Query 042011
Match_columns 361
No_of_seqs 312 out of 3156
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 22:40:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042011.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042011hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 5E-42 1.7E-46 341.3 25.7 311 1-318 317-723 (768)
2 3v47_A TOLL-like receptor 5B a 100.0 1E-41 3.5E-46 320.0 24.8 316 2-323 30-420 (455)
3 3rgz_A Protein brassinosteroid 100.0 3E-41 1E-45 335.7 24.6 325 1-330 293-713 (768)
4 2id5_A Lingo-1, leucine rich r 100.0 9.3E-40 3.2E-44 308.5 24.3 312 2-322 32-343 (477)
5 3t6q_A CD180 antigen; protein- 100.0 2.3E-38 8E-43 307.5 23.0 313 3-324 255-572 (606)
6 2z7x_B TOLL-like receptor 1, v 100.0 2.4E-37 8.1E-42 295.1 26.8 294 2-312 21-457 (520)
7 2id5_A Lingo-1, leucine rich r 100.0 1.2E-37 4.2E-42 293.9 24.3 330 5-351 14-343 (477)
8 4eco_A Uncharacterized protein 100.0 2.6E-38 8.8E-43 308.1 20.0 320 1-332 205-598 (636)
9 3t6q_A CD180 antigen; protein- 100.0 8.9E-37 3E-41 296.4 28.2 305 2-315 57-441 (606)
10 3vq2_A TLR4, TOLL-like recepto 100.0 6.1E-37 2.1E-41 297.6 26.0 176 147-324 393-570 (606)
11 3vq2_A TLR4, TOLL-like recepto 100.0 1.4E-37 4.8E-42 302.1 19.3 188 152-346 349-563 (606)
12 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.5E-36 5.1E-41 292.2 26.1 295 2-313 52-487 (562)
13 4g8a_A TOLL-like receptor 4; l 100.0 1.7E-36 5.8E-41 295.7 26.1 315 3-324 53-592 (635)
14 3o6n_A APL1; leucine-rich repe 100.0 1.7E-36 6E-41 278.8 24.4 302 1-323 44-363 (390)
15 1ziw_A TOLL-like receptor 3; i 100.0 2.8E-36 9.5E-41 296.7 25.2 315 3-325 249-636 (680)
16 4eco_A Uncharacterized protein 100.0 1.5E-36 5.2E-41 295.6 22.7 296 2-314 273-602 (636)
17 2z63_A TOLL-like receptor 4, v 100.0 1.8E-36 6.2E-41 292.1 22.8 168 151-320 345-539 (570)
18 4ecn_A Leucine-rich repeat pro 100.0 1E-36 3.5E-41 302.6 20.3 319 1-333 447-839 (876)
19 1ziw_A TOLL-like receptor 3; i 100.0 4.7E-36 1.6E-40 295.1 22.4 312 2-317 222-602 (680)
20 3v47_A TOLL-like receptor 5B a 100.0 6.2E-36 2.1E-40 280.6 21.8 286 1-292 53-412 (455)
21 2z7x_B TOLL-like receptor 1, v 100.0 1.3E-35 4.4E-40 283.1 23.5 293 5-317 3-438 (520)
22 4fmz_A Internalin; leucine ric 100.0 7.1E-35 2.4E-39 263.8 27.0 298 1-328 43-340 (347)
23 3j0a_A TOLL-like receptor 5; m 100.0 1.3E-35 4.5E-40 298.0 24.1 305 2-313 24-376 (844)
24 3oja_B Anopheles plasmodium-re 100.0 2.2E-35 7.5E-40 285.7 24.8 300 2-323 51-369 (597)
25 4fmz_A Internalin; leucine ric 100.0 2.5E-34 8.6E-39 260.2 29.5 282 1-312 65-346 (347)
26 2z81_A CD282 antigen, TOLL-lik 100.0 3.3E-35 1.1E-39 282.1 24.8 162 150-323 358-522 (549)
27 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 4.6E-35 1.6E-39 281.8 25.0 294 3-316 32-466 (562)
28 2z63_A TOLL-like receptor 4, v 100.0 2.6E-35 8.8E-40 284.0 23.3 141 176-316 345-511 (570)
29 4ecn_A Leucine-rich repeat pro 100.0 3.7E-35 1.3E-39 291.5 23.7 302 1-316 490-844 (876)
30 2z81_A CD282 antigen, TOLL-lik 100.0 2.3E-35 8E-40 283.1 20.1 303 2-313 26-424 (549)
31 1xku_A Decorin; proteoglycan, 100.0 9E-34 3.1E-38 254.8 26.5 289 3-310 32-330 (330)
32 2ft3_A Biglycan; proteoglycan, 100.0 5.8E-34 2E-38 256.3 22.5 267 28-312 34-307 (332)
33 1o6v_A Internalin A; bacterial 100.0 4.7E-33 1.6E-37 261.7 28.4 282 2-313 68-389 (466)
34 3j0a_A TOLL-like receptor 5; m 100.0 2.2E-33 7.5E-38 281.9 27.7 303 1-313 47-395 (844)
35 1ogq_A PGIP-2, polygalacturona 100.0 2.5E-34 8.7E-39 256.3 17.8 255 52-316 50-308 (313)
36 3o6n_A APL1; leucine-rich repe 100.0 1.5E-33 5.1E-38 259.2 22.5 304 25-353 43-364 (390)
37 1ogq_A PGIP-2, polygalacturona 100.0 4.2E-34 1.5E-38 254.8 15.2 252 27-289 50-306 (313)
38 1xku_A Decorin; proteoglycan, 100.0 3.9E-32 1.3E-36 244.1 27.1 269 2-286 52-330 (330)
39 1o6v_A Internalin A; bacterial 100.0 4E-32 1.4E-36 255.4 27.3 281 2-313 46-345 (466)
40 3oja_B Anopheles plasmodium-re 100.0 1.3E-32 4.5E-37 266.3 22.4 303 25-352 49-369 (597)
41 2z80_A TOLL-like receptor 2, v 100.0 2.1E-32 7.3E-37 248.1 22.4 289 24-323 28-326 (353)
42 3bz5_A Internalin-J, INLJ; leu 100.0 6.7E-32 2.3E-36 252.5 26.0 276 1-313 41-353 (457)
43 4g8a_A TOLL-like receptor 4; l 100.0 2.2E-32 7.6E-37 266.6 23.7 328 6-348 35-587 (635)
44 2ft3_A Biglycan; proteoglycan, 100.0 5.3E-32 1.8E-36 243.5 22.4 288 3-310 34-331 (332)
45 3bz5_A Internalin-J, INLJ; leu 100.0 1.5E-30 5E-35 243.4 25.7 291 1-323 63-398 (457)
46 3zyj_A Leucine-rich repeat-con 100.0 9E-31 3.1E-35 244.4 23.4 238 80-323 65-303 (440)
47 3zyi_A Leucine-rich repeat-con 100.0 1.6E-30 5.4E-35 243.6 23.0 258 54-323 56-314 (452)
48 2z66_A Variable lymphocyte rec 100.0 1.1E-30 3.7E-35 232.2 20.3 258 30-323 10-272 (306)
49 2z66_A Variable lymphocyte rec 100.0 4.2E-31 1.4E-35 234.9 17.0 278 5-317 10-292 (306)
50 2z80_A TOLL-like receptor 2, v 100.0 7.7E-31 2.6E-35 237.9 17.5 279 2-291 31-317 (353)
51 1z7x_W Ribonuclease inhibitor; 100.0 6.7E-33 2.3E-37 260.4 0.4 311 2-314 56-413 (461)
52 1jl5_A Outer protein YOPM; leu 100.0 5.7E-29 2E-33 232.4 25.9 250 27-313 131-410 (454)
53 1ozn_A Reticulon 4 receptor; N 100.0 1.7E-29 5.7E-34 222.2 18.7 251 55-316 14-265 (285)
54 4fcg_A Uncharacterized protein 100.0 3.8E-29 1.3E-33 224.1 21.3 223 27-286 81-312 (328)
55 1ozn_A Reticulon 4 receptor; N 100.0 1.7E-29 5.7E-34 222.3 17.8 254 5-295 14-268 (285)
56 3zyj_A Leucine-rich repeat-con 100.0 1.1E-28 3.8E-33 230.3 23.8 248 29-288 45-292 (440)
57 3o53_A Protein LRIM1, AGAP0063 100.0 1.2E-30 4E-35 233.1 9.7 258 4-283 12-270 (317)
58 3zyi_A Leucine-rich repeat-con 100.0 1.7E-28 5.8E-33 229.8 23.9 248 29-288 56-303 (452)
59 4fcg_A Uncharacterized protein 100.0 4.9E-29 1.7E-33 223.4 18.6 227 79-313 81-315 (328)
60 3g06_A SSPH2 (leucine-rich rep 100.0 2.9E-28 9.8E-33 234.7 24.9 262 3-317 41-302 (622)
61 1jl5_A Outer protein YOPM; leu 100.0 3.5E-29 1.2E-33 233.9 17.6 247 2-288 11-270 (454)
62 1z7x_W Ribonuclease inhibitor; 100.0 3.2E-31 1.1E-35 248.9 0.5 307 3-313 4-384 (461)
63 1wwl_A Monocyte differentiatio 100.0 3.3E-30 1.1E-34 229.7 5.6 205 102-313 93-310 (312)
64 3o53_A Protein LRIM1, AGAP0063 100.0 5.8E-29 2E-33 222.1 11.7 239 29-312 12-250 (317)
65 1wwl_A Monocyte differentiatio 100.0 9.3E-30 3.2E-34 226.7 5.8 254 23-289 39-310 (312)
66 2o6q_A Variable lymphocyte rec 100.0 2.6E-27 8.7E-32 206.6 20.9 214 104-323 16-230 (270)
67 1p9a_G Platelet glycoprotein I 100.0 2.1E-27 7.1E-32 209.1 17.5 214 100-323 6-219 (290)
68 2z62_A TOLL-like receptor 4, v 99.9 7.6E-27 2.6E-31 204.3 17.4 216 104-323 28-249 (276)
69 3g06_A SSPH2 (leucine-rich rep 99.9 6.2E-26 2.1E-30 218.4 25.2 244 2-295 61-304 (622)
70 3oja_A Leucine-rich immune mol 99.9 2.1E-27 7E-32 224.0 14.6 234 53-307 35-270 (487)
71 3oja_A Leucine-rich immune mol 99.9 1.6E-27 5.4E-32 224.8 13.5 236 27-283 34-270 (487)
72 2z62_A TOLL-like receptor 4, v 99.9 1.4E-25 4.9E-30 196.1 17.5 223 6-241 11-238 (276)
73 2o6q_A Variable lymphocyte rec 99.9 8.8E-25 3E-29 190.5 21.2 183 104-289 37-219 (270)
74 3rfs_A Internalin B, repeat mo 99.9 3E-25 1E-29 193.6 18.1 204 100-317 37-240 (272)
75 3rfs_A Internalin B, repeat mo 99.9 7.3E-26 2.5E-30 197.5 12.3 210 49-276 38-247 (272)
76 3goz_A Leucine-rich repeat-con 99.9 4.9E-26 1.7E-30 206.9 9.0 260 6-290 2-299 (362)
77 2ca6_A RAN GTPase-activating p 99.9 4.8E-26 1.6E-30 208.8 8.1 260 10-291 17-319 (386)
78 3ogk_B Coronatine-insensitive 99.9 1.5E-26 5.1E-31 223.9 4.5 305 1-314 163-528 (592)
79 1p9a_G Platelet glycoprotein I 99.9 4.3E-24 1.5E-28 187.9 19.8 201 23-238 6-206 (290)
80 4glp_A Monocyte differentiatio 99.9 1.6E-24 5.4E-29 192.7 16.6 204 103-313 90-308 (310)
81 3m19_A Variable lymphocyte rec 99.9 5.2E-24 1.8E-28 183.6 18.4 180 105-314 15-194 (251)
82 4glp_A Monocyte differentiatio 99.9 5.7E-25 2E-29 195.6 11.2 232 50-289 62-308 (310)
83 2ca6_A RAN GTPase-activating p 99.9 1.9E-26 6.4E-31 211.5 1.1 246 46-316 26-320 (386)
84 2xwt_C Thyrotropin receptor; s 99.9 2.9E-24 9.8E-29 183.8 13.8 196 105-309 32-236 (239)
85 3ogk_B Coronatine-insensitive 99.9 6.2E-26 2.1E-30 219.5 3.5 305 4-314 140-503 (592)
86 1h6u_A Internalin H; cell adhe 99.9 1.4E-23 4.7E-28 186.3 18.1 192 78-289 40-231 (308)
87 3goz_A Leucine-rich repeat-con 99.9 4.2E-25 1.4E-29 200.7 8.2 260 31-316 2-301 (362)
88 2xwt_C Thyrotropin receptor; s 99.9 7.4E-24 2.5E-28 181.2 13.4 196 81-286 33-237 (239)
89 2ast_B S-phase kinase-associat 99.9 1.2E-24 4.1E-29 195.7 8.6 211 80-297 94-315 (336)
90 3m19_A Variable lymphocyte rec 99.9 6E-23 2.1E-27 176.9 18.4 180 80-266 15-194 (251)
91 2ast_B S-phase kinase-associat 99.9 9.7E-25 3.3E-29 196.3 6.9 252 52-318 47-312 (336)
92 1h6u_A Internalin H; cell adhe 99.9 1.1E-22 3.6E-27 180.6 18.8 208 8-242 25-232 (308)
93 2p1m_B Transport inhibitor res 99.9 5.6E-25 1.9E-29 212.8 -0.2 306 1-312 104-494 (594)
94 4ay9_X Follicle-stimulating ho 99.9 2E-22 6.8E-27 182.2 16.0 242 5-261 12-256 (350)
95 2v70_A SLIT-2, SLIT homolog 2 99.9 3.1E-22 1E-26 168.8 14.6 165 155-324 13-178 (220)
96 2p1m_B Transport inhibitor res 99.9 2.4E-24 8.3E-29 208.4 1.9 304 1-312 129-519 (594)
97 2v9t_B SLIT homolog 2 protein 99.9 5.6E-22 1.9E-26 167.2 14.9 163 156-323 14-176 (220)
98 4ay9_X Follicle-stimulating ho 99.9 7.8E-22 2.7E-26 178.3 15.7 200 30-241 12-216 (350)
99 3e6j_A Variable lymphocyte rec 99.9 3E-21 1E-25 163.8 15.7 164 154-323 20-184 (229)
100 2o6s_A Variable lymphocyte rec 99.9 2.8E-21 9.5E-26 161.6 14.6 180 107-299 10-189 (208)
101 2xot_A Amphoterin-induced prot 99.8 2.7E-21 9.1E-26 175.5 11.7 162 155-318 41-208 (361)
102 2o6s_A Variable lymphocyte rec 99.8 4.6E-20 1.6E-24 154.2 16.4 175 131-317 9-183 (208)
103 1h6t_A Internalin B; cell adhe 99.8 2.4E-20 8.1E-25 164.1 15.4 175 100-291 42-216 (291)
104 1h6t_A Internalin B; cell adhe 99.8 3.8E-20 1.3E-24 162.8 16.3 191 105-314 25-215 (291)
105 3cvr_A Invasion plasmid antige 99.8 7.3E-20 2.5E-24 174.2 18.4 187 28-250 60-253 (571)
106 1m9s_A Internalin B; cell inva 99.8 5.6E-20 1.9E-24 176.8 16.2 169 78-264 42-210 (605)
107 2v9t_B SLIT homolog 2 protein 99.8 1E-19 3.6E-24 153.3 15.6 153 132-289 14-166 (220)
108 3cvr_A Invasion plasmid antige 99.8 1E-19 3.6E-24 173.2 17.4 187 53-274 60-253 (571)
109 2xot_A Amphoterin-induced prot 99.8 5.2E-20 1.8E-24 167.0 14.6 157 105-264 40-202 (361)
110 2v70_A SLIT-2, SLIT homolog 2 99.8 2.1E-19 7.1E-24 151.4 16.1 155 132-290 14-168 (220)
111 3sb4_A Hypothetical leucine ri 99.8 1.1E-19 3.8E-24 162.7 12.4 267 1-282 48-328 (329)
112 3e6j_A Variable lymphocyte rec 99.8 5.6E-19 1.9E-23 149.7 15.8 155 105-266 20-174 (229)
113 1xeu_A Internalin C; cellular 99.8 5.7E-20 2E-24 159.2 9.7 171 102-290 17-187 (263)
114 1m9s_A Internalin B; cell inva 99.8 2.5E-19 8.7E-24 172.2 15.1 200 80-299 22-221 (605)
115 3sb4_A Hypothetical leucine ri 99.8 9.5E-21 3.3E-25 169.7 4.8 263 25-305 23-327 (329)
116 4ezg_A Putative uncharacterize 99.8 3.3E-19 1.1E-23 147.6 12.6 153 126-288 41-194 (197)
117 4ezg_A Putative uncharacterize 99.8 7.6E-19 2.6E-23 145.4 14.2 154 150-313 41-195 (197)
118 1w8a_A SLIT protein; signaling 99.8 4.4E-19 1.5E-23 146.2 12.0 138 181-322 11-149 (192)
119 4fdw_A Leucine rich hypothetic 99.8 1.3E-17 4.4E-22 152.7 21.1 270 23-312 109-383 (401)
120 2wfh_A SLIT homolog 2 protein 99.8 1.9E-18 6.4E-23 142.4 13.4 139 181-324 13-151 (193)
121 1dce_A Protein (RAB geranylger 99.8 1.1E-21 3.7E-26 187.5 -7.0 210 24-258 346-567 (567)
122 1xeu_A Internalin C; cellular 99.8 4.9E-19 1.7E-23 153.3 10.3 169 79-266 19-187 (263)
123 4fdw_A Leucine rich hypothetic 99.8 2.1E-17 7.1E-22 151.4 20.4 247 48-314 109-360 (401)
124 1dce_A Protein (RAB geranylger 99.8 1.3E-20 4.4E-25 180.2 -4.0 196 101-305 346-566 (567)
125 2o6r_A Variable lymphocyte rec 99.7 3.2E-17 1.1E-21 133.2 12.7 132 181-316 10-141 (177)
126 4b8c_D Glucose-repressible alc 99.7 2.8E-18 9.6E-23 168.8 5.8 182 95-288 215-404 (727)
127 1w8a_A SLIT protein; signaling 99.7 5.6E-17 1.9E-21 133.5 12.5 129 156-289 11-140 (192)
128 2ell_A Acidic leucine-rich nuc 99.7 8.1E-17 2.8E-21 129.6 12.8 133 153-289 24-161 (168)
129 2ell_A Acidic leucine-rich nuc 99.7 4E-17 1.4E-21 131.4 9.7 135 177-314 23-162 (168)
130 2wfh_A SLIT homolog 2 protein 99.7 1.3E-16 4.4E-21 131.4 12.9 128 156-289 13-140 (193)
131 2o6r_A Variable lymphocyte rec 99.7 2.3E-16 7.8E-21 128.1 13.3 132 155-291 9-140 (177)
132 4b8c_D Glucose-repressible alc 99.7 5E-17 1.7E-21 160.0 9.9 117 125-247 220-336 (727)
133 2je0_A Acidic leucine-rich nuc 99.7 1.7E-16 5.7E-21 125.1 10.8 127 153-283 17-148 (149)
134 4fs7_A Uncharacterized protein 99.7 1.4E-15 4.7E-20 139.5 18.0 203 96-309 154-376 (394)
135 2je0_A Acidic leucine-rich nuc 99.7 6.8E-17 2.3E-21 127.3 7.7 129 177-308 16-149 (149)
136 1a9n_A U2A', U2A'; complex (nu 99.6 5.8E-16 2E-20 125.5 10.3 134 149-288 15-153 (176)
137 3g39_A Variable lymphocyte rec 99.6 9E-16 3.1E-20 123.6 10.2 117 203-323 10-127 (170)
138 1a9n_A U2A', U2A'; complex (nu 99.6 2.5E-15 8.4E-20 121.8 10.0 134 100-240 15-153 (176)
139 2r9u_A Variable lymphocyte rec 99.6 2.9E-15 1E-19 121.0 10.2 116 204-323 14-130 (174)
140 1ds9_A Outer arm dynein; leuci 99.6 1.6E-17 5.5E-22 137.5 -3.6 108 177-290 47-155 (198)
141 1ds9_A Outer arm dynein; leuci 99.6 1E-17 3.4E-22 138.7 -5.3 156 125-289 14-186 (198)
142 4gt6_A Cell surface protein; l 99.6 1.2E-13 4.1E-18 126.6 19.6 112 195-311 258-369 (394)
143 4fs7_A Uncharacterized protein 99.6 6E-14 2.1E-18 128.6 17.4 286 14-323 59-365 (394)
144 3g39_A Variable lymphocyte rec 99.5 1.1E-13 3.7E-18 111.4 11.0 105 155-264 11-115 (170)
145 4gt6_A Cell surface protein; l 99.5 1.7E-12 5.9E-17 118.8 19.1 130 173-310 260-389 (394)
146 2r9u_A Variable lymphocyte rec 99.5 2.1E-13 7.2E-18 110.1 11.1 104 156-264 15-118 (174)
147 2ifg_A High affinity nerve gro 99.5 1.6E-13 5.5E-18 123.5 10.2 115 206-324 12-128 (347)
148 3un9_A NLR family member X1; l 99.5 6.2E-15 2.1E-19 133.6 0.8 183 129-312 72-283 (372)
149 4h09_A Hypothetical leucine ri 99.4 9.1E-11 3.1E-15 106.8 21.5 283 4-308 48-342 (379)
150 3un9_A NLR family member X1; l 99.4 2.8E-14 9.5E-19 129.4 -2.2 159 129-288 101-283 (372)
151 4h09_A Hypothetical leucine ri 99.3 2.9E-10 1E-14 103.4 21.6 280 1-301 68-358 (379)
152 2ifg_A High affinity nerve gro 99.3 3.5E-12 1.2E-16 114.7 7.4 105 156-265 11-117 (347)
153 2ra8_A Uncharacterized protein 99.1 4.3E-10 1.5E-14 101.1 12.5 181 100-286 135-341 (362)
154 2ra8_A Uncharacterized protein 99.0 8.5E-10 2.9E-14 99.2 7.8 160 126-289 136-321 (362)
155 1io0_A Tropomodulin; LRR prote 98.7 7.7E-09 2.6E-13 84.0 5.0 111 177-288 35-164 (185)
156 1io0_A Tropomodulin; LRR prote 98.6 9.6E-09 3.3E-13 83.4 1.8 120 193-313 27-165 (185)
157 3rw6_A Nuclear RNA export fact 98.4 4.4E-08 1.5E-12 83.7 1.4 39 226-264 169-209 (267)
158 3rw6_A Nuclear RNA export fact 98.4 4E-07 1.4E-11 77.8 6.1 99 7-111 148-258 (267)
159 3e4g_A ATP synthase subunit S, 98.3 5.1E-07 1.8E-11 71.6 5.1 84 178-262 61-150 (176)
160 3e4g_A ATP synthase subunit S, 98.2 7.2E-07 2.5E-11 70.8 4.3 84 202-286 61-150 (176)
161 3rfe_A Platelet glycoprotein I 98.0 6.8E-06 2.3E-10 62.2 4.4 69 254-324 11-80 (130)
162 1pgv_A TMD-1, tropomodulin TMD 97.7 3.9E-05 1.3E-09 62.0 5.7 18 198-215 66-83 (197)
163 1pgv_A TMD-1, tropomodulin TMD 97.5 3.1E-05 1.1E-09 62.5 2.4 116 24-142 38-170 (197)
164 3rfe_A Platelet glycoprotein I 96.9 0.0023 7.8E-08 48.1 6.5 55 231-288 12-68 (130)
165 2lz0_A Uncharacterized protein 89.1 0.4 1.4E-05 33.7 3.8 49 11-62 5-53 (100)
166 2lz0_A Uncharacterized protein 72.1 9.5 0.00032 26.5 5.7 45 239-284 8-52 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=5e-42 Score=341.33 Aligned_cols=311 Identities=28% Similarity=0.359 Sum_probs=255.8
Q ss_pred CCCCCeEeCCCccccCcCChhhhhccCCCCeEeCcCCcccccCCcccccC---------------------------CCC
Q 042011 1 MTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFN---------------------------HSR 53 (361)
Q Consensus 1 l~~L~~L~L~~n~i~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~---------------------------l~~ 53 (361)
+++|++|++++|++++.+|...+.++++|++|++++|++++.+| ..+.. +++
T Consensus 317 l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~ 395 (768)
T 3rgz_A 317 CSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELP-ESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNT 395 (768)
T ss_dssp CTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCC-TTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCC
T ss_pred CCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCcccc-HHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCC
Confidence 35666777777766666666456666666666666666665555 23433 344
Q ss_pred CcEEEccCCCcccccccccccccCcccccEEeccCCCCCCCCCchhhcCCCCccEEEecCCcccCCcChHHHhcCCCCcE
Q 042011 54 LKIFYADNNELNAEITQSHSLIAPNFQLNSLSLSSDYGDGFIFPKFLYHQHDLALVDLSHIKMNGEFPTWLLENNTKLET 133 (361)
Q Consensus 54 L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~ 133 (361)
|++|++++|.+++..+.. +..+.+|++|++ ++|.+.+..|..+..+++|+.|++++|.+++.+|.. +..+++|++
T Consensus 396 L~~L~L~~n~l~~~~p~~---l~~l~~L~~L~L-s~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~ 470 (768)
T 3rgz_A 396 LQELYLQNNGFTGKIPPT---LSNCSELVSLHL-SFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQE-LMYVKTLET 470 (768)
T ss_dssp CCEEECCSSEEEEECCGG---GGGCTTCCEEEC-CSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGG-GGGCTTCCE
T ss_pred ccEEECCCCccccccCHH---HhcCCCCCEEEC-cCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHH-HcCCCCceE
Confidence 555555555555444333 455668888888 888888788888888888888888888888778777 778899999
Q ss_pred EEecCCcccCCCCCCcCCCCCcCEEEccCCcCCccCChhhhccCCCccEEEecCCccccccCccccCCCCCCEEeccCCc
Q 042011 134 LFLVNDSLTGPFRLPIHSHRWLEFLDISNNNFRCHIPVEIGDILPSLKFFNISMNALDGSIPSSFGNMNFLRVLDLSNNQ 213 (361)
Q Consensus 134 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~ 213 (361)
|++++|++.+..|..+..+++|++|++++|++++.+|.++.. +++|++|++++|.+++.+|..+..+++|++|++++|.
T Consensus 471 L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~-l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 549 (768)
T 3rgz_A 471 LILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR-LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL 549 (768)
T ss_dssp EECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGG-CTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSE
T ss_pred EEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhc-CCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCc
Confidence 999999998888888999999999999999998888888776 8999999999999998999999999999999999999
Q ss_pred Cccccchhhhh---------------------------------------------------------------------
Q 042011 214 LTGEIPEHLAV--------------------------------------------------------------------- 224 (361)
Q Consensus 214 l~~~~~~~~~~--------------------------------------------------------------------- 224 (361)
+.|.+|..++.
T Consensus 550 l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~ 629 (768)
T 3rgz_A 550 FNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFD 629 (768)
T ss_dssp EESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCS
T ss_pred cCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhh
Confidence 98888866542
Q ss_pred CCCCCcEEEeecCCCCCcccccccCCCCCCEEeccCCcCCccchhhhhcCCCCCEEECcCCcccccCCCCCCCcCcceee
Q 042011 225 GCVNLESLALSNNSLEGHMFSRNFNLTNLEWLQLGGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGNVNVPSSPANTLFNL 304 (361)
Q Consensus 225 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~L~~l 304 (361)
.+++|+.|++++|++++.+|..++.+++|+.|++++|++++.+|..++.+++|+.||+++|++++.+|..+..++.|++|
T Consensus 630 ~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L 709 (768)
T 3rgz_A 630 NNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEI 709 (768)
T ss_dssp SSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEE
T ss_pred ccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEE
Confidence 23578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCcccc
Q 042011 305 SQNSRRFTSSISHS 318 (361)
Q Consensus 305 ~l~~N~~~~~~~~~ 318 (361)
++++|+++|.+|..
T Consensus 710 ~ls~N~l~g~iP~~ 723 (768)
T 3rgz_A 710 DLSNNNLSGPIPEM 723 (768)
T ss_dssp ECCSSEEEEECCSS
T ss_pred ECcCCcccccCCCc
Confidence 99999999999854
No 2
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1e-41 Score=320.00 Aligned_cols=316 Identities=19% Similarity=0.152 Sum_probs=268.4
Q ss_pred CCCCeEeCCCccccCcCChhhhhccCCCCeEeCcCCcccccCCcccccCCCCCcEEEccCCCcccccccccccccCcccc
Q 042011 2 TSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLIAPNFQL 81 (361)
Q Consensus 2 ~~L~~L~L~~n~i~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L 81 (361)
++|++|+|++|.+++..|. .|.++++|++|++++|.+.+.++...|.++++|++|++++|.+++..+.. +..+.+|
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~---~~~l~~L 105 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNET-SFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGA---FNGLANL 105 (455)
T ss_dssp TTCCEEECCSSCCCEECTT-TTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTT---TTTCTTC
T ss_pred CccCEEEecCCccCcCChh-HhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhh---ccCcccC
Confidence 5789999999999844455 89999999999999999976776678999999999999999998776655 5667799
Q ss_pred cEEeccCCCCCCCCCchh--hcCCCCccEEEecCCcccCCcChHHHhcCCCCcEEEecCCcccCCCCCCcCCC-------
Q 042011 82 NSLSLSSDYGDGFIFPKF--LYHQHDLALVDLSHIKMNGEFPTWLLENNTKLETLFLVNDSLTGPFRLPIHSH------- 152 (361)
Q Consensus 82 ~~L~l~~~~~~~~~~~~~--l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l------- 152 (361)
++|++ ++|.+++..+.. +..+++|++|++++|.+++..|..++.++++|++|++++|.+.+..+..+..+
T Consensus 106 ~~L~L-~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~ 184 (455)
T 3v47_A 106 EVLTL-TQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTL 184 (455)
T ss_dssp CEEEC-TTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEE
T ss_pred CEEeC-CCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccc
Confidence 99999 999988754444 88999999999999999976677668899999999999999987766655443
Q ss_pred ---------------------------CCcCEEEccCCcCCccCChhhhcc-----------------------------
Q 042011 153 ---------------------------RWLEFLDISNNNFRCHIPVEIGDI----------------------------- 176 (361)
Q Consensus 153 ---------------------------~~L~~L~l~~n~l~~~~~~~~~~~----------------------------- 176 (361)
++|++|++++|++++..|..+...
T Consensus 185 L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 264 (455)
T 3v47_A 185 LRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDP 264 (455)
T ss_dssp EECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCC
T ss_pred cccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccC
Confidence 578888888888765444433221
Q ss_pred ---------CCCccEEEecCCccccccCccccCCCCCCEEeccCCcCccccchhhhhCCCCCcEEEeecCCCCCcccccc
Q 042011 177 ---------LPSLKFFNISMNALDGSIPSSFGNMNFLRVLDLSNNQLTGEIPEHLAVGCVNLESLALSNNSLEGHMFSRN 247 (361)
Q Consensus 177 ---------l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~ 247 (361)
.++|++|++++|.+++..+..+..+++|++|++++|.+. .++...+..+++|++|++++|.+++..+..+
T Consensus 265 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 343 (455)
T 3v47_A 265 DNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFLGSIDSRMF 343 (455)
T ss_dssp CTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCEECGGGG
T ss_pred cccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCccc-ccChhHhcCcccCCEEECCCCccCCcChhHh
Confidence 257899999999998888889999999999999999999 5544444489999999999999999888899
Q ss_pred cCCCCCCEEeccCCcCCccchhhhhcCCCCCEEECcCCcccccCCCCCCCcCcceeeccccccccCCcc-ccccccc
Q 042011 248 FNLTNLEWLQLGGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGNVNVPSSPANTLFNLSQNSRRFTSSIS-HSHLLNL 323 (361)
Q Consensus 248 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~~-~~~~~~~ 323 (361)
..+++|+.|++++|++++..|..|..+++|++|++++|++++..+..+..+++|++|++++|+++|.+| ..++..|
T Consensus 344 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~ 420 (455)
T 3v47_A 344 ENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRW 420 (455)
T ss_dssp TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHHHHH
T ss_pred cCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcchHHHHH
Confidence 999999999999999998889999999999999999999998777788999999999999999999998 3445444
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=3e-41 Score=335.75 Aligned_cols=325 Identities=26% Similarity=0.353 Sum_probs=276.6
Q ss_pred CCCCCeEeCCCccccCcCChhhhhccCCCCeEeCcCCcccccCCcccccCCCCCcEEEccCCCccccccccccccc----
Q 042011 1 MTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLIA---- 76 (361)
Q Consensus 1 l~~L~~L~L~~n~i~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~---- 76 (361)
+++|++|++++|++++.+|. .|.++++|++|++++|++++.+|...+.++++|++|++++|.+++..+..+....
T Consensus 293 ~~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~ 371 (768)
T 3rgz_A 293 CDTLTGLDLSGNHFYGAVPP-FFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLL 371 (768)
T ss_dssp CTTCSEEECCSSEEEECCCG-GGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCS
T ss_pred cCcCCEEECcCCcCCCccch-HHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCc
Confidence 37889999999999877887 8999999999999999998788865688999999999999988765554322111
Q ss_pred ------------------C--cccccEEeccCCCCCCCCCchhhcCCCCccEEEecCCcccCCcChHHHhcCCCCcEEEe
Q 042011 77 ------------------P--NFQLNSLSLSSDYGDGFIFPKFLYHQHDLALVDLSHIKMNGEFPTWLLENNTKLETLFL 136 (361)
Q Consensus 77 ------------------~--~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l 136 (361)
. ..+|++|++ ++|.+++..|..+..+++|++|++++|.+++.+|.. +..+++|++|++
T Consensus 372 ~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L-~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~L 449 (768)
T 3rgz_A 372 TLDLSSNNFSGPILPNLCQNPKNTLQELYL-QNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSS-LGSLSKLRDLKL 449 (768)
T ss_dssp EEECCSSEEEEECCTTTTCSTTCCCCEEEC-CSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGG-GGGCTTCCEEEC
T ss_pred EEEccCCCcCCCcChhhhhcccCCccEEEC-CCCccccccCHHHhcCCCCCEEECcCCcccCcccHH-HhcCCCCCEEEC
Confidence 1 346778888 777777778888999999999999999998888877 788999999999
Q ss_pred cCCcccCCCCCCcCCCCCcCEEEccCCcCCccCChhhhccCCCccEEEecCCccccccCccccCCCCCCEEeccCCcCcc
Q 042011 137 VNDSLTGPFRLPIHSHRWLEFLDISNNNFRCHIPVEIGDILPSLKFFNISMNALDGSIPSSFGNMNFLRVLDLSNNQLTG 216 (361)
Q Consensus 137 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~ 216 (361)
++|.+.+..|..+..+++|++|++++|++++.+|..+.. +++|++|++++|.+++.+|..++.+++|++|++++|.+.+
T Consensus 450 ~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~-l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 528 (768)
T 3rgz_A 450 WLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSN-CTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSG 528 (768)
T ss_dssp CSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGG-CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEE
T ss_pred CCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhc-CCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccC
Confidence 999999888999999999999999999999788877766 8999999999999998999999999999999999999998
Q ss_pred ccchhhhhCCCCCcEEEeecCCCCCccccc--------------------------------------------------
Q 042011 217 EIPEHLAVGCVNLESLALSNNSLEGHMFSR-------------------------------------------------- 246 (361)
Q Consensus 217 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~-------------------------------------------------- 246 (361)
.+|..+. .+++|++|++++|++.+..|..
T Consensus 529 ~~p~~l~-~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 607 (768)
T 3rgz_A 529 NIPAELG-DCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRL 607 (768)
T ss_dssp ECCGGGG-GCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGG
T ss_pred cCCHHHc-CCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhcc
Confidence 8888876 7999999999999887554433
Q ss_pred --------------------ccCCCCCCEEeccCCcCCccchhhhhcCCCCCEEECcCCcccccCCCCCCCcCcceeecc
Q 042011 247 --------------------NFNLTNLEWLQLGGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGNVNVPSSPANTLFNLSQ 306 (361)
Q Consensus 247 --------------------~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~L~~l~l 306 (361)
+..+++|+.|++++|++++.+|..++.+++|+.|++++|++++.+|..+..+++|+.|++
T Consensus 608 ~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdL 687 (768)
T 3rgz_A 608 STRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDL 687 (768)
T ss_dssp GGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEEC
T ss_pred ccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEEC
Confidence 334578999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCcccc--cccccccchhhh
Q 042011 307 NSRRFTSSISHS--HLLNLHGICKEY 330 (361)
Q Consensus 307 ~~N~~~~~~~~~--~~~~~~~~~~~~ 330 (361)
++|++++.+|.. .+..+..+...+
T Consensus 688 s~N~l~g~ip~~l~~l~~L~~L~ls~ 713 (768)
T 3rgz_A 688 SSNKLDGRIPQAMSALTMLTEIDLSN 713 (768)
T ss_dssp CSSCCEECCCGGGGGCCCCSEEECCS
T ss_pred CCCcccCcCChHHhCCCCCCEEECcC
Confidence 999999999853 334444444333
No 4
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=9.3e-40 Score=308.47 Aligned_cols=312 Identities=19% Similarity=0.119 Sum_probs=270.9
Q ss_pred CCCCeEeCCCccccCcCChhhhhccCCCCeEeCcCCcccccCCcccccCCCCCcEEEccCCCcccccccccccccCcccc
Q 042011 2 TSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLIAPNFQL 81 (361)
Q Consensus 2 ~~L~~L~L~~n~i~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L 81 (361)
++++.|+|++|+++ .++...|.++++|++|+|++|.+++..+ .+|.++++|++|++++|.++...+.. +..+.+|
T Consensus 32 ~~l~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~---~~~l~~L 106 (477)
T 2id5_A 32 TETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSAVEP-GAFNNLFNLRTLGLRSNRLKLIPLGV---FTGLSNL 106 (477)
T ss_dssp TTCSEEECCSSCCC-EECTTTTTTCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECCSSCCCSCCTTS---STTCTTC
T ss_pred CCCcEEECCCCccc-eECHhHccCCCCCCEEECCCCccCEeCh-hhhhCCccCCEEECCCCcCCccCccc---ccCCCCC
Confidence 46899999999998 5544489999999999999999984445 68999999999999999988655444 4567799
Q ss_pred cEEeccCCCCCCCCCchhhcCCCCccEEEecCCcccCCcChHHHhcCCCCcEEEecCCcccCCCCCCcCCCCCcCEEEcc
Q 042011 82 NSLSLSSDYGDGFIFPKFLYHQHDLALVDLSHIKMNGEFPTWLLENNTKLETLFLVNDSLTGPFRLPIHSHRWLEFLDIS 161 (361)
Q Consensus 82 ~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 161 (361)
++|++ ++|.+....+..|..+++|++|++++|.+++..+.. +.++++|++|++++|++.+..+..+..+++|+.|+++
T Consensus 107 ~~L~L-s~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 184 (477)
T 2id5_A 107 TKLDI-SENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRA-FSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLR 184 (477)
T ss_dssp CEEEC-TTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTS-STTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEE
T ss_pred CEEEC-CCCccccCChhHccccccCCEEECCCCccceeChhh-ccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCC
Confidence 99999 999998888888999999999999999998444444 7889999999999999987767778899999999999
Q ss_pred CCcCCccCChhhhccCCCccEEEecCCccccccCccccCCCCCCEEeccCCcCccccchhhhhCCCCCcEEEeecCCCCC
Q 042011 162 NNNFRCHIPVEIGDILPSLKFFNISMNALDGSIPSSFGNMNFLRVLDLSNNQLTGEIPEHLAVGCVNLESLALSNNSLEG 241 (361)
Q Consensus 162 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~ 241 (361)
+|.+. .++...+..+++|+.|++++|...+.++.......+|++|++++|.++ .+|...+..+++|+.|++++|.+++
T Consensus 185 ~n~i~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~ 262 (477)
T 2id5_A 185 HLNIN-AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPIST 262 (477)
T ss_dssp SCCCC-EECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCC-SCCHHHHTTCTTCCEEECCSSCCCE
T ss_pred CCcCc-EeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCccc-ccCHHHhcCccccCeeECCCCcCCc
Confidence 99998 555555556899999999998877677776667779999999999999 8887666789999999999999999
Q ss_pred cccccccCCCCCCEEeccCCcCCccchhhhhcCCCCCEEECcCCcccccCCCCCCCcCcceeeccccccccCCccccccc
Q 042011 242 HMFSRNFNLTNLEWLQLGGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGNVNVPSSPANTLFNLSQNSRRFTSSISHSHLL 321 (361)
Q Consensus 242 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~~~~~~~ 321 (361)
..+..+..+++|+.|++++|++++..+..|..+++|+.|++++|++++..+..|..+++|++|++++|++.|+++..|+.
T Consensus 263 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~ 342 (477)
T 2id5_A 263 IEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVF 342 (477)
T ss_dssp ECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHH
T ss_pred cChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHhHH
Confidence 88888999999999999999999888999999999999999999999887788899999999999999999998876654
Q ss_pred c
Q 042011 322 N 322 (361)
Q Consensus 322 ~ 322 (361)
.
T Consensus 343 ~ 343 (477)
T 2id5_A 343 R 343 (477)
T ss_dssp T
T ss_pred h
Confidence 4
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=2.3e-38 Score=307.53 Aligned_cols=313 Identities=20% Similarity=0.178 Sum_probs=275.0
Q ss_pred CCCeEeCCCccccCcCChhhhhccCCCCeEeCcCCcccccCCcccccCCCCCcEEEccCCCcccccccccccccCccccc
Q 042011 3 SLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLIAPNFQLN 82 (361)
Q Consensus 3 ~L~~L~L~~n~i~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~ 82 (361)
+|+.|++++|.++ .++...|..+++|++|++++|+++ .+| ..+.++++|++|++++|.+.+..+.. +..+.+|+
T Consensus 255 ~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~-~lp-~~l~~l~~L~~L~l~~n~l~~~~~~~---~~~l~~L~ 328 (606)
T 3t6q_A 255 SVESINLQKHYFF-NISSNTFHCFSGLQELDLTATHLS-ELP-SGLVGLSTLKKLVLSANKFENLCQIS---ASNFPSLT 328 (606)
T ss_dssp EEEEEECTTCCCS-SCCTTTTTTCTTCSEEECTTSCCS-CCC-SSCCSCTTCCEEECTTCCCSBGGGGC---GGGCTTCS
T ss_pred ceeEEEeecCccC-ccCHHHhccccCCCEEeccCCccC-CCC-hhhcccccCCEEECccCCcCcCchhh---hhccCcCC
Confidence 5789999999998 666658999999999999999998 788 57899999999999999998766654 56677999
Q ss_pred EEeccCCCCCCCCC-chhhcCCCCccEEEecCCcccCCc--ChHHHhcCCCCcEEEecCCcccCCCCCCcCCCCCcCEEE
Q 042011 83 SLSLSSDYGDGFIF-PKFLYHQHDLALVDLSHIKMNGEF--PTWLLENNTKLETLFLVNDSLTGPFRLPIHSHRWLEFLD 159 (361)
Q Consensus 83 ~L~l~~~~~~~~~~-~~~l~~l~~L~~L~l~~n~l~~~~--~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 159 (361)
+|++ ++|.+.+.. +..+..+++|++|++++|.+++.. +.. +..+++|++|++++|++.+..+..+..+++|++|+
T Consensus 329 ~L~l-~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 406 (606)
T 3t6q_A 329 HLSI-KGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQ-LRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLD 406 (606)
T ss_dssp EEEC-CSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTT-TTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEE
T ss_pred EEEC-CCCCcccccchhhhhccCcCCEEECCCCccccccCcchh-cccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEE
Confidence 9999 888877544 445899999999999999998443 444 78999999999999999988889999999999999
Q ss_pred ccCCcCCccCChhhhccCCCccEEEecCCccccccCccccCCCCCCEEeccCCcCccc-cch-hhhhCCCCCcEEEeecC
Q 042011 160 ISNNNFRCHIPVEIGDILPSLKFFNISMNALDGSIPSSFGNMNFLRVLDLSNNQLTGE-IPE-HLAVGCVNLESLALSNN 237 (361)
Q Consensus 160 l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~-~~~-~~~~~~~~L~~L~L~~n 237 (361)
+++|++++..+...+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+. ++. ..+..+++|++|++++|
T Consensus 407 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n 486 (606)
T 3t6q_A 407 LAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFC 486 (606)
T ss_dssp CTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTS
T ss_pred CCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCC
Confidence 9999998665656555689999999999999988888999999999999999999852 221 23447999999999999
Q ss_pred CCCCcccccccCCCCCCEEeccCCcCCccchhhhhcCCCCCEEECcCCcccccCCCCCCCcCcceeeccccccccCCccc
Q 042011 238 SLEGHMFSRNFNLTNLEWLQLGGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGNVNVPSSPANTLFNLSQNSRRFTSSISH 317 (361)
Q Consensus 238 ~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~~~ 317 (361)
++++..+..+..+++|+.|++++|++++..|+.+..+++| .|++++|++++.+|..+..+++|+.+++++|++.|.++.
T Consensus 487 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 565 (606)
T 3t6q_A 487 DLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSN 565 (606)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGG
T ss_pred ccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCc
Confidence 9999888999999999999999999999999999999999 999999999998888889999999999999999999997
Q ss_pred ccccccc
Q 042011 318 SHLLNLH 324 (361)
Q Consensus 318 ~~~~~~~ 324 (361)
.++..|.
T Consensus 566 ~~~~~w~ 572 (606)
T 3t6q_A 566 IYFLEWY 572 (606)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776654
No 6
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.4e-37 Score=295.09 Aligned_cols=294 Identities=19% Similarity=0.193 Sum_probs=189.5
Q ss_pred CCCCeEeCCCccccCcCChhhhhccCCCCeEeCcCCcccccCCcccccCCCCCcEEEccCCCcccccccccccccCcccc
Q 042011 2 TSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLIAPNFQL 81 (361)
Q Consensus 2 ~~L~~L~L~~n~i~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L 81 (361)
++|++|++++|+++ .++...|.++++|++|+|++|++++..| ..|.++++|++|++++|.++.. +.. .+.+|
T Consensus 21 ~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~l-p~~-----~l~~L 92 (520)
T 2z7x_B 21 QKTTILNISQNYIS-ELWTSDILSLSKLRILIISHNRIQYLDI-SVFKFNQELEYLDLSHNKLVKI-SCH-----PTVNL 92 (520)
T ss_dssp TTCSEEECCSSCCC-CCCHHHHTTCTTCCEEECCSSCCCEEEG-GGGTTCTTCCEEECCSSCCCEE-ECC-----CCCCC
T ss_pred ccccEEECCCCccc-ccChhhccccccccEEecCCCccCCcCh-HHhhcccCCCEEecCCCceeec-Ccc-----ccCCc
Confidence 57899999999998 6665589999999999999999984445 6899999999999999999853 222 56799
Q ss_pred cEEeccCCCCCCC-CCchhhcCCCCccEEEecCCcccCCcChHHHhcCCCC--cEEEecCCcc--cCCCCCCcCCCC---
Q 042011 82 NSLSLSSDYGDGF-IFPKFLYHQHDLALVDLSHIKMNGEFPTWLLENNTKL--ETLFLVNDSL--TGPFRLPIHSHR--- 153 (361)
Q Consensus 82 ~~L~l~~~~~~~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L--~~L~l~~n~l--~~~~~~~~~~l~--- 153 (361)
++|++ ++|.+++ ..|..++.+++|++|++++|.+++. . +..+++| ++|++++|.+ .+..|..+..+.
T Consensus 93 ~~L~L-~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~---~-~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~ 167 (520)
T 2z7x_B 93 KHLDL-SFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS---S-VLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTES 167 (520)
T ss_dssp SEEEC-CSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGG---G-GGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEE
T ss_pred cEEec-cCCccccccchhhhccCCcceEEEecCcccchh---h-ccccccceeeEEEeecccccccccccccccccccce
Confidence 99999 8888886 4678899999999999999887631 1 3444444 5555555554 222222222211
Q ss_pred --------------------------------------------------------------------------------
Q 042011 154 -------------------------------------------------------------------------------- 153 (361)
Q Consensus 154 -------------------------------------------------------------------------------- 153 (361)
T Consensus 168 l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~ 247 (520)
T 2z7x_B 168 LHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHT 247 (520)
T ss_dssp EEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTS
T ss_pred EEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhC
Confidence
Q ss_pred CcCEEEccCCcCCccCChhh----------------------------------------------------hccCCCcc
Q 042011 154 WLEFLDISNNNFRCHIPVEI----------------------------------------------------GDILPSLK 181 (361)
Q Consensus 154 ~L~~L~l~~n~l~~~~~~~~----------------------------------------------------~~~l~~L~ 181 (361)
+|++|++++|++++.+|..+ ...+++|+
T Consensus 248 ~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~ 327 (520)
T 2z7x_B 248 TVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFL 327 (520)
T ss_dssp SCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCC
T ss_pred cccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhhCCccc
Confidence 34444444444433333222 03356777
Q ss_pred EEEecCCccccccCccccCCCCCCEEeccCCcCcc--ccchhhhhCCCCCcEEEeecCCCCC-cccccccCCCCCCEEec
Q 042011 182 FFNISMNALDGSIPSSFGNMNFLRVLDLSNNQLTG--EIPEHLAVGCVNLESLALSNNSLEG-HMFSRNFNLTNLEWLQL 258 (361)
Q Consensus 182 ~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~--~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~~~~~L~~L~L 258 (361)
+|++++|.+++..|..+..+++|++|++++|.+++ .+|..+ ..+++|++|++++|.+.+ .....+..+++|+.|++
T Consensus 328 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~-~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~L 406 (520)
T 2z7x_B 328 HLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMT-TQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNM 406 (520)
T ss_dssp EEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHH-TTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEEC
T ss_pred EEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHH-hhCCCCCEEECCCCcCCcccccchhccCccCCEEEC
Confidence 77777777776667777777777777777777763 223333 367777777777777766 33333555666666666
Q ss_pred cCCcCCccchhhhhcCCCCCEEECcCCcccccCCCCCCCcCcceeecccccccc
Q 042011 259 GGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGNVNVPSSPANTLFNLSQNSRRFT 312 (361)
Q Consensus 259 ~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~L~~l~l~~N~~~ 312 (361)
++|++++..|..+. ++|+.|++++|+++ .+|..+..+++|++|++++|+++
T Consensus 407 s~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~ 457 (520)
T 2z7x_B 407 SSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK 457 (520)
T ss_dssp CSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC
T ss_pred cCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC
Confidence 66666544443332 45555555555555 34443445555555555555555
No 7
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.2e-37 Score=293.93 Aligned_cols=330 Identities=17% Similarity=0.151 Sum_probs=282.9
Q ss_pred CeEeCCCccccCcCChhhhhccCCCCeEeCcCCcccccCCcccccCCCCCcEEEccCCCcccccccccccccCcccccEE
Q 042011 5 RILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLIAPNFQLNSL 84 (361)
Q Consensus 5 ~~L~L~~n~i~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L 84 (361)
+.++.++++++ .+|. .+ .+++++|+|++|+++ .++...|.++++|++|++++|.+++..+.. +..+.+|++|
T Consensus 14 ~~v~c~~~~l~-~ip~-~~--~~~l~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~---~~~l~~L~~L 85 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPE-GI--PTETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSAVEPGA---FNNLFNLRTL 85 (477)
T ss_dssp TEEECCSCCCS-SCCS-CC--CTTCSEEECCSSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTT---TTTCTTCCEE
T ss_pred CEEEeCCCCcC-cCCC-CC--CCCCcEEECCCCccc-eECHhHccCCCCCCEEECCCCccCEeChhh---hhCCccCCEE
Confidence 57888899998 8887 33 368999999999998 454478999999999999999998776655 5677899999
Q ss_pred eccCCCCCCCCCchhhcCCCCccEEEecCCcccCCcChHHHhcCCCCcEEEecCCcccCCCCCCcCCCCCcCEEEccCCc
Q 042011 85 SLSSDYGDGFIFPKFLYHQHDLALVDLSHIKMNGEFPTWLLENNTKLETLFLVNDSLTGPFRLPIHSHRWLEFLDISNNN 164 (361)
Q Consensus 85 ~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 164 (361)
++ ++|.+....+..|..+++|++|++++|.+.+..+.. +.++++|++|++++|.+.+..+..|..+++|++|++++|+
T Consensus 86 ~L-~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 163 (477)
T 2id5_A 86 GL-RSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYM-FQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCN 163 (477)
T ss_dssp EC-CSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTT-TTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCC
T ss_pred EC-CCCcCCccCcccccCCCCCCEEECCCCccccCChhH-ccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCc
Confidence 99 999999877778999999999999999998544544 8899999999999999998888899999999999999999
Q ss_pred CCccCChhhhccCCCccEEEecCCccccccCccccCCCCCCEEeccCCcCccccchhhhhCCCCCcEEEeecCCCCCccc
Q 042011 165 FRCHIPVEIGDILPSLKFFNISMNALDGSIPSSFGNMNFLRVLDLSNNQLTGEIPEHLAVGCVNLESLALSNNSLEGHMF 244 (361)
Q Consensus 165 l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 244 (361)
++ .++...+..+++|+.|++++|.+.+..+..|..+++|++|++++|...+.++...+ ...+|++|++++|++++..+
T Consensus 164 l~-~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~ 241 (477)
T 2id5_A 164 LT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCL-YGLNLTSLSITHCNLTAVPY 241 (477)
T ss_dssp CS-SCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTT-TTCCCSEEEEESSCCCSCCH
T ss_pred Cc-ccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccc-cCccccEEECcCCcccccCH
Confidence 98 77776666699999999999999987788899999999999999988778888777 56699999999999998777
Q ss_pred ccccCCCCCCEEeccCCcCCccchhhhhcCCCCCEEECcCCcccccCCCCCCCcCcceeeccccccccCCcccccccccc
Q 042011 245 SRNFNLTNLEWLQLGGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGNVNVPSSPANTLFNLSQNSRRFTSSISHSHLLNLH 324 (361)
Q Consensus 245 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~~~~~~~~~~ 324 (361)
..+..+++|+.|++++|++++..+..|..+++|+.|++++|++++..|..|..+++|++|++++|.+++..+ ..|..+.
T Consensus 242 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~ 320 (477)
T 2id5_A 242 LAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEE-SVFHSVG 320 (477)
T ss_dssp HHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCG-GGBSCGG
T ss_pred HHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCH-hHcCCCc
Confidence 789999999999999999998888889999999999999999999989999999999999999999997544 3444332
Q ss_pred cchhhhHHHhhccchHHHHHHHHHhhc
Q 042011 325 GICKEYAKEFARNMPRICEEYAAYLNS 351 (361)
Q Consensus 325 ~~~~~~~~~~~~~~~~~c~~~~~~~~~ 351 (361)
.+. .-...++|+.|+|...|+..
T Consensus 321 ~L~----~L~l~~N~l~c~c~~~~~~~ 343 (477)
T 2id5_A 321 NLE----TLILDSNPLACDCRLLWVFR 343 (477)
T ss_dssp GCC----EEECCSSCEECSGGGHHHHT
T ss_pred ccC----EEEccCCCccCccchHhHHh
Confidence 221 12235667778777666643
No 8
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=2.6e-38 Score=308.06 Aligned_cols=320 Identities=17% Similarity=0.202 Sum_probs=225.5
Q ss_pred CCCCCeEeCCCccccCc-----------------CChhhhh--ccCCCCeEeCcCCcccccCCcccccCCCCCcEEEccC
Q 042011 1 MTSLRILDVSSNQLTGS-----------------ISSSPLV--HLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFYADN 61 (361)
Q Consensus 1 l~~L~~L~L~~n~i~~~-----------------i~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~ 61 (361)
+++|++|+|++|.+++. +|. .+. ++++|++|++++|++.+.+| ..+.++++|++|++++
T Consensus 205 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~-~l~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~ 282 (636)
T 4eco_A 205 LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTE-DLKWDNLKDLTDVEVYNCPNLTKLP-TFLKALPEMQLINVAC 282 (636)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS-CCCGGGCTTCCEEEEECCTTCSSCC-TTTTTCSSCCEEECTT
T ss_pred ccCCCEEECcCCccccccccccccccccchhcccCch-hhhhcccCCCCEEEecCCcCCccCh-HHHhcCCCCCEEECcC
Confidence 57899999999999964 888 777 99999999999999988888 6899999999999999
Q ss_pred CC-ccc-ccccccccc---cCcccccEEeccCCCCCCCCCch--hhcCCCCccEEEecCCcccCCcChHHHhcCCCCcEE
Q 042011 62 NE-LNA-EITQSHSLI---APNFQLNSLSLSSDYGDGFIFPK--FLYHQHDLALVDLSHIKMNGEFPTWLLENNTKLETL 134 (361)
Q Consensus 62 n~-~~~-~~~~~~~~~---~~~~~L~~L~l~~~~~~~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L 134 (361)
|. +++ ..|..+..+ ..+.+|++|++ ++|.++ .+|. .+..+++|++|++++|.+++.+| . +..+++|++|
T Consensus 283 n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L-~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~-~~~l~~L~~L 358 (636)
T 4eco_A 283 NRGISGEQLKDDWQALADAPVGEKIQIIYI-GYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-A-FGSEIKLASL 358 (636)
T ss_dssp CTTSCHHHHHHHHHHHHHSGGGGTCCEEEC-CSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-C-CEEEEEESEE
T ss_pred CCCCccccchHHHHhhhccccCCCCCEEEC-CCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-h-hCCCCCCCEE
Confidence 98 876 555543221 22368999999 888888 6676 78888899999999998887777 3 6777788888
Q ss_pred EecCCcccCCCCCCcCCCCC-cCEEEccCCcCCccCChhhhcc-CCCccEEEecCCccccccCcccc-------CCCCCC
Q 042011 135 FLVNDSLTGPFRLPIHSHRW-LEFLDISNNNFRCHIPVEIGDI-LPSLKFFNISMNALDGSIPSSFG-------NMNFLR 205 (361)
Q Consensus 135 ~l~~n~l~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~l~-------~~~~L~ 205 (361)
++++|++. .+|..+..+++ |++|++++|+++ .+|..+... +++|++|++++|.+++..|..+. .+++|+
T Consensus 359 ~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~ 436 (636)
T 4eco_A 359 NLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVS 436 (636)
T ss_dssp ECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEE
T ss_pred ECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCC
Confidence 88888777 56666777777 777777777776 666554331 23566666666666655555554 444555
Q ss_pred EEeccCCcCccccchhhhhCCC-------------------------------CCcEEEeecCCCCCccccccc--CCCC
Q 042011 206 VLDLSNNQLTGEIPEHLAVGCV-------------------------------NLESLALSNNSLEGHMFSRNF--NLTN 252 (361)
Q Consensus 206 ~L~l~~n~l~~~~~~~~~~~~~-------------------------------~L~~L~L~~n~l~~~~~~~~~--~~~~ 252 (361)
+|++++|.++ .+|..++..++ +|++|++++|+++. +|..+. .+++
T Consensus 437 ~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~~~l~~ 514 (636)
T 4eco_A 437 SINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK-LSDDFRATTLPY 514 (636)
T ss_dssp EEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCB-CCGGGSTTTCTT
T ss_pred EEECcCCccC-cCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCc-cChhhhhccCCC
Confidence 5555555555 44444443344 45555555555553 344444 6677
Q ss_pred CCEEeccCCcCCccchhhhhcCCCCCEEEC------cCCcccccCCCCCCCcCcceeeccccccccCCcccccccccccc
Q 042011 253 LEWLQLGGNRFVGEIPQSLSKCSSLEGLYL------NNNSLSGNVNVPSSPANTLFNLSQNSRRFTSSISHSHLLNLHGI 326 (361)
Q Consensus 253 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l------~~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~~~~~~~~~~~~ 326 (361)
|+.|++++|++++ +|..+..+++|+.|++ ++|++.+.+|..+..+++|++|++++|++ +.+|...+..++.+
T Consensus 515 L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~~~L~~L 592 (636)
T 4eco_A 515 LVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKITPNISVL 592 (636)
T ss_dssp CCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCCTTCCEE
T ss_pred cCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHhCcCCEE
Confidence 7777777777775 6666777777777777 44666667777777777788888888877 45665555555555
Q ss_pred hhhhHH
Q 042011 327 CKEYAK 332 (361)
Q Consensus 327 ~~~~~~ 332 (361)
....++
T Consensus 593 ~Ls~N~ 598 (636)
T 4eco_A 593 DIKDNP 598 (636)
T ss_dssp ECCSCT
T ss_pred ECcCCC
Confidence 554443
No 9
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=8.9e-37 Score=296.42 Aligned_cols=305 Identities=19% Similarity=0.165 Sum_probs=162.5
Q ss_pred CCCCeEeCCCccccCcCChhhhhccCCCCeEeCcCCcccccCCcccccCCCCCcEEEccCCCcccccccccccccCcccc
Q 042011 2 TSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLIAPNFQL 81 (361)
Q Consensus 2 ~~L~~L~L~~n~i~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L 81 (361)
++|++|++++|++++..|. .|.++++|++|+|++|++++..+ ..|.++++|++|++++|.+++..+.. +..+.+|
T Consensus 57 ~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~i~~l~~~~---~~~l~~L 131 (606)
T 3t6q_A 57 INLTFLDLTRCQIYWIHED-TFQSQHRLDTLVLTANPLIFMAE-TALSGPKALKHLFFIQTGISSIDFIP---LHNQKTL 131 (606)
T ss_dssp TTCSEEECTTCCCCEECTT-TTTTCTTCCEEECTTCCCSEECT-TTTSSCTTCCEEECTTSCCSCGGGSC---CTTCTTC
T ss_pred ccceEEECCCCccceeChh-hccCccccCeeeCCCCcccccCh-hhhcccccccEeeccccCcccCCcch---hccCCcc
Confidence 4555555555555532233 55555555666665555553223 44555555555555555555433222 3444456
Q ss_pred cEEeccCCCCCCCCCchhhcCCCCccEEEecCCcccCCcChHHHhcCCCCc--EEEecCCcccCC---------------
Q 042011 82 NSLSLSSDYGDGFIFPKFLYHQHDLALVDLSHIKMNGEFPTWLLENNTKLE--TLFLVNDSLTGP--------------- 144 (361)
Q Consensus 82 ~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~--~L~l~~n~l~~~--------------- 144 (361)
++|++ ++|.+.+.....+..+++|++|++++|.++ .++...+..+++|+ +|++++|.+.+.
T Consensus 132 ~~L~L-~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l 209 (606)
T 3t6q_A 132 ESLYL-GSNHISSIKLPKGFPTEKLKVLDFQNNAIH-YLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNF 209 (606)
T ss_dssp CEEEC-CSSCCCCCCCCTTCCCTTCCEEECCSSCCC-EECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEEC
T ss_pred cEEEC-CCCcccccCcccccCCcccCEEEcccCccc-ccChhhhhhhcccceeEEecCCCccCccChhHhhhcccccccc
Confidence 66666 555555433233334566666666666655 23222255555555 455555544332
Q ss_pred ------------------------------------------------------------CCCCcCCCCCcCEEEccCCc
Q 042011 145 ------------------------------------------------------------FRLPIHSHRWLEFLDISNNN 164 (361)
Q Consensus 145 ------------------------------------------------------------~~~~~~~l~~L~~L~l~~n~ 164 (361)
.+..|..+++|++|++++|.
T Consensus 210 ~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 289 (606)
T 3t6q_A 210 GGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATH 289 (606)
T ss_dssp TTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSC
T ss_pred CCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCc
Confidence 22234455566666666666
Q ss_pred CCccCChhhhccCCCccEEEecCCccccccCccccCCCCCCEEeccCCcCccccchhhhhCCCCCcEEEeecCCCCCcc-
Q 042011 165 FRCHIPVEIGDILPSLKFFNISMNALDGSIPSSFGNMNFLRVLDLSNNQLTGEIPEHLAVGCVNLESLALSNNSLEGHM- 243 (361)
Q Consensus 165 l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~- 243 (361)
++ .+|..+.. +++|++|++++|.+++..+..+..+++|++|++++|.+.+.++...+..+++|++|++++|.+++..
T Consensus 290 l~-~lp~~l~~-l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 367 (606)
T 3t6q_A 290 LS-ELPSGLVG-LSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDC 367 (606)
T ss_dssp CS-CCCSSCCS-CTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEE
T ss_pred cC-CCChhhcc-cccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccC
Confidence 65 55555443 5666666666666654445555555566666666655554454443335556666666666555433
Q ss_pred -cccccCCCCCCEEeccCCcCCccchhhhhcCCCCCEEECcCCcccccCCC-CCCCcCcceeeccccccccCCc
Q 042011 244 -FSRNFNLTNLEWLQLGGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGNVNV-PSSPANTLFNLSQNSRRFTSSI 315 (361)
Q Consensus 244 -~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~-~~~~~~~L~~l~l~~N~~~~~~ 315 (361)
+..+..+++|+.|++++|++.+..+..+..+++|++|++++|++++..+. .+..+++|++|++++|.+++..
T Consensus 368 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 441 (606)
T 3t6q_A 368 CNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISS 441 (606)
T ss_dssp STTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTC
T ss_pred cchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcC
Confidence 44455555666666666655555555555555555555555555544332 2455555555555555554433
No 10
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=6.1e-37 Score=297.58 Aligned_cols=176 Identities=16% Similarity=0.141 Sum_probs=119.4
Q ss_pred CCcCCCCCcCEEEccCCcCCccCChhhhccCCCccEEEecCCccccccCccccCCCCCCEEeccCCcCccc-cchhhhhC
Q 042011 147 LPIHSHRWLEFLDISNNNFRCHIPVEIGDILPSLKFFNISMNALDGSIPSSFGNMNFLRVLDLSNNQLTGE-IPEHLAVG 225 (361)
Q Consensus 147 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~-~~~~~~~~ 225 (361)
..+..+++|++|++++|++.+..+...+..+++|++|++++|.+++..|..+..+++|++|++++|.+.+. +|..+ ..
T Consensus 393 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~ 471 (606)
T 3vq2_A 393 ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVF-AN 471 (606)
T ss_dssp CCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCC-TT
T ss_pred hhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhh-cc
Confidence 34445555666666666655333323333466777777777777666666677777777777777777643 34433 36
Q ss_pred CCCCcEEEeecCCCCCcccccccCCCCCCEEeccCCcCCccchhhhhcCCCCCEEECcCCcccccCCCCCCCcC-cceee
Q 042011 226 CVNLESLALSNNSLEGHMFSRNFNLTNLEWLQLGGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGNVNVPSSPAN-TLFNL 304 (361)
Q Consensus 226 ~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-~L~~l 304 (361)
+++|++|++++|++++..+..+..+++|+.|++++|++++..|..+..+++|+.|++++|+++ .+|..+..++ +|++|
T Consensus 472 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l 550 (606)
T 3vq2_A 472 TTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFF 550 (606)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEE
T ss_pred CCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEE
Confidence 777777788777777777777777778888888888877777777777778888888888877 3555566665 47888
Q ss_pred ccccccccCCcccccccccc
Q 042011 305 SQNSRRFTSSISHSHLLNLH 324 (361)
Q Consensus 305 ~l~~N~~~~~~~~~~~~~~~ 324 (361)
++++|++.|.++..++..|.
T Consensus 551 ~l~~N~~~c~c~~~~~~~~l 570 (606)
T 3vq2_A 551 NLTNNSVACICEHQKFLQWV 570 (606)
T ss_dssp ECCSCCCCCSSTTHHHHTTT
T ss_pred EccCCCcccCCccHHHHHHH
Confidence 88888888777766665553
No 11
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.4e-37 Score=302.07 Aligned_cols=188 Identities=20% Similarity=0.141 Sum_probs=104.5
Q ss_pred CCCcCEEEccCCcCCcc--CChhhhccCCCccEEEecCCccc-----------------------cccC-ccccCCCCCC
Q 042011 152 HRWLEFLDISNNNFRCH--IPVEIGDILPSLKFFNISMNALD-----------------------GSIP-SSFGNMNFLR 205 (361)
Q Consensus 152 l~~L~~L~l~~n~l~~~--~~~~~~~~l~~L~~L~L~~n~l~-----------------------~~~~-~~l~~~~~L~ 205 (361)
+++|++|++++|.+++. ++..+.. +++|++|++++|.++ +..+ ..+..+++|+
T Consensus 349 l~~L~~L~ls~n~l~~~~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 427 (606)
T 3vq2_A 349 LPSLSYLDLSRNALSFSGCCSYSDLG-TNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLL 427 (606)
T ss_dssp CTTCCEEECCSSCEEEEEECCHHHHC-CSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCC
T ss_pred CCCCCEEECcCCccCCCcchhhhhcc-CCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCC
Confidence 34555555555555422 1333332 555556666555554 3333 3444455555
Q ss_pred EEeccCCcCccccchhhhhCCCCCcEEEeecCCCCC-cccccccCCCCCCEEeccCCcCCccchhhhhcCCCCCEEECcC
Q 042011 206 VLDLSNNQLTGEIPEHLAVGCVNLESLALSNNSLEG-HMFSRNFNLTNLEWLQLGGNRFVGEIPQSLSKCSSLEGLYLNN 284 (361)
Q Consensus 206 ~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 284 (361)
+|++++|.+.+..|..+. .+++|++|++++|++.+ ..+..+..+++|+.|++++|++++..|..+..+++|++|++++
T Consensus 428 ~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 506 (606)
T 3vq2_A 428 YLDISYTNTKIDFDGIFL-GLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSH 506 (606)
T ss_dssp EEECTTSCCEECCTTTTT-TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred EEECcCCCCCccchhhhc-CCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCC
Confidence 555555555533333332 55666666666666655 3455666667777777777777766666677777777777777
Q ss_pred CcccccCCCCCCCcCcceeeccccccccCCcccccccccccchhhhHHHhhccchHHHHHHH
Q 042011 285 NSLSGNVNVPSSPANTLFNLSQNSRRFTSSISHSHLLNLHGICKEYAKEFARNMPRICEEYA 346 (361)
Q Consensus 285 N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~ 346 (361)
|++++..|..+..+++|++|++++|++++ +|.. +..+.. ....-...++|+.|+|..
T Consensus 507 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~p~~-~~~l~~---~L~~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 507 NNLLFLDSSHYNQLYSLSTLDCSFNRIET-SKGI-LQHFPK---SLAFFNLTNNSVACICEH 563 (606)
T ss_dssp SCCSCEEGGGTTTCTTCCEEECTTSCCCC-EESC-GGGSCT---TCCEEECCSCCCCCSSTT
T ss_pred CcCCCcCHHHccCCCcCCEEECCCCcCcc-cCHh-Hhhhcc---cCcEEEccCCCcccCCcc
Confidence 77776666677777777777777777763 3332 222210 011123355677676643
No 12
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.5e-36 Score=292.16 Aligned_cols=295 Identities=21% Similarity=0.218 Sum_probs=200.2
Q ss_pred CCCCeEeCCCccccCcCChhhhhccCCCCeEeCcCCcccccCCcccccCCCCCcEEEccCCCcccccccccccccCcccc
Q 042011 2 TSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLIAPNFQL 81 (361)
Q Consensus 2 ~~L~~L~L~~n~i~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L 81 (361)
++|++|++++|.++ .++...|.++++|++|+|++|++++ ++..+|.++++|++|++++|.++... .. .+.+|
T Consensus 52 ~~L~~L~Ls~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~lp-~~-----~l~~L 123 (562)
T 3a79_B 52 PRTKALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIRS-LDFHVFLFNQDLEYLDVSHNRLQNIS-CC-----PMASL 123 (562)
T ss_dssp TTCCEEECCSSCCC-CCCGGGTTTCTTCCEEECCSCCCCE-ECTTTTTTCTTCCEEECTTSCCCEEC-SC-----CCTTC
T ss_pred CCcCEEECCCCCcc-ccChhhhccCCCccEEECCCCCCCc-CCHHHhCCCCCCCEEECCCCcCCccC-cc-----ccccC
Confidence 57899999999998 6665589999999999999999984 44368999999999999999998532 22 56799
Q ss_pred cEEeccCCCCCCCC-CchhhcCCCCccEEEecCCcccCCcChHHHhcCCCC--cEEEecCCcc--cCCCCCCcCCCC---
Q 042011 82 NSLSLSSDYGDGFI-FPKFLYHQHDLALVDLSHIKMNGEFPTWLLENNTKL--ETLFLVNDSL--TGPFRLPIHSHR--- 153 (361)
Q Consensus 82 ~~L~l~~~~~~~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L--~~L~l~~n~l--~~~~~~~~~~l~--- 153 (361)
++|++ ++|.+... .|..|..+++|++|++++|.+++. . +..+++| ++|++++|.+ .+..+..+..+.
