVDLSHIKMNGEFPTWLLENNTKLETLFLVNDSLTGPFRLPIHSHRWLEFLDISNN 163 (361)
Q Consensus 84 L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 163 (361)
|++ .+|.+.. +|.. ...|+.|++++|+++ .+|.. .++|+.|++++|++.+ +|.. ...|+.|++++|
T Consensus 267 L~L-s~N~L~~-Lp~l---p~~L~~L~Ls~N~Lt-~LP~~----p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N 332 (788)
T PRK15387 267 LSI-FSNPLTH-LPAL---PSGLCKLWIFGNQLT-SLPVL----PPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNN 332 (788)
T ss_pred eec-cCCchhh-hhhc---hhhcCEEECcCCccc-ccccc----ccccceeECCCCcccc-CCCC---cccccccccccC
Confidence 999 8888774 3332 357889999999998 66653 4789999999999986 3432 246888999999
Q ss_pred cCCccCChhhhccCCCccEEEecCCccccccCccccCCCCCCEEeccCCcCccccchhhhhCCCCCcEEEeecCCCCCcc
Q 042011 164 NFRCHIPVEIGDILPSLKFFNISMNALDGSIPSSFGNMNFLRVLDLSNNQLTGEIPEHLAVGCVNLESLALSNNSLEGHM 243 (361)
Q Consensus 164 ~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 243 (361)
.++ .+|.. .++|+.|++++|.++ .+|.. .++|+.|++++|.+. .+|. ...+|+.|++++|.+++ .
T Consensus 333 ~L~-~LP~l----p~~Lq~LdLS~N~Ls-~LP~l---p~~L~~L~Ls~N~L~-~LP~----l~~~L~~LdLs~N~Lt~-L 397 (788)
T PRK15387 333 QLT-SLPTL----PSGLQELSVSDNQLA-SLPTL---PSELYKLWAYNNRLT-SLPA----LPSGLKELIVSGNRLTS-L 397 (788)
T ss_pred ccc-ccccc----ccccceEecCCCccC-CCCCC---Ccccceehhhccccc-cCcc----cccccceEEecCCcccC-C
Confidence 998 67742 358999999999998 56653 357888999999998 6775 24579999999999987 3
Q ss_pred cccccCCCCCCEEeccCCcCCccchhhhhcCCCCCEEECcCCcccccCCCCCCCcCcceeeccccccccCCccc
Q 042011 244 FSRNFNLTNLEWLQLGGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGNVNVPSSPANTLFNLSQNSRRFTSSISH 317 (361)
Q Consensus 244 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~~~ 317 (361)
|.. .++|+.|++++|++++ +|..+ .+|+.|++++|+++ .+|..+..++.|..|++++|+|++..+.
T Consensus 398 P~l---~s~L~~LdLS~N~Lss-IP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~ 463 (788)
T PRK15387 398 PVL---PSELKELMVSGNRLTS-LPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 463 (788)
T ss_pred CCc---ccCCCEEEccCCcCCC-CCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHH
Confidence 432 3689999999999984 66533 47889999999998 5788888999999999999999987554
No 12
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.90 E-value=4.5e-26 Score=196.02 Aligned_cols=301 Identities=17% Similarity=0.141 Sum_probs=226.3
Q ss_pred eCcCCcccccCCcccccCCCCCcEEEccCCCcccccccccccccCcccccEEeccCCCCCCCCCchhhcCCCCccEEEec
Q 042011 33 MLSNNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLIAPNFQLNSLSLSSDYGDGFIFPKFLYHQHDLALVDLS 112 (361)
Q Consensus 33 ~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~ 112 (361)
+-++-.++ .+|. .+ .+.-..++|..|.|+.+.+.. |..+.+|+.|+| ++|.|+.+.|++|..++++..|-+.
T Consensus 52 dCr~~GL~-eVP~-~L--P~~tveirLdqN~I~~iP~~a---F~~l~~LRrLdL-S~N~Is~I~p~AF~GL~~l~~Lvly 123 (498)
T KOG4237|consen 52 DCRGKGLT-EVPA-NL--PPETVEIRLDQNQISSIPPGA---FKTLHRLRRLDL-SKNNISFIAPDAFKGLASLLSLVLY 123 (498)
T ss_pred EccCCCcc-cCcc-cC--CCcceEEEeccCCcccCChhh---ccchhhhceecc-cccchhhcChHhhhhhHhhhHHHhh
Confidence 34444454 5562 12 356789999999999877766 677779999999 9999999999999999988888777
Q ss_pred C-CcccCCcChHHHhcCCCCcEEEecCCcccCCCCCCcCCCCCcCEEEccCCcCCccCChhhhccCCCccEEEecCCccc
Q 042011 113 H-IKMNGEFPTWLLENNTKLETLFLVNDSLTGPFRLPIHSHRWLEFLDISNNNFRCHIPVEIGDILPSLKFFNISMNALD 191 (361)
Q Consensus 113 ~-n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~ 191 (361)
+ |+|+ .+|...|+++..++.|.+.-|++.-.....|..++++..|.+..|.+. .++...+..+..++.+.+..|.+-
T Consensus 124 g~NkI~-~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~i 201 (498)
T KOG4237|consen 124 GNNKIT-DLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFI 201 (498)
T ss_pred cCCchh-hhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCccc
Confidence 7 8898 888888999999999999999988777888999999999999999998 788766766888888888877632
Q ss_pred ------------cccCccccCCCCCCEEeccCCcCccccchhhhhCCC--CCcEEEeecCCCCC-cccccccCCCCCCEE
Q 042011 192 ------------GSIPSSFGNMNFLRVLDLSNNQLTGEIPEHLAVGCV--NLESLALSNNSLEG-HMFSRNFNLTNLEWL 256 (361)
Q Consensus 192 ------------~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~--~L~~L~L~~n~l~~-~~~~~~~~~~~L~~L 256 (361)
...|..+++.....-..+.+.++. .++..-| .+. .+..--.+.+.... .....|+.+++|+.|
T Consensus 202 cdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~-q~~a~kf-~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~l 279 (498)
T KOG4237|consen 202 CDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRIN-QEDARKF-LCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKL 279 (498)
T ss_pred cccccchhhhHHhhchhhcccceecchHHHHHHHhc-ccchhhh-hhhHHhHHHhhccccCcCCcChHHHHhhcccceEe
Confidence 122334455555555556666665 5554444 222 22211122232333 344568899999999
Q ss_pred eccCCcCCccchhhhhcCCCCCEEECcCCcccccCCCCCCCcCcceeeccccccccCCcccccccccccchhhhHHHhhc
Q 042011 257 QLGGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGNVNVPSSPANTLFNLSQNSRRFTSSISHSHLLNLHGICKEYAKEFAR 336 (361)
Q Consensus 257 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (361)
++++|++++.-+.+|.+..++++|.+..|++.......|.++..|+.|++++|++++.-|. .|..+..+ .....-
T Consensus 280 nlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~-aF~~~~~l----~~l~l~ 354 (498)
T KOG4237|consen 280 NLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPG-AFQTLFSL----STLNLL 354 (498)
T ss_pred ccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecc-ccccccee----eeeehc
Confidence 9999999998999999999999999999999877777899999999999999999987664 33333222 122345
Q ss_pred cchHHHHHHHHHhh
Q 042011 337 NMPRICEEYAAYLN 350 (361)
Q Consensus 337 ~~~~~c~~~~~~~~ 350 (361)
.+|++|+|+.+|+.
T Consensus 355 ~Np~~CnC~l~wl~ 368 (498)
T KOG4237|consen 355 SNPFNCNCRLAWLG 368 (498)
T ss_pred cCcccCccchHHHH
Confidence 68999999877764
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.89 E-value=7.3e-22 Score=203.51 Aligned_cols=286 Identities=22% Similarity=0.207 Sum_probs=187.3
Q ss_pred CCCeEeCCCccccCcCChhhhhccCCCCeEeCcCCcccccCCcccccCCCCCcEEEccCCCcccccccccccccCccccc
Q 042011 3 SLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLIAPNFQLN 82 (361)
Q Consensus 3 ~L~~L~L~~n~i~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~ 82 (361)
+|+.|++.++.++ .+|. .| ...+|++|++++|++. .++ ..+..+++|+.|+++++......+. +..+.+|+
T Consensus 590 ~Lr~L~~~~~~l~-~lP~-~f-~~~~L~~L~L~~s~l~-~L~-~~~~~l~~Lk~L~Ls~~~~l~~ip~----ls~l~~Le 660 (1153)
T PLN03210 590 KLRLLRWDKYPLR-CMPS-NF-RPENLVKLQMQGSKLE-KLW-DGVHSLTGLRNIDLRGSKNLKEIPD----LSMATNLE 660 (1153)
T ss_pred ccEEEEecCCCCC-CCCC-cC-CccCCcEEECcCcccc-ccc-cccccCCCCCEEECCCCCCcCcCCc----cccCCccc
Confidence 3666666666665 6666 34 4577788888877776 555 4566777888888877653333332 34456788
Q ss_pred EEeccCCCCCCCCCchhhcCCCCccEEEecCCcccCCcChHHHhcCCCCcEEEecCCcccCCCCCCcCCCCCcCEEEccC
Q 042011 83 SLSLSSDYGDGFIFPKFLYHQHDLALVDLSHIKMNGEFPTWLLENNTKLETLFLVNDSLTGPFRLPIHSHRWLEFLDISN 162 (361)
Q Consensus 83 ~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 162 (361)
+|++ .+|......|..+..+++|+.|++++|.....+|... ++++|++|++++|.....+|.. ..+|+.|++++
T Consensus 661 ~L~L-~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i--~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~ 734 (1153)
T PLN03210 661 TLKL-SDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI--NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDE 734 (1153)
T ss_pred EEEe-cCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC--CCCCCCEEeCCCCCCccccccc---cCCcCeeecCC
Confidence 8888 6555545667777778888888888765333666542 5777777877777544333322 34677777777
Q ss_pred CcCCccCChhh-----------------------------hccCCCccEEEecCCccccccCccccCCCCCCEEeccCCc
Q 042011 163 NNFRCHIPVEI-----------------------------GDILPSLKFFNISMNALDGSIPSSFGNMNFLRVLDLSNNQ 213 (361)
Q Consensus 163 n~l~~~~~~~~-----------------------------~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~ 213 (361)
|.+. .+|..+ ....++|+.|++++|...+.+|..++++++|+.|++++|.
T Consensus 735 n~i~-~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~ 813 (1153)
T PLN03210 735 TAIE-EFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCI 813 (1153)
T ss_pred Cccc-cccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCC
Confidence 7765 555432 1112466777777776555677777777788888887764
Q ss_pred CccccchhhhhCCCCCcEEEeecCCCCCcccccccCCCCCCEEeccCCcCCccchhhhhcCCCCCEEECcCCcccccCCC
Q 042011 214 LTGEIPEHLAVGCVNLESLALSNNSLEGHMFSRNFNLTNLEWLQLGGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGNVNV 293 (361)
Q Consensus 214 l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 293 (361)
..+.+|... .+++|+.|++++|..-...|. ..++|+.|++++|.++ .+|..+..+++|+.|++++|.--..+|.
T Consensus 814 ~L~~LP~~~--~L~sL~~L~Ls~c~~L~~~p~---~~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~ 887 (1153)
T PLN03210 814 NLETLPTGI--NLESLESLDLSGCSRLRTFPD---ISTNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSL 887 (1153)
T ss_pred CcCeeCCCC--CccccCEEECCCCCccccccc---cccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCc
Confidence 333666654 577788888877654333333 2357788888888887 5777788888888888887443334666
Q ss_pred CCCCcCcceeecccccc
Q 042011 294 PSSPANTLFNLSQNSRR 310 (361)
Q Consensus 294 ~~~~~~~L~~l~l~~N~ 310 (361)
.+..+++|+.++++++.
T Consensus 888 ~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 888 NISKLKHLETVDFSDCG 904 (1153)
T ss_pred ccccccCCCeeecCCCc
Confidence 66777777777777764
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.87 E-value=6.8e-22 Score=190.92 Aligned_cols=244 Identities=23% Similarity=0.218 Sum_probs=196.1
Q ss_pred CCCCeEeCCCccccCcCChhhhhccCCCCeEeCcCCcccccCCcccccCCCCCcEEEccCCCcccccccccccccCcccc
Q 042011 2 TSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLIAPNFQL 81 (361)
Q Consensus 2 ~~L~~L~L~~n~i~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L 81 (361)
++|+.|++++|+++ .+|. ..++|++|++++|+++ .+|. ..++|+.|++++|.+.... .. ..+|
T Consensus 222 ~~L~~L~L~~N~Lt-~LP~----lp~~Lk~LdLs~N~Lt-sLP~----lp~sL~~L~Ls~N~L~~Lp-~l------p~~L 284 (788)
T PRK15387 222 AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLT-SLPV----LPPGLLELSIFSNPLTHLP-AL------PSGL 284 (788)
T ss_pred cCCCEEEccCCcCC-CCCC----CCCCCcEEEecCCccC-cccC----cccccceeeccCCchhhhh-hc------hhhc
Confidence 36899999999998 8887 2689999999999998 6772 2478999999999987532 22 1378
Q ss_pred cEEeccCCCCCCCCCchhhcCCCCccEEEecCCcccCCcChHHHhcCCCCcEEEecCCcccCCCCCCcCCCCCcCEEEcc
Q 042011 82 NSLSLSSDYGDGFIFPKFLYHQHDLALVDLSHIKMNGEFPTWLLENNTKLETLFLVNDSLTGPFRLPIHSHRWLEFLDIS 161 (361)
Q Consensus 82 ~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 161 (361)
+.|++ .+|.++.. |. ..++|+.|++++|+++ .+|.. ...|+.|++++|.+++ +|.. ..+|+.|+++
T Consensus 285 ~~L~L-s~N~Lt~L-P~---~p~~L~~LdLS~N~L~-~Lp~l----p~~L~~L~Ls~N~L~~-LP~l---p~~Lq~LdLS 350 (788)
T PRK15387 285 CKLWI-FGNQLTSL-PV---LPPGLQELSVSDNQLA-SLPAL----PSELCKLWAYNNQLTS-LPTL---PSGLQELSVS 350 (788)
T ss_pred CEEEC-cCCccccc-cc---cccccceeECCCCccc-cCCCC----cccccccccccCcccc-cccc---ccccceEecC
Confidence 99999 88888753 43 2478999999999998 56642 3468899999999975 4431 2479999999
Q ss_pred CCcCCccCChhhhccCCCccEEEecCCccccccCccccCCCCCCEEeccCCcCccccchhhhhCCCCCcEEEeecCCCCC
Q 042011 162 NNNFRCHIPVEIGDILPSLKFFNISMNALDGSIPSSFGNMNFLRVLDLSNNQLTGEIPEHLAVGCVNLESLALSNNSLEG 241 (361)
Q Consensus 162 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~ 241 (361)
+|+++ .+|.. .++|+.|++++|.++ .+|.. ..+|+.|++++|.++ .+|. ..++|+.|++++|++++
T Consensus 351 ~N~Ls-~LP~l----p~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt-~LP~----l~s~L~~LdLS~N~Lss 416 (788)
T PRK15387 351 DNQLA-SLPTL----PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLT-SLPV----LPSELKELMVSGNRLTS 416 (788)
T ss_pred CCccC-CCCCC----Ccccceehhhccccc-cCccc---ccccceEEecCCccc-CCCC----cccCCCEEEccCCcCCC
Confidence 99998 77753 358999999999998 56653 357999999999998 7775 34689999999999987
Q ss_pred cccccccCCCCCCEEeccCCcCCccchhhhhcCCCCCEEECcCCcccccCCCCC
Q 042011 242 HMFSRNFNLTNLEWLQLGGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGNVNVPS 295 (361)
Q Consensus 242 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~ 295 (361)
+|.. ..+|+.|++++|+++ .+|..+..+++|+.+++++|.+++..+..+
T Consensus 417 -IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 417 -LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred -CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 4443 357889999999999 789999999999999999999998765544
No 15
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.86 E-value=6.1e-20 Score=189.34 Aligned_cols=290 Identities=18% Similarity=0.149 Sum_probs=197.0
Q ss_pred CCCCCeEeCCCcc------ccCcCChhhhhccC-CCCeEeCcCCcccccCCcccccCCCCCcEEEccCCCcccccccccc
Q 042011 1 MTSLRILDVSSNQ------LTGSISSSPLVHLT-SIEELMLSNNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHS 73 (361)
Q Consensus 1 l~~L~~L~L~~n~------i~~~i~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 73 (361)
|++|+.|.+.++. +...+|. .|..++ +|+.|++.++.++ .+|. .| ...+|++|++++|.+... +.
T Consensus 557 m~~L~~L~~~~~~~~~~~~~~~~lp~-~~~~lp~~Lr~L~~~~~~l~-~lP~-~f-~~~~L~~L~L~~s~l~~L-~~--- 628 (1153)
T PLN03210 557 MRNLLFLKFYTKKWDQKKEVRWHLPE-GFDYLPPKLRLLRWDKYPLR-CMPS-NF-RPENLVKLQMQGSKLEKL-WD--- 628 (1153)
T ss_pred CccccEEEEecccccccccceeecCc-chhhcCcccEEEEecCCCCC-CCCC-cC-CccCCcEEECcCcccccc-cc---
Confidence 4567777775442 2224555 455553 5888888887776 6663 34 567888888888877643 22
Q ss_pred cccCcccccEEeccCCCCCCCCCchhhcCCCCccEEEecCCcccCCcChHHHhcCCCCcEEEecCCcccCCCCCCcCCCC
Q 042011 74 LIAPNFQLNSLSLSSDYGDGFIFPKFLYHQHDLALVDLSHIKMNGEFPTWLLENNTKLETLFLVNDSLTGPFRLPIHSHR 153 (361)
Q Consensus 74 ~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 153 (361)
....+.+|+.+++ +++......| .++.+++|++|++++|.....+|.. ++.+++|+.|++++|.....+|..+ .++
T Consensus 629 ~~~~l~~Lk~L~L-s~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~s-i~~L~~L~~L~L~~c~~L~~Lp~~i-~l~ 704 (1153)
T PLN03210 629 GVHSLTGLRNIDL-RGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSS-IQYLNKLEDLDMSRCENLEILPTGI-NLK 704 (1153)
T ss_pred ccccCCCCCEEEC-CCCCCcCcCC-ccccCCcccEEEecCCCCccccchh-hhccCCCCEEeCCCCCCcCccCCcC-CCC
Confidence 2355668888888 5443333444 3777888999999887654577776 6788889999998875444556554 678
Q ss_pred CcCEEEccCCcCCccCChhhhccCCCccEEEecCCccccccCccc------------------------------cCCCC
Q 042011 154 WLEFLDISNNNFRCHIPVEIGDILPSLKFFNISMNALDGSIPSSF------------------------------GNMNF 203 (361)
Q Consensus 154 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l------------------------------~~~~~ 203 (361)
+|+.|++++|.....+|.. .++|+.|++++|.+. .+|..+ ..+++
T Consensus 705 sL~~L~Lsgc~~L~~~p~~----~~nL~~L~L~~n~i~-~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~s 779 (1153)
T PLN03210 705 SLYRLNLSGCSRLKSFPDI----STNISWLDLDETAIE-EFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPS 779 (1153)
T ss_pred CCCEEeCCCCCCccccccc----cCCcCeeecCCCccc-cccccccccccccccccccchhhccccccccchhhhhcccc
Confidence 8889999888654345432 457888888888876 444322 11246
Q ss_pred CCEEeccCCcCccccchhhhhCCCCCcEEEeecCCCCCcccccccCCCCCCEEeccCCcCCccchhhhhcCCCCCEEECc
Q 042011 204 LRVLDLSNNQLTGEIPEHLAVGCVNLESLALSNNSLEGHMFSRNFNLTNLEWLQLGGNRFVGEIPQSLSKCSSLEGLYLN 283 (361)
Q Consensus 204 L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 283 (361)
|+.|++++|...+.+|..+. .+++|+.|++++|..-+..|... .+++|+.|++++|......|.. .++|+.|+++
T Consensus 780 L~~L~Ls~n~~l~~lP~si~-~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls 854 (1153)
T PLN03210 780 LTRLFLSDIPSLVELPSSIQ-NLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLS 854 (1153)
T ss_pred chheeCCCCCCccccChhhh-CCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECC
Confidence 77777777765556777665 78888888888765433345444 6778888888887544444432 3678899999
Q ss_pred CCcccccCCCCCCCcCcceeeccccc-cccC
Q 042011 284 NNSLSGNVNVPSSPANTLFNLSQNSR-RFTS 313 (361)
Q Consensus 284 ~N~l~~~~~~~~~~~~~L~~l~l~~N-~~~~ 313 (361)
+|.++ .+|.++..+++|+.|++.++ .+.+
T Consensus 855 ~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~ 884 (1153)
T PLN03210 855 RTGIE-EVPWWIEKFSNLSFLDMNGCNNLQR 884 (1153)
T ss_pred CCCCc-cChHHHhcCCCCCEEECCCCCCcCc
Confidence 99887 57888888999999999984 4443
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.85 E-value=2.3e-21 Score=188.23 Aligned_cols=246 Identities=26% Similarity=0.372 Sum_probs=175.2
Q ss_pred CCCeEeCCCccccCcCChhhhhccCCCCeEeCcCCcccccCCcccccCCCCCcEEEccCCCcccccccccccccCccccc
Q 042011 3 SLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLIAPNFQLN 82 (361)
Q Consensus 3 ~L~~L~L~~n~i~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~ 82 (361)
+.+.|++++++++ .+|. .+ .++|+.|+|++|+++ .+|.. + ..+|++|++++|.++.. +.. +. .+|+
T Consensus 179 ~~~~L~L~~~~Lt-sLP~-~I--p~~L~~L~Ls~N~Lt-sLP~~-l--~~nL~~L~Ls~N~LtsL-P~~---l~--~~L~ 244 (754)
T PRK15370 179 NKTELRLKILGLT-TIPA-CI--PEQITTLILDNNELK-SLPEN-L--QGNIKTLYANSNQLTSI-PAT---LP--DTIQ 244 (754)
T ss_pred CceEEEeCCCCcC-cCCc-cc--ccCCcEEEecCCCCC-cCChh-h--ccCCCEEECCCCccccC-Chh---hh--cccc
Confidence 4578888888887 7886 33 357889999999888 67743 3 25789999999888743 222 11 2788
Q ss_pred EEeccCCCCCCCCCchhhcCCCCccEEEecCCcccCCcChHHHhcCCCCcEEEecCCcccCCCCCCcCCCCCcCEEEccC
Q 042011 83 SLSLSSDYGDGFIFPKFLYHQHDLALVDLSHIKMNGEFPTWLLENNTKLETLFLVNDSLTGPFRLPIHSHRWLEFLDISN 162 (361)
Q Consensus 83 ~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 162 (361)
.|++ ++|.+.. +|..+. ..|+.|++++|+++ .+|..+ .++|+.|++++|+++. +|..+. ++|+.|++++
T Consensus 245 ~L~L-s~N~L~~-LP~~l~--s~L~~L~Ls~N~L~-~LP~~l---~~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~ 313 (754)
T PRK15370 245 EMEL-SINRITE-LPERLP--SALQSLDLFHNKIS-CLPENL---PEELRYLSVYDNSIRT-LPAHLP--SGITHLNVQS 313 (754)
T ss_pred EEEC-cCCccCc-CChhHh--CCCCEEECcCCccC-cccccc---CCCCcEEECCCCcccc-Ccccch--hhHHHHHhcC
Confidence 8888 7777773 454443 47888888888887 677653 2578888888888874 344332 4688888888
Q ss_pred CcCCccCChhhhccCCCccEEEecCCccccccCccccCCCCCCEEeccCCcCccccchhhhhCCCCCcEEEeecCCCCCc
Q 042011 163 NNFRCHIPVEIGDILPSLKFFNISMNALDGSIPSSFGNMNFLRVLDLSNNQLTGEIPEHLAVGCVNLESLALSNNSLEGH 242 (361)
Q Consensus 163 n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~ 242 (361)
|.++ .+|..+. ++|+.|++++|.++ .+|..+. ++|+.|++++|.+. .+|..+ .++|+.|++++|+++..
