Your job contains 1 sequence.
>042013
MANLPQSLSMNVPFGGGPSASSPSAPAGAGANKDRKMASAEHLVLDLSNPDLRENALLEL
SKNKELFQDLAPFVWNSFGTIAALIQEIVSIYPVLSPPNLTPAQSNRVCNALALLQCVAS
HPDTRMLFLNAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKVDDTEVISFLLSTE
IIPLCLRTMEMGSELSKTVATFIVQKILLDDVGLDYICTTAERFFAVGRVLGNMVAALAE
QPSSRLLKHIIRCYLRLSDNPRACDALRSCLPDMLRDATFSSCLREDPTTRRWLQQLLHN
VGVNRVPTLQAGTAFDHMLVS
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 042013
(321 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2091936 - symbol:AT3G20800 "AT3G20800" species... 1342 4.6e-137 1
TAIR|locus:2182315 - symbol:AT5G12980 "AT5G12980" species... 1193 2.8e-121 1
UNIPROTKB|Q6IP65 - symbol:rqcd1 "Cell differentiation pro... 975 3.5e-98 1
UNIPROTKB|Q6P819 - symbol:rqcd1 "Cell differentiation pro... 975 3.5e-98 1
UNIPROTKB|F2Z4M8 - symbol:RQCD1 "Uncharacterized protein"... 971 9.4e-98 1
UNIPROTKB|A7MB47 - symbol:RQCD1 "Cell differentiation pro... 971 9.4e-98 1
UNIPROTKB|Q92600 - symbol:RQCD1 "Cell differentiation pro... 971 9.4e-98 1
UNIPROTKB|F2Z5T0 - symbol:RQCD1 "Uncharacterized protein"... 971 9.4e-98 1
UNIPROTKB|Q4R347 - symbol:RQCD1 "Cell differentiation pro... 971 9.4e-98 1
UNIPROTKB|Q5R6Z6 - symbol:RQCD1 "Cell differentiation pro... 971 9.4e-98 1
MGI|MGI:1928902 - symbol:Rqcd1 "rcd1 (required for cell d... 971 9.4e-98 1
RGD|1311495 - symbol:Rqcd1 "Rcd1 required for cell differ... 971 9.4e-98 1
GENEDB_PFALCIPARUM|PFE0375w - symbol:PFE0375w "cell diffe... 969 1.5e-97 1
UNIPROTKB|Q8I427 - symbol:PFE0375w "Cell differentiation ... 969 1.5e-97 1
ZFIN|ZDB-GENE-030131-1558 - symbol:rqcd1 "RCD1 required f... 946 4.2e-95 1
UNIPROTKB|G4NB38 - symbol:MGG_00632 "Cell differentiation... 942 1.1e-94 1
FB|FBgn0031047 - symbol:Rcd-1 "Required for cell differen... 931 1.6e-93 1
ASPGD|ASPL0000012996 - symbol:AN3669 species:162425 "Emer... 930 2.1e-93 1
DICTYBASE|DDB_G0269778 - symbol:DDB_G0269778 "cell differ... 907 5.7e-91 1
POMBASE|SPAC29B12.06c - symbol:rcd1 "RNA-binding protein,... 891 2.8e-89 1
WB|WBGene00016139 - symbol:ntl-9 species:6239 "Caenorhabd... 771 4.4e-88 2
CGD|CAL0003168 - symbol:orf19.7198 species:5476 "Candida ... 644 1.5e-79 2
UNIPROTKB|Q5A097 - symbol:CAF40 "Potential CCR4-NOT compl... 644 1.5e-79 2
SGD|S000005232 - symbol:CAF40 "Component of the CCR4-NOT ... 785 4.8e-78 1
FB|FBgn0032089 - symbol:Rcd-1r "Rcd-1 related" species:72... 759 2.7e-75 1
DICTYBASE|DDB_G0275289 - symbol:DDB_G0275289 "cell differ... 546 6.1e-52 1
TAIR|locus:2060221 - symbol:AT2G32550 species:3702 "Arabi... 370 4.6e-34 1
>TAIR|locus:2091936 [details] [associations]
symbol:AT3G20800 "AT3G20800" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0007275 "multicellular organismal
development" evidence=ISS] Pfam:PF04078 EMBL:CP002686 KO:K12606
OMA:CLPDQLR InterPro:IPR007216 PANTHER:PTHR12262
ProtClustDB:CLSN2685062 UniGene:At.48685 UniGene:At.66456
EMBL:AY091082 EMBL:AY122953 IPI:IPI00525457 RefSeq:NP_188716.1
ProteinModelPortal:Q8RWV5 SMR:Q8RWV5 PRIDE:Q8RWV5 DNASU:821628
EnsemblPlants:AT3G20800.1 GeneID:821628 KEGG:ath:AT3G20800
TAIR:At3g20800 InParanoid:Q8RWV5 PhylomeDB:Q8RWV5
ArrayExpress:Q8RWV5 Genevestigator:Q8RWV5 Uniprot:Q8RWV5
Length = 316
Score = 1342 (477.5 bits), Expect = 4.6e-137, P = 4.6e-137
Identities = 266/319 (83%), Positives = 279/319 (87%)
Query: 1 MANLPQSLSMNVPFXXXXXXXXXXXXXXXXXNKDRKMASAEHLVLDLSNPDLRENALLEL 60
MANLP SLSM PF NKDR +ASAE LVLDLSNP+LRENALLEL
Sbjct: 1 MANLPSSLSMGTPFGGPSTSAQNPTGAPA--NKDRNLASAEQLVLDLSNPELRENALLEL 58
Query: 61 SKNKELFQDLAPFVWNSFGTIAALIQEIVSIYPVLSPPNLTPAQSNRVCNALALLQCVAS 120
SK +ELFQDLAP +WNSFGTIAAL+QEIVSIY VL+PPNLTPAQSNRVCN+LALLQCVAS
Sbjct: 59 SKKRELFQDLAPLLWNSFGTIAALLQEIVSIYSVLAPPNLTPAQSNRVCNSLALLQCVAS 118
Query: 121 HPDTRMLFLNAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKVDDTEVISFLLSTE 180
H DTRMLFL AHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKVDDTEVISFLLSTE
Sbjct: 119 HSDTRMLFLKAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKVDDTEVISFLLSTE 178
Query: 181 IIPLCLRTMEMGSELSKTVATFIVQKILLDDVGLDYICTTAERFFAVGRVLGNMVAALAE 240
IIPLCLRTMEMGSELSKTVATFIVQKILLDDVG+DYICTTAERFFAVGRVLGNMV +L E
Sbjct: 179 IIPLCLRTMEMGSELSKTVATFIVQKILLDDVGMDYICTTAERFFAVGRVLGNMVQSLVE 238
Query: 241 QPSSRLLKHIIRCYLRLSDNPRACDALRSCLPDMLRDATFSSCLREDPTTRRWLQQLLHN 300
QPS RLLKHIIRCYLRLSDNPRAC AL SCLPD LRD +FS+CLREDPT RRWLQQL+HN
Sbjct: 239 QPSPRLLKHIIRCYLRLSDNPRACAALASCLPDSLRDGSFSNCLREDPTARRWLQQLVHN 298
Query: 301 VGVNRVPTLQAGTAFDHML 319
VGV RVPT Q G F+HML
Sbjct: 299 VGVGRVPTHQGG-GFEHML 316
>TAIR|locus:2182315 [details] [associations]
symbol:AT5G12980 "AT5G12980" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0007275 "multicellular organismal
development" evidence=ISS] InterPro:IPR016024 Pfam:PF04078
EMBL:CP002688 SUPFAM:SSF48371 EMBL:AL353013 HOGENOM:HOG000192069
KO:K12606 InterPro:IPR007216 PANTHER:PTHR12262
ProtClustDB:CLSN2685062 EMBL:AY161167 IPI:IPI00546387 PIR:T49912
RefSeq:NP_196802.1 UniGene:At.19618 UniGene:At.49791
ProteinModelPortal:Q9LXU1 SMR:Q9LXU1 PRIDE:Q9LXU1
EnsemblPlants:AT5G12980.1 GeneID:831138 KEGG:ath:AT5G12980
TAIR:At5g12980 InParanoid:Q9LXU1 OMA:RTMENGS PhylomeDB:Q9LXU1
Genevestigator:Q9LXU1 Uniprot:Q9LXU1
Length = 311
Score = 1193 (425.0 bits), Expect = 2.8e-121, P = 2.8e-121
Identities = 237/322 (73%), Positives = 264/322 (81%)
Query: 1 MANLPQSLSMNVPFXXXXXXXXXXXXXXXXXNKDRKMASAEHLVLDLSNPDLRENALLEL 60
MANLP LSM N DRK++SAE L+LDLSNP+LRENAL EL
Sbjct: 1 MANLPPPLSMK------SVALSGASSPSSSSNNDRKLSSAEQLILDLSNPELRENALHEL 54
Query: 61 SKNKELFQDLAPFVWNSFGTIAALIQEIVSIYPVLSPPNLTPAQSNRVCNALALLQCVAS 120
SK +E+FQDLAP +W+S GTI AL+QEI+++YP LSPP +TPAQSNRVCNALALLQCVAS
Sbjct: 55 SKKREIFQDLAPLLWHSVGTIPALLQEIIAVYPALSPPTMTPAQSNRVCNALALLQCVAS 114
Query: 121 HPDTRMLFLNAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKVDDTEVISFLLSTE 180
H DTRMLFL AH+PLYLY FLNT+SKSRPFEYLRLTSLGVIGALVKVDDTEVI FLL TE
Sbjct: 115 HTDTRMLFLKAHLPLYLYAFLNTSSKSRPFEYLRLTSLGVIGALVKVDDTEVIRFLLQTE 174
Query: 181 IIPLCLRTMEMGSELSKTVATFIVQKILLDDVGLDYICTTAERFFAVGRVLGNMVAALAE 240
I+PLCLRTME GSELSKTVATFIVQK+LLDDVGL+Y+CTTAERFFA+GRVLGNMV +LAE
Sbjct: 175 IVPLCLRTMENGSELSKTVATFIVQKVLLDDVGLEYMCTTAERFFALGRVLGNMVTSLAE 234
Query: 241 QPSSRLLKHIIRCYLRLSDNPRACDALRSCLPDMLRDATFSSCLREDPTTRRWLQQLLHN 300
PS+RLLKHIIRCYLRL+DNPRACDAL SCLPD+LRDATFS CL +DP +WLQQLLHN
Sbjct: 235 GPSARLLKHIIRCYLRLTDNPRACDALGSCLPDLLRDATFSGCLYDDPPAMQWLQQLLHN 294
Query: 301 VGVN-RVPTLQAGTAFDHMLVS 321
V V R P G A HM V+
Sbjct: 295 VNVGGRAPQ---GLA--HMFVN 311
>UNIPROTKB|Q6IP65 [details] [associations]
symbol:rqcd1 "Cell differentiation protein RCD1 homolog"
species:8355 "Xenopus laevis" [GO:2000327 "positive regulation of
ligand-dependent nuclear receptor transcription coactivator
activity" evidence=ISS] InterPro:IPR016024 Pfam:PF04078
GO:GO:0005634 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0006355 GO:GO:0006351 GO:GO:0000932 KO:K12606
InterPro:IPR007216 PANTHER:PTHR12262 GO:GO:2000327 CTD:9125
HOVERGEN:HBG056785 EMBL:BC072053 RefSeq:NP_001085150.1