T Consensus 124 ~~L~L-s~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~-~---~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~ 198 (562)
T 3a79_B 124 RHLDL-SFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL-D---LLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTV 198 (562)
T ss_dssp SEEEC-CSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT-T---TGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEE
T ss_pred CEEEC-CCCCccccCchHhhcccCcccEEecCCCccccC-c---hhhhhhceeeEEEeecccccccccCcccccccCcce
Confidence 99999 88888864 467899999999999999988742 1 3444455 7777777766 433333332211
Q ss_pred ------------------------------------------------------------------------------Cc
Q 042011 154 ------------------------------------------------------------------------------WL 155 (361)
Q Consensus 154 ------------------------------------------------------------------------------~L 155 (361)
+|
T Consensus 199 l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L 278 (562)
T 3a79_B 199 LHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPV 278 (562)
T ss_dssp EEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSE
T ss_pred EEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccc
Confidence 45
Q ss_pred CEEEccCCcCCccCChhhh----------------------------------------------------ccCCCccEE
Q 042011 156 EFLDISNNNFRCHIPVEIG----------------------------------------------------DILPSLKFF 183 (361)
Q Consensus 156 ~~L~l~~n~l~~~~~~~~~----------------------------------------------------~~l~~L~~L 183 (361)
++|++++|.+++.+|..++ ..+++|++|
T Consensus 279 ~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L 358 (562)
T 3a79_B 279 EYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFL 358 (562)
T ss_dssp EEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEE
T ss_pred cEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEE
Confidence 5555555555544444331 335677777
Q ss_pred EecCCccccccCccccCCCCCCEEeccCCcCccccch--hhhhCCCCCcEEEeecCCCCC-cccccccCCCCCCEEeccC
Q 042011 184 NISMNALDGSIPSSFGNMNFLRVLDLSNNQLTGEIPE--HLAVGCVNLESLALSNNSLEG-HMFSRNFNLTNLEWLQLGG 260 (361)
Q Consensus 184 ~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~--~~~~~~~~L~~L~L~~n~l~~-~~~~~~~~~~~L~~L~L~~ 260 (361)
++++|.+++..|..+..+++|++|++++|.++ .++. ..+..+++|++|++++|++++ .....+..+++|+.|++++
T Consensus 359 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~ 437 (562)
T 3a79_B 359 NFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK-NFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSS 437 (562)
T ss_dssp ECCSSCCCTTTTTTCCSCSSCCEEECCSSCCC-BTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCS
T ss_pred ECCCCccccchhhhhcccCCCCEEECCCCCcC-CcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCC
Confidence 77777777666777777777777777777776 4332 222366777777777777766 3334456666666666666
Q ss_pred CcCCccchhhhhcCCCCCEEECcCCcccccCCCCCCCcCcceeeccccccccC
Q 042011 261 NRFVGEIPQSLSKCSSLEGLYLNNNSLSGNVNVPSSPANTLFNLSQNSRRFTS 313 (361)
Q Consensus 261 n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~ 313 (361)
|++++..|..+. ++|+.|++++|+++ .+|..+..+++|++|++++|++++
T Consensus 438 n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~ 487 (562)
T 3a79_B 438 NMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKS 487 (562)
T ss_dssp SCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCC
T ss_pred CCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCC
Confidence 666654443332 46666666666666 344444466666666666666663
No 13
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=1.7e-36 Score=295.65 Aligned_cols=315 Identities=20% Similarity=0.199 Sum_probs=232.0
Q ss_pred CCCeEeCCCccccCcCChhhhhccCCCCeEeCcCCcccccCCcccccCCCCCcEEEccCCCcccccccccccccCccccc
Q 042011 3 SLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLIAPNFQLN 82 (361)
Q Consensus 3 ~L~~L~L~~n~i~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~ 82 (361)
.+++|||++|+|+ .+|...|.++++|++|+|++|+|+ .++..+|.++++|++|+|++|++++..+.. +..+.+|+
T Consensus 53 ~~~~LdLs~N~i~-~l~~~~f~~l~~L~~L~Ls~N~i~-~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~---f~~L~~L~ 127 (635)
T 4g8a_A 53 STKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGA---FSGLSSLQ 127 (635)
T ss_dssp TCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECGGG---GTTCTTCC
T ss_pred CCCEEEeeCCCCC-CCCHHHHhCCCCCCEEECCCCcCC-CcChhHhcCCCCCCEEEccCCcCCCCCHHH---hcCCCCCC
Confidence 5789999999998 777668899999999999999888 566577888999999999999888765544 56677888
Q ss_pred EEeccCCCCCCCCCchhhcCCCCccEEEecCCcccCC-cChHHHhcCCCCcEEEecCCcccCCCCCCc------------
Q 042011 83 SLSLSSDYGDGFIFPKFLYHQHDLALVDLSHIKMNGE-FPTWLLENNTKLETLFLVNDSLTGPFRLPI------------ 149 (361)
Q Consensus 83 ~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~------------ 149 (361)
+|++ ++|.+++..+..|+.+++|++|++++|.++.. .|.. +..+++|++|++++|++.+..+..+
T Consensus 128 ~L~L-s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~ 205 (635)
T 4g8a_A 128 KLVA-VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS 205 (635)
T ss_dssp EEEC-TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCE
T ss_pred EEEC-CCCcCCCCChhhhhcCcccCeeccccCccccCCCchh-hccchhhhhhcccCccccccccccccchhhhhhhhhh
Confidence 8888 88888877777788888888888888887643 3443 6778888888887775532111100
Q ss_pred --------------------------------------------------------------------------------
Q 042011 150 -------------------------------------------------------------------------------- 149 (361)
Q Consensus 150 -------------------------------------------------------------------------------- 149 (361)
T Consensus 206 ~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~ 285 (635)
T 4g8a_A 206 LDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEE 285 (635)
T ss_dssp EECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEE
T ss_pred hhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhh
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 042011 150 -------------------------------------------------------------------------------- 149 (361)
Q Consensus 150 -------------------------------------------------------------------------------- 149 (361)
T Consensus 286 l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~ 365 (635)
T 4g8a_A 286 FRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAF 365 (635)
T ss_dssp EEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBC
T ss_pred hhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCc
Confidence
Q ss_pred --CCCCCcCEEEccCCcCCcc--C-----------------------------------------------ChhhhccCC
Q 042011 150 --HSHRWLEFLDISNNNFRCH--I-----------------------------------------------PVEIGDILP 178 (361)
Q Consensus 150 --~~l~~L~~L~l~~n~l~~~--~-----------------------------------------------~~~~~~~l~ 178 (361)
..+++|+.++++.|.+... . +...+..++
T Consensus 366 ~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~ 445 (635)
T 4g8a_A 366 SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR 445 (635)
T ss_dssp CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCT
T ss_pred ccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccccc
Confidence 0112233333333332100 0 001111233
Q ss_pred CccEEEecCCccccccCccccCCCCCCEEeccCCcCccccchhhhhCCCCCcEEEeecCCCCCcccccccCCCCCCEEec
Q 042011 179 SLKFFNISMNALDGSIPSSFGNMNFLRVLDLSNNQLTGEIPEHLAVGCVNLESLALSNNSLEGHMFSRNFNLTNLEWLQL 258 (361)
Q Consensus 179 ~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L 258 (361)
+++.++++.|.+.+..+..+..++.+++|++++|.+...++...+..+++|++|++++|++++..+..|.++++|++|+|
T Consensus 446 ~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~L 525 (635)
T 4g8a_A 446 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 525 (635)
T ss_dssp TCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEEC
Confidence 44455555555555556667777888888888887543444344457899999999999999988888999999999999
Q ss_pred cCCcCCccchhhhhcCCCCCEEECcCCcccccCCCCCCCc-CcceeeccccccccCCcccccccccc
Q 042011 259 GGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGNVNVPSSPA-NTLFNLSQNSRRFTSSISHSHLLNLH 324 (361)
Q Consensus 259 ~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~-~~L~~l~l~~N~~~~~~~~~~~~~~~ 324 (361)
++|++++..+..|.++++|+.|++++|++++..|..+..+ ++|+.|++++|+|.|+|...+|..|.
T Consensus 526 s~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~~~~~~wl 592 (635)
T 4g8a_A 526 SHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWI 592 (635)
T ss_dssp TTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGGHHHHHHH
T ss_pred CCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCcHHHHHHH
Confidence 9999998888889999999999999999999888888887 68999999999999999888877764
No 14
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=1.7e-36 Score=278.76 Aligned_cols=302 Identities=19% Similarity=0.190 Sum_probs=208.2
Q ss_pred CCCCCeEeCCCccccCcCChhhhhccCCCCeEeCcCCcccccCCcccccCCCCCcEEEccCCCcccccccccccccCccc
Q 042011 1 MTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLIAPNFQ 80 (361)
Q Consensus 1 l~~L~~L~L~~n~i~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~ 80 (361)
+++++.|++++|.++ .+|...|..+++|++|++++|+++ .++...|..+++|++|++++|.+++..+.. +..+.+
T Consensus 44 l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~---~~~l~~ 118 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHV---FQNVPL 118 (390)
T ss_dssp GCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCCCCTTT---TTTCTT
T ss_pred cCCceEEEecCCchh-hCChhHhcccccCcEEECCCCccc-ccChhhccCCCCcCEEECCCCCCCcCCHHH---hcCCCC
Confidence 367888999999887 788767888999999999999887 455467888999999999999888765554 456678
Q ss_pred ccEEeccCCCCCCCCCchhhcCCCCccEEEecCCcccCCcChHHHhcCCCCcEEEecCCcccCCCCCCcCCCCCcCEEEc
Q 042011 81 LNSLSLSSDYGDGFIFPKFLYHQHDLALVDLSHIKMNGEFPTWLLENNTKLETLFLVNDSLTGPFRLPIHSHRWLEFLDI 160 (361)
Q Consensus 81 L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 160 (361)
|++|++ ++|.+....+..|..+++|++|++++|.+++..+.. +.++++|++|++++|++++.. +..+++|+.+++
T Consensus 119 L~~L~L-~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~---~~~l~~L~~L~l 193 (390)
T 3o6n_A 119 LTVLVL-ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDT-FQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANV 193 (390)
T ss_dssp CCEEEC-CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTT-TSSCTTCCEEECCSSCCSBCC---GGGCTTCSEEEC
T ss_pred CCEEEC-CCCccCcCCHHHhcCCCCCcEEECCCCccCccChhh-ccCCCCCCEEECCCCcCCccc---cccccccceeec
Confidence 999999 888888666666788899999999999888444444 788889999999998887542 334445555555
Q ss_pred cCCcCCc------------------cCChhhhccCCCccEEEecCCccccccCccccCCCCCCEEeccCCcCccccchhh
Q 042011 161 SNNNFRC------------------HIPVEIGDILPSLKFFNISMNALDGSIPSSFGNMNFLRVLDLSNNQLTGEIPEHL 222 (361)
Q Consensus 161 ~~n~l~~------------------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~ 222 (361)
++|.+++ .++... .++|+.|++++|.+++. ..+..+++|++|++++|.+.+..|..+
T Consensus 194 ~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~ 268 (390)
T 3o6n_A 194 SYNLLSTLAIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPF 268 (390)
T ss_dssp CSSCCSEEECCSSCSEEECCSSCCCEEECCC---CSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGG
T ss_pred ccccccccCCCCcceEEECCCCeeeeccccc---cccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHc
Confidence 5544431 333221 34666666666666632 356666777777777777763334443
Q ss_pred hhCCCCCcEEEeecCCCCCcccccccCCCCCCEEeccCCcCCccchhhhhcCCCCCEEECcCCcccccCCCCCCCcCcce
Q 042011 223 AVGCVNLESLALSNNSLEGHMFSRNFNLTNLEWLQLGGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGNVNVPSSPANTLF 302 (361)
Q Consensus 223 ~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~L~ 302 (361)
. .+++|++|++++|++++ .+..+..+++|+.|++++|+++ .+|..+..+++|+.|++++|++++. + +..+++|+
T Consensus 269 ~-~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~ 342 (390)
T 3o6n_A 269 V-KMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLK 342 (390)
T ss_dssp T-TCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCS
T ss_pred c-ccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCC
Confidence 3 66777777777777765 3444556677777777777776 4555566667777777777777643 2 55566777
Q ss_pred eeccccccccCCccccccccc
Q 042011 303 NLSQNSRRFTSSISHSHLLNL 323 (361)
Q Consensus 303 ~l~l~~N~~~~~~~~~~~~~~ 323 (361)
+|++++|++.+.....++..+
T Consensus 343 ~L~l~~N~~~~~~~~~~~~~~ 363 (390)
T 3o6n_A 343 NLTLSHNDWDCNSLRALFRNV 363 (390)
T ss_dssp EEECCSSCEEHHHHHHHTTTC
T ss_pred EEEcCCCCccchhHHHHHHHH
Confidence 777777777765554444444
No 15
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=2.8e-36 Score=296.75 Aligned_cols=315 Identities=18% Similarity=0.174 Sum_probs=230.0
Q ss_pred CCCeEeCCCccccCcCChhhhhccCCCCeEeCcCCcccccCCccc---------------------------------cc
Q 042011 3 SLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEP---------------------------------LF 49 (361)
Q Consensus 3 ~L~~L~L~~n~i~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~---------------------------------~~ 49 (361)
+|++|++++|++++..|. .|..+++|++|++++|++++..+ .. |.
T Consensus 249 ~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~ 326 (680)
T 1ziw_A 249 NLTMLDLSYNNLNVVGND-SFAWLPQLEYFFLEYNNIQHLFS-HSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQ 326 (680)
T ss_dssp CCCEEECTTSCCCEECTT-TTTTCTTCCEEECCSCCBSEECT-TTTTTCTTCCEEECTTCBCCC------CCEECTTTTT
T ss_pred CCCEEECCCCCcCccCcc-cccCcccccEeeCCCCccCccCh-hhhcCCCCccEEeccchhhhcccccccccccChhhcc
Confidence 477777777777633333 67777777777777776653322 22 33
Q ss_pred CCCCCcEEEccCCCcccccccccccccCc----------------------------ccccEEeccCCCCCCCCCchhhc
Q 042011 50 NHSRLKIFYADNNELNAEITQSHSLIAPN----------------------------FQLNSLSLSSDYGDGFIFPKFLY 101 (361)
Q Consensus 50 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~~----------------------------~~L~~L~l~~~~~~~~~~~~~l~ 101 (361)
.+++|++|++++|.+.+..+.. +..+ .+|++|++ ++|.+.+..+..+.
T Consensus 327 ~l~~L~~L~l~~n~l~~~~~~~---~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L-~~n~l~~~~~~~~~ 402 (680)
T 1ziw_A 327 WLKCLEHLNMEDNDIPGIKSNM---FTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNL-TKNKISKIESDAFS 402 (680)
T ss_dssp TCTTCCEEECCSCCBCCCCTTT---TTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEEC-TTSCCCEECTTTTT
T ss_pred cCCCCCEEECCCCccCCCChhH---hccccCCcEEECCCCchhhhhcchhhhcccccCcCceEEC-CCCCCCeEChhhhh
Confidence 4455555555555555433322 1222 24555555 55666666666777
Q ss_pred CCCCccEEEecCCcccCCcChHHHhcCCCCcEEEecCCcccCCCCCCcCCCCCcCEEEccCCcCC--ccCChhhhccCCC
Q 042011 102 HQHDLALVDLSHIKMNGEFPTWLLENNTKLETLFLVNDSLTGPFRLPIHSHRWLEFLDISNNNFR--CHIPVEIGDILPS 179 (361)
Q Consensus 102 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~~l~~ 179 (361)
.+++|+.|++++|.+++.++...+.++++|++|++++|++.+..+..|..+++|+.|++++|.+. +.+|..+.. +++
T Consensus 403 ~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~-l~~ 481 (680)
T 1ziw_A 403 WLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQP-LRN 481 (680)
T ss_dssp TCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTT-CTT
T ss_pred CCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCccccc-CCC
Confidence 77888888888887776666545777888888888888877777777888888888888888765 345555554 788
Q ss_pred ccEEEecCCccccccCccccCCCCCCEEeccCCcCccccch--------hhhhCCCCCcEEEeecCCCCCcccccccCCC
Q 042011 180 LKFFNISMNALDGSIPSSFGNMNFLRVLDLSNNQLTGEIPE--------HLAVGCVNLESLALSNNSLEGHMFSRNFNLT 251 (361)
Q Consensus 180 L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~--------~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~ 251 (361)
|+.|++++|.+++..+..|..+++|++|++++|.++ .++. ..+..+++|++|++++|+++.+.+..|..++
T Consensus 482 L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~ 560 (680)
T 1ziw_A 482 LTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLA-RLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLF 560 (680)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCG-GGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred CCEEECCCCCCCcCChhhhccccccCEEeCCCCCcc-ccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHccccc
Confidence 999999999998777777888999999999999887 4322 1244788999999999999876666788999
Q ss_pred CCCEEeccCCcCCccchhhhhcCCCCCEEECcCCcccccCCCCCC-CcCcceeeccccccccCCccc-cccccccc
Q 042011 252 NLEWLQLGGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGNVNVPSS-PANTLFNLSQNSRRFTSSISH-SHLLNLHG 325 (361)
Q Consensus 252 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~-~~~~L~~l~l~~N~~~~~~~~-~~~~~~~~ 325 (361)
+|+.|++++|++++..+..|..+++|+.|++++|++++..+..+. .+++|+.+++++|++.|+++. .+|..|..
T Consensus 561 ~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~~~~~~~~~~ 636 (680)
T 1ziw_A 561 ELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWIN 636 (680)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCCCSSEECCSS
T ss_pred CcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCccHHHHHHHHH
Confidence 999999999999977777788899999999999999987776666 688999999999999999985 77777643
No 16
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.5e-36 Score=295.59 Aligned_cols=296 Identities=19% Similarity=0.300 Sum_probs=230.9
Q ss_pred CCCCeEeCCCcc-ccC-cCChhhhhcc------CCCCeEeCcCCcccccCCc-ccccCCCCCcEEEccCCCccccccccc
Q 042011 2 TSLRILDVSSNQ-LTG-SISSSPLVHL------TSIEELMLSNNHFQIPISL-EPLFNHSRLKIFYADNNELNAEITQSH 72 (361)
Q Consensus 2 ~~L~~L~L~~n~-i~~-~i~~~~~~~l------~~L~~L~Ls~n~l~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~ 72 (361)
++|++|++++|+ ++| .+|. .+..+ ++|++|++++|+++ .+|. ..+.++++|++|++++|.+++..+ .
T Consensus 273 ~~L~~L~Ls~n~~l~~~~lp~-~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~- 348 (636)
T 4eco_A 273 PEMQLINVACNRGISGEQLKD-DWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-A- 348 (636)
T ss_dssp SSCCEEECTTCTTSCHHHHHH-HHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-C-
T ss_pred CCCCEEECcCCCCCccccchH-HHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-h-
Confidence 455555555555 554 4554 44443 56666666666665 5552 156777777777777777765554 2
Q ss_pred ccccCcccccEEeccCCCCCCCCCchhhcCCCC-ccEEEecCCcccCCcChHHHhcCC--CCcEEEecCCcccCCCCCCc
Q 042011 73 SLIAPNFQLNSLSLSSDYGDGFIFPKFLYHQHD-LALVDLSHIKMNGEFPTWLLENNT--KLETLFLVNDSLTGPFRLPI 149 (361)
Q Consensus 73 ~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~-L~~L~l~~n~l~~~~~~~~~~~~~--~L~~L~l~~n~l~~~~~~~~ 149 (361)
+..+.+|++|++ ++|.+. .+|..+..+++ |++|++++|.++ .+|.. +...+ +|++|++++|.+.+..|..+
T Consensus 349 --~~~l~~L~~L~L-~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~l 422 (636)
T 4eco_A 349 --FGSEIKLASLNL-AYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNI-FDAKSVSVMSAIDFSYNEIGSVDGKNF 422 (636)
T ss_dssp --CEEEEEESEEEC-CSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSC-CCTTCSSCEEEEECCSSCTTTTTTCSS
T ss_pred --hCCCCCCCEEEC-CCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchh-hhhcccCccCEEECcCCcCCCcchhhh
Confidence 455567888888 777776 56667888888 888888888887 77765 44433 78889999998888778777
Q ss_pred C-------CCCCcCEEEccCCcCCccCChhhhccCCCccEEEecCCccccccCcc-ccCC-------CCCCEEeccCCcC
Q 042011 150 H-------SHRWLEFLDISNNNFRCHIPVEIGDILPSLKFFNISMNALDGSIPSS-FGNM-------NFLRVLDLSNNQL 214 (361)
Q Consensus 150 ~-------~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~~-------~~L~~L~l~~n~l 214 (361)
. .+++|++|++++|+++ .+|..++..+++|++|++++|.++ .+|.. +... ++|++|++++|.+
T Consensus 423 ~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l 500 (636)
T 4eco_A 423 DPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKL 500 (636)
T ss_dssp CTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCC
T ss_pred cccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcC
Confidence 7 7789999999999998 888888877899999999999998 55543 3333 2899999999999
Q ss_pred ccccchhhh-hCCCCCcEEEeecCCCCCcccccccCCCCCCEEec------cCCcCCccchhhhhcCCCCCEEECcCCcc
Q 042011 215 TGEIPEHLA-VGCVNLESLALSNNSLEGHMFSRNFNLTNLEWLQL------GGNRFVGEIPQSLSKCSSLEGLYLNNNSL 287 (361)
Q Consensus 215 ~~~~~~~~~-~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L------~~n~l~~~~~~~~~~l~~L~~L~l~~N~l 287 (361)
+ .+|..++ ..+++|++|++++|++++ .|..+..+++|+.|++ ++|++.+.+|..+..+++|++|++++|++
T Consensus 501 ~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 578 (636)
T 4eco_A 501 T-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI 578 (636)
T ss_dssp C-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred C-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC
Confidence 9 8998775 479999999999999998 7888889999999999 56778889999999999999999999999
Q ss_pred cccCCCCCCCcCcceeeccccccccCC
Q 042011 288 SGNVNVPSSPANTLFNLSQNSRRFTSS 314 (361)
Q Consensus 288 ~~~~~~~~~~~~~L~~l~l~~N~~~~~ 314 (361)
+ .+|..+. ++|+.|++++|++.+.
T Consensus 579 ~-~ip~~~~--~~L~~L~Ls~N~l~~~ 602 (636)
T 4eco_A 579 R-KVNEKIT--PNISVLDIKDNPNISI 602 (636)
T ss_dssp C-BCCSCCC--TTCCEEECCSCTTCEE
T ss_pred C-ccCHhHh--CcCCEEECcCCCCccc
Confidence 4 6777665 7999999999998863
No 17
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.8e-36 Score=292.10 Aligned_cols=168 Identities=23% Similarity=0.236 Sum_probs=104.0
Q ss_pred CCCCcCEEEccCCcCCccC--ChhhhccCCCccEEEecCCccc-----------------------cccC-ccccCCCCC
Q 042011 151 SHRWLEFLDISNNNFRCHI--PVEIGDILPSLKFFNISMNALD-----------------------GSIP-SSFGNMNFL 204 (361)
Q Consensus 151 ~l~~L~~L~l~~n~l~~~~--~~~~~~~l~~L~~L~L~~n~l~-----------------------~~~~-~~l~~~~~L 204 (361)
.+++|++|++++|++++.. +..+.. +++|++|++++|.+. +..+ ..+..+++|
T Consensus 345 ~~~~L~~L~l~~n~l~~~~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 423 (570)
T 2z63_A 345 DLPSLEFLDLSRNGLSFKGCCSQSDFG-TTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 423 (570)
T ss_dssp BCTTCCEEECCSSCCBEEEEEEHHHHT-CSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTC
T ss_pred cCCCCCEEeCcCCccCccccccccccc-cCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCC
Confidence 4456777777777765221 333332 455555555555544 3222 245555666
Q ss_pred CEEeccCCcCccccchhhhhCCCCCcEEEeecCCCC-CcccccccCCCCCCEEeccCCcCCccchhhhhcCCCCCEEECc
Q 042011 205 RVLDLSNNQLTGEIPEHLAVGCVNLESLALSNNSLE-GHMFSRNFNLTNLEWLQLGGNRFVGEIPQSLSKCSSLEGLYLN 283 (361)
Q Consensus 205 ~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 283 (361)
++|++++|.+.+..|..+ ..+++|++|++++|.+. +..|..+..+++|+.|++++|++++..|..+..+++|+.|+++
T Consensus 424 ~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 502 (570)
T 2z63_A 424 IYLDISHTHTRVAFNGIF-NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMA 502 (570)
T ss_dssp CEEECTTSCCEECCTTTT-TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEEeCcCCcccccchhhh-hcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCC
Confidence 666666666553333333 35666777777776665 3456666677777777777777776667777777777777777
Q ss_pred CCcccccCCCCCCCcCcceeeccccccccCCcccccc
Q 042011 284 NNSLSGNVNVPSSPANTLFNLSQNSRRFTSSISHSHL 320 (361)
Q Consensus 284 ~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~~~~~~ 320 (361)
+|++++..+..+..+++|++|++++|+++|.+|..++
T Consensus 503 ~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~ 539 (570)
T 2z63_A 503 SNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDY 539 (570)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHH
T ss_pred CCcCCCCCHHHhhcccCCcEEEecCCcccCCCcchHH
Confidence 7777776666677777777777777777777765444
No 18
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1e-36 Score=302.62 Aligned_cols=319 Identities=18% Similarity=0.199 Sum_probs=233.4
Q ss_pred CCCCCeEeCCCccccC-----------------cCChhhhh--ccCCCCeEeCcCCcccccCCcccccCCCCCcEEEccC
Q 042011 1 MTSLRILDVSSNQLTG-----------------SISSSPLV--HLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFYADN 61 (361)
Q Consensus 1 l~~L~~L~L~~n~i~~-----------------~i~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~ 61 (361)
|++|+.|+|++|++++ .+|. .+. ++++|++|+|++|++.+.+| ..+.++++|++|++++
T Consensus 447 L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~-~l~f~~L~~L~~L~Ls~N~l~~~iP-~~l~~L~~L~~L~Ls~ 524 (876)
T 4ecn_A 447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENE-ELSWSNLKDLTDVELYNCPNMTQLP-DFLYDLPELQSLNIAC 524 (876)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS-CCCGGGCTTCCEEEEESCTTCCSCC-GGGGGCSSCCEEECTT
T ss_pred CCCCCEEECcCCcCCCCcccccccccccccccccCCh-hhhhccCCCCCEEECcCCCCCccCh-HHHhCCCCCCEEECcC
Confidence 5789999999999986 2887 555 99999999999999888888 6889999999999999
Q ss_pred CC-ccc-cccccccc----ccCcccccEEeccCCCCCCCCCch--hhcCCCCccEEEecCCcccCCcChHHHhcCCCCcE
Q 042011 62 NE-LNA-EITQSHSL----IAPNFQLNSLSLSSDYGDGFIFPK--FLYHQHDLALVDLSHIKMNGEFPTWLLENNTKLET 133 (361)
Q Consensus 62 n~-~~~-~~~~~~~~----~~~~~~L~~L~l~~~~~~~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~ 133 (361)
|. +++ ..|..+.. +..+.+|++|++ ++|.+. .+|. .+..+++|+.|++++|.++ .+| . +..+++|++
T Consensus 525 N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~L-s~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~-~~~L~~L~~ 599 (876)
T 4ecn_A 525 NRGISAAQLKADWTRLADDEDTGPKIQIFYM-GYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-A-FGTNVKLTD 599 (876)
T ss_dssp CTTSCHHHHHHHHHHHHHCTTTTTTCCEEEC-CSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-C-CCTTSEESE
T ss_pred CCCcccccchHHHHhhhhcccccCCccEEEe-eCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-h-hcCCCcceE
Confidence 98 776 55543221 234448888888 888888 6666 7888888888888888887 777 3 778888888
Q ss_pred EEecCCcccCCCCCCcCCCCC-cCEEEccCCcCCccCChhhhccC--CCccEEEecCCccccc-----------------
Q 042011 134 LFLVNDSLTGPFRLPIHSHRW-LEFLDISNNNFRCHIPVEIGDIL--PSLKFFNISMNALDGS----------------- 193 (361)
Q Consensus 134 L~l~~n~l~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~~l--~~L~~L~L~~n~l~~~----------------- 193 (361)
|++++|.+. .+|..+..+++ |+.|++++|+++ .+|..+.. . ++|+.|++++|.+.+.
T Consensus 600 L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~-~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~ 676 (876)
T 4ecn_A 600 LKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNA-KSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINAS 676 (876)
T ss_dssp EECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCT-TCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEE
T ss_pred EECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhc-cccCCCCEEECcCCcCCCccccchhhhccccCCCcC
Confidence 888888887 67777777777 888888888877 66654432 2 2255555555555433
Q ss_pred -----------cCcc-ccCCCCCCEEeccCCcCccccchhhhhCC-------CCCcEEEeecCCCCCccccccc--CCCC
Q 042011 194 -----------IPSS-FGNMNFLRVLDLSNNQLTGEIPEHLAVGC-------VNLESLALSNNSLEGHMFSRNF--NLTN 252 (361)
Q Consensus 194 -----------~~~~-l~~~~~L~~L~l~~n~l~~~~~~~~~~~~-------~~L~~L~L~~n~l~~~~~~~~~--~~~~ 252 (361)
+|.. +..+++|+.|++++|.+. .+|...+... ++|+.|++++|+++. +|..+. .+++
T Consensus 677 ~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~-lp~~l~~~~l~~ 754 (876)
T 4ecn_A 677 TVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS-LSDDFRATTLPY 754 (876)
T ss_dssp EEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCCC-CCGGGSTTTCTT
T ss_pred EEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCcc-chHHhhhccCCC
Confidence 2222 235566667777777666 6666554322 267777777777774 555555 7788
Q ss_pred CCEEeccCCcCCccchhhhhcCCCCCEEECcC------CcccccCCCCCCCcCcceeeccccccccCCcccccccccccc
Q 042011 253 LEWLQLGGNRFVGEIPQSLSKCSSLEGLYLNN------NSLSGNVNVPSSPANTLFNLSQNSRRFTSSISHSHLLNLHGI 326 (361)
Q Consensus 253 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~------N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~~~~~~~~~~~~ 326 (361)
|+.|++++|++++ +|..+..+++|+.|++++ |++.+.+|..+..+++|+.|++++|++ +.+|...+..+..+
T Consensus 755 L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~~~L~~L 832 (876)
T 4ecn_A 755 LSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLTPQLYIL 832 (876)
T ss_dssp CCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCCSSSCEE
T ss_pred cCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhcCCCCEE
Confidence 8888888888885 677777888888888865 777778888888888888888888888 66776666666666
Q ss_pred hhhhHHH
Q 042011 327 CKEYAKE 333 (361)
Q Consensus 327 ~~~~~~~ 333 (361)
....++.
T Consensus 833 dLs~N~l 839 (876)
T 4ecn_A 833 DIADNPN 839 (876)
T ss_dssp ECCSCTT
T ss_pred ECCCCCC
Confidence 6655543
No 19
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=4.7e-36 Score=295.10 Aligned_cols=312 Identities=21% Similarity=0.175 Sum_probs=214.9
Q ss_pred CCCCeEeCCCccccCcCChhhhhccCC--CCeEeCcCCcccccCCcccccCCCCCcEEEccCCCcccccccccc------
Q 042011 2 TSLRILDVSSNQLTGSISSSPLVHLTS--IEELMLSNNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHS------ 73 (361)
Q Consensus 2 ~~L~~L~L~~n~i~~~i~~~~~~~l~~--L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~------ 73 (361)
++|+.|++++|.+++..|. .|.+++. |++|++++|++++..+ ..|..+++|++|++++|.+.+..+..+.
T Consensus 222 ~~L~~L~L~~n~l~~~~~~-~~~~l~~~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 299 (680)
T 1ziw_A 222 TSIRNLSLSNSQLSTTSNT-TFLGLKWTNLTMLDLSYNNLNVVGN-DSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVR 299 (680)
T ss_dssp SCCCEEECTTSCCCEECTT-TTGGGGGSCCCEEECTTSCCCEECT-TTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCC
T ss_pred ccccEEEccCCcccccChh-HhhccCcCCCCEEECCCCCcCccCc-ccccCcccccEeeCCCCccCccChhhhcCCCCcc
Confidence 6899999999999866666 7888865 9999999999985444 6899999999999999999876554321
Q ss_pred ------------------------cccCcccccEEeccCCCCCCCCCchhhcCCCCccEEEecCCcccC-CcChHHHhc-
Q 042011 74 ------------------------LIAPNFQLNSLSLSSDYGDGFIFPKFLYHQHDLALVDLSHIKMNG-EFPTWLLEN- 127 (361)
Q Consensus 74 ------------------------~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~~- 127 (361)
.+..+.+|++|++ ++|.+.+..+..|..+++|++|++++|.+.. .++...+..
T Consensus 300 ~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l-~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~ 378 (680)
T 1ziw_A 300 YLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNM-EDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSL 378 (680)
T ss_dssp EEECTTCBCCC------CCEECTTTTTTCTTCCEEEC-CSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGG
T ss_pred EEeccchhhhcccccccccccChhhcccCCCCCEEEC-CCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhccc
Confidence 1233456666676 6666666666666666666666666654321 111111111
Q ss_pred -CCCCcEEEecCCcccCCCCCCcCCCCCcCEEEccCCcCCccCChhhhccCCCccEEEecCCccc---------------
Q 042011 128 -NTKLETLFLVNDSLTGPFRLPIHSHRWLEFLDISNNNFRCHIPVEIGDILPSLKFFNISMNALD--------------- 191 (361)
Q Consensus 128 -~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~--------------- 191 (361)
.++|+.|++++|++.+..+..+..+++|+.|++++|.+.+.++...+..+++|++|++++|.+.
T Consensus 379 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~ 458 (680)
T 1ziw_A 379 AHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQR 458 (680)
T ss_dssp TTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCE
T ss_pred ccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCccccc
Confidence 1345555555555555555666666666666666666654455444444556666666555543
Q ss_pred -----------cccCccccCCCCCCEEeccCCcCccccchhhhhCCCCCcEEEeecCCCCCccc--------ccccCCCC
Q 042011 192 -----------GSIPSSFGNMNFLRVLDLSNNQLTGEIPEHLAVGCVNLESLALSNNSLEGHMF--------SRNFNLTN 252 (361)
Q Consensus 192 -----------~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~--------~~~~~~~~ 252 (361)
+..|..+..+++|++|++++|.++ .++...+..+++|++|++++|++++..+ ..+..+++
T Consensus 459 L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~ 537 (680)
T 1ziw_A 459 LMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIA-NINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSH 537 (680)
T ss_dssp EECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTT
T ss_pred chhccccccccccCCcccccCCCCCEEECCCCCCC-cCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCC
Confidence 245566777777888888888877 5655555577888888888888775422 23667788
Q ss_pred CCEEeccCCcCCccchhhhhcCCCCCEEECcCCcccccCCCCCCCcCcceeeccccccccCCccc
Q 042011 253 LEWLQLGGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGNVNVPSSPANTLFNLSQNSRRFTSSISH 317 (361)
Q Consensus 253 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~~~ 317 (361)
|+.|++++|+++...+..|.++++|+.|++++|++++..+..|..+++|+.|++++|++++..+.
T Consensus 538 L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~ 602 (680)
T 1ziw_A 538 LHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKK 602 (680)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHH
T ss_pred CCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChh
Confidence 88888888888855555688888888888888888877777778888888888888888875553
No 20
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=6.2e-36 Score=280.62 Aligned_cols=286 Identities=20% Similarity=0.221 Sum_probs=236.6
Q ss_pred CCCCCeEeCCCccccCcCChhhhhccCCCCeEeCcCCcccccCCcccccCCCCCcEEEccCCCcccccccccccccCccc
Q 042011 1 MTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLIAPNFQ 80 (361)
Q Consensus 1 l~~L~~L~L~~n~i~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~ 80 (361)
+++|++|++++|.+.+.++...|.++++|++|+|++|++++..+ ..|.++++|++|++++|.+++..+.. ..+..+.+
T Consensus 53 l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~~~l~~ 130 (455)
T 3v47_A 53 LQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLET-GAFNGLANLEVLTLTQCNLDGAVLSG-NFFKPLTS 130 (455)
T ss_dssp CTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECT-TTTTTCTTCCEEECTTSCCBTHHHHS-STTTTCTT
T ss_pred CccccEEECcCCcccceECcccccccccCCEEeCCCCccCccCh-hhccCcccCCEEeCCCCCCCccccCc-ccccCccc
Confidence 57899999999999777876689999999999999999985445 68999999999999999997633222 12456779
Q ss_pred ccEEeccCCCCCCCCCchh-hcCCCCccEEEecCCcccCCcChHHHhc--------------------------------
Q 042011 81 LNSLSLSSDYGDGFIFPKF-LYHQHDLALVDLSHIKMNGEFPTWLLEN-------------------------------- 127 (361)
Q Consensus 81 L~~L~l~~~~~~~~~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~~~~~-------------------------------- 127 (361)
|++|++ ++|.+.+..|.. +..+++|++|++++|.+++..+.. +..
T Consensus 131 L~~L~L-~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~ 208 (455)
T 3v47_A 131 LEMLVL-RDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEED-LLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNP 208 (455)
T ss_dssp CCEEEC-CSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTT-SGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCT
T ss_pred CCEEEC-CCCccCccCcccccCCCCcccEEeCCCCcccccChhh-hhccccccccccccccCcccccchhhccccccccc
Confidence 999999 889998877765 889999999999999988655543 222
Q ss_pred --CCCCcEEEecCCcccCCCCCCc-------------------------------------C--CCCCcCEEEccCCcCC
Q 042011 128 --NTKLETLFLVNDSLTGPFRLPI-------------------------------------H--SHRWLEFLDISNNNFR 166 (361)
Q Consensus 128 --~~~L~~L~l~~n~l~~~~~~~~-------------------------------------~--~l~~L~~L~l~~n~l~ 166 (361)
+++|++|++++|++.+..+..+ . ..++|++|++++|.++
T Consensus 209 ~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 288 (455)
T 3v47_A 209 FKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIF 288 (455)
T ss_dssp TTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCC
T ss_pred cccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCcccc
Confidence 3678888888887754222111 1 1257999999999998
Q ss_pred ccCChhhhccCCCccEEEecCCccccccCccccCCCCCCEEeccCCcCccccchhhhhCCCCCcEEEeecCCCCCccccc
Q 042011 167 CHIPVEIGDILPSLKFFNISMNALDGSIPSSFGNMNFLRVLDLSNNQLTGEIPEHLAVGCVNLESLALSNNSLEGHMFSR 246 (361)
Q Consensus 167 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 246 (361)
+..|..+. .+++|++|++++|.+++..+..|..+++|++|++++|.++ .++...+..+++|++|++++|++++..+..
T Consensus 289 ~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 366 (455)
T 3v47_A 289 ALLKSVFS-HFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLG-SIDSRMFENLDKLEVLDLSYNHIRALGDQS 366 (455)
T ss_dssp EECTTTTT-TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-EECGGGGTTCTTCCEEECCSSCCCEECTTT
T ss_pred ccchhhcc-cCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccC-CcChhHhcCcccCCEEECCCCcccccChhh
Confidence 55555554 4899999999999999888889999999999999999998 565555558999999999999999988999
Q ss_pred ccCCCCCCEEeccCCcCCccchhhhhcCCCCCEEECcCCcccccCC
Q 042011 247 NFNLTNLEWLQLGGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGNVN 292 (361)
Q Consensus 247 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 292 (361)
+..+++|++|++++|++++..+..+..+++|+.|++++|++++..|
T Consensus 367 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 367 FLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred ccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 9999999999999999998777788999999999999999998665
No 21
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.3e-35 Score=283.10 Aligned_cols=293 Identities=21% Similarity=0.185 Sum_probs=241.4
Q ss_pred CeEeCCCccccCcCChhhhhccCCCCeEeCcCCcccccCCcccccCCCCCcEEEccCCCcccccccccccccCcccccEE
Q 042011 5 RILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLIAPNFQLNSL 84 (361)
Q Consensus 5 ~~L~L~~n~i~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L 84 (361)
++||+++|+++ .+|. .+. ++|++|++++|+++ .++...|.++++|++|++++|.+++..+.. +..+.+|++|
T Consensus 3 ~~l~ls~n~l~-~ip~-~~~--~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~---~~~l~~L~~L 74 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPK-DLS--QKTTILNISQNYIS-ELWTSDILSLSKLRILIISHNRIQYLDISV---FKFNQELEYL 74 (520)
T ss_dssp CEEECTTSCCS-SCCC-SCC--TTCSEEECCSSCCC-CCCHHHHTTCTTCCEEECCSSCCCEEEGGG---GTTCTTCCEE
T ss_pred ceEecCCCCcc-cccc-ccc--ccccEEECCCCccc-ccChhhccccccccEEecCCCccCCcChHH---hhcccCCCEE
Confidence 58999999998 8997 343 89999999999998 455468999999999999999999876655 5677899999
Q ss_pred eccCCCCCCCCCchhhcCCCCccEEEecCCcccC-CcChHHHhcCCCCcEEEecCCcccCCCCCCcCCCCCc--CEEEcc
Q 042011 85 SLSSDYGDGFIFPKFLYHQHDLALVDLSHIKMNG-EFPTWLLENNTKLETLFLVNDSLTGPFRLPIHSHRWL--EFLDIS 161 (361)
Q Consensus 85 ~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L--~~L~l~ 161 (361)
++ ++|.++. +|.. .+++|++|++++|.+++ .+|.. ++++++|++|++++|.+.+ ..+..+++| ++|+++
T Consensus 75 ~L-s~N~l~~-lp~~--~l~~L~~L~L~~N~l~~~~~p~~-~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~ 146 (520)
T 2z7x_B 75 DL-SHNKLVK-ISCH--PTVNLKHLDLSFNAFDALPICKE-FGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLV 146 (520)
T ss_dssp EC-CSSCCCE-EECC--CCCCCSEEECCSSCCSSCCCCGG-GGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEE
T ss_pred ec-CCCceee-cCcc--ccCCccEEeccCCccccccchhh-hccCCcceEEEecCcccch---hhccccccceeeEEEee
Confidence 99 9999984 4544 89999999999999985 35666 8999999999999999875 456677777 999999
Q ss_pred CCcC--CccCChhhhc----------------------------------------------------------------
Q 042011 162 NNNF--RCHIPVEIGD---------------------------------------------------------------- 175 (361)
Q Consensus 162 ~n~l--~~~~~~~~~~---------------------------------------------------------------- 175 (361)
+|.+ .+..|..+..
T Consensus 147 ~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~ 226 (520)
T 2z7x_B 147 LGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLT 226 (520)
T ss_dssp ECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEE
T ss_pred cccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhcc
Confidence 9988 4344433322
Q ss_pred ------------------cCCCccEEEecCCccccccCccc---------------------------------------
Q 042011 176 ------------------ILPSLKFFNISMNALDGSIPSSF--------------------------------------- 198 (361)
Q Consensus 176 ------------------~l~~L~~L~L~~n~l~~~~~~~l--------------------------------------- 198 (361)
..++|++|++++|.+++.+|..+
T Consensus 227 l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~ 306 (520)
T 2z7x_B 227 LNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKN 306 (520)
T ss_dssp EEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSE
T ss_pred ccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeE
Confidence 01267788888887776555544
Q ss_pred --------------cCCCCCCEEeccCCcCccccchhhhhCCCCCcEEEeecCCCCC--cccccccCCCCCCEEeccCCc
Q 042011 199 --------------GNMNFLRVLDLSNNQLTGEIPEHLAVGCVNLESLALSNNSLEG--HMFSRNFNLTNLEWLQLGGNR 262 (361)
Q Consensus 199 --------------~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~--~~~~~~~~~~~L~~L~L~~n~ 262 (361)
..+++|++|++++|.+++.+|..+. .+++|++|++++|++++ ..+..+..+++|+.|++++|+
T Consensus 307 L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~ 385 (520)
T 2z7x_B 307 FTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCG-HLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNS 385 (520)
T ss_dssp EEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCC-CCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSC
T ss_pred EEcCCCccccccchhhCCcccEEEeECCccChhhhhhhc-cCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCc
Confidence 5778999999999999966777665 89999999999999997 455778999999999999999
Q ss_pred CCccchh-hhhcCCCCCEEECcCCcccccCCCCCCCcCcceeeccccccccCCccc
Q 042011 263 FVGEIPQ-SLSKCSSLEGLYLNNNSLSGNVNVPSSPANTLFNLSQNSRRFTSSISH 317 (361)
Q Consensus 263 l~~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~~~ 317 (361)
+++.+|. .+..+++|++|++++|++++..|..+. ++|++|++++|+++. +|.
T Consensus 386 l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~-ip~ 438 (520)
T 2z7x_B 386 VSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKS-IPK 438 (520)
T ss_dssp CBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCC-CCG
T ss_pred CCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCcccc-cch
Confidence 9974665 488899999999999999988776664 799999999999994 553
No 22
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=7.1e-35 Score=263.84 Aligned_cols=298 Identities=24% Similarity=0.291 Sum_probs=241.2
Q ss_pred CCCCCeEeCCCccccCcCChhhhhccCCCCeEeCcCCcccccCCcccccCCCCCcEEEccCCCcccccccccccccCccc
Q 042011 1 MTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLIAPNFQ 80 (361)
Q Consensus 1 l~~L~~L~L~~n~i~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~ 80 (361)
+++|++|+++++.++ .++. +..+++|++|++++|+++ .++ .+..+++|++|++++|.+++. ..+..+.+
T Consensus 43 l~~L~~L~l~~~~i~-~~~~--~~~~~~L~~L~l~~n~i~-~~~--~~~~l~~L~~L~L~~n~i~~~-----~~~~~l~~ 111 (347)
T 4fmz_A 43 LESITKLVVAGEKVA-SIQG--IEYLTNLEYLNLNGNQIT-DIS--PLSNLVKLTNLYIGTNKITDI-----SALQNLTN 111 (347)
T ss_dssp HTTCSEEECCSSCCC-CCTT--GGGCTTCCEEECCSSCCC-CCG--GGTTCTTCCEEECCSSCCCCC-----GGGTTCTT
T ss_pred cccccEEEEeCCccc-cchh--hhhcCCccEEEccCCccc-cch--hhhcCCcCCEEEccCCcccCc-----hHHcCCCc
Confidence 367899999999997 7775 888999999999999998 555 288999999999999988763 23667789
Q ss_pred ccEEeccCCCCCCCCCchhhcCCCCccEEEecCCcccCCcChHHHhcCCCCcEEEecCCcccCCCCCCcCCCCCcCEEEc
Q 042011 81 LNSLSLSSDYGDGFIFPKFLYHQHDLALVDLSHIKMNGEFPTWLLENNTKLETLFLVNDSLTGPFRLPIHSHRWLEFLDI 160 (361)
Q Consensus 81 L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 160 (361)
|++|++ ++|.+....+ +..+++|++|++++|.....++. +..+++|++|++++|.+.+..+ +..+++|++|++
T Consensus 112 L~~L~l-~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l 184 (347)
T 4fmz_A 112 LRELYL-NEDNISDISP--LANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSL 184 (347)
T ss_dssp CSEEEC-TTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEEC
T ss_pred CCEEEC-cCCcccCchh--hccCCceeEEECCCCCCcccccc--hhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEc
Confidence 999999 8888876533 88899999999999965545544 7889999999999998876433 778889999999
Q ss_pred cCCcCCccCChhhhccCCCccEEEecCCccccccCccccCCCCCCEEeccCCcCccccchhhhhCCCCCcEEEeecCCCC
Q 042011 161 SNNNFRCHIPVEIGDILPSLKFFNISMNALDGSIPSSFGNMNFLRVLDLSNNQLTGEIPEHLAVGCVNLESLALSNNSLE 240 (361)
Q Consensus 161 ~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~ 240 (361)
++|.+. .++. + ..+++|+.+++++|.+++..+ +..+++|++|++++|.++ .++. +..+++|++|++++|.++
T Consensus 185 ~~n~l~-~~~~-~-~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~l~~n~l~ 256 (347)
T 4fmz_A 185 NYNQIE-DISP-L-ASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKIT-DLSP--LANLSQLTWLEIGTNQIS 256 (347)
T ss_dssp TTSCCC-CCGG-G-GGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCC
T ss_pred cCCccc-cccc-c-cCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccC-CCcc--hhcCCCCCEEECCCCccC
Confidence 999987 5554 3 348899999999998884433 778889999999999988 5555 347889999999999888
Q ss_pred CcccccccCCCCCCEEeccCCcCCccchhhhhcCCCCCEEECcCCcccccCCCCCCCcCcceeeccccccccCCcccccc
Q 042011 241 GHMFSRNFNLTNLEWLQLGGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGNVNVPSSPANTLFNLSQNSRRFTSSISHSHL 320 (361)
Q Consensus 241 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~~~~~~ 320 (361)
+. ..+..+++|+.|++++|++++. ..+..+++|+.|++++|++++..+..+..+++|++|++++|++++..|...+
T Consensus 257 ~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l 332 (347)
T 4fmz_A 257 DI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLASL 332 (347)
T ss_dssp CC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGGGGGC
T ss_pred CC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccChhhh
Confidence 74 4677889999999999988854 4578889999999999999887777788889999999999999887775556
Q ss_pred cccccchh
Q 042011 321 LNLHGICK 328 (361)
Q Consensus 321 ~~~~~~~~ 328 (361)
..+..+..
T Consensus 333 ~~L~~L~l 340 (347)
T 4fmz_A 333 SKMDSADF 340 (347)
T ss_dssp TTCSEESS
T ss_pred hccceeeh
Confidence 66555443
No 23
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.3e-35 Score=298.04 Aligned_cols=305 Identities=17% Similarity=0.165 Sum_probs=213.8
Q ss_pred CCCCeEeCCCccccCcCChhhhhccCCCCeEeCcCCcccccCCcccccCCCCCcEEEccCCCcccccccccccccCcccc
Q 042011 2 TSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLIAPNFQL 81 (361)
Q Consensus 2 ~~L~~L~L~~n~i~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L 81 (361)
+++++|||++|.|++..|. .|.++++|++|+|++|...+.++..+|.++++|++|++++|.+.+..+.. +..+.+|
T Consensus 24 ~~l~~LdLs~N~i~~i~~~-~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~---~~~l~~L 99 (844)
T 3j0a_A 24 NTTERLLLSFNYIRTVTAS-SFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDA---FQGLFHL 99 (844)
T ss_dssp TTCCEEEEESCCCCEECSS-SCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTS---SCSCSSC
T ss_pred CCcCEEECCCCcCCccChh-HCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhH---ccCCccc
Confidence 5789999999999844455 89999999999999997666775578899999999999999998776665 5677799
Q ss_pred cEEeccCCCCCCCCCchh--hcCCCCccEEEecCCcccCCcChHHHhcCCCCcEEEecCCcccCCCCCCcCCC--CCcCE
Q 042011 82 NSLSLSSDYGDGFIFPKF--LYHQHDLALVDLSHIKMNGEFPTWLLENNTKLETLFLVNDSLTGPFRLPIHSH--RWLEF 157 (361)
Q Consensus 82 ~~L~l~~~~~~~~~~~~~--l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l--~~L~~ 157 (361)
++|++ ++|.+.+..+.. +..+++|++|++++|.+++..+...++++++|++|++++|.+.+..+..+..+ ++|+.
T Consensus 100 ~~L~L-s~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~ 178 (844)
T 3j0a_A 100 FELRL-YFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSF 178 (844)
T ss_dssp CCEEC-TTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCC
T ss_pred CEeeC-cCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccce
Confidence 99999 888888755544 88899999999999998865554447889999999999998887666666655 66777
Q ss_pred EEccCCcCCccCChhhhccCC------CccEEEecCCccccccCcccc--------------------------------
Q 042011 158 LDISNNNFRCHIPVEIGDILP------SLKFFNISMNALDGSIPSSFG-------------------------------- 199 (361)
Q Consensus 158 L~l~~n~l~~~~~~~~~~~l~------~L~~L~L~~n~l~~~~~~~l~-------------------------------- 199 (361)
|++++|.+.+..+..+.. ++ .|+.|++++|.+++..+..+.
T Consensus 179 L~L~~n~l~~~~~~~~~~-~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~ 257 (844)
T 3j0a_A 179 FSLAANSLYSRVSVDWGK-CMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQ 257 (844)
T ss_dssp CEECCSBSCCCCCCCCCS-SSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGG
T ss_pred EECCCCccccccccchhh-cCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCCh
Confidence 777777666544443322 22 266666666654433222111
Q ss_pred ----C--CCCCCEEeccCCcCccccchhhhhCCCCCcEEEeecCCCCCcccccccCCCCCCEEeccCCcCCccchhhhhc
Q 042011 200 ----N--MNFLRVLDLSNNQLTGEIPEHLAVGCVNLESLALSNNSLEGHMFSRNFNLTNLEWLQLGGNRFVGEIPQSLSK 273 (361)
Q Consensus 200 ----~--~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~ 273 (361)
+ .++|++|++++|.+. .++...+..+++|+.|++++|++++..+..+..+++|+.|++++|++++..+..|..
T Consensus 258 ~~f~~l~~~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 336 (844)
T 3j0a_A 258 NTFAGLARSSVRHLDLSHGFVF-SLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYG 336 (844)
T ss_dssp TTTTTTTTSCCCEEECTTCCCC-EECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSS
T ss_pred hhhhccccCCccEEECCCCccc-ccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcC
Confidence 1 145666666666666 333333346666777777777666666666666666777777777666555666666
Q ss_pred CCCCCEEECcCCcccccCCCCCCCcCcceeeccccccccC
Q 042011 274 CSSLEGLYLNNNSLSGNVNVPSSPANTLFNLSQNSRRFTS 313 (361)
Q Consensus 274 l~~L~~L~l~~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~ 313 (361)
+++|+.|++++|.+++..+..|..+++|+.|++++|.+++
T Consensus 337 l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~ 376 (844)
T 3j0a_A 337 LPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT 376 (844)
T ss_dssp CTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC
T ss_pred CCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCc
Confidence 6677777777776666555666666666666666666654
No 24
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=2.2e-35 Score=285.71 Aligned_cols=300 Identities=19% Similarity=0.195 Sum_probs=230.3
Q ss_pred CCCCeEeCCCccccCcCChhhhhccCCCCeEeCcCCcccccCCcccccCCCCCcEEEccCCCcccccccccccccCcccc
Q 042011 2 TSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLIAPNFQL 81 (361)
Q Consensus 2 ~~L~~L~L~~n~i~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L 81 (361)
++++.+++++|.+. .+|...|.++++|++|+|++|.+++ ++...|..+++|++|++++|.+++..+.. +..+.+|
T Consensus 51 ~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~---~~~l~~L 125 (597)
T 3oja_B 51 NNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEE-IDTYAFAYAHTIQKLYMGFNAIRYLPPHV---FQNVPLL 125 (597)
T ss_dssp CCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSCCCCCCTTT---TTTCTTC
T ss_pred CCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCC-CChHHhcCCCCCCEEECCCCcCCCCCHHH---HcCCCCC
Confidence 56788888888886 7777678888888888888888874 44357888888888888888887765554 4566688
Q ss_pred cEEeccCCCCCCCCCchhhcCCCCccEEEecCCcccCCcChHHHhcCCCCcEEEecCCcccCCCCCCcCCCCC-------
Q 042011 82 NSLSLSSDYGDGFIFPKFLYHQHDLALVDLSHIKMNGEFPTWLLENNTKLETLFLVNDSLTGPFRLPIHSHRW------- 154 (361)
Q Consensus 82 ~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~------- 154 (361)
++|++ ++|.++...+..|..+++|++|++++|.+++..|.. +.++++|++|++++|.+.+.. +..+++
T Consensus 126 ~~L~L-~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~ 200 (597)
T 3oja_B 126 TVLVL-ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDT-FQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVS 200 (597)
T ss_dssp CEEEC-CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTT-TTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECC
T ss_pred CEEEe-eCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhh-hhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcc
Confidence 88888 888888766666788888888888888887544444 778888888888888887542 233344
Q ss_pred ------------cCEEEccCCcCCccCChhhhccCCCccEEEecCCccccccCccccCCCCCCEEeccCCcCccccchhh
Q 042011 155 ------------LEFLDISNNNFRCHIPVEIGDILPSLKFFNISMNALDGSIPSSFGNMNFLRVLDLSNNQLTGEIPEHL 222 (361)
Q Consensus 155 ------------L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~ 222 (361)
|+.|++++|.+. .++... .++|+.|++++|.+++ +..+..+++|++|++++|.+.+..|..+
T Consensus 201 ~n~l~~l~~~~~L~~L~ls~n~l~-~~~~~~---~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~ 274 (597)
T 3oja_B 201 YNLLSTLAIPIAVEELDASHNSIN-VVRGPV---NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPF 274 (597)
T ss_dssp SSCCSEEECCTTCSEEECCSSCCC-EEECSC---CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGG
T ss_pred cCccccccCCchhheeeccCCccc-cccccc---CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHh
Confidence 555555555554 333332 3578888888888874 3568889999999999999985556555
Q ss_pred hhCCCCCcEEEeecCCCCCcccccccCCCCCCEEeccCCcCCccchhhhhcCCCCCEEECcCCcccccCCCCCCCcCcce
Q 042011 223 AVGCVNLESLALSNNSLEGHMFSRNFNLTNLEWLQLGGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGNVNVPSSPANTLF 302 (361)
Q Consensus 223 ~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~L~ 302 (361)
. .+++|+.|++++|.+++ .+..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|.+++.. +..+++|+
T Consensus 275 ~-~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~ 348 (597)
T 3oja_B 275 V-KMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLK 348 (597)
T ss_dssp T-TCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCS
T ss_pred c-CccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCC
Confidence 4 78999999999999987 4666677899999999999998 57777888999999999999998642 66778999
Q ss_pred eeccccccccCCccccccccc
Q 042011 303 NLSQNSRRFTSSISHSHLLNL 323 (361)
Q Consensus 303 ~l~l~~N~~~~~~~~~~~~~~ 323 (361)
.|++++|+|.|.+...++..+
T Consensus 349 ~L~l~~N~~~~~~~~~~~~~~ 369 (597)
T 3oja_B 349 NLTLSHNDWDCNSLRALFRNV 369 (597)
T ss_dssp EEECCSSCEEHHHHHHHTTTC
T ss_pred EEEeeCCCCCChhHHHHHHHH
Confidence 999999999887655554443
No 25
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=2.5e-34 Score=260.23 Aligned_cols=282 Identities=21% Similarity=0.275 Sum_probs=241.2
Q ss_pred CCCCCeEeCCCccccCcCChhhhhccCCCCeEeCcCCcccccCCcccccCCCCCcEEEccCCCcccccccccccccCccc
Q 042011 1 MTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLIAPNFQ 80 (361)
Q Consensus 1 l~~L~~L~L~~n~i~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~ 80 (361)
+++|++|++++|+++ .++. +..+++|++|++++|.++ .++ .+..+++|++|++++|.+.+..+ +..+.+
T Consensus 65 ~~~L~~L~l~~n~i~-~~~~--~~~l~~L~~L~L~~n~i~-~~~--~~~~l~~L~~L~l~~n~i~~~~~-----~~~l~~ 133 (347)
T 4fmz_A 65 LTNLEYLNLNGNQIT-DISP--LSNLVKLTNLYIGTNKIT-DIS--ALQNLTNLRELYLNEDNISDISP-----LANLTK 133 (347)
T ss_dssp CTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCC-CCG--GGTTCTTCSEEECTTSCCCCCGG-----GTTCTT
T ss_pred cCCccEEEccCCccc-cchh--hhcCCcCCEEEccCCccc-Cch--HHcCCCcCCEEECcCCcccCchh-----hccCCc
Confidence 578999999999998 7776 999999999999999998 454 69999999999999999986433 567779
Q ss_pred ccEEeccCCCCCCCCCchhhcCCCCccEEEecCCcccCCcChHHHhcCCCCcEEEecCCcccCCCCCCcCCCCCcCEEEc
Q 042011 81 LNSLSLSSDYGDGFIFPKFLYHQHDLALVDLSHIKMNGEFPTWLLENNTKLETLFLVNDSLTGPFRLPIHSHRWLEFLDI 160 (361)
Q Consensus 81 L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 160 (361)
|++|++ ++|...... ..+..+++|++|++++|.+. .++. +..+++|++|++++|.+.+..+ +..+++|+.+++
T Consensus 134 L~~L~l-~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~-~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l 206 (347)
T 4fmz_A 134 MYSLNL-GANHNLSDL-SPLSNMTGLNYLTVTESKVK-DVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTA 206 (347)
T ss_dssp CCEEEC-TTCTTCCCC-GGGTTCTTCCEEECCSSCCC-CCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEEC
T ss_pred eeEEEC-CCCCCcccc-cchhhCCCCcEEEecCCCcC-Cchh--hccCCCCCEEEccCCccccccc--ccCCCccceeec
Confidence 999999 777544333 34889999999999999998 4444 7899999999999999986433 888999999999
Q ss_pred cCCcCCccCChhhhccCCCccEEEecCCccccccCccccCCCCCCEEeccCCcCccccchhhhhCCCCCcEEEeecCCCC
Q 042011 161 SNNNFRCHIPVEIGDILPSLKFFNISMNALDGSIPSSFGNMNFLRVLDLSNNQLTGEIPEHLAVGCVNLESLALSNNSLE 240 (361)
Q Consensus 161 ~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~ 240 (361)
++|.++ .++. + ..+++|++|++++|.+++. +. +..+++|++|++++|.++ .++ .+ ..+++|++|++++|+++
T Consensus 207 ~~n~l~-~~~~-~-~~~~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~-~~~-~~-~~l~~L~~L~l~~n~l~ 278 (347)
T 4fmz_A 207 YVNQIT-DITP-V-ANMTRLNSLKIGNNKITDL-SP-LANLSQLTWLEIGTNQIS-DIN-AV-KDLTKLKMLNVGSNQIS 278 (347)
T ss_dssp CSSCCC-CCGG-G-GGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCC-CCG-GG-TTCTTCCEEECCSSCCC
T ss_pred ccCCCC-CCch-h-hcCCcCCEEEccCCccCCC-cc-hhcCCCCCEEECCCCccC-CCh-hH-hcCCCcCEEEccCCccC
Confidence 999998 5544 3 4489999999999999844 33 889999999999999998 554 33 47999999999999998
Q ss_pred CcccccccCCCCCCEEeccCCcCCccchhhhhcCCCCCEEECcCCcccccCCCCCCCcCcceeecccccccc
Q 042011 241 GHMFSRNFNLTNLEWLQLGGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGNVNVPSSPANTLFNLSQNSRRFT 312 (361)
Q Consensus 241 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~L~~l~l~~N~~~ 312 (361)
+. ..+..+++|+.|++++|++++..+..+..+++|+.|++++|++++..| +..+++|++|++++|+++
T Consensus 279 ~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 279 DI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp CC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred CC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 84 467889999999999999998899999999999999999999998766 888999999999999986
No 26
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=3.3e-35 Score=282.10 Aligned_cols=162 Identities=23% Similarity=0.254 Sum_probs=98.8
Q ss_pred CCCCCcCEEEccCCcCCccCCh--hhhccCCCccEEEecCCccccccCccccCCCCCCEEeccCCcCccccchhhhhCCC
Q 042011 150 HSHRWLEFLDISNNNFRCHIPV--EIGDILPSLKFFNISMNALDGSIPSSFGNMNFLRVLDLSNNQLTGEIPEHLAVGCV 227 (361)
Q Consensus 150 ~~l~~L~~L~l~~n~l~~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~ 227 (361)
..+++|++|++++|+++ .++. ..+..+++|++|++++|.++ .+|..+..+++|++|++++|.++ .+|..+ .+
T Consensus 358 ~~l~~L~~L~Ls~N~l~-~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~---~~ 431 (549)
T 2z81_A 358 GAWPSLQTLVLSQNHLR-SMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCI---PQ 431 (549)
T ss_dssp TSSTTCCEEECTTSCCC-CHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCS-CCCTTS---CT
T ss_pred hccccCcEEEccCCccc-ccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcc-cccchh---cC
Confidence 34444444444444444 2221 12222455555555555554 44444555555555555555554 444322 24
Q ss_pred CCcEEEeecCCCCCcccccccCCCCCCEEeccCCcCCccchhhhhcCCCCCEEECcCCcccccCCCCCCCcCcceeeccc
Q 042011 228 NLESLALSNNSLEGHMFSRNFNLTNLEWLQLGGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGNVNVPSSPANTLFNLSQN 307 (361)
Q Consensus 228 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~L~~l~l~ 307 (361)
+|++|++++|++++.. ..+++|++|++++|+++ .+|. ...+++|+.|++++|++++.+|..+..+++|+.|+++
T Consensus 432 ~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~ 505 (549)
T 2z81_A 432 TLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLH 505 (549)
T ss_dssp TCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECC
T ss_pred CceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEec
Confidence 5666666666655432 36778888888888887 4554 4567888888888888888777778888888888888
Q ss_pred cccccCCccc-cccccc
Q 042011 308 SRRFTSSISH-SHLLNL 323 (361)
Q Consensus 308 ~N~~~~~~~~-~~~~~~ 323 (361)
+|+++|.+|. .++..|
T Consensus 506 ~N~~~~~~~~~~~l~~~ 522 (549)
T 2z81_A 506 TNPWDCSCPRIDYLSRW 522 (549)
T ss_dssp SSCBCCCHHHHHHHHHH
T ss_pred CCCccCCCccHHHHHHH
Confidence 8888888773 334333
No 27
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=4.6e-35 Score=281.80 Aligned_cols=294 Identities=18% Similarity=0.148 Sum_probs=238.5
Q ss_pred CCCeEeCCCccccCcCChhhhhccCCCCeEeCcCCcccccCCcccccCCCCCcEEEccCCCcccccccccccccCccccc
Q 042011 3 SLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLIAPNFQLN 82 (361)
Q Consensus 3 ~L~~L~L~~n~i~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~ 82 (361)
..+++++++|+++ .+|. .+ .++|++|++++|.++ .++...|.++++|++|++++|.+++..+.. +..+.+|+
T Consensus 32 ~~~~l~ls~~~L~-~ip~-~~--~~~L~~L~Ls~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~---~~~l~~L~ 103 (562)
T 3a79_B 32 LESMVDYSNRNLT-HVPK-DL--PPRTKALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIRSLDFHV---FLFNQDLE 103 (562)
T ss_dssp -CCEEECTTSCCC-SCCT-TS--CTTCCEEECCSSCCC-CCCGGGTTTCTTCCEEECCSCCCCEECTTT---TTTCTTCC
T ss_pred CCcEEEcCCCCCc-cCCC-CC--CCCcCEEECCCCCcc-ccChhhhccCCCccEEECCCCCCCcCCHHH---hCCCCCCC
Confidence 3478999999998 7997 33 289999999999998 565578999999999999999999876655 56678999
Q ss_pred EEeccCCCCCCCCCchhhcCCCCccEEEecCCcccC-CcChHHHhcCCCCcEEEecCCcccCCCCCCcCCCCCc--CEEE
Q 042011 83 SLSLSSDYGDGFIFPKFLYHQHDLALVDLSHIKMNG-EFPTWLLENNTKLETLFLVNDSLTGPFRLPIHSHRWL--EFLD 159 (361)
Q Consensus 83 ~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L--~~L~ 159 (361)
+|++ ++|.++. +|.. .+++|++|++++|.+++ .+|.. ++++++|++|++++|++.+. .+..+++| ++|+
T Consensus 104 ~L~L-s~N~l~~-lp~~--~l~~L~~L~Ls~N~l~~l~~p~~-~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~ 175 (562)
T 3a79_B 104 YLDV-SHNRLQN-ISCC--PMASLRHLDLSFNDFDVLPVCKE-FGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCIL 175 (562)
T ss_dssp EEEC-TTSCCCE-ECSC--CCTTCSEEECCSSCCSBCCCCGG-GGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEE
T ss_pred EEEC-CCCcCCc-cCcc--ccccCCEEECCCCCccccCchHh-hcccCcccEEecCCCccccC---chhhhhhceeeEEE
Confidence 9999 9999984 4444 79999999999999984 23355 89999999999999999853 45555555 9999
Q ss_pred ccCCcC--CccCChhhhc--------------------------------------------------------------
Q 042011 160 ISNNNF--RCHIPVEIGD-------------------------------------------------------------- 175 (361)
Q Consensus 160 l~~n~l--~~~~~~~~~~-------------------------------------------------------------- 175 (361)
+++|.+ ++..|..+..
T Consensus 176 L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~ 255 (562)
T 3a79_B 176 LDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVT 255 (562)
T ss_dssp EEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEE
T ss_pred eecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEE
Confidence 999988 4333333222
Q ss_pred ------------------cCCCccEEEecCCccccccCccc---------------------------------------
Q 042011 176 ------------------ILPSLKFFNISMNALDGSIPSSF--------------------------------------- 198 (361)
Q Consensus 176 ------------------~l~~L~~L~L~~n~l~~~~~~~l--------------------------------------- 198 (361)
..++|++|++++|.+++.+|..+
T Consensus 256 L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~ 335 (562)
T 3a79_B 256 LQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKM 335 (562)
T ss_dssp EEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSE
T ss_pred ecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceE
Confidence 01267788888888776666544
Q ss_pred --------------cCCCCCCEEeccCCcCccccchhhhhCCCCCcEEEeecCCCCCc--ccccccCCCCCCEEeccCCc
Q 042011 199 --------------GNMNFLRVLDLSNNQLTGEIPEHLAVGCVNLESLALSNNSLEGH--MFSRNFNLTNLEWLQLGGNR 262 (361)
Q Consensus 199 --------------~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~--~~~~~~~~~~L~~L~L~~n~ 262 (361)
..+++|++|++++|.+++.+|..+. .+++|++|++++|++++. .+..+..+++|+.|++++|+
T Consensus 336 L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~ 414 (562)
T 3a79_B 336 LSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCS-TLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNS 414 (562)
T ss_dssp EEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCC-SCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSC
T ss_pred EEccCCCcccccCccCCCCceEEECCCCccccchhhhhc-ccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCc
Confidence 6778999999999999966776664 899999999999999974 34678899999999999999
Q ss_pred CCccch-hhhhcCCCCCEEECcCCcccccCCCCCCCcCcceeeccccccccCCcc
Q 042011 263 FVGEIP-QSLSKCSSLEGLYLNNNSLSGNVNVPSSPANTLFNLSQNSRRFTSSIS 316 (361)
Q Consensus 263 l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~~ 316 (361)
+++.+| ..+..+++|++|++++|++++.+|..+. ++|++|++++|+++. +|
T Consensus 415 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~-ip 466 (562)
T 3a79_B 415 LNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMS-IP 466 (562)
T ss_dssp CBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCC-CC
T ss_pred CCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcc-cC
Confidence 997455 4588899999999999999987776654 799999999999985 44
No 28
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.6e-35 Score=284.05 Aligned_cols=141 Identities=25% Similarity=0.204 Sum_probs=104.4
Q ss_pred cCCCccEEEecCCcccccc--CccccCCCCCCEEeccCCcC-----------------------ccccchhhhhCCCCCc
Q 042011 176 ILPSLKFFNISMNALDGSI--PSSFGNMNFLRVLDLSNNQL-----------------------TGEIPEHLAVGCVNLE 230 (361)
Q Consensus 176 ~l~~L~~L~L~~n~l~~~~--~~~l~~~~~L~~L~l~~n~l-----------------------~~~~~~~~~~~~~~L~ 230 (361)
.+++|++|++++|.+++.. +..+..+++|++|++++|.+ .+..+...+..+++|+
T Consensus 345 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 424 (570)
T 2z63_A 345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI 424 (570)
T ss_dssp BCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCC
T ss_pred cCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCC
Confidence 3688999999999987432 44455555555555555544 4222323334667777
Q ss_pred EEEeecCCCCCcccccccCCCCCCEEeccCCcCC-ccchhhhhcCCCCCEEECcCCcccccCCCCCCCcCcceeeccccc
Q 042011 231 SLALSNNSLEGHMFSRNFNLTNLEWLQLGGNRFV-GEIPQSLSKCSSLEGLYLNNNSLSGNVNVPSSPANTLFNLSQNSR 309 (361)
Q Consensus 231 ~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~L~~l~l~~N 309 (361)
+|++++|.+.+..+..+..+++|+.|++++|+++ +.+|..+..+++|+.|++++|++++..|..+..+++|++|++++|
T Consensus 425 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 504 (570)
T 2z63_A 425 YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASN 504 (570)
T ss_dssp EEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCC
Confidence 7777777777767777778888888888888886 467788888889999999999998887888888999999999999
Q ss_pred cccCCcc
Q 042011 310 RFTSSIS 316 (361)
Q Consensus 310 ~~~~~~~ 316 (361)
++++..+
T Consensus 505 ~l~~~~~ 511 (570)
T 2z63_A 505 QLKSVPD 511 (570)
T ss_dssp CCSCCCT
T ss_pred cCCCCCH
Confidence 9887655
No 29
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=3.7e-35 Score=291.52 Aligned_cols=302 Identities=18% Similarity=0.249 Sum_probs=204.2
Q ss_pred CCCCCeEeCCCccccCcCChhhhhccCCCCeEeCcCCc-ccc-cCCccccc-------CCCCCcEEEccCCCccccccc-
Q 042011 1 MTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNH-FQI-PISLEPLF-------NHSRLKIFYADNNELNAEITQ- 70 (361)
Q Consensus 1 l~~L~~L~L~~n~i~~~i~~~~~~~l~~L~~L~Ls~n~-l~~-~~~~~~~~-------~l~~L~~L~l~~n~~~~~~~~- 70 (361)
|++|++|+|++|++.+.+|. .|.++++|++|+|++|+ +++ .+| ..+. .+++|++|++++|.++ .++.