T Consensus 314 N~Lt-~LP~~l~---~sL~~L~Ls~N~Lt-~LP~~l~--~sL~~L~Ls~N~L~-~LP~~l---p~~L~~LdLs~N~Lt~L 382 (754)
T PRK15370 314 NSLT-ALPETLP---PGLKTLEAGENALT-SLPASLP--PELQVLDVSKNQIT-VLPETL---PPTITTLDVSRNALTNL 382 (754)
T ss_pred Cccc-cCCcccc---ccceeccccCCccc-cCChhhc--CcccEEECCCCCCC-cCChhh---cCCcCEEECCCCcCCCC
Confidence 8887 6765543 57888888888887 4665543 67888888888887 677644 36788888888888763
Q ss_pred ccccccCCCCCCEEeccCCcCCccchhhh----hcCCCCCEEECcCCccc
Q 042011 243 MFSRNFNLTNLEWLQLGGNRFVGEIPQSL----SKCSSLEGLYLNNNSLS 288 (361)
Q Consensus 243 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~----~~l~~L~~L~l~~N~l~ 288 (361)
|..+. ..|+.|++++|++. .+|..+ ..++.+..+++.+|.++
T Consensus 383 -P~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 383 -PENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred -CHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 44432 36888888888887 445443 33477888888888876
No 17
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.85 E-value=4.2e-23 Score=194.71 Aligned_cols=267 Identities=25% Similarity=0.258 Sum_probs=147.1
Q ss_pred CCCCeEeCCCccccCcCChhhhhccCCCCeEeCcCCcccccCCcccccCCCCCcEEEccCCCcccccccccccccCcccc
Q 042011 2 TSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLIAPNFQL 81 (361)
Q Consensus 2 ~~L~~L~L~~n~i~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L 81 (361)
++++.|+.++|.++ .+-. -..-.+|+++++++|+++ .+| .-...+.+|+.+++.+|+++..... ..+..+|
T Consensus 219 ~~l~~L~a~~n~l~-~~~~--~p~p~nl~~~dis~n~l~-~lp-~wi~~~~nle~l~~n~N~l~~lp~r----i~~~~~L 289 (1081)
T KOG0618|consen 219 PSLTALYADHNPLT-TLDV--HPVPLNLQYLDISHNNLS-NLP-EWIGACANLEALNANHNRLVALPLR----ISRITSL 289 (1081)
T ss_pred cchheeeeccCcce-eecc--ccccccceeeecchhhhh-cch-HHHHhcccceEecccchhHHhhHHH----HhhhhhH
Confidence 35566666666665 2221 112346777777777766 566 4566677777777777766433222 3445566
Q ss_pred cEEeccCCCCCCCCCchhhcCCCCccEEEecCCcccCCcChHHHhcCCC-CcEEEecCCcccCCCCCCcCCCCCcCEEEc
Q 042011 82 NSLSLSSDYGDGFIFPKFLYHQHDLALVDLSHIKMNGEFPTWLLENNTK-LETLFLVNDSLTGPFRLPIHSHRWLEFLDI 160 (361)
Q Consensus 82 ~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 160 (361)
+.|.+ ..|.+. ..|....+.+.|++|++..|.+. .+|+.++..... +..+..+.|++.......=..++.|+.|.+
T Consensus 290 ~~l~~-~~nel~-yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~Lyl 366 (1081)
T KOG0618|consen 290 VSLSA-AYNELE-YIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYL 366 (1081)
T ss_pred HHHHh-hhhhhh-hCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHH
Confidence 66666 666665 34555666677777777777765 566554444443 555555555554322222223344666666
Q ss_pred cCCcCCccCChhhhccCCCccEEEecCCccccccCccccCCCCCCEEeccCCcCccccchhhhhCCCCCcEEEeecCCCC
Q 042011 161 SNNNFRCHIPVEIGDILPSLKFFNISMNALDGSIPSSFGNMNFLRVLDLSNNQLTGEIPEHLAVGCVNLESLALSNNSLE 240 (361)
Q Consensus 161 ~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~ 240 (361)
.+|.+++..-..+ .++++|+.|+|++|.+.......+.++..|++|++++|+++ .+|..+. .++.|++|....|++.
T Consensus 367 anN~Ltd~c~p~l-~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva-~~~~L~tL~ahsN~l~ 443 (1081)
T KOG0618|consen 367 ANNHLTDSCFPVL-VNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVA-NLGRLHTLRAHSNQLL 443 (1081)
T ss_pred hcCcccccchhhh-ccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHH-hhhhhHHHhhcCCcee
Confidence 6666653332222 23556666666666665333334555566666666666666 5665554 5666666666666655
Q ss_pred CcccccccCCCCCCEEeccCCcCCccc-hhhhhcCCCCCEEECcCCc
Q 042011 241 GHMFSRNFNLTNLEWLQLGGNRFVGEI-PQSLSKCSSLEGLYLNNNS 286 (361)
Q Consensus 241 ~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~l~~N~ 286 (361)
. .| .+..++.|+.+|++.|.++... +... ..++|++||+++|.
T Consensus 444 ~-fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~-p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 444 S-FP-ELAQLPQLKVLDLSCNNLSEVTLPEAL-PSPNLKYLDLSGNT 487 (1081)
T ss_pred e-ch-hhhhcCcceEEecccchhhhhhhhhhC-CCcccceeeccCCc
Confidence 4 23 5555666666666666655322 2222 12566666666664
No 18
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.84 E-value=1.2e-21 Score=176.03 Aligned_cols=283 Identities=21% Similarity=0.136 Sum_probs=137.6
Q ss_pred eEeCCCccccCcCChhhhhccCCCCeEeCcCCccccc----CCcccccCCCCCcEEEccCCCcccccc---cccccccCc
Q 042011 6 ILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIP----ISLEPLFNHSRLKIFYADNNELNAEIT---QSHSLIAPN 78 (361)
Q Consensus 6 ~L~L~~n~i~~~i~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~~l~~L~~L~l~~n~~~~~~~---~~~~~~~~~ 78 (361)
.|+|.++.+++.-....|..+++|+.|+++++.++.. ++ ..+...+.+++++++++.+..... .....+..+
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~-~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~ 80 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALA-SALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKG 80 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHH-HHHhhCCCceEEeccccccCCcchHHHHHHHHHHhc
Confidence 5788888887433333778888999999999988521 33 345677889999999887652000 000112223
Q ss_pred ccccEEeccCCCCCCCCCchhhcCCCC---ccEEEecCCcccCCcChHHHhcCCCCcEEEecCCcccCCCCCCcCCC-CC
Q 042011 79 FQLNSLSLSSDYGDGFIFPKFLYHQHD---LALVDLSHIKMNGEFPTWLLENNTKLETLFLVNDSLTGPFRLPIHSH-RW 154 (361)
Q Consensus 79 ~~L~~L~l~~~~~~~~~~~~~l~~l~~---L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l-~~ 154 (361)
.+|++|++ +++.+....+..+..+.+ |++|++++|.+++.... .....+..+ ++
T Consensus 81 ~~L~~L~l-~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~---------------------~l~~~l~~~~~~ 138 (319)
T cd00116 81 CGLQELDL-SDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLR---------------------LLAKGLKDLPPA 138 (319)
T ss_pred CceeEEEc-cCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHH---------------------HHHHHHHhCCCC
Confidence 35555555 444443333333333332 55555555444321111 111122233 44
Q ss_pred cCEEEccCCcCCccCChh---hhccCCCccEEEecCCcccc----ccCccccCCCCCCEEeccCCcCccccchh---hhh
Q 042011 155 LEFLDISNNNFRCHIPVE---IGDILPSLKFFNISMNALDG----SIPSSFGNMNFLRVLDLSNNQLTGEIPEH---LAV 224 (361)
Q Consensus 155 L~~L~l~~n~l~~~~~~~---~~~~l~~L~~L~L~~n~l~~----~~~~~l~~~~~L~~L~l~~n~l~~~~~~~---~~~ 224 (361)
|+.|++++|.+++..... .+..+++|++|++++|.+++ .++..+...++|++|++++|.+++..... .+.
T Consensus 139 L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~ 218 (319)
T cd00116 139 LEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLA 218 (319)
T ss_pred ceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhc
Confidence 555555555544211111 11123455555555555542 11222333445555555555554221111 112
Q ss_pred CCCCCcEEEeecCCCCCccccccc-----CCCCCCEEeccCCcCCc----cchhhhhcCCCCCEEECcCCccccc----C
Q 042011 225 GCVNLESLALSNNSLEGHMFSRNF-----NLTNLEWLQLGGNRFVG----EIPQSLSKCSSLEGLYLNNNSLSGN----V 291 (361)
Q Consensus 225 ~~~~L~~L~L~~n~l~~~~~~~~~-----~~~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~l~~N~l~~~----~ 291 (361)
.+++|++|++++|.+++.....+. ..+.|+.|++++|.+++ .+...+..+++|+.+++++|.+++. .
T Consensus 219 ~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~ 298 (319)
T cd00116 219 SLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLL 298 (319)
T ss_pred ccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHH
Confidence 345566666666655532111111 13566666666666652 1233444556666666666666643 2
Q ss_pred CCCCCCc-Ccceeeccccccc
Q 042011 292 NVPSSPA-NTLFNLSQNSRRF 311 (361)
Q Consensus 292 ~~~~~~~-~~L~~l~l~~N~~ 311 (361)
...+... +.++++++.+|+|
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 299 AESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred HHHHhhcCCchhhcccCCCCC
Confidence 2222222 5566666666554
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.83 E-value=3e-20 Score=180.46 Aligned_cols=247 Identities=19% Similarity=0.292 Sum_probs=196.0
Q ss_pred CCCCeEeCcCCcccccCCcccccCCCCCcEEEccCCCcccccccccccccCcccccEEeccCCCCCCCCCchhhcCCCCc
Q 042011 27 TSIEELMLSNNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLIAPNFQLNSLSLSSDYGDGFIFPKFLYHQHDL 106 (361)
Q Consensus 27 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L 106 (361)
.+...|++++++++ .+|. .+ .+.|+.|++++|.++...... . .+|++|++ ++|.++. +|..+ ...|
T Consensus 178 ~~~~~L~L~~~~Lt-sLP~-~I--p~~L~~L~Ls~N~LtsLP~~l----~--~nL~~L~L-s~N~Lts-LP~~l--~~~L 243 (754)
T PRK15370 178 NNKTELRLKILGLT-TIPA-CI--PEQITTLILDNNELKSLPENL----Q--GNIKTLYA-NSNQLTS-IPATL--PDTI 243 (754)
T ss_pred cCceEEEeCCCCcC-cCCc-cc--ccCCcEEEecCCCCCcCChhh----c--cCCCEEEC-CCCcccc-CChhh--hccc
Confidence 56889999999998 6773 23 358999999999998543222 1 38999999 8888874 45544 3479
Q ss_pred cEEEecCCcccCCcChHHHhcCCCCcEEEecCCcccCCCCCCcCCCCCcCEEEccCCcCCccCChhhhccCCCccEEEec
Q 042011 107 ALVDLSHIKMNGEFPTWLLENNTKLETLFLVNDSLTGPFRLPIHSHRWLEFLDISNNNFRCHIPVEIGDILPSLKFFNIS 186 (361)
Q Consensus 107 ~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~ 186 (361)
+.|++++|.+. .+|..+. .+|+.|++++|++.. +|..+. ++|+.|++++|+++ .+|..+. ++|+.|+++
T Consensus 244 ~~L~Ls~N~L~-~LP~~l~---s~L~~L~Ls~N~L~~-LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp---~sL~~L~Ls 312 (754)
T PRK15370 244 QEMELSINRIT-ELPERLP---SALQSLDLFHNKISC-LPENLP--EELRYLSVYDNSIR-TLPAHLP---SGITHLNVQ 312 (754)
T ss_pred cEEECcCCccC-cCChhHh---CCCCEEECcCCccCc-cccccC--CCCcEEECCCCccc-cCcccch---hhHHHHHhc
Confidence 99999999998 8887643 589999999999984 565543 58999999999998 7876543 479999999
Q ss_pred CCccccccCccccCCCCCCEEeccCCcCccccchhhhhCCCCCcEEEeecCCCCCcccccccCCCCCCEEeccCCcCCcc
Q 042011 187 MNALDGSIPSSFGNMNFLRVLDLSNNQLTGEIPEHLAVGCVNLESLALSNNSLEGHMFSRNFNLTNLEWLQLGGNRFVGE 266 (361)
Q Consensus 187 ~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~ 266 (361)
+|.++ .+|..+ .++|++|++++|.++ .+|..+ .++|+.|++++|+++. .|..+ .++|+.|++++|+++ .
T Consensus 313 ~N~Lt-~LP~~l--~~sL~~L~Ls~N~Lt-~LP~~l---~~sL~~L~Ls~N~L~~-LP~~l--p~~L~~LdLs~N~Lt-~ 381 (754)
T PRK15370 313 SNSLT-ALPETL--PPGLKTLEAGENALT-SLPASL---PPELQVLDVSKNQITV-LPETL--PPTITTLDVSRNALT-N 381 (754)
T ss_pred CCccc-cCCccc--cccceeccccCCccc-cCChhh---cCcccEEECCCCCCCc-CChhh--cCCcCEEECCCCcCC-C
Confidence 99998 566544 368999999999998 788654 4789999999999986 45544 368999999999999 5
Q ss_pred chhhhhcCCCCCEEECcCCcccccCCCCC----CCcCcceeecccccccc
Q 042011 267 IPQSLSKCSSLEGLYLNNNSLSGNVNVPS----SPANTLFNLSQNSRRFT 312 (361)
Q Consensus 267 ~~~~~~~l~~L~~L~l~~N~l~~~~~~~~----~~~~~L~~l~l~~N~~~ 312 (361)
+|..+. .+|+.|++++|++++ +|..+ ...+.+..+++.+|+++
T Consensus 382 LP~~l~--~sL~~LdLs~N~L~~-LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 382 LPENLP--AALQIMQASRNNLVR-LPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred CCHhHH--HHHHHHhhccCCccc-CchhHHHHhhcCCCccEEEeeCCCcc
Confidence 666654 479999999999984 45443 44578899999999986
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.81 E-value=4.6e-21 Score=172.31 Aligned_cols=258 Identities=24% Similarity=0.261 Sum_probs=170.3
Q ss_pred eEeCcCCcccccCCcccccCCCCCcEEEccCCCcccccccccccccCcccccEEeccCCCCCCCCCchhhcCCCCccEEE
Q 042011 31 ELMLSNNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLIAPNFQLNSLSLSSDYGDGFIFPKFLYHQHDLALVD 110 (361)
Q Consensus 31 ~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~ 110 (361)
.|+|.++.+++.-....+..+..|+.++++++.+++.... .++..+...+.+++++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~------------------------~i~~~l~~~~~l~~l~ 57 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAK------------------------ALASALRPQPSLKELC 57 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHH------------------------HHHHHHhhCCCceEEe
Confidence 4667777665332224456666777888877776532111 1223344455566666
Q ss_pred ecCCcccC------CcChHHHhcCCCCcEEEecCCcccCCCCCCcCCC---CCcCEEEccCCcCCcc----CChhhhccC
Q 042011 111 LSHIKMNG------EFPTWLLENNTKLETLFLVNDSLTGPFRLPIHSH---RWLEFLDISNNNFRCH----IPVEIGDIL 177 (361)
Q Consensus 111 l~~n~l~~------~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l---~~L~~L~l~~n~l~~~----~~~~~~~~l 177 (361)
++++.+.+ .++.. +..+++|++|++++|.+....+..+..+ ++|++|++++|++.+. +...+.. +
T Consensus 58 l~~~~~~~~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~-~ 135 (319)
T cd00116 58 LSLNETGRIPRGLQSLLQG-LTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKD-L 135 (319)
T ss_pred ccccccCCcchHHHHHHHH-HHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHh-C
Confidence 66655541 12222 4556777777777777764334333333 3488888888887632 2223333 4
Q ss_pred -CCccEEEecCCcccc----ccCccccCCCCCCEEeccCCcCccccchhhh---hCCCCCcEEEeecCCCCCc----ccc
Q 042011 178 -PSLKFFNISMNALDG----SIPSSFGNMNFLRVLDLSNNQLTGEIPEHLA---VGCVNLESLALSNNSLEGH----MFS 245 (361)
Q Consensus 178 -~~L~~L~L~~n~l~~----~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~---~~~~~L~~L~L~~n~l~~~----~~~ 245 (361)
++|+.|++++|.+++ .++..+..+++|++|++++|.+++.....+. ...++|++|++++|.+++. ...
T Consensus 136 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~ 215 (319)
T cd00116 136 PPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAE 215 (319)
T ss_pred CCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHH
Confidence 899999999999883 2344567788999999999999843222221 2457999999999998753 334
Q ss_pred cccCCCCCCEEeccCCcCCccchhhhhc-----CCCCCEEECcCCcccc----cCCCCCCCcCcceeeccccccccCC
Q 042011 246 RNFNLTNLEWLQLGGNRFVGEIPQSLSK-----CSSLEGLYLNNNSLSG----NVNVPSSPANTLFNLSQNSRRFTSS 314 (361)
Q Consensus 246 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~-----l~~L~~L~l~~N~l~~----~~~~~~~~~~~L~~l~l~~N~~~~~ 314 (361)
.+..+++|+.|++++|++++.....+.. .+.|++|++++|.+++ .+...+...++|+++++++|.++..
T Consensus 216 ~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~ 293 (319)
T cd00116 216 TLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEE 293 (319)
T ss_pred HhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHH
Confidence 5667899999999999998644433322 3799999999999973 2223455668999999999999864
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.74 E-value=2.1e-20 Score=143.95 Aligned_cols=186 Identities=27% Similarity=0.420 Sum_probs=148.5
Q ss_pred cCCCCcEEEecCCcccCCCCCCcCCCCCcCEEEccCCcCCccCChhhhccCCCccEEEecCCccccccCccccCCCCCCE
Q 042011 127 NNTKLETLFLVNDSLTGPFRLPIHSHRWLEFLDISNNNFRCHIPVEIGDILPSLKFFNISMNALDGSIPSSFGNMNFLRV 206 (361)
Q Consensus 127 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~ 206 (361)
.+..++.|.+++|+++ ++|..+..+.+|+.|++++|++. ++|..+.+ +++|+.|+++.|.+. ..|..|+.+|.|+.