UniGene:Xl.46465 ProteinModelPortal:Q6IP65 SMR:Q6IP65 GeneID:432229
KEGG:xla:432229 Xenbase:XB-GENE-1001088 Uniprot:Q6IP65
Length = 299
Score = 975 (348.3 bits), Expect = 3.5e-98, P = 3.5e-98
Identities = 187/261 (71%), Positives = 220/261 (84%)
Query: 46 DLSNPDLRENALLELSKNKELFQDLAPFVWNSFGTIAALIQEIVSIYPVLSPPNLTPAQS 105
+LS+PD RENALLELSK +E DLAP +W+SFGTIAAL+QEIV+IYP ++PP LT QS
Sbjct: 28 ELSSPDTRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQS 87
Query: 106 NRVCNALALLQCVASHPDTRMLFLNAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALV 165
NRVCNALALLQCVASHP+TR FL AHIPL+LYPFL+T SK+RPFEYLRLTSLGVIGALV
Sbjct: 88 NRVCNALALLQCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALV 147
Query: 166 KVDDTEVISFLLSTEIIPLCLRTMEMGSELSKTVATFIVQKILLDDVGLDYICTTAERFF 225
K D+ EVI+FLL+TEIIPLCLR ME GSELSKTVATFI+QKILLDD GL YIC T ERF
Sbjct: 148 KTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKILLDDTGLAYICQTYERFS 207
Query: 226 AVGRVLGNMVAALAEQPSSRLLKHIIRCYLRLSDNPRACDALRSCLPDMLRDATFSSCLR 285
V +LG MV L+++PS+RLLKH++RCYLRLSDNPRA +ALR CLPD L+D TF+ L+
Sbjct: 208 HVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQCLPDQLKDTTFAQVLK 267
Query: 286 EDPTTRRWLQQLLHNVGVNRV 306
+D TT+RWL QL+ N+ +V
Sbjct: 268 DDTTTKRWLAQLVKNLQEGQV 288
>UNIPROTKB|Q6P819 [details] [associations]
symbol:rqcd1 "Cell differentiation protein RCD1 homolog"
species:8364 "Xenopus (Silurana) tropicalis" [GO:2000327 "positive
regulation of ligand-dependent nuclear receptor transcription
coactivator activity" evidence=ISS] InterPro:IPR016024 Pfam:PF04078
GO:GO:0005634 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0006355 GO:GO:0006351 GO:GO:0000932 eggNOG:COG5209
GeneTree:ENSGT00390000001225 HOGENOM:HOG000192069 KO:K12606
InterPro:IPR007216 PANTHER:PTHR12262 GO:GO:2000327 CTD:9125
HOVERGEN:HBG056785 OrthoDB:EOG4W9J4C EMBL:CR760361 EMBL:BC061412
RefSeq:NP_989024.1 UniGene:Str.7709 ProteinModelPortal:Q6P819
SMR:Q6P819 STRING:Q6P819 Ensembl:ENSXETT00000032762 GeneID:394620
KEGG:xtr:394620 Xenbase:XB-GENE-1001082 InParanoid:Q6P819
OMA:QLYANIC Bgee:Q6P819 Uniprot:Q6P819
Length = 299
Score = 975 (348.3 bits), Expect = 3.5e-98, P = 3.5e-98
Identities = 187/261 (71%), Positives = 220/261 (84%)
Query: 46 DLSNPDLRENALLELSKNKELFQDLAPFVWNSFGTIAALIQEIVSIYPVLSPPNLTPAQS 105
+LS+PD RENALLELSK +E DLAP +W+SFGTIAAL+QEIV+IYP ++PP LT QS
Sbjct: 28 ELSSPDTRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQS 87
Query: 106 NRVCNALALLQCVASHPDTRMLFLNAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALV 165
NRVCNALALLQCVASHP+TR FL AHIPL+LYPFL+T SK+RPFEYLRLTSLGVIGALV
Sbjct: 88 NRVCNALALLQCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALV 147
Query: 166 KVDDTEVISFLLSTEIIPLCLRTMEMGSELSKTVATFIVQKILLDDVGLDYICTTAERFF 225
K D+ EVI+FLL+TEIIPLCLR ME GSELSKTVATFI+QKILLDD GL YIC T ERF
Sbjct: 148 KTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKILLDDTGLAYICQTYERFS 207
Query: 226 AVGRVLGNMVAALAEQPSSRLLKHIIRCYLRLSDNPRACDALRSCLPDMLRDATFSSCLR 285
V +LG MV L+++PS+RLLKH++RCYLRLSDNPRA +ALR CLPD L+D TF+ L+
Sbjct: 208 HVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQCLPDQLKDTTFAQVLK 267
Query: 286 EDPTTRRWLQQLLHNVGVNRV 306
+D TT+RWL QL+ N+ +V
Sbjct: 268 DDTTTKRWLAQLVKNLQEGQV 288
>UNIPROTKB|F2Z4M8 [details] [associations]
symbol:RQCD1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA] [GO:0019221 "cytokine-mediated signaling pathway"
evidence=IEA] [GO:2000327 "positive regulation of ligand-dependent
nuclear receptor transcription coactivator activity" evidence=IEA]
InterPro:IPR016024 Pfam:PF04078 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0019221 GO:GO:0000932
GeneTree:ENSGT00390000001225 OMA:CLPDQLR InterPro:IPR007216
PANTHER:PTHR12262 EMBL:AADN02016787 IPI:IPI00575088
ProteinModelPortal:F2Z4M8 SMR:F2Z4M8 PRIDE:F2Z4M8
Ensembl:ENSGALT00000018598 ArrayExpress:F2Z4M8 Uniprot:F2Z4M8
Length = 299
Score = 971 (346.9 bits), Expect = 9.4e-98, P = 9.4e-98
Identities = 186/261 (71%), Positives = 220/261 (84%)
Query: 46 DLSNPDLRENALLELSKNKELFQDLAPFVWNSFGTIAALIQEIVSIYPVLSPPNLTPAQS 105
+LS+P+ RENALLELSK +E DLAP +W+SFGTIAAL+QEIV+IYP ++PP LT QS
Sbjct: 28 ELSSPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQS 87
Query: 106 NRVCNALALLQCVASHPDTRMLFLNAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALV 165
NRVCNALALLQCVASHP+TR FL AHIPL+LYPFL+T SK+RPFEYLRLTSLGVIGALV
Sbjct: 88 NRVCNALALLQCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALV 147
Query: 166 KVDDTEVISFLLSTEIIPLCLRTMEMGSELSKTVATFIVQKILLDDVGLDYICTTAERFF 225
K D+ EVI+FLL+TEIIPLCLR ME GSELSKTVATFI+QKILLDD GL YIC T ERF
Sbjct: 148 KTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKILLDDTGLAYICQTYERFS 207
Query: 226 AVGRVLGNMVAALAEQPSSRLLKHIIRCYLRLSDNPRACDALRSCLPDMLRDATFSSCLR 285
V +LG MV L+++PS+RLLKH++RCYLRLSDNPRA +ALR CLPD L+D TF+ L+
Sbjct: 208 HVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQCLPDQLKDTTFAQVLK 267
Query: 286 EDPTTRRWLQQLLHNVGVNRV 306
+D TT+RWL QL+ N+ +V
Sbjct: 268 DDTTTKRWLAQLVKNLQEGQV 288
>UNIPROTKB|A7MB47 [details] [associations]
symbol:RQCD1 "Cell differentiation protein RCD1 homolog"
species:9913 "Bos taurus" [GO:2000327 "positive regulation of
ligand-dependent nuclear receptor transcription coactivator
activity" evidence=ISS] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=ISS] [GO:0005634 "nucleus" evidence=IEA] [GO:0019221
"cytokine-mediated signaling pathway" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
InterPro:IPR016024 Pfam:PF04078 GO:GO:0005634 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0006355 GO:GO:0019221
GO:GO:0006351 GO:GO:0000932 eggNOG:COG5209
GeneTree:ENSGT00390000001225 HOGENOM:HOG000192069 KO:K12606
OMA:CLPDQLR InterPro:IPR007216 PANTHER:PTHR12262 GO:GO:2000327
EMBL:BC151334 IPI:IPI00708460 RefSeq:NP_001094637.1
UniGene:Bt.23678 ProteinModelPortal:A7MB47 SMR:A7MB47 STRING:A7MB47
PRIDE:A7MB47 Ensembl:ENSBTAT00000004955 GeneID:536537
KEGG:bta:536537 CTD:9125 HOVERGEN:HBG056785 InParanoid:A7MB47
OrthoDB:EOG4W9J4C NextBio:20876967 Uniprot:A7MB47
Length = 299
Score = 971 (346.9 bits), Expect = 9.4e-98, P = 9.4e-98
Identities = 186/261 (71%), Positives = 220/261 (84%)
Query: 46 DLSNPDLRENALLELSKNKELFQDLAPFVWNSFGTIAALIQEIVSIYPVLSPPNLTPAQS 105
+LS+P+ RENALLELSK +E DLAP +W+SFGTIAAL+QEIV+IYP ++PP LT QS
Sbjct: 28 ELSSPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQS 87
Query: 106 NRVCNALALLQCVASHPDTRMLFLNAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALV 165
NRVCNALALLQCVASHP+TR FL AHIPL+LYPFL+T SK+RPFEYLRLTSLGVIGALV
Sbjct: 88 NRVCNALALLQCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALV 147
Query: 166 KVDDTEVISFLLSTEIIPLCLRTMEMGSELSKTVATFIVQKILLDDVGLDYICTTAERFF 225
K D+ EVI+FLL+TEIIPLCLR ME GSELSKTVATFI+QKILLDD GL YIC T ERF
Sbjct: 148 KTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKILLDDTGLAYICQTYERFS 207
Query: 226 AVGRVLGNMVAALAEQPSSRLLKHIIRCYLRLSDNPRACDALRSCLPDMLRDATFSSCLR 285
V +LG MV L+++PS+RLLKH++RCYLRLSDNPRA +ALR CLPD L+D TF+ L+
Sbjct: 208 HVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQCLPDQLKDTTFAQVLK 267
Query: 286 EDPTTRRWLQQLLHNVGVNRV 306
+D TT+RWL QL+ N+ +V
Sbjct: 268 DDTTTKRWLAQLVKNLQEGQV 288
>UNIPROTKB|Q92600 [details] [associations]
symbol:RQCD1 "Cell differentiation protein RCD1 homolog"
species:9606 "Homo sapiens" [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0019221
"cytokine-mediated signaling pathway" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=ISS] [GO:0005515 "protein binding" evidence=IPI]
[GO:2000327 "positive regulation of ligand-dependent nuclear
receptor transcription coactivator activity" evidence=IDA]
[GO:0033147 "negative regulation of intracellular estrogen receptor
signaling pathway" evidence=IMP] [GO:0030014 "CCR4-NOT complex"
evidence=IDA] [GO:0007548 "sex differentiation" evidence=TAS]
[GO:0000288 "nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR016024
Pfam:PF04078 GO:GO:0005829 GO:GO:0005634 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0006355 EMBL:CH471063
GO:GO:0019221 GO:GO:0006351 GO:GO:0000932 GO:GO:0007548
GO:GO:0000289 eggNOG:COG5209 HOGENOM:HOG000192069 KO:K12606
InterPro:IPR007216 PANTHER:PTHR12262 GO:GO:2000327 CTD:9125
HOVERGEN:HBG056785 OrthoDB:EOG4W9J4C EMBL:D87957 EMBL:BC007102
EMBL:BC137455 EMBL:BC137456 IPI:IPI00023101 RefSeq:NP_001258564.1
RefSeq:NP_005435.1 UniGene:Hs.148767 PDB:2FV2 PDBsum:2FV2
ProteinModelPortal:Q92600 SMR:Q92600 DIP:DIP-46840N IntAct:Q92600
MINT:MINT-1162783 STRING:Q92600 PhosphoSite:Q92600 DMDM:74716599
PaxDb:Q92600 PRIDE:Q92600 DNASU:9125 Ensembl:ENST00000273064
Ensembl:ENST00000542068 GeneID:9125 KEGG:hsa:9125 UCSC:uc010zkh.2
GeneCards:GC02P219433 HGNC:HGNC:10445 HPA:HPA046622 MIM:612054
neXtProt:NX_Q92600 PharmGKB:PA34859 InParanoid:Q92600
PhylomeDB:Q92600 ChiTaRS:RQCD1 EvolutionaryTrace:Q92600
GenomeRNAi:9125 NextBio:34205 ArrayExpress:Q92600 Bgee:Q92600
CleanEx:HS_RQCD1 Genevestigator:Q92600 Uniprot:Q92600
Length = 299
Score = 971 (346.9 bits), Expect = 9.4e-98, P = 9.4e-98
Identities = 186/261 (71%), Positives = 220/261 (84%)
Query: 46 DLSNPDLRENALLELSKNKELFQDLAPFVWNSFGTIAALIQEIVSIYPVLSPPNLTPAQS 105
+LS+P+ RENALLELSK +E DLAP +W+SFGTIAAL+QEIV+IYP ++PP LT QS
Sbjct: 28 ELSSPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQS 87
Query: 106 NRVCNALALLQCVASHPDTRMLFLNAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALV 165
NRVCNALALLQCVASHP+TR FL AHIPL+LYPFL+T SK+RPFEYLRLTSLGVIGALV
Sbjct: 88 NRVCNALALLQCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALV 147
Query: 166 KVDDTEVISFLLSTEIIPLCLRTMEMGSELSKTVATFIVQKILLDDVGLDYICTTAERFF 225
K D+ EVI+FLL+TEIIPLCLR ME GSELSKTVATFI+QKILLDD GL YIC T ERF
Sbjct: 148 KTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKILLDDTGLAYICQTYERFS 207
Query: 226 AVGRVLGNMVAALAEQPSSRLLKHIIRCYLRLSDNPRACDALRSCLPDMLRDATFSSCLR 285
V +LG MV L+++PS+RLLKH++RCYLRLSDNPRA +ALR CLPD L+D TF+ L+
Sbjct: 208 HVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQCLPDQLKDTTFAQVLK 267
Query: 286 EDPTTRRWLQQLLHNVGVNRV 306
+D TT+RWL QL+ N+ +V
Sbjct: 268 DDTTTKRWLAQLVKNLQEGQV 288
>UNIPROTKB|F2Z5T0 [details] [associations]
symbol:RQCD1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2000327 "positive regulation of ligand-dependent
nuclear receptor transcription coactivator activity" evidence=IEA]
[GO:0019221 "cytokine-mediated signaling pathway" evidence=IEA]
[GO:0000932 "cytoplasmic mRNA processing body" evidence=IEA]
InterPro:IPR016024 Pfam:PF04078 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0019221 GO:GO:0000932
GeneTree:ENSGT00390000001225 KO:K12606 OMA:CLPDQLR
InterPro:IPR007216 PANTHER:PTHR12262 EMBL:CU570813
RefSeq:XP_001925255.2 UniGene:Ssc.2149 ProteinModelPortal:F2Z5T0
SMR:F2Z5T0 PRIDE:F2Z5T0 Ensembl:ENSSSCT00000017634 GeneID:100153939
KEGG:ssc:100153939 Uniprot:F2Z5T0
Length = 299
Score = 971 (346.9 bits), Expect = 9.4e-98, P = 9.4e-98
Identities = 186/261 (71%), Positives = 220/261 (84%)
Query: 46 DLSNPDLRENALLELSKNKELFQDLAPFVWNSFGTIAALIQEIVSIYPVLSPPNLTPAQS 105
+LS+P+ RENALLELSK +E DLAP +W+SFGTIAAL+QEIV+IYP ++PP LT QS
Sbjct: 28 ELSSPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQS 87
Query: 106 NRVCNALALLQCVASHPDTRMLFLNAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALV 165
NRVCNALALLQCVASHP+TR FL AHIPL+LYPFL+T SK+RPFEYLRLTSLGVIGALV
Sbjct: 88 NRVCNALALLQCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALV 147
Query: 166 KVDDTEVISFLLSTEIIPLCLRTMEMGSELSKTVATFIVQKILLDDVGLDYICTTAERFF 225
K D+ EVI+FLL+TEIIPLCLR ME GSELSKTVATFI+QKILLDD GL YIC T ERF
Sbjct: 148 KTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKILLDDTGLAYICQTYERFS 207
Query: 226 AVGRVLGNMVAALAEQPSSRLLKHIIRCYLRLSDNPRACDALRSCLPDMLRDATFSSCLR 285
V +LG MV L+++PS+RLLKH++RCYLRLSDNPRA +ALR CLPD L+D TF+ L+
Sbjct: 208 HVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQCLPDQLKDTTFAQVLK 267
Query: 286 EDPTTRRWLQQLLHNVGVNRV 306
+D TT+RWL QL+ N+ +V
Sbjct: 268 DDTTTKRWLAQLVKNLQEGQV 288
>UNIPROTKB|Q4R347 [details] [associations]
symbol:RQCD1 "Cell differentiation protein RCD1 homolog"
species:9541 "Macaca fascicularis" [GO:0000932 "cytoplasmic mRNA
processing body" evidence=ISS] [GO:2000327 "positive regulation of
ligand-dependent nuclear receptor transcription coactivator
activity" evidence=ISS] InterPro:IPR016024 Pfam:PF04078
GO:GO:0005634 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0006355 GO:GO:0006351 GO:GO:0000932 InterPro:IPR007216
PANTHER:PTHR12262 GO:GO:2000327 HOVERGEN:HBG056785 EMBL:AB179421
ProteinModelPortal:Q4R347 SMR:Q4R347 PRIDE:Q4R347 Uniprot:Q4R347
Length = 299
Score = 971 (346.9 bits), Expect = 9.4e-98, P = 9.4e-98
Identities = 186/261 (71%), Positives = 220/261 (84%)
Query: 46 DLSNPDLRENALLELSKNKELFQDLAPFVWNSFGTIAALIQEIVSIYPVLSPPNLTPAQS 105
+LS+P+ RENALLELSK +E DLAP +W+SFGTIAAL+QEIV+IYP ++PP LT QS
Sbjct: 28 ELSSPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQS 87
Query: 106 NRVCNALALLQCVASHPDTRMLFLNAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALV 165
NRVCNALALLQCVASHP+TR FL AHIPL+LYPFL+T SK+RPFEYLRLTSLGVIGALV
Sbjct: 88 NRVCNALALLQCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALV 147
Query: 166 KVDDTEVISFLLSTEIIPLCLRTMEMGSELSKTVATFIVQKILLDDVGLDYICTTAERFF 225
K D+ EVI+FLL+TEIIPLCLR ME GSELSKTVATFI+QKILLDD GL YIC T ERF
Sbjct: 148 KTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKILLDDTGLAYICQTYERFS 207
Query: 226 AVGRVLGNMVAALAEQPSSRLLKHIIRCYLRLSDNPRACDALRSCLPDMLRDATFSSCLR 285
V +LG MV L+++PS+RLLKH++RCYLRLSDNPRA +ALR CLPD L+D TF+ L+
Sbjct: 208 HVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQCLPDQLKDTTFAQVLK 267
Query: 286 EDPTTRRWLQQLLHNVGVNRV 306
+D TT+RWL QL+ N+ +V
Sbjct: 268 DDTTTKRWLAQLVKNLQEGQV 288
>UNIPROTKB|Q5R6Z6 [details] [associations]
symbol:RQCD1 "Cell differentiation protein RCD1 homolog"
species:9601 "Pongo abelii" [GO:0000932 "cytoplasmic mRNA
processing body" evidence=ISS] [GO:2000327 "positive regulation of
ligand-dependent nuclear receptor transcription coactivator
activity" evidence=ISS] InterPro:IPR016024 Pfam:PF04078