T Consensus 490 L~~L~~L~Ls~N~l~~~iP~-~l~~L~~L~~L~Ls~N~~lsg~~iP-~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~ 566 (876)
T 4ecn_A 490 LKDLTDVELYNCPNMTQLPD-FLYDLPELQSLNIACNRGISAAQLK-ADWTRLADDEDTGPKIQIFYMGYNNLE-EFPAS 566 (876)
T ss_dssp CTTCCEEEEESCTTCCSCCG-GGGGCSSCCEEECTTCTTSCHHHHH-HHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCH
T ss_pred CCCCCEEECcCCCCCccChH-HHhCCCCCCEEECcCCCCcccccch-HHHHhhhhcccccCCccEEEeeCCcCC-ccCCh
Confidence 35566666666666556665 56666666666666665 554 333 1222 2235555555555544 2222
Q ss_pred -cc-------------------ccccCcccccEEeccCCCCCCCCCchhhcCCCC-ccEEEecCCcccCCcChHHHhcCC
Q 042011 71 -SH-------------------SLIAPNFQLNSLSLSSDYGDGFIFPKFLYHQHD-LALVDLSHIKMNGEFPTWLLENNT 129 (361)
Q Consensus 71 -~~-------------------~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~-L~~L~l~~n~l~~~~~~~~~~~~~ 129 (361)
.+ +.+..+.+|++|++ ++|.+. .+|..+..+++ |+.|++++|.++ .+|.. +...+
T Consensus 567 ~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~L-s~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~-~~~~~ 642 (876)
T 4ecn_A 567 ASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKL-DYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNI-FNAKS 642 (876)
T ss_dssp HHHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEEC-CSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSC-CCTTC
T ss_pred hhhhcCCCCCEEECCCCCcccchhhcCCCcceEEEC-cCCccc-cchHHHhhccccCCEEECcCCCCC-cCchh-hhccc
Confidence 10 01333445555555 444444 34444555555 555555555554 44433 22222
Q ss_pred --CCcEEEecCCcccCCCCCC---cC--CCCCcCEEEccCCcCCccCChhhhccCCCccEEEecCCccccccCccccC--
Q 042011 130 --KLETLFLVNDSLTGPFRLP---IH--SHRWLEFLDISNNNFRCHIPVEIGDILPSLKFFNISMNALDGSIPSSFGN-- 200 (361)
Q Consensus 130 --~L~~L~l~~n~l~~~~~~~---~~--~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~-- 200 (361)
+|+.|++++|.+.+..|.. +. ..++|+.|++++|+++ .+|..++..+++|+.|++++|.++ .+|..+..
T Consensus 643 ~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~ 720 (876)
T 4ecn_A 643 VYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPK 720 (876)
T ss_dssp SSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCT
T ss_pred cCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccc
Confidence 2555555555555433321 11 2347888888888888 788888866899999999999998 56554433
Q ss_pred ------CCCCCEEeccCCcCccccchhhh-hCCCCCcEEEeecCCCCCcccccccCCCCCCEEeccC------CcCCccc
Q 042011 201 ------MNFLRVLDLSNNQLTGEIPEHLA-VGCVNLESLALSNNSLEGHMFSRNFNLTNLEWLQLGG------NRFVGEI 267 (361)
Q Consensus 201 ------~~~L~~L~l~~n~l~~~~~~~~~-~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~------n~l~~~~ 267 (361)
+++|++|++++|.++ .+|..++ ..+++|+.|++++|++++ .|..+..+++|+.|++++ |++.+.+
T Consensus 721 ~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~i 798 (876)
T 4ecn_A 721 DGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQW 798 (876)
T ss_dssp TSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCC
T ss_pred cccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccC
Confidence 238999999999999 8998775 479999999999999998 688888999999999976 7788889
Q ss_pred hhhhhcCCCCCEEECcCCcccccCCCCCCCcCcceeeccccccccCCcc
Q 042011 268 PQSLSKCSSLEGLYLNNNSLSGNVNVPSSPANTLFNLSQNSRRFTSSIS 316 (361)
Q Consensus 268 ~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~~ 316 (361)
|..+..+++|+.|++++|++ +.+|..+. ++|+.|++++|++...-+
T Consensus 799 p~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~ 844 (876)
T 4ecn_A 799 PTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDV 844 (876)
T ss_dssp CTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEEC
T ss_pred hHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccCh
Confidence 99999999999999999999 57777765 699999999999976443
No 30
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=2.3e-35 Score=283.13 Aligned_cols=303 Identities=17% Similarity=0.180 Sum_probs=237.7
Q ss_pred CCCCeEeCCCccccCcCChhhhhccCCCCeEeCcCCcccccCCcccccCCCCCcEEEccCCCcccccccccccccCcccc
Q 042011 2 TSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLIAPNFQL 81 (361)
Q Consensus 2 ~~L~~L~L~~n~i~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L 81 (361)
++|++|++++|++++..|. .|.++++|++|++++|++++ ++..+|.++++|++|++++|.+++..+.. +..+.+|
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~---~~~l~~L 100 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHG-DLRACANLQVLILKSSRINT-IEGDAFYSLGSLEHLDLSDNHLSSLSSSW---FGPLSSL 100 (549)
T ss_dssp TTCCEEECCSSCCCEECSS-TTSSCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECTTSCCCSCCHHH---HTTCTTC
T ss_pred CCccEEECcCCccCccChh-hhhcCCcccEEECCCCCcCc-cChhhccccccCCEEECCCCccCccCHHH---hccCCCC
Confidence 4799999999999844455 89999999999999999984 44468999999999999999998766554 5667799
Q ss_pred cEEeccCCCCCCCC-CchhhcCCCCccEEEecCCcccCCcChHHHhcCCCCcEEEecCCcccCCCCCCcCCCCCcCEEEc
Q 042011 82 NSLSLSSDYGDGFI-FPKFLYHQHDLALVDLSHIKMNGEFPTWLLENNTKLETLFLVNDSLTGPFRLPIHSHRWLEFLDI 160 (361)
Q Consensus 82 ~~L~l~~~~~~~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 160 (361)
++|++ ++|.+... .+..+..+++|++|++++|.+.+.++...+.++++|++|++++|.+.+..|..+..+++|++|++
T Consensus 101 ~~L~L-s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l 179 (549)
T 2z81_A 101 KYLNL-MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTL 179 (549)
T ss_dssp CEEEC-TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEE
T ss_pred cEEEC-CCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEec
Confidence 99999 88888763 46678999999999999998555776555889999999999999999888888888888888888
Q ss_pred cCCcCCccCChhhhccCCCccEEEecCCcccccc--Ccc-----------------------------------------
Q 042011 161 SNNNFRCHIPVEIGDILPSLKFFNISMNALDGSI--PSS----------------------------------------- 197 (361)
Q Consensus 161 ~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~----------------------------------------- 197 (361)
++|.+. .++..++..+++|++|++++|.+++.. +..
T Consensus 180 ~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l 258 (549)
T 2z81_A 180 HLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEF 258 (549)
T ss_dssp ECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEE
T ss_pred ccCccc-ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccc
Confidence 887776 666665555677777777777765421 000
Q ss_pred -----------------------------------------------ccCCCCCCEEeccCCcCccccchhhhhCCCCCc
Q 042011 198 -----------------------------------------------FGNMNFLRVLDLSNNQLTGEIPEHLAVGCVNLE 230 (361)
Q Consensus 198 -----------------------------------------------l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~ 230 (361)
+...++|+++++++|.+. .+|..++..+++|+
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~ 337 (549)
T 2z81_A 259 DDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLE 337 (549)
T ss_dssp ESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCC
T ss_pred ccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCcccc
Confidence 001235667777777776 77877766789999
Q ss_pred EEEeecCCCCCccc---ccccCCCCCCEEeccCCcCCccch--hhhhcCCCCCEEECcCCcccccCCCCCCCcCcceeec
Q 042011 231 SLALSNNSLEGHMF---SRNFNLTNLEWLQLGGNRFVGEIP--QSLSKCSSLEGLYLNNNSLSGNVNVPSSPANTLFNLS 305 (361)
Q Consensus 231 ~L~L~~n~l~~~~~---~~~~~~~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~L~~l~ 305 (361)
+|++++|++++..+ ..++.+++|+.|++++|++++..+ ..+..+++|++|++++|+++ .+|..+..+++|++|+
T Consensus 338 ~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~ 416 (549)
T 2z81_A 338 FLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLN 416 (549)
T ss_dssp EEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEE
T ss_pred EEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEE
Confidence 99999999887553 346778899999999999985432 56888899999999999998 5677777788888888
Q ss_pred cccccccC
Q 042011 306 QNSRRFTS 313 (361)
Q Consensus 306 l~~N~~~~ 313 (361)
+++|.++.
T Consensus 417 Ls~N~l~~ 424 (549)
T 2z81_A 417 LSSTGIRV 424 (549)
T ss_dssp CTTSCCSC
T ss_pred CCCCCccc
Confidence 88888764
No 31
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=9e-34 Score=254.83 Aligned_cols=289 Identities=18% Similarity=0.173 Sum_probs=165.7
Q ss_pred CCCeEeCCCccccCcCChhhhhccCCCCeEeCcCCcccccCCcccccCCCCCcEEEccCCCcccccccccccccCccccc
Q 042011 3 SLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLIAPNFQLN 82 (361)
Q Consensus 3 ~L~~L~L~~n~i~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~ 82 (361)
+++.++++++.++ .+|. .+ .+++++|++++|+++ .++...|.++++|++|++++|.+++..+.. +..+.+|+
T Consensus 32 ~l~~l~~~~~~l~-~lp~-~~--~~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~---~~~l~~L~ 103 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPK-DL--PPDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGA---FAPLVKLE 103 (330)
T ss_dssp ETTEEECTTSCCC-SCCC-SC--CTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCCCBCTTT---TTTCTTCC
T ss_pred CCeEEEecCCCcc-ccCc-cC--CCCCeEEECCCCcCC-EeChhhhccCCCCCEEECCCCcCCeeCHHH---hcCCCCCC
Confidence 4566666666665 5554 22 256666666666666 344345666666666666666666544433 34455666
Q ss_pred EEeccCCCCCCCCCchhhcCCCCccEEEecCCcccCCcChHHHhcCCCCcEEEecCCcccC--CCCCCcCCCCCcCEEEc
Q 042011 83 SLSLSSDYGDGFIFPKFLYHQHDLALVDLSHIKMNGEFPTWLLENNTKLETLFLVNDSLTG--PFRLPIHSHRWLEFLDI 160 (361)
Q Consensus 83 ~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l 160 (361)
+|++ ++|.++. .|..+. ++|++|++++|.++ .++...+.++++|++|++++|.+.. ..+..+..+++|++|++
T Consensus 104 ~L~L-s~n~l~~-l~~~~~--~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l 178 (330)
T 1xku_A 104 RLYL-SKNQLKE-LPEKMP--KTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRI 178 (330)
T ss_dssp EEEC-CSSCCSB-CCSSCC--TTCCEEECCSSCCC-BBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEEC
T ss_pred EEEC-CCCcCCc-cChhhc--ccccEEECCCCccc-ccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEEC
Confidence 6666 6666553 232222 56666666666665 4444445666666666666666642 44555666666666666
Q ss_pred cCCcCCccCChhhhccCCCccEEEecCCccccccCccccCCCCCCEEeccCCcCccccchhhhhCCCCCcEEEeecCCCC
Q 042011 161 SNNNFRCHIPVEIGDILPSLKFFNISMNALDGSIPSSFGNMNFLRVLDLSNNQLTGEIPEHLAVGCVNLESLALSNNSLE 240 (361)
Q Consensus 161 ~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~ 240 (361)
++|.++ .+|..++ ++|++|++++|.+++..+..+..+++|++|++++|.++ .++...+..+++|++|++++|+++
T Consensus 179 ~~n~l~-~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~ 253 (330)
T 1xku_A 179 ADTNIT-TIPQGLP---PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS-AVDNGSLANTPHLRELHLNNNKLV 253 (330)
T ss_dssp CSSCCC-SCCSSCC---TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCC-EECTTTGGGSTTCCEEECCSSCCS
T ss_pred CCCccc-cCCcccc---ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCc-eeChhhccCCCCCCEEECCCCcCc
Confidence 666665 5554432 46666666666666555556666666666666666666 333322335666666666666665
Q ss_pred CcccccccCCCCCCEEeccCCcCCccchhhhhc------CCCCCEEECcCCcccc--cCCCCCCCcCcceeecccccc
Q 042011 241 GHMFSRNFNLTNLEWLQLGGNRFVGEIPQSLSK------CSSLEGLYLNNNSLSG--NVNVPSSPANTLFNLSQNSRR 310 (361)
Q Consensus 241 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~------l~~L~~L~l~~N~l~~--~~~~~~~~~~~L~~l~l~~N~ 310 (361)
. .|..+..+++|+.|++++|++++..+..|.. .++++.+++++|.+.. ..|..|..+.+++.+++++|+
T Consensus 254 ~-lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 254 K-VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp S-CCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred c-CChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 4 4455556666666666666666544444432 2456666666666543 334455556666666666553
No 32
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=5.8e-34 Score=256.28 Aligned_cols=267 Identities=18% Similarity=0.180 Sum_probs=159.9
Q ss_pred CCCeEeCcCCcccccCCcccccCCCCCcEEEccCCCcccccccccccccCcccccEEeccCCCCCCCCCchhhcCCCCcc
Q 042011 28 SIEELMLSNNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLIAPNFQLNSLSLSSDYGDGFIFPKFLYHQHDLA 107 (361)
Q Consensus 28 ~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~ 107 (361)
+++.++++++.++ .+|. .+ .++|++|++++|.+++..+.. +..+.+|++|++ ++|.++...+..+..+++|+
T Consensus 34 ~l~~l~~~~~~l~-~ip~-~~--~~~l~~L~l~~n~i~~~~~~~---~~~l~~L~~L~L-~~n~l~~~~~~~~~~l~~L~ 105 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPK-EI--SPDTTLLDLQNNDISELRKDD---FKGLQHLYALVL-VNNKISKIHEKAFSPLRKLQ 105 (332)
T ss_dssp ETTEEECCSSCCS-SCCS-CC--CTTCCEEECCSSCCCEECTTT---TTTCTTCCEEEC-CSSCCCEECGGGSTTCTTCC
T ss_pred cCCEEECCCCCcc-ccCC-CC--CCCCeEEECCCCcCCccCHhH---hhCCCCCcEEEC-CCCccCccCHhHhhCcCCCC
Confidence 5666666666665 5552 22 246666666666665544333 344556666666 66666665566666666666
Q ss_pred EEEecCCcccCCcChHHHhcCCCCcEEEecCCcccCCCCCCcCCCCCcCEEEccCCcCCc-cCChhhhccCCCccEEEec
Q 042011 108 LVDLSHIKMNGEFPTWLLENNTKLETLFLVNDSLTGPFRLPIHSHRWLEFLDISNNNFRC-HIPVEIGDILPSLKFFNIS 186 (361)
Q Consensus 108 ~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~~l~~L~~L~L~ 186 (361)
+|++++|.++ .+|..++ ++|++|++++|++.+..+..+..+++|++|++++|.++. ......+..+ +|++|+++
T Consensus 106 ~L~L~~n~l~-~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~ 180 (332)
T 2ft3_A 106 KLYISKNHLV-EIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRIS 180 (332)
T ss_dssp EEECCSSCCC-SCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCC
T ss_pred EEECCCCcCC-ccCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECc
Confidence 6666666665 5554422 566666666666665555556666666666666666641 1222222223 66666666
Q ss_pred CCccccccCccccCCCCCCEEeccCCcCccccchhhhhCCCCCcEEEeecCCCCCcccccccCCCCCCEEeccCCcCCcc
Q 042011 187 MNALDGSIPSSFGNMNFLRVLDLSNNQLTGEIPEHLAVGCVNLESLALSNNSLEGHMFSRNFNLTNLEWLQLGGNRFVGE 266 (361)
Q Consensus 187 ~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~ 266 (361)
+|.++ .+|..+. ++|++|++++|.++ .++...+..+++|++|++++|++++..+..+..+++|+.|++++|+++ .
T Consensus 181 ~n~l~-~l~~~~~--~~L~~L~l~~n~i~-~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~ 255 (332)
T 2ft3_A 181 EAKLT-GIPKDLP--ETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-R 255 (332)
T ss_dssp SSBCS-SCCSSSC--SSCSCCBCCSSCCC-CCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-B
T ss_pred CCCCC-ccCcccc--CCCCEEECCCCcCC-ccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-e
Confidence 66666 3444332 56666667666666 333222335666677777776666655556666666777777777666 5
Q ss_pred chhhhhcCCCCCEEECcCCcccccCCCCCCC------cCcceeecccccccc
Q 042011 267 IPQSLSKCSSLEGLYLNNNSLSGNVNVPSSP------ANTLFNLSQNSRRFT 312 (361)
Q Consensus 267 ~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~------~~~L~~l~l~~N~~~ 312 (361)
+|..+..+++|+.|++++|++++..+..|.. ...|+.+++.+|++.
T Consensus 256 lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 256 VPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp CCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred cChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCccc
Confidence 5656666667777777777666655555543 245666667766665
No 33
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=4.7e-33 Score=261.71 Aligned_cols=282 Identities=25% Similarity=0.303 Sum_probs=128.4
Q ss_pred CCCCeEeCCCccccCcCChhhhhccCCCCeEeCcCCcccccCCcccccCCCCCcEEEccCCCcccccccccccccCcccc
Q 042011 2 TSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLIAPNFQL 81 (361)
Q Consensus 2 ~~L~~L~L~~n~i~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L 81 (361)
++|++|++++|.++ .++. +.++++|++|++++|+++ .++ .+.++++|++|++++|.+++..+ +..+.+|
T Consensus 68 ~~L~~L~Ls~n~l~-~~~~--~~~l~~L~~L~l~~n~l~-~~~--~~~~l~~L~~L~L~~n~l~~~~~-----~~~l~~L 136 (466)
T 1o6v_A 68 NNLTQINFSNNQLT-DITP--LKNLTKLVDILMNNNQIA-DIT--PLANLTNLTGLTLFNNQITDIDP-----LKNLTNL 136 (466)
T ss_dssp TTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCC-CCG--GGTTCTTCCEEECCSSCCCCCGG-----GTTCTTC
T ss_pred cCCCEEECCCCccC-Cchh--hhccccCCEEECCCCccc-cCh--hhcCCCCCCEEECCCCCCCCChH-----HcCCCCC
Confidence 45556666666555 4443 555555555555555554 222 14555555555555555443221 2223334
Q ss_pred cEEeccCCCCCCCCC-------------------chhhcCCCCccEEEecCCcccCCcChHHHhcCCCCcEEEecCCccc
Q 042011 82 NSLSLSSDYGDGFIF-------------------PKFLYHQHDLALVDLSHIKMNGEFPTWLLENNTKLETLFLVNDSLT 142 (361)
Q Consensus 82 ~~L~l~~~~~~~~~~-------------------~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~ 142 (361)
++|++ ++|.+.+.. ...+..+++|+.|++++|.++ .++. +..+++|++|++++|.+.
T Consensus 137 ~~L~l-~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~--l~~l~~L~~L~l~~n~l~ 212 (466)
T 1o6v_A 137 NRLEL-SSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVS-DISV--LAKLTNLESLIATNNQIS 212 (466)
T ss_dssp SEEEE-EEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCC-CCGG--GGGCTTCSEEECCSSCCC
T ss_pred CEEEC-CCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCC-CChh--hccCCCCCEEEecCCccc
Confidence 44444 333322210 011333444444444444443 2221 344444444444444444
Q ss_pred CCCCCCcCCCCCcCEEEccCCcCCccCChhhhccCCCccEEEecCCccccccC---------------------ccccCC
Q 042011 143 GPFRLPIHSHRWLEFLDISNNNFRCHIPVEIGDILPSLKFFNISMNALDGSIP---------------------SSFGNM 201 (361)
Q Consensus 143 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---------------------~~l~~~ 201 (361)
+..+ +..+++|++|++++|+++ .++ .+. .+++|+.|++++|.+++..+ . +..+
T Consensus 213 ~~~~--~~~l~~L~~L~l~~n~l~-~~~-~l~-~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l 286 (466)
T 1o6v_A 213 DITP--LGILTNLDELSLNGNQLK-DIG-TLA-SLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISP-LAGL 286 (466)
T ss_dssp CCGG--GGGCTTCCEEECCSSCCC-CCG-GGG-GCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGG-GTTC
T ss_pred cccc--ccccCCCCEEECCCCCcc-cch-hhh-cCCCCCEEECCCCccccchhhhcCCCCCEEECCCCccCcccc-ccCC
Confidence 3222 333444444444444443 221 111 23444444444444432221 1 3444
Q ss_pred CCCCEEeccCCcCccccchhhhhCCCCCcEEEeecCCCCCcccccccCCCCCCEEeccCCcCCccchhhhhcCCCCCEEE
Q 042011 202 NFLRVLDLSNNQLTGEIPEHLAVGCVNLESLALSNNSLEGHMFSRNFNLTNLEWLQLGGNRFVGEIPQSLSKCSSLEGLY 281 (361)
Q Consensus 202 ~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 281 (361)
++|++|++++|.+. .++. + ..+++|+.|++++|++++..+ +..+++|+.|++++|++++. ..+..+++|+.|+
T Consensus 287 ~~L~~L~L~~n~l~-~~~~-~-~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~ 359 (466)
T 1o6v_A 287 TALTNLELNENQLE-DISP-I-SNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLS 359 (466)
T ss_dssp TTCSEEECCSSCCS-CCGG-G-GGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEE
T ss_pred CccCeEEcCCCccc-Cchh-h-cCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEe
Confidence 44444444444444 2222 1 244555555555555544332 34455555555555555532 2455555666666
Q ss_pred CcCCcccccCCCCCCCcCcceeeccccccccC
Q 042011 282 LNNNSLSGNVNVPSSPANTLFNLSQNSRRFTS 313 (361)
Q Consensus 282 l~~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~ 313 (361)
+++|++++..| +..+++|+.|++++|++++
T Consensus 360 l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 360 AGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp CCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred CCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 66666555444 5555666666666666655
No 34
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=2.2e-33 Score=281.89 Aligned_cols=303 Identities=18% Similarity=0.187 Sum_probs=251.8
Q ss_pred CCCCCeEeCCCccccCcCChhhhhccCCCCeEeCcCCcccccCCcccccCCCCCcEEEccCCCcccccccccccccCccc
Q 042011 1 MTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLIAPNFQ 80 (361)
Q Consensus 1 l~~L~~L~L~~n~i~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~ 80 (361)
+++|++|+|++|...+.++...|.++++|++|+|++|.+++..| ..|.++++|++|++++|.+++..+.. ..+..+.+
T Consensus 47 l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~~~L~~ 124 (844)
T 3j0a_A 47 LEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHP-DAFQGLFHLFELRLYFCGLSDAVLKD-GYFRNLKA 124 (844)
T ss_dssp CCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECT-TSSCSCSSCCCEECTTCCCSSCCSTT-CCCSSCSS
T ss_pred cccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCH-hHccCCcccCEeeCcCCCCCcccccC-ccccccCC
Confidence 57899999999976668865589999999999999999985545 78999999999999999998644332 12567789
Q ss_pred ccEEeccCCCCCCCCCc-hhhcCCCCccEEEecCCcccCCcChHHHhcC--CCCcEEEecCCcccCCCCCCcCCCCC---
Q 042011 81 LNSLSLSSDYGDGFIFP-KFLYHQHDLALVDLSHIKMNGEFPTWLLENN--TKLETLFLVNDSLTGPFRLPIHSHRW--- 154 (361)
Q Consensus 81 L~~L~l~~~~~~~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~--- 154 (361)
|++|++ ++|.+.+..+ ..|+++++|++|++++|.+++..+.. +..+ ++|+.|++++|.+.+..+..+..+++
T Consensus 125 L~~L~L-s~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~-l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~ 202 (844)
T 3j0a_A 125 LTRLDL-SKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHE-LEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFR 202 (844)
T ss_dssp CCEEEE-ESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGG-GHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTT
T ss_pred CCEEEC-CCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHH-cccccCCccceEECCCCccccccccchhhcCCccc
Confidence 999999 8888877654 57999999999999999998666665 5666 89999999999998877777666655
Q ss_pred ---cCEEEccCCcCCccCChhhhcc-------------------------------------CCCccEEEecCCcccccc
Q 042011 155 ---LEFLDISNNNFRCHIPVEIGDI-------------------------------------LPSLKFFNISMNALDGSI 194 (361)
Q Consensus 155 ---L~~L~l~~n~l~~~~~~~~~~~-------------------------------------l~~L~~L~L~~n~l~~~~ 194 (361)
|+.|++++|.+++..+..+... .++|+.|++++|.+.+..
T Consensus 203 ~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~ 282 (844)
T 3j0a_A 203 NMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLN 282 (844)
T ss_dssp TCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEEC
T ss_pred cCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccC
Confidence 9999999998775555433321 267999999999999888
Q ss_pred CccccCCCCCCEEeccCCcCccccchhhhhCCCCCcEEEeecCCCCCcccccccCCCCCCEEeccCCcCCccchhhhhcC
Q 042011 195 PSSFGNMNFLRVLDLSNNQLTGEIPEHLAVGCVNLESLALSNNSLEGHMFSRNFNLTNLEWLQLGGNRFVGEIPQSLSKC 274 (361)
Q Consensus 195 ~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l 274 (361)
+..|..+++|++|++++|.+. .++...+..+++|++|++++|.+++..+..+..+++|+.|++++|++.+..+..|..+
T Consensus 283 ~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l 361 (844)
T 3j0a_A 283 SRVFETLKDLKVLNLAYNKIN-KIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFL 361 (844)
T ss_dssp SCCSSSCCCCCEEEEESCCCC-EECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSC
T ss_pred hhhhhcCCCCCEEECCCCcCC-CCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCC
Confidence 889999999999999999998 5544444589999999999999999888999999999999999999998777889999
Q ss_pred CCCCEEECcCCcccccCCCCCCCcCcceeeccccccccC
Q 042011 275 SSLEGLYLNNNSLSGNVNVPSSPANTLFNLSQNSRRFTS 313 (361)
Q Consensus 275 ~~L~~L~l~~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~ 313 (361)
++|+.|++++|.+++.. .+++|+.+++++|+++.
T Consensus 362 ~~L~~L~Ls~N~l~~i~-----~~~~L~~L~l~~N~l~~ 395 (844)
T 3j0a_A 362 EKLQTLDLRDNALTTIH-----FIPSIPDIFLSGNKLVT 395 (844)
T ss_dssp CCCCEEEEETCCSCCCS-----SCCSCSEEEEESCCCCC
T ss_pred CCCCEEECCCCCCCccc-----CCCCcchhccCCCCccc
Confidence 99999999999998532 26667777777777763
No 35
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=2.5e-34 Score=256.28 Aligned_cols=255 Identities=25% Similarity=0.275 Sum_probs=216.9
Q ss_pred CCCcEEEccCCCccc--ccccccccccCcccccEEeccC-CCCCCCCCchhhcCCCCccEEEecCCcccCCcChHHHhcC
Q 042011 52 SRLKIFYADNNELNA--EITQSHSLIAPNFQLNSLSLSS-DYGDGFIFPKFLYHQHDLALVDLSHIKMNGEFPTWLLENN 128 (361)
Q Consensus 52 ~~L~~L~l~~n~~~~--~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 128 (361)
.+++.|++++|.+.+ ..+.. +..+.+|++|++ + ++.+.+..|..+..+++|++|++++|.+++.+|.. +.++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~---l~~l~~L~~L~L-~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~-~~~l 124 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSS---LANLPYLNFLYI-GGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDF-LSQI 124 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGG---GGGCTTCSEEEE-EEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGG-GGGC
T ss_pred ceEEEEECCCCCccCCcccChh---HhCCCCCCeeeC-CCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHH-HhCC
Confidence 467777777777765 44433 455567777777 5 46666677888999999999999999998778876 7889
Q ss_pred CCCcEEEecCCcccCCCCCCcCCCCCcCEEEccCCcCCccCChhhhccCC-CccEEEecCCccccccCccccCCCCCCEE
Q 042011 129 TKLETLFLVNDSLTGPFRLPIHSHRWLEFLDISNNNFRCHIPVEIGDILP-SLKFFNISMNALDGSIPSSFGNMNFLRVL 207 (361)
Q Consensus 129 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~l~~~~~L~~L 207 (361)
++|++|++++|.+.+..|..+..+++|++|++++|++++.+|..+.. ++ +|++|++++|.+++.+|..+..++ |++|
T Consensus 125 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~-l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L 202 (313)
T 1ogq_A 125 KTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS-FSKLFTSMTISRNRLTGKIPPTFANLN-LAFV 202 (313)
T ss_dssp TTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGC-CCTTCCEEECCSSEEEEECCGGGGGCC-CSEE
T ss_pred CCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhh-hhhcCcEEECcCCeeeccCChHHhCCc-ccEE
Confidence 99999999999999888999999999999999999998788888877 55 999999999999988899898887 9999
Q ss_pred eccCCcCccccchhhhhCCCCCcEEEeecCCCCCcccccccCCCCCCEEeccCCcCCccchhhhhcCCCCCEEECcCCcc
Q 042011 208 DLSNNQLTGEIPEHLAVGCVNLESLALSNNSLEGHMFSRNFNLTNLEWLQLGGNRFVGEIPQSLSKCSSLEGLYLNNNSL 287 (361)
Q Consensus 208 ~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l 287 (361)
++++|.+++..|..+ ..+++|+.|++++|.+++..+. +..+++|++|++++|++++.+|..+..+++|+.|++++|++
T Consensus 203 ~Ls~N~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 280 (313)
T 1ogq_A 203 DLSRNMLEGDASVLF-GSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL 280 (313)
T ss_dssp ECCSSEEEECCGGGC-CTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEE
T ss_pred ECcCCcccCcCCHHH-hcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcc
Confidence 999999986655555 4899999999999999875554 78899999999999999989999999999999999999999
Q ss_pred cccCCCCCCCcCcceeeccccccccCCcc
Q 042011 288 SGNVNVPSSPANTLFNLSQNSRRFTSSIS 316 (361)
Q Consensus 288 ~~~~~~~~~~~~~L~~l~l~~N~~~~~~~ 316 (361)
++.+|.. ..+++|+.+++.+|+..+..|
T Consensus 281 ~~~ip~~-~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 281 CGEIPQG-GNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp EEECCCS-TTGGGSCGGGTCSSSEEESTT
T ss_pred cccCCCC-ccccccChHHhcCCCCccCCC
Confidence 9988876 889999999999999655444
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=1.5e-33 Score=259.20 Aligned_cols=304 Identities=20% Similarity=0.251 Sum_probs=241.6
Q ss_pred ccCCCCeEeCcCCcccccCCcccccCCCCCcEEEccCCCcccccccccccccCcccccEEeccCCCCCCCCCchhhcCCC
Q 042011 25 HLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLIAPNFQLNSLSLSSDYGDGFIFPKFLYHQH 104 (361)
Q Consensus 25 ~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~ 104 (361)
.+++++.+++++|.++ .+|...|..+++|++|++++|.+++..+.. +..+.+|++|++ ++|.+.+..+..+..++
T Consensus 43 ~l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~---~~~l~~L~~L~L-~~n~l~~~~~~~~~~l~ 117 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYA---FAYAHTIQKLYM-GFNAIRYLPPHVFQNVP 117 (390)
T ss_dssp GGCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTT---TTTCTTCCEEEC-CSSCCCCCCTTTTTTCT
T ss_pred ccCCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhh---ccCCCCcCEEEC-CCCCCCcCCHHHhcCCC
Confidence 4689999999999998 788667899999999999999998766554 566779999999 99999988888899999
Q ss_pred CccEEEecCCcccCCcChHHHhcCCCCcEEEecCCcccCCCCCCcCCCCCcCEEEccCCcCCccCChhhhccCCCccEEE
Q 042011 105 DLALVDLSHIKMNGEFPTWLLENNTKLETLFLVNDSLTGPFRLPIHSHRWLEFLDISNNNFRCHIPVEIGDILPSLKFFN 184 (361)
Q Consensus 105 ~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 184 (361)
+|++|++++|.++ .+|...+.++++|++|++++|.+.+..+..+..+++|++|++++|+++ .++.. .+++|+.|+
T Consensus 118 ~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~---~l~~L~~L~ 192 (390)
T 3o6n_A 118 LLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDLS---LIPSLFHAN 192 (390)
T ss_dssp TCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCS-BCCGG---GCTTCSEEE
T ss_pred CCCEEECCCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCC-ccccc---cccccceee
Confidence 9999999999998 777776789999999999999999888888999999999999999998 55432 245666655
Q ss_pred ecCCcccc------------------ccCccccCCCCCCEEeccCCcCccccchhhhhCCCCCcEEEeecCCCCCccccc
Q 042011 185 ISMNALDG------------------SIPSSFGNMNFLRVLDLSNNQLTGEIPEHLAVGCVNLESLALSNNSLEGHMFSR 246 (361)
Q Consensus 185 L~~n~l~~------------------~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 246 (361)
+++|.+++ .++. ...++|++|++++|.++ ..+ .+ ..+++|++|++++|.+++..+..
T Consensus 193 l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~--~~~~~L~~L~l~~n~l~-~~~-~l-~~l~~L~~L~Ls~n~l~~~~~~~ 267 (390)
T 3o6n_A 193 VSYNLLSTLAIPIAVEELDASHNSINVVRG--PVNVELTILKLQHNNLT-DTA-WL-LNYPGLVEVDLSYNELEKIMYHP 267 (390)
T ss_dssp CCSSCCSEEECCSSCSEEECCSSCCCEEEC--CCCSSCCEEECCSSCCC-CCG-GG-GGCTTCSEEECCSSCCCEEESGG
T ss_pred cccccccccCCCCcceEEECCCCeeeeccc--cccccccEEECCCCCCc-ccH-HH-cCCCCccEEECCCCcCCCcChhH
Confidence 55555442 1122 12457888888888887 433 33 37888999999999998877888
Q ss_pred ccCCCCCCEEeccCCcCCccchhhhhcCCCCCEEECcCCcccccCCCCCCCcCcceeeccccccccCCcccccccccccc
Q 042011 247 NFNLTNLEWLQLGGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGNVNVPSSPANTLFNLSQNSRRFTSSISHSHLLNLHGI 326 (361)
Q Consensus 247 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~~~~~~~~~~~~ 326 (361)
+..+++|+.|++++|++++ ++..+..+++|++|++++|++++ +|..+..+++|++|++++|+++.. +...+..++.+
T Consensus 268 ~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~N~i~~~-~~~~~~~L~~L 344 (390)
T 3o6n_A 268 FVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIVTL-KLSTHHTLKNL 344 (390)
T ss_dssp GTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCCC-CGGGHHHHTTCSEEECCSSCCCCC-CCCTTCCCSEE
T ss_pred ccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCccee-cCccccccCcCCEEECCCCcccee-CchhhccCCEE
Confidence 8889999999999999884 56666778899999999999884 555677788999999999998764 44445555443
Q ss_pred hhhhHHHhhccchHHHHHHHHHhhccc
Q 042011 327 CKEYAKEFARNMPRICEEYAAYLNSTN 353 (361)
Q Consensus 327 ~~~~~~~~~~~~~~~c~~~~~~~~~~~ 353 (361)
. ..++|+.|++..+|+....
T Consensus 345 ~-------l~~N~~~~~~~~~~~~~~~ 364 (390)
T 3o6n_A 345 T-------LSHNDWDCNSLRALFRNVA 364 (390)
T ss_dssp E-------CCSSCEEHHHHHHHTTTCC
T ss_pred E-------cCCCCccchhHHHHHHHHH
Confidence 3 3556788888888776543
No 37
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=4.2e-34 Score=254.82 Aligned_cols=252 Identities=26% Similarity=0.343 Sum_probs=210.5
Q ss_pred CCCCeEeCcCCcccc--cCCcccccCCCCCcEEEccC-CCcccccccccccccCcccccEEeccCCCCCCCCCchhhcCC
Q 042011 27 TSIEELMLSNNHFQI--PISLEPLFNHSRLKIFYADN-NELNAEITQSHSLIAPNFQLNSLSLSSDYGDGFIFPKFLYHQ 103 (361)
Q Consensus 27 ~~L~~L~Ls~n~l~~--~~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l 103 (361)
.++++|+|++|++++ .+| ..+.++++|++|++++ |.+.+..+.. +..+.+|++|++ ++|.+++..|..+..+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~-~~l~~l~~L~~L~L~~~n~l~~~~p~~---l~~l~~L~~L~L-s~n~l~~~~p~~~~~l 124 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIP-SSLANLPYLNFLYIGGINNLVGPIPPA---IAKLTQLHYLYI-THTNVSGAIPDFLSQI 124 (313)
T ss_dssp CCEEEEEEECCCCSSCEECC-GGGGGCTTCSEEEEEEETTEESCCCGG---GGGCTTCSEEEE-EEECCEEECCGGGGGC
T ss_pred ceEEEEECCCCCccCCcccC-hhHhCCCCCCeeeCCCCCcccccCChh---HhcCCCCCEEEC-cCCeeCCcCCHHHhCC
Confidence 467777777777765 566 4677777777777774 6666555544 455567777777 7777776778888899
Q ss_pred CCccEEEecCCcccCCcChHHHhcCCCCcEEEecCCcccCCCCCCcCCCC-CcCEEEccCCcCCccCChhhhccCCCccE
Q 042011 104 HDLALVDLSHIKMNGEFPTWLLENNTKLETLFLVNDSLTGPFRLPIHSHR-WLEFLDISNNNFRCHIPVEIGDILPSLKF 182 (361)
Q Consensus 104 ~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 182 (361)
++|++|++++|.+++.+|.. +..+++|++|++++|++++..|..+..++ +|++|++++|++++.+|..+.. ++ |++
T Consensus 125 ~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~-l~-L~~ 201 (313)
T 1ogq_A 125 KTLVTLDFSYNALSGTLPPS-ISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN-LN-LAF 201 (313)
T ss_dssp TTCCEEECCSSEEESCCCGG-GGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGG-CC-CSE
T ss_pred CCCCEEeCCCCccCCcCChH-HhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhC-Cc-ccE
Confidence 99999999999998778877 78899999999999999888888898887 8999999999998778877766 55 999
Q ss_pred EEecCCccccccCccccCCCCCCEEeccCCcCccccchhhhhCCCCCcEEEeecCCCCCcccccccCCCCCCEEeccCCc
Q 042011 183 FNISMNALDGSIPSSFGNMNFLRVLDLSNNQLTGEIPEHLAVGCVNLESLALSNNSLEGHMFSRNFNLTNLEWLQLGGNR 262 (361)
Q Consensus 183 L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~ 262 (361)
|++++|.+++..|..+..+++|++|++++|.+++..|. + ..+++|++|++++|++++..|..+..+++|+.|++++|+
T Consensus 202 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~-~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 279 (313)
T 1ogq_A 202 VDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-V-GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN 279 (313)
T ss_dssp EECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-C-CCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSE
T ss_pred EECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-c-cccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCc
Confidence 99999999988899999999999999999999855554 3 378999999999999998889999999999999999999
Q ss_pred CCccchhhhhcCCCCCEEECcCCc-ccc
Q 042011 263 FVGEIPQSLSKCSSLEGLYLNNNS-LSG 289 (361)
Q Consensus 263 l~~~~~~~~~~l~~L~~L~l~~N~-l~~ 289 (361)
+++.+|.. ..+++|+.+++++|+ +.+
T Consensus 280 l~~~ip~~-~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 280 LCGEIPQG-GNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp EEEECCCS-TTGGGSCGGGTCSSSEEES
T ss_pred ccccCCCC-ccccccChHHhcCCCCccC
Confidence 99888876 788999999999998 554
No 38
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=3.9e-32 Score=244.15 Aligned_cols=269 Identities=18% Similarity=0.193 Sum_probs=225.9
Q ss_pred CCCCeEeCCCccccCcCChhhhhccCCCCeEeCcCCcccccCCcccccCCCCCcEEEccCCCcccccccccccccCcccc
Q 042011 2 TSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLIAPNFQL 81 (361)
Q Consensus 2 ~~L~~L~L~~n~i~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L 81 (361)
++++.|++++|+++ .++...|.++++|++|++++|++++..| ..|.++++|++|++++|.++...... . .+|
T Consensus 52 ~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~l~~~~----~--~~L 123 (330)
T 1xku_A 52 PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISP-GAFAPLVKLERLYLSKNQLKELPEKM----P--KTL 123 (330)
T ss_dssp TTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCCCBCT-TTTTTCTTCCEEECCSSCCSBCCSSC----C--TTC
T ss_pred CCCeEEECCCCcCC-EeChhhhccCCCCCEEECCCCcCCeeCH-HHhcCCCCCCEEECCCCcCCccChhh----c--ccc
Confidence 57899999999998 6665589999999999999999985445 68999999999999999998543322 1 599
Q ss_pred cEEeccCCCCCCCCCchhhcCCCCccEEEecCCcccC--CcChHHHhcCCCCcEEEecCCcccCCCCCCcCCCCCcCEEE
Q 042011 82 NSLSLSSDYGDGFIFPKFLYHQHDLALVDLSHIKMNG--EFPTWLLENNTKLETLFLVNDSLTGPFRLPIHSHRWLEFLD 159 (361)
Q Consensus 82 ~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~--~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 159 (361)
++|++ ++|.+....+..+..+++|++|++++|.+.. ..+.. +.++++|++|++++|.+.. +|..+. ++|++|+
T Consensus 124 ~~L~l-~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~ 198 (330)
T 1xku_A 124 QELRV-HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGA-FQGMKKLSYIRIADTNITT-IPQGLP--PSLTELH 198 (330)
T ss_dssp CEEEC-CSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTG-GGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEE
T ss_pred cEEEC-CCCcccccCHhHhcCCccccEEECCCCcCCccCcChhh-ccCCCCcCEEECCCCcccc-CCcccc--ccCCEEE
Confidence 99999 9999998888889999999999999999863 33444 8899999999999999985 444443 7899999
Q ss_pred ccCCcCCccCChhhhccCCCccEEEecCCccccccCccccCCCCCCEEeccCCcCccccchhhhhCCCCCcEEEeecCCC
Q 042011 160 ISNNNFRCHIPVEIGDILPSLKFFNISMNALDGSIPSSFGNMNFLRVLDLSNNQLTGEIPEHLAVGCVNLESLALSNNSL 239 (361)
Q Consensus 160 l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l 239 (361)
+++|++++..+..+ ..+++|++|++++|.+++..+..+..+++|++|++++|.++ .+|..+. .+++|++|++++|++
T Consensus 199 l~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~-~l~~L~~L~l~~N~i 275 (330)
T 1xku_A 199 LDGNKITKVDAASL-KGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLA-DHKYIQVVYLHNNNI 275 (330)
T ss_dssp CTTSCCCEECTGGG-TTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTT-TCSSCCEEECCSSCC
T ss_pred CCCCcCCccCHHHh-cCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhc-cCCCcCEEECCCCcC
Confidence 99999984444444 45899999999999999777778999999999999999999 8988776 799999999999999
Q ss_pred CCcccccccC------CCCCCEEeccCCcCCc--cchhhhhcCCCCCEEECcCCc
Q 042011 240 EGHMFSRNFN------LTNLEWLQLGGNRFVG--EIPQSLSKCSSLEGLYLNNNS 286 (361)
Q Consensus 240 ~~~~~~~~~~------~~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~l~~N~ 286 (361)
++..+..|.. .+.++.+++++|++.. ..|..|..+++++.+++++|+
T Consensus 276 ~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 276 SAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred CccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 9877766653 3789999999999874 467889999999999999985
No 39
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=4e-32 Score=255.39 Aligned_cols=281 Identities=25% Similarity=0.279 Sum_probs=191.6
Q ss_pred CCCCeEeCCCccccCcCChhhhhccCCCCeEeCcCCcccccCCcccccCCCCCcEEEccCCCcccccccccccccCcccc
Q 042011 2 TSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLIAPNFQL 81 (361)
Q Consensus 2 ~~L~~L~L~~n~i~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L 81 (361)
++++.|+++++.++ .+|. +..+++|++|++++|.++ .++ .+.++++|++|++++|.+.+..+ +..+.+|
T Consensus 46 ~~l~~L~l~~~~i~-~l~~--~~~l~~L~~L~Ls~n~l~-~~~--~~~~l~~L~~L~l~~n~l~~~~~-----~~~l~~L 114 (466)
T 1o6v_A 46 DQVTTLQADRLGIK-SIDG--VEYLNNLTQINFSNNQLT-DIT--PLKNLTKLVDILMNNNQIADITP-----LANLTNL 114 (466)
T ss_dssp HTCCEEECCSSCCC-CCTT--GGGCTTCCEEECCSSCCC-CCG--GGTTCTTCCEEECCSSCCCCCGG-----GTTCTTC
T ss_pred ccccEEecCCCCCc-cCcc--hhhhcCCCEEECCCCccC-Cch--hhhccccCCEEECCCCccccChh-----hcCCCCC
Confidence 57899999999998 7886 889999999999999998 555 28999999999999999986543 5677799
Q ss_pred cEEeccCCCCCCCCCchhhcCCCCccEEEecCCcccCCcChH-------------------HHhcCCCCcEEEecCCccc
Q 042011 82 NSLSLSSDYGDGFIFPKFLYHQHDLALVDLSHIKMNGEFPTW-------------------LLENNTKLETLFLVNDSLT 142 (361)
Q Consensus 82 ~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~-------------------~~~~~~~L~~L~l~~n~l~ 142 (361)
++|++ ++|.+.+..+ +..+++|++|++++|.+.+ ++.. .+.++++|++|++++|.+.
T Consensus 115 ~~L~L-~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~ 190 (466)
T 1o6v_A 115 TGLTL-FNNQITDIDP--LKNLTNLNRLELSSNTISD-ISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVS 190 (466)
T ss_dssp CEEEC-CSSCCCCCGG--GTTCTTCSEEEEEEEEECC-CGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCC
T ss_pred CEEEC-CCCCCCCChH--HcCCCCCCEEECCCCccCC-ChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCC
Confidence 99999 8899887543 8899999999999999873 4320 1345566666666666665
Q ss_pred CCCCCCcCCCCCcCEEEccCCcCCccCChhhhccCCCccEEEecCCccccccCccccCCCCCCEEeccCCcCccccchhh
Q 042011 143 GPFRLPIHSHRWLEFLDISNNNFRCHIPVEIGDILPSLKFFNISMNALDGSIPSSFGNMNFLRVLDLSNNQLTGEIPEHL 222 (361)
Q Consensus 143 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~ 222 (361)
+. ..+..+++|++|++++|.+++ ++. + ..+++|++|++++|.+++ + ..+..+++|++|++++|.+. .++.
T Consensus 191 ~~--~~l~~l~~L~~L~l~~n~l~~-~~~-~-~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~-~~~~-- 260 (466)
T 1o6v_A 191 DI--SVLAKLTNLESLIATNNQISD-ITP-L-GILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQIS-NLAP-- 260 (466)
T ss_dssp CC--GGGGGCTTCSEEECCSSCCCC-CGG-G-GGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCC-CCGG--
T ss_pred CC--hhhccCCCCCEEEecCCcccc-ccc-c-cccCCCCEEECCCCCccc-c-hhhhcCCCCCEEECCCCccc-cchh--
Confidence 42 235666777777777777763 332 2 236777777777777763 2 34667777777777777776 3333
Q ss_pred hhCCCCCcEEEeecCCCCCcccccccCCCCCCEEeccCCcCCccchhhhhcCCCCCEEECcCCcccccCCCCCCCcCcce
Q 042011 223 AVGCVNLESLALSNNSLEGHMFSRNFNLTNLEWLQLGGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGNVNVPSSPANTLF 302 (361)
Q Consensus 223 ~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~L~ 302 (361)
+..+++|++|++++|.+++..+ +..+++|+.|++++|++++..+ +..+++|+.|++++|++++..| +..+++|+
T Consensus 261 ~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~ 334 (466)
T 1o6v_A 261 LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQ 334 (466)
T ss_dssp GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCC
T ss_pred hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCC
Confidence 2356667777777776665332 5556666666666666654322 4555555555555555554433 33444444
Q ss_pred eeccccccccC
Q 042011 303 NLSQNSRRFTS 313 (361)
Q Consensus 303 ~l~l~~N~~~~ 313 (361)
+|++++|++++
T Consensus 335 ~L~l~~n~l~~ 345 (466)
T 1o6v_A 335 RLFFYNNKVSD 345 (466)
T ss_dssp EEECCSSCCCC
T ss_pred EeECCCCccCC
Confidence 44444444443
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=1.3e-32 Score=266.25 Aligned_cols=303 Identities=20% Similarity=0.251 Sum_probs=240.8
Q ss_pred ccCCCCeEeCcCCcccccCCcccccCCCCCcEEEccCCCcccccccccccccCcccccEEeccCCCCCCCCCchhhcCCC
Q 042011 25 HLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLIAPNFQLNSLSLSSDYGDGFIFPKFLYHQH 104 (361)
Q Consensus 25 ~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~ 104 (361)
.+++++.+++++|.++ .+|...|..+++|++|++++|.+++..+.. +..+.+|++|++ ++|.+.+..+..|..++
T Consensus 49 ~l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~---~~~l~~L~~L~L-~~n~l~~~~~~~~~~l~ 123 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYA---FAYAHTIQKLYM-GFNAIRYLPPHVFQNVP 123 (597)
T ss_dssp GGCCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTT---TTTCTTCCEEEC-CSSCCCCCCTTTTTTCT
T ss_pred cCCCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHH---hcCCCCCCEEEC-CCCcCCCCCHHHHcCCC
Confidence 4688999999999998 677677899999999999999998776655 567779999999 99999998888999999
Q ss_pred CccEEEecCCcccCCcChHHHhcCCCCcEEEecCCcccCCCCCCcCCCCCcCEEEccCCcCCccCChhhhccCCCccEEE
Q 042011 105 DLALVDLSHIKMNGEFPTWLLENNTKLETLFLVNDSLTGPFRLPIHSHRWLEFLDISNNNFRCHIPVEIGDILPSLKFFN 184 (361)
Q Consensus 105 ~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 184 (361)
+|++|++++|.++ .+|...|+++++|++|++++|.+.+..+..+..+++|++|++++|.++ .++.. .+++|+.|+
T Consensus 124 ~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~---~l~~L~~L~ 198 (597)
T 3oja_B 124 LLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDLS---LIPSLFHAN 198 (597)
T ss_dssp TCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCS-BCCGG---GCTTCSEEE
T ss_pred CCCEEEeeCCCCC-CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCC-CcChh---hhhhhhhhh
Confidence 9999999999998 677766899999999999999999888889999999999999999998 45432 255666666
Q ss_pred ecCCcccc------------------ccCccccCCCCCCEEeccCCcCccccchhhhhCCCCCcEEEeecCCCCCccccc
Q 042011 185 ISMNALDG------------------SIPSSFGNMNFLRVLDLSNNQLTGEIPEHLAVGCVNLESLALSNNSLEGHMFSR 246 (361)
Q Consensus 185 L~~n~l~~------------------~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 246 (361)
+++|.+++ .++.. ..++|+.|++++|.+++ . ..+. .+++|+.|++++|.+.+..+..
T Consensus 199 l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~--~~~~L~~L~L~~n~l~~-~-~~l~-~l~~L~~L~Ls~N~l~~~~~~~ 273 (597)
T 3oja_B 199 VSYNLLSTLAIPIAVEELDASHNSINVVRGP--VNVELTILKLQHNNLTD-T-AWLL-NYPGLVEVDLSYNELEKIMYHP 273 (597)
T ss_dssp CCSSCCSEEECCTTCSEEECCSSCCCEEECS--CCSCCCEEECCSSCCCC-C-GGGG-GCTTCSEEECCSSCCCEEESGG
T ss_pred cccCccccccCCchhheeeccCCcccccccc--cCCCCCEEECCCCCCCC-C-hhhc-cCCCCCEEECCCCccCCCCHHH
Confidence 66665542 11111 12567888888888773 2 3333 7888999999999988888888
Q ss_pred ccCCCCCCEEeccCCcCCccchhhhhcCCCCCEEECcCCcccccCCCCCCCcCcceeeccccccccCCcccccccccccc
Q 042011 247 NFNLTNLEWLQLGGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGNVNVPSSPANTLFNLSQNSRRFTSSISHSHLLNLHGI 326 (361)
Q Consensus 247 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~~~~~~~~~~~~ 326 (361)
+..+++|+.|++++|.+++ +|..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|++++. +...+..+..+
T Consensus 274 ~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~L~~L 350 (597)
T 3oja_B 274 FVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-KLSTHHTLKNL 350 (597)
T ss_dssp GTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-CCCTTCCCSEE
T ss_pred hcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-ChhhcCCCCEE
Confidence 8888999999999998885 5666677889999999999888 4666677788899999999988764 44445555444
Q ss_pred hhhhHHHhhccchHHHHHHHHHhhcc
Q 042011 327 CKEYAKEFARNMPRICEEYAAYLNST 352 (361)
Q Consensus 327 ~~~~~~~~~~~~~~~c~~~~~~~~~~ 352 (361)
. ..++|+.|.+..+|+...
T Consensus 351 ~-------l~~N~~~~~~~~~~~~~~ 369 (597)
T 3oja_B 351 T-------LSHNDWDCNSLRALFRNV 369 (597)
T ss_dssp E-------CCSSCEEHHHHHHHTTTC
T ss_pred E-------eeCCCCCChhHHHHHHHH
Confidence 3 355677888888776543
No 41
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=100.00 E-value=2.1e-32 Score=248.14 Aligned_cols=289 Identities=17% Similarity=0.116 Sum_probs=235.4
Q ss_pred hccCCCCeEeCcCCcccccCCcccccCCCCCcEEEccCCCcccccccccccccCcccccEEeccCCCCCCCCCchhhcCC
Q 042011 24 VHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLIAPNFQLNSLSLSSDYGDGFIFPKFLYHQ 103 (361)
Q Consensus 24 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l 103 (361)
..|+.....++++++++ .+|. .+ .++|++|++++|.+++..+.. +..+.+|++|++ ++|.+++..+..|..+
T Consensus 28 ~~C~~~~~c~~~~~~l~-~iP~-~~--~~~L~~L~l~~n~i~~~~~~~---~~~l~~L~~L~L-~~n~l~~~~~~~~~~l 99 (353)
T 2z80_A 28 LSCDRNGICKGSSGSLN-SIPS-GL--TEAVKSLDLSNNRITYISNSD---LQRCVNLQALVL-TSNGINTIEEDSFSSL 99 (353)
T ss_dssp CEECTTSEEECCSTTCS-SCCT-TC--CTTCCEEECTTSCCCEECTTT---TTTCTTCCEEEC-TTSCCCEECTTTTTTC
T ss_pred CCCCCCeEeeCCCCCcc-cccc-cc--cccCcEEECCCCcCcccCHHH---hccCCCCCEEEC-CCCccCccCHhhcCCC
Confidence 34666677888888887 6773 33 247888888888887654433 456668888888 8888887777889999
Q ss_pred CCccEEEecCCcccCCcChHHHhcCCCCcEEEecCCcccCCCC-CCcCCCCCcCEEEccCCc-CCccCChhhhccCCCcc
Q 042011 104 HDLALVDLSHIKMNGEFPTWLLENNTKLETLFLVNDSLTGPFR-LPIHSHRWLEFLDISNNN-FRCHIPVEIGDILPSLK 181 (361)
Q Consensus 104 ~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~ 181 (361)
++|++|++++|.++ .++...++++++|++|++++|++.+..+ ..+..+++|++|++++|. +. .++...+..+++|+
T Consensus 100 ~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~~l~~L~ 177 (353)
T 2z80_A 100 GSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFT-KIQRKDFAGLTFLE 177 (353)
T ss_dssp TTCCEEECCSSCCS-SCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCC-EECTTTTTTCCEEE
T ss_pred CCCCEEECCCCcCC-cCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCcccc-ccCHHHccCCCCCC
Confidence 99999999999998 6777668899999999999999986544 478899999999999994 66 66555555589999
Q ss_pred EEEecCCccccccCccccCCCCCCEEeccCCcCccccchhhhhCCCCCcEEEeecCCCCCccccccc---CCCCCCEEec
Q 042011 182 FFNISMNALDGSIPSSFGNMNFLRVLDLSNNQLTGEIPEHLAVGCVNLESLALSNNSLEGHMFSRNF---NLTNLEWLQL 258 (361)
Q Consensus 182 ~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~---~~~~L~~L~L 258 (361)
+|++++|.+++..|..+..+++|++|++++|.+. .+|...+..+++|++|++++|.+++..+..+. ....++.+++
T Consensus 178 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L 256 (353)
T 2z80_A 178 ELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTF 256 (353)
T ss_dssp EEEEEETTCCEECTTTTTTCSEEEEEEEECSCST-THHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEE
T ss_pred EEECCCCCcCccCHHHHhccccCCeecCCCCccc-cchhhhhhhcccccEEECCCCccccccccccccccccchhhcccc
Confidence 9999999999888999999999999999999997 88887776799999999999999886544433 4677899999
Q ss_pred cCCcCCc----cchhhhhcCCCCCEEECcCCcccccCCCCCCCcCcceeeccccccccCCcc-ccccccc
Q 042011 259 GGNRFVG----EIPQSLSKCSSLEGLYLNNNSLSGNVNVPSSPANTLFNLSQNSRRFTSSIS-HSHLLNL 323 (361)
Q Consensus 259 ~~n~l~~----~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~~-~~~~~~~ 323 (361)
+++.+.+ .+|+.+..+++|+.|++++|+++...+..|..+++|++|++++|+++|.+| ..++..|
T Consensus 257 ~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~~l~~l~~~ 326 (353)
T 2z80_A 257 RNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRW 326 (353)
T ss_dssp ESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHHHHHHHHH
T ss_pred ccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCCCcHHHHHH
Confidence 9998886 367889999999999999999996544556899999999999999999887 3344443
No 42
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=6.7e-32 Score=252.47 Aligned_cols=276 Identities=21% Similarity=0.217 Sum_probs=200.2
Q ss_pred CCCCCeEeCCCccccCcCChhhhhccCCCCeEeCcCCcccccCCcccccCCCCCcEEEccCCCcccccccccccccCccc
Q 042011 1 MTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLIAPNFQ 80 (361)
Q Consensus 1 l~~L~~L~L~~n~i~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~ 80 (361)
+++|++|++++|.++ .+|. +..+++|++|++++|++++ ++ +..+++|++|++++|.+++.. +..+.+
T Consensus 41 l~~L~~L~Ls~n~l~-~~~~--l~~l~~L~~L~Ls~n~l~~-~~---~~~l~~L~~L~Ls~N~l~~~~------~~~l~~ 107 (457)
T 3bz5_A 41 LATLTSLDCHNSSIT-DMTG--IEKLTGLTKLICTSNNITT-LD---LSQNTNLTYLACDSNKLTNLD------VTPLTK 107 (457)
T ss_dssp HTTCCEEECCSSCCC-CCTT--GGGCTTCSEEECCSSCCSC-CC---CTTCTTCSEEECCSSCCSCCC------CTTCTT
T ss_pred cCCCCEEEccCCCcc-cChh--hcccCCCCEEEccCCcCCe-Ec---cccCCCCCEEECcCCCCceee------cCCCCc
Confidence 468999999999998 5674 8999999999999999984 44 788999999999999988641 456779
Q ss_pred ccEEeccCCCCCCCCCchhhcCCCCccEEEecCCcccCCcChHHHhcCCCCcEEEecCCcccCCCCCCcCCCCCcCEEEc
Q 042011 81 LNSLSLSSDYGDGFIFPKFLYHQHDLALVDLSHIKMNGEFPTWLLENNTKLETLFLVNDSLTGPFRLPIHSHRWLEFLDI 160 (361)
Q Consensus 81 L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 160 (361)
|++|++ ++|.+++. + +..+++|++|++++|.+++ ++ ++.+++|++|++++|...+.. .+..+++|++|++
T Consensus 108 L~~L~L-~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~-l~---l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l 177 (457)
T 3bz5_A 108 LTYLNC-DTNKLTKL-D--VSQNPLLTYLNCARNTLTE-ID---VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDC 177 (457)
T ss_dssp CCEEEC-CSSCCSCC-C--CTTCTTCCEEECTTSCCSC-CC---CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEEC
T ss_pred CCEEEC-CCCcCCee-c--CCCCCcCCEEECCCCccce-ec---cccCCcCCEEECCCCCccccc--ccccCCcCCEEEC
Confidence 999999 88888764 3 7888999999999999884 44 567888888888888544333 4667778888888
Q ss_pred cCCcCCccCChhhhccCCCccEEEecCCccccccCccccCCCCCCEEeccCCcCccccchhhhhCCCCCcEEEeecCCCC
Q 042011 161 SNNNFRCHIPVEIGDILPSLKFFNISMNALDGSIPSSFGNMNFLRVLDLSNNQLTGEIPEHLAVGCVNLESLALSNNSLE 240 (361)
Q Consensus 161 ~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~ 240 (361)
++|+++ .+| +. .+++|+.|++++|.+++. .+..+++|++|++++|.++ .+| + ..+++|+.|++++|+++
T Consensus 178 s~n~l~-~l~--l~-~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~-~ip--~-~~l~~L~~L~l~~N~l~ 246 (457)
T 3bz5_A 178 SFNKIT-ELD--VS-QNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLT-EID--V-TPLTQLTYFDCSVNPLT 246 (457)
T ss_dssp CSSCCC-CCC--CT-TCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCS-CCC--C-TTCTTCSEEECCSSCCS
T ss_pred CCCccc-eec--cc-cCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCccc-ccC--c-cccCCCCEEEeeCCcCC
Confidence 888887 455 33 367777777777777743 3667777777777777777 455 2 36777777777777776
Q ss_pred Cccccccc-----------------------------CCCCCCEEeccCCcCCccchh--------hhhcCCCCCEEECc
Q 042011 241 GHMFSRNF-----------------------------NLTNLEWLQLGGNRFVGEIPQ--------SLSKCSSLEGLYLN 283 (361)
Q Consensus 241 ~~~~~~~~-----------------------------~~~~L~~L~L~~n~l~~~~~~--------~~~~l~~L~~L~l~ 283 (361)
+..+..+. .+++|+.|++++|...+.+|. .+..+++|+.|+++
T Consensus 247 ~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~ 326 (457)
T 3bz5_A 247 ELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLN 326 (457)
T ss_dssp CCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECT
T ss_pred CcCHHHCCCCCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECC
Confidence 64433322 334555555555554333332 24455677777777
Q ss_pred CCcccccCCCCCCCcCcceeeccccccccC
Q 042011 284 NNSLSGNVNVPSSPANTLFNLSQNSRRFTS 313 (361)
Q Consensus 284 ~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~ 313 (361)
+|++++. .+..+++|+.|++++|++++
T Consensus 327 ~N~l~~l---~l~~l~~L~~L~l~~N~l~~ 353 (457)
T 3bz5_A 327 NTELTEL---DVSHNTKLKSLSCVNAHIQD 353 (457)
T ss_dssp TCCCSCC---CCTTCTTCSEEECCSSCCCB
T ss_pred CCccccc---ccccCCcCcEEECCCCCCCC
Confidence 7777763 26777788888888888776
No 43
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=2.2e-32 Score=266.58 Aligned_cols=328 Identities=17% Similarity=0.128 Sum_probs=236.3
Q ss_pred eEeCCCccccCcCChhhhhccCCCCeEeCcCCcccccCCcccccCCCCCcEEEccCCCcccccccccccccCcccccEEe
Q 042011 6 ILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLIAPNFQLNSLS 85 (361)
Q Consensus 6 ~L~L~~n~i~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~ 85 (361)
+.+-++-+++ .||. .+ -+++++|||++|+|+ .++..+|.++++|++|+|++|.+++..+.. |..+.+|++|+
T Consensus 35 ~~~c~~~~l~-~vP~-~l--p~~~~~LdLs~N~i~-~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~---f~~L~~L~~L~ 106 (635)
T 4g8a_A 35 TYQCMELNFY-KIPD-NL--PFSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGA---YQSLSHLSTLI 106 (635)
T ss_dssp EEECTTSCCS-SCCS-SS--CTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTT---TTTCTTCCEEE
T ss_pred EEECCCCCcC-ccCC-CC--CcCCCEEEeeCCCCC-CCCHHHHhCCCCCCEEECCCCcCCCcChhH---hcCCCCCCEEE
Confidence 3455566777 7887 22 248999999999998 677678999999999999999998776655 66778999999
Q ss_pred ccCCCCCCCCCchhhcCCCCccEEEecCCcccCCcChHHHhcCCCCcEEEecCCcccCC-CCCCcCCCCCcCEEEccCCc
Q 042011 86 LSSDYGDGFIFPKFLYHQHDLALVDLSHIKMNGEFPTWLLENNTKLETLFLVNDSLTGP-FRLPIHSHRWLEFLDISNNN 164 (361)
Q Consensus 86 l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~ 164 (361)
| ++|.++...+..|.++++|++|++++|.++ .++...++++++|++|++++|.+... .|..+..+++|++|++++|+
T Consensus 107 L-s~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~-~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~ 184 (635)
T 4g8a_A 107 L-TGNPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 184 (635)
T ss_dssp C-TTCCCCEECGGGGTTCTTCCEEECTTSCCC-CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred c-cCCcCCCCCHHHhcCCCCCCEEECCCCcCC-CCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcc
Confidence 9 999999888888999999999999999998 56655589999999999999999753 57778889999999999998
Q ss_pred CCccCChhhhc---------------------------------------------------------------------
Q 042011 165 FRCHIPVEIGD--------------------------------------------------------------------- 175 (361)
Q Consensus 165 l~~~~~~~~~~--------------------------------------------------------------------- 175 (361)
+++..+..+..
T Consensus 185 l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~ 264 (635)
T 4g8a_A 185 IQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE 264 (635)
T ss_dssp CCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTS
T ss_pred ccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccc
Confidence 76322211100
Q ss_pred -------------------------------------------------------------cCCCccEEEecCCcccccc
Q 042011 176 -------------------------------------------------------------ILPSLKFFNISMNALDGSI 194 (361)
Q Consensus 176 -------------------------------------------------------------~l~~L~~L~L~~n~l~~~~ 194 (361)
....++.|++.+|.+.+..
T Consensus 265 ~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 344 (635)
T 4g8a_A 265 GNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFP 344 (635)
T ss_dssp CCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCC
T ss_pred cccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcC
Confidence 0011223333332221100
Q ss_pred Cc-------------------cccCCCCCCEEeccCCcCcc---------------------------------------
Q 042011 195 PS-------------------SFGNMNFLRVLDLSNNQLTG--------------------------------------- 216 (361)
Q Consensus 195 ~~-------------------~l~~~~~L~~L~l~~n~l~~--------------------------------------- 216 (361)
+. ....+++|+.+++++|.+..