T Consensus 31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~iss-l~klr~lnvgmnrl~-~lprgfgs~p~lev 106 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISS-LPKLRILNVGMNRLN-ILPRGFGSFPALEV 106 (264)
T ss_pred chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhh-chhhhheecchhhhh-cCccccCCCchhhh
Confidence 4556677788888887 46667788888888899999888 88888877 889999999988887 88888999999999
Q ss_pred EeccCCcCc-cccchhhhhCCCCCcEEEeecCCCCCcccccccCCCCCCEEeccCCcCCccchhhhhcCCCCCEEECcCC
Q 042011 207 LDLSNNQLT-GEIPEHLAVGCVNLESLALSNNSLEGHMFSRNFNLTNLEWLQLGGNRFVGEIPQSLSKCSSLEGLYLNNN 285 (361)
Q Consensus 207 L~l~~n~l~-~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N 285 (361)
|++.+|++. ..+|..+| .++.|+.|++++|.+.- .|...+.+++|+.|.++.|.+. ..|..++.++.|++|++.+|
T Consensus 107 ldltynnl~e~~lpgnff-~m~tlralyl~dndfe~-lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 107 LDLTYNNLNENSLPGNFF-YMTTLRALYLGDNDFEI-LPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGN 183 (264)
T ss_pred hhccccccccccCCcchh-HHHHHHHHHhcCCCccc-CChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccc
Confidence 999888875 35677777 68889999999998854 7888889999999999999888 68899999999999999999
Q ss_pred cccccCCCCCCCc---CcceeeccccccccCCcccccc
Q 042011 286 SLSGNVNVPSSPA---NTLFNLSQNSRRFTSSISHSHL 320 (361)
Q Consensus 286 ~l~~~~~~~~~~~---~~L~~l~l~~N~~~~~~~~~~~ 320 (361)
+++-..| .+..+ .+=+.+.+..|+|...+...+.
T Consensus 184 rl~vlpp-el~~l~l~~~k~v~r~E~NPwv~pIaeQf~ 220 (264)
T KOG0617|consen 184 RLTVLPP-ELANLDLVGNKQVMRMEENPWVNPIAEQFL 220 (264)
T ss_pred eeeecCh-hhhhhhhhhhHHHHhhhhCCCCChHHHHHH
Confidence 9985444 34333 2334567778888776655443
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.71 E-value=2.7e-19 Score=137.77 Aligned_cols=161 Identities=27% Similarity=0.402 Sum_probs=147.0
Q ss_pred CCCCCcCEEEccCCcCCccCChhhhccCCCccEEEecCCccccccCccccCCCCCCEEeccCCcCccccchhhhhCCCCC
Q 042011 150 HSHRWLEFLDISNNNFRCHIPVEIGDILPSLKFFNISMNALDGSIPSSFGNMNFLRVLDLSNNQLTGEIPEHLAVGCVNL 229 (361)
Q Consensus 150 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L 229 (361)
-.+..++.|.+++|+++ .+|..+.. +.+|+.|++++|.++ ..|..++.+++|+.|+++-|++. .+|..++ .++-|
T Consensus 30 f~~s~ITrLtLSHNKl~-~vppnia~-l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfg-s~p~l 104 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNKLT-VVPPNIAE-LKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFG-SFPAL 104 (264)
T ss_pred cchhhhhhhhcccCcee-ecCCcHHH-hhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccC-CCchh
Confidence 35677899999999999 89999988 899999999999998 88999999999999999999998 8999887 79999
Q ss_pred cEEEeecCCCCC-cccccccCCCCCCEEeccCCcCCccchhhhhcCCCCCEEECcCCcccccCCCCCCCcCcceeecccc
Q 042011 230 ESLALSNNSLEG-HMFSRNFNLTNLEWLQLGGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGNVNVPSSPANTLFNLSQNS 308 (361)
Q Consensus 230 ~~L~L~~n~l~~-~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~L~~l~l~~ 308 (361)
+.||+.+|++.+ ..|+.|..++.|+.|+++.|.+. .+|..++++++|+.|.+++|.+- ..|..+..+.+|++|.++|
T Consensus 105 evldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqg 182 (264)
T KOG0617|consen 105 EVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQG 182 (264)
T ss_pred hhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhccc
Confidence 999999999875 57888889999999999999998 88999999999999999999987 5788889999999999999
Q ss_pred ccccCCccc
Q 042011 309 RRFTSSISH 317 (361)
Q Consensus 309 N~~~~~~~~ 317 (361)
|+++-..|.
T Consensus 183 nrl~vlppe 191 (264)
T KOG0617|consen 183 NRLTVLPPE 191 (264)
T ss_pred ceeeecChh
Confidence 999865553
No 23
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.49 E-value=5.2e-16 Score=140.23 Aligned_cols=170 Identities=30% Similarity=0.428 Sum_probs=82.6
Q ss_pred cEEEecCCcccCCcChHHHhcCCCCcEEEecCCcccCCCCCCcCCCCCcCEEEccCCcCCccCChhhhccCCCccEEEec
Q 042011 107 ALVDLSHIKMNGEFPTWLLENNTKLETLFLVNDSLTGPFRLPIHSHRWLEFLDISNNNFRCHIPVEIGDILPSLKFFNIS 186 (361)
Q Consensus 107 ~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~ 186 (361)
...|++.|++. .+|.. ++.+-.|+.+.+..|.+. .+|.++.++..|+.++++.|+++ .+|..++. + -|+.|-++
T Consensus 78 ~~aDlsrNR~~-elp~~-~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~-l-pLkvli~s 151 (722)
T KOG0532|consen 78 VFADLSRNRFS-ELPEE-ACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCD-L-PLKVLIVS 151 (722)
T ss_pred hhhhccccccc-cCchH-HHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhc-C-cceeEEEe
Confidence 34455555554 44444 334444444455544444 24444555555555555555554 45555443 2 35555555
Q ss_pred CCccccccCccccCCCCCCEEeccCCcCccccchhhhhCCCCCcEEEeecCCCCCcccccccCCCCCCEEeccCCcCCcc
Q 042011 187 MNALDGSIPSSFGNMNFLRVLDLSNNQLTGEIPEHLAVGCVNLESLALSNNSLEGHMFSRNFNLTNLEWLQLGGNRFVGE 266 (361)
Q Consensus 187 ~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~ 266 (361)
+|.++ .+|..++..+.|..|+.+.|.+. .+|..++ .+.+|+.|.+..|++.. .|..+. .-.|..||++.|++. .
T Consensus 152 NNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~-~l~slr~l~vrRn~l~~-lp~El~-~LpLi~lDfScNkis-~ 225 (722)
T KOG0532|consen 152 NNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLG-YLTSLRDLNVRRNHLED-LPEELC-SLPLIRLDFSCNKIS-Y 225 (722)
T ss_pred cCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhh-hHHHHHHHHHhhhhhhh-CCHHHh-CCceeeeecccCcee-e
Confidence 55554 44444454455555555555554 4454444 44555555555555444 333333 223445555555554 4
Q ss_pred chhhhhcCCCCCEEECcCCccc
Q 042011 267 IPQSLSKCSSLEGLYLNNNSLS 288 (361)
Q Consensus 267 ~~~~~~~l~~L~~L~l~~N~l~ 288 (361)
+|-.|..+..|++|-|.+|.+.
T Consensus 226 iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 226 LPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred cchhhhhhhhheeeeeccCCCC
Confidence 4445555555555555555554
No 24
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.37 E-value=8.8e-13 Score=122.05 Aligned_cols=176 Identities=30% Similarity=0.422 Sum_probs=77.1
Q ss_pred CCCccEEEecCCcccCCcChHHHhcCC-CCcEEEecCCcccCCCCCCcCCCCCcCEEEccCCcCCccCChhhhccCCCcc
Q 042011 103 QHDLALVDLSHIKMNGEFPTWLLENNT-KLETLFLVNDSLTGPFRLPIHSHRWLEFLDISNNNFRCHIPVEIGDILPSLK 181 (361)
Q Consensus 103 l~~L~~L~l~~n~l~~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 181 (361)
.+.++.|++.+|.++ .++.. ..... +|+.|++++|++.. .+..+..++.|+.|++++|+++ .+|..... .+.|+
T Consensus 115 ~~~l~~L~l~~n~i~-~i~~~-~~~~~~nL~~L~l~~N~i~~-l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~-~~~L~ 189 (394)
T COG4886 115 LTNLTSLDLDNNNIT-DIPPL-IGLLKSNLKELDLSDNKIES-LPSPLRNLPNLKNLDLSFNDLS-DLPKLLSN-LSNLN 189 (394)
T ss_pred ccceeEEecCCcccc-cCccc-cccchhhcccccccccchhh-hhhhhhccccccccccCCchhh-hhhhhhhh-hhhhh
Confidence 344555555555554 33332 22221 45555555555442 2233444455555555555554 44433322 34455
Q ss_pred EEEecCCccccccCccccCCCCCCEEeccCCcCccccchhhhhCCCCCcEEEeecCCCCCcccccccCCCCCCEEeccCC
Q 042011 182 FFNISMNALDGSIPSSFGNMNFLRVLDLSNNQLTGEIPEHLAVGCVNLESLALSNNSLEGHMFSRNFNLTNLEWLQLGGN 261 (361)
Q Consensus 182 ~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n 261 (361)
.|++++|.+. .+|........|+++.+++|.+. ..+.... .+.++..+.+.+|++.. .+..+..++.++.|++++|
T Consensus 190 ~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~-~~~~l~~l~l~~n~~~~-~~~~~~~l~~l~~L~~s~n 265 (394)
T COG4886 190 NLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLS-NLKNLSGLELSNNKLED-LPESIGNLSNLETLDLSNN 265 (394)
T ss_pred heeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhh-hcccccccccCCceeee-ccchhccccccceeccccc
Confidence 5555555544 33333333334455555554332 2333332 34444444444444433 1333444444555555555
Q ss_pred cCCccchhhhhcCCCCCEEECcCCcccc
Q 042011 262 RFVGEIPQSLSKCSSLEGLYLNNNSLSG 289 (361)
Q Consensus 262 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 289 (361)
+++.. +. ++.+.+++.+++++|.+..
T Consensus 266 ~i~~i-~~-~~~~~~l~~L~~s~n~~~~ 291 (394)
T COG4886 266 QISSI-SS-LGSLTNLRELDLSGNSLSN 291 (394)
T ss_pred ccccc-cc-ccccCccCEEeccCccccc
Confidence 54422 11 4444455555555554443
No 25
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.34 E-value=3.3e-13 Score=113.41 Aligned_cols=132 Identities=26% Similarity=0.237 Sum_probs=100.9
Q ss_pred CCccEEEecCCccccccCccccCCCCCCEEeccCCcCccccchhhhhCCCCCcEEEeecCCCCCcccccccCCCCCCEEe
Q 042011 178 PSLKFFNISMNALDGSIPSSFGNMNFLRVLDLSNNQLTGEIPEHLAVGCVNLESLALSNNSLEGHMFSRNFNLTNLEWLQ 257 (361)
Q Consensus 178 ~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ 257 (361)
..|+++|+|+|.|+ .+.....-.|.++.|++++|.+. ++.. +. .+++|..||+++|.++. ..++-..+-+++.|.
T Consensus 284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~n-La-~L~~L~~LDLS~N~Ls~-~~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQN-LA-ELPQLQLLDLSGNLLAE-CVGWHLKLGNIKTLK 358 (490)
T ss_pred hhhhhccccccchh-hhhhhhhhccceeEEecccccee-eehh-hh-hcccceEeecccchhHh-hhhhHhhhcCEeeee
Confidence 46888888888887 66667777788888888888887 6655 32 58888888888888876 445555677888888
Q ss_pred ccCCcCCccchhhhhcCCCCCEEECcCCcccccC-CCCCCCcCcceeeccccccccCCcc
Q 042011 258 LGGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGNV-NVPSSPANTLFNLSQNSRRFTSSIS 316 (361)
Q Consensus 258 L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~-~~~~~~~~~L~~l~l~~N~~~~~~~ 316 (361)
+++|.|.+. ..+..+-+|..||+++|+|.... ...++++|.|+.+.+.+|++.+...
T Consensus 359 La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 359 LAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred hhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccch
Confidence 888888732 45677788888999999887532 2467888999999999998886543
No 26
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.34 E-value=1.5e-13 Score=117.58 Aligned_cols=173 Identities=24% Similarity=0.251 Sum_probs=87.4
Q ss_pred hhccCCCCeEeCcCCccccc----CCcccccCCCCCcEEEccCCCcccccccccccccCcccccEEeccCCCCCCCCCch
Q 042011 23 LVHLTSIEELMLSNNHFQIP----ISLEPLFNHSRLKIFYADNNELNAEITQSHSLIAPNFQLNSLSLSSDYGDGFIFPK 98 (361)
Q Consensus 23 ~~~l~~L~~L~Ls~n~l~~~----~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 98 (361)
...+..++.|+||+|.+... +. ..+.+.+.|+..++++- +++....-+ .+.|. .+..
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~-~~L~~~~~L~~v~~sd~-ftGR~~~Ei--------~e~L~---------~l~~ 86 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIA-KVLASKKELREVNLSDM-FTGRLKDEI--------PEALK---------MLSK 86 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHH-HHHhhcccceeeehHhh-hcCCcHHHH--------HHHHH---------HHHH
Confidence 44567788888888877411 11 23556667777777742 222111110 00000 1234
Q ss_pred hhcCCCCccEEEecCCcccCCcCh---HHHhcCCCCcEEEecCCcccCCC-------------CCCcCCCCCcCEEEccC
Q 042011 99 FLYHQHDLALVDLSHIKMNGEFPT---WLLENNTKLETLFLVNDSLTGPF-------------RLPIHSHRWLEFLDISN 162 (361)
Q Consensus 99 ~l~~l~~L~~L~l~~n~l~~~~~~---~~~~~~~~L~~L~l~~n~l~~~~-------------~~~~~~l~~L~~L~l~~ 162 (361)
.+..+++|++||||.|-+....+. .++..+..|++|++.+|.+...- ......-+.|+.+....
T Consensus 87 aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~r 166 (382)
T KOG1909|consen 87 ALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGR 166 (382)
T ss_pred HHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeec
Confidence 455677888888888877533332 33566778888888888765211 11122334455666655
Q ss_pred CcCCccCCh----hhhccCCCccEEEecCCcccc----ccCccccCCCCCCEEeccCCcCc
Q 042011 163 NNFRCHIPV----EIGDILPSLKFFNISMNALDG----SIPSSFGNMNFLRVLDLSNNQLT 215 (361)
Q Consensus 163 n~l~~~~~~----~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~~~~L~~L~l~~n~l~ 215 (361)
|++. ..+. ..++..+.|+.+.++.|.|.. .....|..+++|+.|++.+|.++
T Consensus 167 Nrle-n~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft 226 (382)
T KOG1909|consen 167 NRLE-NGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFT 226 (382)
T ss_pred cccc-cccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhh
Confidence 5554 2221 112223455555555555431 11223444555555555555444
No 27
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=5.1e-13 Score=117.52 Aligned_cols=209 Identities=21% Similarity=0.166 Sum_probs=126.3
Q ss_pred cccEEeccCCCCCCCCCc-hhhcCCCCccEEEecCCcccCCcC-hHHHhcCCCCcEEEecCCcccCCCC-CCcCCCCCcC
Q 042011 80 QLNSLSLSSDYGDGFIFP-KFLYHQHDLALVDLSHIKMNGEFP-TWLLENNTKLETLFLVNDSLTGPFR-LPIHSHRWLE 156 (361)
Q Consensus 80 ~L~~L~l~~~~~~~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~ 156 (361)
+|+++.| .+..+..... .....|+.++.||+|+|-+....+ ..+...+++|+.|+++.|++..... ..-..+++|+
T Consensus 122 kL~~IsL-dn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK 200 (505)
T KOG3207|consen 122 KLREISL-DNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLK 200 (505)
T ss_pred hhhheee-cCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhh
Confidence 6666666 6555543221 345667888888888877664322 2335677888888888887753211 1122456778
Q ss_pred EEEccCCcCCccCChhhhccCCCccEEEecCCccccccCccccCCCCCCEEeccCCcCccccc-hhhhhCCCCCcEEEee
Q 042011 157 FLDISNNNFRCHIPVEIGDILPSLKFFNISMNALDGSIPSSFGNMNFLRVLDLSNNQLTGEIP-EHLAVGCVNLESLALS 235 (361)
Q Consensus 157 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~-~~~~~~~~~L~~L~L~ 235 (361)
.|.++.|+++..--.+....+|+|+.|++..|..-........-+..|++|++++|.+- ..+ ......++.|+.|+++
T Consensus 201 ~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls 279 (505)
T KOG3207|consen 201 QLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNLS 279 (505)
T ss_pred eEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchhhhhcc
Confidence 88888887774433444455788888888877422122333344567778888888776 333 1122267778888888
Q ss_pred cCCCCCcccccc------cCCCCCCEEeccCCcCCccc-hhhhhcCCCCCEEECcCCccccc
Q 042011 236 NNSLEGHMFSRN------FNLTNLEWLQLGGNRFVGEI-PQSLSKCSSLEGLYLNNNSLSGN 290 (361)
Q Consensus 236 ~n~l~~~~~~~~------~~~~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~l~~N~l~~~ 290 (361)
.+.+.++..... ...++|+.|+++.|+|.+.- -..+..+++|+.+.+..|.++.+
T Consensus 280 ~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e 341 (505)
T KOG3207|consen 280 STGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKE 341 (505)
T ss_pred ccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccccc
Confidence 777765422222 35677778888777775321 12344456777777777777643
No 28
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=1.9e-13 Score=120.19 Aligned_cols=215 Identities=18% Similarity=0.099 Sum_probs=158.3
Q ss_pred hcCCCCccEEEecCCcccCCcCh-HHHhcCCCCcEEEecCCcccCC--CCCCcCCCCCcCEEEccCCcCCccCChhhhcc
Q 042011 100 LYHQHDLALVDLSHIKMNGEFPT-WLLENNTKLETLFLVNDSLTGP--FRLPIHSHRWLEFLDISNNNFRCHIPVEIGDI 176 (361)
Q Consensus 100 l~~l~~L~~L~l~~n~l~~~~~~-~~~~~~~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 176 (361)
-+++.+|+.+.+.++.+. ..+. .....++.++.|+++.|-+..- +..-...+|+|+.|+++.|++..-........
T Consensus 117 Qsn~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~ 195 (505)
T KOG3207|consen 117 QSNLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLL 195 (505)
T ss_pred hhhHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhh
Confidence 346889999999998876 3332 3478899999999999977642 23345678999999999999874333333344
Q ss_pred CCCccEEEecCCcccc-ccCccccCCCCCCEEeccCCcCccccchhhhhCCCCCcEEEeecCCCCCcc-cccccCCCCCC
Q 042011 177 LPSLKFFNISMNALDG-SIPSSFGNMNFLRVLDLSNNQLTGEIPEHLAVGCVNLESLALSNNSLEGHM-FSRNFNLTNLE 254 (361)
Q Consensus 177 l~~L~~L~L~~n~l~~-~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~~~~~L~ 254 (361)
+++|+.|.++.|.++. .+...+..+|+|+.|++.+|... .+...-...+..|++|+|++|++-... ....+.++.|+
T Consensus 196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~-~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~ 274 (505)
T KOG3207|consen 196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEII-LIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLN 274 (505)
T ss_pred hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhccccc-ceecchhhhhhHHhhccccCCcccccccccccccccchh
Confidence 7899999999999972 22334567899999999999532 122222235678999999999876532 24566889999
Q ss_pred EEeccCCcCCcc-chhh-----hhcCCCCCEEECcCCcccccC-CCCCCCcCcceeeccccccccCCcc
Q 042011 255 WLQLGGNRFVGE-IPQS-----LSKCSSLEGLYLNNNSLSGNV-NVPSSPANTLFNLSQNSRRFTSSIS 316 (361)
Q Consensus 255 ~L~L~~n~l~~~-~~~~-----~~~l~~L~~L~l~~N~l~~~~-~~~~~~~~~L~~l~l~~N~~~~~~~ 316 (361)
.|+++.+.+.+. .|++ ....++|+.|+++.|++.+.. -..+..+++|+.+.+..|+++..-.