GO:GO:0005634 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0006355 GO:GO:0019221 GO:GO:0006351 GO:GO:0000932
GeneTree:ENSGT00390000001225 HOGENOM:HOG000192069 KO:K12606
OMA:CLPDQLR InterPro:IPR007216 PANTHER:PTHR12262 GO:GO:2000327
CTD:9125 HOVERGEN:HBG056785 EMBL:CR859645 EMBL:CR860327
RefSeq:NP_001126453.1 UniGene:Pab.1164 ProteinModelPortal:Q5R6Z6
SMR:Q5R6Z6 PRIDE:Q5R6Z6 Ensembl:ENSPPYT00000015320 GeneID:100173439
KEGG:pon:100173439 InParanoid:Q5R6Z6 Uniprot:Q5R6Z6
Length = 299
Score = 971 (346.9 bits), Expect = 9.4e-98, P = 9.4e-98
Identities = 186/261 (71%), Positives = 220/261 (84%)
Query: 46 DLSNPDLRENALLELSKNKELFQDLAPFVWNSFGTIAALIQEIVSIYPVLSPPNLTPAQS 105
+LS+P+ RENALLELSK +E DLAP +W+SFGTIAAL+QEIV+IYP ++PP LT QS
Sbjct: 28 ELSSPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQS 87
Query: 106 NRVCNALALLQCVASHPDTRMLFLNAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALV 165
NRVCNALALLQCVASHP+TR FL AHIPL+LYPFL+T SK+RPFEYLRLTSLGVIGALV
Sbjct: 88 NRVCNALALLQCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALV 147
Query: 166 KVDDTEVISFLLSTEIIPLCLRTMEMGSELSKTVATFIVQKILLDDVGLDYICTTAERFF 225
K D+ EVI+FLL+TEIIPLCLR ME GSELSKTVATFI+QKILLDD GL YIC T ERF
Sbjct: 148 KTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKILLDDTGLAYICQTYERFS 207
Query: 226 AVGRVLGNMVAALAEQPSSRLLKHIIRCYLRLSDNPRACDALRSCLPDMLRDATFSSCLR 285
V +LG MV L+++PS+RLLKH++RCYLRLSDNPRA +ALR CLPD L+D TF+ L+
Sbjct: 208 HVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQCLPDQLKDTTFAQVLK 267
Query: 286 EDPTTRRWLQQLLHNVGVNRV 306
+D TT+RWL QL+ N+ +V
Sbjct: 268 DDTTTKRWLAQLVKNLQEGQV 288
>MGI|MGI:1928902 [details] [associations]
symbol:Rqcd1 "rcd1 (required for cell differentiation)
homolog 1 (S. pombe)" species:10090 "Mus musculus" [GO:0000932
"cytoplasmic mRNA processing body" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0019221
"cytokine-mediated signaling pathway" evidence=IDA] [GO:0030014
"CCR4-NOT complex" evidence=ISO] [GO:0033147 "negative regulation
of intracellular estrogen receptor signaling pathway" evidence=ISO]
[GO:2000327 "positive regulation of ligand-dependent nuclear
receptor transcription coactivator activity" evidence=ISO]
InterPro:IPR016024 MGI:MGI:1928902 Pfam:PF04078 GO:GO:0005634
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0006355
GO:GO:0019221 GO:GO:0006351 GO:GO:0000932 eggNOG:COG5209
GeneTree:ENSGT00390000001225 HOGENOM:HOG000192069 KO:K12606
OMA:CLPDQLR InterPro:IPR007216 PANTHER:PTHR12262 GO:GO:2000327
CTD:9125 HOVERGEN:HBG056785 OrthoDB:EOG4W9J4C EMBL:AF221849
EMBL:AK005025 EMBL:BC050898 EMBL:BC051948 IPI:IPI00123602
RefSeq:NP_067358.1 UniGene:Mm.291708 ProteinModelPortal:Q9JKY0
SMR:Q9JKY0 DIP:DIP-34266N IntAct:Q9JKY0 STRING:Q9JKY0
PhosphoSite:Q9JKY0 PaxDb:Q9JKY0 PRIDE:Q9JKY0
Ensembl:ENSMUST00000087215 GeneID:58184 KEGG:mmu:58184
UCSC:uc007bmf.2 InParanoid:Q9JKY0 NextBio:314143 Bgee:Q9JKY0
Genevestigator:Q9JKY0 Uniprot:Q9JKY0
Length = 299
Score = 971 (346.9 bits), Expect = 9.4e-98, P = 9.4e-98
Identities = 186/261 (71%), Positives = 220/261 (84%)
Query: 46 DLSNPDLRENALLELSKNKELFQDLAPFVWNSFGTIAALIQEIVSIYPVLSPPNLTPAQS 105
+LS+P+ RENALLELSK +E DLAP +W+SFGTIAAL+QEIV+IYP ++PP LT QS
Sbjct: 28 ELSSPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQS 87
Query: 106 NRVCNALALLQCVASHPDTRMLFLNAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALV 165
NRVCNALALLQCVASHP+TR FL AHIPL+LYPFL+T SK+RPFEYLRLTSLGVIGALV
Sbjct: 88 NRVCNALALLQCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALV 147
Query: 166 KVDDTEVISFLLSTEIIPLCLRTMEMGSELSKTVATFIVQKILLDDVGLDYICTTAERFF 225
K D+ EVI+FLL+TEIIPLCLR ME GSELSKTVATFI+QKILLDD GL YIC T ERF
Sbjct: 148 KTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKILLDDTGLAYICQTYERFS 207
Query: 226 AVGRVLGNMVAALAEQPSSRLLKHIIRCYLRLSDNPRACDALRSCLPDMLRDATFSSCLR 285
V +LG MV L+++PS+RLLKH++RCYLRLSDNPRA +ALR CLPD L+D TF+ L+
Sbjct: 208 HVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQCLPDQLKDTTFAQVLK 267
Query: 286 EDPTTRRWLQQLLHNVGVNRV 306
+D TT+RWL QL+ N+ +V
Sbjct: 268 DDTTTKRWLAQLVKNLQEGQV 288
>RGD|1311495 [details] [associations]
symbol:Rqcd1 "Rcd1 required for cell differentiation1 homolog
(S. pombe)" species:10116 "Rattus norvegicus" [GO:0000932
"cytoplasmic mRNA processing body" evidence=ISO;ISS] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0019221 "cytokine-mediated signaling pathway"
evidence=IEA;ISO] [GO:0030014 "CCR4-NOT complex" evidence=ISO]
[GO:0033147 "negative regulation of intracellular estrogen receptor
signaling pathway" evidence=ISO] [GO:2000327 "positive regulation
of ligand-dependent nuclear receptor transcription coactivator
activity" evidence=ISO;ISS] InterPro:IPR016024 RGD:1311495
Pfam:PF04078 GO:GO:0005634 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0006355 GO:GO:0019221 GO:GO:0006351
GO:GO:0000932 eggNOG:COG5209 GeneTree:ENSGT00390000001225
HOGENOM:HOG000192069 KO:K12606 InterPro:IPR007216 PANTHER:PTHR12262
GO:GO:2000327 CTD:9125 HOVERGEN:HBG056785 OrthoDB:EOG4W9J4C
EMBL:BC087134 IPI:IPI00211468 RefSeq:NP_001009357.1
UniGene:Rn.18033 ProteinModelPortal:Q5PQL2 SMR:Q5PQL2 IntAct:Q5PQL2
STRING:Q5PQL2 PRIDE:Q5PQL2 Ensembl:ENSRNOT00000021548 GeneID:301513
KEGG:rno:301513 UCSC:RGD:1311495 InParanoid:Q5PQL2 NextBio:648869
Genevestigator:Q5PQL2 Uniprot:Q5PQL2
Length = 299
Score = 971 (346.9 bits), Expect = 9.4e-98, P = 9.4e-98
Identities = 186/261 (71%), Positives = 220/261 (84%)
Query: 46 DLSNPDLRENALLELSKNKELFQDLAPFVWNSFGTIAALIQEIVSIYPVLSPPNLTPAQS 105
+LS+P+ RENALLELSK +E DLAP +W+SFGTIAAL+QEIV+IYP ++PP LT QS
Sbjct: 28 ELSSPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQS 87
Query: 106 NRVCNALALLQCVASHPDTRMLFLNAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALV 165
NRVCNALALLQCVASHP+TR FL AHIPL+LYPFL+T SK+RPFEYLRLTSLGVIGALV
Sbjct: 88 NRVCNALALLQCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALV 147
Query: 166 KVDDTEVISFLLSTEIIPLCLRTMEMGSELSKTVATFIVQKILLDDVGLDYICTTAERFF 225
K D+ EVI+FLL+TEIIPLCLR ME GSELSKTVATFI+QKILLDD GL YIC T ERF
Sbjct: 148 KTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKILLDDTGLAYICQTYERFS 207
Query: 226 AVGRVLGNMVAALAEQPSSRLLKHIIRCYLRLSDNPRACDALRSCLPDMLRDATFSSCLR 285
V +LG MV L+++PS+RLLKH++RCYLRLSDNPRA +ALR CLPD L+D TF+ L+
Sbjct: 208 HVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQCLPDQLKDTTFAQVLK 267
Query: 286 EDPTTRRWLQQLLHNVGVNRV 306
+D TT+RWL QL+ N+ +V
Sbjct: 268 DDTTTKRWLAQLVKNLQEGQV 288
>GENEDB_PFALCIPARUM|PFE0375w [details] [associations]
symbol:PFE0375w "cell differentiation protein
rcd1, putative" species:5833 "Plasmodium falciparum" [GO:0030154
"cell differentiation" evidence=ISS] InterPro:IPR016024
Pfam:PF04078 GO:GO:0030154 SUPFAM:SSF48371 EMBL:AL844504 KO:K12606
InterPro:IPR007216 PANTHER:PTHR12262 OMA:EININIP
RefSeq:XP_001351634.1 ProteinModelPortal:Q8I427 SMR:Q8I427
MINT:MINT-1662755 EnsemblProtists:PFE0375w:mRNA GeneID:812876
KEGG:pfa:PFE0375w EuPathDB:PlasmoDB:PF3D7_0507600 Uniprot:Q8I427
Length = 652
Score = 969 (346.2 bits), Expect = 1.5e-97, P = 1.5e-97