T Consensus 345 ~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ 424 (635)
T 4g8a_A 345 TLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEH 424 (635)
T ss_dssp CCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCE
T ss_pred cccchhhhhcccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccc
Confidence 00 01123344444444443320
Q ss_pred ----------------------------------ccchhhhhCCCCCcEEEeecCCC-CCcccccccCCCCCCEEeccCC
Q 042011 217 ----------------------------------EIPEHLAVGCVNLESLALSNNSL-EGHMFSRNFNLTNLEWLQLGGN 261 (361)
Q Consensus 217 ----------------------------------~~~~~~~~~~~~L~~L~L~~n~l-~~~~~~~~~~~~~L~~L~L~~n 261 (361)
..+...+..++.++.|++++|.+ ....+..+..+++|++|++++|
T Consensus 425 l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N 504 (635)
T 4g8a_A 425 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 504 (635)
T ss_dssp EECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS
T ss_pred hhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCC
Confidence 11122223556677777777764 3456778889999999999999
Q ss_pred cCCccchhhhhcCCCCCEEECcCCcccccCCCCCCCcCcceeeccccccccCCccccccccc-ccchhhhHHHhhccchH
Q 042011 262 RFVGEIPQSLSKCSSLEGLYLNNNSLSGNVNVPSSPANTLFNLSQNSRRFTSSISHSHLLNL-HGICKEYAKEFARNMPR 340 (361)
Q Consensus 262 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 340 (361)
++++..|..|.++++|++|++++|+|++..+..|..+++|++|++++|++++..|.. +..+ ..+ ..-...++|+
T Consensus 505 ~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-l~~l~~~L----~~L~L~~Np~ 579 (635)
T 4g8a_A 505 QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE-LQHFPSSL----AFLNLTQNDF 579 (635)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSC-TTCCCTTC----CEEECTTCCB
T ss_pred ccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHH-HHhhhCcC----CEEEeeCCCC
Confidence 999888999999999999999999999988888999999999999999999877643 2222 111 1123466888
Q ss_pred HHHHHHHH
Q 042011 341 ICEEYAAY 348 (361)
Q Consensus 341 ~c~~~~~~ 348 (361)
.|+|...|
T Consensus 580 ~C~C~~~~ 587 (635)
T 4g8a_A 580 ACTCEHQS 587 (635)
T ss_dssp CCSGGGHH
T ss_pred cccCCcHH
Confidence 88885444
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=5.3e-32 Score=243.45 Aligned_cols=288 Identities=17% Similarity=0.171 Sum_probs=243.6
Q ss_pred CCCeEeCCCccccCcCChhhhhccCCCCeEeCcCCcccccCCcccccCCCCCcEEEccCCCcccccccccccccCccccc
Q 042011 3 SLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLIAPNFQLN 82 (361)
Q Consensus 3 ~L~~L~L~~n~i~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~ 82 (361)
+++.++++++.++ .+|. .+ .++|++|++++|+++ .++...|.++++|++|++++|.+++..+.. +..+.+|+
T Consensus 34 ~l~~l~~~~~~l~-~ip~-~~--~~~l~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~---~~~l~~L~ 105 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPK-EI--SPDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISKIHEKA---FSPLRKLQ 105 (332)
T ss_dssp ETTEEECCSSCCS-SCCS-CC--CTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECGGG---STTCTTCC
T ss_pred cCCEEECCCCCcc-ccCC-CC--CCCCeEEECCCCcCC-ccCHhHhhCCCCCcEEECCCCccCccCHhH---hhCcCCCC
Confidence 5899999999998 8887 34 479999999999998 555468999999999999999998776655 56778999
Q ss_pred EEeccCCCCCCCCCchhhcCCCCccEEEecCCcccCCcChHHHhcCCCCcEEEecCCccc--CCCCCCcCCCCCcCEEEc
Q 042011 83 SLSLSSDYGDGFIFPKFLYHQHDLALVDLSHIKMNGEFPTWLLENNTKLETLFLVNDSLT--GPFRLPIHSHRWLEFLDI 160 (361)
Q Consensus 83 ~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l 160 (361)
+|++ ++|.+... |..+. ++|++|++++|.++ .++...+.++++|++|++++|.+. +..+..+..+ +|++|++
T Consensus 106 ~L~L-~~n~l~~l-~~~~~--~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l 179 (332)
T 2ft3_A 106 KLYI-SKNHLVEI-PPNLP--SSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRI 179 (332)
T ss_dssp EEEC-CSSCCCSC-CSSCC--TTCCEEECCSSCCC-CCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBC
T ss_pred EEEC-CCCcCCcc-Ccccc--ccCCEEECCCCccC-ccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEEC
Confidence 9999 88988854 44333 89999999999998 566655899999999999999996 3667778877 8999999
Q ss_pred cCCcCCccCChhhhccCCCccEEEecCCccccccCccccCCCCCCEEeccCCcCccccchhhhhCCCCCcEEEeecCCCC
Q 042011 161 SNNNFRCHIPVEIGDILPSLKFFNISMNALDGSIPSSFGNMNFLRVLDLSNNQLTGEIPEHLAVGCVNLESLALSNNSLE 240 (361)
Q Consensus 161 ~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~ 240 (361)
++|+++ .+|..++ ++|++|++++|.+++..+..+..+++|++|++++|.+. .++...+..+++|++|++++|+++
T Consensus 180 ~~n~l~-~l~~~~~---~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~ 254 (332)
T 2ft3_A 180 SEAKLT-GIPKDLP---ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIR-MIENGSLSFLPTLRELHLDNNKLS 254 (332)
T ss_dssp CSSBCS-SCCSSSC---SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCC-CCCTTGGGGCTTCCEEECCSSCCC
T ss_pred cCCCCC-ccCcccc---CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCC-cCChhHhhCCCCCCEEECCCCcCe
Confidence 999998 7887654 69999999999999777788999999999999999999 555544458999999999999998
Q ss_pred CcccccccCCCCCCEEeccCCcCCccchhhhhcC------CCCCEEECcCCccc--ccCCCCCCCcCcceeecccccc
Q 042011 241 GHMFSRNFNLTNLEWLQLGGNRFVGEIPQSLSKC------SSLEGLYLNNNSLS--GNVNVPSSPANTLFNLSQNSRR 310 (361)
Q Consensus 241 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l------~~L~~L~l~~N~l~--~~~~~~~~~~~~L~~l~l~~N~ 310 (361)
. .|..+..+++|+.|++++|++++..+..|... ++|+.+++++|.+. +..|.+|..+++|+.+++++|+
T Consensus 255 ~-lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 255 R-VPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp B-CCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred e-cChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 5 67778999999999999999997777777653 67999999999987 5677789999999999999885
No 45
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.98 E-value=1.5e-30 Score=243.40 Aligned_cols=291 Identities=21% Similarity=0.224 Sum_probs=173.2
Q ss_pred CCCCCeEeCCCccccCcCChhhhhccCCCCeEeCcCCcccccCCcccccCCCCCcEEEccCCCcccccccccccccCccc
Q 042011 1 MTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLIAPNFQ 80 (361)
Q Consensus 1 l~~L~~L~L~~n~i~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~ 80 (361)
+++|++|++++|+++ .+| +..+++|++|++++|++++ ++ +.++++|++|++++|.+++. + +..+.+
T Consensus 63 l~~L~~L~Ls~n~l~-~~~---~~~l~~L~~L~Ls~N~l~~-~~---~~~l~~L~~L~L~~N~l~~l-~-----~~~l~~ 128 (457)
T 3bz5_A 63 LTGLTKLICTSNNIT-TLD---LSQNTNLTYLACDSNKLTN-LD---VTPLTKLTYLNCDTNKLTKL-D-----VSQNPL 128 (457)
T ss_dssp CTTCSEEECCSSCCS-CCC---CTTCTTCSEEECCSSCCSC-CC---CTTCTTCCEEECCSSCCSCC-C-----CTTCTT
T ss_pred cCCCCEEEccCCcCC-eEc---cccCCCCCEEECcCCCCce-ee---cCCCCcCCEEECCCCcCCee-c-----CCCCCc
Confidence 467788888888877 454 6677788888888887773 33 66777777777777777653 1 345557
Q ss_pred ccEEeccCCCCCCCCCchhhcCCCCccEEEecCCcccCCcChHHHhcCCCCcEEEecCCcccCCCC--------------
Q 042011 81 LNSLSLSSDYGDGFIFPKFLYHQHDLALVDLSHIKMNGEFPTWLLENNTKLETLFLVNDSLTGPFR-------------- 146 (361)
Q Consensus 81 L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-------------- 146 (361)
|++|++ ++|.+++. .++.+++|++|++++|...+.++ +..+++|++|++++|++++. +
T Consensus 129 L~~L~l-~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~~l-~l~~l~~L~~L~l~~ 200 (457)
T 3bz5_A 129 LTYLNC-ARNTLTEI---DVSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKITEL-DVSQNKLLNRLNCDT 200 (457)
T ss_dssp CCEEEC-TTSCCSCC---CCTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSCCCCC-CCTTCTTCCEEECCS
T ss_pred CCEEEC-CCCcccee---ccccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCCcccee-ccccCCCCCEEECcC
Confidence 777777 66666553 14455555555555553322332 33445555555555554431 1
Q ss_pred -----CCcCCCCCcCEEEccCCcCCccCChhhhccCCCccEEEecCCccccccCccccCCC-------CCCEEeccCCcC
Q 042011 147 -----LPIHSHRWLEFLDISNNNFRCHIPVEIGDILPSLKFFNISMNALDGSIPSSFGNMN-------FLRVLDLSNNQL 214 (361)
Q Consensus 147 -----~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~-------~L~~L~l~~n~l 214 (361)
..+..+++|++|++++|+++ .+| +. .+++|+.|++++|.+++..+..+..+. +|+++++++|.+
T Consensus 201 N~l~~~~l~~l~~L~~L~Ls~N~l~-~ip--~~-~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~ 276 (457)
T 3bz5_A 201 NNITKLDLNQNIQLTFLDCSSNKLT-EID--VT-PLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQ 276 (457)
T ss_dssp SCCSCCCCTTCTTCSEEECCSSCCS-CCC--CT-TCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTT
T ss_pred CcCCeeccccCCCCCEEECcCCccc-ccC--cc-ccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCcc
Confidence 02444445555555555554 233 22 244555555555555433222222221 223333333333
Q ss_pred ccccchhhhhCCCCCcEEEeecCCCCCcccc--------cccCCCCCCEEeccCCcCCccchhhhhcCCCCCEEECcCCc
Q 042011 215 TGEIPEHLAVGCVNLESLALSNNSLEGHMFS--------RNFNLTNLEWLQLGGNRFVGEIPQSLSKCSSLEGLYLNNNS 286 (361)
Q Consensus 215 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~--------~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 286 (361)
.+.+|. ..+++|+.|++++|...+..+. .+..+++|+.|++++|++++. + +..+++|+.|++++|+
T Consensus 277 ~~~~~~---~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~ 350 (457)
T 3bz5_A 277 LIYFQA---EGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAH 350 (457)
T ss_dssp CCEEEC---TTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSC
T ss_pred CCcccc---cccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCccccc-c--cccCCcCcEEECCCCC
Confidence 333331 2457777888887765443332 356778999999999999974 3 8899999999999999
Q ss_pred ccccCCC-CC----------CCcCcceeeccccccccCCccccccccc
Q 042011 287 LSGNVNV-PS----------SPANTLFNLSQNSRRFTSSISHSHLLNL 323 (361)
Q Consensus 287 l~~~~~~-~~----------~~~~~L~~l~l~~N~~~~~~~~~~~~~~ 323 (361)
+++...- .+ ..+..+..++++.|+++|.+|...+..+
T Consensus 351 l~~l~~L~~L~l~~n~l~g~~~~~~l~~l~l~~N~l~g~ip~~~~~~~ 398 (457)
T 3bz5_A 351 IQDFSSVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQF 398 (457)
T ss_dssp CCBCTTGGGSSGGGTSEEEEEEEEECCCBCCBTTBEEEECCTTCBCTT
T ss_pred CCCccccccccccCCcEEecceeeecCccccccCcEEEEcChhHhccc
Confidence 9873110 00 1124567889999999999987655543
No 46
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.97 E-value=9e-31 Score=244.40 Aligned_cols=238 Identities=21% Similarity=0.173 Sum_probs=202.6
Q ss_pred cccEEeccCCCCCCCCCchhhcCCCCccEEEecCCcccCCcChHHHhcCCCCcEEEecCCcccCCCCCCcCCCCCcCEEE
Q 042011 80 QLNSLSLSSDYGDGFIFPKFLYHQHDLALVDLSHIKMNGEFPTWLLENNTKLETLFLVNDSLTGPFRLPIHSHRWLEFLD 159 (361)
Q Consensus 80 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 159 (361)
+++.|++ ++|.+....+..|..+++|++|++++|.++ .++...|.++++|++|++++|+++...+..|..+++|++|+
T Consensus 65 ~l~~L~L-~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 142 (440)
T 3zyj_A 65 NTRLLNL-HENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELW 142 (440)
T ss_dssp TCSEEEC-CSCCCCEECTTTTSSCSSCCEEECCSSCCC-EECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEE
T ss_pred CCcEEEc-cCCcCCeeCHHHhhCCCCCCEEECCCCcCC-ccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceee
Confidence 5666666 666666666677888889999999999887 55544488899999999999998877777888999999999
Q ss_pred ccCCcCCccCChhhhccCCCccEEEecCC-ccccccCccccCCCCCCEEeccCCcCccccchhhhhCCCCCcEEEeecCC
Q 042011 160 ISNNNFRCHIPVEIGDILPSLKFFNISMN-ALDGSIPSSFGNMNFLRVLDLSNNQLTGEIPEHLAVGCVNLESLALSNNS 238 (361)
Q Consensus 160 l~~n~l~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~ 238 (361)
+++|+++ .++...+..+++|++|++++| .+....+..|..+++|++|++++|.++ .+|. + ..+++|++|++++|+
T Consensus 143 L~~N~i~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~-~-~~l~~L~~L~Ls~N~ 218 (440)
T 3zyj_A 143 LRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPN-L-TPLIKLDELDLSGNH 218 (440)
T ss_dssp CCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCCC-C-TTCSSCCEEECTTSC
T ss_pred CCCCccc-ccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-cccc-c-CCCcccCEEECCCCc
Confidence 9999998 677766666899999999984 445444557889999999999999998 7775 3 378999999999999
Q ss_pred CCCcccccccCCCCCCEEeccCCcCCccchhhhhcCCCCCEEECcCCcccccCCCCCCCcCcceeeccccccccCCcccc
Q 042011 239 LEGHMFSRNFNLTNLEWLQLGGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGNVNVPSSPANTLFNLSQNSRRFTSSISHS 318 (361)
Q Consensus 239 l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~~~~ 318 (361)
+++..+..+..+++|+.|++++|++++..+..|..+++|+.|++++|++++..+..|..+++|+.|++++|+|.|++...
T Consensus 219 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~l~ 298 (440)
T 3zyj_A 219 LSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDIL 298 (440)
T ss_dssp CCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSSTTH
T ss_pred cCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCCch
Confidence 99988899999999999999999999888899999999999999999999888888999999999999999999999877
Q ss_pred ccccc
Q 042011 319 HLLNL 323 (361)
Q Consensus 319 ~~~~~ 323 (361)
++..|
T Consensus 299 ~l~~~ 303 (440)
T 3zyj_A 299 WLSWW 303 (440)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76655
No 47
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.97 E-value=1.6e-30 Score=243.55 Aligned_cols=258 Identities=20% Similarity=0.154 Sum_probs=212.5
Q ss_pred CcEEEccCCCcccccccccccccCcccccEEeccCCCCCCCCCchhhcCCCCccEEEecCCcccCCcChHHHhcCCCCcE
Q 042011 54 LKIFYADNNELNAEITQSHSLIAPNFQLNSLSLSSDYGDGFIFPKFLYHQHDLALVDLSHIKMNGEFPTWLLENNTKLET 133 (361)
Q Consensus 54 L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~ 133 (361)
.+.++.++..++... ..+ . .++++|++ ++|.+....+..|..+++|+.|++++|.+++ ++...+.++++|++
T Consensus 56 ~~~v~c~~~~l~~iP-~~~---~--~~l~~L~L-~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~ 127 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVP-QGI---P--SNTRYLNL-MENNIQMIQADTFRHLHHLEVLQLGRNSIRQ-IEVGAFNGLASLNT 127 (452)
T ss_dssp SCEEECCSSCCSSCC-SCC---C--TTCSEEEC-CSSCCCEECTTTTTTCTTCCEEECCSSCCCE-ECTTTTTTCTTCCE
T ss_pred CcEEEECCCCcCccC-CCC---C--CCccEEEC-cCCcCceECHHHcCCCCCCCEEECCCCccCC-cChhhccCcccCCE
Confidence 455666666555322 211 1 26777777 7777776677788889999999999999884 44334788999999
Q ss_pred EEecCCcccCCCCCCcCCCCCcCEEEccCCcCCccCChhhhccCCCccEEEecCC-ccccccCccccCCCCCCEEeccCC
Q 042011 134 LFLVNDSLTGPFRLPIHSHRWLEFLDISNNNFRCHIPVEIGDILPSLKFFNISMN-ALDGSIPSSFGNMNFLRVLDLSNN 212 (361)
Q Consensus 134 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~~~~L~~L~l~~n 212 (361)
|++++|+++...+..|..+++|++|++++|+++ .++...+..+++|++|++++| .+....+..|..+++|++|++++|
T Consensus 128 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n 206 (452)
T 3zyi_A 128 LELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC 206 (452)
T ss_dssp EECCSSCCSBCCTTTSSSCTTCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTS
T ss_pred EECCCCcCCccChhhhcccCCCCEEECCCCCcc-eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCC
Confidence 999999998777777888999999999999998 777766667899999999984 455444457889999999999999
Q ss_pred cCccccchhhhhCCCCCcEEEeecCCCCCcccccccCCCCCCEEeccCCcCCccchhhhhcCCCCCEEECcCCcccccCC
Q 042011 213 QLTGEIPEHLAVGCVNLESLALSNNSLEGHMFSRNFNLTNLEWLQLGGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGNVN 292 (361)
Q Consensus 213 ~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 292 (361)
.++ .+|. + ..+++|++|++++|.+++..+..+..+++|+.|++++|++++..+..|..+++|+.|++++|++++..+
T Consensus 207 ~l~-~~~~-~-~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 283 (452)
T 3zyi_A 207 NIK-DMPN-L-TPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPH 283 (452)
T ss_dssp CCS-SCCC-C-TTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred ccc-cccc-c-cccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccCh
Confidence 998 6664 3 378999999999999999889999999999999999999998889999999999999999999998888
Q ss_pred CCCCCcCcceeeccccccccCCccccccccc
Q 042011 293 VPSSPANTLFNLSQNSRRFTSSISHSHLLNL 323 (361)
Q Consensus 293 ~~~~~~~~L~~l~l~~N~~~~~~~~~~~~~~ 323 (361)
..|..+++|+.|++++|+|.|++...++..|
T Consensus 284 ~~~~~l~~L~~L~L~~Np~~CdC~~~~l~~~ 314 (452)
T 3zyi_A 284 DLFTPLRYLVELHLHHNPWNCDCDILWLAWW 314 (452)
T ss_dssp TSSTTCTTCCEEECCSSCEECSTTTHHHHHH
T ss_pred HHhccccCCCEEEccCCCcCCCCCchHHHHH
Confidence 8889999999999999999999987776554
No 48
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.97 E-value=1.1e-30 Score=232.20 Aligned_cols=258 Identities=18% Similarity=0.176 Sum_probs=191.3
Q ss_pred CeEeCcCCcccccCCcccccCCCCCcEEEccCCCcccccccccccccCcccccEEeccCCCCCCCCCchhhcCCCCccEE
Q 042011 30 EELMLSNNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLIAPNFQLNSLSLSSDYGDGFIFPKFLYHQHDLALV 109 (361)
Q Consensus 30 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L 109 (361)
+.++++++.++ .+|. .+ .++|++|++++|.++. ..+..|..+++|++|
T Consensus 10 ~~l~c~~~~l~-~ip~-~~--~~~l~~L~L~~n~l~~----------------------------i~~~~~~~l~~L~~L 57 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPT-GI--PSSATRLELESNKLQS----------------------------LPHGVFDKLTQLTKL 57 (306)
T ss_dssp TEEECCSSCCS-SCCS-CC--CTTCCEEECCSSCCCC----------------------------CCTTTTTTCTTCSEE
T ss_pred CEEEcCCCCcc-cCCC-CC--CCCCCEEECCCCccCc----------------------------cCHhHhhccccCCEE
Confidence 46777777776 5663 22 2466666666666542 233345667777777
Q ss_pred EecCCcccCC--cChHHHhcCCCCcEEEecCCcccCCCCCCcCCCCCcCEEEccCCcCCccCCh-hhhccCCCccEEEec
Q 042011 110 DLSHIKMNGE--FPTWLLENNTKLETLFLVNDSLTGPFRLPIHSHRWLEFLDISNNNFRCHIPV-EIGDILPSLKFFNIS 186 (361)
Q Consensus 110 ~l~~n~l~~~--~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~l~~L~~L~L~ 186 (361)
++++|.++.. .+.. +..+++|++|++++|.+.. .+..+..+++|++|++++|+++ .++. ..+..+++|++|+++
T Consensus 58 ~L~~n~l~~~~~~~~~-~~~~~~L~~L~Ls~n~i~~-l~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~~l~~L~~L~l~ 134 (306)
T 2z66_A 58 SLSSNGLSFKGCCSQS-DFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDIS 134 (306)
T ss_dssp ECCSSCCCEEEEEEHH-HHSCSCCCEEECCSCSEEE-EEEEEETCTTCCEEECTTSEEE-SSTTTTTTTTCTTCCEEECT
T ss_pred ECCCCccCcccCcccc-cccccccCEEECCCCcccc-ChhhcCCCCCCCEEECCCCccc-ccccchhhhhccCCCEEECC
Confidence 7777776521 1344 4567777888887777764 4555777788888888888877 4443 334447888888888
Q ss_pred CCccccccCccccCCCCCCEEeccCCcCcc-ccchhhhhCCCCCcEEEeecCCCCCcccccccCCCCCCEEeccCCcCCc
Q 042011 187 MNALDGSIPSSFGNMNFLRVLDLSNNQLTG-EIPEHLAVGCVNLESLALSNNSLEGHMFSRNFNLTNLEWLQLGGNRFVG 265 (361)
Q Consensus 187 ~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~ 265 (361)
+|.+.+..+..+..+++|++|++++|.+.+ .+|..+. .+++|++|++++|++++..+..+..+++|+.|++++|++++
T Consensus 135 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 213 (306)
T 2z66_A 135 HTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT-ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS 213 (306)
T ss_dssp TSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCT-TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSB
T ss_pred CCcCCccchhhcccCcCCCEEECCCCccccccchhHHh-hCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCc
Confidence 888877777778888888888888888874 2454443 78889999999998888778888888999999999999987
Q ss_pred cchhhhhcCCCCCEEECcCCcccccCCCCCCCcC-cceeeccccccccCCccccccccc
Q 042011 266 EIPQSLSKCSSLEGLYLNNNSLSGNVNVPSSPAN-TLFNLSQNSRRFTSSISHSHLLNL 323 (361)
Q Consensus 266 ~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-~L~~l~l~~N~~~~~~~~~~~~~~ 323 (361)
..+..+..+++|+.|++++|++++..|..+..++ +|++|++++|+++|.++..++..|
T Consensus 214 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~ 272 (306)
T 2z66_A 214 LDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQW 272 (306)
T ss_dssp CCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHH
T ss_pred cChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHH
Confidence 7777888899999999999999988888888874 899999999999998876665554
No 49
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.97 E-value=4.2e-31 Score=234.86 Aligned_cols=278 Identities=21% Similarity=0.191 Sum_probs=192.4
Q ss_pred CeEeCCCccccCcCChhhhhccCCCCeEeCcCCcccccCCcccccCCCCCcEEEccCCCcccccccccccccCcccccEE
Q 042011 5 RILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLIAPNFQLNSL 84 (361)
Q Consensus 5 ~~L~L~~n~i~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L 84 (361)
+.++.+++.++ .+|. .+ .++|++|++++|+++ .++...|.++++|++|++++|.++...
T Consensus 10 ~~l~c~~~~l~-~ip~-~~--~~~l~~L~L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~~---------------- 68 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPT-GI--PSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKG---------------- 68 (306)
T ss_dssp TEEECCSSCCS-SCCS-CC--CTTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCEEE----------------
T ss_pred CEEEcCCCCcc-cCCC-CC--CCCCCEEECCCCccC-ccCHhHhhccccCCEEECCCCccCccc----------------
Confidence 57899999998 8887 33 379999999999998 777667899999999999999886321
Q ss_pred eccCCCCCCCCCchhhcCCCCccEEEecCCcccCCcChHHHhcCCCCcEEEecCCcccCCCC-CCcCCCCCcCEEEccCC
Q 042011 85 SLSSDYGDGFIFPKFLYHQHDLALVDLSHIKMNGEFPTWLLENNTKLETLFLVNDSLTGPFR-LPIHSHRWLEFLDISNN 163 (361)
Q Consensus 85 ~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n 163 (361)
..+..+..+++|++|++++|.++ .++.. +..+++|++|++++|++.+..+ ..+..+++|++|++++|
T Consensus 69 ----------~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n 136 (306)
T 2z66_A 69 ----------CCSQSDFGTTSLKYLDLSFNGVI-TMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT 136 (306)
T ss_dssp ----------EEEHHHHSCSCCCEEECCSCSEE-EEEEE-EETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTS
T ss_pred ----------CcccccccccccCEEECCCCccc-cChhh-cCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCC
Confidence 01233444566666666666665 44444 5566667777777666665433 45666777777777777
Q ss_pred cCCccCChhhhccCCCccEEEecCCcccc-ccCccccCCCCCCEEeccCCcCccccchhhhhCCCCCcEEEeecCCCCCc
Q 042011 164 NFRCHIPVEIGDILPSLKFFNISMNALDG-SIPSSFGNMNFLRVLDLSNNQLTGEIPEHLAVGCVNLESLALSNNSLEGH 242 (361)
Q Consensus 164 ~l~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~ 242 (361)
.+.+..+ ..+..+++|++|++++|.+++ ..|..+..+++|++|++++|.++ .++...+..+++|++|++++|++++.
T Consensus 137 ~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~ 214 (306)
T 2z66_A 137 HTRVAFN-GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSL 214 (306)
T ss_dssp CCEECST-TTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCSBC
T ss_pred cCCccch-hhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcC-CcCHHHhcCCCCCCEEECCCCccCcc
Confidence 7763333 333346777777777777764 46677777788888888888877 44333333677888888888888776
Q ss_pred ccccccCCCCCCEEeccCCcCCccchhhhhcCC-CCCEEECcCCcccccCCC-C-CCCcCcceeeccccccccCCccc
Q 042011 243 MFSRNFNLTNLEWLQLGGNRFVGEIPQSLSKCS-SLEGLYLNNNSLSGNVNV-P-SSPANTLFNLSQNSRRFTSSISH 317 (361)
Q Consensus 243 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~l~~N~l~~~~~~-~-~~~~~~L~~l~l~~N~~~~~~~~ 317 (361)
.+..+..+++|+.|++++|++++..+..+..++ +|+.|++++|.+++..+. + ...+...+.+....+.+.|..|.
T Consensus 215 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~ 292 (306)
T 2z66_A 215 DTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPS 292 (306)
T ss_dssp CSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESG
T ss_pred ChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCch
Confidence 666777788888888888888877777777774 888888888888753221 1 12234444555666677766553
No 50
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.97 E-value=7.7e-31 Score=237.88 Aligned_cols=279 Identities=19% Similarity=0.166 Sum_probs=227.6
Q ss_pred CCCCeEeCCCccccCcCChhhhhccCCCCeEeCcCCcccccCCcccccCCCCCcEEEccCCCcccccccccccccCcccc
Q 042011 2 TSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLIAPNFQL 81 (361)
Q Consensus 2 ~~L~~L~L~~n~i~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L 81 (361)
+.....+.+++.++ .+|. .+ .++|++|++++|+++ .++...|.++++|++|++++|.+++..+.. +..+.+|
T Consensus 31 ~~~~~c~~~~~~l~-~iP~-~~--~~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~---~~~l~~L 102 (353)
T 2z80_A 31 DRNGICKGSSGSLN-SIPS-GL--TEAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGINTIEEDS---FSSLGSL 102 (353)
T ss_dssp CTTSEEECCSTTCS-SCCT-TC--CTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTT---TTTCTTC
T ss_pred CCCeEeeCCCCCcc-cccc-cc--cccCcEEECCCCcCc-ccCHHHhccCCCCCEEECCCCccCccCHhh---cCCCCCC
Confidence 34456889999998 8987 33 258999999999998 566568999999999999999998766554 5667799
Q ss_pred cEEeccCCCCCCCCCchhhcCCCCccEEEecCCcccCCcCh-HHHhcCCCCcEEEecCC-cccCCCCCCcCCCCCcCEEE
Q 042011 82 NSLSLSSDYGDGFIFPKFLYHQHDLALVDLSHIKMNGEFPT-WLLENNTKLETLFLVND-SLTGPFRLPIHSHRWLEFLD 159 (361)
Q Consensus 82 ~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~ 159 (361)
++|++ ++|.++...+..+..+++|++|++++|.++ .++. ..+..+++|++|++++| .+....+..+..+++|++|+
T Consensus 103 ~~L~L-s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ 180 (353)
T 2z80_A 103 EHLDL-SYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELE 180 (353)
T ss_dssp CEEEC-CSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEE
T ss_pred CEEEC-CCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEE
Confidence 99999 999999777777999999999999999998 5665 44889999999999998 46666678899999999999
Q ss_pred ccCCcCCccCChhhhccCCCccEEEecCCccccccCccccCCCCCCEEeccCCcCccccchhh--hhCCCCCcEEEeecC
Q 042011 160 ISNNNFRCHIPVEIGDILPSLKFFNISMNALDGSIPSSFGNMNFLRVLDLSNNQLTGEIPEHL--AVGCVNLESLALSNN 237 (361)
Q Consensus 160 l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~--~~~~~~L~~L~L~~n 237 (361)
+++|++++..|..+.. +++|++|++++|.++......+..+++|++|++++|.+++..+..+ ....+.++.++++++
T Consensus 181 l~~n~l~~~~~~~l~~-l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~ 259 (353)
T 2z80_A 181 IDASDLQSYEPKSLKS-IQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNV 259 (353)
T ss_dssp EEETTCCEECTTTTTT-CSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESC
T ss_pred CCCCCcCccCHHHHhc-cccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccc
Confidence 9999998555666554 8999999999999974433345568999999999999984333222 124677999999999
Q ss_pred CCCC----cccccccCCCCCCEEeccCCcCCccchhhhhcCCCCCEEECcCCcccccC
Q 042011 238 SLEG----HMFSRNFNLTNLEWLQLGGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGNV 291 (361)
Q Consensus 238 ~l~~----~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 291 (361)
.+.+ ..+..+..+++|+.|++++|++++..+..|..+++|++|++++|.+.+..
T Consensus 260 ~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~ 317 (353)
T 2z80_A 260 KITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 317 (353)
T ss_dssp BCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred cccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcC
Confidence 8876 25667889999999999999999544444689999999999999998644
No 51
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=6.7e-33 Score=260.38 Aligned_cols=311 Identities=20% Similarity=0.133 Sum_probs=194.0
Q ss_pred CCCCeEeCCCccccCcCChhhhhccC----CCCeEeCcCCcccc----cCCcccccCCCCCcEEEccCCCcccccccccc
Q 042011 2 TSLRILDVSSNQLTGSISSSPLVHLT----SIEELMLSNNHFQI----PISLEPLFNHSRLKIFYADNNELNAEITQSHS 73 (361)
Q Consensus 2 ~~L~~L~L~~n~i~~~i~~~~~~~l~----~L~~L~Ls~n~l~~----~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 73 (361)
++|++|++++|.+++..+...+..++ +|++|++++|+++. .++ ..+..+++|++|++++|.+++.....+.
T Consensus 56 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~-~~l~~~~~L~~L~Ls~n~i~~~~~~~l~ 134 (461)
T 1z7x_W 56 PALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLS-STLRTLPTLQELHLSDNLLGDAGLQLLC 134 (461)
T ss_dssp TTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHH-HHTTSCTTCCEEECCSSBCHHHHHHHHH
T ss_pred CCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHH-HHHccCCceeEEECCCCcCchHHHHHHH
Confidence 55666666666665322321233344 46666666666652 223 3556666677777776666543322211
Q ss_pred c--ccCcccccEEeccCCCCCCCCC----chhhcCCCCccEEEecCCcccCCcChHHH----hcCCCCcEEEecCCcccC
Q 042011 74 L--IAPNFQLNSLSLSSDYGDGFIF----PKFLYHQHDLALVDLSHIKMNGEFPTWLL----ENNTKLETLFLVNDSLTG 143 (361)
Q Consensus 74 ~--~~~~~~L~~L~l~~~~~~~~~~----~~~l~~l~~L~~L~l~~n~l~~~~~~~~~----~~~~~L~~L~l~~n~l~~ 143 (361)
. ..+..+|++|++ ++|.++... +..+..+++|++|++++|.+++..+..+. ...++|++|++++|.++.
T Consensus 135 ~~l~~~~~~L~~L~L-~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~ 213 (461)
T 1z7x_W 135 EGLLDPQCRLEKLQL-EYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTS 213 (461)
T ss_dssp HHHTSTTCCCCEEEC-TTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBT
T ss_pred HHHhcCCCcceEEEC-CCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcH
Confidence 1 112335777777 666665532 44455567777777777776533222221 234577777777777764
Q ss_pred C----CCCCcCCCCCcCEEEccCCcCCccC----ChhhhccCCCccEEEecCCccccc----cCccccCCCCCCEEeccC
Q 042011 144 P----FRLPIHSHRWLEFLDISNNNFRCHI----PVEIGDILPSLKFFNISMNALDGS----IPSSFGNMNFLRVLDLSN 211 (361)
Q Consensus 144 ~----~~~~~~~l~~L~~L~l~~n~l~~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~~~~L~~L~l~~ 211 (361)
. ++..+..+++|++|++++|++++.. ...++..+++|++|++++|.+++. ++..+..+++|++|++++
T Consensus 214 ~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~ 293 (461)
T 1z7x_W 214 DNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAG 293 (461)
T ss_dssp THHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTT
T ss_pred HHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCC
Confidence 3 3445556677888888888776321 122332367788888888877743 455666778888888888
Q ss_pred CcCccccchhhh----hCCCCCcEEEeecCCCCCc----ccccccCCCCCCEEeccCCcCCccchhhhhc-----CCCCC
Q 042011 212 NQLTGEIPEHLA----VGCVNLESLALSNNSLEGH----MFSRNFNLTNLEWLQLGGNRFVGEIPQSLSK-----CSSLE 278 (361)
Q Consensus 212 n~l~~~~~~~~~----~~~~~L~~L~L~~n~l~~~----~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~-----l~~L~ 278 (361)
|.+.+..+..+. ...++|++|++++|.+++. .+..+..+++|+.|++++|++++..+..+.. .++|+
T Consensus 294 n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~ 373 (461)
T 1z7x_W 294 NELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLR 373 (461)
T ss_dssp CCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCC
T ss_pred CCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceE
Confidence 877643332222 1235788888888887764 3455566788888888888887665554443 57888
Q ss_pred EEECcCCcccc----cCCCCCCCcCcceeeccccccccCC
Q 042011 279 GLYLNNNSLSG----NVNVPSSPANTLFNLSQNSRRFTSS 314 (361)
Q Consensus 279 ~L~l~~N~l~~----~~~~~~~~~~~L~~l~l~~N~~~~~ 314 (361)
+|++++|++++ .+|..+..+++|++|++++|++++.
T Consensus 374 ~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 374 VLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA 413 (461)
T ss_dssp EEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred EEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHH
Confidence 88888888875 5666677788888888888888753
No 52
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.97 E-value=5.7e-29 Score=232.43 Aligned_cols=250 Identities=25% Similarity=0.292 Sum_probs=143.1
Q ss_pred CCCCeEeCcCCcccccCCcccccCCCCCcEEEccCCCcccccccccccccCcccccEEeccCCCCCCCCCchhhcCCCCc
Q 042011 27 TSIEELMLSNNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLIAPNFQLNSLSLSSDYGDGFIFPKFLYHQHDL 106 (361)
Q Consensus 27 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L 106 (361)
++|++|++++|+++ .+| .+.++++|++|++++|.+++. +.. ..+|++|++ ++|.+.+ .| .+..+++|
T Consensus 131 ~~L~~L~L~~n~l~-~lp--~~~~l~~L~~L~l~~N~l~~l-p~~------~~~L~~L~L-~~n~l~~-l~-~~~~l~~L 197 (454)
T 1jl5_A 131 PLLEYLGVSNNQLE-KLP--ELQNSSFLKIIDVDNNSLKKL-PDL------PPSLEFIAA-GNNQLEE-LP-ELQNLPFL 197 (454)
T ss_dssp TTCCEEECCSSCCS-SCC--CCTTCTTCCEEECCSSCCSCC-CCC------CTTCCEEEC-CSSCCSS-CC-CCTTCTTC
T ss_pred CCCCEEECcCCCCC-CCc--ccCCCCCCCEEECCCCcCccc-CCC------cccccEEEC-cCCcCCc-Cc-cccCCCCC
Confidence 46667777777666 355 366777777777777776642 221 126777777 6666665 33 46677777
Q ss_pred cEEEecCCcccCCcChHHHhcCCCCcEEEecCCcccCCCCCCcCCCCCcCEEEccCCcCCccCChhhhccCCCccEEEec
Q 042011 107 ALVDLSHIKMNGEFPTWLLENNTKLETLFLVNDSLTGPFRLPIHSHRWLEFLDISNNNFRCHIPVEIGDILPSLKFFNIS 186 (361)
Q Consensus 107 ~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~ 186 (361)
++|++++|.++ .+|.. .++|++|++++|.+. .+| .+..+++|++|++++|+++ .+|.. .++|+.|+++
T Consensus 198 ~~L~l~~N~l~-~l~~~----~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~-~l~~~----~~~L~~L~l~ 265 (454)
T 1jl5_A 198 TAIYADNNSLK-KLPDL----PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLK-TLPDL----PPSLEALNVR 265 (454)
T ss_dssp CEEECCSSCCS-SCCCC----CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCS-SCCSC----CTTCCEEECC
T ss_pred CEEECCCCcCC-cCCCC----cCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCC-ccccc----ccccCEEECC
Confidence 77777777776 34432 246777777777666 344 3667777777777777776 45432 3566666666
Q ss_pred CCccccccCccccCCCCCCEEeccCCcCcc--ccchh-------------hhhCCCCCcEEEeecCCCCCcccccccCCC
Q 042011 187 MNALDGSIPSSFGNMNFLRVLDLSNNQLTG--EIPEH-------------LAVGCVNLESLALSNNSLEGHMFSRNFNLT 251 (361)
Q Consensus 187 ~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~--~~~~~-------------~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~ 251 (361)
+|.+++ +|.. +++|++|++++|.+++ .+|.. +....++|++|++++|++++ .|.. ++
T Consensus 266 ~N~l~~-l~~~---~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~-lp~~---~~ 337 (454)
T 1jl5_A 266 DNYLTD-LPEL---PQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPAL---PP 337 (454)
T ss_dssp SSCCSC-CCCC---CTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSC-CCCC---CT
T ss_pred CCcccc-cCcc---cCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccc-cccc---CC
Confidence 666663 3332 2455566666555552 11110 00012467777777777665 3332 46
Q ss_pred CCCEEeccCCcCCccchhhhhcCCCCCEEECcCCcccc--cCCCCCCCc-------------CcceeeccccccccC
Q 042011 252 NLEWLQLGGNRFVGEIPQSLSKCSSLEGLYLNNNSLSG--NVNVPSSPA-------------NTLFNLSQNSRRFTS 313 (361)
Q Consensus 252 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~--~~~~~~~~~-------------~~L~~l~l~~N~~~~ 313 (361)
+|+.|++++|+++ .+|. .+++|++|++++|++++ .+|.++..+ ++|++|++++|++++
T Consensus 338 ~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~ 410 (454)
T 1jl5_A 338 RLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLRE 410 (454)
T ss_dssp TCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC------------------------
T ss_pred cCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCc
Confidence 7777888877777 3454 35778888888888877 566666666 678888888888876
No 53
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.97 E-value=1.7e-29 Score=222.24 Aligned_cols=251 Identities=18% Similarity=0.130 Sum_probs=130.1
Q ss_pred cEEEccCCCcccccccccccccCcccccEEeccCCCCCCCCCchhhcCCCCccEEEecCCcccCCcChHHHhcCCCCcEE
Q 042011 55 KIFYADNNELNAEITQSHSLIAPNFQLNSLSLSSDYGDGFIFPKFLYHQHDLALVDLSHIKMNGEFPTWLLENNTKLETL 134 (361)
Q Consensus 55 ~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L 134 (361)
+.++.+++.++... .. + ..+|++|++ +++.++...+..|..+++|++|++++|.+++..+.. +.++++|++|
T Consensus 14 ~~~~c~~~~l~~ip-~~---~--~~~l~~L~l-~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L 85 (285)
T 1ozn_A 14 VTTSCPQQGLQAVP-VG---I--PAASQRIFL-HGNRISHVPAASFRACRNLTILWLHSNVLARIDAAA-FTGLALLEQL 85 (285)
T ss_dssp CEEECCSSCCSSCC-TT---C--CTTCSEEEC-TTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTT-TTTCTTCCEE
T ss_pred eEEEcCcCCcccCC-cC---C--CCCceEEEe-eCCcCCccCHHHcccCCCCCEEECCCCccceeCHhh-cCCccCCCEE
Confidence 45666666555322 11 1 125666666 555555555555556666666666666655322333 5555666666
Q ss_pred EecCCc-ccCCCCCCcCCCCCcCEEEccCCcCCccCChhhhccCCCccEEEecCCccccccCccccCCCCCCEEeccCCc
Q 042011 135 FLVNDS-LTGPFRLPIHSHRWLEFLDISNNNFRCHIPVEIGDILPSLKFFNISMNALDGSIPSSFGNMNFLRVLDLSNNQ 213 (361)
Q Consensus 135 ~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~ 213 (361)
++++|. +....+..+..+++|++|++++|+++ .++...+..+++|++|++++|.+++..+..+..+++|++|++++|.
T Consensus 86 ~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 164 (285)
T 1ozn_A 86 DLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR 164 (285)
T ss_dssp ECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred eCCCCCCccccCHHHhcCCcCCCEEECCCCcCC-EECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCc
Confidence 666654 44444555555556666666666555 3333333335556666666655554444445555555555655555
Q ss_pred CccccchhhhhCCCCCcEEEeecCCCCCcccccccCCCCCCEEeccCCcCCccchhhhhcCCCCCEEECcCCcccccCCC
Q 042011 214 LTGEIPEHLAVGCVNLESLALSNNSLEGHMFSRNFNLTNLEWLQLGGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGNVNV 293 (361)
Q Consensus 214 l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 293 (361)
++ .++...+..+++|++|++++|.+++..+..+..+++|+.|++++|++++..+..+..+++|+.|++++|.+....+.
T Consensus 165 l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~ 243 (285)
T 1ozn_A 165 IS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA 243 (285)
T ss_dssp CC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG
T ss_pred cc-ccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCc
Confidence 55 44443333455555555555555555555555555555555555555544444555555555555555555432211
Q ss_pred CCCCcCcceeeccccccccCCcc
Q 042011 294 PSSPANTLFNLSQNSRRFTSSIS 316 (361)
Q Consensus 294 ~~~~~~~L~~l~l~~N~~~~~~~ 316 (361)
. .....++.+....+.+.|..|
T Consensus 244 ~-~~~~~l~~~~~~~~~~~c~~p 265 (285)
T 1ozn_A 244 R-PLWAWLQKFRGSSSEVPCSLP 265 (285)
T ss_dssp H-HHHHHHHHCCSEECCCBEEES
T ss_pred H-HHHHHHHhcccccCccccCCc
Confidence 0 111234444444455554444
No 54
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.97 E-value=3.8e-29 Score=224.13 Aligned_cols=223 Identities=19% Similarity=0.216 Sum_probs=112.7
Q ss_pred CCCCeEeCcCCcccccCCcccccCCCCCcEEEccCCCcccccccccccccCcccccEEeccCCCCCCCCCchhhcCCCCc
Q 042011 27 TSIEELMLSNNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLIAPNFQLNSLSLSSDYGDGFIFPKFLYHQHDL 106 (361)
Q Consensus 27 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L 106 (361)
++++.|+|++|+++ .+| ..+.++++|++|++++|.++ .+|..+..+++|
T Consensus 81 ~~l~~L~L~~n~l~-~lp-~~l~~l~~L~~L~L~~n~l~-----------------------------~lp~~~~~l~~L 129 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFP-DQAFRLSHLQHMTIDAAGLM-----------------------------ELPDTMQQFAGL 129 (328)
T ss_dssp TTCCEEEEESSCCS-SCC-SCGGGGTTCSEEEEESSCCC-----------------------------CCCSCGGGGTTC
T ss_pred cceeEEEccCCCch-hcC-hhhhhCCCCCEEECCCCCcc-----------------------------chhHHHhccCCC
Confidence 45555555555554 444 23444555555555555443 344456666777
Q ss_pred cEEEecCCcccCCcChHHHhcCCCCcEEEecCCcccCCCCCCcCC---------CCCcCEEEccCCcCCccCChhhhccC
Q 042011 107 ALVDLSHIKMNGEFPTWLLENNTKLETLFLVNDSLTGPFRLPIHS---------HRWLEFLDISNNNFRCHIPVEIGDIL 177 (361)
Q Consensus 107 ~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~---------l~~L~~L~l~~n~l~~~~~~~~~~~l 177 (361)
++|++++|.++ .+|.. +.++++|++|++++|++.+..|..+.. +++|++|++++|+++ .+|..+.. +
T Consensus 130 ~~L~Ls~n~l~-~lp~~-l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~-l 205 (328)
T 4fcg_A 130 ETLTLARNPLR-ALPAS-IASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIAN-L 205 (328)
T ss_dssp SEEEEESCCCC-CCCGG-GGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGG-C
T ss_pred CEEECCCCccc-cCcHH-HhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcC-C
Confidence 77777777776 66655 566777777777776666555554432 444555555555554 44444333 4
Q ss_pred CCccEEEecCCccccccCccccCCCCCCEEeccCCcCccccchhhhhCCCCCcEEEeecCCCCCcccccccCCCCCCEEe
Q 042011 178 PSLKFFNISMNALDGSIPSSFGNMNFLRVLDLSNNQLTGEIPEHLAVGCVNLESLALSNNSLEGHMFSRNFNLTNLEWLQ 257 (361)
Q Consensus 178 ~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ 257 (361)
++|++|++++|.++ .+|..+..+++|++|++++|.+.+.+|..+. .+++|++|++++|.+.+..|..+..+++|+.|+
T Consensus 206 ~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~-~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~ 283 (328)
T 4fcg_A 206 QNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFG-GRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLD 283 (328)
T ss_dssp TTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTT-CCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEE
T ss_pred CCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhc-CCCCCCEEECCCCCchhhcchhhhcCCCCCEEe
Confidence 45555555555444 2333344444444444444444434443332 344444444444444444444444444444444
Q ss_pred ccCCcCCccchhhhhcCCCCCEEECcCCc
Q 042011 258 LGGNRFVGEIPQSLSKCSSLEGLYLNNNS 286 (361)
Q Consensus 258 L~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 286 (361)
+++|.+.+.+|+.+..+++|+.+++..+.
T Consensus 284 L~~n~~~~~iP~~l~~L~~L~~l~l~~~~ 312 (328)
T 4fcg_A 284 LRGCVNLSRLPSLIAQLPANCIILVPPHL 312 (328)
T ss_dssp CTTCTTCCCCCGGGGGSCTTCEEECCGGG
T ss_pred CCCCCchhhccHHHhhccCceEEeCCHHH
Confidence 44444444444444444444444444433
No 55
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.97 E-value=1.7e-29 Score=222.27 Aligned_cols=254 Identities=17% Similarity=0.153 Sum_probs=141.0
Q ss_pred CeEeCCCccccCcCChhhhhccCCCCeEeCcCCcccccCCcccccCCCCCcEEEccCCCcccccccccccccCcccccEE
Q 042011 5 RILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLIAPNFQLNSL 84 (361)
Q Consensus 5 ~~L~L~~n~i~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L 84 (361)
+.++.+++.++ .+|. .+ .++|++|++++|+++ .++...|..+++|++|++++|.+++
T Consensus 14 ~~~~c~~~~l~-~ip~-~~--~~~l~~L~l~~n~i~-~~~~~~~~~~~~L~~L~l~~n~l~~------------------ 70 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPV-GI--PAASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLAR------------------ 70 (285)
T ss_dssp CEEECCSSCCS-SCCT-TC--CTTCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCE------------------
T ss_pred eEEEcCcCCcc-cCCc-CC--CCCceEEEeeCCcCC-ccCHHHcccCCCCCEEECCCCccce------------------
Confidence 34566666665 5554 22 346666666666665 3333455666666666666665544
Q ss_pred eccCCCCCCCCCchhhcCCCCccEEEecCCc-ccCCcChHHHhcCCCCcEEEecCCcccCCCCCCcCCCCCcCEEEccCC
Q 042011 85 SLSSDYGDGFIFPKFLYHQHDLALVDLSHIK-MNGEFPTWLLENNTKLETLFLVNDSLTGPFRLPIHSHRWLEFLDISNN 163 (361)
Q Consensus 85 ~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 163 (361)
..+..+..+++|++|++++|. +. .++...+..+++|++|++++|.+.+..+..+..+++|++|++++|
T Consensus 71 ----------~~~~~~~~l~~L~~L~l~~n~~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 139 (285)
T 1ozn_A 71 ----------IDAAAFTGLALLEQLDLSDNAQLR-SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDN 139 (285)
T ss_dssp ----------ECTTTTTTCTTCCEEECCSCTTCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred ----------eCHhhcCCccCCCEEeCCCCCCcc-ccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCC
Confidence 334445555566666666664 44 332222555666666666666665555555666666666666666
Q ss_pred cCCccCChhhhccCCCccEEEecCCccccccCccccCCCCCCEEeccCCcCccccchhhhhCCCCCcEEEeecCCCCCcc
Q 042011 164 NFRCHIPVEIGDILPSLKFFNISMNALDGSIPSSFGNMNFLRVLDLSNNQLTGEIPEHLAVGCVNLESLALSNNSLEGHM 243 (361)
Q Consensus 164 ~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 243 (361)
+++ .++...+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..|..+. .+++|+.|++++|.+++..
T Consensus 140 ~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~ 217 (285)
T 1ozn_A 140 ALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFR-DLGRLMTLYLFANNLSALP 217 (285)
T ss_dssp CCC-CCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTT-TCTTCCEEECCSSCCSCCC
T ss_pred ccc-ccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHcc-CcccccEeeCCCCcCCcCC
Confidence 665 44444333456666666666666644444566666666666666666633343333 5666666666666666655
Q ss_pred cccccCCCCCCEEeccCCcCCccchhhhhcCCCCCEEECcCCcccccCCCCC
Q 042011 244 FSRNFNLTNLEWLQLGGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGNVNVPS 295 (361)
Q Consensus 244 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~ 295 (361)
+..+..+++|+.|++++|++...-+.. .....++.+..+.+.+....|..+
T Consensus 218 ~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~l 268 (285)
T 1ozn_A 218 TEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQRL 268 (285)
T ss_dssp HHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGGG
T ss_pred HHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCchHh
Confidence 555666667777777777665432210 001122333355556655555544
No 56
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.97 E-value=1.1e-28 Score=230.26 Aligned_cols=248 Identities=19% Similarity=0.185 Sum_probs=150.3
Q ss_pred CCeEeCcCCcccccCCcccccCCCCCcEEEccCCCcccccccccccccCcccccEEeccCCCCCCCCCchhhcCCCCccE
Q 042011 29 IEELMLSNNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLIAPNFQLNSLSLSSDYGDGFIFPKFLYHQHDLAL 108 (361)
Q Consensus 29 L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~ 108 (361)
.+.++.++..++ .+|. .+ .++++.|++++|.++...+.. +..+.+|++|++ ++|.+....+..|..+++|++
T Consensus 45 ~~~v~c~~~~l~-~iP~-~~--~~~l~~L~L~~n~i~~~~~~~---~~~l~~L~~L~L-s~n~i~~i~~~~~~~l~~L~~ 116 (440)
T 3zyj_A 45 FSKVICVRKNLR-EVPD-GI--STNTRLLNLHENQIQIIKVNS---FKHLRHLEILQL-SRNHIRTIEIGAFNGLANLNT 116 (440)
T ss_dssp SCEEECCSCCCS-SCCS-CC--CTTCSEEECCSCCCCEECTTT---TSSCSSCCEEEC-CSSCCCEECGGGGTTCSSCCE
T ss_pred CCEEEeCCCCcC-cCCC-CC--CCCCcEEEccCCcCCeeCHHH---hhCCCCCCEEEC-CCCcCCccChhhccCCccCCE
Confidence 455666666555 4552 22 245666666666665544333 344456666666 666666555566666666666
Q ss_pred EEecCCcccCCcChHHHhcCCCCcEEEecCCcccCCCCCCcCCCCCcCEEEccCCcCCccCChhhhccCCCccEEEecCC
Q 042011 109 VDLSHIKMNGEFPTWLLENNTKLETLFLVNDSLTGPFRLPIHSHRWLEFLDISNNNFRCHIPVEIGDILPSLKFFNISMN 188 (361)
Q Consensus 109 L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n 188 (361)
|++++|.++ .++...+..+++|++|++++|.+....+..|..+++|++|++++|...+.++...+..+++|++|++++|
T Consensus 117 L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n 195 (440)
T 3zyj_A 117 LELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC 195 (440)
T ss_dssp EECCSSCCS-SCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTS
T ss_pred EECCCCcCC-eeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCC
Confidence 666666666 4444335666666666666666665555566666666666666633222555554555666666666666
Q ss_pred ccccccCccccCCCCCCEEeccCCcCccccchhhhhCCCCCcEEEeecCCCCCcccccccCCCCCCEEeccCCcCCccch
Q 042011 189 ALDGSIPSSFGNMNFLRVLDLSNNQLTGEIPEHLAVGCVNLESLALSNNSLEGHMFSRNFNLTNLEWLQLGGNRFVGEIP 268 (361)
Q Consensus 189 ~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 268 (361)
.++ .+| .+..+++|++|++++|.++ .++...+..+++|+.|++++|++++..+..+..+++|+.|++++|++++..+
T Consensus 196 ~l~-~~~-~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 272 (440)
T 3zyj_A 196 NLR-EIP-NLTPLIKLDELDLSGNHLS-AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPH 272 (440)
T ss_dssp CCS-SCC-CCTTCSSCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCT
T ss_pred cCc-ccc-ccCCCcccCEEECCCCccC-ccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccCh
Confidence 666 344 3566666667777766666 3433333466667777777776666666666666677777777776665555
Q ss_pred hhhhcCCCCCEEECcCCccc
Q 042011 269 QSLSKCSSLEGLYLNNNSLS 288 (361)
Q Consensus 269 ~~~~~l~~L~~L~l~~N~l~ 288 (361)
..|..+++|+.|++++|.+.
T Consensus 273 ~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 273 DLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp TTTSSCTTCCEEECCSSCEE
T ss_pred hHhccccCCCEEEcCCCCcc
Confidence 56666667777777766653
No 57
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.96 E-value=1.2e-30 Score=233.06 Aligned_cols=258 Identities=19% Similarity=0.214 Sum_probs=152.9
Q ss_pred CCeEeCCCccccCcCChhhhhccCCCCeEeCcCCcccccCCcccccCCCCCcEEEccCCCcccccccccccccCcccccE
Q 042011 4 LRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLIAPNFQLNS 83 (361)
Q Consensus 4 L~~L~L~~n~i~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~ 83 (361)
++..+++.+.+. ..+...+..+++|++|++++|+++ .++...|..+++|++|++++|.+++..+ +..+.+|++
T Consensus 12 l~i~~ls~~~l~-~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-----~~~l~~L~~ 84 (317)
T 3o53_A 12 YKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLELLNLSSNVLYETLD-----LESLSTLRT 84 (317)
T ss_dssp EEEESCCTTTHH-HHHHHHHTTGGGCSEEECTTSCCC-CCCHHHHTTCTTCCEEECTTSCCEEEEE-----ETTCTTCCE
T ss_pred eeEeeccccchh-hhHHHHhccCCCCCEEECcCCccC-cCCHHHhhCCCcCCEEECCCCcCCcchh-----hhhcCCCCE
Confidence 455667777776 455546777889999999999998 4544678899999999999998875432 344556666
Q ss_pred EeccCCCCCCCCCchhhcCCCCccEEEecCCcccCCcChHHHhcCCCCcEEEecCCcccCCCCCCcCCCCCcCEEEccCC
Q 042011 84 LSLSSDYGDGFIFPKFLYHQHDLALVDLSHIKMNGEFPTWLLENNTKLETLFLVNDSLTGPFRLPIHSHRWLEFLDISNN 163 (361)
Q Consensus 84 L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 163 (361)
|++ ++|.+++. ...++|++|++++|.+++ ++. ..+++|++|++++|++.+..+..+..+++|++|++++|
T Consensus 85 L~L-s~n~l~~l-----~~~~~L~~L~l~~n~l~~-~~~---~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N 154 (317)
T 3o53_A 85 LDL-NNNYVQEL-----LVGPSIETLHAANNNISR-VSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN 154 (317)
T ss_dssp EEC-CSSEEEEE-----EECTTCCEEECCSSCCSE-EEE---CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTS
T ss_pred EEC-cCCccccc-----cCCCCcCEEECCCCccCC-cCc---cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCC
Confidence 666 55555432 123566666666666652 222 12455666666666666555555556666666666666
Q ss_pred cCCccCChhhhccCCCccEEEecCCccccccCccccCCCCCCEEeccCCcCccccchhhhhCCCCCcEEEeecCCCCCcc
Q 042011 164 NFRCHIPVEIGDILPSLKFFNISMNALDGSIPSSFGNMNFLRVLDLSNNQLTGEIPEHLAVGCVNLESLALSNNSLEGHM 243 (361)
Q Consensus 164 ~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 243 (361)
.+++..+..+...+++|++|++++|.+++. +. ...+++|++|++++|.++ .+|..+. .+++|++|++++|++++ .
T Consensus 155 ~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~-~l~~~~~-~l~~L~~L~L~~N~l~~-l 229 (317)
T 3o53_A 155 EIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLA-FMGPEFQ-SAAGVTWISLRNNKLVL-I 229 (317)
T ss_dssp CCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCC-EECGGGG-GGTTCSEEECTTSCCCE-E
T ss_pred CCCcccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCC-cchhhhc-ccCcccEEECcCCcccc-h
Confidence 665333333333355666666666666532 21 223555666666666655 4444433 45555555555555554 3
Q ss_pred cccccCCCCCCEEeccCCcCC-ccchhhhhcCCCCCEEECc
Q 042011 244 FSRNFNLTNLEWLQLGGNRFV-GEIPQSLSKCSSLEGLYLN 283 (361)
Q Consensus 244 ~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~ 283 (361)
|..+..+++|+.|++++|++. +..+..+..+++|+.++++
T Consensus 230 ~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 230 EKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp CTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHH
T ss_pred hhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECC
Confidence 444555555555555555555 4445555555555555555
No 58
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=1.7e-28 Score=229.79 Aligned_cols=248 Identities=18% Similarity=0.143 Sum_probs=162.6
Q ss_pred CCeEeCcCCcccccCCcccccCCCCCcEEEccCCCcccccccccccccCcccccEEeccCCCCCCCCCchhhcCCCCccE
Q 042011 29 IEELMLSNNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLIAPNFQLNSLSLSSDYGDGFIFPKFLYHQHDLAL 108 (361)
Q Consensus 29 L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~ 108 (361)
...++.++..++ .+|. .+ .+++++|++++|.+++..+.. +..+.+|++|++ ++|.+....+..|..+++|++
T Consensus 56 ~~~v~c~~~~l~-~iP~-~~--~~~l~~L~L~~n~i~~~~~~~---~~~l~~L~~L~L-s~n~i~~~~~~~~~~l~~L~~ 127 (452)
T 3zyi_A 56 FSKVVCTRRGLS-EVPQ-GI--PSNTRYLNLMENNIQMIQADT---FRHLHHLEVLQL-GRNSIRQIEVGAFNGLASLNT 127 (452)
T ss_dssp SCEEECCSSCCS-SCCS-CC--CTTCSEEECCSSCCCEECTTT---TTTCTTCCEEEC-CSSCCCEECTTTTTTCTTCCE
T ss_pred CcEEEECCCCcC-ccCC-CC--CCCccEEECcCCcCceECHHH---cCCCCCCCEEEC-CCCccCCcChhhccCcccCCE
Confidence 456666666665 5552 22 246667777777666554444 445556777777 666666666666777777777
Q ss_pred EEecCCcccCCcChHHHhcCCCCcEEEecCCcccCCCCCCcCCCCCcCEEEccCCcCCccCChhhhccCCCccEEEecCC
Q 042011 109 VDLSHIKMNGEFPTWLLENNTKLETLFLVNDSLTGPFRLPIHSHRWLEFLDISNNNFRCHIPVEIGDILPSLKFFNISMN 188 (361)
Q Consensus 109 L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n 188 (361)
|++++|.++ .++...+.++++|++|++++|.+....+..|..+++|++|++++|...+.++...+..+++|++|++++|
T Consensus 128 L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n 206 (452)
T 3zyi_A 128 LELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC 206 (452)
T ss_dssp EECCSSCCS-BCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTS
T ss_pred EECCCCcCC-ccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCC
Confidence 777777776 4444446667777777777777766555667777777777777633222566555555777777777777
Q ss_pred ccccccCccccCCCCCCEEeccCCcCccccchhhhhCCCCCcEEEeecCCCCCcccccccCCCCCCEEeccCCcCCccch
Q 042011 189 ALDGSIPSSFGNMNFLRVLDLSNNQLTGEIPEHLAVGCVNLESLALSNNSLEGHMFSRNFNLTNLEWLQLGGNRFVGEIP 268 (361)
Q Consensus 189 ~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 268 (361)
.++ .+| .+..+++|++|++++|.++ .++...+..+++|+.|++++|++++..+..+..+++|+.|++++|++++..+
T Consensus 207 ~l~-~~~-~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 283 (452)
T 3zyi_A 207 NIK-DMP-NLTPLVGLEELEMSGNHFP-EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPH 283 (452)
T ss_dssp CCS-SCC-CCTTCTTCCEEECTTSCCS-EECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred ccc-ccc-cccccccccEEECcCCcCc-ccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccCh
Confidence 776 333 3666777777777777777 4433333467777777777777777666677777777777777777776666
Q ss_pred hhhhcCCCCCEEECcCCccc
Q 042011 269 QSLSKCSSLEGLYLNNNSLS 288 (361)
Q Consensus 269 ~~~~~l~~L~~L~l~~N~l~ 288 (361)
..|..+++|+.|++++|.+.
T Consensus 284 ~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 284 DLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp TSSTTCTTCCEEECCSSCEE
T ss_pred HHhccccCCCEEEccCCCcC
Confidence 66667777777777777654
No 59
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=4.9e-29 Score=223.39 Aligned_cols=227 Identities=18% Similarity=0.164 Sum_probs=192.9
Q ss_pred ccccEEeccCCCCCCCCCchhhcCCCCccEEEecCCcccCCcChHHHhcCCCCcEEEecCCcccCCCCCCcCCCCCcCEE
Q 042011 79 FQLNSLSLSSDYGDGFIFPKFLYHQHDLALVDLSHIKMNGEFPTWLLENNTKLETLFLVNDSLTGPFRLPIHSHRWLEFL 158 (361)
Q Consensus 79 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 158 (361)
..+++|++ +++.+. .+|..+..+++|++|++++|.++ .+|.. +..+++|++|++++|.+. .+|..+..+++|++|
T Consensus 81 ~~l~~L~L-~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~-~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L 155 (328)
T 4fcg_A 81 PGRVALEL-RSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDT-MQQFAGLETLTLARNPLR-ALPASIASLNRLREL 155 (328)
T ss_dssp TTCCEEEE-ESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSC-GGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEE
T ss_pred cceeEEEc-cCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHH-HhccCCCCEEECCCCccc-cCcHHHhcCcCCCEE
Confidence 36777777 777776 45666777999999999999998 78876 688999999999999988 568888899999999
Q ss_pred EccCCcCCccCChhhh--------ccCCCccEEEecCCccccccCccccCCCCCCEEeccCCcCccccchhhhhCCCCCc
Q 042011 159 DISNNNFRCHIPVEIG--------DILPSLKFFNISMNALDGSIPSSFGNMNFLRVLDLSNNQLTGEIPEHLAVGCVNLE 230 (361)
Q Consensus 159 ~l~~n~l~~~~~~~~~--------~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~ 230 (361)
++++|.+.+.+|..+. ..+++|++|++++|.++ .+|..+..+++|++|++++|.++ .+|..+. .+++|+
T Consensus 156 ~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~-~l~~L~ 232 (328)
T 4fcg_A 156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIH-HLPKLE 232 (328)
T ss_dssp EEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGG-GCTTCC
T ss_pred ECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhc-cCCCCC
Confidence 9999877767877653 24789999999999988 78888889999999999999998 6777655 789999
Q ss_pred EEEeecCCCCCcccccccCCCCCCEEeccCCcCCccchhhhhcCCCCCEEECcCCcccccCCCCCCCcCcceeecccccc
Q 042011 231 SLALSNNSLEGHMFSRNFNLTNLEWLQLGGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGNVNVPSSPANTLFNLSQNSRR 310 (361)
Q Consensus 231 ~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~L~~l~l~~N~ 310 (361)
+|++++|.+.+..|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.+++..|.
T Consensus 233 ~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~ 312 (328)
T 4fcg_A 233 ELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHL 312 (328)
T ss_dssp EEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGG
T ss_pred EEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHH
Confidence 99999998888888888899999999999998888888889999999999999999988999999999999999888776
Q ss_pred ccC
Q 042011 311 FTS 313 (361)
Q Consensus 311 ~~~ 313 (361)
+..
T Consensus 313 ~~~ 315 (328)
T 4fcg_A 313 QAQ 315 (328)
T ss_dssp SCC
T ss_pred HHH
Confidence 654
No 60
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.96 E-value=2.9e-28 Score=234.68 Aligned_cols=262 Identities=20% Similarity=0.203 Sum_probs=218.6
Q ss_pred CCCeEeCCCccccCcCChhhhhccCCCCeEeCcCCcccccCCcccccCCCCCcEEEccCCCcccccccccccccCccccc
Q 042011 3 SLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLIAPNFQLN 82 (361)
Q Consensus 3 ~L~~L~L~~n~i~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~ 82 (361)
+++.|++++|.++ .+|. .+. ++|++|++++|.++ .+|. .+++|++|++++|.++.... .+.+|+
T Consensus 41 ~l~~L~ls~n~L~-~lp~-~l~--~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~lp~-------~l~~L~ 104 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPD-CLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSLPV-------LPPGLL 104 (622)
T ss_dssp CCCEEECCSSCCS-CCCS-CCC--TTCSEEEECSCCCS-CCCC----CCTTCCEEEECSCCCSCCCC-------CCTTCC
T ss_pred CCcEEEecCCCcC-ccCh-hhC--CCCcEEEecCCCCC-CCCC----cCCCCCEEEcCCCcCCcCCC-------CCCCCC
Confidence 5889999999998 8997 343 89999999999998 6773 57999999999999875332 345999
Q ss_pred EEeccCCCCCCCCCchhhcCCCCccEEEecCCcccCCcChHHHhcCCCCcEEEecCCcccCCCCCCcCCCCCcCEEEccC
Q 042011 83 SLSLSSDYGDGFIFPKFLYHQHDLALVDLSHIKMNGEFPTWLLENNTKLETLFLVNDSLTGPFRLPIHSHRWLEFLDISN 162 (361)
Q Consensus 83 ~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 162 (361)
+|++ ++|.++.... .+++|+.|++++|+++ .+|.. +++|++|++++|++++ +|. .+++|+.|++++
T Consensus 105 ~L~L-s~N~l~~l~~----~l~~L~~L~L~~N~l~-~lp~~----l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~ 170 (622)
T 3g06_A 105 ELSI-FSNPLTHLPA----LPSGLCKLWIFGNQLT-SLPVL----PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYN 170 (622)
T ss_dssp EEEE-CSCCCCCCCC----CCTTCCEEECCSSCCS-CCCCC----CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCS
T ss_pred EEEC-cCCcCCCCCC----CCCCcCEEECCCCCCC-cCCCC----CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCC
Confidence 9999 8898886433 5789999999999998 56653 5899999999999986 333 346899999999
Q ss_pred CcCCccCChhhhccCCCccEEEecCCccccccCccccCCCCCCEEeccCCcCccccchhhhhCCCCCcEEEeecCCCCCc
Q 042011 163 NNFRCHIPVEIGDILPSLKFFNISMNALDGSIPSSFGNMNFLRVLDLSNNQLTGEIPEHLAVGCVNLESLALSNNSLEGH 242 (361)
Q Consensus 163 n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~ 242 (361)
|.++ .+| ..+++|+.|++++|.++ .+|.. +++|+.|++++|.++ .+|. .+++|+.|++++|.+++.
T Consensus 171 N~l~-~l~----~~~~~L~~L~Ls~N~l~-~l~~~---~~~L~~L~L~~N~l~-~l~~----~~~~L~~L~Ls~N~L~~l 236 (622)
T 3g06_A 171 NQLT-SLP----MLPSGLQELSVSDNQLA-SLPTL---PSELYKLWAYNNRLT-SLPA----LPSGLKELIVSGNRLTSL 236 (622)
T ss_dssp SCCS-CCC----CCCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-SCCC----CCTTCCEEECCSSCCSCC
T ss_pred CCCC-CCc----ccCCCCcEEECCCCCCC-CCCCc---cchhhEEECcCCccc-ccCC----CCCCCCEEEccCCccCcC
Confidence 9998 677 33689999999999998 45543 478999999999998 7774 468899999999999883
Q ss_pred ccccccCCCCCCEEeccCCcCCccchhhhhcCCCCCEEECcCCcccccCCCCCCCcCcceeeccccccccCCccc
Q 042011 243 MFSRNFNLTNLEWLQLGGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGNVNVPSSPANTLFNLSQNSRRFTSSISH 317 (361)
Q Consensus 243 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~~~ 317 (361)
+ ..+++|+.|++++|+++ .+|. .+++|+.|++++|+++ .+|..+..+++|+.|++++|++++..+.
T Consensus 237 -p---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~ 302 (622)
T 3g06_A 237 -P---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 302 (622)
T ss_dssp -C---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred -C---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHH
Confidence 4 45689999999999999 4555 5789999999999999 5677899999999999999999876553
No 61
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.96 E-value=3.5e-29 Score=233.86 Aligned_cols=247 Identities=23% Similarity=0.262 Sum_probs=131.5
Q ss_pred CCCCeEeCCCccccCcCChhhhhccCCCCeEeCcCCcccccCCcccccCCCC-------------CcEEEccCCCccccc
Q 042011 2 TSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSR-------------LKIFYADNNELNAEI 68 (361)
Q Consensus 2 ~~L~~L~L~~n~i~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~-------------L~~L~l~~n~~~~~~ 68 (361)
+.|++|++++|.+ +.+|+ .++++++|++|++++|++++.+| ..+.++.+ +++|++++|.+++..
T Consensus 11 ~~L~~L~l~~n~l-~~iP~-~i~~L~~L~~L~l~~n~~~~~~p-~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp 87 (454)
T 1jl5_A 11 TFLQEPLRHSSNL-TEMPV-EAENVKSKTEYYNAWSEWERNAP-PGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLP 87 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSC-TTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCC
T ss_pred ccchhhhcccCch-hhCCh-hHhcccchhhhhccCCcccccCC-cccccchhcchhhhhhhhccCCCEEEecCCccccCC
Confidence 5689999999999 59998 79999999999999999987787 56777665 488888888876532
Q ss_pred ccccccccCcccccEEeccCCCCCCCCCchhhcCCCCccEEEecCCcccCCcChHHHhcCCCCcEEEecCCcccCCCCCC
Q 042011 69 TQSHSLIAPNFQLNSLSLSSDYGDGFIFPKFLYHQHDLALVDLSHIKMNGEFPTWLLENNTKLETLFLVNDSLTGPFRLP 148 (361)
Q Consensus 69 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 148 (361)
. . ..+|++|++ ++|.+++ +|.. .++|++|++++|.++ .++.. .++|++|++++|++.+ +| .
T Consensus 88 ~-~------~~~L~~L~l-~~n~l~~-lp~~---~~~L~~L~l~~n~l~-~l~~~----~~~L~~L~L~~n~l~~-lp-~ 148 (454)
T 1jl5_A 88 E-L------PPHLESLVA-SCNSLTE-LPEL---PQSLKSLLVDNNNLK-ALSDL----PPLLEYLGVSNNQLEK-LP-E 148 (454)
T ss_dssp S-C------CTTCSEEEC-CSSCCSS-CCCC---CTTCCEEECCSSCCS-CCCSC----CTTCCEEECCSSCCSS-CC-C
T ss_pred C-C------cCCCCEEEc-cCCcCCc-cccc---cCCCcEEECCCCccC-cccCC----CCCCCEEECcCCCCCC-Cc-c
Confidence 1 1 137777777 7777765 3332 356666677666665 33321 1466666666666664 44 4
Q ss_pred cCCCCCcCEEEccCCcCCccCChhhhccCCCccEEEecCCccccccCccccCCCCCCEEeccCCcCccccchhhhhCCCC
Q 042011 149 IHSHRWLEFLDISNNNFRCHIPVEIGDILPSLKFFNISMNALDGSIPSSFGNMNFLRVLDLSNNQLTGEIPEHLAVGCVN 228 (361)
Q Consensus 149 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~ 228 (361)
+..+++|++|++++|+++ .+|.. .++|++|++++|.+++ +| .++.+++|++|++++|.++ .+|. ..++
T Consensus 149 ~~~l~~L~~L~l~~N~l~-~lp~~----~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~-~l~~----~~~~ 216 (454)
T 1jl5_A 149 LQNSSFLKIIDVDNNSLK-KLPDL----PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLK-KLPD----LPLS 216 (454)
T ss_dssp CTTCTTCCEEECCSSCCS-CCCCC----CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCS-SCCC----CCTT
T ss_pred cCCCCCCCEEECCCCcCc-ccCCC----cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCC-cCCC----CcCc
Confidence 666666666666666665 44432 2366666666666663 44 3566666666666666665 3432 1235
Q ss_pred CcEEEeecCCCCCcccccccCCCCCCEEeccCCcCCccchhhhhcCCCCCEEECcCCccc
Q 042011 229 LESLALSNNSLEGHMFSRNFNLTNLEWLQLGGNRFVGEIPQSLSKCSSLEGLYLNNNSLS 288 (361)
Q Consensus 229 L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~ 288 (361)
|++|++++|.++. .| .+..+++|+.|++++|++++ +|.. +++|+.|++++|+++
T Consensus 217 L~~L~l~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~ 270 (454)
T 1jl5_A 217 LESIVAGNNILEE-LP-ELQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLT 270 (454)
T ss_dssp CCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCS
T ss_pred ccEEECcCCcCCc-cc-ccCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCccc
Confidence 5555555555553 23 24555555555555555553 2221 234444444444444
No 62
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.96 E-value=3.2e-31 Score=248.95 Aligned_cols=307 Identities=18% Similarity=0.127 Sum_probs=149.6
Q ss_pred CCCeEeCCCccccCcCChhhhhccCCCCeEeCcCCcccc----cCCcccccCCCCCcEEEccCCCccccccccccc-ccC
Q 042011 3 SLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQI----PISLEPLFNHSRLKIFYADNNELNAEITQSHSL-IAP 77 (361)
Q Consensus 3 ~L~~L~L~~n~i~~~i~~~~~~~l~~L~~L~Ls~n~l~~----~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~-~~~ 77 (361)
+|++||+++|+++.......+..+++|++|++++|++++ .++ ..+..+++|++|++++|.+.+.....+.. +..