T Consensus 275 ~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e~~ 343 (505)
T KOG3207|consen 275 QLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKETD 343 (505)
T ss_pred hhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccccccc
Confidence 999999998854 2332 345789999999999997522 2346778899999999999986554
No 29
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.32 E-value=2.5e-12 Score=103.08 Aligned_cols=125 Identities=29% Similarity=0.353 Sum_probs=41.6
Q ss_pred CCCcCEEEccCCcCCccCChhhhccCCCccEEEecCCccccccCccccCCCCCCEEeccCCcCccccchhhhhCCCCCcE
Q 042011 152 HRWLEFLDISNNNFRCHIPVEIGDILPSLKFFNISMNALDGSIPSSFGNMNFLRVLDLSNNQLTGEIPEHLAVGCVNLES 231 (361)
Q Consensus 152 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~ 231 (361)
..++++|++.+|.|+ .+. .+...+.+|+.|++++|.++ .+. .+..++.|++|++++|.++ .++..+...+++|++
T Consensus 18 ~~~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 18 PVKLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQE 92 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-TT--E
T ss_pred ccccccccccccccc-ccc-chhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCC-ccccchHHhCCcCCE
Confidence 345666777777765 442 33333566777777777776 332 3566677777777777776 565444334677777
Q ss_pred EEeecCCCCCc-ccccccCCCCCCEEeccCCcCCccc---hhhhhcCCCCCEEE
Q 042011 232 LALSNNSLEGH-MFSRNFNLTNLEWLQLGGNRFVGEI---PQSLSKCSSLEGLY 281 (361)
Q Consensus 232 L~L~~n~l~~~-~~~~~~~~~~L~~L~L~~n~l~~~~---~~~~~~l~~L~~L~ 281 (361)
|++++|+|... ....+..+++|+.|++.+|+++... ...+..+|+|+.||
T Consensus 93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD 146 (175)
T ss_dssp EE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred EECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence 77777777652 1234556677777777777766331 23455667777765
No 30
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.32 E-value=2.6e-12 Score=118.90 Aligned_cols=177 Identities=32% Similarity=0.465 Sum_probs=84.7
Q ss_pred cCCCCcEEEecCCcccCCCCCCcCCCC-CcCEEEccCCcCCccCChhhhccCCCccEEEecCCccccccCccccCCCCCC
Q 042011 127 NNTKLETLFLVNDSLTGPFRLPIHSHR-WLEFLDISNNNFRCHIPVEIGDILPSLKFFNISMNALDGSIPSSFGNMNFLR 205 (361)
Q Consensus 127 ~~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~ 205 (361)
..+.++.+++.+|.++. ++....... +|+.|++++|.+. .+|..+.. +++|+.|++++|.++ .++...+..+.|+
T Consensus 114 ~~~~l~~L~l~~n~i~~-i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~-l~~L~~L~l~~N~l~-~l~~~~~~~~~L~ 189 (394)
T COG4886 114 ELTNLTSLDLDNNNITD-IPPLIGLLKSNLKELDLSDNKIE-SLPSPLRN-LPNLKNLDLSFNDLS-DLPKLLSNLSNLN 189 (394)
T ss_pred cccceeEEecCCccccc-Cccccccchhhcccccccccchh-hhhhhhhc-cccccccccCCchhh-hhhhhhhhhhhhh
Confidence 33455555555555542 233333332 4555555555554 44433333 455555555555555 3443333445555
Q ss_pred EEeccCCcCccccchhhhhCCCCCcEEEeecCCCCCcccccccCCCCCCEEeccCCcCCccchhhhhcCCCCCEEECcCC
Q 042011 206 VLDLSNNQLTGEIPEHLAVGCVNLESLALSNNSLEGHMFSRNFNLTNLEWLQLGGNRFVGEIPQSLSKCSSLEGLYLNNN 285 (361)
Q Consensus 206 ~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N 285 (361)
.|++++|++. .+|.... ....|+++.+++|++.. .+..+..+..+..+.+.+|++. ..+..++.+++++.|++++|
T Consensus 190 ~L~ls~N~i~-~l~~~~~-~~~~L~~l~~~~N~~~~-~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n 265 (394)
T COG4886 190 NLDLSGNKIS-DLPPEIE-LLSALEELDLSNNSIIE-LLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNN 265 (394)
T ss_pred heeccCCccc-cCchhhh-hhhhhhhhhhcCCccee-cchhhhhcccccccccCCceee-eccchhccccccceeccccc
Confidence 5555555555 5554332 23335555555553222 3334444555555555555554 22344444555555555555
Q ss_pred cccccCCCCCCCcCcceeeccccccccC
Q 042011 286 SLSGNVNVPSSPANTLFNLSQNSRRFTS 313 (361)
Q Consensus 286 ~l~~~~~~~~~~~~~L~~l~l~~N~~~~ 313 (361)
+++.... +....+++.+++++|.++.
T Consensus 266 ~i~~i~~--~~~~~~l~~L~~s~n~~~~ 291 (394)
T COG4886 266 QISSISS--LGSLTNLRELDLSGNSLSN 291 (394)
T ss_pred ccccccc--ccccCccCEEeccCccccc
Confidence 5553222 4455555555555555543
No 31
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.30 E-value=1e-13 Score=125.59 Aligned_cols=193 Identities=25% Similarity=0.318 Sum_probs=137.5
Q ss_pred cccEEeccCCCCCCCCCchhhcCCCCccEEEecCCcccCCcChHHHhcCCCCcEEEecCCcccCCCCCCcCCCCCcCEEE
Q 042011 80 QLNSLSLSSDYGDGFIFPKFLYHQHDLALVDLSHIKMNGEFPTWLLENNTKLETLFLVNDSLTGPFRLPIHSHRWLEFLD 159 (361)
Q Consensus 80 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 159 (361)
--...++ +.|.+. .+|..+..+..|+.+.++.|.+- .+|.. .+++..|++++++.|+++ ..|..+..++ |+.|.
T Consensus 76 dt~~aDl-srNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~-i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli 149 (722)
T KOG0532|consen 76 DTVFADL-SRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEA-ICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLI 149 (722)
T ss_pred chhhhhc-cccccc-cCchHHHHHHHHHHHHHHhccce-ecchh-hhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEE
Confidence 3345666 666665 45666777777888888888876 67766 567778888888888877 3566666666 77888
Q ss_pred ccCCcCCccCChhhhccCCCccEEEecCCccccccCccccCCCCCCEEeccCCcCccccchhhhhCCCCCcEEEeecCCC
Q 042011 160 ISNNNFRCHIPVEIGDILPSLKFFNISMNALDGSIPSSFGNMNFLRVLDLSNNQLTGEIPEHLAVGCVNLESLALSNNSL 239 (361)
Q Consensus 160 l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l 239 (361)
+++|+++ .+|..+. ..+.|..||.+.|.+. .+|..++++.+|+.|.+..|.+. .+|+... .-.|..||++.|++
T Consensus 150 ~sNNkl~-~lp~~ig-~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~--~LpLi~lDfScNki 223 (722)
T KOG0532|consen 150 VSNNKLT-SLPEEIG-LLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELC--SLPLIRLDFSCNKI 223 (722)
T ss_pred EecCccc-cCCcccc-cchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHh--CCceeeeecccCce
Confidence 8888887 7777777 5778888888888877 66777777888888888888877 7777765 34577788888888
Q ss_pred CCcccccccCCCCCCEEeccCCcCCccchhhhhc---CCCCCEEECcCCc
Q 042011 240 EGHMFSRNFNLTNLEWLQLGGNRFVGEIPQSLSK---CSSLEGLYLNNNS 286 (361)
Q Consensus 240 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~---l~~L~~L~l~~N~ 286 (361)
.. +|..|..|+.|++|-|.+|.+. ..|..+.. ..--++|+..-++
T Consensus 224 s~-iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 224 SY-LPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred ee-cchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence 66 6777888888888888888887 44443322 2233556666553
No 32
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.25 E-value=1.1e-12 Score=112.29 Aligned_cols=214 Identities=23% Similarity=0.220 Sum_probs=151.2
Q ss_pred hhhcCCCCccEEEecCCcc---cCCcChH------HHhcCCCCcEEEecCCcccCCCCCC----cCCCCCcCEEEccCCc
Q 042011 98 KFLYHQHDLALVDLSHIKM---NGEFPTW------LLENNTKLETLFLVNDSLTGPFRLP----IHSHRWLEFLDISNNN 164 (361)
Q Consensus 98 ~~l~~l~~L~~L~l~~n~l---~~~~~~~------~~~~~~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~l~~n~ 164 (361)
..++..++|+..+++.-.. ...+|+. .+.++++|++++||.|-+....+.. +..+..|++|.+.+|.
T Consensus 52 ~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~G 131 (382)
T KOG1909|consen 52 KVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCG 131 (382)
T ss_pred HHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCC
Confidence 3455566777777765321 1123322 1556789999999999987544433 3456789999999998
Q ss_pred CCccCChhh-------------hccCCCccEEEecCCcccc----ccCccccCCCCCCEEeccCCcCcccc---chhhhh
Q 042011 165 FRCHIPVEI-------------GDILPSLKFFNISMNALDG----SIPSSFGNMNFLRVLDLSNNQLTGEI---PEHLAV 224 (361)
Q Consensus 165 l~~~~~~~~-------------~~~l~~L~~L~L~~n~l~~----~~~~~l~~~~~L~~L~l~~n~l~~~~---~~~~~~ 224 (361)
+. ...... ...-+.|+.+...+|++.. .+...|...+.|+.+.+..|.|...- -...+.
T Consensus 132 lg-~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~ 210 (382)
T KOG1909|consen 132 LG-PEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALE 210 (382)
T ss_pred CC-hhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHH
Confidence 86 222111 1114689999999999862 23446777899999999999986221 122334
Q ss_pred CCCCCcEEEeecCCCCC----cccccccCCCCCCEEeccCCcCCccchhhhh-----cCCCCCEEECcCCccccc----C
Q 042011 225 GCVNLESLALSNNSLEG----HMFSRNFNLTNLEWLQLGGNRFVGEIPQSLS-----KCSSLEGLYLNNNSLSGN----V 291 (361)
Q Consensus 225 ~~~~L~~L~L~~n~l~~----~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~-----~l~~L~~L~l~~N~l~~~----~ 291 (361)
.+++|+.|||..|-++. .....++.+++|+.+++++|.+......+|. ..|+|+.+.+.+|.|+.. +
T Consensus 211 ~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~l 290 (382)
T KOG1909|consen 211 HCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALAL 290 (382)
T ss_pred hCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHH
Confidence 79999999999998874 2455677889999999999999876544332 268999999999999752 2
Q ss_pred CCCCCCcCcceeecccccccc
Q 042011 292 NVPSSPANTLFNLSQNSRRFT 312 (361)
Q Consensus 292 ~~~~~~~~~L~~l~l~~N~~~ 312 (361)
...+...+.|..|++++|++.
T Consensus 291 a~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 291 AACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred HHHHhcchhhHHhcCCccccc
Confidence 223455789999999999993
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.25 E-value=5.1e-12 Score=101.32 Aligned_cols=139 Identities=23% Similarity=0.258 Sum_probs=43.4
Q ss_pred CCCccccCcCChhhhhccCCCCeEeCcCCcccccCCccccc-CCCCCcEEEccCCCcccccccccccccCcccccEEecc
Q 042011 9 VSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLF-NHSRLKIFYADNNELNAEITQSHSLIAPNFQLNSLSLS 87 (361)
Q Consensus 9 L~~n~i~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~ 87 (361)
|+.+.|. .++. +.+..++++|+|++|+|+ .+. .+. .+.+|+.|++++|.++..
T Consensus 4 lt~~~i~-~~~~--~~n~~~~~~L~L~~n~I~-~Ie--~L~~~l~~L~~L~Ls~N~I~~l-------------------- 57 (175)
T PF14580_consen 4 LTANMIE-QIAQ--YNNPVKLRELNLRGNQIS-TIE--NLGATLDKLEVLDLSNNQITKL-------------------- 57 (175)
T ss_dssp --------------------------------------S--TT-TT--EEE-TTS--S----------------------
T ss_pred ccccccc-cccc--cccccccccccccccccc-ccc--chhhhhcCCCEEECCCCCCccc--------------------
Confidence 4455555 5555 556667788888888877 443 343 467777777777776531
Q ss_pred CCCCCCCCCchhhcCCCCccEEEecCCcccCCcChHHHhcCCCCcEEEecCCcccCCC-CCCcCCCCCcCEEEccCCcCC
Q 042011 88 SDYGDGFIFPKFLYHQHDLALVDLSHIKMNGEFPTWLLENNTKLETLFLVNDSLTGPF-RLPIHSHRWLEFLDISNNNFR 166 (361)
Q Consensus 88 ~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~ 166 (361)
..+..++.|++|++++|.|+ .+...+...+++|++|++++|++.... -..+..+++|+.|++.+|++.
T Consensus 58 ----------~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 58 ----------EGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp ----------TT----TT--EEE--SS----S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred ----------cCccChhhhhhcccCCCCCC-ccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 12445677777777777776 555443446777777777777776421 234556777888888888776
Q ss_pred ccCCh---hhhccCCCccEEEe
Q 042011 167 CHIPV---EIGDILPSLKFFNI 185 (361)
Q Consensus 167 ~~~~~---~~~~~l~~L~~L~L 185 (361)
..+. .+...+|+|+.||-
T Consensus 127 -~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 127 -EKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp -GSTTHHHHHHHH-TT-SEETT
T ss_pred -chhhHHHHHHHHcChhheeCC
Confidence 3332 23334788888764
No 34
>PLN03150 hypothetical protein; Provisional
Probab=99.20 E-value=4e-11 Score=116.45 Aligned_cols=112 Identities=34% Similarity=0.398 Sum_probs=99.2
Q ss_pred CCEEeccCCcCccccchhhhhCCCCCcEEEeecCCCCCcccccccCCCCCCEEeccCCcCCccchhhhhcCCCCCEEECc
Q 042011 204 LRVLDLSNNQLTGEIPEHLAVGCVNLESLALSNNSLEGHMFSRNFNLTNLEWLQLGGNRFVGEIPQSLSKCSSLEGLYLN 283 (361)
Q Consensus 204 L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 283 (361)
++.|++++|.+.|.+|..+. .+++|+.|+|++|.+.+..|..+..+++|+.|++++|++++.+|+.++.+++|+.|+++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~-~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDIS-KLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEECCCCCccccCCHHHh-CCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 77899999999988998876 89999999999999998888889999999999999999999999999999999999999
Q ss_pred CCcccccCCCCCCCc-CcceeeccccccccCCcc
Q 042011 284 NNSLSGNVNVPSSPA-NTLFNLSQNSRRFTSSIS 316 (361)
Q Consensus 284 ~N~l~~~~~~~~~~~-~~L~~l~l~~N~~~~~~~ 316 (361)
+|++++.+|..+... .++..+++.+|+..|..|
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 999999999877653 466788999998777655
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.18 E-value=7e-12 Score=105.56 Aligned_cols=227 Identities=22% Similarity=0.188 Sum_probs=137.1
Q ss_pred hhccCCCCeEeCcCCc--------ccccCCcccccCCCCCcEEEccCCCcccccccccccccCcccccEEeccCCCCCCC
Q 042011 23 LVHLTSIEELMLSNNH--------FQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLIAPNFQLNSLSLSSDYGDGF 94 (361)
Q Consensus 23 ~~~l~~L~~L~Ls~n~--------l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 94 (361)
+.-+.+|..|.+++.. +...+| ..+..+.+|+.+.++.+.-..+.. + ....+.|+++.. .+..+..
T Consensus 178 ldf~~~l~~l~vs~~~~p~~~sni~~~~l~-f~l~~f~~l~~~~~s~~~~~~i~~--~--~~~kptl~t~~v-~~s~~~~ 251 (490)
T KOG1259|consen 178 LDFCTQLVALVVTPVKDPIDRSNIIPNRLS-FNLNAFRNLKTLKFSALSTENIVD--I--ELLKPTLQTICV-HNTTIQD 251 (490)
T ss_pred HHhhhheeEEEecCCCCCCccccccccccc-cchHHhhhhheeeeeccchhheec--e--eecCchhheeee-ecccccc
Confidence 3446677777777532 111222 124455677777777775332111 1 122236777777 5544432
Q ss_pred CCchhhcCCCCccEEEecCCc-ccCCcChHHHhcCCCCcEEEecCCcccCCCCCCcCCCCCcCEEEccCCcCCccCChhh
Q 042011 95 IFPKFLYHQHDLALVDLSHIK-MNGEFPTWLLENNTKLETLFLVNDSLTGPFRLPIHSHRWLEFLDISNNNFRCHIPVEI 173 (361)
Q Consensus 95 ~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 173 (361)
. | .+-....+.......-. .+|..... ...-..|+++|+++|.++ .+..+..-.|.++.|++++|++. .+.. +
T Consensus 252 ~-~-~l~pe~~~~D~~~~E~~t~~G~~~~~-~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~n-L 325 (490)
T KOG1259|consen 252 V-P-SLLPETILADPSGSEPSTSNGSALVS-ADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQN-L 325 (490)
T ss_pred c-c-cccchhhhcCccCCCCCccCCceEEe-cchHhhhhhccccccchh-hhhhhhhhccceeEEecccccee-eehh-h
Confidence 1 1 11111122111111111 11111111 111246788888888887 35566667788899999999887 5544 3
Q ss_pred hccCCCccEEEecCCccccccCccccCCCCCCEEeccCCcCccccchhhhhCCCCCcEEEeecCCCCCc-ccccccCCCC
Q 042011 174 GDILPSLKFFNISMNALDGSIPSSFGNMNFLRVLDLSNNQLTGEIPEHLAVGCVNLESLALSNNSLEGH-MFSRNFNLTN 252 (361)
Q Consensus 174 ~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~~~~~~~ 252 (361)
. .+++|+.||+|+|.++ .+...=..+.++++|.+++|.+. .+. .+. .+.+|..||+++|+|... ....++++|.
T Consensus 326 a-~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE-~LS-GL~-KLYSLvnLDl~~N~Ie~ldeV~~IG~LPC 400 (490)
T KOG1259|consen 326 A-ELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIE-TLS-GLR-KLYSLVNLDLSSNQIEELDEVNHIGNLPC 400 (490)
T ss_pred h-hcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHh-hhh-hhH-hhhhheeccccccchhhHHHhcccccccH
Confidence 3 3789999999999887 45555556778889999999887 443 333 677889999999988763 2345778999
Q ss_pred CCEEeccCCcCCcc
Q 042011 253 LEWLQLGGNRFVGE 266 (361)
Q Consensus 253 L~~L~L~~n~l~~~ 266 (361)
|+++.+.+|++.+.
T Consensus 401 LE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 401 LETLRLTGNPLAGS 414 (490)
T ss_pred HHHHhhcCCCcccc
Confidence 99999999998854
No 36
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.15 E-value=2e-11 Score=80.76 Aligned_cols=61 Identities=34% Similarity=0.496 Sum_probs=56.1
Q ss_pred CCCCeEeCCCccccCcCChhhhhccCCCCeEeCcCCcccccCCcccccCCCCCcEEEccCCCc
Q 042011 2 TSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFYADNNEL 64 (361)
Q Consensus 2 ~~L~~L~L~~n~i~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~~ 64 (361)
|+|++|++++|+++ .+|...|.++++|++|++++|+++ .++..+|.++++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~-~i~~~~f~~l~~L~~L~l~~N~l~-~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLT-EIPPDSFSNLPNLETLDLSNNNLT-SIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTES-EECTTTTTTGTTESEEEETSSSES-EEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCC-ccCHHHHcCCCCCCEeEccCCccC-ccCHHHHcCCCCCCEEeCcCCcC
Confidence 68999999999998 889879999999999999999998 67768999999999999999975
No 37
>PLN03150 hypothetical protein; Provisional
Probab=99.10 E-value=3.1e-10 Score=110.28 Aligned_cols=113 Identities=27% Similarity=0.424 Sum_probs=101.0
Q ss_pred CccEEEecCCccccccCccccCCCCCCEEeccCCcCccccchhhhhCCCCCcEEEeecCCCCCcccccccCCCCCCEEec
Q 042011 179 SLKFFNISMNALDGSIPSSFGNMNFLRVLDLSNNQLTGEIPEHLAVGCVNLESLALSNNSLEGHMFSRNFNLTNLEWLQL 258 (361)
Q Consensus 179 ~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L 258 (361)
.++.|+|++|.+.+.+|..+..+++|+.|++++|.+.|.+|..+. .+++|+.|++++|++.+..|..++.+++|+.|++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~-~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLG-SITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHh-CCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence 378899999999999999999999999999999999989998876 8999999999999999999999999999999999
Q ss_pred cCCcCCccchhhhhcC-CCCCEEECcCCcccccCC
Q 042011 259 GGNRFVGEIPQSLSKC-SSLEGLYLNNNSLSGNVN 292 (361)
Q Consensus 259 ~~n~l~~~~~~~~~~l-~~L~~L~l~~N~l~~~~~ 292 (361)
++|++++.+|..+... .++..+++.+|......|
T Consensus 498 s~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 498 NGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred cCCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 9999999999988764 467889999987554333
No 38
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=99.09 E-value=7.5e-12 Score=116.22 Aligned_cols=130 Identities=23% Similarity=0.151 Sum_probs=61.6
Q ss_pred hccCCCCeEeCcCCcccccCCcccccCCCCCcEEEccCCCcccccccccccccCcccccEEeccCCCCCCCCCchhhcCC
Q 042011 24 VHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLIAPNFQLNSLSLSSDYGDGFIFPKFLYHQ 103 (361)
Q Consensus 24 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l 103 (361)
..+..++.+++..|.+. .+. ..+..+.+|+.+++.+|.+...... ...+.+|++|++ +.|.++... .+..+
T Consensus 69 ~~l~~l~~l~l~~n~i~-~~~-~~l~~~~~l~~l~l~~n~i~~i~~~----l~~~~~L~~L~l-s~N~I~~i~--~l~~l 139 (414)
T KOG0531|consen 69 ESLTSLKELNLRQNLIA-KIL-NHLSKLKSLEALDLYDNKIEKIENL----LSSLVNLQVLDL-SFNKITKLE--GLSTL 139 (414)
T ss_pred HHhHhHHhhccchhhhh-hhh-cccccccceeeeeccccchhhcccc----hhhhhcchheec-ccccccccc--chhhc
Confidence 35566666667777665 322 2356667777777777766542210 122234444444 444443321 23334
Q ss_pred CCccEEEecCCcccCCcChHHHhcCCCCcEEEecCCcccCCCC-CCcCCCCCcCEEEccCCcCC
Q 042011 104 HDLALVDLSHIKMNGEFPTWLLENNTKLETLFLVNDSLTGPFR-LPIHSHRWLEFLDISNNNFR 166 (361)
Q Consensus 104 ~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~ 166 (361)
+.|+.|++++|.+. .+.. +..+..|+.+++++|.+....+ . ...+.+++.+++.+|.+.