Identities = 188/272 (69%), Positives = 221/272 (81%)
Query: 32 NKDRKMASAEHLVLDLSNPDLRENALLELSKNKELFQDLAPFVWNSFGTIAALIQEIVSI 91
N + + LV DL + RENALLELS+ +E + D+AP +WNSFGTI L+QEIVSI
Sbjct: 221 NNEEEKKKVYQLVYDLCFSEKRENALLELSRKRETYHDIAPVLWNSFGTITTLLQEIVSI 280
Query: 92 YPVLSPPNLTPAQSNRVCNALALLQCVASHPDTRMLFLNAHIPLYLYPFLNTTSKSRPFE 151
YP LSPP LT + SNRVCN+LALLQCVASHP+T+ FLNAHIPL+LYPFLN SK+RPFE
Sbjct: 281 YPQLSPPLLTTSSSNRVCNSLALLQCVASHPETKQHFLNAHIPLFLYPFLNAESKNRPFE 340
Query: 152 YLRLTSLGVIGALVKVDDTEVISFLLSTEIIPLCLRTMEMGSELSKTVATFIVQKILLDD 211
YLRLTSLGVIGALVKVD+ EVI+FLL TEIIPLCLR ME GSELSKTVATFIVQKIL+D+
Sbjct: 341 YLRLTSLGVIGALVKVDNPEVINFLLQTEIIPLCLRIMETGSELSKTVATFIVQKILIDE 400
Query: 212 VGLDYICTTAERFFAVGRVLGNMVAALAEQPSSRLLKHIIRCYLRLSDNPRACDALRSCL 271
+GL+YIC T ERF+AV VL NMV +L E PSSRLLKHI+RCYLRLS+N RA +AL+ CL
Sbjct: 401 LGLNYICATPERFYAVSTVLANMVNSLVENPSSRLLKHIVRCYLRLSENARALEALKYCL 460
Query: 272 PDMLRDA--TFSSCLREDPTTRRWLQQLLHNV 301
P+ LR TF CL+EDP T++WL QLL+N+
Sbjct: 461 PEPLRHVHKTFLPCLKEDPFTKKWLLQLLYNI 492
>UNIPROTKB|Q8I427 [details] [associations]
symbol:PFE0375w "Cell differentiation protein rcd1,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0030154
"cell differentiation" evidence=ISS] InterPro:IPR016024
Pfam:PF04078 GO:GO:0030154 SUPFAM:SSF48371 EMBL:AL844504 KO:K12606
InterPro:IPR007216 PANTHER:PTHR12262 OMA:EININIP
RefSeq:XP_001351634.1 ProteinModelPortal:Q8I427 SMR:Q8I427
MINT:MINT-1662755 EnsemblProtists:PFE0375w:mRNA GeneID:812876
KEGG:pfa:PFE0375w EuPathDB:PlasmoDB:PF3D7_0507600 Uniprot:Q8I427
Length = 652
Score = 969 (346.2 bits), Expect = 1.5e-97, P = 1.5e-97
Identities = 188/272 (69%), Positives = 221/272 (81%)
Query: 32 NKDRKMASAEHLVLDLSNPDLRENALLELSKNKELFQDLAPFVWNSFGTIAALIQEIVSI 91
N + + LV DL + RENALLELS+ +E + D+AP +WNSFGTI L+QEIVSI
Sbjct: 221 NNEEEKKKVYQLVYDLCFSEKRENALLELSRKRETYHDIAPVLWNSFGTITTLLQEIVSI 280
Query: 92 YPVLSPPNLTPAQSNRVCNALALLQCVASHPDTRMLFLNAHIPLYLYPFLNTTSKSRPFE 151
YP LSPP LT + SNRVCN+LALLQCVASHP+T+ FLNAHIPL+LYPFLN SK+RPFE
Sbjct: 281 YPQLSPPLLTTSSSNRVCNSLALLQCVASHPETKQHFLNAHIPLFLYPFLNAESKNRPFE 340
Query: 152 YLRLTSLGVIGALVKVDDTEVISFLLSTEIIPLCLRTMEMGSELSKTVATFIVQKILLDD 211
YLRLTSLGVIGALVKVD+ EVI+FLL TEIIPLCLR ME GSELSKTVATFIVQKIL+D+
Sbjct: 341 YLRLTSLGVIGALVKVDNPEVINFLLQTEIIPLCLRIMETGSELSKTVATFIVQKILIDE 400
Query: 212 VGLDYICTTAERFFAVGRVLGNMVAALAEQPSSRLLKHIIRCYLRLSDNPRACDALRSCL 271
+GL+YIC T ERF+AV VL NMV +L E PSSRLLKHI+RCYLRLS+N RA +AL+ CL
Sbjct: 401 LGLNYICATPERFYAVSTVLANMVNSLVENPSSRLLKHIVRCYLRLSENARALEALKYCL 460
Query: 272 PDMLRDA--TFSSCLREDPTTRRWLQQLLHNV 301
P+ LR TF CL+EDP T++WL QLL+N+
Sbjct: 461 PEPLRHVHKTFLPCLKEDPFTKKWLLQLLYNI 492
>ZFIN|ZDB-GENE-030131-1558 [details] [associations]
symbol:rqcd1 "RCD1 required for cell
differentiation1 homolog (S. pombe)" species:7955 "Danio rerio"
[GO:2000327 "positive regulation of ligand-dependent nuclear
receptor transcription coactivator activity" evidence=ISS]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA] Pfam:PF04078 ZFIN:ZDB-GENE-030131-1558 GO:GO:0005634
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0006355 GO:GO:0006351
GO:GO:0000932 eggNOG:COG5209 GeneTree:ENSGT00390000001225
HOGENOM:HOG000192069 KO:K12606 OMA:CLPDQLR InterPro:IPR007216
PANTHER:PTHR12262 GO:GO:2000327 CTD:9125 HOVERGEN:HBG056785
OrthoDB:EOG4W9J4C EMBL:BX548072 EMBL:BC067547 IPI:IPI00500235
RefSeq:NP_999925.1 UniGene:Dr.75506 ProteinModelPortal:Q6NWL4
SMR:Q6NWL4 STRING:Q6NWL4 PRIDE:Q6NWL4 DNASU:406632
Ensembl:ENSDART00000047464 Ensembl:ENSDART00000143574 GeneID:406632
KEGG:dre:406632 InParanoid:Q6NWL4 NextBio:20818172 Bgee:Q6NWL4
Uniprot:Q6NWL4
Length = 298
Score = 946 (338.1 bits), Expect = 4.2e-95, P = 4.2e-95
Identities = 183/261 (70%), Positives = 217/261 (83%)
Query: 46 DLSNPDLRENALLELSKNKELFQDLAPFVWNSFGTIAALIQEIVSIYPVLSPPNLTPAQS 105
+LS+P+ RENALLELSK +E DLAP +W+S GTIAAL+QEIV+IYP ++PP LT QS
Sbjct: 27 ELSSPETRENALLELSKKRESVTDLAPMLWHSCGTIAALLQEIVNIYPSINPPTLTAHQS 86
Query: 106 NRVCNALALLQCVASHPDTRMLFLNAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALV 165
NRVCNALALLQCVASH +TR FL AHIPL+LYPFL+T SK+RPFEYLRLTSLGVIGALV
Sbjct: 87 NRVCNALALLQCVASHVETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALV 146
Query: 166 KVDDTEVISFLLSTEIIPLCLRTMEMGSELSKTVATFIVQKILLDDVGLDYICTTAERFF 225
K D+ EVI+FLL+TEIIPLCLR ME GSELSKTVATFI+QKILLDD GL YIC T ERF
Sbjct: 147 KTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKILLDDTGLAYICQTYERFS 206
Query: 226 AVGRVLGNMVAALAEQPSSRLLKHIIRCYLRLSDNPRACDALRSCLPDMLRDATFSSCLR 285
V +LG MV L+++PS+RLLKH++RCYLRLSDN RA +ALR CLPD L+D TF+ L+
Sbjct: 207 HVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNSRAREALRQCLPDQLKDTTFAQVLK 266
Query: 286 EDPTTRRWLQQLLHNVGVNRV 306
+D TT+RWL QL+ N+ +V
Sbjct: 267 DDSTTKRWLAQLVKNLQEGQV 287
>UNIPROTKB|G4NB38 [details] [associations]
symbol:MGG_00632 "Cell differentiation protein rcd1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0006352 "DNA-dependent transcription, initiation" evidence=ISS]
[GO:0006354 "DNA-dependent transcription, elongation" evidence=ISS]
[GO:0006402 "mRNA catabolic process" evidence=ISS] [GO:0007548 "sex
differentiation" evidence=ISS] [GO:0030014 "CCR4-NOT complex"
evidence=ISS] [GO:0030154 "cell differentiation" evidence=ISS]
[GO:0031137 "regulation of conjugation with cellular fusion"
evidence=ISS] [GO:0031142 "induction of conjugation upon nitrogen
starvation" evidence=ISS] InterPro:IPR016024 Pfam:PF04078
GO:GO:0005634 GO:GO:0005737 GO:GO:0030154 SUPFAM:SSF48371
EMBL:CM001235 GO:GO:0006352 GO:GO:0003723 GO:GO:0000122
GO:GO:0006402 GO:GO:0007548 GO:GO:0031142 GO:GO:0030014
GO:GO:0030015 KO:K12606 InterPro:IPR007216 PANTHER:PTHR12262
GO:GO:0006354 RefSeq:XP_003718384.1 EnsemblFungi:MGG_00632T0
GeneID:2674803 KEGG:mgr:MGG_00632 Uniprot:G4NB38
Length = 364
Score = 942 (336.7 bits), Expect = 1.1e-94, P = 1.1e-94
Identities = 188/261 (72%), Positives = 216/261 (82%)
Query: 44 VLDLSNPDLRENALLELSKNKELFQDLAPFVWNSFGTIAALIQEIVSIYPVLSPPNLTPA 103
+ DL N + RE ALLELSK +E +LA +W+SFG + +L+QEI+S+Y +L+P LT A
Sbjct: 93 IADLLNENTREAALLELSKKREQVPELALILWHSFGVMTSLLQEIISVYTLLNPSQLTAA 152
Query: 104 QSNRVCNALALLQCVASHPDTRMLFLNAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGA 163
SNRVCNALALLQCVASH +TR LFLNAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGA
Sbjct: 153 ASNRVCNALALLQCVASHNETRTLFLNAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGA 212
Query: 164 LVKVDDTEVISFLLSTEIIPLCLRTMEMGSELSKTVATFIVQKILLDDVGLDYICTTAER 223
LVK D +EVI+FLL+TEIIPLCLR ME GSELSKTVA FIVQKILLDD GL+YIC T ER
Sbjct: 213 LVKNDSSEVINFLLTTEIIPLCLRIMETGSELSKTVAIFIVQKILLDDNGLNYICATYER 272
Query: 224 FFAVGRVLGNMVAALAEQPSSRLLKHIIRCYLRLSDNPRACDALRSCLPDMLRDATFSSC 283
F+AVG VL NMVA L EQ ++RLLKH++RC+LRLSDN RA +ALR CLPD LRDATFSS
Sbjct: 273 FYAVGTVLSNMVAQLVEQQTARLLKHVVRCFLRLSDNARAREALRQCLPDPLRDATFSSV 332
Query: 284 LREDPTTRRWLQQLLHNVGVN 304
LR+D T+R L QLL N+ N
Sbjct: 333 LRDDAATKRCLTQLLINLADN 353
>FB|FBgn0031047 [details] [associations]
symbol:Rcd-1 "Required for cell differentiation 1 ortholog"