T Consensus 4 ~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~-~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDIS-SALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHH-HHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred cceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHH-HHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 455555555555422212124555555555555555541 112 23444555555555555554322211110 010
Q ss_pred c-ccccEEeccCCCCCCC----CCchhhcCCCCccEEEecCCcccCCcChH-----------------------------
Q 042011 78 N-FQLNSLSLSSDYGDGF----IFPKFLYHQHDLALVDLSHIKMNGEFPTW----------------------------- 123 (361)
Q Consensus 78 ~-~~L~~L~l~~~~~~~~----~~~~~l~~l~~L~~L~l~~n~l~~~~~~~----------------------------- 123 (361)
. .+|++|++ ++|.++. ..+..+..+++|++|++++|.+++..+..
T Consensus 83 ~~~~L~~L~L-~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 161 (461)
T 1z7x_W 83 PSCKIQKLSL-QNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP 161 (461)
T ss_dssp TTCCCCEEEC-TTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred CCCceeEEEc-cCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHH
Confidence 0 13555555 5555442 22444555555555555555544222221
Q ss_pred ---HHhcCCCCcEEEecCCcccCCCCCCcC-----CCCCcCEEEccCCcCCcc----CChhhhccCCCccEEEecCCccc
Q 042011 124 ---LLENNTKLETLFLVNDSLTGPFRLPIH-----SHRWLEFLDISNNNFRCH----IPVEIGDILPSLKFFNISMNALD 191 (361)
Q Consensus 124 ---~~~~~~~L~~L~l~~n~l~~~~~~~~~-----~l~~L~~L~l~~n~l~~~----~~~~~~~~l~~L~~L~L~~n~l~ 191 (361)
.+..+++|++|++++|.+....+..+. ..++|++|++++|.+++. ++..+.. +++|++|++++|.++
T Consensus 162 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~-~~~L~~L~Ls~n~l~ 240 (461)
T 1z7x_W 162 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVAS-KASLRELALGSNKLG 240 (461)
T ss_dssp HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHH-CTTCCEEECCSSBCH
T ss_pred HHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHh-CCCccEEeccCCcCC
Confidence 133344455555554444322111111 133455555555555421 2222222 456666666666554
Q ss_pred ccc-----CccccCCCCCCEEeccCCcCccc----cchhhhhCCCCCcEEEeecCCCCCccccccc-----CCCCCCEEe
Q 042011 192 GSI-----PSSFGNMNFLRVLDLSNNQLTGE----IPEHLAVGCVNLESLALSNNSLEGHMFSRNF-----NLTNLEWLQ 257 (361)
Q Consensus 192 ~~~-----~~~l~~~~~L~~L~l~~n~l~~~----~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~-----~~~~L~~L~ 257 (361)
+.. +..+..+++|++|++++|.+++. ++..+. .+++|++|++++|.+++..+..+. ..++|+.|+
T Consensus 241 ~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~-~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~ 319 (461)
T 1z7x_W 241 DVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLR-AKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLW 319 (461)
T ss_dssp HHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHH-HCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEE
T ss_pred hHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHh-hCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeE
Confidence 221 12222456666666666666522 333332 466666777766666543222222 225677777
Q ss_pred ccCCcCCcc----chhhhhcCCCCCEEECcCCcccccCCCCCC-----CcCcceeeccccccccC
Q 042011 258 LGGNRFVGE----IPQSLSKCSSLEGLYLNNNSLSGNVNVPSS-----PANTLFNLSQNSRRFTS 313 (361)
Q Consensus 258 L~~n~l~~~----~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~-----~~~~L~~l~l~~N~~~~ 313 (361)
+++|.+++. ++..+..+++|++|++++|.+++..+..+. ..++|++|++++|.+++
T Consensus 320 L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~ 384 (461)
T 1z7x_W 320 VKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSD 384 (461)
T ss_dssp CTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCH
T ss_pred cCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCCh
Confidence 777776654 345566667777777777777654333222 15677788888877764
No 63
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.96 E-value=3.3e-30 Score=229.66 Aligned_cols=205 Identities=25% Similarity=0.249 Sum_probs=151.3
Q ss_pred CCCCccEEEecCCcccCCcChHHH-hcCCCCcEEEecCCcccCCCCCCcCCC-----CCcCEEEccCCcCCccCChhhhc
Q 042011 102 HQHDLALVDLSHIKMNGEFPTWLL-ENNTKLETLFLVNDSLTGPFRLPIHSH-----RWLEFLDISNNNFRCHIPVEIGD 175 (361)
Q Consensus 102 ~l~~L~~L~l~~n~l~~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~l-----~~L~~L~l~~n~l~~~~~~~~~~ 175 (361)
.+++|++|++++|.+++.+|..++ ..+++|++|++++|++++. |..+..+ ++|++|++++|+++ .++...+.
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~-~~~~~~~~ 170 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSL-NFSCEQVR 170 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCC-CCCTTTCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCc-cchHHHhc
Confidence 567777777777777766666532 6677777777777777765 5555555 67777777777777 44433333
Q ss_pred cCCCccEEEecCCccccc--cCccc--cCCCCCCEEeccCCcCcc--ccchhhhhCCCCCcEEEeecCCCCCccc-cccc
Q 042011 176 ILPSLKFFNISMNALDGS--IPSSF--GNMNFLRVLDLSNNQLTG--EIPEHLAVGCVNLESLALSNNSLEGHMF-SRNF 248 (361)
Q Consensus 176 ~l~~L~~L~L~~n~l~~~--~~~~l--~~~~~L~~L~l~~n~l~~--~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~ 248 (361)
.+++|++|++++|.+.+. .+..+ ..+++|++|++++|.+++ .++..++..+++|++|++++|++++..+ ..+.
T Consensus 171 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 250 (312)
T 1wwl_A 171 VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCD 250 (312)
T ss_dssp CCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCC
T ss_pred cCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhh
Confidence 477788888888876543 22233 778888888888888872 3344555578899999999999988653 4566
Q ss_pred CCCCCCEEeccCCcCCccchhhhhcCCCCCEEECcCCcccccCCCCCCCcCcceeeccccccccC
Q 042011 249 NLTNLEWLQLGGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGNVNVPSSPANTLFNLSQNSRRFTS 313 (361)
Q Consensus 249 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~ 313 (361)
.+++|+.|++++|+++ .+|..+. ++|++|++++|++++. |. +..+++|++|++++|++++
T Consensus 251 ~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 251 WPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred hcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 7889999999999998 6676665 8899999999999876 55 8889999999999999886
No 64
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.96 E-value=5.8e-29 Score=222.08 Aligned_cols=239 Identities=19% Similarity=0.136 Sum_probs=108.9
Q ss_pred CCeEeCcCCcccccCCcccccCCCCCcEEEccCCCcccccccccccccCcccccEEeccCCCCCCCCCchhhcCCCCccE
Q 042011 29 IEELMLSNNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLIAPNFQLNSLSLSSDYGDGFIFPKFLYHQHDLAL 108 (361)
Q Consensus 29 L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~ 108 (361)
++..+++++.+. ..+...+..+++|++|++++|.+++ ..+..+..+++|++
T Consensus 12 l~i~~ls~~~l~-~~~~~~~~~~~~L~~L~L~~n~l~~----------------------------~~~~~~~~l~~L~~ 62 (317)
T 3o53_A 12 YKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQ----------------------------ISAADLAPFTKLEL 62 (317)
T ss_dssp EEEESCCTTTHH-HHHHHHHTTGGGCSEEECTTSCCCC----------------------------CCHHHHTTCTTCCE
T ss_pred eeEeeccccchh-hhHHHHhccCCCCCEEECcCCccCc----------------------------CCHHHhhCCCcCCE
Confidence 344455555554 2222334445556666666665554 33344444444444
Q ss_pred EEecCCcccCCcChHHHhcCCCCcEEEecCCcccCCCCCCcCCCCCcCEEEccCCcCCccCChhhhccCCCccEEEecCC
Q 042011 109 VDLSHIKMNGEFPTWLLENNTKLETLFLVNDSLTGPFRLPIHSHRWLEFLDISNNNFRCHIPVEIGDILPSLKFFNISMN 188 (361)
Q Consensus 109 L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n 188 (361)
|++++|.+++..+ +..+++|++|++++|.+++.. ..++|++|++++|+++ .++.. .+++|++|++++|
T Consensus 63 L~Ls~n~l~~~~~---~~~l~~L~~L~Ls~n~l~~l~-----~~~~L~~L~l~~n~l~-~~~~~---~~~~L~~L~l~~N 130 (317)
T 3o53_A 63 LNLSSNVLYETLD---LESLSTLRTLDLNNNYVQELL-----VGPSIETLHAANNNIS-RVSCS---RGQGKKNIYLANN 130 (317)
T ss_dssp EECTTSCCEEEEE---ETTCTTCCEEECCSSEEEEEE-----ECTTCCEEECCSSCCS-EEEEC---CCSSCEEEECCSS
T ss_pred EECCCCcCCcchh---hhhcCCCCEEECcCCcccccc-----CCCCcCEEECCCCccC-CcCcc---ccCCCCEEECCCC
Confidence 4444444442221 344444555555544444211 1144555555555444 22221 1334555555555
Q ss_pred ccccccCccccCCCCCCEEeccCCcCccccchhhhhCCCCCcEEEeecCCCCCcccccccCCCCCCEEeccCCcCCccch
Q 042011 189 ALDGSIPSSFGNMNFLRVLDLSNNQLTGEIPEHLAVGCVNLESLALSNNSLEGHMFSRNFNLTNLEWLQLGGNRFVGEIP 268 (361)
Q Consensus 189 ~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 268 (361)
.+++..+..+..+++|++|++++|.+.+..+..++..+++|++|++++|.+++. + ....+++|+.|++++|++++ +|
T Consensus 131 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~-l~ 207 (317)
T 3o53_A 131 KITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAF-MG 207 (317)
T ss_dssp CCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCE-EC
T ss_pred CCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCc-ch
Confidence 554433444444455555555555554222333322344555555555555442 1 11234455555555555542 22
Q ss_pred hhhhcCCCCCEEECcCCcccccCCCCCCCcCcceeecccccccc
Q 042011 269 QSLSKCSSLEGLYLNNNSLSGNVNVPSSPANTLFNLSQNSRRFT 312 (361)
Q Consensus 269 ~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~L~~l~l~~N~~~ 312 (361)
..+..+++|+.|++++|++++ +|..+..+++|+.|++++|+++
T Consensus 208 ~~~~~l~~L~~L~L~~N~l~~-l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 208 PEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp GGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCCB
T ss_pred hhhcccCcccEEECcCCcccc-hhhHhhcCCCCCEEEccCCCcc
Confidence 234445555555555555542 3444444555555555555554
No 65
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.96 E-value=9.3e-30 Score=226.72 Aligned_cols=254 Identities=19% Similarity=0.124 Sum_probs=199.7
Q ss_pred hhccCCCCeEeCcCCcccccCCcccccCCCCCcEEEccCCCcccc-cccccc----cccCcccccEEeccCCCCCCCCCc
Q 042011 23 LVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFYADNNELNAE-ITQSHS----LIAPNFQLNSLSLSSDYGDGFIFP 97 (361)
Q Consensus 23 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~----~~~~~~~L~~L~l~~~~~~~~~~~ 97 (361)
++..++|+++++++|.+ .+|. .+... |+.|++++|.+... .+.... .+..+.+|++|++ ++|.+++..|
T Consensus 39 ~~~~~~L~~l~l~~n~l--~~p~-~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L-~~n~l~~~~~ 112 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE--ADLG-QFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTL-ENLEVTGTAP 112 (312)
T ss_dssp EEEEEECTTHHHHCCTT--CCCH-HHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEE-EEEBCBSCCC
T ss_pred EccCCCceeEeeccccc--ccHH-HHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEc-cCCcccchhH
Confidence 45667889999999988 5663 34333 88889998888532 222110 0114668999999 8888887777
Q ss_pred hhh--cCCCCccEEEecCCcccCCcChHHHhcC-----CCCcEEEecCCcccCCCCCCcCCCCCcCEEEccCCcCCcc--
Q 042011 98 KFL--YHQHDLALVDLSHIKMNGEFPTWLLENN-----TKLETLFLVNDSLTGPFRLPIHSHRWLEFLDISNNNFRCH-- 168 (361)
Q Consensus 98 ~~l--~~l~~L~~L~l~~n~l~~~~~~~~~~~~-----~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-- 168 (361)
..+ ..+++|++|++++|.+++. |.. +..+ ++|++|++++|++.+..+..+..+++|++|++++|++.+.
T Consensus 113 ~~~~~~~l~~L~~L~Ls~N~l~~~-~~~-~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 190 (312)
T 1wwl_A 113 PPLLEATGPDLNILNLRNVSWATR-DAW-LAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERG 190 (312)
T ss_dssp CCSSSCCSCCCSEEEEESCBCSSS-SSH-HHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHH
T ss_pred HHHHHhcCCCccEEEccCCCCcch-hHH-HHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchH
Confidence 765 8899999999999999855 655 6666 8999999999999988889999999999999999998744
Q ss_pred CChhh-hccCCCccEEEecCCcccc---ccCccccCCCCCCEEeccCCcCccccchhhhhCCCCCcEEEeecCCCCCccc
Q 042011 169 IPVEI-GDILPSLKFFNISMNALDG---SIPSSFGNMNFLRVLDLSNNQLTGEIPEHLAVGCVNLESLALSNNSLEGHMF 244 (361)
Q Consensus 169 ~~~~~-~~~l~~L~~L~L~~n~l~~---~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 244 (361)
++..+ +..+++|++|++++|.+++ .....+..+++|++|++++|.+++..|...+..+++|++|++++|+++. +|
T Consensus 191 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~-ip 269 (312)
T 1wwl_A 191 LISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ-VP 269 (312)
T ss_dssp HHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSS-CC
T ss_pred HHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccCh-hh
Confidence 23333 2458999999999999983 2224456789999999999999965654444468999999999999985 56
Q ss_pred ccccCCCCCCEEeccCCcCCccchhhhhcCCCCCEEECcCCcccc
Q 042011 245 SRNFNLTNLEWLQLGGNRFVGEIPQSLSKCSSLEGLYLNNNSLSG 289 (361)
Q Consensus 245 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 289 (361)
..+. ++|+.|++++|++++. |. +..+++|++|++++|++++
T Consensus 270 ~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 270 KGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp SSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred hhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 5554 8999999999999965 65 8899999999999999986
No 66
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.96 E-value=2.6e-27 Score=206.57 Aligned_cols=214 Identities=21% Similarity=0.212 Sum_probs=184.8
Q ss_pred CCccEEEecCCcccCCcChHHHhcCCCCcEEEecCCcccCCCCCCcCCCCCcCEEEccCCcCCccCChhhhccCCCccEE
Q 042011 104 HDLALVDLSHIKMNGEFPTWLLENNTKLETLFLVNDSLTGPFRLPIHSHRWLEFLDISNNNFRCHIPVEIGDILPSLKFF 183 (361)
Q Consensus 104 ~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 183 (361)
...++++++++.++ .+|..+ .+.+++|++++|++.+..+..|..+++|++|++++|+++ .++...+..+++|++|
T Consensus 16 ~~~~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L 90 (270)
T 2o6q_A 16 NNKNSVDCSSKKLT-AIPSNI---PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETL 90 (270)
T ss_dssp TTTTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTCCEE
T ss_pred CCCCEEEccCCCCC-ccCCCC---CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeChhhhcCCCCCCEE
Confidence 35788999999988 677642 367999999999998877778999999999999999998 7888877778999999
Q ss_pred EecCCccccccCccccCCCCCCEEeccCCcCccccchhhhhCCCCCcEEEeecCCCCCcccccccCCCCCCEEeccCCcC
Q 042011 184 NISMNALDGSIPSSFGNMNFLRVLDLSNNQLTGEIPEHLAVGCVNLESLALSNNSLEGHMFSRNFNLTNLEWLQLGGNRF 263 (361)
Q Consensus 184 ~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l 263 (361)
++++|.+++..+..|..+++|++|++++|.++ .++...+..+++|++|++++|.+++..+..+..+++|+.|++++|++
T Consensus 91 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 169 (270)
T 2o6q_A 91 WVTDNKLQALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQL 169 (270)
T ss_dssp ECCSSCCCCCCTTTTTTCSSCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred ECCCCcCCcCCHhHcccccCCCEEECCCCccC-eeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcC
Confidence 99999998766777889999999999999998 66666556899999999999999987777789999999999999999
Q ss_pred CccchhhhhcCCCCCEEECcCCcccccCCCCCCCcCcceeeccccccccCCcc-ccccccc
Q 042011 264 VGEIPQSLSKCSSLEGLYLNNNSLSGNVNVPSSPANTLFNLSQNSRRFTSSIS-HSHLLNL 323 (361)
Q Consensus 264 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~~-~~~~~~~ 323 (361)
++..+..|..+++|+.|++++|++++..+..+..+++|+.|++++|++.|.++ ..++..|
T Consensus 170 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~~~ 230 (270)
T 2o6q_A 170 KRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNGIIYMAKW 230 (270)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSSSSHHHHHH
T ss_pred cEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCccHHHHHHH
Confidence 98777789999999999999999998777788999999999999999999886 3344433
No 67
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.95 E-value=2.1e-27 Score=209.06 Aligned_cols=214 Identities=21% Similarity=0.174 Sum_probs=178.7
Q ss_pred hcCCCCccEEEecCCcccCCcChHHHhcCCCCcEEEecCCcccCCCCCCcCCCCCcCEEEccCCcCCccCChhhhccCCC
Q 042011 100 LYHQHDLALVDLSHIKMNGEFPTWLLENNTKLETLFLVNDSLTGPFRLPIHSHRWLEFLDISNNNFRCHIPVEIGDILPS 179 (361)
Q Consensus 100 l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 179 (361)
+..++++++++++++.++ .+|..+ .+.+++|++++|.+.+..+..+..+++|++|++++|.++ .++.. ..+++
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~---~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~--~~l~~ 78 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD--GTLPV 78 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEECC--SCCTT
T ss_pred ccccCCccEEECCCCCCC-cCCCCC---CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC-cccCC--CCCCc
Confidence 567788888888888887 677553 367888999999888777788888899999999999887 55543 34789
Q ss_pred ccEEEecCCccccccCccccCCCCCCEEeccCCcCccccchhhhhCCCCCcEEEeecCCCCCcccccccCCCCCCEEecc
Q 042011 180 LKFFNISMNALDGSIPSSFGNMNFLRVLDLSNNQLTGEIPEHLAVGCVNLESLALSNNSLEGHMFSRNFNLTNLEWLQLG 259 (361)
Q Consensus 180 L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~ 259 (361)
|++|++++|.++ .+|..+..+++|++|++++|.++ .++...+..+++|++|++++|++++..+..+..+++|+.|+++
T Consensus 79 L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 156 (290)
T 1p9a_G 79 LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA 156 (290)
T ss_dssp CCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCC-CCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCc-ccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECC
Confidence 999999999998 77778888999999999999998 6665555688999999999999998777788889999999999
Q ss_pred CCcCCccchhhhhcCCCCCEEECcCCcccccCCCCCCCcCcceeeccccccccCCccccccccc
Q 042011 260 GNRFVGEIPQSLSKCSSLEGLYLNNNSLSGNVNVPSSPANTLFNLSQNSRRFTSSISHSHLLNL 323 (361)
Q Consensus 260 ~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~~~~~~~~~ 323 (361)
+|++++..+..|..+++|+.|++++|+++ .+|..+....+|+.+++.+|+|.|.+...++..|
T Consensus 157 ~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~c~~~~l~~w 219 (290)
T 1p9a_G 157 NNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCEILYFRRW 219 (290)
T ss_dssp TSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSGGGHHHHHH
T ss_pred CCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCcCccHHHHHH
Confidence 99999766677888999999999999998 5677777788999999999999998876666555
No 68
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.95 E-value=7.6e-27 Score=204.27 Aligned_cols=216 Identities=19% Similarity=0.167 Sum_probs=169.6
Q ss_pred CCccEEEecCCcccCCcChHHHhcCCCCcEEEecCCcccCCCCCCcCCCCCcCEEEccCCcCCccCChhhhccCCCccEE
Q 042011 104 HDLALVDLSHIKMNGEFPTWLLENNTKLETLFLVNDSLTGPFRLPIHSHRWLEFLDISNNNFRCHIPVEIGDILPSLKFF 183 (361)
Q Consensus 104 ~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 183 (361)
+.+++|++++|.++ .++...+.++++|++|++++|++.+..+..+..+++|++|++++|+++ .++...+..+++|++|
T Consensus 28 ~~l~~L~ls~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L 105 (276)
T 2z62_A 28 FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKL 105 (276)
T ss_dssp TTCCEEECTTCCCC-EECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEE
T ss_pred CCccEEECCCCccc-ccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccC-ccChhhhcCCccccEE
Confidence 46888888888887 444433777888888888888887766777888888888888888887 4554444458888999
Q ss_pred EecCCccccccCccccCCCCCCEEeccCCcCcc-ccchhhhhCCCCCcEEEeecCCCCCcccccccCCCCCC----EEec
Q 042011 184 NISMNALDGSIPSSFGNMNFLRVLDLSNNQLTG-EIPEHLAVGCVNLESLALSNNSLEGHMFSRNFNLTNLE----WLQL 258 (361)
Q Consensus 184 ~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~----~L~L 258 (361)
++++|.+.+..+..+..+++|++|++++|.+.+ .+|..+. .+++|++|++++|++++..+..+..+++|+ .|++
T Consensus 106 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~l 184 (276)
T 2z62_A 106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS-NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 184 (276)
T ss_dssp ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGG-GCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEEC
T ss_pred ECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhc-cCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeec
Confidence 998888886666678888899999999998873 2466554 788999999999999887777776666666 8999
Q ss_pred cCCcCCccchhhhhcCCCCCEEECcCCcccccCCCCCCCcCcceeeccccccccCCccc-cccccc
Q 042011 259 GGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGNVNVPSSPANTLFNLSQNSRRFTSSISH-SHLLNL 323 (361)
Q Consensus 259 ~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~~~-~~~~~~ 323 (361)
++|++++..+..+ ...+|+.|++++|++++..+..+..+++|++|++++|+++|.++. .++..|
T Consensus 185 s~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l~~l~~~ 249 (276)
T 2z62_A 185 SLNPMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRW 249 (276)
T ss_dssp CSSCCCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTTHHHHHH
T ss_pred CCCcccccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCchHHHHHH
Confidence 9999996555555 445899999999999987777788999999999999999998873 344444
No 69
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.95 E-value=6.2e-26 Score=218.44 Aligned_cols=244 Identities=23% Similarity=0.221 Sum_probs=206.3
Q ss_pred CCCCeEeCCCccccCcCChhhhhccCCCCeEeCcCCcccccCCcccccCCCCCcEEEccCCCcccccccccccccCcccc
Q 042011 2 TSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLIAPNFQL 81 (361)
Q Consensus 2 ~~L~~L~L~~n~i~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L 81 (361)
++|++|++++|+++ .+|. .+++|++|+|++|+++ .+|. .+++|++|++++|.+++... ...+|
T Consensus 61 ~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~-~lp~----~l~~L~~L~Ls~N~l~~l~~-------~l~~L 123 (622)
T 3g06_A 61 AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLT-SLPV----LPPGLLELSIFSNPLTHLPA-------LPSGL 123 (622)
T ss_dssp TTCSEEEECSCCCS-CCCC----CCTTCCEEEECSCCCS-CCCC----CCTTCCEEEECSCCCCCCCC-------CCTTC
T ss_pred CCCcEEEecCCCCC-CCCC----cCCCCCEEEcCCCcCC-cCCC----CCCCCCEEECcCCcCCCCCC-------CCCCc
Confidence 57999999999998 8887 5799999999999998 6773 78999999999999986432 33589
Q ss_pred cEEeccCCCCCCCCCchhhcCCCCccEEEecCCcccCCcChHHHhcCCCCcEEEecCCcccCCCCCCcCCCCCcCEEEcc
Q 042011 82 NSLSLSSDYGDGFIFPKFLYHQHDLALVDLSHIKMNGEFPTWLLENNTKLETLFLVNDSLTGPFRLPIHSHRWLEFLDIS 161 (361)
Q Consensus 82 ~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 161 (361)
++|++ ++|.++.. |.. +++|++|++++|.++ .+|. ..++|+.|++++|.+++ +| ..+++|+.|+++
T Consensus 124 ~~L~L-~~N~l~~l-p~~---l~~L~~L~Ls~N~l~-~l~~----~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls 189 (622)
T 3g06_A 124 CKLWI-FGNQLTSL-PVL---PPGLQELSVSDNQLA-SLPA----LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVS 189 (622)
T ss_dssp CEEEC-CSSCCSCC-CCC---CTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECC
T ss_pred CEEEC-CCCCCCcC-CCC---CCCCCEEECcCCcCC-CcCC----ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECC
Confidence 99999 88988864 432 489999999999998 5654 35789999999999986 44 456889999999
Q ss_pred CCcCCccCChhhhccCCCccEEEecCCccccccCccccCCCCCCEEeccCCcCccccchhhhhCCCCCcEEEeecCCCCC
Q 042011 162 NNNFRCHIPVEIGDILPSLKFFNISMNALDGSIPSSFGNMNFLRVLDLSNNQLTGEIPEHLAVGCVNLESLALSNNSLEG 241 (361)
Q Consensus 162 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~ 241 (361)
+|.++ .+|.. +++|+.|++++|.++ .+|.. +++|++|++++|.++ .+| ..+++|+.|++++|+++.
T Consensus 190 ~N~l~-~l~~~----~~~L~~L~L~~N~l~-~l~~~---~~~L~~L~Ls~N~L~-~lp----~~l~~L~~L~Ls~N~L~~ 255 (622)
T 3g06_A 190 DNQLA-SLPTL----PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLT-SLP----VLPSELKELMVSGNRLTS 255 (622)
T ss_dssp SSCCS-CCCCC----CTTCCEEECCSSCCS-SCCCC---CTTCCEEECCSSCCS-CCC----CCCTTCCEEECCSSCCSC
T ss_pred CCCCC-CCCCc----cchhhEEECcCCccc-ccCCC---CCCCCEEEccCCccC-cCC----CCCCcCcEEECCCCCCCc
Confidence 99998 66643 579999999999998 55543 488999999999999 677 267899999999999997
Q ss_pred cccccccCCCCCCEEeccCCcCCccchhhhhcCCCCCEEECcCCcccccCCCCC
Q 042011 242 HMFSRNFNLTNLEWLQLGGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGNVNVPS 295 (361)
Q Consensus 242 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~ 295 (361)
. |. .+++|+.|++++|+++ .+|..+..+++|+.|++++|.+++..|..+
T Consensus 256 l-p~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l 304 (622)
T 3g06_A 256 L-PM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL 304 (622)
T ss_dssp C-CC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHH
T ss_pred C-Cc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHH
Confidence 4 43 6789999999999999 678899999999999999999998766544
No 70
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.95 E-value=2.1e-27 Score=223.96 Aligned_cols=234 Identities=19% Similarity=0.219 Sum_probs=110.5
Q ss_pred CCcEEEccCCCcccccccccccccCcccccEEeccCCCCCCCCCchhhcCCCCccEEEecCCcccCCcChHHHhcCCCCc
Q 042011 53 RLKIFYADNNELNAEITQSHSLIAPNFQLNSLSLSSDYGDGFIFPKFLYHQHDLALVDLSHIKMNGEFPTWLLENNTKLE 132 (361)
Q Consensus 53 ~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~ 132 (361)
+|++|++++|.+++..+.. +..+.+|++|++ ++|.+++..+ +..+++|++|++++|.++ .++ ..++|+
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~---~~~l~~L~~L~L-s~N~l~~~~~--l~~l~~L~~L~Ls~N~l~-~l~-----~~~~L~ 102 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAAD---LAPFTKLELLNL-SSNVLYETLD--LESLSTLRTLDLNNNYVQ-ELL-----VGPSIE 102 (487)
T ss_dssp GCCEEECCSSCCCCCCGGG---GTTCTTCCEEEC-TTSCCEEEEE--CTTCTTCCEEECCSSEEE-EEE-----ECTTCC
T ss_pred CccEEEeeCCcCCCCCHHH---HhCCCCCCEEEe-eCCCCCCCcc--cccCCCCCEEEecCCcCC-CCC-----CCCCcC
Confidence 5666666666655443332 334445555555 5555543333 455555555555555554 222 124555
Q ss_pred EEEecCCcccCCCCCCcCCCCCcCEEEccCCcCCccCChhhhccCCCccEEEecCCccccccCcccc-CCCCCCEEeccC
Q 042011 133 TLFLVNDSLTGPFRLPIHSHRWLEFLDISNNNFRCHIPVEIGDILPSLKFFNISMNALDGSIPSSFG-NMNFLRVLDLSN 211 (361)
Q Consensus 133 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~-~~~~L~~L~l~~ 211 (361)
+|++++|.+.+..+. .+++|+.|++++|.+++..|..+. .+++|+.|++++|.+++..|..+. .+++|++|++++
T Consensus 103 ~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~ 178 (487)
T 3oja_A 103 TLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEG-CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178 (487)
T ss_dssp EEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGG-GGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTT
T ss_pred EEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhc-CCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCC
Confidence 555555555443322 224455555555555422222222 245555555555555544444443 445555555555
Q ss_pred CcCccccchhhhhCCCCCcEEEeecCCCCCcccccccCCCCCCEEeccCCcCCccchhhhhcCCCCCEEECcCCccc-cc
Q 042011 212 NQLTGEIPEHLAVGCVNLESLALSNNSLEGHMFSRNFNLTNLEWLQLGGNRFVGEIPQSLSKCSSLEGLYLNNNSLS-GN 290 (361)
Q Consensus 212 n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~ 290 (361)
|.++ .++... .+++|+.|++++|.+++..+ .+..+++|+.|++++|.+++ +|..+..+++|+.|++++|.+. +.
T Consensus 179 N~l~-~~~~~~--~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~ 253 (487)
T 3oja_A 179 NFIY-DVKGQV--VFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGT 253 (487)
T ss_dssp SCCC-EEECCC--CCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHH
T ss_pred Cccc-cccccc--cCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcc
Confidence 5554 233222 24555555555555554222 24445555555555555552 3444444555555555555554 33
Q ss_pred CCCCCCCcCcceeeccc
Q 042011 291 VNVPSSPANTLFNLSQN 307 (361)
Q Consensus 291 ~~~~~~~~~~L~~l~l~ 307 (361)
+|..+..++.++.+++.
T Consensus 254 ~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 254 LRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp HHHHHTTCHHHHHHHHH
T ss_pred hHHHHHhCCCCcEEecc
Confidence 33444444455544443
No 71
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.95 E-value=1.6e-27 Score=224.76 Aligned_cols=236 Identities=19% Similarity=0.222 Sum_probs=196.7
Q ss_pred CCCCeEeCcCCcccccCCcccccCCCCCcEEEccCCCcccccccccccccCcccccEEeccCCCCCCCCCchhhcCCCCc
Q 042011 27 TSIEELMLSNNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLIAPNFQLNSLSLSSDYGDGFIFPKFLYHQHDL 106 (361)
Q Consensus 27 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L 106 (361)
++|++|+|++|.+++ ++...|..+++|++|++++|.+++..+ +..+.+|++|++ ++|.+++.. ..++|
T Consensus 34 ~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~-----l~~l~~L~~L~L-s~N~l~~l~-----~~~~L 101 (487)
T 3oja_A 34 WNVKELDLSGNPLSQ-ISAADLAPFTKLELLNLSSNVLYETLD-----LESLSTLRTLDL-NNNYVQELL-----VGPSI 101 (487)
T ss_dssp GGCCEEECCSSCCCC-CCGGGGTTCTTCCEEECTTSCCEEEEE-----CTTCTTCCEEEC-CSSEEEEEE-----ECTTC
T ss_pred CCccEEEeeCCcCCC-CCHHHHhCCCCCCEEEeeCCCCCCCcc-----cccCCCCCEEEe-cCCcCCCCC-----CCCCc
Confidence 489999999999984 444678899999999999998876543 456678999999 888776433 34899
Q ss_pred cEEEecCCcccCCcChHHHhcCCCCcEEEecCCcccCCCCCCcCCCCCcCEEEccCCcCCccCChhhhccCCCccEEEec
Q 042011 107 ALVDLSHIKMNGEFPTWLLENNTKLETLFLVNDSLTGPFRLPIHSHRWLEFLDISNNNFRCHIPVEIGDILPSLKFFNIS 186 (361)
Q Consensus 107 ~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~ 186 (361)
++|++++|.+++ ++. ..+++|++|++++|.+++..|..+..+++|+.|++++|.+++..|..+...+++|++|+++
T Consensus 102 ~~L~L~~N~l~~-~~~---~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls 177 (487)
T 3oja_A 102 ETLHAANNNISR-VSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ 177 (487)
T ss_dssp CEEECCSSCCCC-EEE---CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECT
T ss_pred CEEECcCCcCCC-CCc---cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecC
Confidence 999999999984 443 2468999999999999988888899999999999999999966777776558999999999
Q ss_pred CCccccccCccccCCCCCCEEeccCCcCccccchhhhhCCCCCcEEEeecCCCCCcccccccCCCCCCEEeccCCcCC-c
Q 042011 187 MNALDGSIPSSFGNMNFLRVLDLSNNQLTGEIPEHLAVGCVNLESLALSNNSLEGHMFSRNFNLTNLEWLQLGGNRFV-G 265 (361)
Q Consensus 187 ~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~-~ 265 (361)
+|.+++. +. ...+++|++|++++|.++ .+|..+. .+++|+.|++++|.+++ +|..+..+++|+.|++++|++. +
T Consensus 178 ~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~-~~~~~~~-~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~ 252 (487)
T 3oja_A 178 YNFIYDV-KG-QVVFAKLKTLDLSSNKLA-FMGPEFQ-SAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCG 252 (487)
T ss_dssp TSCCCEE-EC-CCCCTTCCEEECCSSCCC-EECGGGG-GGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHH
T ss_pred CCccccc-cc-cccCCCCCEEECCCCCCC-CCCHhHc-CCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCc
Confidence 9999855 32 446899999999999999 6766655 79999999999999997 5777889999999999999998 5
Q ss_pred cchhhhhcCCCCCEEECc
Q 042011 266 EIPQSLSKCSSLEGLYLN 283 (361)
Q Consensus 266 ~~~~~~~~l~~L~~L~l~ 283 (361)
.+|..+..++.|+.++++
T Consensus 253 ~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 253 TLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp HHHHHHTTCHHHHHHHHH
T ss_pred chHHHHHhCCCCcEEecc
Confidence 677888888888888886
No 72
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.94 E-value=1.4e-25 Score=196.13 Aligned_cols=223 Identities=17% Similarity=0.182 Sum_probs=175.0
Q ss_pred eEeCCCccccCcCChhhhhccCCCCeEeCcCCcccccCCcccccCCCCCcEEEccCCCcccccccccccccCcccccEEe
Q 042011 6 ILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLIAPNFQLNSLS 85 (361)
Q Consensus 6 ~L~L~~n~i~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~ 85 (361)
.++-++.+++ .+|. .+ .++|++|++++|+++ .++...|.++++|++|++++|.+++..+.. +..+.+|++|+
T Consensus 11 ~~~c~~~~l~-~ip~-~l--~~~l~~L~ls~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~---~~~l~~L~~L~ 82 (276)
T 2z62_A 11 TYQCMELNFY-KIPD-NL--PFSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGA---YQSLSHLSTLI 82 (276)
T ss_dssp EEECTTSCCS-SCCS-SS--CTTCCEEECTTCCCC-EECTTTTTTCTTCSEEECTTCCCCEECTTT---TTTCTTCCEEE
T ss_pred eEEecCCCcc-ccCC-CC--CCCccEEECCCCccc-ccCHhHhccccCCcEEECCCCcCCccCHHH---ccCCcCCCEEE
Confidence 4566666776 7776 33 257999999999998 455457888999999999999888665544 55667899999
Q ss_pred ccCCCCCCCCCchhhcCCCCccEEEecCCcccCCcChHHHhcCCCCcEEEecCCcccCC-CCCCcCCCCCcCEEEccCCc
Q 042011 86 LSSDYGDGFIFPKFLYHQHDLALVDLSHIKMNGEFPTWLLENNTKLETLFLVNDSLTGP-FRLPIHSHRWLEFLDISNNN 164 (361)
Q Consensus 86 l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~ 164 (361)
+ ++|.+....+..+..+++|++|++++|.+.+ ++...+..+++|++|++++|.+.+. .|..+..+++|++|++++|+
T Consensus 83 L-~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~ 160 (276)
T 2z62_A 83 L-TGNPIQSLALGAFSGLSSLQKLVAVETNLAS-LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 160 (276)
T ss_dssp C-TTCCCCEECTTTTTTCTTCCEEECTTSCCCC-STTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred C-CCCccCccChhhhcCCccccEEECCCCCccc-cCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCC
Confidence 9 8888888777888999999999999999884 4443378889999999999998864 57888999999999999999
Q ss_pred CCccCChhhhccCCCcc----EEEecCCccccccCccccCCCCCCEEeccCCcCccccchhhhhCCCCCcEEEeecCCCC
Q 042011 165 FRCHIPVEIGDILPSLK----FFNISMNALDGSIPSSFGNMNFLRVLDLSNNQLTGEIPEHLAVGCVNLESLALSNNSLE 240 (361)
Q Consensus 165 l~~~~~~~~~~~l~~L~----~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~ 240 (361)
++ .++...+..+++|+ .|++++|.+++..+..+ ...+|++|++++|.++ .+|...+..+++|+.|++++|.+.
T Consensus 161 l~-~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 161 IQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp CC-EECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSS-CSCCEEEEECCSSCCS-CCCTTTTTTCCSCCEEECCSSCBC
T ss_pred CC-cCCHHHhhhhhhccccceeeecCCCcccccCcccc-CCCcccEEECCCCcee-ecCHhHhcccccccEEEccCCccc
Confidence 98 45443333355665 89999999985544444 4458999999999998 777776668999999999999887
Q ss_pred C
Q 042011 241 G 241 (361)
Q Consensus 241 ~ 241 (361)
.
T Consensus 238 c 238 (276)
T 2z62_A 238 C 238 (276)
T ss_dssp C
T ss_pred c
Confidence 5
No 73
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.93 E-value=8.8e-25 Score=190.47 Aligned_cols=183 Identities=25% Similarity=0.283 Sum_probs=120.5
Q ss_pred CCccEEEecCCcccCCcChHHHhcCCCCcEEEecCCcccCCCCCCcCCCCCcCEEEccCCcCCccCChhhhccCCCccEE
Q 042011 104 HDLALVDLSHIKMNGEFPTWLLENNTKLETLFLVNDSLTGPFRLPIHSHRWLEFLDISNNNFRCHIPVEIGDILPSLKFF 183 (361)
Q Consensus 104 ~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 183 (361)
+.+++|++++|.++ .++...+.++++|++|++++|.++...+..|..+++|++|++++|+++ .++...+..+++|++|
T Consensus 37 ~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L 114 (270)
T 2o6q_A 37 ADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAEL 114 (270)
T ss_dssp TTCSEEECCSSCCS-CCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCC-CCCTTTTTTCSSCCEE
T ss_pred CCCCEEECcCCCCC-eeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCC-cCCHhHcccccCCCEE
Confidence 35566666666665 333323556666666666666666544455566666666666666666 5555554456677777
Q ss_pred EecCCccccccCccccCCCCCCEEeccCCcCccccchhhhhCCCCCcEEEeecCCCCCcccccccCCCCCCEEeccCCcC
Q 042011 184 NISMNALDGSIPSSFGNMNFLRVLDLSNNQLTGEIPEHLAVGCVNLESLALSNNSLEGHMFSRNFNLTNLEWLQLGGNRF 263 (361)
Q Consensus 184 ~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l 263 (361)
++++|.+++..+..|..+++|++|++++|.++ .+|...+..+++|++|++++|++++..+..+..+++|+.|++++|++
T Consensus 115 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 193 (270)
T 2o6q_A 115 RLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQL 193 (270)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCC
T ss_pred ECCCCccCeeCHHHhCcCcCCCEEECCCCcCC-ccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcC
Confidence 77777776555556667777777777777776 55555444677777777777777776666677777777777777777
Q ss_pred CccchhhhhcCCCCCEEECcCCcccc
Q 042011 264 VGEIPQSLSKCSSLEGLYLNNNSLSG 289 (361)
Q Consensus 264 ~~~~~~~~~~l~~L~~L~l~~N~l~~ 289 (361)
++..+..|..+++|+.|++++|.+..
T Consensus 194 ~~~~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 194 KRVPEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CcCCHHHhccccCCCEEEecCCCeeC
Confidence 76555667777777777777777754
No 74
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.93 E-value=3e-25 Score=193.62 Aligned_cols=204 Identities=20% Similarity=0.223 Sum_probs=134.4
Q ss_pred hcCCCCccEEEecCCcccCCcChHHHhcCCCCcEEEecCCcccCCCCCCcCCCCCcCEEEccCCcCCccCChhhhccCCC
Q 042011 100 LYHQHDLALVDLSHIKMNGEFPTWLLENNTKLETLFLVNDSLTGPFRLPIHSHRWLEFLDISNNNFRCHIPVEIGDILPS 179 (361)
Q Consensus 100 l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 179 (361)
...+++|+.|++++|.++ .++. +..+++|++|++++|.+.+. ..+..+++|++|++++|.++ .++...+..+++
T Consensus 37 ~~~l~~L~~L~l~~~~i~-~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~ 110 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIK-SVQG--IQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQ-SLPNGVFDKLTN 110 (272)
T ss_dssp HHHHTTCCEEECTTSCCC-CCTT--GGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCC-CCCTTTTTTCTT
T ss_pred cccccceeeeeeCCCCcc-cccc--cccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccC-ccChhHhcCCcC
Confidence 445666667777766665 4433 45666777777777766642 35666667777777777776 455444444667
Q ss_pred ccEEEecCCccccccCccccCCCCCCEEeccCCcCccccchhhhhCCCCCcEEEeecCCCCCcccccccCCCCCCEEecc
Q 042011 180 LKFFNISMNALDGSIPSSFGNMNFLRVLDLSNNQLTGEIPEHLAVGCVNLESLALSNNSLEGHMFSRNFNLTNLEWLQLG 259 (361)
Q Consensus 180 L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~ 259 (361)
|++|++++|.+++..+..+..+++|++|++++|.++ .++...+..+++|++|++++|++++..+..+..+++|+.|+++
T Consensus 111 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 189 (272)
T 3rfs_A 111 LKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLY 189 (272)
T ss_dssp CCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEECCCCcCCccCHHHhccCCCCCEEECCCCccC-ccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECC
Confidence 777777777776555555667777777777777776 5554444466777777777777776666666677777777777
Q ss_pred CCcCCccchhhhhcCCCCCEEECcCCcccccCCCCCCCcCcceeeccccccccCCccc
Q 042011 260 GNRFVGEIPQSLSKCSSLEGLYLNNNSLSGNVNVPSSPANTLFNLSQNSRRFTSSISH 317 (361)
Q Consensus 260 ~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~~~ 317 (361)
+|++++..+..+..+++|+.|++++|.+.+. ++.++.+++..|.++|.+|.
T Consensus 190 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~ 240 (272)
T 3rfs_A 190 QNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRN 240 (272)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBC
T ss_pred CCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccC
Confidence 7777766666667777777777777766532 34567777777777776664
No 75
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.93 E-value=7.3e-26 Score=197.54 Aligned_cols=210 Identities=20% Similarity=0.248 Sum_probs=134.7
Q ss_pred cCCCCCcEEEccCCCcccccccccccccCcccccEEeccCCCCCCCCCchhhcCCCCccEEEecCCcccCCcChHHHhcC
Q 042011 49 FNHSRLKIFYADNNELNAEITQSHSLIAPNFQLNSLSLSSDYGDGFIFPKFLYHQHDLALVDLSHIKMNGEFPTWLLENN 128 (361)
Q Consensus 49 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 128 (361)
..+++|+.|++++|.+... ..+..+.+|++|++ ++|.+.+. ..+..+++|++|++++|.++ .++...+.++
T Consensus 38 ~~l~~L~~L~l~~~~i~~~-----~~l~~l~~L~~L~l-~~n~l~~~--~~l~~l~~L~~L~L~~n~l~-~~~~~~~~~l 108 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKSV-----QGIQYLPNVRYLAL-GGNKLHDI--SALKELTNLTYLILTGNQLQ-SLPNGVFDKL 108 (272)
T ss_dssp HHHTTCCEEECTTSCCCCC-----TTGGGCTTCCEEEC-TTSCCCCC--GGGTTCTTCCEEECTTSCCC-CCCTTTTTTC
T ss_pred ccccceeeeeeCCCCcccc-----cccccCCCCcEEEC-CCCCCCCc--hhhcCCCCCCEEECCCCccC-ccChhHhcCC
Confidence 3444444555544444321 11233334555555 44444432 24566777777777777776 3444336677
Q ss_pred CCCcEEEecCCcccCCCCCCcCCCCCcCEEEccCCcCCccCChhhhccCCCccEEEecCCccccccCccccCCCCCCEEe
Q 042011 129 TKLETLFLVNDSLTGPFRLPIHSHRWLEFLDISNNNFRCHIPVEIGDILPSLKFFNISMNALDGSIPSSFGNMNFLRVLD 208 (361)
Q Consensus 129 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~ 208 (361)
++|++|++++|++.+..+..+..+++|++|++++|+++ .++...+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 109 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 187 (272)
T 3rfs_A 109 TNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLR 187 (272)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccC-ccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEE
Confidence 77777777777777666666777777777777777777 55555544477777888877777766666667777888888
Q ss_pred ccCCcCccccchhhhhCCCCCcEEEeecCCCCCcccccccCCCCCCEEeccCCcCCccchhhhhcCCC
Q 042011 209 LSNNQLTGEIPEHLAVGCVNLESLALSNNSLEGHMFSRNFNLTNLEWLQLGGNRFVGEIPQSLSKCSS 276 (361)
Q Consensus 209 l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~ 276 (361)
+++|.++ .++...+..+++|+.|++++|.+.+ .+++|+.++++.|.+++.+|..++.++.
T Consensus 188 L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 188 LYQNQLK-SVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp CCSSCCS-CCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred CCCCcCC-ccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCCcccCcccccCC
Confidence 8888777 4444444467788888888877653 3567778888888888777777665543
No 76
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.92 E-value=4.9e-26 Score=206.87 Aligned_cols=260 Identities=16% Similarity=0.137 Sum_probs=130.2
Q ss_pred eEeCCCccccCcCChhhhhccCCCCeEeCcCCcccccCCc----ccccCCC-CCcEEEccCCCcccccccccccc-cC-c
Q 042011 6 ILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISL----EPLFNHS-RLKIFYADNNELNAEITQSHSLI-AP-N 78 (361)
Q Consensus 6 ~L~L~~n~i~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~~-~~-~ 78 (361)
.+++++|.+++.+|. .+...++|++|+|++|.++ ..+. ..+..++ +|++|++++|.+++..+..+... .. .
T Consensus 2 ~~~ls~n~~~~~~~~-~~~~~~~L~~L~Ls~n~l~-~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~ 79 (362)
T 3goz_A 2 NYKLTLHPGSNPVEE-FTSIPHGVTSLDLSLNNLY-SISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIP 79 (362)
T ss_dssp EEECCCCTTCCHHHH-HHTSCTTCCEEECTTSCGG-GSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSC
T ss_pred ccccccccchHHHHH-HHhCCCCceEEEccCCCCC-hHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccC
Confidence 467889999877776 5555566999999999987 4554 4677788 89999999998876443331111 00 0
Q ss_pred ccccEEeccCCCCCCCCCchhhc----CC-CCccEEEecCCcccCCcChHHHhcCCCCcEEEecCCcccCCCCCCcCC-C
Q 042011 79 FQLNSLSLSSDYGDGFIFPKFLY----HQ-HDLALVDLSHIKMNGEFPTWLLENNTKLETLFLVNDSLTGPFRLPIHS-H 152 (361)
Q Consensus 79 ~~L~~L~l~~~~~~~~~~~~~l~----~l-~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-l 152 (361)
.+|++|++ ++|.+++..+..+. .+ ++|++|++++|.+++..+..+ .. .+.. .
T Consensus 80 ~~L~~L~L-s~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l-~~--------------------~l~~~~ 137 (362)
T 3goz_A 80 ANVTSLNL-SGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEF-KQ--------------------AFSNLP 137 (362)
T ss_dssp TTCCEEEC-CSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH-HH--------------------HHTTSC
T ss_pred CCccEEEC-cCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHH-HH--------------------HHHhCC
Confidence 34555555 44444443333222 22 445555555555442222221 11 0111 1
Q ss_pred CCcCEEEccCCcCCccCChh----hhccCC-CccEEEecCCccccccCc----cccCC-CCCCEEeccCCcCccc----c
Q 042011 153 RWLEFLDISNNNFRCHIPVE----IGDILP-SLKFFNISMNALDGSIPS----SFGNM-NFLRVLDLSNNQLTGE----I 218 (361)
Q Consensus 153 ~~L~~L~l~~n~l~~~~~~~----~~~~l~-~L~~L~L~~n~l~~~~~~----~l~~~-~~L~~L~l~~n~l~~~----~ 218 (361)
++|++|++++|++++..... +.. .+ +|++|++++|.+++..+. .+..+ ++|++|++++|.+++. +
T Consensus 138 ~~L~~L~Ls~N~l~~~~~~~l~~~l~~-~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l 216 (362)
T 3goz_A 138 ASITSLNLRGNDLGIKSSDELIQILAA-IPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAEL 216 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHT-SCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHH
T ss_pred CceeEEEccCCcCCHHHHHHHHHHHhc-CCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHH
Confidence 34455555555444221111 111 22 555555555555433222 22233 3555555555555521 3
Q ss_pred chhhhhCCCCCcEEEeecCCCCCccc----ccccCCCCCCEEeccCCcCCcc-------chhhhhcCCCCCEEECcCCcc
Q 042011 219 PEHLAVGCVNLESLALSNNSLEGHMF----SRNFNLTNLEWLQLGGNRFVGE-------IPQSLSKCSSLEGLYLNNNSL 287 (361)
Q Consensus 219 ~~~~~~~~~~L~~L~L~~n~l~~~~~----~~~~~~~~L~~L~L~~n~l~~~-------~~~~~~~l~~L~~L~l~~N~l 287 (361)
+..+....++|++|++++|.+++..+ ..+..+++|+.|++++|.+.+. ++..+..+++|+.||+++|.+
T Consensus 217 ~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l 296 (362)
T 3goz_A 217 AYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEI 296 (362)
T ss_dssp HHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBC
T ss_pred HHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcC
Confidence 33333223455666666655554322 2234445566666666553322 122344455555566666655
Q ss_pred ccc
Q 042011 288 SGN 290 (361)
Q Consensus 288 ~~~ 290 (361)
.+.
T Consensus 297 ~~~ 299 (362)
T 3goz_A 297 HPS 299 (362)
T ss_dssp CGG
T ss_pred CCc
Confidence 543
No 77
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.92 E-value=4.8e-26 Score=208.81 Aligned_cols=260 Identities=20% Similarity=0.177 Sum_probs=168.3
Q ss_pred CCccccCcCChhhhhccCCCCeEeCcCCcccccCCc---ccccCCCCCcEEEccCCCcccccccccccccCcccccEEec
Q 042011 10 SSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISL---EPLFNHSRLKIFYADNNELNAEITQSHSLIAPNFQLNSLSL 86 (361)
Q Consensus 10 ~~n~i~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~---~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l 86 (361)
+...+. .++. .+..+++|++|+|++|++++..+. ..+..+++|++|++++|.+.......+..+.
T Consensus 17 ~~~~~~-~l~~-~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~---------- 84 (386)
T 2ca6_A 17 TTEDEK-SVFA-VLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALR---------- 84 (386)
T ss_dssp CSHHHH-TTSH-HHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHH----------
T ss_pred CHHHHH-HHHH-HHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHH----------
Confidence 333443 5666 788889999999999988743221 2366788899999988755321111000000
Q ss_pred cCCCCCCCCCchhhcCCCCccEEEecCCcccC----CcChHHHhcCCCCcEEEecCCcccCCCCCC----cCCC------
Q 042011 87 SSDYGDGFIFPKFLYHQHDLALVDLSHIKMNG----EFPTWLLENNTKLETLFLVNDSLTGPFRLP----IHSH------ 152 (361)
Q Consensus 87 ~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~----~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~----~~~l------ 152 (361)
.+...+..+++|++|++++|.++. .++.. +..+++|++|++++|.+....+.. +..+
T Consensus 85 --------~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~-l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~ 155 (386)
T 2ca6_A 85 --------LLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDF-LSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKA 155 (386)
T ss_dssp --------HHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHH-HHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------HHHHHHhhCCcccEEECCCCcCCHHHHHHHHHH-HHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhc
Confidence 011234566677777777776664 23333 566677777777777664322222 2222
Q ss_pred ---CCcCEEEccCCcCCc-cCCh--hhhccCCCccEEEecCCcccc-----ccCccccCCCCCCEEeccCCcCc----cc
Q 042011 153 ---RWLEFLDISNNNFRC-HIPV--EIGDILPSLKFFNISMNALDG-----SIPSSFGNMNFLRVLDLSNNQLT----GE 217 (361)
Q Consensus 153 ---~~L~~L~l~~n~l~~-~~~~--~~~~~l~~L~~L~L~~n~l~~-----~~~~~l~~~~~L~~L~l~~n~l~----~~ 217 (361)
++|++|++++|++++ .++. ..+..+++|++|++++|.++. ..+..+..+++|++|++++|.++ +.
T Consensus 156 ~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~ 235 (386)
T 2ca6_A 156 KNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSA 235 (386)
T ss_dssp HTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHH
T ss_pred ccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHH
Confidence 678888888888762 2331 122236788888888888762 23446778888888888888885 35
Q ss_pred cchhhhhCCCCCcEEEeecCCCCCc----cccccc--CCCCCCEEeccCCcCCc----cchhhh-hcCCCCCEEECcCCc
Q 042011 218 IPEHLAVGCVNLESLALSNNSLEGH----MFSRNF--NLTNLEWLQLGGNRFVG----EIPQSL-SKCSSLEGLYLNNNS 286 (361)
Q Consensus 218 ~~~~~~~~~~~L~~L~L~~n~l~~~----~~~~~~--~~~~L~~L~L~~n~l~~----~~~~~~-~~l~~L~~L~l~~N~ 286 (361)
+|..+. .+++|++|++++|.+++. .+..+. .+++|+.|++++|.+++ .+|..+ ..+++|+.|++++|.
T Consensus 236 l~~~l~-~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 236 LAIALK-SWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp HHHHGG-GCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred HHHHHc-cCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 666554 688888888888888764 344553 37889999999998886 366666 557889999999998
Q ss_pred ccccC
Q 042011 287 LSGNV 291 (361)
Q Consensus 287 l~~~~ 291 (361)
+++..
T Consensus 315 l~~~~ 319 (386)
T 2ca6_A 315 FSEED 319 (386)
T ss_dssp SCTTS
T ss_pred CCcch
Confidence 88655
No 78
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.92 E-value=1.5e-26 Score=223.89 Aligned_cols=305 Identities=16% Similarity=0.152 Sum_probs=197.0
Q ss_pred CCCCCeEeCCCccccCc----CChhhhhccCCCCeEeCcCCcccc----cCCcccccCCCCCcEEEccCCCccccccccc
Q 042011 1 MTSLRILDVSSNQLTGS----ISSSPLVHLTSIEELMLSNNHFQI----PISLEPLFNHSRLKIFYADNNELNAEITQSH 72 (361)
Q Consensus 1 l~~L~~L~L~~n~i~~~----i~~~~~~~l~~L~~L~Ls~n~l~~----~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 72 (361)
|++|++|+|++|.+++. ++. .+..+++|++|++++|.+++ .++ ..+.++++|++|++++|.+.+.. ..
T Consensus 163 ~~~L~~L~L~~~~~~~~~~~~l~~-~~~~~~~L~~L~L~~n~~~~~~~~~l~-~~~~~~~~L~~L~L~~~~~~~l~-~~- 238 (592)
T 3ogk_B 163 CRKIKTLLMEESSFSEKDGKWLHE-LAQHNTSLEVLNFYMTEFAKISPKDLE-TIARNCRSLVSVKVGDFEILELV-GF- 238 (592)
T ss_dssp CTTCSEEECTTCEEECCCSHHHHH-HHHHCCCCCEEECTTCCCSSCCHHHHH-HHHHHCTTCCEEECSSCBGGGGH-HH-
T ss_pred CCCCCEEECccccccCcchhHHHH-HHhcCCCccEEEeeccCCCccCHHHHH-HHHhhCCCCcEEeccCccHHHHH-HH-
Confidence 57899999999988744 333 56678999999999988861 222 23567889999999988776421 11
Q ss_pred ccccCcccccEEecc--------------------------CCCCCCCCCchhhcCCCCccEEEecCCcccCCcChHHHh
Q 042011 73 SLIAPNFQLNSLSLS--------------------------SDYGDGFIFPKFLYHQHDLALVDLSHIKMNGEFPTWLLE 126 (361)
Q Consensus 73 ~~~~~~~~L~~L~l~--------------------------~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~ 126 (361)
+..+.+|++|+++ .... ....+..+..+++|++|++++|.+++.....++.
T Consensus 239 --~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~ 315 (592)
T 3ogk_B 239 --FKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG-PNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQ 315 (592)
T ss_dssp --HHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC-TTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHT
T ss_pred --HhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccc-hhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHH
Confidence 2333344544441 3221 2234555666777888888877765433333456
Q ss_pred cCCCCcEEEecCCccc-CCCCCCcCCCCCcCEEEcc-----------CCcCCccCChhhhccCCCccEEEecCCcccccc
Q 042011 127 NNTKLETLFLVNDSLT-GPFRLPIHSHRWLEFLDIS-----------NNNFRCHIPVEIGDILPSLKFFNISMNALDGSI 194 (361)
Q Consensus 127 ~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~-----------~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 194 (361)
.+++|++|+++ +.+. ...+..+..+++|++|+++ .+.+++.....+...+++|++|+++.|.+++..
T Consensus 316 ~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~ 394 (592)
T 3ogk_B 316 KCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNES 394 (592)
T ss_dssp TCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHH
T ss_pred hCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHH
Confidence 77778888777 3332 2222233456778888888 355553323333444778888888777777555
Q ss_pred CccccC-CCCCCEEecc----CCcCccc-----cchhhhhCCCCCcEEEeecCC--CCCccccccc-CCCCCCEEeccCC
Q 042011 195 PSSFGN-MNFLRVLDLS----NNQLTGE-----IPEHLAVGCVNLESLALSNNS--LEGHMFSRNF-NLTNLEWLQLGGN 261 (361)
Q Consensus 195 ~~~l~~-~~~L~~L~l~----~n~l~~~-----~~~~~~~~~~~L~~L~L~~n~--l~~~~~~~~~-~~~~L~~L~L~~n 261 (361)
+..+.. +++|++|+++ .|.+++. ++.. +..+++|++|++++|. +++.....+. .+++|+.|++++|
T Consensus 395 ~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~-~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n 473 (592)
T 3ogk_B 395 LESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSL-LIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYV 473 (592)
T ss_dssp HHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHH-HHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSC
T ss_pred HHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHH-HHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCC
Confidence 555544 7788888885 5566632 2222 3368888888887543 5544333333 4788999999999
Q ss_pred cCCcc-chhhhhcCCCCCEEECcCCcccccC-CCCCCCcCcceeeccccccccCC
Q 042011 262 RFVGE-IPQSLSKCSSLEGLYLNNNSLSGNV-NVPSSPANTLFNLSQNSRRFTSS 314 (361)
Q Consensus 262 ~l~~~-~~~~~~~l~~L~~L~l~~N~l~~~~-~~~~~~~~~L~~l~l~~N~~~~~ 314 (361)
++++. ++..+..+++|++|++++|.+++.. +.....+++|++|++++|+++..
T Consensus 474 ~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 474 GESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp CSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred CCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 88763 4455677889999999999887542 33335678899999999987754
No 79
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.92 E-value=4.3e-24 Score=187.85 Aligned_cols=201 Identities=19% Similarity=0.162 Sum_probs=86.4
Q ss_pred hhccCCCCeEeCcCCcccccCCcccccCCCCCcEEEccCCCcccccccccccccCcccccEEeccCCCCCCCCCchhhcC
Q 042011 23 LVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLIAPNFQLNSLSLSSDYGDGFIFPKFLYH 102 (361)
Q Consensus 23 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~ 102 (361)
+.++++++++++++++++ .+|. .+ .++++.|++++|.+++..+.. +..+.+|++|++ ++|.++...+ ...
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~-~~--~~~l~~L~L~~N~l~~~~~~~---~~~l~~L~~L~L-~~n~l~~~~~--~~~ 75 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPP-DL--PKDTTILHLSENLLYTFSLAT---LMPYTRLTQLNL-DRAELTKLQV--DGT 75 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCS-CC--CTTCCEEECTTSCCSEEEGGG---GTTCTTCCEEEC-TTSCCCEEEC--CSC
T ss_pred ccccCCccEEECCCCCCC-cCCC-CC--CCCCCEEEcCCCcCCccCHHH---hhcCCCCCEEEC-CCCccCcccC--CCC
Confidence 344555566666665555 4442 22 145555555555554332222 222233333333 3333332211 133
Q ss_pred CCCccEEEecCCcccCCcChHHHhcCCCCcEEEecCCcccCCCCCCcCCCCCcCEEEccCCcCCccCChhhhccCCCccE
Q 042011 103 QHDLALVDLSHIKMNGEFPTWLLENNTKLETLFLVNDSLTGPFRLPIHSHRWLEFLDISNNNFRCHIPVEIGDILPSLKF 182 (361)
Q Consensus 103 l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 182 (361)
+++|++|++++|.++ .+|.. +..+++|++|++++|++++..+..|..+++|++|++++|+++ .++...+..+++|+.
T Consensus 76 l~~L~~L~Ls~N~l~-~l~~~-~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~ 152 (290)
T 1p9a_G 76 LPVLGTLDLSHNQLQ-SLPLL-GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEK 152 (290)
T ss_dssp CTTCCEEECCSSCCS-SCCCC-TTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCE
T ss_pred CCcCCEEECCCCcCC-cCchh-hccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCC-ccChhhcccccCCCE
Confidence 444555555555444 33332 344444444444444444433344444444444444444444 333333333444444
Q ss_pred EEecCCccccccCccccCCCCCCEEeccCCcCccccchhhhhCCCCCcEEEeecCC
Q 042011 183 FNISMNALDGSIPSSFGNMNFLRVLDLSNNQLTGEIPEHLAVGCVNLESLALSNNS 238 (361)
Q Consensus 183 L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~ 238 (361)
|++++|.+++..+..|..+++|++|++++|.++ .+|..++ ..++|+.+++++|.
T Consensus 153 L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~-~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 153 LSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFF-GSHLLPFAFLHGNP 206 (290)
T ss_dssp EECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTT-TTCCCSEEECCSCC
T ss_pred EECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhc-ccccCCeEEeCCCC
Confidence 444444444322333344444444444444444 4444333 33344444444443
No 80
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.92 E-value=1.6e-24 Score=192.75 Aligned_cols=204 Identities=23% Similarity=0.230 Sum_probs=152.9
Q ss_pred CCCccEEEecCCcccCCcChHHH-hcCCCCcEEEecCCcccCCCC----CCcCCCCCcCEEEccCCcCCccCChhhhccC
Q 042011 103 QHDLALVDLSHIKMNGEFPTWLL-ENNTKLETLFLVNDSLTGPFR----LPIHSHRWLEFLDISNNNFRCHIPVEIGDIL 177 (361)
Q Consensus 103 l~~L~~L~l~~n~l~~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l 177 (361)
+++|++|++++|.+++..|..++ ..+++|++|++++|.+.+..+ ..+..+++|++|++++|++. .++...+..+
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~-~~~~~~~~~l 168 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSP-AFSCEQVRAF 168 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSC-CCCTTSCCCC
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcc-hhhHHHhccC
Confidence 45688888888887766666532 677788888888887775433 23446778888888888887 4554444457
Q ss_pred CCccEEEecCCccccc--c--CccccCCCCCCEEeccCCcCccccchh---hhhCCCCCcEEEeecCCCCCcccccccCC
Q 042011 178 PSLKFFNISMNALDGS--I--PSSFGNMNFLRVLDLSNNQLTGEIPEH---LAVGCVNLESLALSNNSLEGHMFSRNFNL 250 (361)
Q Consensus 178 ~~L~~L~L~~n~l~~~--~--~~~l~~~~~L~~L~l~~n~l~~~~~~~---~~~~~~~L~~L~L~~n~l~~~~~~~~~~~ 250 (361)
++|++|++++|.+.+. + +..+..+++|++|++++|.++ .++.. ++..+++|++|++++|++++..|..+..+
T Consensus 169 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~ 247 (310)
T 4glp_A 169 PALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRC 247 (310)
T ss_dssp TTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSC
T ss_pred CCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhc
Confidence 8888888888886532 2 233467888999999999987 55543 44478899999999999988767666665
Q ss_pred ---CCCCEEeccCCcCCccchhhhhcCCCCCEEECcCCcccccCCCCCCCcCcceeeccccccccC
Q 042011 251 ---TNLEWLQLGGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGNVNVPSSPANTLFNLSQNSRRFTS 313 (361)
Q Consensus 251 ---~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~ 313 (361)
++|++|++++|+++ .+|..+. ++|+.|++++|++++. |. +..+++|+.|++++|+++.
T Consensus 248 ~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 248 MWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred cCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 69999999999999 5676663 7999999999999864 33 6778999999999999875
No 81
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.92 E-value=5.2e-24 Score=183.56 Aligned_cols=180 Identities=22% Similarity=0.226 Sum_probs=92.1
Q ss_pred CccEEEecCCcccCCcChHHHhcCCCCcEEEecCCcccCCCCCCcCCCCCcCEEEccCCcCCccCChhhhccCCCccEEE
Q 042011 105 DLALVDLSHIKMNGEFPTWLLENNTKLETLFLVNDSLTGPFRLPIHSHRWLEFLDISNNNFRCHIPVEIGDILPSLKFFN 184 (361)
Q Consensus 105 ~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 184 (361)
..++++++++.++ .+|..+ .+.+++|++++|.+.+..+..+..+++|++|++++|.+
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l------------------- 71 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGI---PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQL------------------- 71 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCC---CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC-------------------
T ss_pred CCeEEecCCCCcc-ccCCCC---CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcC-------------------
Confidence 3445555555554 444331 13445555555555444444444444555555555544
Q ss_pred ecCCccccccCccccCCCCCCEEeccCCcCccccchhhhhCCCCCcEEEeecCCCCCcccccccCCCCCCEEeccCCcCC
Q 042011 185 ISMNALDGSIPSSFGNMNFLRVLDLSNNQLTGEIPEHLAVGCVNLESLALSNNSLEGHMFSRNFNLTNLEWLQLGGNRFV 264 (361)
Q Consensus 185 L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~ 264 (361)
++..+..|..+++|++|++++|.++ .++...+..+++|++|++++|++++..+..+..+++|+.|++++|+++
T Consensus 72 ------~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 144 (251)
T 3m19_A 72 ------QTLSAGVFDDLTELGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ 144 (251)
T ss_dssp ------CCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred ------CccCHhHhccCCcCCEEECCCCccc-ccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCC
Confidence 4444444444555555555555554 333333334555555555555555444444455555555555555555
Q ss_pred ccchhhhhcCCCCCEEECcCCcccccCCCCCCCcCcceeeccccccccCC
Q 042011 265 GEIPQSLSKCSSLEGLYLNNNSLSGNVNVPSSPANTLFNLSQNSRRFTSS 314 (361)
Q Consensus 265 ~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~ 314 (361)
+..+..|..+++|+.|++++|++++..+..+..+++|+.|++.+|+|+|.
T Consensus 145 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 145 SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred ccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 44444555555555555555555555444555555556666666665554
No 82
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.92 E-value=5.7e-25 Score=195.59 Aligned_cols=232 Identities=18% Similarity=0.153 Sum_probs=183.1
Q ss_pred CCCCCcEEEccCCCcccccccccccccCcccccEEeccCCCCCCCCCchhh--cCCCCccEEEecCCcccCCcC---hHH
Q 042011 50 NHSRLKIFYADNNELNAEITQSHSLIAPNFQLNSLSLSSDYGDGFIFPKFL--YHQHDLALVDLSHIKMNGEFP---TWL 124 (361)
Q Consensus 50 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l--~~l~~L~~L~l~~n~l~~~~~---~~~ 124 (361)
....++.+.+.++.+....-.....+....+|++|++ ++|.+.+..|..+ ..+++|++|++++|.+++..+ ...
T Consensus 62 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l-~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~ 140 (310)
T 4glp_A 62 KALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTL-EDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQ 140 (310)
T ss_dssp SSCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEE-ESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHH
T ss_pred hhcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEe-eCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHH
Confidence 3456888999988876432222222334457999999 9999988888887 889999999999999986544 222
Q ss_pred HhcCCCCcEEEecCCcccCCCCCCcCCCCCcCEEEccCCcCCcc--CCh-hhhccCCCccEEEecCCccccccCc----c
Q 042011 125 LENNTKLETLFLVNDSLTGPFRLPIHSHRWLEFLDISNNNFRCH--IPV-EIGDILPSLKFFNISMNALDGSIPS----S 197 (361)
Q Consensus 125 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~-~~~~~l~~L~~L~L~~n~l~~~~~~----~ 197 (361)
+..+++|++|++++|++.+..+..+..+++|++|++++|++.+. ++. .....+++|++|++++|.++ .++. .