T Consensus 140 ~~L~~L~l~~N~i~-~~~~--~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 140 TLLKELNLSGNLIS-DISG--LESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIR 199 (414)
T ss_pred cchhhheeccCcch-hccC--CccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchh
Confidence 44555555555554 2222 2334445555555554443222 1 233444445555555443
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.01 E-value=2.5e-10 Score=75.44 Aligned_cols=59 Identities=32% Similarity=0.319 Sum_probs=30.5
Q ss_pred CCCEEeccCCcCCccchhhhhcCCCCCEEECcCCcccccCCCCCCCcCcceeecccccc
Q 042011 252 NLEWLQLGGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGNVNVPSSPANTLFNLSQNSRR 310 (361)
Q Consensus 252 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~L~~l~l~~N~ 310 (361)
+|+.|++++|+++...+.+|.++++|++|++++|+++...+.+|..+++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 44555555555554444455555555555555555554444555555555555555554
No 40
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.98 E-value=9.2e-11 Score=108.98 Aligned_cols=243 Identities=24% Similarity=0.211 Sum_probs=168.1
Q ss_pred CCCCeEeCCCccccCcCChhhhhccCCCCeEeCcCCcccccCCcccccCCCCCcEEEccCCCcccccccccccccCcccc
Q 042011 2 TSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLIAPNFQL 81 (361)
Q Consensus 2 ~~L~~L~L~~n~i~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L 81 (361)
..++.+++..|.|. .+.. .+..+++|+.+++.+|+|. .+. ..+..+++|++|++++|.|+.... +..+..|
T Consensus 72 ~~l~~l~l~~n~i~-~~~~-~l~~~~~l~~l~l~~n~i~-~i~-~~l~~~~~L~~L~ls~N~I~~i~~-----l~~l~~L 142 (414)
T KOG0531|consen 72 TSLKELNLRQNLIA-KILN-HLSKLKSLEALDLYDNKIE-KIE-NLLSSLVNLQVLDLSFNKITKLEG-----LSTLTLL 142 (414)
T ss_pred HhHHhhccchhhhh-hhhc-ccccccceeeeeccccchh-hcc-cchhhhhcchheeccccccccccc-----hhhccch
Confidence 34566778888887 4333 4788899999999999998 444 127788999999999999876432 3445568
Q ss_pred cEEeccCCCCCCCCCchhhcCCCCccEEEecCCcccCCcCh-HHHhcCCCCcEEEecCCcccCCCCCCcCCCCCcCEEEc
Q 042011 82 NSLSLSSDYGDGFIFPKFLYHQHDLALVDLSHIKMNGEFPT-WLLENNTKLETLFLVNDSLTGPFRLPIHSHRWLEFLDI 160 (361)
Q Consensus 82 ~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 160 (361)
+.|++ .+|.++.. ..+..++.|+.+++++|.+. .+.. . ...+.+++.+++++|.+.. ...+..+..+..+++
T Consensus 143 ~~L~l-~~N~i~~~--~~~~~l~~L~~l~l~~n~i~-~ie~~~-~~~~~~l~~l~l~~n~i~~--i~~~~~~~~l~~~~l 215 (414)
T KOG0531|consen 143 KELNL-SGNLISDI--SGLESLKSLKLLDLSYNRIV-DIENDE-LSELISLEELDLGGNSIRE--IEGLDLLKKLVLLSL 215 (414)
T ss_pred hhhee-ccCcchhc--cCCccchhhhcccCCcchhh-hhhhhh-hhhccchHHHhccCCchhc--ccchHHHHHHHHhhc
Confidence 99999 88888754 44566889999999999987 4443 2 3678899999999998864 333444455556688
Q ss_pred cCCcCCccCChhhhccCCC--ccEEEecCCccccccCccccCCCCCCEEeccCCcCccccchhhhhCCCCCcEEEeecCC
Q 042011 161 SNNNFRCHIPVEIGDILPS--LKFFNISMNALDGSIPSSFGNMNFLRVLDLSNNQLTGEIPEHLAVGCVNLESLALSNNS 238 (361)
Q Consensus 161 ~~n~l~~~~~~~~~~~l~~--L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~ 238 (361)
..|.++ .+.... . ++. |+.+++++|.+. ..+..+..+..+..+++..|.+. ..... ...+.+..+....+.
T Consensus 216 ~~n~i~-~~~~l~-~-~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~-~~~~~--~~~~~~~~~~~~~~~ 288 (414)
T KOG0531|consen 216 LDNKIS-KLEGLN-E-LVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRIS-NLEGL--ERLPKLSELWLNDNK 288 (414)
T ss_pred ccccce-eccCcc-c-chhHHHHHHhcccCccc-cccccccccccccccchhhcccc-ccccc--cccchHHHhccCcch
Confidence 888887 432211 1 233 889999999887 44466777888889999988887 33221 135556666677776
Q ss_pred CCCc---ccc-cccCCCCCCEEeccCCcCCccc
Q 042011 239 LEGH---MFS-RNFNLTNLEWLQLGGNRFVGEI 267 (361)
Q Consensus 239 l~~~---~~~-~~~~~~~L~~L~L~~n~l~~~~ 267 (361)
+... ... .....+.++...+..|.+....
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (414)
T KOG0531|consen 289 LALSEAISQEYITSAAPTLVTLTLELNPIRKIS 321 (414)
T ss_pred hcchhhhhccccccccccccccccccCcccccc
Confidence 5521 111 1445677888888888776543
No 41
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.83 E-value=3.4e-09 Score=105.63 Aligned_cols=125 Identities=22% Similarity=0.234 Sum_probs=67.7
Q ss_pred CeEeCCCccccCcCChhhhhccCCCCeEeCcCCc--ccccCCcccccCCCCCcEEEccCCCcccccccccccccCccccc
Q 042011 5 RILDVSSNQLTGSISSSPLVHLTSIEELMLSNNH--FQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLIAPNFQLN 82 (361)
Q Consensus 5 ~~L~L~~n~i~~~i~~~~~~~l~~L~~L~Ls~n~--l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~ 82 (361)
+...+-+|.+. .++. -..+++|++|-+.+|. +. .++.+.|..++.|++|||++|.--+..|.. ...+-+|+
T Consensus 526 rr~s~~~~~~~-~~~~--~~~~~~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l~~LP~~---I~~Li~Lr 598 (889)
T KOG4658|consen 526 RRMSLMNNKIE-HIAG--SSENPKLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSLSKLPSS---IGELVHLR 598 (889)
T ss_pred eEEEEeccchh-hccC--CCCCCccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCccCcCChH---Hhhhhhhh
Confidence 44445555554 4443 2234456666666664 33 444344666666777777665543344443 23333666
Q ss_pred EEeccCCCCCCCCCchhhcCCCCccEEEecCCcccCCcChHHHhcCCCCcEEEecCC
Q 042011 83 SLSLSSDYGDGFIFPKFLYHQHDLALVDLSHIKMNGEFPTWLLENNTKLETLFLVND 139 (361)
Q Consensus 83 ~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n 139 (361)
+|++ ....+. ..|..+..++.|.+|++..+.....++ .....+++|++|.+...
T Consensus 599 yL~L-~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~-~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 599 YLDL-SDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIP-GILLELQSLRVLRLPRS 652 (889)
T ss_pred cccc-cCCCcc-ccchHHHHHHhhheecccccccccccc-chhhhcccccEEEeecc
Confidence 6666 655555 456666666666666666655432332 22455666666666543
No 42
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.82 E-value=1.4e-10 Score=108.41 Aligned_cols=130 Identities=25% Similarity=0.240 Sum_probs=90.4
Q ss_pred CccEEEecCCccccccCccccCCCCCCEEeccCCcCccccchhhhhCCCCCcEEEeecCCCCCcccccccCCCCCCEEec
Q 042011 179 SLKFFNISMNALDGSIPSSFGNMNFLRVLDLSNNQLTGEIPEHLAVGCVNLESLALSNNSLEGHMFSRNFNLTNLEWLQL 258 (361)
Q Consensus 179 ~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L 258 (361)
.|...+.+.|.+. .+...+.-++.++.|++++|++. .+. .+. .++.|++||+++|++.........++. |..|.+
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~-~v~-~Lr-~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~l 239 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFT-KVD-NLR-RLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNL 239 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhh-hhH-HHH-hcccccccccccchhccccccchhhhh-heeeee
Confidence 5667777777776 55666777788888888888887 444 333 688888888888888764333333444 888888
Q ss_pred cCCcCCccchhhhhcCCCCCEEECcCCcccccCC-CCCCCcCcceeeccccccccCCc
Q 042011 259 GGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGNVN-VPSSPANTLFNLSQNSRRFTSSI 315 (361)
Q Consensus 259 ~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~-~~~~~~~~L~~l~l~~N~~~~~~ 315 (361)
++|.++.. ..+.++.+|+.||++.|-+.+-.. ..+..+..|..|.|.||++.|..
T Consensus 240 rnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p 295 (1096)
T KOG1859|consen 240 RNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAP 295 (1096)
T ss_pred cccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCH
Confidence 88887733 446777888888888887765221 23456677888888888887643
No 43
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.78 E-value=7.6e-09 Score=103.19 Aligned_cols=269 Identities=20% Similarity=0.152 Sum_probs=153.9
Q ss_pred CCCCeEeCCCcc--ccCcCChhhhhccCCCCeEeCcCCcccccCCcccccCCCCCcEEEccCCCcccccccccccccCcc
Q 042011 2 TSLRILDVSSNQ--LTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLIAPNF 79 (361)
Q Consensus 2 ~~L~~L~L~~n~--i~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~ 79 (361)
+.|++|-+..|. +. .++...|..++.|+.|||++|.--+.+| ..+..+-+||+|+++++.+.. .|.. +..+.
T Consensus 545 ~~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l~~LP-~~I~~Li~LryL~L~~t~I~~-LP~~---l~~Lk 618 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSLSKLP-SSIGELVHLRYLDLSDTGISH-LPSG---LGNLK 618 (889)
T ss_pred CccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCccCcCC-hHHhhhhhhhcccccCCCccc-cchH---HHHHH
Confidence 568888888886 55 7777678999999999999886555788 688999999999999999873 3333 56666
Q ss_pred cccEEeccCCCCCCCCCchhhcCCCCccEEEecCCccc--CCcChHHHhcCCCCcEEEecCCcccCCCCCCcCCCCCcC-
Q 042011 80 QLNSLSLSSDYGDGFIFPKFLYHQHDLALVDLSHIKMN--GEFPTWLLENNTKLETLFLVNDSLTGPFRLPIHSHRWLE- 156 (361)
Q Consensus 80 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~--~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~- 156 (361)
.|.+|++ .........+.....+++|++|.+..-... ...-.. +..+..|+.+....... ..-..+..+..|.
T Consensus 619 ~L~~Lnl-~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~e-l~~Le~L~~ls~~~~s~--~~~e~l~~~~~L~~ 694 (889)
T KOG4658|consen 619 KLIYLNL-EVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKE-LENLEHLENLSITISSV--LLLEDLLGMTRLRS 694 (889)
T ss_pred hhheecc-ccccccccccchhhhcccccEEEeeccccccchhhHHh-hhcccchhhheeecchh--HhHhhhhhhHHHHH
Confidence 9999999 655544445667777999999998775422 111111 34455555555533322 0111122222222
Q ss_pred ---EEEccCCcCCccCChhhhccCCCccEEEecCCccccccCcccc-----C-CCCCCEEeccCCcCccccchhhhhCCC
Q 042011 157 ---FLDISNNNFRCHIPVEIGDILPSLKFFNISMNALDGSIPSSFG-----N-MNFLRVLDLSNNQLTGEIPEHLAVGCV 227 (361)
Q Consensus 157 ---~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~-----~-~~~L~~L~l~~n~l~~~~~~~~~~~~~ 227 (361)
.+.+.++... ..+..... +.+|+.|.+.++.+......... . ++++..+...++..-....... ..+
T Consensus 695 ~~~~l~~~~~~~~-~~~~~~~~-l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~--f~~ 770 (889)
T KOG4658|consen 695 LLQSLSIEGCSKR-TLISSLGS-LGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLL--FAP 770 (889)
T ss_pred HhHhhhhcccccc-eeeccccc-ccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhh--ccC
Confidence 2332233322 23333333 67888888888777522211111 1 2233333333332221221222 367
Q ss_pred CCcEEEeecCCCCCcccccccCCCCCCEEeccCCcCCcc-chhhhhcCCCCCEEECcC
Q 042011 228 NLESLALSNNSLEGHMFSRNFNLTNLEWLQLGGNRFVGE-IPQSLSKCSSLEGLYLNN 284 (361)
Q Consensus 228 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~l~~ 284 (361)
+|+.|.+..++..+.+.+....+..++.+.+..+.+.+. .-...++++++..+.+..
T Consensus 771 ~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~ 828 (889)
T KOG4658|consen 771 HLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLSF 828 (889)
T ss_pred cccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEecccCc
Confidence 788888877766555555555555555555555555543 233344444444444443
No 44
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=2.1e-10 Score=96.59 Aligned_cols=176 Identities=20% Similarity=0.123 Sum_probs=89.5
Q ss_pred CCcEEEecCCcccC-CCCCCcCCCCCcCEEEccCCcCCccCChhhhccCCCccEEEecCCc-ccc-ccCccccCCCCCCE
Q 042011 130 KLETLFLVNDSLTG-PFRLPIHSHRWLEFLDISNNNFRCHIPVEIGDILPSLKFFNISMNA-LDG-SIPSSFGNMNFLRV 206 (361)
Q Consensus 130 ~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~-l~~-~~~~~l~~~~~L~~ 206 (361)
.++++|++...++. ..-..+..+.+|+.|.+.++++.+.+...+.. -.+|+.++++++. ++. ...-.+..+..|..
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAk-N~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAK-NSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhc-cccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 45666666555442 11122344455666666666665555444444 3556666666543 221 11123455666666
Q ss_pred EeccCCcCccccch-hhhhCCCCCcEEEeecCCCC---CcccccccCCCCCCEEeccCC-cCCccchhhhhcCCCCCEEE
Q 042011 207 LDLSNNQLTGEIPE-HLAVGCVNLESLALSNNSLE---GHMFSRNFNLTNLEWLQLGGN-RFVGEIPQSLSKCSSLEGLY 281 (361)
Q Consensus 207 L~l~~n~l~~~~~~-~~~~~~~~L~~L~L~~n~l~---~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~ 281 (361)
|++++|.+..+... .+..--++|+.|+++++.-. .....-...+++|.+|||+.| .++.....+|.+++-|++|.
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS 344 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS 344 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence 66666655422211 11112345666666665311 112222345667777777665 34433445566667777777
Q ss_pred CcCCcccccCCCC---CCCcCcceeecccc
Q 042011 282 LNNNSLSGNVNVP---SSPANTLFNLSQNS 308 (361)
Q Consensus 282 l~~N~l~~~~~~~---~~~~~~L~~l~l~~ 308 (361)
++.|.. .+|+. +...++|.+|++.|
T Consensus 345 lsRCY~--i~p~~~~~l~s~psl~yLdv~g 372 (419)
T KOG2120|consen 345 LSRCYD--IIPETLLELNSKPSLVYLDVFG 372 (419)
T ss_pred hhhhcC--CChHHeeeeccCcceEEEEecc
Confidence 776643 34443 35556777776665
No 45
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.73 E-value=4.7e-10 Score=83.81 Aligned_cols=133 Identities=17% Similarity=0.203 Sum_probs=103.4
Q ss_pred CccEEEecCCccccccCcc---ccCCCCCCEEeccCCcCccccchhhhhCCCCCcEEEeecCCCCCcccccccCCCCCCE
Q 042011 179 SLKFFNISMNALDGSIPSS---FGNMNFLRVLDLSNNQLTGEIPEHLAVGCVNLESLALSNNSLEGHMFSRNFNLTNLEW 255 (361)
Q Consensus 179 ~L~~L~L~~n~l~~~~~~~---l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~ 255 (361)
.+..++|+.|.+. .+++. +.....|+..++++|.+. ..|..+....+..+.+++++|.+.+ .|..+..++.|+.
T Consensus 28 E~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neisd-vPeE~Aam~aLr~ 104 (177)
T KOG4579|consen 28 ELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEISD-VPEELAAMPALRS 104 (177)
T ss_pred Hhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhhh-chHHHhhhHHhhh
Confidence 4567788888775 44443 344556777899999998 8888887778899999999999988 5667999999999
Q ss_pred EeccCCcCCccchhhhhcCCCCCEEECcCCcccccCCCCCCCcCcceeeccccccccCCcc
Q 042011 256 LQLGGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGNVNVPSSPANTLFNLSQNSRRFTSSIS 316 (361)
Q Consensus 256 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~~ 316 (361)
|+++.|++. ..|..+..+.++-.||..+|++. ++|..+......-...+.++++.+.++
T Consensus 105 lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~ 163 (177)
T KOG4579|consen 105 LNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNEPLGDETK 163 (177)
T ss_pred cccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCCcccccCc
Confidence 999999998 67888888999999999999987 455555444444555667788887665
No 46
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=2.4e-10 Score=96.32 Aligned_cols=203 Identities=21% Similarity=0.107 Sum_probs=133.4
Q ss_pred CCCeEeCcCCcccccCCcccccCCCCCcEEEccCCCcccccccccccccCcccccEEeccCCCCCCCCC-chhhcCCCCc
Q 042011 28 SIEELMLSNNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLIAPNFQLNSLSLSSDYGDGFIF-PKFLYHQHDL 106 (361)
Q Consensus 28 ~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~l~~l~~L 106 (361)
.||++|||+..|+-+--...+..|.+|+.|.+.++++.+.+... +....+|+.++++..++++... .-.++.|+.|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~---iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L 262 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNT---IAKNSNLVRLNLSMCSGFTENALQLLLSSCSRL 262 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHH---HhccccceeeccccccccchhHHHHHHHhhhhH
Confidence 58888888877762222234677888888888888887655443 4556688888887777776543 2346789999
Q ss_pred cEEEecCCcccCCcCh-HHHhcCCCCcEEEecCCccc---CCCCCCcCCCCCcCEEEccCCc-CCccCChhhhccCCCcc
Q 042011 107 ALVDLSHIKMNGEFPT-WLLENNTKLETLFLVNDSLT---GPFRLPIHSHRWLEFLDISNNN-FRCHIPVEIGDILPSLK 181 (361)
Q Consensus 107 ~~L~l~~n~l~~~~~~-~~~~~~~~L~~L~l~~n~l~---~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~ 181 (361)
+.|++++|.+....-. .+-.--++|+.|+++++.-. ..+..-...++++.+||++.+. ++...-..++. ++.|+
T Consensus 263 ~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~k-f~~L~ 341 (419)
T KOG2120|consen 263 DELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFK-FNYLQ 341 (419)
T ss_pred hhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHh-cchhe
Confidence 9999999987643322 22233468889999886421 1122223577899999999864 55333445555 89999
Q ss_pred EEEecCCccccccCc---cccCCCCCCEEeccCCcCccccchhhhhCCCCCcEEEeecC
Q 042011 182 FFNISMNALDGSIPS---SFGNMNFLRVLDLSNNQLTGEIPEHLAVGCVNLESLALSNN 237 (361)
Q Consensus 182 ~L~L~~n~l~~~~~~---~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n 237 (361)
+|.++.|.. .+|. .+...|+|.+|++-++--.+.. +.+...+++|+.-.-..|
T Consensus 342 ~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~vsdt~m-el~~e~~~~lkin~q~~~ 397 (419)
T KOG2120|consen 342 HLSLSRCYD--IIPETLLELNSKPSLVYLDVFGCVSDTTM-ELLKEMLSHLKINCQHFN 397 (419)
T ss_pred eeehhhhcC--CChHHeeeeccCcceEEEEeccccCchHH-HHHHHhCccccccceeee
Confidence 999999863 3444 4567899999999876544222 233335666665443333
No 47
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.66 E-value=2.8e-09 Score=99.95 Aligned_cols=210 Identities=25% Similarity=0.298 Sum_probs=137.9
Q ss_pred cCCCCcEEEecCCcccCCC-CCCcCCCCCcCEEEccCCcCCccCChhhhccCCCccEEEecCCccc----------cccC
Q 042011 127 NNTKLETLFLVNDSLTGPF-RLPIHSHRWLEFLDISNNNFRCHIPVEIGDILPSLKFFNISMNALD----------GSIP 195 (361)
Q Consensus 127 ~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~----------~~~~ 195 (361)
-+++++.+.+-.-.-.+.. |..+..+.+|+.|.+.++.+. . ...+......|++|- ..|.++ +.+.
T Consensus 82 ~lqkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~-~-~~GL~~lr~qLe~LI-C~~Sl~Al~~v~ascggd~~ 158 (1096)
T KOG1859|consen 82 FLQKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLS-T-AKGLQELRHQLEKLI-CHNSLDALRHVFASCGGDIS 158 (1096)
T ss_pred HHhhheeeeecccCCCCCCCCceeccccceeeEEecCcchh-h-hhhhHHHHHhhhhhh-hhccHHHHHHHHHHhccccc
Confidence 3455555555443322222 556667788999999999886 3 122222123455553 233332 1111
Q ss_pred ccccCCCCCCEEeccCCcCccccchhhhhCCCCCcEEEeecCCCCCcccccccCCCCCCEEeccCCcCCccchh-hhhcC
Q 042011 196 SSFGNMNFLRVLDLSNNQLTGEIPEHLAVGCVNLESLALSNNSLEGHMFSRNFNLTNLEWLQLGGNRFVGEIPQ-SLSKC 274 (361)
Q Consensus 196 ~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~-~~~~l 274 (361)
..+ ....|.+.+.+.|.+. .++..+. -++.++.|+|++|+++.. ..+..+++|++|||++|++. .+|. ...++
T Consensus 159 ns~-~Wn~L~~a~fsyN~L~-~mD~SLq-ll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc 232 (1096)
T KOG1859|consen 159 NSP-VWNKLATASFSYNRLV-LMDESLQ-LLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGC 232 (1096)
T ss_pred cch-hhhhHhhhhcchhhHH-hHHHHHH-HHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhh
Confidence 111 1235788889999998 7777765 688999999999999874 37889999999999999998 4442 23334
Q ss_pred CCCCEEECcCCcccccCCCCCCCcCcceeeccccccccCCcccccccccccchhhhHHHhhccchHHHH-----HHHHHh
Q 042011 275 SSLEGLYLNNNSLSGNVNVPSSPANTLFNLSQNSRRFTSSISHSHLLNLHGICKEYAKEFARNMPRICE-----EYAAYL 349 (361)
Q Consensus 275 ~~L~~L~l~~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~-----~~~~~~ 349 (361)
+|+.|.+++|.++..- .+.++.+|..||++.|-+.+.--...+..+.. ...-+-+++|-+|. +-++|+
T Consensus 233 -~L~~L~lrnN~l~tL~--gie~LksL~~LDlsyNll~~hseL~pLwsLs~----L~~L~LeGNPl~c~p~hRaataqYl 305 (1096)
T KOG1859|consen 233 -KLQLLNLRNNALTTLR--GIENLKSLYGLDLSYNLLSEHSELEPLWSLSS----LIVLWLEGNPLCCAPWHRAATAQYL 305 (1096)
T ss_pred -hheeeeecccHHHhhh--hHHhhhhhhccchhHhhhhcchhhhHHHHHHH----HHHHhhcCCccccCHHHHHHHHhHh
Confidence 4999999999998643 57889999999999999987544333333322 23445567777673 456777
Q ss_pred hcc
Q 042011 350 NST 352 (361)
Q Consensus 350 ~~~ 352 (361)
...