species:7227 "Drosophila melanogaster" [GO:0008150
"biological_process" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] [GO:0030014 "CCR4-NOT complex" evidence=IDA]
Pfam:PF04078 Gene3D:1.25.10.10 InterPro:IPR011989 EMBL:AE014298
GO:GO:0030014 eggNOG:COG5209 GeneTree:ENSGT00390000001225 KO:K12606
OMA:CLPDQLR InterPro:IPR007216 PANTHER:PTHR12262 EMBL:AY118785
RefSeq:NP_608335.1 RefSeq:NP_728284.1 UniGene:Dm.7239 SMR:Q7JVP2
IntAct:Q7JVP2 STRING:Q7JVP2 EnsemblMetazoa:FBtr0074743
EnsemblMetazoa:FBtr0074744 GeneID:32966 KEGG:dme:Dmel_CG14213
UCSC:CG14213-RA CTD:32966 FlyBase:FBgn0031047 InParanoid:Q7JVP2
OrthoDB:EOG4V9S69 ChiTaRS:Rcd-1 GenomeRNAi:32966 NextBio:781271
Uniprot:Q7JVP2
Length = 304
Score = 931 (332.8 bits), Expect = 1.6e-93, P = 1.6e-93
Identities = 181/262 (69%), Positives = 211/262 (80%)
Query: 46 DLSNPDLRENALLELSKNKELFQDLAPFVWNSFGTIAALIQEIVSIYPVLSPPNLTPAQS 105
+L++PD RE ALLELSK +E DLAP +WNSFGT AL+QEIV+IYP ++PP LT QS
Sbjct: 35 ELAHPDTRETALLELSKKRET--DLAPMLWNSFGTACALLQEIVNIYPSITPPTLTAHQS 92
Query: 106 NRVCNALALLQCVASHPDTRMLFLNAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALV 165
NRVCNALALLQCVASHP+TR FL A IPLYLYPFL+TTSK+RPFEYLRLTSLGVIGALV
Sbjct: 93 NRVCNALALLQCVASHPETRTAFLQAQIPLYLYPFLSTTSKTRPFEYLRLTSLGVIGALV 152
Query: 166 KVDDTEVISFLLSTEIIPLCLRTMEMGSELSKTVATFIVQKILLDDVGLDYICTTAERFF 225
K D+ EVI+FLL+TEI+PLCL M+ GSELSKTVATFI+QKILLD+ GL YIC T ERF
Sbjct: 153 KTDEQEVITFLLTTEIVPLCLSIMDSGSELSKTVATFIIQKILLDESGLSYICQTYERFS 212
Query: 226 AVGRVLGNMVAALAEQPSSRLLKHIIRCYLRLSDNPRACDALRSCLPDMLRDATFSSCLR 285
V LG MV LA+ P +RLLKH++RCYLRLSDN RA AL CLPD LRD TF+ CL+
Sbjct: 213 HVAITLGKMVIQLAKDPCARLLKHVVRCYLRLSDNTRARKALGQCLPDQLRDGTFALCLQ 272
Query: 286 EDPTTRRWLQQLLHNVGVNRVP 307
ED +T++WLQ LL N+ + P
Sbjct: 273 EDKSTKQWLQMLLKNLELGATP 294
>ASPGD|ASPL0000012996 [details] [associations]
symbol:AN3669 species:162425 "Emericella nidulans"
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0010515 "negative
regulation of induction of conjugation with cellular fusion"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0003674 "molecular_function"
evidence=ND] Pfam:PF04078 EMBL:BN001302 EMBL:AACD01000061
GO:GO:0030015 eggNOG:COG5209 HOGENOM:HOG000192069 KO:K12606
OMA:CLPDQLR OrthoDB:EOG49CTHV InterPro:IPR007216 PANTHER:PTHR12262
RefSeq:XP_661273.1 ProteinModelPortal:Q5B711 SMR:Q5B711
STRING:Q5B711 EnsemblFungi:CADANIAT00005063 GeneID:2873084
KEGG:ani:AN3669.2 Uniprot:Q5B711
Length = 396
Score = 930 (332.4 bits), Expect = 2.1e-93, P = 2.1e-93
Identities = 188/271 (69%), Positives = 219/271 (80%)
Query: 44 VLDLSNPDLRENALLELSKNKELFQDLAPFVWNSFGTIAALIQEIVSIYPVLSPPNLTPA 103
V +L + + RE AL+ELSK +E +LA +W+SFG + AL+QEI+S+YP+L+P LT A
Sbjct: 126 VAELLDSNRREAALMELSKKREQVPELALVIWHSFGVMTALLQEIISVYPLLNPSQLTAA 185
Query: 104 QSNRVCNALALLQCVASHPDTRMLFLNAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGA 163
SNRVCNALALLQCVASH +TR LFLNAHIPL+LYPFLNTTSKSRPFEYLRLTSLGVIGA
Sbjct: 186 ASNRVCNALALLQCVASHNETRTLFLNAHIPLFLYPFLNTTSKSRPFEYLRLTSLGVIGA 245
Query: 164 LVKVDDTEVISFLLSTEIIPLCLRTMEMGSELSKTVATFIVQKILLDDVGLDYICTTAER 223
LVK D ++VI+FLL+TEIIPLCLR ME GSELSKTVA FIVQKILLDD+GL YIC T ER
Sbjct: 246 LVKNDSSDVINFLLTTEIIPLCLRIMETGSELSKTVAIFIVQKILLDDIGLAYICATYER 305
Query: 224 FFAVGRVLGNMVAALAEQPSSRLLKHIIRCYLRLSDNPRACDALRSCLPDMLRDATFSSC 283
F+AVG VL NMV L EQ + RLLKH++RC+LRLSDN RA +ALR CLP+ LRDATFSS
Sbjct: 306 FYAVGTVLSNMVTQLVEQQTVRLLKHVVRCFLRLSDNSRAREALRQCLPEPLRDATFSSV 365
Query: 284 LREDPTTRRWLQQLLHNVGVNRVPTLQAGTA 314
LR+D T+R L QLL N+ N V AG A
Sbjct: 366 LRDDAATKRCLAQLLINLSDN-VSDGAAGVA 395
>DICTYBASE|DDB_G0269778 [details] [associations]
symbol:DDB_G0269778 "cell differentiation family,
Rcd1-like protein" species:44689 "Dictyostelium discoideum"
[GO:0003674 "molecular_function" evidence=ND] [GO:0030014 "CCR4-NOT
complex" evidence=ISS] [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=ISS]
dictyBase:DDB_G0269778 Pfam:PF04078 EMBL:AAFI02000005
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0006357 GO:GO:0030014
eggNOG:COG5209 KO:K12606 OMA:CLPDQLR InterPro:IPR007216
PANTHER:PTHR12262 RefSeq:XP_646272.1 ProteinModelPortal:Q55D59
SMR:Q55D59 STRING:Q55D59 EnsemblProtists:DDB0216421 GeneID:8617228
KEGG:ddi:DDB_G0269778 InParanoid:Q55D59 Uniprot:Q55D59
Length = 360
Score = 907 (324.3 bits), Expect = 5.7e-91, P = 5.7e-91
Identities = 181/262 (69%), Positives = 216/262 (82%)
Query: 43 LVLDLSNPDLRENALLELSKNKELFQDLAPFVWNSFGTIAALIQEIVSIYPVLSPPNLTP 102
LV DL+ P+ RENAL++LSK +E DLAP + NSFGTIAAL+QEIVSIYP+LSPP L
Sbjct: 54 LVKDLTIPEKRENALVDLSKKRETVPDLAPILLNSFGTIAALLQEIVSIYPLLSPPKLKA 113
Query: 103 AQSNRVCNALALLQCVASHPDTRMLFLNAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIG 162
SNRVCNALALLQCVASHPDTR FL++HIPL+LYPFLNT+SK+RPFEYLRLTSLGVIG
Sbjct: 114 LPSNRVCNALALLQCVASHPDTRTYFLHSHIPLFLYPFLNTSSKNRPFEYLRLTSLGVIG 173
Query: 163 ALVKVDDTEVISFLLSTEIIPLCLRTMEMGSELSKTVATFIVQKILLDDVGLDYICTTAE 222
ALVKVDD+ VI FLLSTEI+ LC+R ME GSELSKTVATFIVQKILLDD+GL+YIC + E
Sbjct: 174 ALVKVDDSTVIDFLLSTEIMTLCVRIMETGSELSKTVATFIVQKILLDDMGLNYICVSNE 233
Query: 223 RFFAVGRVLGNMVAALAEQPSSRLLKHIIRCYLRLSDNPRACDALRSCLPDMLRDATFSS 282
R A VL NM+ L +Q S RLLKH+IRCYLRL+DNP++ ++LR LP+ L++ TF+S
Sbjct: 234 RIMAFLSVLANMIQQLIDQSSPRLLKHVIRCYLRLTDNPKSKESLRQFLPESLKNGTFNS 293
Query: 283 CLRE--DPTTRRWLQQLLHNVG 302
L++ D TT+RWL QLL +G
Sbjct: 294 HLKDEKDFTTKRWLSQLLFLLG 315
>POMBASE|SPAC29B12.06c [details] [associations]
symbol:rcd1 "RNA-binding protein, CCR4-NOT complex
subunit Rcd1" species:4896 "Schizosaccharomyces pombe" [GO:0000122
"negative regulation of transcription from RNA polymerase II
promoter" evidence=IMP] [GO:0003723 "RNA binding" evidence=NAS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0006354 "DNA-dependent transcription, elongation"
evidence=IC] [GO:0006402 "mRNA catabolic process" evidence=IC]
[GO:0007548 "sex differentiation" evidence=IEA] [GO:0010515
"negative regulation of induction of conjugation with cellular
fusion" evidence=IMP] [GO:0030014 "CCR4-NOT complex" evidence=ISO]
[GO:0030154 "cell differentiation" evidence=IEA] [GO:0031138
"negative regulation of conjugation with cellular fusion"
evidence=IGI] InterPro:IPR016024 PomBase:SPAC29B12.06c Pfam:PF04078
GO:GO:0005634 GO:GO:0005737 GO:GO:0030154 EMBL:CU329670
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GenomeReviews:CU329670_GR GO:GO:0003723 GO:GO:0000122 GO:GO:0006402
GO:GO:0007548 GO:GO:0030014 eggNOG:COG5209 HOGENOM:HOG000192069
KO:K12606 OMA:CLPDQLR OrthoDB:EOG49CTHV InterPro:IPR007216
PANTHER:PTHR12262 GO:GO:0006354 GO:GO:0010515 EMBL:D87956
PIR:T43247 RefSeq:NP_594984.1 ProteinModelPortal:Q92368 SMR:Q92368
STRING:Q92368 EnsemblFungi:SPAC29B12.06c.1 GeneID:2542094
KEGG:spo:SPAC29B12.06c NextBio:20803167 Uniprot:Q92368
Length = 283
Score = 891 (318.7 bits), Expect = 2.8e-89, P = 2.8e-89
Identities = 174/258 (67%), Positives = 209/258 (81%)
Query: 44 VLDLSNPDLRENALLELSKNKELFQDLAPFVWNSFGTIAALIQEIVSIYPVLSPPNLTPA 103
++ L + RE AL+ELS+ +E ++DLA +W+S+G + AL+QEI+S+YP+L+PP LT