T Consensus 141 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l 219 (310)
T 4glp_A 141 QWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAAL 219 (310)
T ss_dssp TTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHH
T ss_pred hhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHH
Confidence 45799999999999999988888999999999999999997632 222 22234889999999999997 3333 3
Q ss_pred ccCCCCCCEEeccCCcCccccchhhhhCC---CCCcEEEeecCCCCCcccccccCCCCCCEEeccCCcCCccchhhhhcC
Q 042011 198 FGNMNFLRVLDLSNNQLTGEIPEHLAVGC---VNLESLALSNNSLEGHMFSRNFNLTNLEWLQLGGNRFVGEIPQSLSKC 274 (361)
Q Consensus 198 l~~~~~L~~L~l~~n~l~~~~~~~~~~~~---~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l 274 (361)
+..+++|++|++++|.+.+..|..++ .+ ++|++|++++|+++. +|..+. ++|+.|++++|++++. |. +..+
T Consensus 220 ~~~l~~L~~L~Ls~N~l~~~~p~~~~-~~~~~~~L~~L~Ls~N~l~~-lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l 293 (310)
T 4glp_A 220 AAAGVQPHSLDLSHNSLRATVNPSAP-RCMWSSALNSLNLSFAGLEQ-VPKGLP--AKLRVLDLSSNRLNRA-PQ-PDEL 293 (310)
T ss_dssp HHHTCCCSSEECTTSCCCCCCCSCCS-SCCCCTTCCCEECCSSCCCS-CCSCCC--SCCSCEECCSCCCCSC-CC-TTSC
T ss_pred HhcCCCCCEEECCCCCCCccchhhHH-hccCcCcCCEEECCCCCCCc-hhhhhc--CCCCEEECCCCcCCCC-ch-hhhC
Confidence 57889999999999999966576665 44 799999999999996 455553 7999999999999964 33 6788
Q ss_pred CCCCEEECcCCcccc
Q 042011 275 SSLEGLYLNNNSLSG 289 (361)
Q Consensus 275 ~~L~~L~l~~N~l~~ 289 (361)
++|+.|++++|++++
T Consensus 294 ~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 294 PEVDNLTLDGNPFLV 308 (310)
T ss_dssp CCCSCEECSSTTTSC
T ss_pred CCccEEECcCCCCCC
Confidence 999999999999985
No 83
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.91 E-value=1.9e-26 Score=211.53 Aligned_cols=246 Identities=23% Similarity=0.298 Sum_probs=189.0
Q ss_pred ccccCCCCCcEEEccCCCcccccccccccccCcccccEEeccCCCCCCCCCchhhcCCCCccEEEecCCcc---cCCcCh
Q 042011 46 EPLFNHSRLKIFYADNNELNAEITQSHSLIAPNFQLNSLSLSSDYGDGFIFPKFLYHQHDLALVDLSHIKM---NGEFPT 122 (361)
Q Consensus 46 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l---~~~~~~ 122 (361)
..+..+++|++|++++|.+....+.. ++..+..+++|++|++++|.+ ++.+|.
T Consensus 26 ~~l~~~~~L~~L~L~~n~i~~~~~~~------------------------l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~ 81 (386)
T 2ca6_A 26 AVLLEDDSVKEIVLSGNTIGTEAARW------------------------LSENIASKKDLEIAEFSDIFTGRVKDEIPE 81 (386)
T ss_dssp HHHHHCSCCCEEECTTSEECHHHHHH------------------------HHHTTTTCTTCCEEECCSCCTTSCGGGSHH
T ss_pred HHHhcCCCccEEECCCCCCCHHHHHH------------------------HHHHHHhCCCccEEeCcccccCccccchhH
Confidence 45677788888888888776432221 223456678888888888643 334454
Q ss_pred HH------HhcCCCCcEEEecCCcccC----CCCCCcCCCCCcCEEEccCCcCCccCChhhhcc---C---------CCc
Q 042011 123 WL------LENNTKLETLFLVNDSLTG----PFRLPIHSHRWLEFLDISNNNFRCHIPVEIGDI---L---------PSL 180 (361)
Q Consensus 123 ~~------~~~~~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~---l---------~~L 180 (361)
.+ +..+++|++|++++|.+.. .++..+..+++|++|++++|.+++..+..+... + ++|
T Consensus 82 ~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L 161 (386)
T 2ca6_A 82 ALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPL 161 (386)
T ss_dssp HHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCC
Confidence 42 4688999999999999986 356677889999999999999974333333332 2 899
Q ss_pred cEEEecCCccc-cccC---ccccCCCCCCEEeccCCcCccc----cch-hhhhCCCCCcEEEeecCCCC----Ccccccc
Q 042011 181 KFFNISMNALD-GSIP---SSFGNMNFLRVLDLSNNQLTGE----IPE-HLAVGCVNLESLALSNNSLE----GHMFSRN 247 (361)
Q Consensus 181 ~~L~L~~n~l~-~~~~---~~l~~~~~L~~L~l~~n~l~~~----~~~-~~~~~~~~L~~L~L~~n~l~----~~~~~~~ 247 (361)
++|++++|.++ ..++ ..+..+++|++|++++|.++.. +.. .+ ..+++|++|++++|.++ ...+..+
T Consensus 162 ~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l-~~~~~L~~L~Ls~n~l~~~g~~~l~~~l 240 (386)
T 2ca6_A 162 RSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGL-AYCQELKVLDLQDNTFTHLGSSALAIAL 240 (386)
T ss_dssp CEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTG-GGCTTCCEEECCSSCCHHHHHHHHHHHG
T ss_pred cEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHh-hcCCCccEEECcCCCCCcHHHHHHHHHH
Confidence 99999999997 3344 4677889999999999999732 222 33 37899999999999996 4567788
Q ss_pred cCCCCCCEEeccCCcCCcc----chhhhhc--CCCCCEEECcCCcccc----cCCCCC-CCcCcceeeccccccccCCcc
Q 042011 248 FNLTNLEWLQLGGNRFVGE----IPQSLSK--CSSLEGLYLNNNSLSG----NVNVPS-SPANTLFNLSQNSRRFTSSIS 316 (361)
Q Consensus 248 ~~~~~L~~L~L~~n~l~~~----~~~~~~~--l~~L~~L~l~~N~l~~----~~~~~~-~~~~~L~~l~l~~N~~~~~~~ 316 (361)
..+++|+.|++++|++++. ++..+.. +++|+.|++++|.+++ .+|..+ ..+++|++|++++|++++..+
T Consensus 241 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 241 KSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp GGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred ccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 8999999999999999876 4566644 8999999999999997 366666 557999999999999998764
No 84
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.91 E-value=2.9e-24 Score=183.80 Aligned_cols=196 Identities=19% Similarity=0.206 Sum_probs=127.1
Q ss_pred CccEEEecCCcccCCcChHHHhcCCCCcEEEecCCc-ccCCCCCCcCCCCCcCEEEccC-CcCCccCChhhhccCCCccE
Q 042011 105 DLALVDLSHIKMNGEFPTWLLENNTKLETLFLVNDS-LTGPFRLPIHSHRWLEFLDISN-NNFRCHIPVEIGDILPSLKF 182 (361)
Q Consensus 105 ~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~l~~L~~ 182 (361)
.+++|++++|.++ .++...+.++++|++|++++|+ ++...+..|..+++|++|++++ |+++ .++...+..+++|++
T Consensus 32 ~l~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~-~i~~~~f~~l~~L~~ 109 (239)
T 2xwt_C 32 STQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT-YIDPDALKELPLLKF 109 (239)
T ss_dssp TCCEEEEESCCCS-EECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC-EECTTSEECCTTCCE
T ss_pred cccEEEEeCCcce-EECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee-EcCHHHhCCCCCCCE
Confidence 6677777777776 4444336667777777777775 6655555666777777777776 7776 555554445677777
Q ss_pred EEecCCccccccCccccCCCCCC---EEeccCC-cCccccchhhhhCCCCCc-EEEeecCCCCCcccccccCCCCCCEEe
Q 042011 183 FNISMNALDGSIPSSFGNMNFLR---VLDLSNN-QLTGEIPEHLAVGCVNLE-SLALSNNSLEGHMFSRNFNLTNLEWLQ 257 (361)
Q Consensus 183 L~L~~n~l~~~~~~~l~~~~~L~---~L~l~~n-~l~~~~~~~~~~~~~~L~-~L~L~~n~l~~~~~~~~~~~~~L~~L~ 257 (361)
|++++|.+++ +|. +..+++|+ +|++++| .++ .++...+..+++|+ +|++++|+++...+..+.. ++|+.|+
T Consensus 110 L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~-~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~ 185 (239)
T 2xwt_C 110 LGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMT-SIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVY 185 (239)
T ss_dssp EEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCC-EECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEE
T ss_pred EeCCCCCCcc-ccc-cccccccccccEEECCCCcchh-hcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEE
Confidence 7777777763 554 66666666 7777777 666 56655555677777 7777777776544444444 6777777
Q ss_pred ccCCc-CCccchhhhhcC-CCCCEEECcCCcccccCCCCCCCcCcceeeccccc
Q 042011 258 LGGNR-FVGEIPQSLSKC-SSLEGLYLNNNSLSGNVNVPSSPANTLFNLSQNSR 309 (361)
Q Consensus 258 L~~n~-l~~~~~~~~~~l-~~L~~L~l~~N~l~~~~~~~~~~~~~L~~l~l~~N 309 (361)
+++|+ +++..+..|..+ ++|+.|++++|++++..+. .+++|+.|++.++
T Consensus 186 L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 186 LNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNT 236 (239)
T ss_dssp CTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred cCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCc
Confidence 77774 765556667777 7777777777777653333 4556666666654
No 85
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.91 E-value=6.2e-26 Score=219.50 Aligned_cols=305 Identities=14% Similarity=0.102 Sum_probs=202.6
Q ss_pred CCeEeCCCcc-ccC-cCChhhhhccCCCCeEeCcCCccccc----CCcccccCCCCCcEEEccCCCccccccccc-cccc
Q 042011 4 LRILDVSSNQ-LTG-SISSSPLVHLTSIEELMLSNNHFQIP----ISLEPLFNHSRLKIFYADNNELNAEITQSH-SLIA 76 (361)
Q Consensus 4 L~~L~L~~n~-i~~-~i~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~~~ 76 (361)
|++|++++|. ++. .++. ....+++|++|+|++|.+++. ++ ..+..+++|++|++++|.+++.....+ ..+.
T Consensus 140 L~~L~L~~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~~~~~~~l~-~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~ 217 (592)
T 3ogk_B 140 LETLKLDKCSGFTTDGLLS-IVTHCRKIKTLLMEESSFSEKDGKWLH-ELAQHNTSLEVLNFYMTEFAKISPKDLETIAR 217 (592)
T ss_dssp CCEEEEESCEEEEHHHHHH-HHHHCTTCSEEECTTCEEECCCSHHHH-HHHHHCCCCCEEECTTCCCSSCCHHHHHHHHH
T ss_pred CcEEECcCCCCcCHHHHHH-HHhhCCCCCEEECccccccCcchhHHH-HHHhcCCCccEEEeeccCCCccCHHHHHHHHh
Confidence 9999999986 321 1222 445899999999999998743 22 245688999999999999873322221 1134
Q ss_pred CcccccEEeccCCCCCCCCCchhhcCCCCccEEEecCCccc--------------------------CCcChHHHhcCCC
Q 042011 77 PNFQLNSLSLSSDYGDGFIFPKFLYHQHDLALVDLSHIKMN--------------------------GEFPTWLLENNTK 130 (361)
Q Consensus 77 ~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~--------------------------~~~~~~~~~~~~~ 130 (361)
.+.+|++|++ +++.+.+ .+..+..+++|++|+++..... ..++.. +..+++
T Consensus 218 ~~~~L~~L~L-~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~-~~~~~~ 294 (592)
T 3ogk_B 218 NCRSLVSVKV-GDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPIL-FPFAAQ 294 (592)
T ss_dssp HCTTCCEEEC-SSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGG-GGGGGG
T ss_pred hCCCCcEEec-cCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHH-HhhcCC
Confidence 5679999999 7777664 4566777777777777642111 123332 556667
Q ss_pred CcEEEecCCcccCCCC-CCcCCCCCcCEEEccCCcCCccCChhhhccCCCccEEEecC-----------Cccccc-cCcc
Q 042011 131 LETLFLVNDSLTGPFR-LPIHSHRWLEFLDISNNNFRCHIPVEIGDILPSLKFFNISM-----------NALDGS-IPSS 197 (361)
Q Consensus 131 L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~-----------n~l~~~-~~~~ 197 (361)
|++|++++|.+++... ..+..+++|++|+++ +.+.+.....+...+++|++|++++ +.+++. ++..
T Consensus 295 L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l 373 (592)
T 3ogk_B 295 IRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIAL 373 (592)
T ss_dssp CCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHH
T ss_pred CcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHH
Confidence 7777777776543222 224566777777777 3333233333434467788888873 444422 2222
Q ss_pred ccCCCCCCEEeccCCcCccccchhhhhCCCCCcEEEee----cCCCCCc-----ccccccCCCCCCEEeccCCc--CCcc
Q 042011 198 FGNMNFLRVLDLSNNQLTGEIPEHLAVGCVNLESLALS----NNSLEGH-----MFSRNFNLTNLEWLQLGGNR--FVGE 266 (361)
Q Consensus 198 l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~----~n~l~~~-----~~~~~~~~~~L~~L~L~~n~--l~~~ 266 (361)
+..+++|++|+++.|.+++..+..+...+++|+.|+++ .|.+++. .+..+..+++|+.|++++|. +++.
T Consensus 374 ~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~ 453 (592)
T 3ogk_B 374 AQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDL 453 (592)
T ss_dssp HHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHH
T ss_pred HhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHH
Confidence 44578888888888888766666666558889999886 5566653 23335668899999997544 6655
Q ss_pred chhhhhc-CCCCCEEECcCCccccc-CCCCCCCcCcceeeccccccccCC
Q 042011 267 IPQSLSK-CSSLEGLYLNNNSLSGN-VNVPSSPANTLFNLSQNSRRFTSS 314 (361)
Q Consensus 267 ~~~~~~~-l~~L~~L~l~~N~l~~~-~~~~~~~~~~L~~l~l~~N~~~~~ 314 (361)
.+..+.. +++|+.|++++|++++. ++..+..+++|++|++++|+++..
T Consensus 454 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 503 (592)
T 3ogk_B 454 GLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSER 503 (592)
T ss_dssp HHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHH
T ss_pred HHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHH
Confidence 5555544 88999999999998763 344457789999999999997643
No 86
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.91 E-value=1.4e-23 Score=186.35 Aligned_cols=192 Identities=19% Similarity=0.249 Sum_probs=113.0
Q ss_pred cccccEEeccCCCCCCCCCchhhcCCCCccEEEecCCcccCCcChHHHhcCCCCcEEEecCCcccCCCCCCcCCCCCcCE
Q 042011 78 NFQLNSLSLSSDYGDGFIFPKFLYHQHDLALVDLSHIKMNGEFPTWLLENNTKLETLFLVNDSLTGPFRLPIHSHRWLEF 157 (361)
Q Consensus 78 ~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 157 (361)
+.+|++|++ .++.+... + .+..+++|++|++++|.++ .++. +..+++|++|++++|++.+. ..+..+++|++
T Consensus 40 l~~L~~L~l-~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~-~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~ 111 (308)
T 1h6u_A 40 LDGITTLSA-FGTGVTTI-E-GVQYLNNLIGLELKDNQIT-DLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKT 111 (308)
T ss_dssp HHTCCEEEC-TTSCCCCC-T-TGGGCTTCCEEECCSSCCC-CCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCE
T ss_pred cCCcCEEEe-eCCCccCc-h-hhhccCCCCEEEccCCcCC-CChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCE
Confidence 346666666 66665542 2 4566666666666666665 3333 55666666666666666542 24566666666
Q ss_pred EEccCCcCCccCChhhhccCCCccEEEecCCccccccCccccCCCCCCEEeccCCcCccccchhhhhCCCCCcEEEeecC
Q 042011 158 LDISNNNFRCHIPVEIGDILPSLKFFNISMNALDGSIPSSFGNMNFLRVLDLSNNQLTGEIPEHLAVGCVNLESLALSNN 237 (361)
Q Consensus 158 L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n 237 (361)
|++++|+++ .++. + ..+++|++|++++|.+++..+ +..+++|++|++++|.++ .++. +..+++|+.|++++|
T Consensus 112 L~l~~n~l~-~~~~-l-~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~-~~~~--l~~l~~L~~L~l~~n 183 (308)
T 1h6u_A 112 LDLTSTQIT-DVTP-L-AGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVS-DLTP--LANLSKLTTLKADDN 183 (308)
T ss_dssp EECTTSCCC-CCGG-G-TTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSS
T ss_pred EECCCCCCC-Cchh-h-cCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCC-CChh--hcCCCCCCEEECCCC
Confidence 666666665 3433 2 235666666666666653222 556666666666666666 4443 235666666666666
Q ss_pred CCCCcccccccCCCCCCEEeccCCcCCccchhhhhcCCCCCEEECcCCcccc
Q 042011 238 SLEGHMFSRNFNLTNLEWLQLGGNRFVGEIPQSLSKCSSLEGLYLNNNSLSG 289 (361)
Q Consensus 238 ~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 289 (361)
++++..+ +..+++|+.|++++|++++.. .+..+++|+.|++++|++++
T Consensus 184 ~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 184 KISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred ccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence 6665332 555666666666666666433 25566666666666666654
No 87
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.91 E-value=4.2e-25 Score=200.71 Aligned_cols=260 Identities=17% Similarity=0.107 Sum_probs=182.2
Q ss_pred eEeCcCCcccccCCcccccCCCCCcEEEccCCCcccccccccccccCcccccEEeccCCCCCCCCCchhhcCCC-CccEE
Q 042011 31 ELMLSNNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLIAPNFQLNSLSLSSDYGDGFIFPKFLYHQH-DLALV 109 (361)
Q Consensus 31 ~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~-~L~~L 109 (361)
..++++|++++.++ ..+...++|++|++++|.+++..... ....+..++ +|++|
T Consensus 2 ~~~ls~n~~~~~~~-~~~~~~~~L~~L~Ls~n~l~~~~~~~------------------------l~~~l~~~~~~L~~L 56 (362)
T 3goz_A 2 NYKLTLHPGSNPVE-EFTSIPHGVTSLDLSLNNLYSISTVE------------------------LIQAFANTPASVTSL 56 (362)
T ss_dssp EEECCCCTTCCHHH-HHHTSCTTCCEEECTTSCGGGSCHHH------------------------HHHHHHTCCTTCCEE
T ss_pred ccccccccchHHHH-HHHhCCCCceEEEccCCCCChHHHHH------------------------HHHHHHhCCCceeEE
Confidence 35677777776555 34444555888888887775432211 114566666 78888
Q ss_pred EecCCcccCCcChHHHhcC-----CCCcEEEecCCcccCCCCCC----cCCC-CCcCEEEccCCcCCccCChhhhcc---
Q 042011 110 DLSHIKMNGEFPTWLLENN-----TKLETLFLVNDSLTGPFRLP----IHSH-RWLEFLDISNNNFRCHIPVEIGDI--- 176 (361)
Q Consensus 110 ~l~~n~l~~~~~~~~~~~~-----~~L~~L~l~~n~l~~~~~~~----~~~l-~~L~~L~l~~n~l~~~~~~~~~~~--- 176 (361)
++++|.+++..+.. +... ++|++|++++|.+++..+.. +..+ ++|++|++++|++++..+..+...
T Consensus 57 ~Ls~N~l~~~~~~~-l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~ 135 (362)
T 3goz_A 57 NLSGNSLGFKNSDE-LVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSN 135 (362)
T ss_dssp ECCSSCGGGSCHHH-HHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTT
T ss_pred ECcCCCCCHHHHHH-HHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHh
Confidence 88888877544443 3333 78888888888877654443 3334 789999999999874433333221
Q ss_pred -CCCccEEEecCCccccc----cCccccCCC-CCCEEeccCCcCccccchhhh---hCC-CCCcEEEeecCCCCCc----
Q 042011 177 -LPSLKFFNISMNALDGS----IPSSFGNMN-FLRVLDLSNNQLTGEIPEHLA---VGC-VNLESLALSNNSLEGH---- 242 (361)
Q Consensus 177 -l~~L~~L~L~~n~l~~~----~~~~l~~~~-~L~~L~l~~n~l~~~~~~~~~---~~~-~~L~~L~L~~n~l~~~---- 242 (361)
.++|++|++++|.+++. ++..+...+ +|++|++++|.+++..+..+. ... ++|++|++++|.+++.
T Consensus 136 ~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~ 215 (362)
T 3goz_A 136 LPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAE 215 (362)
T ss_dssp SCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHH
T ss_pred CCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHH
Confidence 25999999999999843 334445565 999999999999855443332 244 5999999999999873
Q ss_pred ccccccC-CCCCCEEeccCCcCCccch----hhhhcCCCCCEEECcCCccccc-------CCCCCCCcCcceeecccccc
Q 042011 243 MFSRNFN-LTNLEWLQLGGNRFVGEIP----QSLSKCSSLEGLYLNNNSLSGN-------VNVPSSPANTLFNLSQNSRR 310 (361)
Q Consensus 243 ~~~~~~~-~~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~l~~N~l~~~-------~~~~~~~~~~L~~l~l~~N~ 310 (361)
.+..+.. .++|+.|++++|++++..+ ..+..+++|+.|++++|.+.+. ++..+..+++|+.|++++|+
T Consensus 216 l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 216 LAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp HHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred HHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 2334444 5699999999999997655 3346679999999999995443 33467889999999999999
Q ss_pred ccCCcc
Q 042011 311 FTSSIS 316 (361)
Q Consensus 311 ~~~~~~ 316 (361)
+....+
T Consensus 296 l~~~~~ 301 (362)
T 3goz_A 296 IHPSHS 301 (362)
T ss_dssp CCGGGC
T ss_pred CCCcch
Confidence 987633
No 88
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.91 E-value=7.4e-24 Score=181.22 Aligned_cols=196 Identities=17% Similarity=0.143 Sum_probs=148.6
Q ss_pred ccEEeccCCCCCCCCCchhhcCCCCccEEEecCCc-ccCCcChHHHhcCCCCcEEEecC-CcccCCCCCCcCCCCCcCEE
Q 042011 81 LNSLSLSSDYGDGFIFPKFLYHQHDLALVDLSHIK-MNGEFPTWLLENNTKLETLFLVN-DSLTGPFRLPIHSHRWLEFL 158 (361)
Q Consensus 81 L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L 158 (361)
|++|++ +++.++...+..|..+++|++|++++|+ ++ .++...|.++++|++|++++ |++++..+..|..+++|++|
T Consensus 33 l~~L~l-~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 33 TQTLKL-IETHLRTIPSHAFSNLPNISRIYVSIDVTLQ-QLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp CCEEEE-ESCCCSEECTTTTTTCTTCCEEEEECCSSCC-EECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred ccEEEE-eCCcceEECHHHccCCCCCcEEeCCCCCCcc-eeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 334444 3334443444567777888888888886 66 55554477888888888887 88876666778888888888
Q ss_pred EccCCcCCccCChhhhccCCCcc---EEEecCC-ccccccCccccCCCCCC-EEeccCCcCccccchhhhhCCCCCcEEE
Q 042011 159 DISNNNFRCHIPVEIGDILPSLK---FFNISMN-ALDGSIPSSFGNMNFLR-VLDLSNNQLTGEIPEHLAVGCVNLESLA 233 (361)
Q Consensus 159 ~l~~n~l~~~~~~~~~~~l~~L~---~L~L~~n-~l~~~~~~~l~~~~~L~-~L~l~~n~l~~~~~~~~~~~~~~L~~L~ 233 (361)
++++|+++ .+|. + ..+++|+ +|++++| .+++..+..|..+++|+ +|++++|.++ .+|...+.. ++|++|+
T Consensus 111 ~l~~n~l~-~lp~-~-~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~-~~L~~L~ 185 (239)
T 2xwt_C 111 GIFNTGLK-MFPD-L-TKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNG-TKLDAVY 185 (239)
T ss_dssp EEEEECCC-SCCC-C-TTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTT-CEEEEEE
T ss_pred eCCCCCCc-cccc-c-ccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCC-CCCCEEE
Confidence 88888887 5765 3 3367777 9999998 88866666788899999 9999999998 888877744 7899999
Q ss_pred eecCC-CCCcccccccCC-CCCCEEeccCCcCCccchhhhhcCCCCCEEECcCCc
Q 042011 234 LSNNS-LEGHMFSRNFNL-TNLEWLQLGGNRFVGEIPQSLSKCSSLEGLYLNNNS 286 (361)
Q Consensus 234 L~~n~-l~~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 286 (361)
+++|+ +++..+..+..+ ++|+.|++++|++++. |.. .+++|+.|+++++.
T Consensus 186 L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l-~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 186 LNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTAL-PSK--GLEHLKELIARNTW 237 (239)
T ss_dssp CTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCC-CCT--TCTTCSEEECTTC-
T ss_pred cCCCCCcccCCHHHhhccccCCcEEECCCCccccC-Chh--HhccCceeeccCcc
Confidence 99995 888777788888 8999999999999854 433 56789999988763
No 89
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.91 E-value=1.2e-24 Score=195.66 Aligned_cols=211 Identities=18% Similarity=0.179 Sum_probs=131.4
Q ss_pred cccEEeccCCCCCCCC-CchhhcCCCCccEEEecCCcccCCcChHHHhcCCCCcEEEecCC-cccC-CCCCCcCCCCCcC
Q 042011 80 QLNSLSLSSDYGDGFI-FPKFLYHQHDLALVDLSHIKMNGEFPTWLLENNTKLETLFLVND-SLTG-PFRLPIHSHRWLE 156 (361)
Q Consensus 80 ~L~~L~l~~~~~~~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n-~l~~-~~~~~~~~l~~L~ 156 (361)
+|++|++ +++.+.+. .+..+..+++|++|++++|.+++..+.. +..+++|++|++++| .+++ ..+..+..+++|+
T Consensus 94 ~L~~L~L-~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~-l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~ 171 (336)
T 2ast_B 94 RVQHMDL-SNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNT-LAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD 171 (336)
T ss_dssp CCCEEEC-TTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHH-HTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCC
T ss_pred CCCEEEc-cCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHH-HhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCC
Confidence 4444444 33333322 3445556666666666666665444444 455666666666666 4443 1344455666777
Q ss_pred EEEccCC-cCCcc-CChhhhccCC-CccEEEecCC--ccc-cccCccccCCCCCCEEeccCCc-CccccchhhhhCCCCC
Q 042011 157 FLDISNN-NFRCH-IPVEIGDILP-SLKFFNISMN--ALD-GSIPSSFGNMNFLRVLDLSNNQ-LTGEIPEHLAVGCVNL 229 (361)
Q Consensus 157 ~L~l~~n-~l~~~-~~~~~~~~l~-~L~~L~L~~n--~l~-~~~~~~l~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~L 229 (361)
+|++++| .+++. ++..+.. ++ +|++|++++| .++ +.++..+..+++|++|++++|. +++..+..+. .+++|
T Consensus 172 ~L~l~~~~~l~~~~~~~~~~~-l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~-~l~~L 249 (336)
T 2ast_B 172 ELNLSWCFDFTEKHVQVAVAH-VSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF-QLNYL 249 (336)
T ss_dssp EEECCCCTTCCHHHHHHHHHH-SCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGG-GCTTC
T ss_pred EEcCCCCCCcChHHHHHHHHh-cccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHh-CCCCC
Confidence 7777777 66532 3333333 67 7888888877 343 3455566677888888888887 5545555554 67888
Q ss_pred cEEEeecCC-CCCcccccccCCCCCCEEeccCCcCCccchhhhhcCCCCCEEECcCCcccccCCCCCCC
Q 042011 230 ESLALSNNS-LEGHMFSRNFNLTNLEWLQLGGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGNVNVPSSP 297 (361)
Q Consensus 230 ~~L~L~~n~-l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~ 297 (361)
++|++++|. +.......+..+++|+.|++++| +.......+. .+++.|++++|++++..|..+..
T Consensus 250 ~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~--~~l~~L~l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 250 QHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLK--EALPHLQINCSHFTTIARPTIGN 315 (336)
T ss_dssp CEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHH--HHSTTSEESCCCSCCTTCSSCSS
T ss_pred CEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHH--hhCcceEEecccCccccCCcccc
Confidence 888888884 33333335677889999999988 5543333332 23566668999999888876654
No 90
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.90 E-value=6e-23 Score=176.88 Aligned_cols=180 Identities=23% Similarity=0.197 Sum_probs=138.5
Q ss_pred cccEEeccCCCCCCCCCchhhcCCCCccEEEecCCcccCCcChHHHhcCCCCcEEEecCCcccCCCCCCcCCCCCcCEEE
Q 042011 80 QLNSLSLSSDYGDGFIFPKFLYHQHDLALVDLSHIKMNGEFPTWLLENNTKLETLFLVNDSLTGPFRLPIHSHRWLEFLD 159 (361)
Q Consensus 80 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 159 (361)
..+++++ .++.+.. +|..+. +.++.|++++|.+++..+.. +.++++|++|++++|.+.+..+..+..+++|++|+
T Consensus 15 ~~~~l~~-~~~~l~~-~p~~~~--~~l~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 89 (251)
T 3m19_A 15 GKKEVDC-QGKSLDS-VPSGIP--ADTEKLDLQSTGLATLSDAT-FRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLG 89 (251)
T ss_dssp GGTEEEC-TTCCCSS-CCSCCC--TTCCEEECTTSCCCCCCTTT-TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCeEEec-CCCCccc-cCCCCC--CCCCEEEccCCCcCccCHhH-hcCcccCCEEECCCCcCCccCHhHhccCCcCCEEE
Confidence 6788999 8888874 444443 68999999999998544444 88999999999999999988888899999999999
Q ss_pred ccCCcCCccCChhhhccCCCccEEEecCCccccccCccccCCCCCCEEeccCCcCccccchhhhhCCCCCcEEEeecCCC
Q 042011 160 ISNNNFRCHIPVEIGDILPSLKFFNISMNALDGSIPSSFGNMNFLRVLDLSNNQLTGEIPEHLAVGCVNLESLALSNNSL 239 (361)
Q Consensus 160 l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l 239 (361)
+++|+++ .++...+..+++|++|++++|.+++..+..|..+++|++|++++|.++ .++...+..+++|++|++++|++
T Consensus 90 L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~l 167 (251)
T 3m19_A 90 LANNQLA-SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQL 167 (251)
T ss_dssp CTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCC
T ss_pred CCCCccc-ccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCC-ccCHHHcCcCcCCCEEECCCCcC
Confidence 9999998 666666556888888888888888555556677778888888888777 55554444667777777777777
Q ss_pred CCcccccccCCCCCCEEeccCCcCCcc
Q 042011 240 EGHMFSRNFNLTNLEWLQLGGNRFVGE 266 (361)
Q Consensus 240 ~~~~~~~~~~~~~L~~L~L~~n~l~~~ 266 (361)
++..+..+..+++|+.|++++|++.+.
T Consensus 168 ~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 168 QSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp SCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 766555666667777777777766543
No 91
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.90 E-value=9.7e-25 Score=196.29 Aligned_cols=252 Identities=18% Similarity=0.200 Sum_probs=193.2
Q ss_pred CCCcEEEccCCCcccccccccccccCc--ccccEEeccCCCCCCCCCchhhcCCCCccEEEecCCcccCC-cChHHHhcC
Q 042011 52 SRLKIFYADNNELNAEITQSHSLIAPN--FQLNSLSLSSDYGDGFIFPKFLYHQHDLALVDLSHIKMNGE-FPTWLLENN 128 (361)
Q Consensus 52 ~~L~~L~l~~n~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~~~~~~ 128 (361)
..++.++++++.+... . +... .+++.+++ .++.+.+..+. +..+++|++|++++|.+++. ++.. +..+
T Consensus 47 ~~~~~l~l~~~~~~~~---~---~~~~~~~~l~~L~l-~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~-~~~~ 117 (336)
T 2ast_B 47 SLWQTLDLTGKNLHPD---V---TGRLLSQGVIAFRC-PRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGI-LSQC 117 (336)
T ss_dssp TTSSEEECTTCBCCHH---H---HHHHHHTTCSEEEC-TTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHH-HTTB
T ss_pred hhheeeccccccCCHH---H---HHhhhhccceEEEc-CCccccccchh-hccCCCCCEEEccCCCcCHHHHHHH-HhhC
Confidence 3477888888776521 1 2222 47888888 77777766554 55789999999999998754 4444 7889
Q ss_pred CCCcEEEecCCcccCCCCCCcCCCCCcCEEEccCC-cCCcc-CChhhhccCCCccEEEecCC-ccccc-cCccccCCC-C
Q 042011 129 TKLETLFLVNDSLTGPFRLPIHSHRWLEFLDISNN-NFRCH-IPVEIGDILPSLKFFNISMN-ALDGS-IPSSFGNMN-F 203 (361)
Q Consensus 129 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~~l~~L~~L~L~~n-~l~~~-~~~~l~~~~-~ 203 (361)
++|++|++++|.+++..+..+..+++|++|++++| .+++. ++..+. .+++|++|++++| .+++. ++..+..++ +
T Consensus 118 ~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~-~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~ 196 (336)
T 2ast_B 118 SKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLS-SCSRLDELNLSWCFDFTEKHVQVAVAHVSET 196 (336)
T ss_dssp CCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHH-HCTTCCEEECCCCTTCCHHHHHHHHHHSCTT
T ss_pred CCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHh-cCCCCCEEcCCCCCCcChHHHHHHHHhcccC
Confidence 99999999999988777778888999999999999 67642 444344 4899999999999 88753 566788899 9
Q ss_pred CCEEeccCC--cCc-cccchhhhhCCCCCcEEEeecCC-CCCcccccccCCCCCCEEeccCCc-CCccchhhhhcCCCCC
Q 042011 204 LRVLDLSNN--QLT-GEIPEHLAVGCVNLESLALSNNS-LEGHMFSRNFNLTNLEWLQLGGNR-FVGEIPQSLSKCSSLE 278 (361)
Q Consensus 204 L~~L~l~~n--~l~-~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~ 278 (361)
|++|++++| .++ +.++..+. .+++|++|++++|. +++..+..+..+++|+.|++++|. +.......+..+++|+
T Consensus 197 L~~L~l~~~~~~~~~~~l~~~~~-~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~ 275 (336)
T 2ast_B 197 ITQLNLSGYRKNLQKSDLSTLVR-RCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLK 275 (336)
T ss_dssp CCEEECCSCGGGSCHHHHHHHHH-HCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCC
T ss_pred CCEEEeCCCcccCCHHHHHHHHh-hCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCC
Confidence 999999999 454 24555544 79999999999999 776677788899999999999995 4333334688899999
Q ss_pred EEECcCCcccccCCCCCCCc-CcceeeccccccccCCcccc
Q 042011 279 GLYLNNNSLSGNVNVPSSPA-NTLFNLSQNSRRFTSSISHS 318 (361)
Q Consensus 279 ~L~l~~N~l~~~~~~~~~~~-~~L~~l~l~~N~~~~~~~~~ 318 (361)
.|++++| +++ ..+..+ ..+..|++++|++++..|..
T Consensus 276 ~L~l~~~-i~~---~~~~~l~~~l~~L~l~~n~l~~~~~~~ 312 (336)
T 2ast_B 276 TLQVFGI-VPD---GTLQLLKEALPHLQINCSHFTTIARPT 312 (336)
T ss_dssp EEECTTS-SCT---TCHHHHHHHSTTSEESCCCSCCTTCSS
T ss_pred EEeccCc-cCH---HHHHHHHhhCcceEEecccCccccCCc
Confidence 9999999 432 234444 34778889999999887754
No 92
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.90 E-value=1.1e-22 Score=180.62 Aligned_cols=208 Identities=17% Similarity=0.230 Sum_probs=165.3
Q ss_pred eCCCccccCcCChhhhhccCCCCeEeCcCCcccccCCcccccCCCCCcEEEccCCCcccccccccccccCcccccEEecc
Q 042011 8 DVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLIAPNFQLNSLSLS 87 (361)
Q Consensus 8 ~L~~n~i~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~ 87 (361)
.+..+.++ .+. .+..+++|++|++++|.++ .++ .+..+++|++|++++|.+++..+ +..+.+|++|++
T Consensus 25 ~l~~~~~~-~~~--~~~~l~~L~~L~l~~~~i~-~l~--~~~~l~~L~~L~L~~n~i~~~~~-----~~~l~~L~~L~L- 92 (308)
T 1h6u_A 25 AAGKSNVT-DTV--TQADLDGITTLSAFGTGVT-TIE--GVQYLNNLIGLELKDNQITDLAP-----LKNLTKITELEL- 92 (308)
T ss_dssp HTTCSSTT-SEE--CHHHHHTCCEEECTTSCCC-CCT--TGGGCTTCCEEECCSSCCCCCGG-----GTTCCSCCEEEC-
T ss_pred HhCCCCcC-cee--cHHHcCCcCEEEeeCCCcc-Cch--hhhccCCCCEEEccCCcCCCChh-----HccCCCCCEEEc-
Confidence 34555555 322 2567889999999999887 555 57888999999999998876443 456678999999
Q ss_pred CCCCCCCCCchhhcCCCCccEEEecCCcccCCcChHHHhcCCCCcEEEecCCcccCCCCCCcCCCCCcCEEEccCCcCCc
Q 042011 88 SDYGDGFIFPKFLYHQHDLALVDLSHIKMNGEFPTWLLENNTKLETLFLVNDSLTGPFRLPIHSHRWLEFLDISNNNFRC 167 (361)
Q Consensus 88 ~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 167 (361)
++|.+.+. ..+..+++|++|++++|.++ .++. +..+++|++|++++|.+.+..+ +..+++|++|++++|+++
T Consensus 93 ~~n~l~~~--~~~~~l~~L~~L~l~~n~l~-~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~- 164 (308)
T 1h6u_A 93 SGNPLKNV--SAIAGLQSIKTLDLTSTQIT-DVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVS- 164 (308)
T ss_dssp CSCCCSCC--GGGTTCTTCCEEECTTSCCC-CCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC-
T ss_pred cCCcCCCc--hhhcCCCCCCEEECCCCCCC-Cchh--hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCC-
Confidence 88888754 36888999999999999998 4554 7889999999999999986443 788899999999999998
Q ss_pred cCChhhhccCCCccEEEecCCccccccCccccCCCCCCEEeccCCcCccccchhhhhCCCCCcEEEeecCCCCCc
Q 042011 168 HIPVEIGDILPSLKFFNISMNALDGSIPSSFGNMNFLRVLDLSNNQLTGEIPEHLAVGCVNLESLALSNNSLEGH 242 (361)
Q Consensus 168 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~ 242 (361)
.++. + ..+++|+.|++++|.+++..+ +..+++|++|++++|.+. .++. + ..+++|+.|++++|.+++.
T Consensus 165 ~~~~-l-~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~-~~~~-l-~~l~~L~~L~l~~N~i~~~ 232 (308)
T 1h6u_A 165 DLTP-L-ANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQIS-DVSP-L-ANTSNLFIVTLTNQTITNQ 232 (308)
T ss_dssp CCGG-G-TTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCC-BCGG-G-TTCTTCCEEEEEEEEEECC
T ss_pred CChh-h-cCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccC-cccc-c-cCCCCCCEEEccCCeeecC
Confidence 5655 3 448999999999999984433 788999999999999998 5553 3 4799999999999998763
No 93
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.89 E-value=5.6e-25 Score=212.84 Aligned_cols=306 Identities=16% Similarity=0.089 Sum_probs=146.2
Q ss_pred CCCCCeEeCCCccccCcCChhhhh-ccCCCCeEeCcCC-ccccc-CCcccccCCCCCcEEEccCCCccccccccccccc-
Q 042011 1 MTSLRILDVSSNQLTGSISSSPLV-HLTSIEELMLSNN-HFQIP-ISLEPLFNHSRLKIFYADNNELNAEITQSHSLIA- 76 (361)
Q Consensus 1 l~~L~~L~L~~n~i~~~i~~~~~~-~l~~L~~L~Ls~n-~l~~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~- 76 (361)
+++|++|++++|.+++..+. .+. .+++|++|++++| .++.. ++ ..+.++++|++|++++|.+++.....+..+.
T Consensus 104 ~~~L~~L~L~~~~~~~~~~~-~l~~~~~~L~~L~L~~~~~~~~~~l~-~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~ 181 (594)
T 2p1m_B 104 YTWLEEIRLKRMVVTDDCLE-LIAKSFKNFKVLVLSSCEGFSTDGLA-AIAATCRNLKELDLRESDVDDVSGHWLSHFPD 181 (594)
T ss_dssp CTTCCEEEEESCBCCHHHHH-HHHHHCTTCCEEEEESCEEEEHHHHH-HHHHHCTTCCEEECTTCEEECCCGGGGGGSCT
T ss_pred CCCCCeEEeeCcEEcHHHHH-HHHHhCCCCcEEeCCCcCCCCHHHHH-HHHHhCCCCCEEeCcCCccCCcchHHHHHHhh
Confidence 35677777777776644444 333 5777777777777 44321 22 2334677777777777776654433322222
Q ss_pred CcccccEEeccCCCC--CCCC-CchhhcCCCCccEEEecCCc-ccCCcChHHHhcCCCCcEEEecCCc------------
Q 042011 77 PNFQLNSLSLSSDYG--DGFI-FPKFLYHQHDLALVDLSHIK-MNGEFPTWLLENNTKLETLFLVNDS------------ 140 (361)
Q Consensus 77 ~~~~L~~L~l~~~~~--~~~~-~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~------------ 140 (361)
.+.+|++|++ +.+. +... ....+..+++|++|++++|. +. .++.. +..+++|++|+++.+.
T Consensus 182 ~~~~L~~L~l-~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~-~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~l~ 258 (594)
T 2p1m_B 182 TYTSLVSLNI-SCLASEVSFSALERLVTRCPNLKSLKLNRAVPLE-KLATL-LQRAPQLEELGTGGYTAEVRPDVYSGLS 258 (594)
T ss_dssp TCCCCCEEEC-TTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHH-HHHHH-HHHCTTCSEEECSBCCCCCCHHHHHHHH
T ss_pred cCCcCcEEEe-cccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHH-HHHHH-HhcCCcceEcccccccCccchhhHHHHH
Confidence 4557777777 5554 2111 11122345777777777662 22 22222 3444455555433221
Q ss_pred --------------ccCC----CCCCcCCCCCcCEEEccCCcCCccCChhhhccCCCccEEEecCC--------------
Q 042011 141 --------------LTGP----FRLPIHSHRWLEFLDISNNNFRCHIPVEIGDILPSLKFFNISMN-------------- 188 (361)
Q Consensus 141 --------------l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n-------------- 188 (361)
+... ++..+..+++|++|++++|.+++.....+...+++|++|++++|
T Consensus 259 ~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~ 338 (594)
T 2p1m_B 259 VALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCK 338 (594)
T ss_dssp HHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCT
T ss_pred HHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCC
Confidence 1000 11111234556666666655442222222223445555555444
Q ss_pred -------------------ccccccCccc-cCCCCCCEEeccCCcCccccchhhhhCCCCCcEEEee--c----CCCCCc
Q 042011 189 -------------------ALDGSIPSSF-GNMNFLRVLDLSNNQLTGEIPEHLAVGCVNLESLALS--N----NSLEGH 242 (361)
Q Consensus 189 -------------------~l~~~~~~~l-~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~--~----n~l~~~ 242 (361)
.+++.....+ ..+++|++|.++.|.+++.....+...+++|+.|+++ + +.++..
T Consensus 339 ~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~ 418 (594)
T 2p1m_B 339 DLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLE 418 (594)
T ss_dssp TCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCC
T ss_pred CCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCC
Confidence 1111100011 1245555555555555433333343346666777666 2 334321
Q ss_pred -----ccccccCCCCCCEEeccCCcCCccchhhhhc-CCCCCEEECcCCcccccCCCCC-CCcCcceeecccccccc
Q 042011 243 -----MFSRNFNLTNLEWLQLGGNRFVGEIPQSLSK-CSSLEGLYLNNNSLSGNVNVPS-SPANTLFNLSQNSRRFT 312 (361)
Q Consensus 243 -----~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~l~~N~l~~~~~~~~-~~~~~L~~l~l~~N~~~ 312 (361)
.+..+..+++|+.|++++ .+++..+..+.. +++|+.|++++|.+++..+..+ ..+++|++|++++|+++
T Consensus 419 ~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~ 494 (594)
T 2p1m_B 419 PLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFG 494 (594)
T ss_dssp CTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCC
T ss_pred chhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCc
Confidence 111233455555555544 444333334433 5566666666666554332222 34556666666666653
No 94
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.89 E-value=2e-22 Score=182.20 Aligned_cols=242 Identities=16% Similarity=0.101 Sum_probs=169.5
Q ss_pred CeEeCCCccccCcCChhhhhccCCCCeEeCcCCcccccCCcccccCCCCCcEEEccCCCcccccccccccccCcccccEE
Q 042011 5 RILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLIAPNFQLNSL 84 (361)
Q Consensus 5 ~~L~L~~n~i~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L 84 (361)
++++-++++++ .||. .+ .+++++|+|++|+|+ .++..+|.++++|++|+|++|.+.+.++.. .|..+.+++++
T Consensus 12 ~~v~C~~~~Lt-~iP~-~l--~~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~--~f~~L~~l~~~ 84 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPS-DL--PRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEAD--VFSNLPKLHEI 84 (350)
T ss_dssp TEEEEESTTCC-SCCT-TC--CTTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECTT--SBCSCTTCCEE
T ss_pred CEEEecCCCCC-ccCc-Cc--CCCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccChh--Hhhcchhhhhh
Confidence 56788888998 8997 33 468999999999998 788678999999999999999986544432 14455566654
Q ss_pred eccCCCCCCCCCchhhcCCCCccEEEecCCcccCCcChHHHhcCCCCcEEEecC-CcccCCCCCCcCCCC-CcCEEEccC
Q 042011 85 SLSSDYGDGFIFPKFLYHQHDLALVDLSHIKMNGEFPTWLLENNTKLETLFLVN-DSLTGPFRLPIHSHR-WLEFLDISN 162 (361)
Q Consensus 85 ~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~l~-~L~~L~l~~ 162 (361)
....+|.+....+..|..+++|++|++++|.+. .++...+....++..+++.+ +++....+..|..+. .++.|++++
T Consensus 85 l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~ 163 (350)
T 4ay9_X 85 RIEKANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK 163 (350)
T ss_dssp EEEEETTCCEECTTSBCCCTTCCEEEEEEECCS-SCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCS
T ss_pred hcccCCcccccCchhhhhccccccccccccccc-cCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccc
Confidence 332677888777788888888888888888887 44443355566677777755 556555555666554 577788888
Q ss_pred CcCCccCChhhhccCCCccEEEecC-CccccccCccccCCCCCCEEeccCCcCccccchhhhhCCCCCcEEEeecCCCCC
Q 042011 163 NNFRCHIPVEIGDILPSLKFFNISM-NALDGSIPSSFGNMNFLRVLDLSNNQLTGEIPEHLAVGCVNLESLALSNNSLEG 241 (361)
Q Consensus 163 n~l~~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~ 241 (361)
|+++ .++...+. ..+|+++++++ |.++...+..|..+++|++|++++|+++ .+|... +.+|+.|.+.++.--.
T Consensus 164 N~i~-~i~~~~f~-~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~-~lp~~~---~~~L~~L~~l~~~~l~ 237 (350)
T 4ay9_X 164 NGIQ-EIHNSAFN-GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYG---LENLKKLRARSTYNLK 237 (350)
T ss_dssp SCCC-EECTTSST-TEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC-CCCSSS---CTTCCEEECTTCTTCC
T ss_pred cccc-CCChhhcc-ccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC-ccChhh---hccchHhhhccCCCcC
Confidence 8887 77777765 56788888864 5555333456777888888888888887 777643 4556666655543222
Q ss_pred cccccccCCCCCCEEeccCC
Q 042011 242 HMFSRNFNLTNLEWLQLGGN 261 (361)
Q Consensus 242 ~~~~~~~~~~~L~~L~L~~n 261 (361)
..| .+..+++|+.+++.++
T Consensus 238 ~lP-~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 238 KLP-TLEKLVALMEASLTYP 256 (350)
T ss_dssp CCC-CTTTCCSCCEEECSCH
T ss_pred cCC-CchhCcChhhCcCCCC
Confidence 233 3567777777777654
No 95
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.88 E-value=3.1e-22 Score=168.81 Aligned_cols=165 Identities=22% Similarity=0.204 Sum_probs=136.7
Q ss_pred cCEEEccCCcCCccCChhhhccCCCccEEEecCCccccccC-ccccCCCCCCEEeccCCcCccccchhhhhCCCCCcEEE
Q 042011 155 LEFLDISNNNFRCHIPVEIGDILPSLKFFNISMNALDGSIP-SSFGNMNFLRVLDLSNNQLTGEIPEHLAVGCVNLESLA 233 (361)
Q Consensus 155 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ 233 (361)
-+.+++++|.++ .+|..+. +.+++|++++|.+++..+ ..|..+++|++|++++|.++ .++...+..+++|++|+
T Consensus 13 ~~~l~~s~n~l~-~iP~~~~---~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~ 87 (220)
T 2v70_A 13 GTTVDCSNQKLN-KIPEHIP---QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEIL 87 (220)
T ss_dssp TTEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEE
T ss_pred CCEeEeCCCCcc-cCccCCC---CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCC-EECHHHhCCCCCCCEEE
Confidence 357888888887 7776554 367888888888885544 45788888999999999888 66665555888999999
Q ss_pred eecCCCCCcccccccCCCCCCEEeccCCcCCccchhhhhcCCCCCEEECcCCcccccCCCCCCCcCcceeeccccccccC
Q 042011 234 LSNNSLEGHMFSRNFNLTNLEWLQLGGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGNVNVPSSPANTLFNLSQNSRRFTS 313 (361)
Q Consensus 234 L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~ 313 (361)
+++|.+++..+..+..+++|+.|++++|++++..|..|..+++|+.|++++|++++..|..|..+++|+.|++++|+|.|
T Consensus 88 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 88 LTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp CCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred CCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence 99999988878888889999999999999998888889999999999999999998888889999999999999999999
Q ss_pred Ccccccccccc
Q 042011 314 SISHSHLLNLH 324 (361)
Q Consensus 314 ~~~~~~~~~~~ 324 (361)
+++..++..|.
T Consensus 168 ~c~l~~l~~~~ 178 (220)
T 2v70_A 168 NCYLAWLGEWL 178 (220)
T ss_dssp SGGGHHHHHHH
T ss_pred CCchHHHHHHH
Confidence 88877665543
No 96
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.88 E-value=2.4e-24 Score=208.39 Aligned_cols=304 Identities=16% Similarity=0.118 Sum_probs=185.0
Q ss_pred CCCCCeEeCCCc-cccCc-CChhhhhccCCCCeEeCcCCcccccCCc---ccccCCCCCcEEEccCCC--cccccccccc
Q 042011 1 MTSLRILDVSSN-QLTGS-ISSSPLVHLTSIEELMLSNNHFQIPISL---EPLFNHSRLKIFYADNNE--LNAEITQSHS 73 (361)
Q Consensus 1 l~~L~~L~L~~n-~i~~~-i~~~~~~~l~~L~~L~Ls~n~l~~~~~~---~~~~~l~~L~~L~l~~n~--~~~~~~~~~~ 73 (361)
+++|++|++++| .+++. ++. .+.++++|++|++++|.+++..+. .....+++|++|++++|. +.. ..+.
T Consensus 129 ~~~L~~L~L~~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~---~~l~ 204 (594)
T 2p1m_B 129 FKNFKVLVLSSCEGFSTDGLAA-IAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSF---SALE 204 (594)
T ss_dssp CTTCCEEEEESCEEEEHHHHHH-HHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCH---HHHH
T ss_pred CCCCcEEeCCCcCCCCHHHHHH-HHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCH---HHHH
Confidence 467788888777 45422 333 455777888888888776532210 122356677777777775 211 1100
Q ss_pred c-ccCcccccEEeccCCC-CCC-------------------------------------------------C----CCch
Q 042011 74 L-IAPNFQLNSLSLSSDY-GDG-------------------------------------------------F----IFPK 98 (361)
Q Consensus 74 ~-~~~~~~L~~L~l~~~~-~~~-------------------------------------------------~----~~~~ 98 (361)
. ...+.+|++|++ .++ .+. . ..+.
T Consensus 205 ~l~~~~~~L~~L~L-~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~ 283 (594)
T 2p1m_B 205 RLVTRCPNLKSLKL-NRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPA 283 (594)
T ss_dssp HHHHHCTTCCEEEC-CTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGG
T ss_pred HHHHhCCCCcEEec-CCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHH
Confidence 0 112345666666 333 111 0 1122
Q ss_pred hhcCCCCccEEEecCCcccCCcChHHHhcCCCCcEEEecCCcccCC-CCCCcCCCCCcCEEEcc---------CCcCCcc
Q 042011 99 FLYHQHDLALVDLSHIKMNGEFPTWLLENNTKLETLFLVNDSLTGP-FRLPIHSHRWLEFLDIS---------NNNFRCH 168 (361)
Q Consensus 99 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~---------~n~l~~~ 168 (361)
.+..+++|++|++++|.+++.....++..+++|++|++++| +... .+.....+++|++|++. .+.+++.
T Consensus 284 ~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~ 362 (594)
T 2p1m_B 284 VYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQ 362 (594)
T ss_dssp GHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHH
T ss_pred HHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHH
Confidence 22245677777777777653333333556777777777776 3211 11112246778888773 3444432
Q ss_pred CChhhhccCCCccEEEecCCccccccCcccc-CCCCCCEEecc--C----CcCccccc-----hhhhhCCCCCcEEEeec
Q 042011 169 IPVEIGDILPSLKFFNISMNALDGSIPSSFG-NMNFLRVLDLS--N----NQLTGEIP-----EHLAVGCVNLESLALSN 236 (361)
Q Consensus 169 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~-~~~~L~~L~l~--~----n~l~~~~~-----~~~~~~~~~L~~L~L~~ 236 (361)
....+...+++|+.|.++.|.+++.....+. .+++|++|+++ + +.++ ..| ..++..+++|+.|++++
T Consensus 363 ~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~-~~~~~~~~~~l~~~~~~L~~L~L~~ 441 (594)
T 2p1m_B 363 GLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLT-LEPLDIGFGAIVEHCKDLRRLSLSG 441 (594)
T ss_dssp HHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTT-CCCTHHHHHHHHHHCTTCCEEECCS
T ss_pred HHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCccccc-CCchhhHHHHHHhhCCCccEEeecC
Confidence 2333344478899998888888755444443 57889999998 3 4454 222 12234688999999977
Q ss_pred CCCCCcccccccC-CCCCCEEeccCCcCCccchhhh-hcCCCCCEEECcCCcccccCCC-CCCCcCcceeecccccccc
Q 042011 237 NSLEGHMFSRNFN-LTNLEWLQLGGNRFVGEIPQSL-SKCSSLEGLYLNNNSLSGNVNV-PSSPANTLFNLSQNSRRFT 312 (361)
Q Consensus 237 n~l~~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~l~~N~l~~~~~~-~~~~~~~L~~l~l~~N~~~ 312 (361)
.+++.....+.. +++|+.|++++|.+++..+..+ ..+++|+.|++++|.+++.... ....+++|++|++++|+++
T Consensus 442 -~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 442 -LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp -SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred -cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence 666544455544 7889999999999876655555 6689999999999998654333 3455789999999998874
No 97
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.88 E-value=5.6e-22 Score=167.21 Aligned_cols=163 Identities=22% Similarity=0.261 Sum_probs=129.3
Q ss_pred CEEEccCCcCCccCChhhhccCCCccEEEecCCccccccCccccCCCCCCEEeccCCcCccccchhhhhCCCCCcEEEee
Q 042011 156 EFLDISNNNFRCHIPVEIGDILPSLKFFNISMNALDGSIPSSFGNMNFLRVLDLSNNQLTGEIPEHLAVGCVNLESLALS 235 (361)
Q Consensus 156 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~ 235 (361)
+.++.+++.++ .+|..+. ++++.|++++|.+++..+..|..+++|++|++++|.++ .++...+..+++|++|+++
T Consensus 14 ~~v~c~~~~l~-~iP~~l~---~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~-~~~~~~~~~l~~L~~L~Ls 88 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP---ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLY 88 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC---TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCC-EECTTTTTTCSSCCEEECC
T ss_pred CEEEcCCCCcC-cCCCccC---cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCC-CcCHHHhhCCcCCCEEECC
Confidence 56777778777 7776553 47888888888888666667888888888888888887 4533334478888888888
Q ss_pred cCCCCCcccccccCCCCCCEEeccCCcCCccchhhhhcCCCCCEEECcCCcccccCCCCCCCcCcceeeccccccccCCc
Q 042011 236 NNSLEGHMFSRNFNLTNLEWLQLGGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGNVNVPSSPANTLFNLSQNSRRFTSSI 315 (361)
Q Consensus 236 ~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~ 315 (361)
+|+++...+..|..+++|+.|++++|++++..+..|..+++|+.|++++|++++..+..|..+++|++|++++|+|.|++
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 168 (220)
T 2v9t_B 89 GNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDC 168 (220)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSG
T ss_pred CCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCC
Confidence 88888776667788888888888888888777888888889999999999988877777888888999999999998888
Q ss_pred cccccccc
Q 042011 316 SHSHLLNL 323 (361)
Q Consensus 316 ~~~~~~~~ 323 (361)
...++..|
T Consensus 169 ~l~~l~~~ 176 (220)
T 2v9t_B 169 HLKWLADY 176 (220)
T ss_dssp GGHHHHHH
T ss_pred ccHHHHHH
Confidence 76666544
No 98
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.88 E-value=7.8e-22 Score=178.31 Aligned_cols=200 Identities=16% Similarity=0.062 Sum_probs=89.8
Q ss_pred CeEeCcCCcccccCCcccccCCCCCcEEEccCCCcccccccccccccCcccccEEeccCCCCCCCC-CchhhcCCCCccE
Q 042011 30 EELMLSNNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLIAPNFQLNSLSLSSDYGDGFI-FPKFLYHQHDLAL 108 (361)
Q Consensus 30 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~l~~l~~L~~ 108 (361)
++++.++++++ .+|. .+ .+++++|+|++|+++...+.. |..+.+|++|++ ++|.+.+. .+..|.+++++++
T Consensus 12 ~~v~C~~~~Lt-~iP~-~l--~~~l~~L~Ls~N~i~~i~~~~---f~~l~~L~~L~L-s~N~i~~~i~~~~f~~L~~l~~ 83 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPS-DL--PRNAIELRFVLTKLRVIQKGA---FSGFGDLEKIEI-SQNDVLEVIEADVFSNLPKLHE 83 (350)
T ss_dssp TEEEEESTTCC-SCCT-TC--CTTCSEEEEESCCCSEECTTS---STTCTTCCEEEE-ECCTTCCEECTTSBCSCTTCCE
T ss_pred CEEEecCCCCC-ccCc-Cc--CCCCCEEEccCCcCCCcCHHH---HcCCCCCCEEEC-cCCCCCCccChhHhhcchhhhh
Confidence 56778888887 7773 33 356788888888776443322 333444555555 44443322 2233444444333
Q ss_pred -EEecCCcccCCcChHHHhcCCCCcEEEecCCcccCCCCCCcCCCCCcCEEEccC-CcCCccCChhhhccC-CCccEEEe
Q 042011 109 -VDLSHIKMNGEFPTWLLENNTKLETLFLVNDSLTGPFRLPIHSHRWLEFLDISN-NNFRCHIPVEIGDIL-PSLKFFNI 185 (361)
Q Consensus 109 -L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~l-~~L~~L~L 185 (361)
+.++.|+++ .++...|.++++|++|++++|++....+..+....++..+++.+ +.+. .++...+..+ ..++.|++
T Consensus 84 ~l~~~~N~l~-~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~-~l~~~~f~~~~~~l~~L~L 161 (350)
T 4ay9_X 84 IRIEKANNLL-YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIH-TIERNSFVGLSFESVILWL 161 (350)
T ss_dssp EEEEEETTCC-EECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCC-EECTTSSTTSBSSCEEEEC
T ss_pred hhcccCCccc-ccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccc-cccccchhhcchhhhhhcc
Confidence 233334444 33222244444455555544444443333333333444444432 2333 3333322222 23444444
Q ss_pred cCCccccccCccccCCCCCCEEeccC-CcCccccchhhhhCCCCCcEEEeecCCCCC
Q 042011 186 SMNALDGSIPSSFGNMNFLRVLDLSN-NQLTGEIPEHLAVGCVNLESLALSNNSLEG 241 (361)
Q Consensus 186 ~~n~l~~~~~~~l~~~~~L~~L~l~~-n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~ 241 (361)
++|.++ .++.......+++++++.+ |.++ .+|...+..+++|++|++++|+++.
T Consensus 162 ~~N~i~-~i~~~~f~~~~L~~l~l~~~n~l~-~i~~~~f~~l~~L~~LdLs~N~l~~ 216 (350)
T 4ay9_X 162 NKNGIQ-EIHNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIHS 216 (350)
T ss_dssp CSSCCC-EECTTSSTTEEEEEEECTTCTTCC-CCCTTTTTTEECCSEEECTTSCCCC
T ss_pred cccccc-CCChhhccccchhHHhhccCCccc-CCCHHHhccCcccchhhcCCCCcCc
Confidence 444444 2222222333444444432 2333 4444443344444444444444444
No 99
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.87 E-value=3e-21 Score=163.80 Aligned_cols=164 Identities=20% Similarity=0.190 Sum_probs=144.5
Q ss_pred CcCEEEccCCcCCccCChhhhccCCCccEEEecCCccccccCccccCCCCCCEEeccCCcCccccchhhhhCCCCCcEEE
Q 042011 154 WLEFLDISNNNFRCHIPVEIGDILPSLKFFNISMNALDGSIPSSFGNMNFLRVLDLSNNQLTGEIPEHLAVGCVNLESLA 233 (361)
Q Consensus 154 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ 233 (361)
..+.++.++++++ .+|..+. ++|++|++++|.+++..+..|..+++|++|++++|.+. .++...+..+++|++|+
T Consensus 20 s~~~v~c~~~~l~-~ip~~~~---~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~ 94 (229)
T 3e6j_A 20 SGTTVDCRSKRHA-SVPAGIP---TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLD 94 (229)
T ss_dssp ETTEEECTTSCCS-SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEE
T ss_pred eCCEeEccCCCcC-ccCCCCC---CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCC-CcChhhcccCCCcCEEE
Confidence 4677899999987 8887654 68999999999999877888999999999999999998 88877766899999999
Q ss_pred eecCCCCCcccccccCCCCCCEEeccCCcCCccchhhhhcCCCCCEEECcCCcccccCCCCCCCcCcceeeccccccccC
Q 042011 234 LSNNSLEGHMFSRNFNLTNLEWLQLGGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGNVNVPSSPANTLFNLSQNSRRFTS 313 (361)
Q Consensus 234 L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~ 313 (361)
+++|++++..+..+..+++|+.|++++|+++ .+|..+..+++|+.|++++|++++..+..+..+++|+.|++.+|++.|
T Consensus 95 Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 95 LGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred CCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 9999999987778889999999999999999 778889999999999999999998777889999999999999999999
Q ss_pred Ccc-ccccccc
Q 042011 314 SIS-HSHLLNL 323 (361)
Q Consensus 314 ~~~-~~~~~~~ 323 (361)
.++ ..++..|
T Consensus 174 ~c~~~~~l~~~ 184 (229)
T 3e6j_A 174 ECRDIMYLRNW 184 (229)
T ss_dssp TBGGGHHHHHH
T ss_pred CcchhHHHHHH
Confidence 886 3344433
No 100
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.86 E-value=2.8e-21 Score=161.57 Aligned_cols=180 Identities=23% Similarity=0.241 Sum_probs=101.7
Q ss_pred cEEEecCCcccCCcChHHHhcCCCCcEEEecCCcccCCCCCCcCCCCCcCEEEccCCcCCccCChhhhccCCCccEEEec
Q 042011 107 ALVDLSHIKMNGEFPTWLLENNTKLETLFLVNDSLTGPFRLPIHSHRWLEFLDISNNNFRCHIPVEIGDILPSLKFFNIS 186 (361)
Q Consensus 107 ~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~ 186 (361)
+.++.+++.++ .+|..+ .+++++|++++|++.+..+..+..+++|++|++++|+++ .++...+..+++|++|+++
T Consensus 10 ~~v~c~~~~l~-~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls 84 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGI---PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLS 84 (208)
T ss_dssp TEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred CEEEecCCCcc-CCCCCC---CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC-ccChhhcCCCCCcCEEECC
Confidence 45555665555 444331 345666666666666544455566666666666666665 4554444445666666666
Q ss_pred CCccccccCccccCCCCCCEEeccCCcCccccchhhhhCCCCCcEEEeecCCCCCcccccccCCCCCCEEeccCCcCCcc
Q 042011 187 MNALDGSIPSSFGNMNFLRVLDLSNNQLTGEIPEHLAVGCVNLESLALSNNSLEGHMFSRNFNLTNLEWLQLGGNRFVGE 266 (361)
Q Consensus 187 ~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~ 266 (361)
+|.+++..+..|..+++|++|++++|.++ .++...+..+++|++|++++|++++..+..+..+++|+.|++++|.+.+
T Consensus 85 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~- 162 (208)
T 2o6s_A 85 TNQLQSLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC- 162 (208)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-
T ss_pred CCcCCccCHhHhcCccCCCEEEcCCCcCc-ccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-
Confidence 66665444444556666666666666665 4444433355666666666666655444445556666666666665542
Q ss_pred chhhhhcCCCCCEEECcCCcccccCCCCCCCcC
Q 042011 267 IPQSLSKCSSLEGLYLNNNSLSGNVNVPSSPAN 299 (361)
Q Consensus 267 ~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~ 299 (361)
.+++|+.|+++.|++++.+|..+..++
T Consensus 163 ------~~~~l~~L~~~~n~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 163 ------TCPGIRYLSEWINKHSGVVRNSAGSVA 189 (208)
T ss_dssp ------CTTTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred ------CCCCHHHHHHHHHhCCceeeccCcccc
Confidence 234556666666666666665554443
No 101
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.85 E-value=2.7e-21 Score=175.50 Aligned_cols=162 Identities=24% Similarity=0.174 Sum_probs=101.9
Q ss_pred cCEEEccCCcCCccCChhhhc-cCCCccEEEecCCccccccCccccCCCCCCEEeccCCcCccccchhhhhCCCCCcEEE
Q 042011 155 LEFLDISNNNFRCHIPVEIGD-ILPSLKFFNISMNALDGSIPSSFGNMNFLRVLDLSNNQLTGEIPEHLAVGCVNLESLA 233 (361)
Q Consensus 155 L~~L~l~~n~l~~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ 233 (361)
++.|++++|+++ .++...+. .+++|+.|++++|.+++..+..|..+++|++|++++|.++ .++...+..+++|++|+
T Consensus 41 l~~L~Ls~N~l~-~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~ 118 (361)
T 2xot_A 41 TALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLL 118 (361)
T ss_dssp CSEEECCSSCCC-EECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEE
T ss_pred CCEEECCCCCCC-ccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCC-cCCHHHhCCCcCCCEEE
Confidence 555666666665 44444332 3566666666666666555555666666666666666666 55554444666777777
Q ss_pred eecCCCCCcccccccCCCCCCEEeccCCcCCccchhhh---hcCCCCCEEECcCCcccccCCCCCCCcCc--ceeecccc
Q 042011 234 LSNNSLEGHMFSRNFNLTNLEWLQLGGNRFVGEIPQSL---SKCSSLEGLYLNNNSLSGNVNVPSSPANT--LFNLSQNS 308 (361)
Q Consensus 234 L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~---~~l~~L~~L~l~~N~l~~~~~~~~~~~~~--L~~l~l~~ 308 (361)
+++|++++..+..|..+++|+.|+|++|++++..+..| ..+++|+.|++++|+|++..+..+..++. ++.|++.+
T Consensus 119 L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~ 198 (361)
T 2xot_A 119 LYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHN 198 (361)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCS
T ss_pred CCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecC
Confidence 77777766666666777777777777777775444444 45677777777777777554445555555 36788888
Q ss_pred ccccCCcccc
Q 042011 309 RRFTSSISHS 318 (361)
Q Consensus 309 N~~~~~~~~~ 318 (361)
|+|.|++...
T Consensus 199 N~~~C~C~l~ 208 (361)
T 2xot_A 199 NPLECDCKLY 208 (361)
T ss_dssp SCEECCHHHH
T ss_pred CCccCCcCcH
Confidence 8888777643
No 102
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.84 E-value=4.6e-20 Score=154.15 Aligned_cols=175 Identities=23% Similarity=0.245 Sum_probs=145.7
Q ss_pred CcEEEecCCcccCCCCCCcCCCCCcCEEEccCCcCCccCChhhhccCCCccEEEecCCccccccCccccCCCCCCEEecc
Q 042011 131 LETLFLVNDSLTGPFRLPIHSHRWLEFLDISNNNFRCHIPVEIGDILPSLKFFNISMNALDGSIPSSFGNMNFLRVLDLS 210 (361)
Q Consensus 131 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~ 210 (361)
-+.++.+++.+.. +|..+ .+++++|++++|+++ .++...+..+++|++|++++|.+++..+..|..+++|++|+++
T Consensus 9 ~~~v~c~~~~l~~-~p~~~--~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls 84 (208)
T 2o6s_A 9 GTTVECYSQGRTS-VPTGI--PAQTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLS 84 (208)
T ss_dssp TTEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEecCCCccC-CCCCC--CCCCcEEEcCCCccC-cCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECC
Confidence 3567777777764 34333 458999999999998 6777666668999999999999986666678899999999999
Q ss_pred CCcCccccchhhhhCCCCCcEEEeecCCCCCcccccccCCCCCCEEeccCCcCCccchhhhhcCCCCCEEECcCCccccc
Q 042011 211 NNQLTGEIPEHLAVGCVNLESLALSNNSLEGHMFSRNFNLTNLEWLQLGGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGN 290 (361)
Q Consensus 211 ~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 290 (361)
+|.++ .++...+..+++|++|++++|++++..+..+..+++|+.|++++|++++..+..+..+++|+.|++++|.+.+
T Consensus 85 ~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~- 162 (208)
T 2o6s_A 85 TNQLQ-SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC- 162 (208)
T ss_dssp SSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-
T ss_pred CCcCC-ccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-
Confidence 99998 6776665589999999999999998777778899999999999999997777778889999999999998764
Q ss_pred CCCCCCCcCcceeeccccccccCCccc
Q 042011 291 VNVPSSPANTLFNLSQNSRRFTSSISH 317 (361)
Q Consensus 291 ~~~~~~~~~~L~~l~l~~N~~~~~~~~ 317 (361)
.++.|++|++..|.+++.+|.
T Consensus 163 ------~~~~l~~L~~~~n~~~g~ip~ 183 (208)
T 2o6s_A 163 ------TCPGIRYLSEWINKHSGVVRN 183 (208)
T ss_dssp ------CTTTTHHHHHHHHHCTTTBBC
T ss_pred ------CCCCHHHHHHHHHhCCceeec
Confidence 356889999999999998885
No 103
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.84 E-value=2.4e-20 Score=164.07 Aligned_cols=175 Identities=20% Similarity=0.252 Sum_probs=124.6
Q ss_pred hcCCCCccEEEecCCcccCCcChHHHhcCCCCcEEEecCCcccCCCCCCcCCCCCcCEEEccCCcCCccCChhhhccCCC
Q 042011 100 LYHQHDLALVDLSHIKMNGEFPTWLLENNTKLETLFLVNDSLTGPFRLPIHSHRWLEFLDISNNNFRCHIPVEIGDILPS 179 (361)
Q Consensus 100 l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 179 (361)
+..+++|+.|++++|.+. .++. +..+++|++|++++|++++..+ +..+++|++|++++|.++ .++. +. .+++
T Consensus 42 ~~~l~~L~~L~l~~~~i~-~~~~--~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~-~~~~-l~-~l~~ 113 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVK-DLSS-LK-DLKK 113 (291)
T ss_dssp HHHHHTCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CGGG-GT-TCTT
T ss_pred hhhcCcccEEEccCCCcc-cChh--HhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCC-CChh-hc-cCCC
Confidence 445677777777777776 4443 5677777778887777775433 777777888888888776 4443 33 3778
Q ss_pred ccEEEecCCccccccCccccCCCCCCEEeccCCcCccccchhhhhCCCCCcEEEeecCCCCCcccccccCCCCCCEEecc
Q 042011 180 LKFFNISMNALDGSIPSSFGNMNFLRVLDLSNNQLTGEIPEHLAVGCVNLESLALSNNSLEGHMFSRNFNLTNLEWLQLG 259 (361)
Q Consensus 180 L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~ 259 (361)
|++|++++|.+++ + ..+..+++|++|++++|.++ .++ .+ ..+++|++|++++|++++..+ +..+++|+.|+++
T Consensus 114 L~~L~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~-~~~-~l-~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~ 186 (291)
T 1h6t_A 114 LKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKIT-DIT-VL-SRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLS 186 (291)
T ss_dssp CCEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCC-CCG-GG-GGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECC
T ss_pred CCEEECCCCcCCC-C-hhhcCCCCCCEEEccCCcCC-cch-hh-ccCCCCCEEEccCCccccchh--hcCCCccCEEECC
Confidence 8888888887774 3 35677788888888888877 442 33 367888888888888877544 7778888888888
Q ss_pred CCcCCccchhhhhcCCCCCEEECcCCcccccC
Q 042011 260 GNRFVGEIPQSLSKCSSLEGLYLNNNSLSGNV 291 (361)
Q Consensus 260 ~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 291 (361)
+|++++. + .+..+++|+.|++++|+++...