T Consensus 306 ~~~ 308 (1096)
T KOG1859|consen 306 HKN 308 (1096)
T ss_pred ccc
Confidence 643
No 48
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.60 E-value=4.5e-09 Score=87.65 Aligned_cols=213 Identities=20% Similarity=0.194 Sum_probs=113.2
Q ss_pred cCCCCeEeCcCCcccccCCc---ccccCCCCCcEEEccCCCcc---cccc----cccccccCcccccEEeccCCCCCCCC
Q 042011 26 LTSIEELMLSNNHFQIPISL---EPLFNHSRLKIFYADNNELN---AEIT----QSHSLIAPNFQLNSLSLSSDYGDGFI 95 (361)
Q Consensus 26 l~~L~~L~Ls~n~l~~~~~~---~~~~~l~~L~~L~l~~n~~~---~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~ 95 (361)
+..+..++||+|.|...-.. ..+.+-.+|+..+++.-... +..+ .....+..|++|+..+| ++|.+...
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~L-SDNAfg~~ 107 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDL-SDNAFGSE 107 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeec-cccccCcc
Confidence 45666666666665411110 11233345555555542111 0000 11222345556666666 66665554
Q ss_pred Cch----hhcCCCCccEEEecCCcccCCcCh-----HH--------HhcCCCCcEEEecCCcccCCC----CCCcCCCCC
Q 042011 96 FPK----FLYHQHDLALVDLSHIKMNGEFPT-----WL--------LENNTKLETLFLVNDSLTGPF----RLPIHSHRW 154 (361)
Q Consensus 96 ~~~----~l~~l~~L~~L~l~~n~l~~~~~~-----~~--------~~~~~~L~~L~l~~n~l~~~~----~~~~~~l~~ 154 (361)
.|. .++....|.+|.+++|.+. .+.. ++ ..+-|.|+.+....|++..-. ...+.....
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnGlG-p~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~ 186 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNGLG-PIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHEN 186 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCCCC-ccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcC
Confidence 443 3455677777777777654 2211 11 123466777777777764211 112333356
Q ss_pred cCEEEccCCcCCccCC-----hhhhccCCCccEEEecCCcccc----ccCccccCCCCCCEEeccCCcCccccchhhhh-
Q 042011 155 LEFLDISNNNFRCHIP-----VEIGDILPSLKFFNISMNALDG----SIPSSFGNMNFLRVLDLSNNQLTGEIPEHLAV- 224 (361)
Q Consensus 155 L~~L~l~~n~l~~~~~-----~~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~- 224 (361)
|+.+.+..|.|...-. ..++. +.+|+.||+..|.++. .+...+...+.|++|.+..|-++..-...++.
T Consensus 187 lk~vki~qNgIrpegv~~L~~~gl~y-~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~ 265 (388)
T COG5238 187 LKEVKIQQNGIRPEGVTMLAFLGLFY-SHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRR 265 (388)
T ss_pred ceeEEeeecCcCcchhHHHHHHHHHH-hCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHH
Confidence 7788888887763211 11222 5678888888887762 22344556667788888888776443333321
Q ss_pred ----CCCCCcEEEeecCCCCC
Q 042011 225 ----GCVNLESLALSNNSLEG 241 (361)
Q Consensus 225 ----~~~~L~~L~L~~n~l~~ 241 (361)
..|+|..|...+|.+.+
T Consensus 266 f~e~~~p~l~~L~~~Yne~~~ 286 (388)
T COG5238 266 FNEKFVPNLMPLPGDYNERRG 286 (388)
T ss_pred hhhhcCCCccccccchhhhcC
Confidence 35677777777776654
No 49
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.59 E-value=4.5e-08 Score=82.83 Aligned_cols=206 Identities=17% Similarity=0.105 Sum_probs=140.4
Q ss_pred CCCCccEEEecCCcccCCcC-hHHHhcCCCCcEEEecCCcccCCCCCCcCCCCCcCEEEccCCcCCccCChhhhccCCCc
Q 042011 102 HQHDLALVDLSHIKMNGEFP-TWLLENNTKLETLFLVNDSLTGPFRLPIHSHRWLEFLDISNNNFRCHIPVEIGDILPSL 180 (361)
Q Consensus 102 ~l~~L~~L~l~~n~l~~~~~-~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 180 (361)
.++.++.+|+.+|.|++.-. ..+++.+|.|+.|+++.|.+...+...-...++|+.|-+.+..+.+.-.......+|.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 47789999999999884311 23478899999999999998754433224567899999999888766556666668999
Q ss_pred cEEEecCCccccc--cCccccCC-CCCCEEeccCCcCccccc-hhhhhCCCCCcEEEeecCCCCCc-ccccccCCCCCCE
Q 042011 181 KFFNISMNALDGS--IPSSFGNM-NFLRVLDLSNNQLTGEIP-EHLAVGCVNLESLALSNNSLEGH-MFSRNFNLTNLEW 255 (361)
Q Consensus 181 ~~L~L~~n~l~~~--~~~~l~~~-~~L~~L~l~~n~l~~~~~-~~~~~~~~~L~~L~L~~n~l~~~-~~~~~~~~~~L~~ 255 (361)
++|.++.|++... ........ +.++++....|....... -.+.+.+|++..+-+..|.+... ....+...+.+..
T Consensus 149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~ 228 (418)
T KOG2982|consen 149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSC 228 (418)
T ss_pred hhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchh
Confidence 9999999965411 11112222 356677766665431111 12233578888888999877653 2334556677889
Q ss_pred EeccCCcCCccc-hhhhhcCCCCCEEECcCCcccccCCCC------CCCcCcceeeccc
Q 042011 256 LQLGGNRFVGEI-PQSLSKCSSLEGLYLNNNSLSGNVNVP------SSPANTLFNLSQN 307 (361)
Q Consensus 256 L~L~~n~l~~~~-~~~~~~l~~L~~L~l~~N~l~~~~~~~------~~~~~~L~~l~l~ 307 (361)
|+|+.|+|.+.. .+++.++++|..|.+++|.+.+..... ++.+++++.|+-+
T Consensus 229 LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 229 LNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred hhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence 999999998542 367888899999999999987644321 3566777766544
No 50
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.53 E-value=5.5e-09 Score=78.21 Aligned_cols=113 Identities=22% Similarity=0.331 Sum_probs=53.3
Q ss_pred CccEEEecCCcccCCcChHH--HhcCCCCcEEEecCCcccCCCCCCcCCCCCcCEEEccCCcCCccCChhhhccCCCccE
Q 042011 105 DLALVDLSHIKMNGEFPTWL--LENNTKLETLFLVNDSLTGPFRLPIHSHRWLEFLDISNNNFRCHIPVEIGDILPSLKF 182 (361)
Q Consensus 105 ~L~~L~l~~n~l~~~~~~~~--~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 182 (361)
.+..++++.|.+. .+++.. +.+...|+..++++|.+....+.....++.++.+++++|.++ .+|.++.. +|.|+.
T Consensus 28 E~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aa-m~aLr~ 104 (177)
T KOG4579|consen 28 ELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAA-MPALRS 104 (177)
T ss_pred Hhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhh-hHHhhh
Confidence 3444555555543 333321 223334444455555554322222223334555555555555 55555433 555555
Q ss_pred EEecCCccccccCccccCCCCCCEEeccCCcCccccchhh
Q 042011 183 FNISMNALDGSIPSSFGNMNFLRVLDLSNNQLTGEIPEHL 222 (361)
Q Consensus 183 L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~ 222 (361)
|+++.|.+. ..|..+..+.++-.|+..+|.+. ++|..+
T Consensus 105 lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl 142 (177)
T KOG4579|consen 105 LNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDL 142 (177)
T ss_pred cccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHH
Confidence 555555555 44444444555555555555554 555443
No 51
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.48 E-value=5.9e-08 Score=81.12 Aligned_cols=253 Identities=23% Similarity=0.170 Sum_probs=126.4
Q ss_pred cccCCCCCcEEEccCCCccccccccccc-ccCcccccEEeccCCCCCC---CC-------CchhhcCCCCccEEEecCCc
Q 042011 47 PLFNHSRLKIFYADNNELNAEITQSHSL-IAPNFQLNSLSLSSDYGDG---FI-------FPKFLYHQHDLALVDLSHIK 115 (361)
Q Consensus 47 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~---~~-------~~~~l~~l~~L~~L~l~~n~ 115 (361)
.+..+..+..++||+|.|.......+.. +..-.+|+..++ ++-... .. ....+..|+.|++.++|.|.
T Consensus 25 el~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnf-sd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNA 103 (388)
T COG5238 25 ELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNF-SDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNA 103 (388)
T ss_pred HHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeeh-hhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccc
Confidence 3455788999999999887543332111 112225555555 332211 11 11234557777777777777
Q ss_pred ccCCcChH---HHhcCCCCcEEEecCCcccCCCCCCcCCCCCcCEEEccCCcCCccCChhhhccCCCccEEEecCCcccc
Q 042011 116 MNGEFPTW---LLENNTKLETLFLVNDSLTGPFRLPIHSHRWLEFLDISNNNFRCHIPVEIGDILPSLKFFNISMNALDG 192 (361)
Q Consensus 116 l~~~~~~~---~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~ 192 (361)
+....|.. +.+..+.|++|.+++|.+...--..++ +.|.+ +..|+ ...+ -|.|+.+....|++..
T Consensus 104 fg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rig--kal~~--la~nK-------Kaa~-kp~Le~vicgrNRlen 171 (388)
T COG5238 104 FGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIG--KALFH--LAYNK-------KAAD-KPKLEVVICGRNRLEN 171 (388)
T ss_pred cCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHH--HHHHH--HHHHh-------hhcc-CCCceEEEeccchhcc
Confidence 66555432 244556677777777655421111010 00000 00000 0011 2445555555555431
Q ss_pred c----cCccccCCCCCCEEeccCCcCcccc-----chhhhhCCCCCcEEEeecCCCCC----cccccccCCCCCCEEecc
Q 042011 193 S----IPSSFGNMNFLRVLDLSNNQLTGEI-----PEHLAVGCVNLESLALSNNSLEG----HMFSRNFNLTNLEWLQLG 259 (361)
Q Consensus 193 ~----~~~~l~~~~~L~~L~l~~n~l~~~~-----~~~~~~~~~~L~~L~L~~n~l~~----~~~~~~~~~~~L~~L~L~ 259 (361)
. ....+..-..|+++.+..|.|.-+- -..++ -+.+|+.||+..|-++. .....++.|+.|+.|.+.
T Consensus 172 gs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~-y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~ln 250 (388)
T COG5238 172 GSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLF-YSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLN 250 (388)
T ss_pred CcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHH-HhCcceeeeccccchhhhhHHHHHHHhcccchhhhcccc
Confidence 0 0111222245566666666554211 01122 35566666666665543 233445566667777777
Q ss_pred CCcCCccchhhh----h--cCCCCCEEECcCCcccccCCCC-----C--CCcCcceeeccccccccC
Q 042011 260 GNRFVGEIPQSL----S--KCSSLEGLYLNNNSLSGNVNVP-----S--SPANTLFNLSQNSRRFTS 313 (361)
Q Consensus 260 ~n~l~~~~~~~~----~--~l~~L~~L~l~~N~l~~~~~~~-----~--~~~~~L~~l~l~~N~~~~ 313 (361)
.|-++.....++ . ..|+|+.|-...|.+.+.+... + ..++-|..+.++||+|..
T Consensus 251 DClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E 317 (388)
T COG5238 251 DCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKE 317 (388)
T ss_pred chhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchh
Confidence 776664433221 1 1367777777777665432221 1 456778888888888864
No 52
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.38 E-value=1.3e-07 Score=80.10 Aligned_cols=64 Identities=19% Similarity=0.207 Sum_probs=31.3
Q ss_pred CCCccEEEecCCccccc-cCccccCCCCCCEEeccCCcCccccchhhhhCCCCCcEEEeecCCCC
Q 042011 177 LPSLKFFNISMNALDGS-IPSSFGNMNFLRVLDLSNNQLTGEIPEHLAVGCVNLESLALSNNSLE 240 (361)
Q Consensus 177 l~~L~~L~L~~n~l~~~-~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~ 240 (361)
+|++..+.+..|.+... ....+..+|.+-.|+++.+.+..-..-....+++.|..|.++++.+.
T Consensus 198 Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 198 FPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS 262 (418)
T ss_pred cccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence 45666666666655321 12234444555556666666552211111225566666666666554
No 53
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.35 E-value=3.7e-07 Score=55.32 Aligned_cols=37 Identities=41% Similarity=0.567 Sum_probs=24.4
Q ss_pred CCCCeEeCCCccccCcCChhhhhccCCCCeEeCcCCccc
Q 042011 2 TSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQ 40 (361)
Q Consensus 2 ~~L~~L~L~~n~i~~~i~~~~~~~l~~L~~L~Ls~n~l~ 40 (361)
++|++|++++|+|+ .+|. .++++++|++|++++|+++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~-~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPP-ELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-S-SHGG-HGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCc-ccCc-hHhCCCCCCEEEecCCCCC
Confidence 46677777777776 6665 5677777777777777766
No 54
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.28 E-value=1.6e-06 Score=69.58 Aligned_cols=125 Identities=26% Similarity=0.300 Sum_probs=77.5
Q ss_pred CEEEccCCcCCccCChhhhccCCCccEEEecCCccccccCccccCCCCCCEEeccCCcCccccchhhhhCCCCCcEEEee
Q 042011 156 EFLDISNNNFRCHIPVEIGDILPSLKFFNISMNALDGSIPSSFGNMNFLRVLDLSNNQLTGEIPEHLAVGCVNLESLALS 235 (361)
Q Consensus 156 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~ 235 (361)
+++++.+.++. .+. ..+........+|+++|.+. .+ ..|..++.|.+|.+++|+|+ .+...+...+++|..|.+.
T Consensus 22 ~e~~LR~lkip-~ie-nlg~~~d~~d~iDLtdNdl~-~l-~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~Lt 96 (233)
T KOG1644|consen 22 RELDLRGLKIP-VIE-NLGATLDQFDAIDLTDNDLR-KL-DNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILT 96 (233)
T ss_pred ccccccccccc-chh-hccccccccceecccccchh-hc-ccCCCccccceEEecCCcce-eeccchhhhccccceEEec
Confidence 44555555543 222 23333456677777777775 22 24566777777777777777 6666666667777777777
Q ss_pred cCCCCCc-ccccccCCCCCCEEeccCCcCCccc---hhhhhcCCCCCEEECcCC
Q 042011 236 NNSLEGH-MFSRNFNLTNLEWLQLGGNRFVGEI---PQSLSKCSSLEGLYLNNN 285 (361)
Q Consensus 236 ~n~l~~~-~~~~~~~~~~L~~L~L~~n~l~~~~---~~~~~~l~~L~~L~l~~N 285 (361)
+|++... ....+..+++|+.|.+-+|+++..- .-.+..+|+|+.||.++=
T Consensus 97 nNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 97 NNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred CcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 7777642 2234556777777777777766421 133555677777777653
No 55
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.21 E-value=1.8e-06 Score=52.28 Aligned_cols=37 Identities=43% Similarity=0.632 Sum_probs=20.8
Q ss_pred CCCEEeccCCcCCccchhhhhcCCCCCEEECcCCcccc
Q 042011 252 NLEWLQLGGNRFVGEIPQSLSKCSSLEGLYLNNNSLSG 289 (361)
Q Consensus 252 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 289 (361)
+|++|++++|+|+ .+|..++++++|+.|++++|+|++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence 4566666666666 344445666666666666666653
No 56
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=98.12 E-value=8.6e-06 Score=62.58 Aligned_cols=37 Identities=16% Similarity=0.086 Sum_probs=12.5
Q ss_pred CCcCCCCCcCEEEccCCcCCccCChhhhccCCCccEEEe
Q 042011 147 LPIHSHRWLEFLDISNNNFRCHIPVEIGDILPSLKFFNI 185 (361)
Q Consensus 147 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L 185 (361)
..|..+++++.+.+.++ +. .++...+..+++++.+.+
T Consensus 29 ~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~ 65 (129)
T PF13306_consen 29 NAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITF 65 (129)
T ss_dssp TTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEE
T ss_pred hhccccccccccccccc-cc-ccceeeeecccccccccc
Confidence 33444444444444332 32 333333333334444444
No 57
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.09 E-value=4.4e-06 Score=67.07 Aligned_cols=124 Identities=19% Similarity=0.205 Sum_probs=63.2
Q ss_pred CeEeCCCccccCcCChhhhhccCCCCeEeCcCCcccccCCcccccCCCCCcEEEccCCCcccccccccccccCcccccEE
Q 042011 5 RILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLIAPNFQLNSL 84 (361)
Q Consensus 5 ~~L~L~~n~i~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L 84 (361)
+.++|.+.++. .+.. .=....+...+||++|.+. .++ .|..+++|.+|.+.+|.|+.+.+..
T Consensus 22 ~e~~LR~lkip-~ien-lg~~~d~~d~iDLtdNdl~-~l~--~lp~l~rL~tLll~nNrIt~I~p~L------------- 83 (233)
T KOG1644|consen 22 RELDLRGLKIP-VIEN-LGATLDQFDAIDLTDNDLR-KLD--NLPHLPRLHTLLLNNNRITRIDPDL------------- 83 (233)
T ss_pred ccccccccccc-chhh-ccccccccceecccccchh-hcc--cCCCccccceEEecCCcceeeccch-------------
Confidence 34555555554 3332 1122456667777777665 333 4666677777777777666543332
Q ss_pred eccCCCCCCCCCchhhcCCCCccEEEecCCcccC--CcChHHHhcCCCCcEEEecCCcccCCC---CCCcCCCCCcCEEE
Q 042011 85 SLSSDYGDGFIFPKFLYHQHDLALVDLSHIKMNG--EFPTWLLENNTKLETLFLVNDSLTGPF---RLPIHSHRWLEFLD 159 (361)
Q Consensus 85 ~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~--~~~~~~~~~~~~L~~L~l~~n~l~~~~---~~~~~~l~~L~~L~ 159 (361)
-..++.|+.|.+.+|.|.. .+.. +..+++|++|.+-+|.++..- ...+..+|+|+.||
T Consensus 84 ---------------~~~~p~l~~L~LtnNsi~~l~dl~p--La~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LD 146 (233)
T KOG1644|consen 84 ---------------DTFLPNLKTLILTNNSIQELGDLDP--LASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLD 146 (233)
T ss_pred ---------------hhhccccceEEecCcchhhhhhcch--hccCCccceeeecCCchhcccCceeEEEEecCcceEee
Confidence 2223445555555554431 1111 334555666666555544211 12345566677776
Q ss_pred ccCC
Q 042011 160 ISNN 163 (361)
Q Consensus 160 l~~n 163 (361)
+..-
T Consensus 147 F~kV 150 (233)
T KOG1644|consen 147 FQKV 150 (233)
T ss_pred hhhh
Confidence 6543
No 58
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.08 E-value=1.8e-07 Score=82.65 Aligned_cols=110 Identities=25% Similarity=0.190 Sum_probs=46.3
Q ss_pred CCCCCCEEeccCCc-CccccchhhhhCCCCCcEEEeecCCCCC--cccccccCCCCCCEEeccCCcCC-ccc----hhhh
Q 042011 200 NMNFLRVLDLSNNQ-LTGEIPEHLAVGCVNLESLALSNNSLEG--HMFSRNFNLTNLEWLQLGGNRFV-GEI----PQSL 271 (361)
Q Consensus 200 ~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~L~~L~L~~n~l~~--~~~~~~~~~~~L~~L~L~~n~l~-~~~----~~~~ 271 (361)
++++|+.+.+++++ +++.--..+..+++.|+.+++..+.... .....-.+++.|+.+.++++... +.. ...-
T Consensus 318 ~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~ 397 (483)
T KOG4341|consen 318 HCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSS 397 (483)
T ss_pred CCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhcc
Confidence 34555555555553 2211122333345555555555543221 12222234555555555555322 110 1111
Q ss_pred hcCCCCCEEECcCCcccc-cCCCCCCCcCcceeeccccc
Q 042011 272 SKCSSLEGLYLNNNSLSG-NVNVPSSPANTLFNLSQNSR 309 (361)
Q Consensus 272 ~~l~~L~~L~l~~N~l~~-~~~~~~~~~~~L~~l~l~~N 309 (361)
.....|+.+.++++.... ..-+.+..++.|+++++.+.