Sbjct: 18 IIQLVSGTSREQALVELSRKREQYEDLALILWHSYGVMTALLQEIISVYPLLNPPTLTGP 77
Query: 104 QSNRVCNALALLQCVASHPDTRMLFLNAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGA 163
SNRVCNALALLQC+ASHP+TR+ FLNAHI L+LYPFLNT SKS+PFEYLRLTSLGVIGA
Sbjct: 78 TSNRVCNALALLQCIASHPETRIHFLNAHITLFLYPFLNTLSKSKPFEYLRLTSLGVIGA 137
Query: 164 LVKVDDTEVISFLLSTEIIPLCLRTMEMGSELSKTVATFIVQKILLDDVGLDYICTTAER 223
LVK D EVI+FLLSTEIIPLCLR ME GSELSKTVA FIVQK L DDVGL YIC T ER
Sbjct: 138 LVKNDSPEVINFLLSTEIIPLCLRIMENGSELSKTVAIFIVQKFLCDDVGLQYICQTYER 197
Query: 224 FFAVGRVLGNMVAALAEQPSSRLLKHIIRCYLRLSDNPRACDALRSCLPDMLRDATFSSC 283
F+AV VL NMV L + + RLLKH+IRCYLRLSDNPRA +ALR CLP+ LRDATF+
Sbjct: 198 FYAVASVLNNMVMQLVDSFAFRLLKHVIRCYLRLSDNPRAREALRHCLPEPLRDATFAQV 257
Query: 284 LREDPTTRRWLQQLLHNV 301
L++D T++ L QLL N+
Sbjct: 258 LKDDHNTKKCLAQLLINL 275
>WB|WBGene00016139 [details] [associations]
symbol:ntl-9 species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0031581 "hemidesmosome assembly" evidence=IGI]
Pfam:PF04078 GO:GO:0009792 eggNOG:COG5209
GeneTree:ENSGT00390000001225 HOGENOM:HOG000192069 KO:K12606
OMA:CLPDQLR InterPro:IPR007216 PANTHER:PTHR12262 GO:GO:0031581
EMBL:FO080680 PIR:F88445 RefSeq:NP_498048.2
ProteinModelPortal:Q18224 SMR:Q18224 STRING:Q18224 PaxDb:Q18224
EnsemblMetazoa:C26E6.3 GeneID:175669 KEGG:cel:CELE_C26E6.3
UCSC:C26E6.3 CTD:175669 WormBase:C26E6.3 InParanoid:Q18224
NextBio:889142 Uniprot:Q18224
Length = 321
Score = 771 (276.5 bits), Expect = 4.4e-88, Sum P(2) = 4.4e-88
Identities = 158/230 (68%), Positives = 182/230 (79%)
Query: 44 VLDLSNPDLRENALLELSKNKELFQDLAPFVWNSFGTIAALIQEIVSIYPVLSPPNLTPA 103
++DL +P RE ALLELSK ++ DL ++W+SFGT++AL+QE+V+IYP + P NLT A
Sbjct: 34 IIDLRDPPKREAALLELSKKRDSVPDLPIWLWHSFGTMSALLQEVVAIYPAIMPANLTAA 93
Query: 104 QSNRVCNALALLQCVASHPDTRMLFLNAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGA 163
QSNRVCNALAL+QCVASH DTR FL+AHIPLYLYPFL+TT SR FEYLRLTSLGVIGA
Sbjct: 94 QSNRVCNALALMQCVASHRDTRGPFLHAHIPLYLYPFLHTTKVSRSFEYLRLTSLGVIGA 153
Query: 164 LVKVDDTE----VISFLLSTEIIPLCLRTMEMGSELSKTVATFIVQKILLDDVGLDYICT 219
LVK DD E VI+FLLSTEIIPLCLR ME G+ELSKTVATFI+QKILLDD GL YIC
Sbjct: 154 LVKTDDKEQLLIVINFLLSTEIIPLCLRIMEQGTELSKTVATFILQKILLDDTGLLYICQ 213
Query: 220 TAERFFAVGRVLGNMVAALAEQPSSRLLKHIIRCYLRLSDNPR-ACDALR 268
T ERF V +LG MV L +PS RLLKH++RCY RLSDNP DA R
Sbjct: 214 TYERFSHVVLILGKMVMKLTREPSVRLLKHVVRCYSRLSDNPTLTIDAPR 263
Score = 128 (50.1 bits), Expect = 4.4e-88, Sum P(2) = 4.4e-88
Identities = 24/41 (58%), Positives = 30/41 (73%)
Query: 262 RACDALRSCLPDMLRDATFSSCLREDPTTRRWLQQLLHNVG 302
RA AL+ CLPD L+D TF S L+EDP+T WL+QLL +G
Sbjct: 276 RASLALKQCLPDQLKDLTFKSLLKEDPSTMNWLRQLLTTLG 316
>CGD|CAL0003168 [details] [associations]
symbol:orf19.7198 species:5476 "Candida albicans" [GO:0003674
"molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0030015
"CCR4-NOT core complex" evidence=IEA] [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0032968 "positive regulation of transcription
elongation from RNA polymerase II promoter" evidence=IEA]
[GO:0010515 "negative regulation of induction of conjugation with
cellular fusion" evidence=IEA] CGD:CAL0003168 Pfam:PF04078
eggNOG:COG5209 KO:K12606 InterPro:IPR007216 PANTHER:PTHR12262
EMBL:AACQ01000089 RefSeq:XP_715246.1 RefSeq:XP_888989.1
ProteinModelPortal:Q5A097 SMR:Q5A097 STRING:Q5A097 GeneID:3643146
GeneID:3703916 KEGG:cal:CaO19.7198 KEGG:cal:CaO19_7198
Uniprot:Q5A097
Length = 331
Score = 644 (231.8 bits), Expect = 1.5e-79, Sum P(2) = 1.5e-79
Identities = 127/196 (64%), Positives = 154/196 (78%)
Query: 44 VLDLSNPDLRENALLELSKNKELFQDLAPFVWNSFGTIAALIQEIVSIYPVLSPPNLTPA 103
+ +L + RE ALLEL K +E + DLA +WNSFG I L++EI+S+YP L+PPNL+ +
Sbjct: 36 ISELVTGNNRERALLELGKKREQYDDLALVLWNSFGVITVLLEEIISVYPYLNPPNLSAS 95
Query: 104 QSNRVCNALALLQCVASHPDTRMLFLNAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGA 163
SNRVCNALALLQCVAS+ TR LFLNA++PLYLYPFL+T ++ R FEYLRLTSLGVIGA
Sbjct: 96 ISNRVCNALALLQCVASNVQTRTLFLNANLPLYLYPFLSTNARQRSFEYLRLTSLGVIGA 155
Query: 164 LVKVDDTEVISFLLSTEIIPLCLRTMEMGSELSKTVATFIVQKILLDDVGLDYICTTAER 223
LVK D EVI+FLL+TEI+PLCL ME+ SELSKTVA FI+QKILLDD GL Y+CTT ER
Sbjct: 156 LVKNDTPEVINFLLTTEIVPLCLNIMEISSELSKTVAIFILQKILLDDQGLAYVCTTFER 215
Query: 224 FFAVGRVLGNMVAALA 239
F V VL M+ L+
Sbjct: 216 FHTVASVLSKMIDQLS 231
Score = 174 (66.3 bits), Expect = 1.5e-79, Sum P(2) = 1.5e-79
Identities = 34/59 (57%), Positives = 44/59 (74%)
Query: 243 SSRLLKHIIRCYLRLSDNPRACDALRSCLPDMLRDATFSSCLREDPTTRRWLQQLLHNV 301
S RLLKH++RCY+RLSDN A AL + LP+ LRD TFS+ L++D T+R L QLL N+
Sbjct: 269 SGRLLKHVVRCYMRLSDNLEARKALANILPEPLRDGTFSTILQDDLATKRCLSQLLSNI 327
>UNIPROTKB|Q5A097 [details] [associations]
symbol:CAF40 "Potential CCR4-NOT complex associated factor
Caf40p" species:237561 "Candida albicans SC5314" [GO:0003674
"molecular_function" evidence=ND] CGD:CAL0003168 Pfam:PF04078
eggNOG:COG5209 KO:K12606 InterPro:IPR007216 PANTHER:PTHR12262
EMBL:AACQ01000089 RefSeq:XP_715246.1 RefSeq:XP_888989.1
ProteinModelPortal:Q5A097 SMR:Q5A097 STRING:Q5A097 GeneID:3643146
GeneID:3703916 KEGG:cal:CaO19.7198 KEGG:cal:CaO19_7198
Uniprot:Q5A097
Length = 331
Score = 644 (231.8 bits), Expect = 1.5e-79, Sum P(2) = 1.5e-79
Identities = 127/196 (64%), Positives = 154/196 (78%)
Query: 44 VLDLSNPDLRENALLELSKNKELFQDLAPFVWNSFGTIAALIQEIVSIYPVLSPPNLTPA 103
+ +L + RE ALLEL K +E + DLA +WNSFG I L++EI+S+YP L+PPNL+ +
Sbjct: 36 ISELVTGNNRERALLELGKKREQYDDLALVLWNSFGVITVLLEEIISVYPYLNPPNLSAS 95
Query: 104 QSNRVCNALALLQCVASHPDTRMLFLNAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGA 163
SNRVCNALALLQCVAS+ TR LFLNA++PLYLYPFL+T ++ R FEYLRLTSLGVIGA
Sbjct: 96 ISNRVCNALALLQCVASNVQTRTLFLNANLPLYLYPFLSTNARQRSFEYLRLTSLGVIGA 155
Query: 164 LVKVDDTEVISFLLSTEIIPLCLRTMEMGSELSKTVATFIVQKILLDDVGLDYICTTAER 223
LVK D EVI+FLL+TEI+PLCL ME+ SELSKTVA FI+QKILLDD GL Y+CTT ER
Sbjct: 156 LVKNDTPEVINFLLTTEIVPLCLNIMEISSELSKTVAIFILQKILLDDQGLAYVCTTFER 215
Query: 224 FFAVGRVLGNMVAALA 239
F V VL M+ L+
Sbjct: 216 FHTVASVLSKMIDQLS 231
Score = 174 (66.3 bits), Expect = 1.5e-79, Sum P(2) = 1.5e-79
Identities = 34/59 (57%), Positives = 44/59 (74%)
Query: 243 SSRLLKHIIRCYLRLSDNPRACDALRSCLPDMLRDATFSSCLREDPTTRRWLQQLLHNV 301
S RLLKH++RCY+RLSDN A AL + LP+ LRD TFS+ L++D T+R L QLL N+
Sbjct: 269 SGRLLKHVVRCYMRLSDNLEARKALANILPEPLRDGTFSTILQDDLATKRCLSQLLSNI 327
>SGD|S000005232 [details] [associations]
symbol:CAF40 "Component of the CCR4-NOT transcriptional
complex" species:4932 "Saccharomyces cerevisiae" [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0032968 "positive
regulation of transcription elongation from RNA polymerase II
promoter" evidence=IDA;IPI] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IPI] [GO:0030015 "CCR4-NOT core complex"
evidence=IPI] [GO:0003674 "molecular_function" evidence=ND]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
InterPro:IPR016024 SGD:S000005232 Pfam:PF04078 GO:GO:0005634
GO:GO:0005737 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
EMBL:BK006947 GO:GO:0006351 GO:GO:0032968 GO:GO:0030015 EMBL:Z71564