T Consensus 187 ~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~~~ 216 (291)
T 1h6t_A 187 KNHISDL-R-ALAGLKNLDVLELFSQECLNKP 216 (291)
T ss_dssp SSCCCBC-G-GGTTCTTCSEEEEEEEEEECCC
T ss_pred CCcCCCC-h-hhccCCCCCEEECcCCcccCCc
Confidence 8888753 3 3777888888888888887533
No 104
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.84 E-value=3.8e-20 Score=162.79 Aligned_cols=191 Identities=21% Similarity=0.264 Sum_probs=159.4
Q ss_pred CccEEEecCCcccCCcChHHHhcCCCCcEEEecCCcccCCCCCCcCCCCCcCEEEccCCcCCccCChhhhccCCCccEEE
Q 042011 105 DLALVDLSHIKMNGEFPTWLLENNTKLETLFLVNDSLTGPFRLPIHSHRWLEFLDISNNNFRCHIPVEIGDILPSLKFFN 184 (361)
Q Consensus 105 ~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 184 (361)
.+..+.+..+.+++..+ ...+++|++|++++|.+... ..+..+++|++|++++|+++ .++. + ..+++|++|+
T Consensus 25 ~~~~~~l~~~~~~~~~~---~~~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~-~~~~-l-~~l~~L~~L~ 96 (291)
T 1h6t_A 25 ETIKDNLKKKSVTDAVT---QNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLT-DIKP-L-ANLKNLGWLF 96 (291)
T ss_dssp HHHHHHTTCSCTTSEEC---HHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCC-CCGG-G-TTCTTCCEEE
T ss_pred HHHHHHhcCCCcccccc---hhhcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccC-CCcc-c-ccCCCCCEEE
Confidence 34444566666664333 45788999999999999864 34888999999999999998 5655 4 4489999999
Q ss_pred ecCCccccccCccccCCCCCCEEeccCCcCccccchhhhhCCCCCcEEEeecCCCCCcccccccCCCCCCEEeccCCcCC
Q 042011 185 ISMNALDGSIPSSFGNMNFLRVLDLSNNQLTGEIPEHLAVGCVNLESLALSNNSLEGHMFSRNFNLTNLEWLQLGGNRFV 264 (361)
Q Consensus 185 L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~ 264 (361)
+++|.+++ ++ .+..+++|++|++++|.++ .++ .+. .+++|+.|++++|++++. ..+..+++|+.|++++|+++
T Consensus 97 l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~-~~~-~l~-~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~ 169 (291)
T 1h6t_A 97 LDENKVKD-LS-SLKDLKKLKSLSLEHNGIS-DIN-GLV-HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS 169 (291)
T ss_dssp CCSSCCCC-GG-GGTTCTTCCEEECTTSCCC-CCG-GGG-GCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC
T ss_pred CCCCcCCC-Ch-hhccCCCCCEEECCCCcCC-CCh-hhc-CCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccc
Confidence 99999984 44 4899999999999999998 554 343 799999999999999985 67889999999999999999
Q ss_pred ccchhhhhcCCCCCEEECcCCcccccCCCCCCCcCcceeeccccccccCC
Q 042011 265 GEIPQSLSKCSSLEGLYLNNNSLSGNVNVPSSPANTLFNLSQNSRRFTSS 314 (361)
Q Consensus 265 ~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~ 314 (361)
+..+ +..+++|+.|++++|++++. + .+..+++|+.|++++|+++..
T Consensus 170 ~~~~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 170 DIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp CCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEECC
T ss_pred cchh--hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCcccCC
Confidence 6654 88999999999999999974 3 488999999999999999863
No 105
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.84 E-value=7.3e-20 Score=174.24 Aligned_cols=187 Identities=21% Similarity=0.259 Sum_probs=144.1
Q ss_pred CCCeEeCcCCcccccCCcccccCCCCCcEEEccCCCcccccccccccccCcccccEEeccCCCCCCCCCchhhcCCCCcc
Q 042011 28 SIEELMLSNNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLIAPNFQLNSLSLSSDYGDGFIFPKFLYHQHDLA 107 (361)
Q Consensus 28 ~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~ 107 (361)
+++.|++++|+++ .+|.. + .++|++|++++|.++.. + ..+.+|++|++ ++|.+++ +|. +.. +|+
T Consensus 60 ~L~~L~Ls~n~L~-~lp~~-l--~~~L~~L~Ls~N~l~~i-p------~~l~~L~~L~L-s~N~l~~-ip~-l~~--~L~ 123 (571)
T 3cvr_A 60 QFSELQLNRLNLS-SLPDN-L--PPQITVLEITQNALISL-P------ELPASLEYLDA-CDNRLST-LPE-LPA--SLK 123 (571)
T ss_dssp TCSEEECCSSCCS-CCCSC-C--CTTCSEEECCSSCCSCC-C------CCCTTCCEEEC-CSSCCSC-CCC-CCT--TCC
T ss_pred CccEEEeCCCCCC-ccCHh-H--cCCCCEEECcCCCCccc-c------cccCCCCEEEc-cCCCCCC-cch-hhc--CCC
Confidence 8888888888887 47732 3 37788888888888743 2 12358888888 8888876 454 544 889
Q ss_pred EEEecCCcccCCcChHHHhcCCCCcEEEecCCcccCCCCCCcCCCCCcCEEEccCCcCCccCChhhhccCCCccEEEecC
Q 042011 108 LVDLSHIKMNGEFPTWLLENNTKLETLFLVNDSLTGPFRLPIHSHRWLEFLDISNNNFRCHIPVEIGDILPSLKFFNISM 187 (361)
Q Consensus 108 ~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~ 187 (361)
+|++++|.+++ +|. .+++|++|++++|.+++ +|. .+++|++|++++|+++ .+|. +. ++|+.|++++
T Consensus 124 ~L~Ls~N~l~~-lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~-~lp~-l~---~~L~~L~Ls~ 189 (571)
T 3cvr_A 124 HLDVDNNQLTM-LPE----LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLT-FLPE-LP---ESLEALDVST 189 (571)
T ss_dssp EEECCSSCCSC-CCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-CCCC-CC---TTCCEEECCS
T ss_pred EEECCCCcCCC-CCC----cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCC-Ccch-hh---CCCCEEECcC
Confidence 99999999884 665 57889999999998886 444 5678999999999998 5776 33 7899999999
Q ss_pred CccccccCccccCCCCC-------CEEeccCCcCccccchhhhhCCCCCcEEEeecCCCCCcccccccCC
Q 042011 188 NALDGSIPSSFGNMNFL-------RVLDLSNNQLTGEIPEHLAVGCVNLESLALSNNSLEGHMFSRNFNL 250 (361)
Q Consensus 188 n~l~~~~~~~l~~~~~L-------~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~ 250 (361)
|.++ .+|. +.. +| +.|++++|.++ .+|..++ .+++|+.|++++|.+++..|..+..+
T Consensus 190 N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~-~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 190 NLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENIL-SLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp SCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGG-GSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred CCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHh-cCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 9988 6666 544 67 99999999998 8888887 59999999999999988777776654
No 106
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.83 E-value=5.6e-20 Score=176.78 Aligned_cols=169 Identities=20% Similarity=0.249 Sum_probs=85.5
Q ss_pred cccccEEeccCCCCCCCCCchhhcCCCCccEEEecCCcccCCcChHHHhcCCCCcEEEecCCcccCCCCCCcCCCCCcCE
Q 042011 78 NFQLNSLSLSSDYGDGFIFPKFLYHQHDLALVDLSHIKMNGEFPTWLLENNTKLETLFLVNDSLTGPFRLPIHSHRWLEF 157 (361)
Q Consensus 78 ~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 157 (361)
+.+|+.|++ .++.+... + .+..+++|+.|++++|.+++ ++. +..+++|+.|++++|.+.+ +..+..+++|+.
T Consensus 42 L~~L~~L~l-~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~-~~~--l~~l~~L~~L~Ls~N~l~~--l~~l~~l~~L~~ 113 (605)
T 1m9s_A 42 LNSIDQIIA-NNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTD-IKP--LTNLKNLGWLFLDENKIKD--LSSLKDLKKLKS 113 (605)
T ss_dssp HTTCCCCBC-TTCCCCCC-T-TGGGCTTCCEEECTTSCCCC-CGG--GGGCTTCCEEECCSSCCCC--CTTSTTCTTCCE
T ss_pred CCCCCEEEC-cCCCCCCC-h-HHccCCCCCEEEeeCCCCCC-Chh--hccCCCCCEEECcCCCCCC--ChhhccCCCCCE
Confidence 335555566 55555432 1 35555666666666665552 322 4555556666666555553 124555555555
Q ss_pred EEccCCcCCccCChhhhccCCCccEEEecCCccccccCccccCCCCCCEEeccCCcCccccchhhhhCCCCCcEEEeecC
Q 042011 158 LDISNNNFRCHIPVEIGDILPSLKFFNISMNALDGSIPSSFGNMNFLRVLDLSNNQLTGEIPEHLAVGCVNLESLALSNN 237 (361)
Q Consensus 158 L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n 237 (361)
|++++|++. .++ .+. .+++|+.|+|++|.+++. ..+..+++|+.|++++|.+.+ ++. + ..+++|+.|+|++|
T Consensus 114 L~Ls~N~l~-~l~-~l~-~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~-~~~-l-~~l~~L~~L~Ls~N 185 (605)
T 1m9s_A 114 LSLEHNGIS-DIN-GLV-HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD-IVP-L-AGLTKLQNLYLSKN 185 (605)
T ss_dssp EECTTSCCC-CCG-GGG-GCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCC-CGG-G-TTCTTCCEEECCSS
T ss_pred EEecCCCCC-CCc-ccc-CCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCC-chh-h-ccCCCCCEEECcCC
Confidence 555555555 332 222 255555555555555532 344555555555555555552 222 2 24555555555555
Q ss_pred CCCCcccccccCCCCCCEEeccCCcCC
Q 042011 238 SLEGHMFSRNFNLTNLEWLQLGGNRFV 264 (361)
Q Consensus 238 ~l~~~~~~~~~~~~~L~~L~L~~n~l~ 264 (361)
++++. ..+..+++|+.|+|++|++.
T Consensus 186 ~i~~l--~~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 186 HISDL--RALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp CCCBC--GGGTTCTTCSEEECCSEEEE
T ss_pred CCCCC--hHHccCCCCCEEEccCCcCc
Confidence 55542 23445555555555555544
No 107
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.83 E-value=1e-19 Score=153.26 Aligned_cols=153 Identities=21% Similarity=0.258 Sum_probs=112.4
Q ss_pred cEEEecCCcccCCCCCCcCCCCCcCEEEccCCcCCccCChhhhccCCCccEEEecCCccccccCccccCCCCCCEEeccC
Q 042011 132 ETLFLVNDSLTGPFRLPIHSHRWLEFLDISNNNFRCHIPVEIGDILPSLKFFNISMNALDGSIPSSFGNMNFLRVLDLSN 211 (361)
Q Consensus 132 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~ 211 (361)
+.++.+++.++. +|..+. +.++.|++++|+++ .++...+..+++|++|++++|.+++..|..|..+++|++|++++
T Consensus 14 ~~v~c~~~~l~~-iP~~l~--~~l~~L~l~~n~i~-~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 14 NIVDCRGKGLTE-IPTNLP--ETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp TEEECTTSCCSS-CCSSCC--TTCCEEECCSSCCC-EECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred CEEEcCCCCcCc-CCCccC--cCCCEEECCCCcCC-CcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence 345555555543 333322 45777777777776 55554445577777777777777766677788888888888888
Q ss_pred CcCccccchhhhhCCCCCcEEEeecCCCCCcccccccCCCCCCEEeccCCcCCccchhhhhcCCCCCEEECcCCcccc
Q 042011 212 NQLTGEIPEHLAVGCVNLESLALSNNSLEGHMFSRNFNLTNLEWLQLGGNRFVGEIPQSLSKCSSLEGLYLNNNSLSG 289 (361)
Q Consensus 212 n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 289 (361)
|.++ .+|...+..+++|++|++++|++++..+..+..+++|+.|++++|++++..+..|..+++|+.|++++|.+..
T Consensus 90 N~l~-~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 90 NKIT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp SCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CcCC-ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 8887 7777666678888888888888888777788888888888888888887777778888888888888888764
No 108
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.83 E-value=1e-19 Score=173.19 Aligned_cols=187 Identities=20% Similarity=0.253 Sum_probs=120.5
Q ss_pred CCcEEEccCCCcccccccccccccCcccccEEeccCCCCCCCCCchhhcCCCCccEEEecCCcccCCcChHHHhcCCCCc
Q 042011 53 RLKIFYADNNELNAEITQSHSLIAPNFQLNSLSLSSDYGDGFIFPKFLYHQHDLALVDLSHIKMNGEFPTWLLENNTKLE 132 (361)
Q Consensus 53 ~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~ 132 (361)
+++.|++++|.+++. +..+ ..+|++|++ ++|.++. +| ..+++|++|++++|.+++ +|. +.+ +|+
T Consensus 60 ~L~~L~Ls~n~L~~l-p~~l-----~~~L~~L~L-s~N~l~~-ip---~~l~~L~~L~Ls~N~l~~-ip~--l~~--~L~ 123 (571)
T 3cvr_A 60 QFSELQLNRLNLSSL-PDNL-----PPQITVLEI-TQNALIS-LP---ELPASLEYLDACDNRLST-LPE--LPA--SLK 123 (571)
T ss_dssp TCSEEECCSSCCSCC-CSCC-----CTTCSEEEC-CSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC--CCT--TCC
T ss_pred CccEEEeCCCCCCcc-CHhH-----cCCCCEEEC-cCCCCcc-cc---cccCCCCEEEccCCCCCC-cch--hhc--CCC
Confidence 788888888887753 3221 136777777 7777763 34 346777777777777763 555 222 777
Q ss_pred EEEecCCcccCCCCCCcCCCCCcCEEEccCCcCCccCChhhhccCCCccEEEecCCccccccCccccCCCCCCEEeccCC
Q 042011 133 TLFLVNDSLTGPFRLPIHSHRWLEFLDISNNNFRCHIPVEIGDILPSLKFFNISMNALDGSIPSSFGNMNFLRVLDLSNN 212 (361)
Q Consensus 133 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n 212 (361)
+|++++|++++ +|. .+++|+.|++++|.++ .+|. .+++|+.|++++|.+++ +|. |. ++|++|++++|
T Consensus 124 ~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~-~lp~----~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N 190 (571)
T 3cvr_A 124 HLDVDNNQLTM-LPE---LPALLEYINADNNQLT-MLPE----LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTN 190 (571)
T ss_dssp EEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSS
T ss_pred EEECCCCcCCC-CCC---cCccccEEeCCCCccC-cCCC----cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCC
Confidence 77777777765 343 4567777777777776 4654 25677777777777764 555 44 67777777777
Q ss_pred cCccccchhhhhCCCCC-------cEEEeecCCCCCcccccccCCCCCCEEeccCCcCCccchhhhhcC
Q 042011 213 QLTGEIPEHLAVGCVNL-------ESLALSNNSLEGHMFSRNFNLTNLEWLQLGGNRFVGEIPQSLSKC 274 (361)
Q Consensus 213 ~l~~~~~~~~~~~~~~L-------~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l 274 (361)
.++ .+|. +. . +| +.|++++|+++. +|..+..+++|+.|++++|++++..|..+..+
T Consensus 191 ~L~-~lp~-~~-~--~L~~~~~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 191 LLE-SLPA-VP-V--RNHHSEETEIFFRCRENRITH-IPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp CCS-SCCC-CC-----------CCEEEECCSSCCCC-CCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred CCC-chhh-HH-H--hhhcccccceEEecCCCccee-cCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 777 6665 32 1 45 777777777765 44445557777777777777776666666554
No 109
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.83 E-value=5.2e-20 Score=166.97 Aligned_cols=157 Identities=25% Similarity=0.222 Sum_probs=75.5
Q ss_pred CccEEEecCCcccCCcChHHHh-cCCCCcEEEecCCcccCCCCCCcCCCCCcCEEEccCCcCCccCChhhhccCCCccEE
Q 042011 105 DLALVDLSHIKMNGEFPTWLLE-NNTKLETLFLVNDSLTGPFRLPIHSHRWLEFLDISNNNFRCHIPVEIGDILPSLKFF 183 (361)
Q Consensus 105 ~L~~L~l~~n~l~~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 183 (361)
.++.|++++|.++ .++...+. ++++|++|++++|++.+..+..|..+++|++|++++|+++ .++...+..+++|+.|
T Consensus 40 ~l~~L~Ls~N~l~-~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L 117 (361)
T 2xot_A 40 YTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVL 117 (361)
T ss_dssp TCSEEECCSSCCC-EECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEE
T ss_pred CCCEEECCCCCCC-ccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCC-cCCHHHhCCCcCCCEE
Confidence 3455555555554 22222233 4555555555555555444444555555555555555554 3443333335555555
Q ss_pred EecCCccccccCccccCCCCCCEEeccCCcCccccchhhh---hCCCCCcEEEeecCCCCCcccccccCCCC--CCEEec
Q 042011 184 NISMNALDGSIPSSFGNMNFLRVLDLSNNQLTGEIPEHLA---VGCVNLESLALSNNSLEGHMFSRNFNLTN--LEWLQL 258 (361)
Q Consensus 184 ~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~---~~~~~L~~L~L~~n~l~~~~~~~~~~~~~--L~~L~L 258 (361)
+|++|.+++..+..|..+++|++|++++|.++ .+|...+ ..+++|+.|++++|+++...+..+..++. ++.|++
T Consensus 118 ~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l 196 (361)
T 2xot_A 118 LLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYL 196 (361)
T ss_dssp ECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEEC
T ss_pred ECCCCcccEECHHHhCCcccCCEEECCCCcCC-eeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEe
Confidence 55555555444445555555555555555555 4444433 23445555555555555443344444443 244555
Q ss_pred cCCcCC
Q 042011 259 GGNRFV 264 (361)
Q Consensus 259 ~~n~l~ 264 (361)
++|++.
T Consensus 197 ~~N~~~ 202 (361)
T 2xot_A 197 HNNPLE 202 (361)
T ss_dssp CSSCEE
T ss_pred cCCCcc
Confidence 555443
No 110
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.82 E-value=2.1e-19 Score=151.42 Aligned_cols=155 Identities=23% Similarity=0.254 Sum_probs=112.6
Q ss_pred cEEEecCCcccCCCCCCcCCCCCcCEEEccCCcCCccCChhhhccCCCccEEEecCCccccccCccccCCCCCCEEeccC
Q 042011 132 ETLFLVNDSLTGPFRLPIHSHRWLEFLDISNNNFRCHIPVEIGDILPSLKFFNISMNALDGSIPSSFGNMNFLRVLDLSN 211 (361)
Q Consensus 132 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~ 211 (361)
+.+++++|.++. +|..+. +.+++|++++|++++..+...+..+++|++|++++|.+++..+..|..+++|++|++++
T Consensus 14 ~~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 355666665553 333332 34567777777776333444444577888888888887766666778888888888888
Q ss_pred CcCccccchhhhhCCCCCcEEEeecCCCCCcccccccCCCCCCEEeccCCcCCccchhhhhcCCCCCEEECcCCccccc
Q 042011 212 NQLTGEIPEHLAVGCVNLESLALSNNSLEGHMFSRNFNLTNLEWLQLGGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGN 290 (361)
Q Consensus 212 n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 290 (361)
|.++ .++...+..+++|++|++++|++++..+..+..+++|+.|++++|++++..|..|..+++|+.|++++|.+...
T Consensus 91 N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 91 NRLE-NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp SCCC-CCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred CccC-ccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence 8887 55555555788888888888888887777888888888888888888877788888888888888888888753
No 111
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.81 E-value=1.1e-19 Score=162.74 Aligned_cols=267 Identities=16% Similarity=0.176 Sum_probs=148.1
Q ss_pred CCCCCeEeCCCccccCcCChhhhhccCCCCeEeCcCCcccccCCcccccC--------CCCCcEEEccCCCccccccccc
Q 042011 1 MTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFN--------HSRLKIFYADNNELNAEITQSH 72 (361)
Q Consensus 1 l~~L~~L~L~~n~i~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~--------l~~L~~L~l~~n~~~~~~~~~~ 72 (361)
+++|+.|||++|+|. .... ....++.++.+.+..|. ++..+|.+ +++|+.+++.+ .++......
T Consensus 48 l~~L~~LdLs~n~i~-~~~~-~~~~~~~~~~~~~~~~~----I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~a- 119 (329)
T 3sb4_A 48 FPSLKVLDISNAEIK-MYSG-KAGTYPNGKFYIYMANF----VPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAA- 119 (329)
T ss_dssp CTTCCEEEEEEEEEC-CEEE-SSSSSGGGCCEEECTTE----ECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTT-
T ss_pred hccCeEEecCcceeE-EecC-ccccccccccccccccc----cCHHHhcccccccccccCCCcEEECCc-cccchhHHH-
Confidence 478999999999987 1100 00011112333333331 22234444 55555555554 444333222
Q ss_pred ccccCcccccEEeccCCCCCCCCCchhhcCCCCccEEEecCCcc---cCCcChHHHhcCCCCc-EEEecCCc-ccCCCCC
Q 042011 73 SLIAPNFQLNSLSLSSDYGDGFIFPKFLYHQHDLALVDLSHIKM---NGEFPTWLLENNTKLE-TLFLVNDS-LTGPFRL 147 (361)
Q Consensus 73 ~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l---~~~~~~~~~~~~~~L~-~L~l~~n~-l~~~~~~ 147 (361)
|..+.+|+++++ .++.+..+.+.+|..+.++..+....... ...+....|.++..|+ .+.+.... +......
T Consensus 120 --F~~~~~L~~l~l-~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~ 196 (329)
T 3sb4_A 120 --FKGCDNLKICQI-RKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMK 196 (329)
T ss_dssp --TTTCTTCCEEEB-CCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHH
T ss_pred --hhcCcccceEEc-CCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhh
Confidence 344445555555 44444444444555555554444433211 0011222244444554 33333211 0000001
Q ss_pred CcCCCCCcCEEEccCCcCCccCChhhhccCCCccEEEecCCccccccCccccCCCCCCEEeccCCcCccccchhhhhCCC
Q 042011 148 PIHSHRWLEFLDISNNNFRCHIPVEIGDILPSLKFFNISMNALDGSIPSSFGNMNFLRVLDLSNNQLTGEIPEHLAVGCV 227 (361)
Q Consensus 148 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~ 227 (361)
.-....+++.+.+.++-.. .....+...+++|+.+++++|.++...+.+|.++++|+++++.+| +. .++...|.+++
T Consensus 197 ~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~-~I~~~aF~~~~ 273 (329)
T 3sb4_A 197 AGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LK-TIGQRVFSNCG 273 (329)
T ss_dssp TTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCT
T ss_pred cccCccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cc-eehHHHhhCCh
Confidence 1112344556666554221 112222233678888888888887566667888888888888877 66 77777777888
Q ss_pred CCc-EEEeecCCCCCcccccccCCCCCCEEeccCCcCCccchhhhhcCCCCCEEEC
Q 042011 228 NLE-SLALSNNSLEGHMFSRNFNLTNLEWLQLGGNRFVGEIPQSLSKCSSLEGLYL 282 (361)
Q Consensus 228 ~L~-~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 282 (361)
+|+ .+++.+ .++.+.+..|.+|++|+.+++++|.++...+.+|.++++|+.++.
T Consensus 274 ~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 274 RLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp TCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred hccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 888 888877 777777788888888888888888888777778888888888763
No 112
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.81 E-value=5.6e-19 Score=149.75 Aligned_cols=155 Identities=25% Similarity=0.265 Sum_probs=118.8
Q ss_pred CccEEEecCCcccCCcChHHHhcCCCCcEEEecCCcccCCCCCCcCCCCCcCEEEccCCcCCccCChhhhccCCCccEEE
Q 042011 105 DLALVDLSHIKMNGEFPTWLLENNTKLETLFLVNDSLTGPFRLPIHSHRWLEFLDISNNNFRCHIPVEIGDILPSLKFFN 184 (361)
Q Consensus 105 ~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 184 (361)
..+.++.+++.++ .+|..+ .++|++|++++|.+.+..+..|..+++|++|++++|+++ .++...+..+++|+.|+
T Consensus 20 s~~~v~c~~~~l~-~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~ 94 (229)
T 3e6j_A 20 SGTTVDCRSKRHA-SVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLD 94 (229)
T ss_dssp ETTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEE
T ss_pred eCCEeEccCCCcC-ccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCC-CcChhhcccCCCcCEEE
Confidence 4567888888887 677543 378888888888888777778888888888888888887 67766666678888888
Q ss_pred ecCCccccccCccccCCCCCCEEeccCCcCccccchhhhhCCCCCcEEEeecCCCCCcccccccCCCCCCEEeccCCcCC
Q 042011 185 ISMNALDGSIPSSFGNMNFLRVLDLSNNQLTGEIPEHLAVGCVNLESLALSNNSLEGHMFSRNFNLTNLEWLQLGGNRFV 264 (361)
Q Consensus 185 L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~ 264 (361)
+++|.+++..+..|..+++|++|++++|.++ .+|..+. .+++|++|++++|++++..+..+..+++|+.|++++|++.
T Consensus 95 Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 95 LGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIE-RLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGG-GCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred CCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccc-cCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 8888887666666777888888888888887 7776664 6777888888888777766666777777777777777776
Q ss_pred cc
Q 042011 265 GE 266 (361)
Q Consensus 265 ~~ 266 (361)
..
T Consensus 173 c~ 174 (229)
T 3e6j_A 173 CE 174 (229)
T ss_dssp TT
T ss_pred CC
Confidence 43
No 113
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.81 E-value=5.7e-20 Score=159.16 Aligned_cols=171 Identities=19% Similarity=0.232 Sum_probs=130.6
Q ss_pred CCCCccEEEecCCcccCCcChHHHhcCCCCcEEEecCCcccCCCCCCcCCCCCcCEEEccCCcCCccCChhhhccCCCcc
Q 042011 102 HQHDLALVDLSHIKMNGEFPTWLLENNTKLETLFLVNDSLTGPFRLPIHSHRWLEFLDISNNNFRCHIPVEIGDILPSLK 181 (361)
Q Consensus 102 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 181 (361)
.+.++..++++++.++ .++. +..+++|++|++++|++.. ++ .+..+++|++|++++|+++ .++. + ..+++|+
T Consensus 17 ~l~~l~~l~l~~~~i~-~~~~--~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~-~~~~-l-~~l~~L~ 88 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVT-DLVS--QKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQIS-DLSP-L-KDLTKLE 88 (263)
T ss_dssp HHHHHHHHHHTCSCTT-SEEC--HHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG-G-TTCSSCC
T ss_pred HHHHHHHHHhcCCCcc-cccc--hhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccC-CChh-h-ccCCCCC
Confidence 3556777788888887 4442 6778889999999988875 33 6778888999999999887 5655 3 4488889
Q ss_pred EEEecCCccccccCccccCCCCCCEEeccCCcCccccchhhhhCCCCCcEEEeecCCCCCcccccccCCCCCCEEeccCC
Q 042011 182 FFNISMNALDGSIPSSFGNMNFLRVLDLSNNQLTGEIPEHLAVGCVNLESLALSNNSLEGHMFSRNFNLTNLEWLQLGGN 261 (361)
Q Consensus 182 ~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n 261 (361)
+|++++|.+++ ++.. .. ++|++|++++|.++ .++. + ..+++|+.|++++|++++. ..+..+++|+.|++++|
T Consensus 89 ~L~L~~N~l~~-l~~~-~~-~~L~~L~L~~N~l~-~~~~-l-~~l~~L~~L~Ls~N~i~~~--~~l~~l~~L~~L~L~~N 160 (263)
T 1xeu_A 89 ELSVNRNRLKN-LNGI-PS-ACLSRLFLDNNELR-DTDS-L-IHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGN 160 (263)
T ss_dssp EEECCSSCCSC-CTTC-CC-SSCCEEECCSSCCS-BSGG-G-TTCTTCCEEECTTSCCCBC--GGGGGCTTCCEEECTTS
T ss_pred EEECCCCccCC-cCcc-cc-CcccEEEccCCccC-CChh-h-cCcccccEEECCCCcCCCC--hHHccCCCCCEEECCCC
Confidence 99999888874 4432 23 78888888888887 5543 3 3788888888888888874 35777888888888888
Q ss_pred cCCccchhhhhcCCCCCEEECcCCccccc
Q 042011 262 RFVGEIPQSLSKCSSLEGLYLNNNSLSGN 290 (361)
Q Consensus 262 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 290 (361)
++++. ..+..+++|+.|++++|.+++.
T Consensus 161 ~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 161 EITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp CCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred cCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 88865 6677888888888888888764
No 114
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.81 E-value=2.5e-19 Score=172.22 Aligned_cols=200 Identities=19% Similarity=0.207 Sum_probs=163.4
Q ss_pred cccEEeccCCCCCCCCCchhhcCCCCccEEEecCCcccCCcChHHHhcCCCCcEEEecCCcccCCCCCCcCCCCCcCEEE
Q 042011 80 QLNSLSLSSDYGDGFIFPKFLYHQHDLALVDLSHIKMNGEFPTWLLENNTKLETLFLVNDSLTGPFRLPIHSHRWLEFLD 159 (361)
Q Consensus 80 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 159 (361)
++..+.+ ..+.+.... .+..++.|+.|++++|.+. .++. +..+++|+.|++++|.+.+..+ +..+++|+.|+
T Consensus 22 ~l~~l~l-~~~~i~~~~--~~~~L~~L~~L~l~~n~i~-~l~~--l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~ 93 (605)
T 1m9s_A 22 ETIKDNL-KKKSVTDAV--TQNELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLF 93 (605)
T ss_dssp HHHHHHT-TCSCTTSEE--CHHHHTTCCCCBCTTCCCC-CCTT--GGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEE
T ss_pred HHHHHhc-cCCCccccc--chhcCCCCCEEECcCCCCC-CChH--HccCCCCCEEEeeCCCCCCChh--hccCCCCCEEE
Confidence 4455566 666665443 3567899999999999998 6664 7899999999999999987554 88999999999
Q ss_pred ccCCcCCccCChhhhccCCCccEEEecCCccccccCccccCCCCCCEEeccCCcCccccchhhhhCCCCCcEEEeecCCC
Q 042011 160 ISNNNFRCHIPVEIGDILPSLKFFNISMNALDGSIPSSFGNMNFLRVLDLSNNQLTGEIPEHLAVGCVNLESLALSNNSL 239 (361)
Q Consensus 160 l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l 239 (361)
+++|.+. .++ .+.. +++|+.|+|++|.+.+ + ..+..+++|+.|++++|.+. .+ ..+ ..+++|+.|+|++|.+
T Consensus 94 Ls~N~l~-~l~-~l~~-l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~-~l-~~l-~~l~~L~~L~Ls~N~l 165 (605)
T 1m9s_A 94 LDENKIK-DLS-SLKD-LKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKIT-DI-TVL-SRLTKLDTLSLEDNQI 165 (605)
T ss_dssp CCSSCCC-CCT-TSTT-CTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCC-CC-GGG-GSCTTCSEEECCSSCC
T ss_pred CcCCCCC-CCh-hhcc-CCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccC-Cc-hhh-cccCCCCEEECcCCcC
Confidence 9999998 555 4444 8999999999999984 3 45889999999999999998 55 334 3899999999999999
Q ss_pred CCcccccccCCCCCCEEeccCCcCCccchhhhhcCCCCCEEECcCCcccccCCCCCCCcC
Q 042011 240 EGHMFSRNFNLTNLEWLQLGGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGNVNVPSSPAN 299 (361)
Q Consensus 240 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~ 299 (361)
.+..+ +..+++|+.|+|++|++++. ..+..+++|+.|++++|.+.+.....+..+.
T Consensus 166 ~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~p~~~~~~l~ 221 (605)
T 1m9s_A 166 SDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPINHQSNLV 221 (605)
T ss_dssp CCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECCCCCCCSSCE
T ss_pred CCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCCcccccccEE
Confidence 98655 88999999999999999964 4688999999999999999875444444333
No 115
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.81 E-value=9.5e-21 Score=169.70 Aligned_cols=263 Identities=14% Similarity=0.073 Sum_probs=154.3
Q ss_pred ccCCCCeEeCcCCcccccCCcccccC-CCCCcEEEccCCCcc--cccccccccccCcccccEEeccCCCCCCCCCchhhc
Q 042011 25 HLTSIEELMLSNNHFQIPISLEPLFN-HSRLKIFYADNNELN--AEITQSHSLIAPNFQLNSLSLSSDYGDGFIFPKFLY 101 (361)
Q Consensus 25 ~l~~L~~L~Ls~n~l~~~~~~~~~~~-l~~L~~L~l~~n~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~ 101 (361)
.++++++|.++++ +. ......+.. +++|+.|||++|++. ...... .+ .+..+.+ ..+. +....|.
T Consensus 23 ~~~~l~~L~l~g~-i~-~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~----~~--~~~~~~~-~~~~---I~~~aF~ 90 (329)
T 3sb4_A 23 EANSITHLTLTGK-LN-AEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGT----YP--NGKFYIY-MANF---VPAYAFS 90 (329)
T ss_dssp HHHHCSEEEEEEE-EC-HHHHHHHHHSCTTCCEEEEEEEEECCEEESSSS----SG--GGCCEEE-CTTE---ECTTTTE
T ss_pred hhCceeEEEEecc-cc-HHHHHHHHHhhccCeEEecCcceeEEecCcccc----cc--ccccccc-cccc---cCHHHhc
Confidence 3556777777764 22 111123333 677888888888776 211111 11 1233333 3332 2334566
Q ss_pred C--------CCCccEEEecCCcccCCcChHHHhcCCCCcEEEecCCcccCCCCCCcCCCCCcCEEEccCCcC----CccC
Q 042011 102 H--------QHDLALVDLSHIKMNGEFPTWLLENNTKLETLFLVNDSLTGPFRLPIHSHRWLEFLDISNNNF----RCHI 169 (361)
Q Consensus 102 ~--------l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l----~~~~ 169 (361)
. |++|+.+++.+ .++ .++...|.++++|+.+++++|.+....+.+|..+.++..+....+.. . .+
T Consensus 91 ~~~~~~~~g~~~L~~l~L~~-~i~-~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~-~i 167 (329)
T 3sb4_A 91 NVVNGVTKGKQTLEKVILSE-KIK-NIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKN-RW 167 (329)
T ss_dssp EEETTEEEECTTCCC-CBCT-TCC-EECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTST-TT
T ss_pred ccccccccccCCCcEEECCc-ccc-chhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccc-cc
Confidence 6 77777777777 665 56666677777777777777777666666777666666665544211 1 12
Q ss_pred ChhhhccCCCcc--------------------------EEEecCCccccccCccccCCCCCCEEeccCCcCccccchhhh
Q 042011 170 PVEIGDILPSLK--------------------------FFNISMNALDGSIPSSFGNMNFLRVLDLSNNQLTGEIPEHLA 223 (361)
Q Consensus 170 ~~~~~~~l~~L~--------------------------~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~ 223 (361)
....+..+..|+ .+.+.++-...........+++|+++++++|.++ .++...|
T Consensus 168 ~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~-~I~~~aF 246 (329)
T 3sb4_A 168 EHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNAT-TIPDFTF 246 (329)
T ss_dssp TTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCC-EECTTTT
T ss_pred cccccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcc-eecHhhh
Confidence 222222233444 3333222111000001112677777777777777 7777777
Q ss_pred hCCCCCcEEEeecCCCCCcccccccCCCCCC-EEeccCCcCCccchhhhhcCCCCCEEECcCCcccccCCCCCCCcCcce
Q 042011 224 VGCVNLESLALSNNSLEGHMFSRNFNLTNLE-WLQLGGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGNVNVPSSPANTLF 302 (361)
Q Consensus 224 ~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~-~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~L~ 302 (361)
.++++|+.+++.+| ++.+....|.++++|+ .+++.+ .++...+.+|.++++|+.+++++|.++...+.+|.++++|+
T Consensus 247 ~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~ 324 (329)
T 3sb4_A 247 AQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSK 324 (329)
T ss_dssp TTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCC
T ss_pred hCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchh
Confidence 77777777777776 6666677777777777 777776 66655667777777777777777777766666777777777
Q ss_pred eec
Q 042011 303 NLS 305 (361)
Q Consensus 303 ~l~ 305 (361)
.++
T Consensus 325 ~ly 327 (329)
T 3sb4_A 325 LIY 327 (329)
T ss_dssp EEE
T ss_pred hhc
Confidence 664
No 116
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.80 E-value=3.3e-19 Score=147.57 Aligned_cols=153 Identities=18% Similarity=0.205 Sum_probs=88.1
Q ss_pred hcCCCCcEEEecCCcccCCCCCCcCCCCCcCEEEccCCcCCccCChhhhccCCCccEEEecCCccccccCccccCCCCCC
Q 042011 126 ENNTKLETLFLVNDSLTGPFRLPIHSHRWLEFLDISNNNFRCHIPVEIGDILPSLKFFNISMNALDGSIPSSFGNMNFLR 205 (361)
Q Consensus 126 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~ 205 (361)
..+++|++|++++|.+.. ++ .+..+++|++|++++|.++ .++ .+.. +++|++|++++|.+++..+..+..+++|+
T Consensus 41 ~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~~n~~~-~~~-~l~~-l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 115 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTD-LT-GIEYAHNIKDLTINNIHAT-NYN-PISG-LSNLERLRIMGKDVTSDKIPNLSGLTSLT 115 (197)
T ss_dssp HHHHTCCEEEEESSCCSC-CT-TGGGCTTCSEEEEESCCCS-CCG-GGTT-CTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred hhcCCccEEeccCCCccC-hH-HHhcCCCCCEEEccCCCCC-cch-hhhc-CCCCCEEEeECCccCcccChhhcCCCCCC
Confidence 345666777777776663 33 4666666777777766554 332 3333 66666666666666655566666666666
Q ss_pred EEeccCCcCccccchhhhhCCCCCcEEEeecCC-CCCcccccccCCCCCCEEeccCCcCCccchhhhhcCCCCCEEECcC
Q 042011 206 VLDLSNNQLTGEIPEHLAVGCVNLESLALSNNS-LEGHMFSRNFNLTNLEWLQLGGNRFVGEIPQSLSKCSSLEGLYLNN 284 (361)
Q Consensus 206 ~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 284 (361)
+|++++|.+++..+..+. .+++|++|++++|. ++.. + .+..+++|+.|++++|++++ ++ .+..+++|+.|++++
T Consensus 116 ~L~Ls~n~i~~~~~~~l~-~l~~L~~L~L~~n~~i~~~-~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~ 190 (197)
T 4ezg_A 116 LLDISHSAHDDSILTKIN-TLPKVNSIDLSYNGAITDI-M-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFS 190 (197)
T ss_dssp EEECCSSBCBGGGHHHHT-TCSSCCEEECCSCTBCCCC-G-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECB
T ss_pred EEEecCCccCcHhHHHHh-hCCCCCEEEccCCCCcccc-H-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeC
Confidence 666666666643444443 56666666666665 4442 2 45556666666666666653 22 455556666666666
Q ss_pred Cccc
Q 042011 285 NSLS 288 (361)
Q Consensus 285 N~l~ 288 (361)
|+|.
T Consensus 191 N~i~ 194 (197)
T 4ezg_A 191 QTIG 194 (197)
T ss_dssp C---
T ss_pred cccC
Confidence 6554
No 117
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.80 E-value=7.6e-19 Score=145.40 Aligned_cols=154 Identities=16% Similarity=0.200 Sum_probs=108.3
Q ss_pred CCCCCcCEEEccCCcCCccCChhhhccCCCccEEEecCCccccccCccccCCCCCCEEeccCCcCccccchhhhhCCCCC
Q 042011 150 HSHRWLEFLDISNNNFRCHIPVEIGDILPSLKFFNISMNALDGSIPSSFGNMNFLRVLDLSNNQLTGEIPEHLAVGCVNL 229 (361)
Q Consensus 150 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L 229 (361)
..+++|++|++++|.++ .++ .+.. +++|++|++++|.++ . +..+..+++|++|++++|.+++..+..+. .+++|
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~-l~~L~~L~l~~n~~~-~-~~~l~~l~~L~~L~l~~n~l~~~~~~~l~-~l~~L 114 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEY-AHNIKDLTINNIHAT-N-YNPISGLSNLERLRIMGKDVTSDKIPNLS-GLTSL 114 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGG-CTTCSEEEEESCCCS-C-CGGGTTCTTCCEEEEECTTCBGGGSCCCT-TCTTC
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhc-CCCCCEEEccCCCCC-c-chhhhcCCCCCEEEeECCccCcccChhhc-CCCCC
Confidence 55667788888888877 666 3433 778888888888665 2 33577778888888888887754555554 67788
Q ss_pred cEEEeecCCCCCcccccccCCCCCCEEeccCCc-CCccchhhhhcCCCCCEEECcCCcccccCCCCCCCcCcceeecccc
Q 042011 230 ESLALSNNSLEGHMFSRNFNLTNLEWLQLGGNR-FVGEIPQSLSKCSSLEGLYLNNNSLSGNVNVPSSPANTLFNLSQNS 308 (361)
Q Consensus 230 ~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~L~~l~l~~ 308 (361)
++|++++|++++..+..+..+++|+.|++++|+ ++ .++ .+..+++|+.|++++|++++. + .+..+++|++|++++
T Consensus 115 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~ 190 (197)
T 4ezg_A 115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFS 190 (197)
T ss_dssp CEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECB
T ss_pred CEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeC
Confidence 888888888877667777778888888888887 55 344 577778888888888887753 3 567777888888888
Q ss_pred ccccC
Q 042011 309 RRFTS 313 (361)
Q Consensus 309 N~~~~ 313 (361)
|++.+
T Consensus 191 N~i~~ 195 (197)
T 4ezg_A 191 QTIGG 195 (197)
T ss_dssp C----
T ss_pred cccCC
Confidence 77654
No 118
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.79 E-value=4.4e-19 Score=146.15 Aligned_cols=138 Identities=22% Similarity=0.188 Sum_probs=77.8
Q ss_pred cEEEecCCccccccCccccCCCCCCEEeccCCcCccccch-hhhhCCCCCcEEEeecCCCCCcccccccCCCCCCEEecc
Q 042011 181 KFFNISMNALDGSIPSSFGNMNFLRVLDLSNNQLTGEIPE-HLAVGCVNLESLALSNNSLEGHMFSRNFNLTNLEWLQLG 259 (361)
Q Consensus 181 ~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~-~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~ 259 (361)
+.+++++|.++ .+|..+. .++++|++++|.++ .++. ..+..+++|++|++++|++++..+..+..+++|+.|+++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~-~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELG-RISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCC-SBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCC-ccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 34444444443 3333222 14555555555554 3332 223355566666666666655555556666666666666
Q ss_pred CCcCCccchhhhhcCCCCCEEECcCCcccccCCCCCCCcCcceeeccccccccCCcccccccc
Q 042011 260 GNRFVGEIPQSLSKCSSLEGLYLNNNSLSGNVNVPSSPANTLFNLSQNSRRFTSSISHSHLLN 322 (361)
Q Consensus 260 ~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~~~~~~~~ 322 (361)
+|++++..+..|..+++|++|++++|++++..|..+..+++|++|++++|+|+|.++..++..
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~ 149 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAE 149 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHH
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHHH
Confidence 666665555556666666666666666666666666666666666666666666665544443
No 119
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.78 E-value=1.3e-17 Score=152.75 Aligned_cols=270 Identities=12% Similarity=0.090 Sum_probs=215.8
Q ss_pred hhccCCCCeEeCcCCcccccCCcccccCCCCCcEEEccCCCcccccccccccccCcccccEEeccCCCCCCCCCchhhcC
Q 042011 23 LVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLIAPNFQLNSLSLSSDYGDGFIFPKFLYH 102 (361)
Q Consensus 23 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~ 102 (361)
+..+..++.+.+.++ ++ .++..+|.++ +|+.+.+..+ ++...... |.. .+|+.+.+ .+ .+..+....|..
T Consensus 109 ~~~~~~l~~i~ip~~-i~-~I~~~aF~~~-~L~~i~l~~~-i~~I~~~a---F~~-~~L~~i~l-p~-~l~~I~~~aF~~ 178 (401)
T 4fdw_A 109 TEILKGYNEIILPNS-VK-SIPKDAFRNS-QIAKVVLNEG-LKSIGDMA---FFN-STVQEIVF-PS-TLEQLKEDIFYY 178 (401)
T ss_dssp EEECSSCSEEECCTT-CC-EECTTTTTTC-CCSEEECCTT-CCEECTTT---TTT-CCCCEEEC-CT-TCCEECSSTTTT
T ss_pred EEecCCccEEEECCc-cC-EehHhhcccC-CccEEEeCCC-ccEECHHh---cCC-CCceEEEe-CC-CccEehHHHhhC
Confidence 445678888888764 55 5666788875 7999998876 55544444 333 37999998 54 566667788999
Q ss_pred CCCccEEEecCCcccCCcChHHHhcCCCCcEEEecCCcccCCCCCCcCCCCCcCEEEccCCcCCccCChhhhccCCCccE
Q 042011 103 QHDLALVDLSHIKMNGEFPTWLLENNTKLETLFLVNDSLTGPFRLPIHSHRWLEFLDISNNNFRCHIPVEIGDILPSLKF 182 (361)
Q Consensus 103 l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 182 (361)
|++|+.++++.|.++ .++...|. ..+|+.+.+..+ +......+|..+++|+.+++..+ ++ .++...|.. .+|+.
T Consensus 179 c~~L~~l~l~~n~l~-~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~-~I~~~aF~~-~~L~~ 252 (401)
T 4fdw_A 179 CYNLKKADLSKTKIT-KLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VS-TIGQEAFRE-SGITT 252 (401)
T ss_dssp CTTCCEEECTTSCCS-EECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CC-EECTTTTTT-CCCSE
T ss_pred cccCCeeecCCCcce-EechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-cc-Ccccccccc-CCccE
Confidence 999999999999998 77777677 589999999854 66667888999999999999875 55 788888875 79999
Q ss_pred EEecCCccccccCccccCCCCCCEEeccCCcCc----cccchhhhhCCCCCcEEEeecCCCCCcccccccCCCCCCEEec
Q 042011 183 FNISMNALDGSIPSSFGNMNFLRVLDLSNNQLT----GEIPEHLAVGCVNLESLALSNNSLEGHMFSRNFNLTNLEWLQL 258 (361)
Q Consensus 183 L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~----~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L 258 (361)
+.+. +.++.....+|.++++|+.+.+.++.+. ..++...|.++++|+.+.+. +.++.+....|.+|++|+.+.+
T Consensus 253 i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~l 330 (401)
T 4fdw_A 253 VKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTI 330 (401)
T ss_dssp EEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEE
T ss_pred EEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEE
Confidence 9995 4466466788999999999999887653 14778888899999999998 5588888889999999999999
Q ss_pred cCCcCCccchhhhhcCCCCCEEECcCCcccccCCCCCCCcC-cceeecccccccc
Q 042011 259 GGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGNVNVPSSPAN-TLFNLSQNSRRFT 312 (361)
Q Consensus 259 ~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-~L~~l~l~~N~~~ 312 (361)
..+ ++.....+|.++ +|+.+++++|.+....+..|.+++ .+..|.+-.+.+.
T Consensus 331 p~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 331 PAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp CTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred Ccc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence 665 666777899999 999999999999877777888874 7888888876654
No 120
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.78 E-value=1.9e-18 Score=142.41 Aligned_cols=139 Identities=23% Similarity=0.203 Sum_probs=107.6
Q ss_pred cEEEecCCccccccCccccCCCCCCEEeccCCcCccccchhhhhCCCCCcEEEeecCCCCCcccccccCCCCCCEEeccC
Q 042011 181 KFFNISMNALDGSIPSSFGNMNFLRVLDLSNNQLTGEIPEHLAVGCVNLESLALSNNSLEGHMFSRNFNLTNLEWLQLGG 260 (361)
Q Consensus 181 ~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~ 260 (361)
+.+++++|.++ .+|..+ .+++++|++++|.++ .+|..+. .+++|++|++++|.+++..+..|..+++|+.|++++
T Consensus 13 ~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~n~i~-~ip~~~~-~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGI--PRDVTELYLDGNQFT-LVPKELS-NYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TEEECTTSCCS-SCCSCC--CTTCCEEECCSSCCC-SCCGGGG-GCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCCC-cCCCCC--CCCCCEEECCCCcCc-hhHHHhh-cccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence 45666666666 455433 246777777777777 6775443 678888888888888877777788888888888888
Q ss_pred CcCCccchhhhhcCCCCCEEECcCCcccccCCCCCCCcCcceeeccccccccCCcccccccccc
Q 042011 261 NRFVGEIPQSLSKCSSLEGLYLNNNSLSGNVNVPSSPANTLFNLSQNSRRFTSSISHSHLLNLH 324 (361)
Q Consensus 261 n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~~~~~~~~~~ 324 (361)
|++++..+..|..+++|+.|++++|+++...+..|..+++|+.|++++|++.|++...++..|.
T Consensus 88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l~~l~~~~ 151 (193)
T 2wfh_A 88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNMQWLSDWV 151 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGGHHHHHHH
T ss_pred CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCcCHHHHHHH
Confidence 8888777778888889999999999998766677888899999999999999888877766653
No 121
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.78 E-value=1.1e-21 Score=187.53 Aligned_cols=210 Identities=20% Similarity=0.184 Sum_probs=123.4
Q ss_pred hccCCCCeEeCcCCcccccCCcccccCCCCCcEEEccCCCcccccccccccccCcccccEEeccCCCCCCCCCchhhcCC
Q 042011 24 VHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLIAPNFQLNSLSLSSDYGDGFIFPKFLYHQ 103 (361)
Q Consensus 24 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l 103 (361)
..+++|+.|+|++|+++ .+| ..+.++++|+.|++++|......+. .+ ..+...+..|..+..+
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp-~~i~~l~~L~~L~l~~n~~l~~l~~---------ll------~~~~~~~~~~~~l~~l 408 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQ-SELESCKELQELEPENKWCLLTIIL---------LM------RALDPLLYEKETLQYF 408 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHH-HHHHHHHHHHHHCTTCHHHHHHHHH---------HH------HHHCTGGGHHHHHHHH
T ss_pred ccCccceeccCChhhHH-hhH-HHHHHHHHHHHhccccchhhhhHHH---------HH------HhcccccCCHHHHHHH
Confidence 34566667777777665 566 4566666677776655431100000 00 0111122344445555
Q ss_pred CCccEEE-ecCCcccCCcChHH-----Hh--cCCCCcEEEecCCcccCCCCCCcCCCCCcCEEEccCCcCCccCChhhhc
Q 042011 104 HDLALVD-LSHIKMNGEFPTWL-----LE--NNTKLETLFLVNDSLTGPFRLPIHSHRWLEFLDISNNNFRCHIPVEIGD 175 (361)
Q Consensus 104 ~~L~~L~-l~~n~l~~~~~~~~-----~~--~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 175 (361)
++|+.|+ ++.|.+. .++... +. ....|+.|++++|.+++ +|. +..+++|+.|++++|.++ .+|..+..
T Consensus 409 ~~L~~L~~l~~n~~~-~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~ 484 (567)
T 1dce_A 409 STLKAVDPMRAAYLD-DLRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAA 484 (567)
T ss_dssp HHHHHHCGGGHHHHH-HHHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGG
T ss_pred HhcccCcchhhcccc-hhhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhc
Confidence 5555555 3333322 111100 00 11247777787777775 454 777777888888888777 77776655
Q ss_pred cCCCccEEEecCCccccccCccccCCCCCCEEeccCCcCcccc-chhhhhCCCCCcEEEeecCCCCCcccc---cccCCC
Q 042011 176 ILPSLKFFNISMNALDGSIPSSFGNMNFLRVLDLSNNQLTGEI-PEHLAVGCVNLESLALSNNSLEGHMFS---RNFNLT 251 (361)
Q Consensus 176 ~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~-~~~~~~~~~~L~~L~L~~n~l~~~~~~---~~~~~~ 251 (361)
+++|+.|++++|.+++ +| .++.+++|++|++++|.+++.. |..+. .+++|+.|++++|.+++..+. .+..++
T Consensus 485 -l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~-~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp 560 (567)
T 1dce_A 485 -LRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLV-SCPRLVLLNLQGNSLCQEEGIQERLAEMLP 560 (567)
T ss_dssp -CTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGG-GCTTCCEEECTTSGGGGSSSCTTHHHHHCT
T ss_pred -CCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHh-cCCCCCEEEecCCcCCCCccHHHHHHHHCc
Confidence 7788888888887774 55 6777788888888888877433 55554 677888888888877764332 123467
Q ss_pred CCCEEec
Q 042011 252 NLEWLQL 258 (361)
Q Consensus 252 ~L~~L~L 258 (361)
+|+.|++
T Consensus 561 ~L~~L~l 567 (567)
T 1dce_A 561 SVSSILT 567 (567)
T ss_dssp TCSEEEC
T ss_pred ccCccCC
Confidence 7777754
No 122
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.78 E-value=4.9e-19 Score=153.26 Aligned_cols=169 Identities=18% Similarity=0.211 Sum_probs=137.2
Q ss_pred ccccEEeccCCCCCCCCCchhhcCCCCccEEEecCCcccCCcChHHHhcCCCCcEEEecCCcccCCCCCCcCCCCCcCEE
Q 042011 79 FQLNSLSLSSDYGDGFIFPKFLYHQHDLALVDLSHIKMNGEFPTWLLENNTKLETLFLVNDSLTGPFRLPIHSHRWLEFL 158 (361)
Q Consensus 79 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 158 (361)
.++..+++ +.+.+++.. .+..+++|+.|++++|.++ .++ . +..+++|++|++++|++++..+ +..+++|++|
T Consensus 19 ~~l~~l~l-~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~-l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L 90 (263)
T 1xeu_A 19 ANAVKQNL-GKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-G-MQFFTNLKELHLSHNQISDLSP--LKDLTKLEEL 90 (263)
T ss_dssp HHHHHHHH-TCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-T-GGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEE
T ss_pred HHHHHHHh-cCCCccccc--chhhcCcCcEEECcCCCcc-cch-H-HhhCCCCCEEECCCCccCCChh--hccCCCCCEE
Confidence 36677788 777777543 5778899999999999987 666 3 7789999999999999986544 8889999999
Q ss_pred EccCCcCCccCChhhhccCCCccEEEecCCccccccCccccCCCCCCEEeccCCcCccccchhhhhCCCCCcEEEeecCC
Q 042011 159 DISNNNFRCHIPVEIGDILPSLKFFNISMNALDGSIPSSFGNMNFLRVLDLSNNQLTGEIPEHLAVGCVNLESLALSNNS 238 (361)
Q Consensus 159 ~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~ 238 (361)
++++|+++ .++.... ++|++|++++|.+++ ++ .+..+++|++|++++|.++ .++ .+ ..+++|++|++++|+
T Consensus 91 ~L~~N~l~-~l~~~~~---~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~-~~~-~l-~~l~~L~~L~L~~N~ 161 (263)
T 1xeu_A 91 SVNRNRLK-NLNGIPS---ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLK-SIV-ML-GFLSKLEVLDLHGNE 161 (263)
T ss_dssp ECCSSCCS-CCTTCCC---SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCC-BCG-GG-GGCTTCCEEECTTSC
T ss_pred ECCCCccC-CcCcccc---CcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCC-CCh-HH-ccCCCCCEEECCCCc
Confidence 99999998 5664332 789999999999984 33 5888999999999999998 565 33 378999999999999
Q ss_pred CCCcccccccCCCCCCEEeccCCcCCcc
Q 042011 239 LEGHMFSRNFNLTNLEWLQLGGNRFVGE 266 (361)
Q Consensus 239 l~~~~~~~~~~~~~L~~L~L~~n~l~~~ 266 (361)
+++. ..+..+++|+.|++++|++.+.
T Consensus 162 i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 162 ITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp CCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred Ccch--HHhccCCCCCEEeCCCCcccCC
Confidence 9875 6788889999999999988754
No 123
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.77 E-value=2.1e-17 Score=151.35 Aligned_cols=247 Identities=10% Similarity=-0.004 Sum_probs=196.4
Q ss_pred ccCCCCCcEEEccCCCcccccccccccccCcccccEEeccCCCCCCCCCchhhcCCCCccEEEecCCcccCCcChHHHhc
Q 042011 48 LFNHSRLKIFYADNNELNAEITQSHSLIAPNFQLNSLSLSSDYGDGFIFPKFLYHQHDLALVDLSHIKMNGEFPTWLLEN 127 (361)
Q Consensus 48 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~ 127 (361)
+..+..++.+.+..+ ++...... |..+ +|+.+.+ ..+ +..+...+|.++ +|+.+.+.. .+. .++...|.+
T Consensus 109 ~~~~~~l~~i~ip~~-i~~I~~~a---F~~~-~L~~i~l-~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~-~I~~~aF~~ 178 (401)
T 4fdw_A 109 TEILKGYNEIILPNS-VKSIPKDA---FRNS-QIAKVVL-NEG-LKSIGDMAFFNS-TVQEIVFPS-TLE-QLKEDIFYY 178 (401)
T ss_dssp EEECSSCSEEECCTT-CCEECTTT---TTTC-CCSEEEC-CTT-CCEECTTTTTTC-CCCEEECCT-TCC-EECSSTTTT
T ss_pred EEecCCccEEEECCc-cCEehHhh---cccC-CccEEEe-CCC-ccEECHHhcCCC-CceEEEeCC-Ccc-EehHHHhhC
Confidence 445688899998854 55444444 3443 7999998 544 666677788885 799999986 565 666666999
Q ss_pred CCCCcEEEecCCcccCCCCCCcCCCCCcCEEEccCCcCCccCChhhhccCCCccEEEecCCccccccCccccCCCCCCEE
Q 042011 128 NTKLETLFLVNDSLTGPFRLPIHSHRWLEFLDISNNNFRCHIPVEIGDILPSLKFFNISMNALDGSIPSSFGNMNFLRVL 207 (361)
Q Consensus 128 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L 207 (361)
+++|+.+++..|++......+|. ..+|+.+.+..+ ++ .++...|..+++|+.+++..+ ++.....+|.+ .+|+.+
T Consensus 179 c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~-~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i 253 (401)
T 4fdw_A 179 CYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LK-EIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTV 253 (401)
T ss_dssp CTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CC-EECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEE
T ss_pred cccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hh-eehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEE
Confidence 99999999999998876677777 588999999854 76 788888888899999999875 55455667777 789999
Q ss_pred eccCCcCccccchhhhhCCCCCcEEEeecCCCC-----CcccccccCCCCCCEEeccCCcCCccchhhhhcCCCCCEEEC
Q 042011 208 DLSNNQLTGEIPEHLAVGCVNLESLALSNNSLE-----GHMFSRNFNLTNLEWLQLGGNRFVGEIPQSLSKCSSLEGLYL 282 (361)
Q Consensus 208 ~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~-----~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 282 (361)
.+. +.++ .++...|.++++|+.+.+.+|.+. .+....|.+|++|+.+++.+ .++.....+|.++++|+.+++
T Consensus 254 ~lp-~~i~-~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~l 330 (401)
T 4fdw_A 254 KLP-NGVT-NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTI 330 (401)
T ss_dssp EEE-TTCC-EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEE
T ss_pred EeC-CCcc-EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEE
Confidence 994 5576 788888889999999999988765 46778899999999999984 577677789999999999999
Q ss_pred cCCcccccCCCCCCCcCcceeeccccccccCC
Q 042011 283 NNNSLSGNVNVPSSPANTLFNLSQNSRRFTSS 314 (361)
Q Consensus 283 ~~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~ 314 (361)
.+| ++...+.+|.++ +|+.+++.+|.....
T Consensus 331 p~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l 360 (401)
T 4fdw_A 331 PAN-VTQINFSAFNNT-GIKEVKVEGTTPPQV 360 (401)
T ss_dssp CTT-CCEECTTSSSSS-CCCEEEECCSSCCBC
T ss_pred Ccc-ccEEcHHhCCCC-CCCEEEEcCCCCccc
Confidence 665 776777889999 999999999977653
No 124
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.76 E-value=1.3e-20 Score=180.15 Aligned_cols=196 Identities=22% Similarity=0.220 Sum_probs=132.6
Q ss_pred cCCCCccEEEecCCcccCCcChHHHhcCCCCcEEEecCCc-------------ccCCCCCCcCCCCCcCEEE-ccCCcCC
Q 042011 101 YHQHDLALVDLSHIKMNGEFPTWLLENNTKLETLFLVNDS-------------LTGPFRLPIHSHRWLEFLD-ISNNNFR 166 (361)
Q Consensus 101 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~-------------l~~~~~~~~~~l~~L~~L~-l~~n~l~ 166 (361)
..++.|+.|++++|.++ .+|.. ++.+++|+.|++++|. ..+..|..+..+++|+.|+ ++.|.+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~-i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~ 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSE-LESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD 423 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHH-HHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHH-HHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc
Confidence 45778888888888887 77776 6778888888876653 3344455566666777776 5555433
Q ss_pred ccCChh------hhc-cCCCccEEEecCCccccccCccccCCCCCCEEeccCCcCccccchhhhhCCCCCcEEEeecCCC
Q 042011 167 CHIPVE------IGD-ILPSLKFFNISMNALDGSIPSSFGNMNFLRVLDLSNNQLTGEIPEHLAVGCVNLESLALSNNSL 239 (361)
Q Consensus 167 ~~~~~~------~~~-~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l 239 (361)
.++.. +.. ....|+.|++++|.+++ +|. +..+++|++|++++|.++ .+|..+. .+++|+.|++++|++
T Consensus 424 -~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~-~l~~L~~L~Ls~N~l 498 (567)
T 1dce_A 424 -DLRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALA-ALRCLEVLQASDNAL 498 (567)
T ss_dssp -HHHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGG-GCTTCCEEECCSSCC
T ss_pred -hhhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhh-cCCCCCEEECCCCCC
Confidence 22210 000 01257778888888773 555 777788888888888887 7777665 677888888888888
Q ss_pred CCcccccccCCCCCCEEeccCCcCCccc-hhhhhcCCCCCEEECcCCcccccCCCCC---CCcCcceeec
Q 042011 240 EGHMFSRNFNLTNLEWLQLGGNRFVGEI-PQSLSKCSSLEGLYLNNNSLSGNVNVPS---SPANTLFNLS 305 (361)
Q Consensus 240 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~l~~N~l~~~~~~~~---~~~~~L~~l~ 305 (361)
++ +| .++.+++|+.|++++|++++.. |..+..+++|+.|++++|.+++.+|... ..+++|+.|+
T Consensus 499 ~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 499 EN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp CC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred CC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 77 34 6777788888888888887665 7777778888888888888876554321 2256666654
No 125
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.73 E-value=3.2e-17 Score=133.20 Aligned_cols=132 Identities=20% Similarity=0.203 Sum_probs=86.3
Q ss_pred cEEEecCCccccccCccccCCCCCCEEeccCCcCccccchhhhhCCCCCcEEEeecCCCCCcccccccCCCCCCEEeccC
Q 042011 181 KFFNISMNALDGSIPSSFGNMNFLRVLDLSNNQLTGEIPEHLAVGCVNLESLALSNNSLEGHMFSRNFNLTNLEWLQLGG 260 (361)
Q Consensus 181 ~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~ 260 (361)
+.++++++.++ .+|..+ .++|++|++++|.++ .++...+..+++|++|++++|++++..+..+..+++|+.|++++
T Consensus 10 ~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 10 TEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEecCCCCc-cCCCCC--CCCCcEEEeCCCccc-EeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 44555555554 333222 245666666666665 44444434566666666666666665555566777777777777
Q ss_pred CcCCccchhhhhcCCCCCEEECcCCcccccCCCCCCCcCcceeeccccccccCCcc
Q 042011 261 NRFVGEIPQSLSKCSSLEGLYLNNNSLSGNVNVPSSPANTLFNLSQNSRRFTSSIS 316 (361)
Q Consensus 261 n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~~ 316 (361)
|++++..+..+..+++|+.|++++|++++..+..+..+++|++|++++|++++.++
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 77776666667777788888888888876666566777888888888888887766
No 126
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.72 E-value=2.8e-18 Score=168.85 Aligned_cols=182 Identities=21% Similarity=0.278 Sum_probs=116.6
Q ss_pred CCchhhcCCCCccEEEecCCcccCCcChHHHhcCCCCcEEEecCCcccCCCCCCcCCCCCcCEEEccCCcCCccCChhhh
Q 042011 95 IFPKFLYHQHDLALVDLSHIKMNGEFPTWLLENNTKLETLFLVNDSLTGPFRLPIHSHRWLEFLDISNNNFRCHIPVEIG 174 (361)
Q Consensus 95 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 174 (361)
..+..+..++.|+.|++++|.+. .+|..+ ..+++|++|+|++|.++ .+|..+..+++|+.|++++|+++ .+|..+.
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~-~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~ 290 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIF-NISANI-FKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELG 290 (727)
T ss_dssp -------CCCCCCEEECTTSCCS-CCCGGG-GGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGG
T ss_pred cChhhhccCCCCcEEECCCCCCC-CCChhh-cCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhc
Confidence 45677888999999999999998 787774 48899999999999998 67888899999999999999998 8888876
Q ss_pred ccCCCccEEEecCCccccccCccccCCCCCCEEeccCCcCccccchhhhhCCCCCcEEEeecCCCCCcccccccCCCCCC
Q 042011 175 DILPSLKFFNISMNALDGSIPSSFGNMNFLRVLDLSNNQLTGEIPEHLAVGCVNLESLALSNNSLEGHMFSRNFNLTNLE 254 (361)
Q Consensus 175 ~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~ 254 (361)
. +++|++|+|++|.++ .+|..|+.+++|++|++++|.+++.+|..+.........+++++|.+++..|. .|+
T Consensus 291 ~-l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~ 362 (727)
T 4b8c_D 291 S-CFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERR 362 (727)
T ss_dssp G-GTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C--
T ss_pred C-CCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc------ccc
Confidence 6 889999999999997 77888999999999999999999777766542112233477888888776554 455
Q ss_pred EEeccCC--------cCCccchhhhhcCCCCCEEECcCCccc
Q 042011 255 WLQLGGN--------RFVGEIPQSLSKCSSLEGLYLNNNSLS 288 (361)
Q Consensus 255 ~L~L~~n--------~l~~~~~~~~~~l~~L~~L~l~~N~l~ 288 (361)
.|+++.| .+.+..+..+..+.++....++.|-+.
T Consensus 363 ~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 363 FIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp ---------------------------------------CCC
T ss_pred eeEeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence 6666666 233333344445555666666777664
No 127
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.72 E-value=5.6e-17 Score=133.52 Aligned_cols=129 Identities=26% Similarity=0.340 Sum_probs=71.4
Q ss_pred CEEEccCCcCCccCChhhhccCCCccEEEecCCccccccCc-cccCCCCCCEEeccCCcCccccchhhhhCCCCCcEEEe
Q 042011 156 EFLDISNNNFRCHIPVEIGDILPSLKFFNISMNALDGSIPS-SFGNMNFLRVLDLSNNQLTGEIPEHLAVGCVNLESLAL 234 (361)
Q Consensus 156 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L 234 (361)
+.+++++|+++ .+|..++. ++++|++++|.+++..+. .|..+++|++|++++|.+++..|..+ ..+++|++|++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~---~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~L 85 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL---HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAF-EGASHIQELQL 85 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT---TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTT-TTCTTCCEEEC
T ss_pred CEEEcCCCCcC-cCccCCCC---CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHc-CCcccCCEEEC
Confidence 45555555554 55544322 555556655555533332 25555566666666666552223333 25556666666
Q ss_pred ecCCCCCcccccccCCCCCCEEeccCCcCCccchhhhhcCCCCCEEECcCCcccc
Q 042011 235 SNNSLEGHMFSRNFNLTNLEWLQLGGNRFVGEIPQSLSKCSSLEGLYLNNNSLSG 289 (361)
Q Consensus 235 ~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 289 (361)
++|++++..+..+..+++|+.|++++|++++..|..+..+++|+.|++++|.+.+
T Consensus 86 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 86 GENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp CSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred CCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 6666655555555566666666666666665555566666666666666666654
No 128
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.71 E-value=8.1e-17 Score=129.59 Aligned_cols=133 Identities=20% Similarity=0.112 Sum_probs=82.6
Q ss_pred CCcCEEEccCCcCC-ccCChhhhccCCCccEEEecCCccccccCccccCCCCCCEEeccCCcCccccchhhhhCCCCCcE
Q 042011 153 RWLEFLDISNNNFR-CHIPVEIGDILPSLKFFNISMNALDGSIPSSFGNMNFLRVLDLSNNQLTGEIPEHLAVGCVNLES 231 (361)
Q Consensus 153 ~~L~~L~l~~n~l~-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~ 231 (361)
++|++|++++|.++ +.+|..+.. +++|++|++++|.+++. ..+..+++|++|++++|.+.+.+|..+. .+++|++
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~-l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~ 99 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAE-FVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAE-KLPNLTH 99 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGG-GGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHH-HCTTCCE
T ss_pred ccCCEEECCCCCCChhhHHHHHHh-CCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHh-hCCCCCE
Confidence 45666666666665 345544333 56666666666666633 5566667777777777777633444333 5677777
Q ss_pred EEeecCCCCCccc-ccccCCCCCCEEeccCCcCCccch---hhhhcCCCCCEEECcCCcccc
Q 042011 232 LALSNNSLEGHMF-SRNFNLTNLEWLQLGGNRFVGEIP---QSLSKCSSLEGLYLNNNSLSG 289 (361)
Q Consensus 232 L~L~~n~l~~~~~-~~~~~~~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~l~~N~l~~ 289 (361)
|++++|.+++... ..+..+++|+.|++++|++++..+ ..+..+++|+.|++++|.+..
T Consensus 100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence 7777777766322 556667777777777777764433 366667777777777776653
No 129
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.70 E-value=4e-17 Score=131.39 Aligned_cols=135 Identities=22% Similarity=0.192 Sum_probs=118.1
Q ss_pred CCCccEEEecCCccc-cccCccccCCCCCCEEeccCCcCccccchhhhhCCCCCcEEEeecCCCCCcccccccCCCCCCE
Q 042011 177 LPSLKFFNISMNALD-GSIPSSFGNMNFLRVLDLSNNQLTGEIPEHLAVGCVNLESLALSNNSLEGHMFSRNFNLTNLEW 255 (361)
Q Consensus 177 l~~L~~L~L~~n~l~-~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~ 255 (361)
.++|++|++++|.++ +.+|..+..+++|++|++++|.++ .+ ..+ ..+++|++|++++|++++..+..+..+++|+.
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~-~~-~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SV-SNL-PKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCC-CC-SSC-CCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCC-Ch-hhh-ccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 478999999999997 678888899999999999999998 55 333 47999999999999999877778878999999
Q ss_pred EeccCCcCCccc-hhhhhcCCCCCEEECcCCcccccCC---CCCCCcCcceeeccccccccCC
Q 042011 256 LQLGGNRFVGEI-PQSLSKCSSLEGLYLNNNSLSGNVN---VPSSPANTLFNLSQNSRRFTSS 314 (361)
Q Consensus 256 L~L~~n~l~~~~-~~~~~~l~~L~~L~l~~N~l~~~~~---~~~~~~~~L~~l~l~~N~~~~~ 314 (361)
|++++|++++.. +..+..+++|+.|++++|.+++..+ ..+..+++|++|++.+|.+...