T Consensus 398 c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~ 436 (483)
T KOG4341|consen 398 CSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDC 436 (483)
T ss_pred ccccccceeeecCCCCchHHHHHHHhhCcccceeeeech
Confidence 223455555555554322 22223344555555555543
No 59
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.05 E-value=3.2e-05 Score=70.10 Aligned_cols=136 Identities=18% Similarity=0.175 Sum_probs=74.1
Q ss_pred hcCCCCccEEEecCCcccCCcChHHHhcCCCCcEEEecCCcccCCCCCCcCCCCCcCEEEccCC-cCCccCChhhhccCC
Q 042011 100 LYHQHDLALVDLSHIKMNGEFPTWLLENNTKLETLFLVNDSLTGPFRLPIHSHRWLEFLDISNN-NFRCHIPVEIGDILP 178 (361)
Q Consensus 100 l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~ 178 (361)
+..+.+++.|++++|.++ .+|. -.++|++|.+++|.--...|..+ .++|++|++++| .+. .+| +
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~----LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP-------~ 112 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV----LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLP-------E 112 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC----CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-ccc-------c
Confidence 445678888888888776 6662 13468888887744323344433 246777887776 443 333 3
Q ss_pred CccEEEecCCccccccCccccCC-CCCCEEeccCCcCc--cccchhhhhCCCCCcEEEeecCCCCCcccccccCCCCCCE
Q 042011 179 SLKFFNISMNALDGSIPSSFGNM-NFLRVLDLSNNQLT--GEIPEHLAVGCVNLESLALSNNSLEGHMFSRNFNLTNLEW 255 (361)
Q Consensus 179 ~L~~L~L~~n~l~~~~~~~l~~~-~~L~~L~l~~n~l~--~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~ 255 (361)
+|+.|+++.+... . +..+ ++|+.|.+.++... ..+|. . -.++|++|++++|.... .|..+ ..+|+.
T Consensus 113 sLe~L~L~~n~~~-~----L~~LPssLk~L~I~~~n~~~~~~lp~-~--LPsSLk~L~Is~c~~i~-LP~~L--P~SLk~ 181 (426)
T PRK15386 113 SVRSLEIKGSATD-S----IKNVPNGLTSLSINSYNPENQARIDN-L--ISPSLKTLSLTGCSNII-LPEKL--PESLQS 181 (426)
T ss_pred ccceEEeCCCCCc-c----cccCcchHhheecccccccccccccc-c--cCCcccEEEecCCCccc-Ccccc--cccCcE
Confidence 5666777655443 1 1122 24566666433211 01121 0 23567777777766543 23322 256777
Q ss_pred EeccCC
Q 042011 256 LQLGGN 261 (361)
Q Consensus 256 L~L~~n 261 (361)
|+++.+
T Consensus 182 L~ls~n 187 (426)
T PRK15386 182 ITLHIE 187 (426)
T ss_pred EEeccc
Confidence 777665
No 60
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.04 E-value=2e-06 Score=83.96 Aligned_cols=151 Identities=21% Similarity=0.189 Sum_probs=96.3
Q ss_pred cccEEeccCCCCCCCCCchhhc-CCCCccEEEecCCcccCCcChHHHhcCCCCcEEEecCCcccCCCCCCcCCCCCcCEE
Q 042011 80 QLNSLSLSSDYGDGFIFPKFLY-HQHDLALVDLSHIKMNGEFPTWLLENNTKLETLFLVNDSLTGPFRLPIHSHRWLEFL 158 (361)
Q Consensus 80 ~L~~L~l~~~~~~~~~~~~~l~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 158 (361)
+|++|++++...+....+..++ .+|.|++|.+++-.+...-...++.++++|..||+++.+++.. ..+..+++|+.|
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L 200 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVL 200 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHH
Confidence 7888888554444444555554 3788888888887665333334477888888888888887753 567778888888
Q ss_pred EccCCcCCc-cCChhhhccCCCccEEEecCCcccccc------CccccCCCCCCEEeccCCcCccccchhhhhCCCCCcE
Q 042011 159 DISNNNFRC-HIPVEIGDILPSLKFFNISMNALDGSI------PSSFGNMNFLRVLDLSNNQLTGEIPEHLAVGCVNLES 231 (361)
Q Consensus 159 ~l~~n~l~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~------~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~ 231 (361)
.+.+=.+.. .--..+|. +.+|+.||+|........ -+.-..+|.|+.||.+++.+...+-+.+...-++|+.
T Consensus 201 ~mrnLe~e~~~~l~~LF~-L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~ 279 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFN-LKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQ 279 (699)
T ss_pred hccCCCCCchhhHHHHhc-ccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhh
Confidence 777766552 11235666 788888888876543111 1122347788888888887775554444434444544
Q ss_pred EE
Q 042011 232 LA 233 (361)
Q Consensus 232 L~ 233 (361)
+.
T Consensus 280 i~ 281 (699)
T KOG3665|consen 280 IA 281 (699)
T ss_pred hh
Confidence 43
No 61
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=98.00 E-value=1.9e-05 Score=60.70 Aligned_cols=14 Identities=29% Similarity=0.207 Sum_probs=5.3
Q ss_pred cccCCCCCCEEecc
Q 042011 246 RNFNLTNLEWLQLG 259 (361)
Q Consensus 246 ~~~~~~~L~~L~L~ 259 (361)
.|..++.++.+++.
T Consensus 76 ~F~~~~~l~~i~~~ 89 (129)
T PF13306_consen 76 AFSNCTNLKNIDIP 89 (129)
T ss_dssp TTTT-TTECEEEET
T ss_pred cccccccccccccC
Confidence 33334444444443
No 62
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.99 E-value=9.2e-08 Score=84.51 Aligned_cols=303 Identities=18% Similarity=0.050 Sum_probs=167.8
Q ss_pred CCCeEeCCCccccCcCChh-hhhccCCCCeEeCcCCcc-cccCCcccccCCCCCcEEEccCC-CcccccccccccccCcc
Q 042011 3 SLRILDVSSNQLTGSISSS-PLVHLTSIEELMLSNNHF-QIPISLEPLFNHSRLKIFYADNN-ELNAEITQSHSLIAPNF 79 (361)
Q Consensus 3 ~L~~L~L~~n~i~~~i~~~-~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~~l~~L~~L~l~~n-~~~~~~~~~~~~~~~~~ 79 (361)
.|+.|.+++++=.+.-+-. ....++++++|++.++.- +...-...-..+++|++|++..| .++...-.. ....+.
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~--la~gC~ 216 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKY--LAEGCR 216 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHH--HHHhhh
Confidence 3566777766433222211 344677888887777742 21111112245777888888775 333222111 123455
Q ss_pred cccEEeccCCCCCCCCCc-hhhcCCCCccEEEecCCc-ccCCcChHHHhcCCCCcEEEecCCc-ccCCC-CCCcCCCCCc
Q 042011 80 QLNSLSLSSDYGDGFIFP-KFLYHQHDLALVDLSHIK-MNGEFPTWLLENNTKLETLFLVNDS-LTGPF-RLPIHSHRWL 155 (361)
Q Consensus 80 ~L~~L~l~~~~~~~~~~~-~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~-~~~~~~l~~L 155 (361)
+|+++++++...+++... ..+.+++.++.+.+.+|. +....-...-..+..+..+++..|. ++... ...-..+..|
T Consensus 217 kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~l 296 (483)
T KOG4341|consen 217 KLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHAL 296 (483)
T ss_pred hHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHh
Confidence 777777766666665322 234456666666666543 1101111112234456666665553 22211 1111234668
Q ss_pred CEEEccCCc-CCccCChhhhccCCCccEEEecCCccc-cccCcc-ccCCCCCCEEeccCCcCcccc-chhhhhCCCCCcE
Q 042011 156 EFLDISNNN-FRCHIPVEIGDILPSLKFFNISMNALD-GSIPSS-FGNMNFLRVLDLSNNQLTGEI-PEHLAVGCVNLES 231 (361)
Q Consensus 156 ~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~-l~~~~~L~~L~l~~n~l~~~~-~~~~~~~~~~L~~ 231 (361)
+.++.+++. +++..-..+....++|+.+.++.+..- ..-... -.+++.|+.+++.++...... -.....+++.|+.
T Consensus 297 q~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~ 376 (483)
T KOG4341|consen 297 QVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRV 376 (483)
T ss_pred hhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhcc
Confidence 888887753 333333455666789999999888632 111111 246788999999888654121 1233347889999
Q ss_pred EEeecCCCC-Cc----ccccccCCCCCCEEeccCCcCC-ccchhhhhcCCCCCEEECcCCcccc-cCCCCC-CCcCccee
Q 042011 232 LALSNNSLE-GH----MFSRNFNLTNLEWLQLGGNRFV-GEIPQSLSKCSSLEGLYLNNNSLSG-NVNVPS-SPANTLFN 303 (361)
Q Consensus 232 L~L~~n~l~-~~----~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~-~~~~~L~~ 303 (361)
+.++++... +. ....-..+..|+.+.+++++.. +...+.+..+++|+.+++-+++-.. .....| ..+++++.
T Consensus 377 lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v 456 (483)
T KOG4341|consen 377 LSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKV 456 (483)
T ss_pred CChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCcccee
Confidence 999988643 21 1223346678999999998654 3445667778999999988876432 211222 45566665
Q ss_pred eccc
Q 042011 304 LSQN 307 (361)
Q Consensus 304 l~l~ 307 (361)
.-+-
T Consensus 457 ~a~~ 460 (483)
T KOG4341|consen 457 HAYF 460 (483)
T ss_pred hhhc
Confidence 4443
No 63
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.86 E-value=1.1e-05 Score=79.05 Aligned_cols=135 Identities=20% Similarity=0.241 Sum_probs=73.2
Q ss_pred CCCcEEEecCCccc-CCCCCCc-CCCCCcCEEEccCCcCCccCChhhhccCCCccEEEecCCccccccCccccCCCCCCE
Q 042011 129 TKLETLFLVNDSLT-GPFRLPI-HSHRWLEFLDISNNNFRCHIPVEIGDILPSLKFFNISMNALDGSIPSSFGNMNFLRV 206 (361)
Q Consensus 129 ~~L~~L~l~~n~l~-~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~ 206 (361)
.+|++|++++...- ..-+..+ ..+|+|++|.+++-.+...--..++..+|+|..||+|+.+++. + ..++.+++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~n-l-~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISN-L-SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccC-c-HHHhccccHHH
Confidence 46777777664322 1111111 2457777777776555322122344456777777777777762 2 45666777777
Q ss_pred EeccCCcCcc-ccchhhhhCCCCCcEEEeecCCCCCcc------cccccCCCCCCEEeccCCcCCcc
Q 042011 207 LDLSNNQLTG-EIPEHLAVGCVNLESLALSNNSLEGHM------FSRNFNLTNLEWLQLGGNRFVGE 266 (361)
Q Consensus 207 L~l~~n~l~~-~~~~~~~~~~~~L~~L~L~~n~l~~~~------~~~~~~~~~L~~L~L~~n~l~~~ 266 (361)
|.+.+=.+.. ..-..+| .+++|+.||+|........ .+.-..+|.|+.||.+++.+...
T Consensus 200 L~mrnLe~e~~~~l~~LF-~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~ 265 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLF-NLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEE 265 (699)
T ss_pred HhccCCCCCchhhHHHHh-cccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHH
Confidence 7766655542 1123445 6777777777765433211 11122456666666666655543
No 64
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.81 E-value=0.00014 Score=66.10 Aligned_cols=134 Identities=11% Similarity=0.119 Sum_probs=66.0
Q ss_pred hccCCCCeEeCcCCcccccCCcccccCCCCCcEEEccCCCcccccccccccccCcccccEEeccCCC-CCCCCCchhhcC
Q 042011 24 VHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLIAPNFQLNSLSLSSDY-GDGFIFPKFLYH 102 (361)
Q Consensus 24 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~l~~ 102 (361)
..+.++++|++++|.++ .+| . -..+|++|.+++|.--...+.. . ..+|++|.+ .+| .+. .+|
T Consensus 49 ~~~~~l~~L~Is~c~L~-sLP-~---LP~sLtsL~Lsnc~nLtsLP~~----L-P~nLe~L~L-s~Cs~L~-sLP----- 111 (426)
T PRK15386 49 EEARASGRLYIKDCDIE-SLP-V---LPNELTEITIENCNNLTTLPGS----I-PEGLEKLTV-CHCPEIS-GLP----- 111 (426)
T ss_pred HHhcCCCEEEeCCCCCc-ccC-C---CCCCCcEEEccCCCCcccCCch----h-hhhhhheEc-cCccccc-ccc-----
Confidence 34677888888888776 555 1 2345788888775432222221 1 126777777 444 332 222
Q ss_pred CCCccEEEecCCccc--CCcChHHHhcCCCCcEEEecCCcccC--CCCCCcCCCCCcCEEEccCCcCCccCChhhhccCC
Q 042011 103 QHDLALVDLSHIKMN--GEFPTWLLENNTKLETLFLVNDSLTG--PFRLPIHSHRWLEFLDISNNNFRCHIPVEIGDILP 178 (361)
Q Consensus 103 l~~L~~L~l~~n~l~--~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 178 (361)
..|+.|+++.+... ..+| ++|+.|.+.+++... ..+.. -.++|++|++++|... ..|..+. .
T Consensus 112 -~sLe~L~L~~n~~~~L~~LP-------ssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i-~LP~~LP---~ 177 (426)
T PRK15386 112 -ESVRSLEIKGSATDSIKNVP-------NGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNI-ILPEKLP---E 177 (426)
T ss_pred -cccceEEeCCCCCcccccCc-------chHhheeccccccccccccccc--cCCcccEEEecCCCcc-cCccccc---c
Confidence 34566666554432 1222 234455553322110 01100 1135666777666654 4443332 3
Q ss_pred CccEEEecCC
Q 042011 179 SLKFFNISMN 188 (361)
Q Consensus 179 ~L~~L~L~~n 188 (361)
+|+.|+++.+
T Consensus 178 SLk~L~ls~n 187 (426)
T PRK15386 178 SLQSITLHIE 187 (426)
T ss_pred cCcEEEeccc
Confidence 6666666654
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.34 E-value=7.1e-05 Score=62.74 Aligned_cols=107 Identities=19% Similarity=0.205 Sum_probs=73.6
Q ss_pred CCCCeEeCCCccccCcCChhhhhccCCCCeEeCcCC--cccccCCcccccCCCCCcEEEccCCCcccccccccccccCcc
Q 042011 2 TSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNN--HFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLIAPNF 79 (361)
Q Consensus 2 ~~L~~L~L~~n~i~~~i~~~~~~~l~~L~~L~Ls~n--~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~ 79 (361)
..|+.|++.+..++ .+.. |-.+++|++|.+|.| ++.+.++ .....+++|+++++++|++.. ...+.....+.
T Consensus 43 ~~le~ls~~n~glt-t~~~--~P~Lp~LkkL~lsdn~~~~~~~l~-vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~ 116 (260)
T KOG2739|consen 43 VELELLSVINVGLT-TLTN--FPKLPKLKKLELSDNYRRVSGGLE-VLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELE 116 (260)
T ss_pred cchhhhhhhcccee-eccc--CCCcchhhhhcccCCcccccccce-ehhhhCCceeEEeecCCcccc--ccccchhhhhc
Confidence 45677777777776 5544 666889999999999 5554444 245667999999999999874 22223344555
Q ss_pred cccEEeccCCCCCCCCC---chhhcCCCCccEEEecCCc
Q 042011 80 QLNSLSLSSDYGDGFIF---PKFLYHQHDLALVDLSHIK 115 (361)
Q Consensus 80 ~L~~L~l~~~~~~~~~~---~~~l~~l~~L~~L~l~~n~ 115 (361)
+|..|++ .+|..+... ...|.-+++|++||-....
T Consensus 117 nL~~Ldl-~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 117 NLKSLDL-FNCSVTNLDDYREKVFLLLPSLKYLDGCDVD 154 (260)
T ss_pred chhhhhc-ccCCccccccHHHHHHHHhhhhccccccccC
Confidence 7889999 777766521 2346668888888765443
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.31 E-value=1.2e-05 Score=67.76 Aligned_cols=81 Identities=31% Similarity=0.340 Sum_probs=35.0
Q ss_pred CccEEEecCCccccccCccccCCCCCCEEeccCCcCccccchhhhhCCCCCcEEEeecCCCCCc-ccccccCCCCCCEEe
Q 042011 179 SLKFFNISMNALDGSIPSSFGNMNFLRVLDLSNNQLTGEIPEHLAVGCVNLESLALSNNSLEGH-MFSRNFNLTNLEWLQ 257 (361)
Q Consensus 179 ~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~~~~~~~L~~L~ 257 (361)
+.+.|+.++|.++. + .....++.|+.|.++-|+|+ .+... ..|++|++|+|..|.|.+. ....+.++++|+.|.
T Consensus 20 ~vkKLNcwg~~L~D-I-sic~kMp~lEVLsLSvNkIs-sL~pl--~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDD-I-SICEKMPLLEVLSLSVNKIS-SLAPL--QRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HhhhhcccCCCccH-H-HHHHhcccceeEEeeccccc-cchhH--HHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 44445555555441 1 12234445555555555554 33221 1344555555555554432 112233445555555
Q ss_pred ccCCcCC
Q 042011 258 LGGNRFV 264 (361)
Q Consensus 258 L~~n~l~ 264 (361)
|..|.-.
T Consensus 95 L~ENPCc 101 (388)
T KOG2123|consen 95 LDENPCC 101 (388)
T ss_pred hccCCcc
Confidence 5544433
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.29 E-value=0.00011 Score=61.71 Aligned_cols=113 Identities=14% Similarity=0.079 Sum_probs=79.2
Q ss_pred CChhhhhccCCCCeEeCcCCcccccCCcccccCCCCCcEEEccCC--CcccccccccccccCcccccEEeccCCCCCCCC
Q 042011 18 ISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFYADNN--ELNAEITQSHSLIAPNFQLNSLSLSSDYGDGFI 95 (361)
Q Consensus 18 i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n--~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 95 (361)
+.. ....+..|+.+++.+..++ ++ ..|-.+++|++|.++.| ++.+..... ...+.+|+++++ +.|.+...
T Consensus 35 ~~g-l~d~~~~le~ls~~n~glt-t~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl---~e~~P~l~~l~l-s~Nki~~l 106 (260)
T KOG2739|consen 35 LGG-LTDEFVELELLSVINVGLT-TL--TNFPKLPKLKKLELSDNYRRVSGGLEVL---AEKAPNLKVLNL-SGNKIKDL 106 (260)
T ss_pred ccc-ccccccchhhhhhhcccee-ec--ccCCCcchhhhhcccCCcccccccceeh---hhhCCceeEEee-cCCccccc
Confidence 554 5667788999999998887 33 36788999999999999 444333322 344479999999 99988742
Q ss_pred -CchhhcCCCCccEEEecCCcccCC--cChHHHhcCCCCcEEEecC
Q 042011 96 -FPKFLYHQHDLALVDLSHIKMNGE--FPTWLLENNTKLETLFLVN 138 (361)
Q Consensus 96 -~~~~l~~l~~L~~L~l~~n~l~~~--~~~~~~~~~~~L~~L~l~~ 138 (361)
--..+..+.+|..|++..|..+.. --...|.-+++|++|+-..
T Consensus 107 stl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 107 STLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCD 152 (260)
T ss_pred cccchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccccc
Confidence 112355677888999999887631 1123467788888876543
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.28 E-value=1.1e-05 Score=68.12 Aligned_cols=99 Identities=23% Similarity=0.191 Sum_probs=66.4
Q ss_pred CCCeEeCCCccccCcCChhhhhccCCCCeEeCcCCcccccCCcccccCCCCCcEEEccCCCcccccccccccccCccccc
Q 042011 3 SLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLIAPNFQLN 82 (361)
Q Consensus 3 ~L~~L~L~~n~i~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~ 82 (361)
+.++|+..++.++ +|.- ..+++.|+.|.||-|.|+ ++. .+..|++|++|+|..|.|.+... +..+..+++|+
T Consensus 20 ~vkKLNcwg~~L~-DIsi--c~kMp~lEVLsLSvNkIs-sL~--pl~rCtrLkElYLRkN~I~sldE--L~YLknlpsLr 91 (388)
T KOG2123|consen 20 NVKKLNCWGCGLD-DISI--CEKMPLLEVLSLSVNKIS-SLA--PLQRCTRLKELYLRKNCIESLDE--LEYLKNLPSLR 91 (388)
T ss_pred HhhhhcccCCCcc-HHHH--HHhcccceeEEeeccccc-cch--hHHHHHHHHHHHHHhcccccHHH--HHHHhcCchhh
Confidence 4577888888887 6653 678888999999988887 443 57888888999988888865322 22245556777
Q ss_pred EEeccCCCCCCCCCc-----hhhcCCCCccEEE
Q 042011 83 SLSLSSDYGDGFIFP-----KFLYHQHDLALVD 110 (361)
Q Consensus 83 ~L~l~~~~~~~~~~~-----~~l~~l~~L~~L~ 110 (361)
.|.| ..|.-.+..+ ..+..+++|+.||
T Consensus 92 ~LWL-~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 92 TLWL-DENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hHhh-ccCCcccccchhHHHHHHHHcccchhcc
Confidence 7777 5444433322 2345566666664
No 69
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.94 E-value=9.2e-05 Score=70.39 Aligned_cols=62 Identities=29% Similarity=0.153 Sum_probs=26.1
Q ss_pred CCCccEEEecCCc-ccCCcChHHHhcCCCCcEEEecCCc-ccCC-CCCCcCCCCCcCEEEccCCc
Q 042011 103 QHDLALVDLSHIK-MNGEFPTWLLENNTKLETLFLVNDS-LTGP-FRLPIHSHRWLEFLDISNNN 164 (361)
Q Consensus 103 l~~L~~L~l~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~l~~n~ 164 (361)
+.+|+.|+++++. +++..-..+...+++|++|.+.++. ++.. +......++.|++|+++++.
T Consensus 242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 4555555555554 3322222323335555555544443 2211 11112234445555555443
No 70
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.59 E-value=0.00023 Score=67.72 Aligned_cols=112 Identities=23% Similarity=0.101 Sum_probs=49.2
Q ss_pred CCCccEEEecCCc-ccCCcChHHHhcCCCCcEEEecCC-cccCCC----CCCcCCCCCcCEEEccCCc-CCccCChhhhc
Q 042011 103 QHDLALVDLSHIK-MNGEFPTWLLENNTKLETLFLVND-SLTGPF----RLPIHSHRWLEFLDISNNN-FRCHIPVEIGD 175 (361)
Q Consensus 103 l~~L~~L~l~~n~-l~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~----~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~ 175 (361)
++.|+.+.+..+. ++..--..+...++.|+.|+++++ ...... ......+++|+.++++++. +++..-..+..
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 4555555555543 221111222445556666666542 111100 1122233555666666555 44333333333
Q ss_pred cCCCccEEEecCCc-cccc-cCccccCCCCCCEEeccCCcC
Q 042011 176 ILPSLKFFNISMNA-LDGS-IPSSFGNMNFLRVLDLSNNQL 214 (361)
Q Consensus 176 ~l~~L~~L~L~~n~-l~~~-~~~~l~~~~~L~~L~l~~n~l 214 (361)
.+++|+.|.+.++. ++.. +......++.|++|+++++..
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 35566666655554 3311 122233455566666665543
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.91 E-value=0.0022 Score=32.21 Aligned_cols=16 Identities=63% Similarity=0.762 Sum_probs=8.5
Q ss_pred CCeEeCCCccccCcCCh
Q 042011 4 LRILDVSSNQLTGSISS 20 (361)
Q Consensus 4 L~~L~L~~n~i~~~i~~ 20 (361)
|++||+++|+++ .+|.
T Consensus 2 L~~Ldls~n~l~-~ip~ 17 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPS 17 (22)
T ss_dssp ESEEEETSSEES-EEGT
T ss_pred ccEEECCCCcCE-eCCh
Confidence 455555555555 5554
No 72
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=95.76 E-value=0.0095 Score=31.24 Aligned_cols=23 Identities=39% Similarity=0.615 Sum_probs=14.8
Q ss_pred CCCCCeEeCCCccccCcCChhhhh
Q 042011 1 MTSLRILDVSSNQLTGSISSSPLV 24 (361)
Q Consensus 1 l~~L~~L~L~~n~i~~~i~~~~~~ 24 (361)
|++|+.|+|++|+|+ .+|...|.
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~~f~ 23 (26)
T smart00370 1 LPNLRELDLSNNQLS-SLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHHHcc
Confidence 456777777777776 66665553
No 73
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=95.76 E-value=0.0095 Score=31.24 Aligned_cols=23 Identities=39% Similarity=0.615 Sum_probs=14.8
Q ss_pred CCCCCeEeCCCccccCcCChhhhh
Q 042011 1 MTSLRILDVSSNQLTGSISSSPLV 24 (361)
Q Consensus 1 l~~L~~L~L~~n~i~~~i~~~~~~ 24 (361)
|++|+.|+|++|+|+ .+|...|.
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~~f~ 23 (26)
T smart00369 1 LPNLRELDLSNNQLS-SLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHHHcc
Confidence 456777777777776 66665553
No 74
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.64 E-value=0.0061 Score=30.57 Aligned_cols=12 Identities=50% Similarity=0.564 Sum_probs=5.7
Q ss_pred CCEEECcCCccc
Q 042011 277 LEGLYLNNNSLS 288 (361)
Q Consensus 277 L~~L~l~~N~l~ 288 (361)
|++||+++|+++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 444444444444
No 75
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.42 E-value=0.0084 Score=27.92 Aligned_cols=13 Identities=62% Similarity=0.882 Sum_probs=5.1
Q ss_pred CCCeEeCCCcccc
Q 042011 3 SLRILDVSSNQLT 15 (361)
Q Consensus 3 ~L~~L~L~~n~i~ 15 (361)
+|+.|++++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 4555555555544
No 76
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.01 E-value=0.00013 Score=68.41 Aligned_cols=182 Identities=23% Similarity=0.231 Sum_probs=108.1
Q ss_pred ccEEEecCCcccCCcChHH---HhcCCCCcEEEecCCcccCCC----CCCcCCC-CCcCEEEccCCcCCccC----Chhh
Q 042011 106 LALVDLSHIKMNGEFPTWL---LENNTKLETLFLVNDSLTGPF----RLPIHSH-RWLEFLDISNNNFRCHI----PVEI 173 (361)
Q Consensus 106 L~~L~l~~n~l~~~~~~~~---~~~~~~L~~L~l~~n~l~~~~----~~~~~~l-~~L~~L~l~~n~l~~~~----~~~~ 173 (361)
+..+.+.+|.+.......+ +...+.|+.|++++|.+.... ...+... +.+++|++..+.+++.. ...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 7788888888874333222 455678888888888876321 1222222 45677777777776432 2333
Q ss_pred hccCCCccEEEecCCcccc----ccCcc----ccCCCCCCEEeccCCcCcccc----chhhhhCCCC-CcEEEeecCCCC
Q 042011 174 GDILPSLKFFNISMNALDG----SIPSS----FGNMNFLRVLDLSNNQLTGEI----PEHLAVGCVN-LESLALSNNSLE 240 (361)
Q Consensus 174 ~~~l~~L~~L~L~~n~l~~----~~~~~----l~~~~~L~~L~l~~n~l~~~~----~~~~~~~~~~-L~~L~L~~n~l~ 240 (361)
.. .+.++.++++.|.+.. .++.. +....++++|.+.+|.++... ...+. ..+. +..+++..|.+.
T Consensus 169 ~~-~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~-~~~~~~~el~l~~n~l~ 246 (478)
T KOG4308|consen 169 EK-NEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLA-SGESLLRELDLASNKLG 246 (478)
T ss_pred hc-ccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHh-ccchhhHHHHHHhcCcc
Confidence 33 5677788888887741 12222 234667788888888776211 11121 2333 566778888776
Q ss_pred Cc----ccccccCC-CCCCEEeccCCcCCccc----hhhhhcCCCCCEEECcCCcccc
Q 042011 241 GH----MFSRNFNL-TNLEWLQLGGNRFVGEI----PQSLSKCSSLEGLYLNNNSLSG 289 (361)
Q Consensus 241 ~~----~~~~~~~~-~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~l~~N~l~~ 289 (361)
+. ....+..+ ..++.++++.|.|+... ...+..++.++.+.++.|.+.+
T Consensus 247 d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 247 DVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred hHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 43 22233334 56677888888777543 3445556777788888777765
No 77
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=94.08 E-value=0.041 Score=28.74 Aligned_cols=22 Identities=32% Similarity=0.498 Sum_probs=15.4
Q ss_pred cCCCCeEeCcCCcccccCCcccc
Q 042011 26 LTSIEELMLSNNHFQIPISLEPL 48 (361)
Q Consensus 26 l~~L~~L~Ls~n~l~~~~~~~~~ 48 (361)
+++|++|+|++|+++ .+|...|
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00370 1 LPNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHHHc
Confidence 457788888888887 6665544
No 78
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=94.08 E-value=0.041 Score=28.74 Aligned_cols=22 Identities=32% Similarity=0.498 Sum_probs=15.4
Q ss_pred cCCCCeEeCcCCcccccCCcccc
Q 042011 26 LTSIEELMLSNNHFQIPISLEPL 48 (361)
Q Consensus 26 l~~L~~L~Ls~n~l~~~~~~~~~ 48 (361)
+++|++|+|++|+++ .+|...|
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00369 1 LPNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHHHc
Confidence 457788888888887 6665544
No 79
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.86 E-value=0.00056 Score=64.28 Aligned_cols=39 Identities=23% Similarity=0.161 Sum_probs=17.1
Q ss_pred CcEEEccCCCccccccccc-ccccCcccccEEeccCCCCCC
Q 042011 54 LKIFYADNNELNAEITQSH-SLIAPNFQLNSLSLSSDYGDG 93 (361)
Q Consensus 54 L~~L~l~~n~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~ 93 (361)
+..+.+.+|.+.......+ ..+.....|+.|++ +.|.+.
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l-~~n~l~ 128 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDL-SGNNLG 128 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhc-ccCCCc
Confidence 5556666665543221111 11222335555555 444444
No 80
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.16 E-value=0.002 Score=53.39 Aligned_cols=85 Identities=19% Similarity=0.108 Sum_probs=67.1
Q ss_pred CCCCCcEEEeecCCCCCcccccccCCCCCCEEeccCCcCCccchhhhhcCCCCCEEECcCCcccccCCCCCCCcCcceee
Q 042011 225 GCVNLESLALSNNSLEGHMFSRNFNLTNLEWLQLGGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGNVNVPSSPANTLFNL 304 (361)
Q Consensus 225 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~L~~l 304 (361)
.....+.||++.|++.. ....|..++.+..++++.|++. ..|+.+++...++.+++..|..+ ..|.++...++++++
T Consensus 40 ~~kr~tvld~~s~r~vn-~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 40 SFKRVTVLDLSSNRLVN-LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKN 116 (326)
T ss_pred ccceeeeehhhhhHHHh-hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchh
Confidence 45667788888887754 3445556677888888888888 78888888888888888888887 577788888999999
Q ss_pred cccccccc
Q 042011 305 SQNSRRFT 312 (361)
Q Consensus 305 ~l~~N~~~ 312 (361)
++.+|.|.
T Consensus 117 e~k~~~~~ 124 (326)
T KOG0473|consen 117 EQKKTEFF 124 (326)
T ss_pred hhccCcch
Confidence 88888764
No 81
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.08 E-value=0.041 Score=44.78 Aligned_cols=34 Identities=12% Similarity=0.132 Sum_probs=16.2
Q ss_pred CccEEEecCCccccccCccccCCCCCCEEeccCC
Q 042011 179 SLKFFNISMNALDGSIPSSFGNMNFLRVLDLSNN 212 (361)
Q Consensus 179 ~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n 212 (361)
.++.++-++..|...--..+.+++.++.|.+.+|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~c 135 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANC 135 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccc
Confidence 3455555555554333334444455555555444
No 82
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=91.57 E-value=0.067 Score=27.31 Aligned_cols=18 Identities=39% Similarity=0.436 Sum_probs=8.0
Q ss_pred CCCCEEeccCCcCCccch
Q 042011 251 TNLEWLQLGGNRFVGEIP 268 (361)
Q Consensus 251 ~~L~~L~L~~n~l~~~~~ 268 (361)
++|+.|++++|+|++...
T Consensus 2 ~~L~~L~l~~n~i~~~g~ 19 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGA 19 (24)
T ss_dssp TT-SEEE-TSSBEHHHHH
T ss_pred CCCCEEEccCCcCCHHHH
Confidence 445555555555544333
No 83
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.38 E-value=0.024 Score=46.04 Aligned_cols=81 Identities=26% Similarity=0.243 Sum_probs=39.5
Q ss_pred CCCEEeccCCcCccccchhhhhCCCCCcEEEeecCCC-CCccccccc-CCCCCCEEeccCC-cCCccchhhhhcCCCCCE
Q 042011 203 FLRVLDLSNNQLTGEIPEHLAVGCVNLESLALSNNSL-EGHMFSRNF-NLTNLEWLQLGGN-RFVGEIPQSLSKCSSLEG 279 (361)
Q Consensus 203 ~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l-~~~~~~~~~-~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~ 279 (361)
.++.++.++..|..+--..+. +++.++.|.+.+|.- .....+.++ -.++|+.|++++| +|++..-..+..+++|+.
T Consensus 102 ~IeaVDAsds~I~~eGle~L~-~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~ 180 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLR-DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR 180 (221)
T ss_pred eEEEEecCCchHHHHHHHHHh-ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence 355556665555433333333 555556665555531 111111111 2356666666655 455555555555666666
Q ss_pred EECcC
Q 042011 280 LYLNN 284 (361)
Q Consensus 280 L~l~~ 284 (361)
|++.+
T Consensus 181 L~l~~ 185 (221)
T KOG3864|consen 181 LHLYD 185 (221)
T ss_pred HHhcC
Confidence 65554
No 84
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=89.12 E-value=0.16 Score=56.55 Aligned_cols=45 Identities=13% Similarity=0.087 Sum_probs=36.4
Q ss_pred ECcCCcccccCCCCCCCcCcceeeccccccccCCccccccccccc
Q 042011 281 YLNNNSLSGNVNVPSSPANTLFNLSQNSRRFTSSISHSHLLNLHG 325 (361)
Q Consensus 281 ~l~~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~~~~~~~~~~~ 325 (361)
||++|+|+...+..|..+++|+.|+|.+|+|.|+|...+|..|..
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~L~WL~~WL~ 45 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGLARLPRWAE 45 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccccccccHHHHHHHH
Confidence 578888887777778888888888888899988888877777643
No 85
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=88.41 E-value=0.37 Score=25.18 Aligned_cols=14 Identities=43% Similarity=0.624 Sum_probs=7.4
Q ss_pred CCCCeEeCCCcccc
Q 042011 2 TSLRILDVSSNQLT 15 (361)
Q Consensus 2 ~~L~~L~L~~n~i~ 15 (361)
++|+.|+++.|+|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 44555555555554
No 86
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=87.94 E-value=0.015 Score=48.32 Aligned_cols=85 Identities=15% Similarity=0.080 Sum_probs=37.1
Q ss_pred hcCCCCccEEEecCCcccCCcChHHHhcCCCCcEEEecCCcccCCCCCCcCCCCCcCEEEccCCcCCccCChhhhccCCC
Q 042011 100 LYHQHDLALVDLSHIKMNGEFPTWLLENNTKLETLFLVNDSLTGPFRLPIHSHRWLEFLDISNNNFRCHIPVEIGDILPS 179 (361)
Q Consensus 100 l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 179 (361)
+....+.+.||++.|++. ..... |+.++.+..|+++.|.+. ..|..+.....++.++...|..+ ..|..... .|.
T Consensus 38 i~~~kr~tvld~~s~r~v-n~~~n-~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k-~~~ 112 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLV-NLGKN-FSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKK-EPH 112 (326)
T ss_pred hhccceeeeehhhhhHHH-hhccc-hHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccc-cCC
Confidence 444455555555555543 22222 333444444444444443 23444444444444444444443 44444333 444
Q ss_pred ccEEEecCCc
Q 042011 180 LKFFNISMNA 189 (361)
Q Consensus 180 L~~L~L~~n~ 189 (361)
++.+++-.+.
T Consensus 113 ~k~~e~k~~~ 122 (326)
T KOG0473|consen 113 PKKNEQKKTE 122 (326)
T ss_pred cchhhhccCc
Confidence 4444444443
No 87
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=84.33 E-value=0.68 Score=24.12 Aligned_cols=17 Identities=59% Similarity=0.735 Sum_probs=9.1
Q ss_pred CCCeEeCCCccccCcCCh
Q 042011 3 SLRILDVSSNQLTGSISS 20 (361)
Q Consensus 3 ~L~~L~L~~n~i~~~i~~ 20 (361)
+|+.|++++|+++ .+|+
T Consensus 3 ~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLT-SLPE 19 (26)
T ss_pred ccceeecCCCccc-cCcc
Confidence 4555555555555 5554
No 88
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=82.92 E-value=9.5 Score=35.64 Aligned_cols=58 Identities=14% Similarity=0.139 Sum_probs=30.7
Q ss_pred CCEEeccCCcCCccch---hhhhcCCCCCEEECcCCcccc----cCCCCCCCcCcceeecccccc
Q 042011 253 LEWLQLGGNRFVGEIP---QSLSKCSSLEGLYLNNNSLSG----NVNVPSSPANTLFNLSQNSRR 310 (361)
Q Consensus 253 L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~l~~N~l~~----~~~~~~~~~~~L~~l~l~~N~ 310 (361)
+..+.++.|.+....- .....-+.+.++++++|...+ .+|.......++..+..+.|.
T Consensus 415 l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~ 479 (553)
T KOG4242|consen 415 LAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNL 479 (553)
T ss_pred ccCcccCCCcccccHHHHHHhhccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCC
Confidence 5566666666652211 122334567777777776543 334444445555555555443
No 89
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=78.58 E-value=1.7 Score=41.07 Aligned_cols=63 Identities=32% Similarity=0.283 Sum_probs=35.3
Q ss_pred CCCCCCEEeccCCcCccccc--hhhhhCCCCCcEEEeecC--CCCCccccccc--CCCCCCEEeccCCcCCc
Q 042011 200 NMNFLRVLDLSNNQLTGEIP--EHLAVGCVNLESLALSNN--SLEGHMFSRNF--NLTNLEWLQLGGNRFVG 265 (361)
Q Consensus 200 ~~~~L~~L~l~~n~l~~~~~--~~~~~~~~~L~~L~L~~n--~l~~~~~~~~~--~~~~L~~L~L~~n~l~~ 265 (361)
+.+.+..+++++|++. .+. ..+....|+|+.|+|++| .+.. ...+. +...|++|.+.+|++..
T Consensus 216 n~p~i~sl~lsnNrL~-~Ld~~sslsq~apklk~L~LS~N~~~~~~--~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLY-HLDALSSLSQIAPKLKTLDLSHNHSKISS--ESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred CCcceeeeecccchhh-chhhhhHHHHhcchhheeecccchhhhcc--hhhhhhhcCCCHHHeeecCCcccc
Confidence 3456666677777665 332 123335667777777777 3332 11222 23456777777777664
No 90
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=77.10 E-value=1.9 Score=22.87 Aligned_cols=14 Identities=29% Similarity=0.382 Sum_probs=7.9
Q ss_pred CCCEEeccCCcCCc
Q 042011 252 NLEWLQLGGNRFVG 265 (361)
Q Consensus 252 ~L~~L~L~~n~l~~ 265 (361)
+|++|+|++|.+..
T Consensus 3 ~L~~LdL~~N~i~~ 16 (28)
T smart00368 3 SLRELDLSNNKLGD 16 (28)
T ss_pred ccCEEECCCCCCCH
Confidence 45556666665543
No 91
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=73.20 E-value=2.3 Score=40.22 Aligned_cols=67 Identities=31% Similarity=0.311 Sum_probs=43.5
Q ss_pred hhhhCCCCCcEEEeecCCCCCc--ccccccCCCCCCEEeccCC--cCCccchhhhhc--CCCCCEEECcCCcccc
Q 042011 221 HLAVGCVNLESLALSNNSLEGH--MFSRNFNLTNLEWLQLGGN--RFVGEIPQSLSK--CSSLEGLYLNNNSLSG 289 (361)
Q Consensus 221 ~~~~~~~~L~~L~L~~n~l~~~--~~~~~~~~~~L~~L~L~~n--~l~~~~~~~~~~--l~~L~~L~l~~N~l~~ 289 (361)
....+.+.+..++|++|++... ........|+|+.|+|++| .+.. ..++.+ ...|++|-+.+|.+..
T Consensus 212 ~~~~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~--~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 212 HIEENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISS--ESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred HhhcCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcc--hhhhhhhcCCCHHHeeecCCcccc
Confidence 3344677888889999987642 1222335688999999998 4432 222222 2468888889988864
No 92
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=69.91 E-value=26 Score=32.86 Aligned_cols=59 Identities=24% Similarity=0.262 Sum_probs=26.6
Q ss_pred CcEEEeecCCCCCccccc---ccCCCCCCEEeccCCcCCcc----chhhhhcCCCCCEEECcCCcc
Q 042011 229 LESLALSNNSLEGHMFSR---NFNLTNLEWLQLGGNRFVGE----IPQSLSKCSSLEGLYLNNNSL 287 (361)
Q Consensus 229 L~~L~L~~n~l~~~~~~~---~~~~~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~N~l 287 (361)
+..+.++.|......... ...-+.+..|++++|..... +|.....-..++.+..+.|..
T Consensus 415 l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~p 480 (553)
T KOG4242|consen 415 LAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNLP 480 (553)
T ss_pred ccCcccCCCcccccHHHHHHhhccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCCc
Confidence 445555555544321111 12334556666666654432 233333334555555555544
No 93
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=54.95 E-value=8.6 Score=19.73 Aligned_cols=11 Identities=36% Similarity=0.413 Sum_probs=5.7
Q ss_pred CCCCeEeCcCC
Q 042011 27 TSIEELMLSNN 37 (361)
Q Consensus 27 ~~L~~L~Ls~n 37 (361)
++|++|+|++|
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 44555555554
No 94
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=50.93 E-value=11 Score=43.15 Aligned_cols=32 Identities=31% Similarity=0.551 Sum_probs=27.9
Q ss_pred eCCCccccCcCChhhhhccCCCCeEeCcCCccc
Q 042011 8 DVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQ 40 (361)
Q Consensus 8 ~L~~n~i~~~i~~~~~~~l~~L~~L~Ls~n~l~ 40 (361)
||++|+|+ .||...|..+++|++|+|++|.+.
T Consensus 1 DLSnN~Ls-tLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKIS-TIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCC-ccChHHhccCCCceEEEeeCCccc
Confidence 68899998 888889999999999999998664
Done!