T Consensus 100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 162 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEA 162 (168)
T ss_dssp EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBC
T ss_pred EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhc
Confidence 999999999643 2789999999999999999997554 3788999999999999998753
No 130
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.70 E-value=1.3e-16 Score=131.36 Aligned_cols=128 Identities=23% Similarity=0.282 Sum_probs=94.1
Q ss_pred CEEEccCCcCCccCChhhhccCCCccEEEecCCccccccCccccCCCCCCEEeccCCcCccccchhhhhCCCCCcEEEee
Q 042011 156 EFLDISNNNFRCHIPVEIGDILPSLKFFNISMNALDGSIPSSFGNMNFLRVLDLSNNQLTGEIPEHLAVGCVNLESLALS 235 (361)
Q Consensus 156 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~ 235 (361)
+.+++++++++ .+|..+. +++++|++++|.++ .+|..|..+++|++|++++|.++ .++...+..+++|++|+++
T Consensus 13 ~~l~~~~~~l~-~ip~~~~---~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls 86 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP---RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILS 86 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC---TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCCC-cCCCCCC---CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCC-EeCHhHccCCCCCCEEECC
Confidence 46777777776 6665543 46777777777776 56677777777777777777777 5555545577778888888
Q ss_pred cCCCCCcccccccCCCCCCEEeccCCcCCccchhhhhcCCCCCEEECcCCcccc
Q 042011 236 NNSLEGHMFSRNFNLTNLEWLQLGGNRFVGEIPQSLSKCSSLEGLYLNNNSLSG 289 (361)
Q Consensus 236 ~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 289 (361)
+|++++..+..|..+++|+.|++++|++++..+..|..+++|+.|++++|.+..
T Consensus 87 ~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 87 YNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp SSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 888877777777778888888888888876555667778888888888887764
No 131
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.69 E-value=2.3e-16 Score=128.10 Aligned_cols=132 Identities=21% Similarity=0.245 Sum_probs=100.0
Q ss_pred cCEEEccCCcCCccCChhhhccCCCccEEEecCCccccccCccccCCCCCCEEeccCCcCccccchhhhhCCCCCcEEEe
Q 042011 155 LEFLDISNNNFRCHIPVEIGDILPSLKFFNISMNALDGSIPSSFGNMNFLRVLDLSNNQLTGEIPEHLAVGCVNLESLAL 234 (361)
Q Consensus 155 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L 234 (361)
.+.+++++++++ .+|..+. ++|++|++++|.+++..+..|..+++|++|++++|.++ .++...+..+++|++|++
T Consensus 9 ~~~l~~~~~~l~-~~p~~~~---~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l 83 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGIP---SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYL 83 (177)
T ss_dssp TTEEECCSSCCS-SCCTTCC---TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred CCEEEecCCCCc-cCCCCCC---CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcce-EeChhHccCCCccCEEEC
Confidence 466777777776 6665443 57888888888887555566777888888888888887 666655557888888888
Q ss_pred ecCCCCCcccccccCCCCCCEEeccCCcCCccchhhhhcCCCCCEEECcCCcccccC
Q 042011 235 SNNSLEGHMFSRNFNLTNLEWLQLGGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGNV 291 (361)
Q Consensus 235 ~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 291 (361)
++|++++..+..+..+++|+.|++++|++++..+..+..+++|+.|++++|.+.+..
T Consensus 84 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 84 HENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred CCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence 888888766666778888888888888888666666777888888888888887543
No 132
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.69 E-value=5e-17 Score=159.99 Aligned_cols=117 Identities=24% Similarity=0.357 Sum_probs=54.5
Q ss_pred HhcCCCCcEEEecCCcccCCCCCCcCCCCCcCEEEccCCcCCccCChhhhccCCCccEEEecCCccccccCccccCCCCC
Q 042011 125 LENNTKLETLFLVNDSLTGPFRLPIHSHRWLEFLDISNNNFRCHIPVEIGDILPSLKFFNISMNALDGSIPSSFGNMNFL 204 (361)
Q Consensus 125 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L 204 (361)
+..++.|+.|++++|.+. .++..+..+++|++|++++|.++ .+|..+.. +++|++|+|++|.++ .+|..|..+++|
T Consensus 220 ~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~-l~~L~~L~Ls~N~l~-~lp~~~~~l~~L 295 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKN-LSNLRVLDLSHNRLT-SLPAELGSCFQL 295 (727)
T ss_dssp --CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGG-GTTCCEEECTTSCCS-SCCSSGGGGTTC
T ss_pred hccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhC-CCCCCEEeCcCCcCC-ccChhhcCCCCC
Confidence 444445555555555444 23333334445555555555554 44444433 445555555555554 444444455555
Q ss_pred CEEeccCCcCccccchhhhhCCCCCcEEEeecCCCCCcccccc
Q 042011 205 RVLDLSNNQLTGEIPEHLAVGCVNLESLALSNNSLEGHMFSRN 247 (361)
Q Consensus 205 ~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~ 247 (361)
++|++++|.++ .+|..+. .+++|+.|+|++|.+++..+..+
T Consensus 296 ~~L~L~~N~l~-~lp~~~~-~l~~L~~L~L~~N~l~~~~p~~~ 336 (727)
T 4b8c_D 296 KYFYFFDNMVT-TLPWEFG-NLCNLQFLGVEGNPLEKQFLKIL 336 (727)
T ss_dssp SEEECCSSCCC-CCCSSTT-SCTTCCCEECTTSCCCSHHHHHH
T ss_pred CEEECCCCCCC-ccChhhh-cCCCccEEeCCCCccCCCChHHH
Confidence 55555555544 4444432 44455555555555544444333
No 133
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.68 E-value=1.7e-16 Score=125.10 Aligned_cols=127 Identities=20% Similarity=0.202 Sum_probs=72.3
Q ss_pred CCcCEEEccCCcCC-ccCChhhhccCCCccEEEecCCccccccCccccCCCCCCEEeccCCcCccccchhhhhCCCCCcE
Q 042011 153 RWLEFLDISNNNFR-CHIPVEIGDILPSLKFFNISMNALDGSIPSSFGNMNFLRVLDLSNNQLTGEIPEHLAVGCVNLES 231 (361)
Q Consensus 153 ~~L~~L~l~~n~l~-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~ 231 (361)
++++.|++++|.++ +.+|..+.. +++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+. .+++|++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~-l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~l~~L~~ 92 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDE-FEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAE-KCPNLTH 92 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTT-CTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHH-HCTTCCE
T ss_pred ccCeEEEccCCcCChhHHHHHHhh-cCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhh-hCCCCCE
Confidence 44555666666554 344443332 55666666666666533 4455666666666666666633444332 4666666
Q ss_pred EEeecCCCCCc-ccccccCCCCCCEEeccCCcCCccch---hhhhcCCCCCEEECc
Q 042011 232 LALSNNSLEGH-MFSRNFNLTNLEWLQLGGNRFVGEIP---QSLSKCSSLEGLYLN 283 (361)
Q Consensus 232 L~L~~n~l~~~-~~~~~~~~~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~l~ 283 (361)
|++++|.+++. .+..+..+++|+.|++++|++++..+ ..+..+++|+.|+++
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 66666666653 22555666666666666666664433 356666666666654
No 134
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.68 E-value=1.4e-15 Score=139.51 Aligned_cols=203 Identities=17% Similarity=0.074 Sum_probs=120.1
Q ss_pred CchhhcCCCCccEEEecCCcccCCcChHHHhcCCCCcEEEecCCcccCCCCCCcCCCCCcCEEEccCCcCC---------
Q 042011 96 FPKFLYHQHDLALVDLSHIKMNGEFPTWLLENNTKLETLFLVNDSLTGPFRLPIHSHRWLEFLDISNNNFR--------- 166 (361)
Q Consensus 96 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--------- 166 (361)
...+|..|++|+.+.+..+. . .++...|.++.+|+.+++..+ +......+|..+..|+.+.+..+...
T Consensus 154 ~~~aF~~c~~L~~i~l~~~~-~-~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~i~~~~~~~~ 230 (394)
T 4fs7_A 154 GDEAFATCESLEYVSLPDSM-E-TLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYYLGDFALSKT 230 (394)
T ss_dssp CTTTTTTCTTCCEEECCTTC-C-EECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTC
T ss_pred chhhhcccCCCcEEecCCcc-c-eeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceEeehhhcccC
Confidence 34567788888888886543 2 455555778888888877654 33334455666666666555443221
Q ss_pred -----------ccCChhhhccCCCccEEEecCCccccccCccccCCCCCCEEeccCCcCccccchhhhhCCCCCcEEEee
Q 042011 167 -----------CHIPVEIGDILPSLKFFNISMNALDGSIPSSFGNMNFLRVLDLSNNQLTGEIPEHLAVGCVNLESLALS 235 (361)
Q Consensus 167 -----------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~ 235 (361)
..+....+..+..++.+.+..+... .....|..+..++.+..... .++...+..+.+|+.+.+.
T Consensus 231 ~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~----~i~~~~F~~~~~L~~i~l~ 305 (394)
T 4fs7_A 231 GVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSV----IVPEKTFYGCSSLTEVKLL 305 (394)
T ss_dssp CCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSS----EECTTTTTTCTTCCEEEEC
T ss_pred CCceEEECCCceecccccccccccceeEEcCCCcce-eeccccccccccceeccCce----eeccccccccccccccccc
Confidence 0222223333444444444443322 33344455555555544432 2344445567777777775
Q ss_pred cCCCCCcccccccCCCCCCEEeccCCcCCccchhhhhcCCCCCEEECcCCcccccCCCCCCCcCcceeeccccc
Q 042011 236 NNSLEGHMFSRNFNLTNLEWLQLGGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGNVNVPSSPANTLFNLSQNSR 309 (361)
Q Consensus 236 ~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~L~~l~l~~N 309 (361)
.+ ++.+....|.++++|+.+++..+ ++.....+|.++.+|+.+++..+ ++.....+|.++.+|+.+++..+
T Consensus 306 ~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 306 DS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp TT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred cc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 43 55556667777777887777543 55455677777778888877766 65555667777777777777543
No 135
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.67 E-value=6.8e-17 Score=127.32 Aligned_cols=129 Identities=22% Similarity=0.197 Sum_probs=109.8
Q ss_pred CCCccEEEecCCccc-cccCccccCCCCCCEEeccCCcCccccchhhhhCCCCCcEEEeecCCCCCcccccccCCCCCCE
Q 042011 177 LPSLKFFNISMNALD-GSIPSSFGNMNFLRVLDLSNNQLTGEIPEHLAVGCVNLESLALSNNSLEGHMFSRNFNLTNLEW 255 (361)
Q Consensus 177 l~~L~~L~L~~n~l~-~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~ 255 (361)
.++++.|++++|.++ +.+|..+..+++|++|++++|.++ .+ ..+ ..+++|++|++++|.+++..+..+..+++|+.
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~-~~-~~~-~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SI-ANL-PKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCC-CC-TTC-CCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCC-Cc-hhh-hcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 468999999999998 678888899999999999999998 44 333 47899999999999999877777878999999
Q ss_pred EeccCCcCCcc-chhhhhcCCCCCEEECcCCcccccCC---CCCCCcCcceeecccc
Q 042011 256 LQLGGNRFVGE-IPQSLSKCSSLEGLYLNNNSLSGNVN---VPSSPANTLFNLSQNS 308 (361)
Q Consensus 256 L~L~~n~l~~~-~~~~~~~l~~L~~L~l~~N~l~~~~~---~~~~~~~~L~~l~l~~ 308 (361)
|++++|++++. .+..+..+++|++|++++|.+++..+ ..+..+++|+.|++++
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 99999999864 34788999999999999999987655 4678889999998863
No 136
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.65 E-value=5.8e-16 Score=125.54 Aligned_cols=134 Identities=22% Similarity=0.201 Sum_probs=89.5
Q ss_pred cCCCCCcCEEEccCCcCCccCChhhhccCCCccEEEecCCccccccCccccCCCCCCEEeccCCcCccccchhhhhCCCC
Q 042011 149 IHSHRWLEFLDISNNNFRCHIPVEIGDILPSLKFFNISMNALDGSIPSSFGNMNFLRVLDLSNNQLTGEIPEHLAVGCVN 228 (361)
Q Consensus 149 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~ 228 (361)
+..+++|++|++++|.++ .++. +....++|++|++++|.+++. ..+..+++|++|++++|.++ .+|..++..+++
T Consensus 15 ~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~ 89 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPD 89 (176)
T ss_dssp EECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC-EECSCHHHHCTT
T ss_pred cCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCccc-ccCcchhhcCCC
Confidence 445667777777777776 5543 444345788888888877743 56777777888888888777 566555446777
Q ss_pred CcEEEeecCCCCCccc-ccccCCCCCCEEeccCCcCCccchh----hhhcCCCCCEEECcCCccc
Q 042011 229 LESLALSNNSLEGHMF-SRNFNLTNLEWLQLGGNRFVGEIPQ----SLSKCSSLEGLYLNNNSLS 288 (361)
Q Consensus 229 L~~L~L~~n~l~~~~~-~~~~~~~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~l~~N~l~ 288 (361)
|++|++++|+++.... ..+..+++|+.|++++|+++. .|. .+..+++|+.||+++|.+.
T Consensus 90 L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 90 LTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCHH
Confidence 7777777777765322 256667777777777777763 343 3666777777777776654
No 137
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.64 E-value=9e-16 Score=123.64 Aligned_cols=117 Identities=20% Similarity=0.130 Sum_probs=96.5
Q ss_pred CCCEEeccCCcCccccchhhhhCCCCCcEEEeecCCCCCcccccccCCCCCCEEeccCCcCCccchhhhhcCCCCCEEEC
Q 042011 203 FLRVLDLSNNQLTGEIPEHLAVGCVNLESLALSNNSLEGHMFSRNFNLTNLEWLQLGGNRFVGEIPQSLSKCSSLEGLYL 282 (361)
Q Consensus 203 ~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 282 (361)
..+++++++|.++ .+|..+ .+++++|++++|++++..+..|..+++|+.|++++|++++..+..|..+++|++|++
T Consensus 10 ~~~~l~~s~n~l~-~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 85 (170)
T 3g39_A 10 SGTTVDCSGKSLA-SVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSL 85 (170)
T ss_dssp ETTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEEeCCCCcC-ccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEEC
Confidence 3567888888887 777654 367888999999988877888888999999999999998777777888999999999
Q ss_pred cCCcccccCCCCCCCcCcceeeccccccccCCcc-ccccccc
Q 042011 283 NNNSLSGNVNVPSSPANTLFNLSQNSRRFTSSIS-HSHLLNL 323 (361)
Q Consensus 283 ~~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~~-~~~~~~~ 323 (361)
++|+|++..+..|..+++|++|++++|+|++.++ ..++..|
T Consensus 86 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~~l~~l~~~ 127 (170)
T 3g39_A 86 NDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACSDILYLSRW 127 (170)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBGGGHHHHHH
T ss_pred CCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCchhHHHHHHH
Confidence 9999998777778899999999999999998876 4444444
No 138
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.61 E-value=2.5e-15 Score=121.84 Aligned_cols=134 Identities=15% Similarity=0.146 Sum_probs=85.2
Q ss_pred hcCCCCccEEEecCCcccCCcChHHHhcCCCCcEEEecCCcccCCCCCCcCCCCCcCEEEccCCcCCccCChhhhccCCC
Q 042011 100 LYHQHDLALVDLSHIKMNGEFPTWLLENNTKLETLFLVNDSLTGPFRLPIHSHRWLEFLDISNNNFRCHIPVEIGDILPS 179 (361)
Q Consensus 100 l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 179 (361)
+..+.+|+.|++++|.++ .++.. ....++|++|++++|.+++. ..+..+++|++|++++|+++ .+|..++..+++
T Consensus 15 ~~~~~~L~~L~l~~n~l~-~i~~~-~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~ 89 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIP-VIENL-GATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPD 89 (176)
T ss_dssp EECTTSCEEEECTTSCCC-SCCCG-GGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC-EECSCHHHHCTT
T ss_pred cCCcCCceEEEeeCCCCc-hhHHh-hhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCccc-ccCcchhhcCCC
Confidence 455677777777777776 44432 33334777777777777653 56667777777777777776 555555444677
Q ss_pred ccEEEecCCccccccCc--cccCCCCCCEEeccCCcCccccchh---hhhCCCCCcEEEeecCCCC
Q 042011 180 LKFFNISMNALDGSIPS--SFGNMNFLRVLDLSNNQLTGEIPEH---LAVGCVNLESLALSNNSLE 240 (361)
Q Consensus 180 L~~L~L~~n~l~~~~~~--~l~~~~~L~~L~l~~n~l~~~~~~~---~~~~~~~L~~L~L~~n~l~ 240 (361)
|++|++++|.++ .+|. .+..+++|++|++++|.+. .+|.. .+..+++|+.|++++|...
T Consensus 90 L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 90 LTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 777777777775 4443 5666677777777777766 55543 2235666666666665543
No 139
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.60 E-value=2.9e-15 Score=121.03 Aligned_cols=116 Identities=19% Similarity=0.171 Sum_probs=93.0
Q ss_pred CCEEeccCCcCccccchhhhhCCCCCcEEEeecCCCCCcccccccCCCCCCEEeccCCcCCccchhhhhcCCCCCEEECc
Q 042011 204 LRVLDLSNNQLTGEIPEHLAVGCVNLESLALSNNSLEGHMFSRNFNLTNLEWLQLGGNRFVGEIPQSLSKCSSLEGLYLN 283 (361)
Q Consensus 204 L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 283 (361)
-+.+++++|.++ .+|..+ .++|++|++++|++++..+..+..+++|+.|+|++|++++..+..|..+++|+.|+++
T Consensus 14 ~~~l~~~~n~l~-~iP~~~---~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPAGI---PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp SSEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CcEEEeCCCCCC-ccCCCc---CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECC
Confidence 367888888887 777654 3678888888888888778888888899999999999887666667888999999999
Q ss_pred CCcccccCCCCCCCcCcceeeccccccccCCcc-ccccccc
Q 042011 284 NNSLSGNVNVPSSPANTLFNLSQNSRRFTSSIS-HSHLLNL 323 (361)
Q Consensus 284 ~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~~-~~~~~~~ 323 (361)
+|+|++..+..|..+++|++|++++|+|.+.++ ..++..|
T Consensus 90 ~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~~~~~l~~~ 130 (174)
T 2r9u_A 90 DNHLKSIPRGAFDNLKSLTHIYLYNNPWDCECRDIMYLRNW 130 (174)
T ss_dssp SSCCCCCCTTTTTTCTTCSEEECCSSCBCTTBGGGHHHHHH
T ss_pred CCccceeCHHHhccccCCCEEEeCCCCcccccccHHHHHHH
Confidence 999987666678888999999999999988775 3344444
No 140
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.60 E-value=1.6e-17 Score=137.50 Aligned_cols=108 Identities=29% Similarity=0.327 Sum_probs=47.4
Q ss_pred CCCccEEEecCCccccccCccccCCCCCCEEeccCCcCccccchhhhhCCCCCcEEEeecCCCCCcccccccCCCCCCEE
Q 042011 177 LPSLKFFNISMNALDGSIPSSFGNMNFLRVLDLSNNQLTGEIPEHLAVGCVNLESLALSNNSLEGHMFSRNFNLTNLEWL 256 (361)
Q Consensus 177 l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L 256 (361)
+++|++|++++|.+++ +| .+..+++|++|++++|.++ .+|..+. .+++|++|++++|++++. + .+..+++|+.|
T Consensus 47 l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~-~~~~L~~L~L~~N~l~~l-~-~~~~l~~L~~L 120 (198)
T 1ds9_A 47 LKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDA-VADTLEELWISYNQIASL-S-GIEKLVNLRVL 120 (198)
T ss_dssp TTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHH-HHHHCSEEEEEEEECCCH-H-HHHHHHHSSEE
T ss_pred CCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhh-cCCcCCEEECcCCcCCcC-C-ccccCCCCCEE
Confidence 4444444444444442 33 3444444444444444444 3443222 234444444444444441 1 33444445555
Q ss_pred eccCCcCCccch-hhhhcCCCCCEEECcCCccccc
Q 042011 257 QLGGNRFVGEIP-QSLSKCSSLEGLYLNNNSLSGN 290 (361)
Q Consensus 257 ~L~~n~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~ 290 (361)
++++|++++..+ ..+..+++|+.|++++|.+++.
T Consensus 121 ~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~ 155 (198)
T 1ds9_A 121 YMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND 155 (198)
T ss_dssp EESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred ECCCCcCCchhHHHHHhcCCCCCEEEecCCccccc
Confidence 555555443211 2444455555555555555443
No 141
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.60 E-value=1e-17 Score=138.73 Aligned_cols=156 Identities=21% Similarity=0.250 Sum_probs=128.6
Q ss_pred HhcCCCCcEEEecCCcccCCCCC------CcCCCCCcCEEEccCCcCCccCChhhhccCCCccEEEecCCccccccCccc
Q 042011 125 LENNTKLETLFLVNDSLTGPFRL------PIHSHRWLEFLDISNNNFRCHIPVEIGDILPSLKFFNISMNALDGSIPSSF 198 (361)
Q Consensus 125 ~~~~~~L~~L~l~~n~l~~~~~~------~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l 198 (361)
+.....++.++++.+.+.+..|. .+..+++|++|++++|+++ .+| .+.. +++|++|++++|.++ .+|..+
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~-~l~-~~~~-l~~L~~L~l~~n~l~-~l~~~~ 89 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE-KIS-SLSG-MENLRILSLGRNLIK-KIENLD 89 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEES-CCC-CHHH-HTTCCEEEEEEEEEC-SCSSHH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCc-ccc-cccc-CCCCCEEECCCCCcc-cccchh
Confidence 45677888888888888877666 7888999999999999998 677 5544 899999999999998 678777
Q ss_pred cCCCCCCEEeccCCcCccccchhhhhCCCCCcEEEeecCCCCCccc-ccccCCCCCCEEeccCCcCCccchh--------
Q 042011 199 GNMNFLRVLDLSNNQLTGEIPEHLAVGCVNLESLALSNNSLEGHMF-SRNFNLTNLEWLQLGGNRFVGEIPQ-------- 269 (361)
Q Consensus 199 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~~~~L~~L~L~~n~l~~~~~~-------- 269 (361)
..+++|++|++++|.++ .+| .+. .+++|++|++++|++++... ..+..+++|+.|++++|++.+..|.
T Consensus 90 ~~~~~L~~L~L~~N~l~-~l~-~~~-~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~ 166 (198)
T 1ds9_A 90 AVADTLEELWISYNQIA-SLS-GIE-KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYR 166 (198)
T ss_dssp HHHHHCSEEEEEEEECC-CHH-HHH-HHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHH
T ss_pred hcCCcCCEEECcCCcCC-cCC-ccc-cCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHH
Confidence 77899999999999998 666 343 68999999999999987443 5788999999999999999766543
Q ss_pred --hhhcCCCCCEEECcCCcccc
Q 042011 270 --SLSKCSSLEGLYLNNNSLSG 289 (361)
Q Consensus 270 --~~~~l~~L~~L~l~~N~l~~ 289 (361)
.+..+++|+.|| +|.++.
T Consensus 167 ~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 167 IEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp HHHHHHCSSCSEEC--CGGGTT
T ss_pred HHHHHhCCCcEEEC--CcccCH
Confidence 377888999886 666653
No 142
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.58 E-value=1.2e-13 Score=126.60 Aligned_cols=112 Identities=13% Similarity=0.218 Sum_probs=76.7
Q ss_pred CccccCCCCCCEEeccCCcCccccchhhhhCCCCCcEEEeecCCCCCcccccccCCCCCCEEeccCCcCCccchhhhhcC
Q 042011 195 PSSFGNMNFLRVLDLSNNQLTGEIPEHLAVGCVNLESLALSNNSLEGHMFSRNFNLTNLEWLQLGGNRFVGEIPQSLSKC 274 (361)
Q Consensus 195 ~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l 274 (361)
..+|.++..|+.+.+..+. . .+....|.+++.|+.+.+. +.++.+....|.++.+|+.+++..+ ++.....+|.++
T Consensus 258 ~~aF~~c~~L~~i~lp~~~-~-~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C 333 (394)
T 4gt6_A 258 THAFDSCAYLASVKMPDSV-V-SIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGC 333 (394)
T ss_dssp TTTTTTCSSCCEEECCTTC-C-EECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTC
T ss_pred cceeeecccccEEeccccc-c-eecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCC
Confidence 3467777778887776543 2 4555666677778887775 4566666677777788888887654 554556777778
Q ss_pred CCCCEEECcCCcccccCCCCCCCcCcceeeccccccc
Q 042011 275 SSLEGLYLNNNSLSGNVNVPSSPANTLFNLSQNSRRF 311 (361)
Q Consensus 275 ~~L~~L~l~~N~l~~~~~~~~~~~~~L~~l~l~~N~~ 311 (361)
.+|+.+.+..+ ++.....+|.++.+|+.+++.++..
T Consensus 334 ~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~ 369 (394)
T 4gt6_A 334 EQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRS 369 (394)
T ss_dssp TTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHH
T ss_pred CCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCcee
Confidence 88888887654 5555556777788888887777643
No 143
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.58 E-value=6e-14 Score=128.56 Aligned_cols=286 Identities=13% Similarity=0.046 Sum_probs=191.0
Q ss_pred ccCcCChhhhhccCCCCeEeCcCCcccccCCcccccCCCCCcEEEccCCCcccccccccccccCcccccEEeccCCCCCC
Q 042011 14 LTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLIAPNFQLNSLSLSSDYGDG 93 (361)
Q Consensus 14 i~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 93 (361)
++ .|...+|.+|.+|+.+.+..+ ++ .+...+|.++++|+.+++..+ ++...... +..+.+|+.+.+ .. .+.
T Consensus 59 Vt-sIg~~AF~~c~~L~~i~lp~~-i~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~a---F~~c~~L~~i~~-p~-~l~ 129 (394)
T 4fs7_A 59 VV-SIGYAAFQGCRKVTEIKIPST-VR-EIGEFAFENCSKLEIINIPDS-VKMIGRCT---FSGCYALKSILL-PL-MLK 129 (394)
T ss_dssp EE-EECTTTTTTCTTEEEEECCTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTT---TTTCTTCCCCCC-CT-TCC
T ss_pred Ee-EhHHHHhhCCCCceEEEeCCC-cc-CcchhHhhCCCCCcEEEeCCC-ceEccchh---hcccccchhhcc-cC-cee
Confidence 55 677779999999999999754 66 677789999999999999865 44333333 667778888776 32 344
Q ss_pred CCCchhhcCCCCccEEEecCCcccCCcChHHHhcCCCCcEEEecCCcccCCCCCCcCCCCCcCEEEccCCcCCccCChhh
Q 042011 94 FIFPKFLYHQHDLALVDLSHIKMNGEFPTWLLENNTKLETLFLVNDSLTGPFRLPIHSHRWLEFLDISNNNFRCHIPVEI 173 (361)
Q Consensus 94 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 173 (361)
.....+|..+...+....... . .+....|.++++|+.+.+..+. .......|..+.+|+.+.+..+ ++ .++...
T Consensus 130 ~i~~~aF~~~~~~~~~~~~~~--~-~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~-~I~~~~ 203 (394)
T 4fs7_A 130 SIGVEAFKGCDFKEITIPEGV--T-VIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LK-IIRDYC 203 (394)
T ss_dssp EECTTTTTTCCCSEEECCTTC--C-EECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CC-EECTTT
T ss_pred eecceeeecccccccccCccc--c-ccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ce-EeCchh
Confidence 455667777765444433332 2 3444558899999999997653 3355678899999999999876 44 566666
Q ss_pred hccCCCccEEEecCCccc---------------------cccCccccCCCCCCEEeccCCcCccccchhhhhCCCCCcEE
Q 042011 174 GDILPSLKFFNISMNALD---------------------GSIPSSFGNMNFLRVLDLSNNQLTGEIPEHLAVGCVNLESL 232 (361)
Q Consensus 174 ~~~l~~L~~L~L~~n~l~---------------------~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L 232 (361)
+..++.|+.+.+..+... ......|..+..++.+.+..+.. .+....+..+..++..
T Consensus 204 F~~~~~L~~i~~~~~~~~i~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~--~i~~~~F~~~~~l~~~ 281 (394)
T 4fs7_A 204 FAECILLENMEFPNSLYYLGDFALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKL--RIGGSLFYNCSGLKKV 281 (394)
T ss_dssp TTTCTTCCBCCCCTTCCEECTTTTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTC--EECSCTTTTCTTCCEE
T ss_pred hccccccceeecCCCceEeehhhcccCCCceEEECCCceecccccccccccceeEEcCCCcc--eeecccccccccccee
Confidence 665667776665544321 11122344455555555544322 3334444455556655
Q ss_pred EeecCCCCCcccccccCCCCCCEEeccCCcCCccchhhhhcCCCCCEEECcCCcccccCCCCCCCcCcceeecccccccc
Q 042011 233 ALSNNSLEGHMFSRNFNLTNLEWLQLGGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGNVNVPSSPANTLFNLSQNSRRFT 312 (361)
Q Consensus 233 ~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~L~~l~l~~N~~~ 312 (361)
......+ ....|..+.+|+.+.+..+ ++.....+|.++.+|+.+++.++ ++.....+|.++.+|+.+.+..+ ++
T Consensus 282 ~~~~~~i---~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~ 355 (394)
T 4fs7_A 282 IYGSVIV---PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LR 355 (394)
T ss_dssp EECSSEE---CTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CC
T ss_pred ccCceee---ccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-cc
Confidence 5544332 3445778889999998765 66566788999999999999755 77666788999999999999876 43
Q ss_pred CCccccccccc
Q 042011 313 SSISHSHLLNL 323 (361)
Q Consensus 313 ~~~~~~~~~~~ 323 (361)
.+....|.+.
T Consensus 356 -~I~~~aF~~C 365 (394)
T 4fs7_A 356 -KIGANAFQGC 365 (394)
T ss_dssp -EECTTTBTTC
T ss_pred -EehHHHhhCC
Confidence 3444445443
No 144
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.50 E-value=1.1e-13 Score=111.39 Aligned_cols=105 Identities=26% Similarity=0.294 Sum_probs=62.8
Q ss_pred cCEEEccCCcCCccCChhhhccCCCccEEEecCCccccccCccccCCCCCCEEeccCCcCccccchhhhhCCCCCcEEEe
Q 042011 155 LEFLDISNNNFRCHIPVEIGDILPSLKFFNISMNALDGSIPSSFGNMNFLRVLDLSNNQLTGEIPEHLAVGCVNLESLAL 234 (361)
Q Consensus 155 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L 234 (361)
.+.+++++|+++ .+|..+. +++++|++++|.+++..+..|..+++|++|++++|.++ .+|...+..+++|++|++
T Consensus 11 ~~~l~~s~n~l~-~ip~~~~---~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L 85 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGIP---TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSL 85 (170)
T ss_dssp TTEEECTTSCCS-SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred CCEEEeCCCCcC-ccCccCC---CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcC-ccChhhccCCCCCCEEEC
Confidence 456666666666 5665442 46666666666666555556666666666666666666 555544445566666666
Q ss_pred ecCCCCCcccccccCCCCCCEEeccCCcCC
Q 042011 235 SNNSLEGHMFSRNFNLTNLEWLQLGGNRFV 264 (361)
Q Consensus 235 ~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~ 264 (361)
++|++++..+..+..+++|+.|++++|++.
T Consensus 86 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 86 NDNQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 666665544445555566666666666554
No 145
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.49 E-value=1.7e-12 Score=118.83 Aligned_cols=130 Identities=18% Similarity=0.242 Sum_probs=74.0
Q ss_pred hhccCCCccEEEecCCccccccCccccCCCCCCEEeccCCcCccccchhhhhCCCCCcEEEeecCCCCCcccccccCCCC
Q 042011 173 IGDILPSLKFFNISMNALDGSIPSSFGNMNFLRVLDLSNNQLTGEIPEHLAVGCVNLESLALSNNSLEGHMFSRNFNLTN 252 (361)
Q Consensus 173 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~ 252 (361)
.|..+..|+.+.+..+... ....+|.+++.|+.+.+. +.++ .++...|.++.+|+.+.+..+ ++.+....|.+|.+
T Consensus 260 aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~-~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~ 335 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRIT-ELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQ 335 (394)
T ss_dssp TTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTT
T ss_pred eeeecccccEEecccccce-ecCcccccccccccccCC-Cccc-ccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCC
Confidence 3444556666666544332 444566677777777775 3455 666666666777777777543 55555666777777
Q ss_pred CCEEeccCCcCCccchhhhhcCCCCCEEECcCCcccccCCCCCCCcCcceeecccccc
Q 042011 253 LEWLQLGGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGNVNVPSSPANTLFNLSQNSRR 310 (361)
Q Consensus 253 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~L~~l~l~~N~ 310 (361)
|+.+.+..+ ++.....+|.++++|+.+++.++.... ..+.....|+.+.+..|.
T Consensus 336 L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~ 389 (394)
T 4gt6_A 336 LERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGS 389 (394)
T ss_dssp CCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC---------
T ss_pred CCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCC
Confidence 777777543 554556677777777777777665432 244555666666655443
No 146
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.48 E-value=2.1e-13 Score=110.07 Aligned_cols=104 Identities=22% Similarity=0.261 Sum_probs=65.9
Q ss_pred CEEEccCCcCCccCChhhhccCCCccEEEecCCccccccCccccCCCCCCEEeccCCcCccccchhhhhCCCCCcEEEee
Q 042011 156 EFLDISNNNFRCHIPVEIGDILPSLKFFNISMNALDGSIPSSFGNMNFLRVLDLSNNQLTGEIPEHLAVGCVNLESLALS 235 (361)
Q Consensus 156 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~ 235 (361)
+.+++++|+++ .+|..+. ++|++|++++|.+++..|..|..+++|++|++++|.++ .+|...+..+++|++|+++
T Consensus 15 ~~l~~~~n~l~-~iP~~~~---~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP---TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-AIPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred cEEEeCCCCCC-ccCCCcC---CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCC-ccChhHhCCcchhhEEECC
Confidence 56677777765 6665543 46777777777776555666666667777777777666 5555544456666666666
Q ss_pred cCCCCCcccccccCCCCCCEEeccCCcCC
Q 042011 236 NNSLEGHMFSRNFNLTNLEWLQLGGNRFV 264 (361)
Q Consensus 236 ~n~l~~~~~~~~~~~~~L~~L~L~~n~l~ 264 (361)
+|++++..+..+..+++|+.|++++|++.
T Consensus 90 ~N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 90 DNHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp SSCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred CCccceeCHHHhccccCCCEEEeCCCCcc
Confidence 66666554444556666666666666655
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.46 E-value=1.6e-13 Score=123.53 Aligned_cols=115 Identities=19% Similarity=0.151 Sum_probs=87.1
Q ss_pred EEeccCC-cCccccchhhhhCCCCCcEEEeec-CCCCCcccccccCCCCCCEEeccCCcCCccchhhhhcCCCCCEEECc
Q 042011 206 VLDLSNN-QLTGEIPEHLAVGCVNLESLALSN-NSLEGHMFSRNFNLTNLEWLQLGGNRFVGEIPQSLSKCSSLEGLYLN 283 (361)
Q Consensus 206 ~L~l~~n-~l~~~~~~~~~~~~~~L~~L~L~~-n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 283 (361)
.++.+++ .++ .+|. +. .+++|++|+|++ |.+++..+..|..+++|+.|+|++|+|++..|..|..+++|+.|+|+
T Consensus 12 ~v~~~~~n~l~-~ip~-l~-~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LP-GAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp CEECCSSCCCT-TTTT-SC-SCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred EEEcCCCCCCC-ccCC-CC-CCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 4567776 677 6777 43 677788888875 88877777778888888888888888887777788888888888888
Q ss_pred CCcccccCCCCCCCcCcceeeccccccccCCcccccccccc
Q 042011 284 NNSLSGNVNVPSSPANTLFNLSQNSRRFTSSISHSHLLNLH 324 (361)
Q Consensus 284 ~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~~~~~~~~~~ 324 (361)
+|+|++..+..|..++ |+.|++.+|+|.+.+...++..|.
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~l~~~~~~~ 128 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLHCSCALRWLQRWE 128 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCCCCGGGHHHHHHH
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCccCCCccHHHHHHH
Confidence 8888876666666555 888888888888877766666553
No 148
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.46 E-value=6.2e-15 Score=133.64 Aligned_cols=183 Identities=17% Similarity=0.113 Sum_probs=102.7
Q ss_pred CCCcEEEecCCcccCCCCCC----cC-CCCCcCEEEccCCcCCccCChhhhccCCCccEEEecCCccccccCccc-----
Q 042011 129 TKLETLFLVNDSLTGPFRLP----IH-SHRWLEFLDISNNNFRCHIPVEIGDILPSLKFFNISMNALDGSIPSSF----- 198 (361)
Q Consensus 129 ~~L~~L~l~~n~l~~~~~~~----~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l----- 198 (361)
+.|++|++++|.++...... +. ..++|++|++++|.+++.....+...+++|+.|++++|.++......+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 45555666655554321111 11 124677777777766533333444445567777777777753322222
Q ss_pred cCCCCCCEEeccCCcCccc----cchhhhhCCCCCcEEEeecCCCCCcc----cccccCCCCCCEEeccCCcCCcc----
Q 042011 199 GNMNFLRVLDLSNNQLTGE----IPEHLAVGCVNLESLALSNNSLEGHM----FSRNFNLTNLEWLQLGGNRFVGE---- 266 (361)
Q Consensus 199 ~~~~~L~~L~l~~n~l~~~----~~~~~~~~~~~L~~L~L~~n~l~~~~----~~~~~~~~~L~~L~L~~n~l~~~---- 266 (361)
...++|++|++++|.+++. ++..+ ...++|++|+|++|.+++.. ...+..+++|+.|+|++|.+++.
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L-~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGL-AGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHH-HTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHH-hcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 2456777788877777622 22222 25677888888888776432 44455667888888888888753
Q ss_pred chhhhhcCCCCCEEECcCCcccccCCCCCC---CcC--cceeec--ccccccc
Q 042011 267 IPQSLSKCSSLEGLYLNNNSLSGNVNVPSS---PAN--TLFNLS--QNSRRFT 312 (361)
Q Consensus 267 ~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~---~~~--~L~~l~--l~~N~~~ 312 (361)
++..+...++|++|++++|.|++.....+. ... .++.+. +.+|.+.
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS 283 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred HHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence 334455668888888888888754332221 112 166666 6666554
No 149
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.36 E-value=9.1e-11 Score=106.77 Aligned_cols=283 Identities=12% Similarity=0.108 Sum_probs=141.8
Q ss_pred CCeEeCCCccccCcCChhhhhccCCCCeEeCcCCcccccCCcccccCCCCCcEEEccCCCcccccccccccccCcccccE
Q 042011 4 LRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLIAPNFQLNS 83 (361)
Q Consensus 4 L~~L~L~~n~i~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~ 83 (361)
|+.+.+.. .++ .|++.+|.+|.+|+.+++..+ ++ .+...+|.++ +|+.+.+..+ ++...... |. ..+|+.
T Consensus 48 i~~v~ip~-~vt-~Ig~~aF~~C~~L~~I~lp~~-v~-~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~a---F~-~~~L~~ 117 (379)
T 4h09_A 48 ISEVRVNS-GIT-SIGEANFNSCYNMTKVTVAST-VT-SIGDGAFADT-KLQSYTGMER-VKKFGDYV---FQ-GTDLDD 117 (379)
T ss_dssp CSEEEECT-TEE-EECTTTTTTCTTCCEEEECTT-CC-EECTTTTTTC-CCCEEEECTT-CCEECTTT---TT-TCCCSE
T ss_pred CEEEEeCC-Ccc-ChHHHHhhCCCCCCEEEeCCc-ce-EechhhhcCC-CCceEECCce-eeEeccce---ec-cCCccc
Confidence 44444432 244 455556666666666666543 43 4444555554 4555555432 22222111 22 225666
Q ss_pred EeccCCCCCCCCCchhhcCCCCccEEEecCCcccCCcChHHHhcCCCCcEEEecCCcccC------------CCCCCcCC
Q 042011 84 LSLSSDYGDGFIFPKFLYHQHDLALVDLSHIKMNGEFPTWLLENNTKLETLFLVNDSLTG------------PFRLPIHS 151 (361)
Q Consensus 84 L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~------------~~~~~~~~ 151 (361)
+.+ ... +.......|..+ .++.+.+..+ ++ .+....|..+..++.+.+..+.... .....+..
T Consensus 118 i~l-p~~-~~~i~~~~F~~~-~l~~~~~~~~-v~-~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (379)
T 4h09_A 118 FEF-PGA-TTEIGNYIFYNS-SVKRIVIPKS-VT-TIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPA 192 (379)
T ss_dssp EEC-CTT-CCEECTTTTTTC-CCCEEEECTT-CC-EECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCT
T ss_pred ccC-CCc-cccccccccccc-eeeeeeccce-ee-ccccchhcccccccccccccccceeecccceecccccceeccccc
Confidence 655 222 222222333333 3444443322 11 2222234555566555554332110 00111222
Q ss_pred CCCcCEEEccCCcCCccCChhhhccCCCccEEEecCCccccccCccccCCCCCCEEeccCCcCccccchhhhhCCCCCcE
Q 042011 152 HRWLEFLDISNNNFRCHIPVEIGDILPSLKFFNISMNALDGSIPSSFGNMNFLRVLDLSNNQLTGEIPEHLAVGCVNLES 231 (361)
Q Consensus 152 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~ 231 (361)
...+..+.+..... .+....+.....++.+.+..+ +.......|.++..|+.+.+..+ ++ .+....+..+.+|+.
T Consensus 193 ~~~~~~~~~~~~~~--~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~-~I~~~aF~~~~~l~~ 267 (379)
T 4h09_A 193 AKTGTEFTIPSTVK--TVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VT-SIGSFLLQNCTALKT 267 (379)
T ss_dssp TCCCSEEECCTTCC--EECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CC-EECTTTTTTCTTCCE
T ss_pred ccccccccccccee--EEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-cc-EeCccccceeehhcc
Confidence 23334443333221 122233333456666666543 22234455666777777777654 44 555566666777777
Q ss_pred EEeecCCCCCcccccccCCCCCCEEeccCCcCCccchhhhhcCCCCCEEECcCCcccccCCCCCCCcCcceeecccc
Q 042011 232 LALSNNSLEGHMFSRNFNLTNLEWLQLGGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGNVNVPSSPANTLFNLSQNS 308 (361)
Q Consensus 232 L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~L~~l~l~~ 308 (361)
+.+.. .+..+....|.++++|+.+.+.++.++.....+|.++.+|+.+.+..+ ++.....+|.++.+|+.+.+..
T Consensus 268 i~l~~-~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 268 LNFYA-KVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp EEECC-CCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred ccccc-cceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECC
Confidence 77644 355555566677777777777777666555667777777777777644 5545556677777777776654
No 150
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.36 E-value=2.8e-14 Score=129.37 Aligned_cols=159 Identities=16% Similarity=0.082 Sum_probs=93.1
Q ss_pred CCCcEEEecCCcccCCCCCC-cCCCCCcCEEEccCCcCCccCChhhh----ccCCCccEEEecCCcccc----ccCcccc
Q 042011 129 TKLETLFLVNDSLTGPFRLP-IHSHRWLEFLDISNNNFRCHIPVEIG----DILPSLKFFNISMNALDG----SIPSSFG 199 (361)
Q Consensus 129 ~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~----~~l~~L~~L~L~~n~l~~----~~~~~l~ 199 (361)
++|++|++++|.++...... ...+++|++|++++|.+++.....+. ...++|++|++++|.++. .++..+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 45556666655554211111 12234567777777776532222222 224678888888887753 2344456
Q ss_pred CCCCCCEEeccCCcCcccc----chhhhhCCCCCcEEEeecCCCCCc----ccccccCCCCCCEEeccCCcCCccchhhh
Q 042011 200 NMNFLRVLDLSNNQLTGEI----PEHLAVGCVNLESLALSNNSLEGH----MFSRNFNLTNLEWLQLGGNRFVGEIPQSL 271 (361)
Q Consensus 200 ~~~~L~~L~l~~n~l~~~~----~~~~~~~~~~L~~L~L~~n~l~~~----~~~~~~~~~~L~~L~L~~n~l~~~~~~~~ 271 (361)
..++|++|++++|.+++.. ...+ ...++|++|++++|.++.. ....+...++|++|+|++|.|++.....+
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L-~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L 259 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQL-DRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVL 259 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHG-GGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHH
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHH-hcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHH
Confidence 6778888888888876322 2222 2567888888888888753 23344466889999999999887666666
Q ss_pred hcCCC-----CCEEE--CcCCccc
Q 042011 272 SKCSS-----LEGLY--LNNNSLS 288 (361)
Q Consensus 272 ~~l~~-----L~~L~--l~~N~l~ 288 (361)
..+.. |+.+. +..+.++
T Consensus 260 ~~~~~~~~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 260 RDLGGAAEGGARVVVSLTEGTAVS 283 (372)
T ss_dssp HHCC------CEEECCCC----CH
T ss_pred HHHhcCCCccchhhHhhhcCCccC
Confidence 55421 66666 5666554
No 151
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.31 E-value=2.9e-10 Score=103.41 Aligned_cols=280 Identities=11% Similarity=0.063 Sum_probs=197.4
Q ss_pred CCCCCeEeCCCccccCcCChhhhhccCCCCeEeCcCCcccccCCcccccCCCCCcEEEccCCCcccccccccccccCccc
Q 042011 1 MTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLIAPNFQ 80 (361)
Q Consensus 1 l~~L~~L~L~~n~i~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~ 80 (361)
|++|+.+++..+ ++ .|++.+|.++ +|+.+.+..+ ++ .+...+|..+ +|+.+.+..+- +...... +.. .+
T Consensus 68 C~~L~~I~lp~~-v~-~Ig~~aF~~c-~l~~i~~~~~-l~-~I~~~aF~~~-~L~~i~lp~~~-~~i~~~~---F~~-~~ 136 (379)
T 4h09_A 68 CYNMTKVTVAST-VT-SIGDGAFADT-KLQSYTGMER-VK-KFGDYVFQGT-DLDDFEFPGAT-TEIGNYI---FYN-SS 136 (379)
T ss_dssp CTTCCEEEECTT-CC-EECTTTTTTC-CCCEEEECTT-CC-EECTTTTTTC-CCSEEECCTTC-CEECTTT---TTT-CC
T ss_pred CCCCCEEEeCCc-ce-EechhhhcCC-CCceEECCce-ee-EeccceeccC-CcccccCCCcc-ccccccc---ccc-ce
Confidence 578999999755 76 8888899998 6888888754 55 5665677665 89999998653 2222222 222 36
Q ss_pred ccEEeccCCCCCCCCCchhhcCCCCccEEEecCCcccCCcCh-----------HHHhcCCCCcEEEecCCcccCCCCCCc
Q 042011 81 LNSLSLSSDYGDGFIFPKFLYHQHDLALVDLSHIKMNGEFPT-----------WLLENNTKLETLFLVNDSLTGPFRLPI 149 (361)
Q Consensus 81 L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-----------~~~~~~~~L~~L~l~~n~l~~~~~~~~ 149 (361)
++.+.+ - ..+.......|..+..++.+.+........... ..+.....+..+.+.... .......+
T Consensus 137 l~~~~~-~-~~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~f 213 (379)
T 4h09_A 137 VKRIVI-P-KSVTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEFTIPSTV-KTVTAYGF 213 (379)
T ss_dssp CCEEEE-C-TTCCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEEECCTTC-CEECTTTT
T ss_pred eeeeec-c-ceeeccccchhcccccccccccccccceeecccceecccccceeccccccccccccccccce-eEEeeccc
Confidence 666665 2 234445566788889999888876543211000 002233445555544322 22345567
Q ss_pred CCCCCcCEEEccCCcCCccCChhhhccCCCccEEEecCCccccccCccccCCCCCCEEeccCCcCccccchhhhhCCCCC
Q 042011 150 HSHRWLEFLDISNNNFRCHIPVEIGDILPSLKFFNISMNALDGSIPSSFGNMNFLRVLDLSNNQLTGEIPEHLAVGCVNL 229 (361)
Q Consensus 150 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L 229 (361)
.....++.+.+..+ +. .+....+..+..|+.+.+..+ ++..-...|.++.+|+.+.+..+ +. .++...|.++++|
T Consensus 214 ~~~~~l~~i~~~~~-~~-~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~-~i~~~aF~~c~~L 288 (379)
T 4h09_A 214 SYGKNLKKITITSG-VT-TLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VK-TVPYLLCSGCSNL 288 (379)
T ss_dssp TTCSSCSEEECCTT-CC-EECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CS-EECTTTTTTCTTC
T ss_pred ccccccceeeeccc-ee-EEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ce-ecccccccccccc
Confidence 77788999998765 44 566666666889999999776 55455678889999999999654 66 7788888899999
Q ss_pred cEEEeecCCCCCcccccccCCCCCCEEeccCCcCCccchhhhhcCCCCCEEECcCCcccccCCCCCCCcCcc
Q 042011 230 ESLALSNNSLEGHMFSRNFNLTNLEWLQLGGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGNVNVPSSPANTL 301 (361)
Q Consensus 230 ~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~L 301 (361)
+.+.+.++.++.+....|.+|.+|+.+.+..+ ++.....+|.++.+|+.+.+..+ ++..-..+|.++..+
T Consensus 289 ~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~~~ 358 (379)
T 4h09_A 289 TKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSSIT 358 (379)
T ss_dssp CEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSSCC
T ss_pred ccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCCCC
Confidence 99999999998888889999999999999765 66566789999999999999765 665566778776433
No 152
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.29 E-value=3.5e-12 Score=114.71 Aligned_cols=105 Identities=20% Similarity=0.153 Sum_probs=83.1
Q ss_pred CEEEccCC-cCCccCChhhhccCCCccEEEecC-CccccccCccccCCCCCCEEeccCCcCccccchhhhhCCCCCcEEE
Q 042011 156 EFLDISNN-NFRCHIPVEIGDILPSLKFFNISM-NALDGSIPSSFGNMNFLRVLDLSNNQLTGEIPEHLAVGCVNLESLA 233 (361)
Q Consensus 156 ~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ 233 (361)
..++.+++ +++ .+|. +.. +++|++|+|++ |.+++..+..|..+++|++|+|++|.++ .++...+..+++|+.|+
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~-~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~ 86 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPG-AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPRLSRLN 86 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCS-CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCC-EECTTGGGSCSCCCEEE
T ss_pred CEEEcCCCCCCC-ccCC-CCC-CCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccc-eeCHHHhcCCcCCCEEe
Confidence 35688887 887 7887 554 78899999986 8888666678888999999999999988 55555555888999999
Q ss_pred eecCCCCCcccccccCCCCCCEEeccCCcCCc
Q 042011 234 LSNNSLEGHMFSRNFNLTNLEWLQLGGNRFVG 265 (361)
Q Consensus 234 L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~ 265 (361)
|++|++++..+..+..++ |+.|++++|.+..
T Consensus 87 l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 87 LSFNALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp CCSSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CCCCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 999998886666666555 8899999888874
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.13 E-value=4.3e-10 Score=101.09 Aligned_cols=181 Identities=13% Similarity=0.125 Sum_probs=95.0
Q ss_pred hcCCCCccEEEecCCccc---------CCcChHHHhcCCCCcEEEecCCcccCCCCCCcCCCCCcCEEEccCCcCCccCC
Q 042011 100 LYHQHDLALVDLSHIKMN---------GEFPTWLLENNTKLETLFLVNDSLTGPFRLPIHSHRWLEFLDISNNNFRCHIP 170 (361)
Q Consensus 100 l~~l~~L~~L~l~~n~l~---------~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 170 (361)
...+++|+.|.+...... +.+. .++..+|+|+.|++.+|.-.. .+. + .+++|++|++..+.+.....
T Consensus 135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~-~ll~~~P~L~~L~L~g~~~l~-l~~-~-~~~~L~~L~L~~~~l~~~~l 210 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLS-PVLDAMPLLNNLKIKGTNNLS-IGK-K-PRPNLKSLEIISGGLPDSVV 210 (362)
T ss_dssp HHHHTTCSEEEECCCCTTTCCGGGCBCCBCH-HHHHTCTTCCEEEEECCBTCB-CCS-C-BCTTCSEEEEECSBCCHHHH
T ss_pred hhhcchhhheeecCcchhhcccccccccCHH-HHHhcCCCCcEEEEeCCCCce-ecc-c-cCCCCcEEEEecCCCChHHH
Confidence 344667777777543221 1122 346778888888888763111 222 3 36788888888877763333
Q ss_pred hhhh-ccCCCccEEEecCC--ccccc-----cCccc--cCCCCCCEEeccCCcCccccchhhhh--CCCCCcEEEeecCC
Q 042011 171 VEIG-DILPSLKFFNISMN--ALDGS-----IPSSF--GNMNFLRVLDLSNNQLTGEIPEHLAV--GCVNLESLALSNNS 238 (361)
Q Consensus 171 ~~~~-~~l~~L~~L~L~~n--~l~~~-----~~~~l--~~~~~L~~L~l~~n~l~~~~~~~~~~--~~~~L~~L~L~~n~ 238 (361)
..+. ..+|+|++|+|+.+ ...+. +...+ ..+++|++|++.+|.+.+..+..++. .+++|++|+|+.|.
T Consensus 211 ~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~ 290 (362)
T 2ra8_A 211 EDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV 290 (362)
T ss_dssp HHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSC
T ss_pred HHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCC
Confidence 3333 23788888887532 11111 11112 23567777777766665433333331 34556666666666
Q ss_pred CCCcc----cccccCCCCCCEEeccCCcCCccchhhhhc-CCCCCEEECcCCc
Q 042011 239 LEGHM----FSRNFNLTNLEWLQLGGNRFVGEIPQSLSK-CSSLEGLYLNNNS 286 (361)
Q Consensus 239 l~~~~----~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~l~~N~ 286 (361)
+++.. +..+..+++|+.|++++|.+++.....+.. + ...++++.++
T Consensus 291 L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 291 LTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp CBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred CChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 55422 122233456666666666655444343432 2 2445555554
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.98 E-value=8.5e-10 Score=99.17 Aligned_cols=160 Identities=19% Similarity=0.150 Sum_probs=70.7
Q ss_pred hcCCCCcEEEecCCcccC---------CCCCCcCCCCCcCEEEccCCcCCccCChhhhccCCCccEEEecCCccccccCc
Q 042011 126 ENNTKLETLFLVNDSLTG---------PFRLPIHSHRWLEFLDISNNNFRCHIPVEIGDILPSLKFFNISMNALDGSIPS 196 (361)
Q Consensus 126 ~~~~~L~~L~l~~n~l~~---------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 196 (361)
..+++|+.|.+....... .+...+..+|+|+.|.++++.-. .++. + . .++|++|++..+.++.....
T Consensus 136 ~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~-~~~L~~L~L~~~~l~~~~l~ 211 (362)
T 2ra8_A 136 EKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-P-RPNLKSLEIISGGLPDSVVE 211 (362)
T ss_dssp HHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-B-CTTCSEEEEECSBCCHHHHH
T ss_pred hhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-c-CCCCcEEEEecCCCChHHHH
Confidence 456778888775542210 11122234455666666555211 2222 1 2 45666666665555422222
Q ss_pred ccc--CCCCCCEEeccC--CcCccc-----cchhhh-hCCCCCcEEEeecCCCCCcccccc---cCCCCCCEEeccCCcC
Q 042011 197 SFG--NMNFLRVLDLSN--NQLTGE-----IPEHLA-VGCVNLESLALSNNSLEGHMFSRN---FNLTNLEWLQLGGNRF 263 (361)
Q Consensus 197 ~l~--~~~~L~~L~l~~--n~l~~~-----~~~~~~-~~~~~L~~L~L~~n~l~~~~~~~~---~~~~~L~~L~L~~n~l 263 (361)
.+. .+|+|+.|+++. +...+. +...+. ..+++|++|++.+|.+....+..+ ..+++|+.|+|+.|.+
T Consensus 212 ~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L 291 (362)
T 2ra8_A 212 DILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVL 291 (362)
T ss_dssp HHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCC
T ss_pred HHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCC
Confidence 222 455666665532 111101 001110 124556666665555543211111 1345566666666555
Q ss_pred Cccch----hhhhcCCCCCEEECcCCcccc
Q 042011 264 VGEIP----QSLSKCSSLEGLYLNNNSLSG 289 (361)
Q Consensus 264 ~~~~~----~~~~~l~~L~~L~l~~N~l~~ 289 (361)
.+..+ ..+..+++|+.|++++|.+++
T Consensus 292 ~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 292 TDEGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp BHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred ChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 54322 222334556666666555543
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.74 E-value=7.7e-09 Score=83.98 Aligned_cols=111 Identities=14% Similarity=0.173 Sum_probs=54.9
Q ss_pred CCCccEEEecCC-cccc----ccCccccCCCCCCEEeccCCcCccccc----hhhhhCCCCCcEEEeecCCCCCc----c
Q 042011 177 LPSLKFFNISMN-ALDG----SIPSSFGNMNFLRVLDLSNNQLTGEIP----EHLAVGCVNLESLALSNNSLEGH----M 243 (361)
Q Consensus 177 l~~L~~L~L~~n-~l~~----~~~~~l~~~~~L~~L~l~~n~l~~~~~----~~~~~~~~~L~~L~L~~n~l~~~----~ 243 (361)
.+.|++|+|++| .+.. .+...+...++|++|++++|.+.+... ..+. ..++|++|+|++|.+... .
T Consensus 35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~-~n~~L~~L~L~~N~i~~~g~~~l 113 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLK-VNNTLKSLNVESNFISGSGILAL 113 (185)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHH-HCSSCCEEECCSSCCCHHHHHHH
T ss_pred CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHH-hCCCcCEEECcCCcCCHHHHHHH
Confidence 455556666555 5542 123334455566666666666652211 1111 334566666666655532 2
Q ss_pred cccccCCCCCCEEec--cCCcCCccc----hhhhhcCCCCCEEECcCCccc
Q 042011 244 FSRNFNLTNLEWLQL--GGNRFVGEI----PQSLSKCSSLEGLYLNNNSLS 288 (361)
Q Consensus 244 ~~~~~~~~~L~~L~L--~~n~l~~~~----~~~~~~l~~L~~L~l~~N~l~ 288 (361)
...+...+.|++|++ ++|.+.... .+.+...++|++|++++|.+.
T Consensus 114 ~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 114 VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 333444555666666 555555432 233344455556665555553
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.60 E-value=9.6e-09 Score=83.40 Aligned_cols=120 Identities=16% Similarity=0.134 Sum_probs=91.7
Q ss_pred ccCccccCCCCCCEEeccCC-cCcccc----chhhhhCCCCCcEEEeecCCCCCc----ccccccCCCCCCEEeccCCcC
Q 042011 193 SIPSSFGNMNFLRVLDLSNN-QLTGEI----PEHLAVGCVNLESLALSNNSLEGH----MFSRNFNLTNLEWLQLGGNRF 263 (361)
Q Consensus 193 ~~~~~l~~~~~L~~L~l~~n-~l~~~~----~~~~~~~~~~L~~L~L~~n~l~~~----~~~~~~~~~~L~~L~L~~n~l 263 (361)
.+...+...+.|++|++++| .+.... ...+ ...++|++|+|++|.+... +...+...+.|++|+|++|.|
T Consensus 27 ~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L-~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i 105 (185)
T 1io0_A 27 TLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEAL-KTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFI 105 (185)
T ss_dssp HHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHH-TTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCC
T ss_pred HHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHH-HhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcC
Confidence 34456778899999999999 887432 2222 2578899999999999753 334455678999999999999
Q ss_pred Ccc----chhhhhcCCCCCEEEC--cCCcccccC----CCCCCCcCcceeeccccccccC
Q 042011 264 VGE----IPQSLSKCSSLEGLYL--NNNSLSGNV----NVPSSPANTLFNLSQNSRRFTS 313 (361)
Q Consensus 264 ~~~----~~~~~~~l~~L~~L~l--~~N~l~~~~----~~~~~~~~~L~~l~l~~N~~~~ 313 (361)
.+. +.+.+...++|++|++ ++|.|.+.. ...+...++|++|++++|.+..
T Consensus 106 ~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~ 165 (185)
T 1io0_A 106 SGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGP 165 (185)
T ss_dssp CHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred CHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCCh
Confidence 865 3566777889999999 889998642 2344566899999999998763
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.43 E-value=4.4e-08 Score=83.66 Aligned_cols=39 Identities=41% Similarity=0.349 Sum_probs=16.8
Q ss_pred CCCCcEEEeecCCCCCc--ccccccCCCCCCEEeccCCcCC
Q 042011 226 CVNLESLALSNNSLEGH--MFSRNFNLTNLEWLQLGGNRFV 264 (361)
Q Consensus 226 ~~~L~~L~L~~n~l~~~--~~~~~~~~~~L~~L~L~~n~l~ 264 (361)
+++|+.|+|++|++++. .+..+..+++|+.|+|++|+++
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~ 209 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK 209 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCC
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccC
Confidence 44444444444444431 1223334444444444444444
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.38 E-value=4e-07 Score=77.76 Aligned_cols=99 Identities=23% Similarity=0.189 Sum_probs=67.3
Q ss_pred EeCCCccccCcCCh---hhhhccCCCCeEeCcCCcccc--cCCcccccCCCCCcEEEccCCCcccccccccccccCcccc
Q 042011 7 LDVSSNQLTGSISS---SPLVHLTSIEELMLSNNHFQI--PISLEPLFNHSRLKIFYADNNELNAEITQSHSLIAPNFQL 81 (361)
Q Consensus 7 L~L~~n~i~~~i~~---~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L 81 (361)
++++.|... .++. ....++++|++|+|++|++++ .++ ..+..+++|+.|+|++|.+.+. ..+..+..+ +|
T Consensus 148 l~l~~N~~~-~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~-~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l-~L 222 (267)
T 3rw6_A 148 IDVVLNRRS-CMAATLRIIEENIPELLSLNLSNNRLYRLDDMS-SIVQKAPNLKILNLSGNELKSE--RELDKIKGL-KL 222 (267)
T ss_dssp CCCCTTSHH-HHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGT-THHHHSTTCCEEECTTSCCCSG--GGGGGGTTS-CC
T ss_pred ccccCCHHH-HHHHHHHHHHhhCCCCCEEECCCCCCCCCccch-hHHhhCCCCCEEECCCCccCCc--hhhhhcccC-Cc
Confidence 566667443 3332 123568899999999999884 333 3556889999999999998764 222223333 89
Q ss_pred cEEeccCCCCCCCCCc-------hhhcCCCCccEEEe
Q 042011 82 NSLSLSSDYGDGFIFP-------KFLYHQHDLALVDL 111 (361)
Q Consensus 82 ~~L~l~~~~~~~~~~~-------~~l~~l~~L~~L~l 111 (361)
++|++ .+|.+.+..| ..+..+++|+.||=
T Consensus 223 ~~L~L-~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 223 EELWL-DGNSLCDTFRDQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp SEEEC-TTSTTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred ceEEc-cCCcCccccCcchhHHHHHHHHCcccCeECC
Confidence 99999 8888875443 34677899998864
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.32 E-value=5.1e-07 Score=71.64 Aligned_cols=84 Identities=8% Similarity=0.119 Sum_probs=55.0
Q ss_pred CCccEEEecCCccccccCccccCCCCCCEEeccCCc-CccccchhhhhCC----CCCcEEEeecCC-CCCcccccccCCC
Q 042011 178 PSLKFFNISMNALDGSIPSSFGNMNFLRVLDLSNNQ-LTGEIPEHLAVGC----VNLESLALSNNS-LEGHMFSRNFNLT 251 (361)
Q Consensus 178 ~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~-l~~~~~~~~~~~~----~~L~~L~L~~n~-l~~~~~~~~~~~~ 251 (361)
..|++||+++|.++..--..+..+++|++|++++|. +++..-..+. .+ ++|++|++++|. ++......+..++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~-~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLS-QLENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHH-TCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHH-hcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 368888888887775545556777888888888874 5533333333 22 357777777764 6655555566677
Q ss_pred CCCEEeccCCc
Q 042011 252 NLEWLQLGGNR 262 (361)
Q Consensus 252 ~L~~L~L~~n~ 262 (361)
+|+.|++++|.
T Consensus 140 ~L~~L~L~~c~ 150 (176)
T 3e4g_A 140 NLKYLFLSDLP 150 (176)
T ss_dssp TCCEEEEESCT
T ss_pred CCCEEECCCCC
Confidence 77777777764
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.24 E-value=7.2e-07 Score=70.78 Aligned_cols=84 Identities=14% Similarity=0.176 Sum_probs=52.3
Q ss_pred CCCCEEeccCCcCccccchhhhhCCCCCcEEEeecCC-CCCcccccccCC----CCCCEEeccCCc-CCccchhhhhcCC
Q 042011 202 NFLRVLDLSNNQLTGEIPEHLAVGCVNLESLALSNNS-LEGHMFSRNFNL----TNLEWLQLGGNR-FVGEIPQSLSKCS 275 (361)
Q Consensus 202 ~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~----~~L~~L~L~~n~-l~~~~~~~~~~l~ 275 (361)
..|++|+++++.+++.--..+. .+++|++|+|++|. +++.....+..+ ++|++|++++|. +++.....+..++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~-~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHME-GLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGT-TCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred ceEeEEeCcCCCccHHHHHHhc-CCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 4577777777776644334443 67777777777764 555444444443 357777777763 6665555666677
Q ss_pred CCCEEECcCCc
Q 042011 276 SLEGLYLNNNS 286 (361)
Q Consensus 276 ~L~~L~l~~N~ 286 (361)
+|++|+++++.
T Consensus 140 ~L~~L~L~~c~ 150 (176)
T 3e4g_A 140 NLKYLFLSDLP 150 (176)
T ss_dssp TCCEEEEESCT
T ss_pred CCCEEECCCCC
Confidence 77777777764
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.95 E-value=6.8e-06 Score=62.15 Aligned_cols=69 Identities=12% Similarity=0.084 Sum_probs=49.4
Q ss_pred CEEeccCCcCC-ccchhhhhcCCCCCEEECcCCcccccCCCCCCCcCcceeeccccccccCCcccccccccc
Q 042011 254 EWLQLGGNRFV-GEIPQSLSKCSSLEGLYLNNNSLSGNVNVPSSPANTLFNLSQNSRRFTSSISHSHLLNLH 324 (361)
Q Consensus 254 ~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~~~~~~~~~~ 324 (361)
..++.+++.++ ..+|..+ .++|+.|+|++|+|+...+..|..+++|+.|+|.+|+|.+++...+|..|.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~l~~l~~wl 80 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRLVPLRAWL 80 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGGGHHHHHHH
T ss_pred CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCccHHHHHHH
Confidence 36677777765 2344333 246888888888888776777788888888888888888888776666653
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.74 E-value=3.9e-05 Score=62.01 Aligned_cols=18 Identities=17% Similarity=0.303 Sum_probs=8.6
Q ss_pred ccCCCCCCEEeccCCcCc
Q 042011 198 FGNMNFLRVLDLSNNQLT 215 (361)
Q Consensus 198 l~~~~~L~~L~l~~n~l~ 215 (361)
+..-..|++|++++|.+.
T Consensus 66 L~~N~~L~~L~L~~n~ig 83 (197)
T 1pgv_A 66 ACNSKHIEKFSLANTAIS 83 (197)
T ss_dssp HTTCSCCCEEECTTSCCB
T ss_pred HhhCCCcCEEEccCCCCC
Confidence 333444555555555544
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.53 E-value=3.1e-05 Score=62.54 Aligned_cols=116 Identities=11% Similarity=0.083 Sum_probs=73.6
Q ss_pred hccCCCCeEeCcCC-cccc----cCCcccccCCCCCcEEEccCCCcccccccccccc-cCcccccEEeccCCCCCCCCCc
Q 042011 24 VHLTSIEELMLSNN-HFQI----PISLEPLFNHSRLKIFYADNNELNAEITQSHSLI-APNFQLNSLSLSSDYGDGFIFP 97 (361)
Q Consensus 24 ~~l~~L~~L~Ls~n-~l~~----~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~ 97 (361)
..-+.|++|+|++| +|.. .+. +++.....|+.|+|++|.+.+.....+... .....|++|+| +.|.++....
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la-~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L-~~N~Ig~~Ga 115 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLI-EAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNV-ESNFLTPELL 115 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHH-HHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEEC-CSSBCCHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHH-HHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEec-CCCcCCHHHH
Confidence 34567888888875 6641 122 356667788888888888876544433222 23447888888 8888775432
Q ss_pred ----hhhcCCCCccEEEecCCc---ccCC----cChHHHhcCCCCcEEEecCCccc
Q 042011 98 ----KFLYHQHDLALVDLSHIK---MNGE----FPTWLLENNTKLETLFLVNDSLT 142 (361)
Q Consensus 98 ----~~l~~l~~L~~L~l~~n~---l~~~----~~~~~~~~~~~L~~L~l~~n~l~ 142 (361)
..+..-+.|++|+++++. +... +... +...+.|+.|+++.+.+.
T Consensus 116 ~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~a-L~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 116 ARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMA-IEENESLLRVGISFASME 170 (197)
T ss_dssp HHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHH-HHHCSSCCEEECCCCCHH
T ss_pred HHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHH-HHhCCCcCeEeccCCCcc
Confidence 345556778999997653 3321 2223 566788999998877543
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.88 E-value=0.0023 Score=48.06 Aligned_cols=55 Identities=18% Similarity=0.146 Sum_probs=30.9
Q ss_pred EEEeecCCCC--CcccccccCCCCCCEEeccCCcCCccchhhhhcCCCCCEEECcCCccc
Q 042011 231 SLALSNNSLE--GHMFSRNFNLTNLEWLQLGGNRFVGEIPQSLSKCSSLEGLYLNNNSLS 288 (361)
Q Consensus 231 ~L~L~~n~l~--~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~ 288 (361)
.++.+++.++ . +|..+ .++|+.|+|++|+|+...+..|..+++|+.|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~-vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWAS-LPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTT-SCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCcccc-CCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 4555555554 3 33222 235666666666666555555666666666666666553
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=89.06 E-value=0.4 Score=33.72 Aligned_cols=49 Identities=12% Similarity=0.109 Sum_probs=39.7
Q ss_pred CccccCcCChhhhhccCCCCeEeCcCCcccccCCcccccCCCCCcEEEccCC
Q 042011 11 SNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFYADNN 62 (361)
Q Consensus 11 ~n~i~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n 62 (361)
+..++ .|...+|.+|.+|+.+.+..+ ++ .|...+|.+|.+|+.+.+.+.
T Consensus 5 g~~vt-~I~~~aF~~c~~L~~i~iP~~-v~-~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 5 GEPVV-GMDKSLFAGNTVIREITVQPN-IG-LLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCC-SSCSCTTTTCTTCCCEEECTT-SS-CCCTTSSTTCTTCCCEEECCS
T ss_pred CCccC-EecHHHhcCCCCCcEEEcCCc-hh-eEcHHHHhccCCccEEEEcCC
Confidence 45566 777779999999999999875 44 566678999999999998865
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=72.12 E-value=9.5 Score=26.49 Aligned_cols=45 Identities=22% Similarity=0.110 Sum_probs=24.4
Q ss_pred CCCcccccccCCCCCCEEeccCCcCCccchhhhhcCCCCCEEECcC
Q 042011 239 LEGHMFSRNFNLTNLEWLQLGGNRFVGEIPQSLSKCSSLEGLYLNN 284 (361)
Q Consensus 239 l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 284 (361)
++.+....|.+|.+|+.+.+-.+ ++.....+|.+|.+|+.+.+.+
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 44444555556666666665543 3334445566666666666554
Done!