PIR:S63262 RefSeq:NP_014111.1 ProteinModelPortal:P53829 SMR:P53829
DIP:DIP-1995N IntAct:P53829 MINT:MINT-393536 STRING:P53829
PaxDb:P53829 PeptideAtlas:P53829 EnsemblFungi:YNL288W GeneID:855428
KEGG:sce:YNL288W CYGD:YNL288w eggNOG:COG5209
GeneTree:ENSGT00390000001225 HOGENOM:HOG000192069 KO:K12606
OMA:CLPDQLR OrthoDB:EOG49CTHV NextBio:979301 Genevestigator:P53829
GermOnline:YNL288W InterPro:IPR007216 PANTHER:PTHR12262
Uniprot:P53829
Length = 373
Score = 785 (281.4 bits), Expect = 4.8e-78, P = 4.8e-78
Identities = 160/258 (62%), Positives = 192/258 (74%)
Query: 42 HLVLDLSNPDLRENALLELSKNKELFQDLAPFVWNSFGTIAALIQEIVSIYPVLSPPNLT 101
H + L+ +E ALLEL + +E F DLA +W+SFG + +L+ EI+S+YP+L P L+
Sbjct: 108 HWICQLTYGPQKEQALLELGRKREQFDDLAVVLWSSFGVMTSLLNEIISVYPMLQPQMLS 167
Query: 102 PAQSNRVCNALALLQCVASHPDTRMLFLNAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVI 161
SNRVCNAL LLQCVASHP+T+ LFL AHIPL+L+PFLNTTS+ R FEYLRLTSLGVI
Sbjct: 168 NNLSNRVCNALVLLQCVASHPETKHLFLQAHIPLFLFPFLNTTSRQRTFEYLRLTSLGVI 227
Query: 162 GALVKVDDTEVISFLLSTEIIPLCLRTMEMGSELSKTVATFIVQKILLDDVGLDYICTTA 221
GALVK D +VI+FLL T+I+PLCLR ME SELSKTVA FI+QKILLDDVGL YIC T
Sbjct: 228 GALVKNDSQDVITFLLRTDIVPLCLRIMESSSELSKTVAIFILQKILLDDVGLQYICATL 287
Query: 222 ERFFAVGRVLGNMVAALA-EQPSSRLLKHIIRCYLRLSDNPRACDALRSCLPDMLRDATF 280
ERF+AV VL +MV L P RLLKHIIRCYLRLSD+ A L+ LP LRD TF
Sbjct: 288 ERFYAVTNVLKDMVEHLTVSTPPGRLLKHIIRCYLRLSDDLEARRLLKIVLPAKLRDNTF 347
Query: 281 SSCLREDPTTRRWLQQLL 298
+ LR+D ++R L QLL
Sbjct: 348 TEVLRDDVGSKRCLAQLL 365
>FB|FBgn0032089 [details] [associations]
symbol:Rcd-1r "Rcd-1 related" species:7227 "Drosophila
melanogaster" [GO:0003674 "molecular_function" evidence=ND]
[GO:0007283 "spermatogenesis" evidence=IEP;IMP] [GO:0005634
"nucleus" evidence=IDA] [GO:0022414 "reproductive process"
evidence=IMP] Pfam:PF04078 EMBL:AE014134 GO:GO:0007283
eggNOG:COG5209 GeneTree:ENSGT00390000001225 InterPro:IPR007216
PANTHER:PTHR12262 EMBL:AY075185 EMBL:HM358897 EMBL:HM358903
EMBL:HM358906 EMBL:HM358910 RefSeq:NP_609269.1 UniGene:Dm.19803
SMR:Q9VLF2 IntAct:Q9VLF2 MINT:MINT-791139 STRING:Q9VLF2
EnsemblMetazoa:FBtr0079779 GeneID:34229 KEGG:dme:Dmel_CG9573
UCSC:CG9573-RA CTD:34229 FlyBase:FBgn0032089 InParanoid:Q9VLF2
OrthoDB:EOG4GTHVP GenomeRNAi:34229 NextBio:787499 Uniprot:Q9VLF2
Length = 290
Score = 759 (272.2 bits), Expect = 2.7e-75, P = 2.7e-75
Identities = 149/264 (56%), Positives = 191/264 (72%)
Query: 43 LVLDLSNPDLRENALLELSKNKELFQDLAPFVWNSFGTIAALIQEIVSIYPVLSPPNLTP 102
L+++L+ P RE ALLELSKN + DLAP +W S GT L+QEIV+IYP+++ P L
Sbjct: 23 LIIELAYPATRETALLELSKNT--YADLAPMLWKSVGTTCTLLQEIVNIYPIITTPVLKA 80
Query: 103 AQSNRVCNALALLQCVASHPDTRMLFLNAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIG 162
QSNRVC AL LLQCVASHP+TR FL IP+YLYPFL+TT KSRPFE LRLT+LGVI
Sbjct: 81 NQSNRVCYALTLLQCVASHPETRPAFLRDQIPMYLYPFLSTTFKSRPFEQLRLTTLGVIN 140
Query: 163 ALVKVDDTEVISFLLSTEIIPLCLRTMEMGSELSKTVATFIVQKILLDDVGLDYICTTAE 222
AL + DTEV+ FL+ +E++P CL M GS+L+K AT I++KILLD++GL YIC +
Sbjct: 141 ALAETGDTEVLIFLIWSEVVPHCLTNMVRGSKLTKIAATSILEKILLDEMGLTYICENHD 200
Query: 223 RFFAVGRVLGNMVAALAEQPSSRLLKHIIRCYLRLSDNPRACDALRSCLPDMLRDATFSS 282
RF V LG MV + + P R+LKH++RCYL L++N RA ALR CLPD+LRD TF+S
Sbjct: 201 RFSQVAITLGKMVIHMLKFPCLRVLKHVVRCYLLLTENARARSALRVCLPDLLRDGTFTS 260
Query: 283 CLREDPTTRRWLQQLLHNVGVNRV 306
++ D T++WLQ LL N+ N V
Sbjct: 261 LVQHDTCTKQWLQMLLKNLQTNAV 284
>DICTYBASE|DDB_G0275289 [details] [associations]
symbol:DDB_G0275289 "cell differentiation family,
Rcd1-like protein" species:44689 "Dictyostelium discoideum"
[GO:0003674 "molecular_function" evidence=ND] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0005634 "nucleus" evidence=IC] InterPro:IPR016024
dictyBase:DDB_G0275289 Pfam:PF04078 GO:GO:0005634 SUPFAM:SSF48371
GO:GO:0006357 EMBL:AAFI02000013 eggNOG:COG5209 InterPro:IPR007216
PANTHER:PTHR12262 RefSeq:XP_643823.1 ProteinModelPortal:Q553Y8
EnsemblProtists:DDB0220000 GeneID:8619870 KEGG:ddi:DDB_G0275289
InParanoid:Q553Y8 OMA:EININIP Uniprot:Q553Y8
Length = 941
Score = 546 (197.3 bits), Expect = 6.1e-52, P = 6.1e-52
Identities = 116/267 (43%), Positives = 169/267 (63%)
Query: 41 EH-LVLDLSNPDLRENALLELSKNKELFQDLAPFVWNSFGTIAALIQEIVSIYPVLSPPN 99
+H L+ DL P RE AL E+ K K+ LA VW + I+ L+QEI+++Y +SPPN
Sbjct: 515 DHQLISDLLEPQKREEALCEIVKRKDSIPSLASLVWFTPCVISVLLQEIMNLYNFISPPN 574
Query: 100 --LTPAQSNRVCNALALLQCVASHPDTRMLFLNAHIPLYLYPFLNTTSKSRPFEYLRLTS 157
L SN+VCN L + Q +AS P+TR LF+ A + Y+YP+L+T SKS+PFEYLRLT+
Sbjct: 575 PKLKARASNKVCNILNIFQVIASDPETRSLFIQAKVISYIYPYLSTNSKSKPFEYLRLTT 634
Query: 158 LGVIGALVKVDDTEVISFLLSTEIIPLCLRTMEMGSELSKTVATFIVQKILLDDVGLDYI 217
LGVI ++K + ++I++L+ +I CL+ ME G++LSKT + FI+QKIL D GL+Y
Sbjct: 635 LGVINTVIKQESQDIINYLIEIDISTPCLKIMENGNDLSKTASAFILQKILNWDDGLNYF 694
Query: 218 CTTAERFFAVGRVLGNMVAALA-EQPSSRLLKHIIRCYLRLSDNPRACDALRSCLPDMLR 276
+ +R + L MV A+ + SSRLLKHI+RCYLRLS+N + D L +P
Sbjct: 695 VQSPKRLSDLTNCLKYMVEAMIPDHMSSRLLKHIVRCYLRLSENLKIRDQLIGWMPTCFS 754
Query: 277 DATFSSCLRE--DPTTRRWLQQLLHNV 301
+ + +++ D +RW QLL N+
Sbjct: 755 NGQLNDFIQKEGDVIVKRWFTQLLGNL 781
>TAIR|locus:2060221 [details] [associations]
symbol:AT2G32550 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0007275 "multicellular
organismal development" evidence=ISS] Pfam:PF04078 EMBL:CP002685
GenomeReviews:CT485783_GR eggNOG:COG5209 KO:K12606
InterPro:IPR007216 PANTHER:PTHR12262 EMBL:AY954810 IPI:IPI00519021
RefSeq:NP_180814.2 UniGene:At.38054 ProteinModelPortal:Q58FZ9
SMR:Q58FZ9 PRIDE:Q58FZ9 DNASU:817816 EnsemblPlants:AT2G32550.1
GeneID:817816 KEGG:ath:AT2G32550 TAIR:At2g32550
HOGENOM:HOG000137501 InParanoid:Q58FZ9 OMA:LWESKNT PhylomeDB:Q58FZ9
ProtClustDB:CLSN2685062 Genevestigator:Q58FZ9 Uniprot:Q58FZ9
Length = 322
Score = 370 (135.3 bits), Expect = 4.6e-34, P = 4.6e-34
Identities = 91/268 (33%), Positives = 141/268 (52%)
Query: 44 VLDLSNPD--LRENALLELSKNKELFQDLAPFVWNSFGTIAALIQEIVSIYPVLSPP--- 98
V D+ P + + AL L+ ++ F+ L +W S T+ ++QE+ Y L+
Sbjct: 53 VCDIHKPKSYMSDFALHNLAYHRNDFEFLPSLLWESKNTVYIMLQEVFEAYRHLAGHISL 112
Query: 99 NLTPAQSN--RVCNALALLQCVASHPDTRMLFLNAHIPLYLYPFLNTTSKSRPFEYLRLT 156
L P N RV N L Q +A HPDT FL A +P Y YP ++T + E +RL
Sbjct: 113 RLFPHPLNPLRVYNVFLLFQSMACHPDTSRQFLRAKMPNYFYPLMDTGLIDKSDECMRLA 172
Query: 157 SLGVIGALVKV-DDTEVISFLLSTEIIPLCLRTMEMGSELSKTVATFIVQKILLDDVGLD 215
+LGVI ++K +D V +L+ + ++ C++ +E GS +K VA +I+ KI+ D GL
Sbjct: 173 ALGVIAHMLKASEDGAVNRYLMESGVVGFCVKPIEFGSTETKKVALYILDKIMSTDQGLY 232
Query: 216 YICTTAERFFAVGRVLGNMVAALAE--QPSSRLLKHIIRCYLRLSDNPRACDALRSCLPD 273
Y C A+RF+ + +L ++ L+ +P S L + CY++LS N RA + +R P
Sbjct: 233 YCCVLADRFYVIDELLKKVLFYLSNMVRPPSSLFSLVTGCYVKLSQNSRARNGIRRYTPF 292
Query: 274 MLRDATFSSCLREDPTTRRWLQQLLHNV 301
+L D TFS EDP QLL N+
Sbjct: 293 LLFDGTFSRLYAEDPVAANNRIQLLQNL 320
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.324 0.136 0.402 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 321 304 0.00098 115 3 11 22 0.47 33
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 27
No. of states in DFA: 608 (65 KB)
Total size of DFA: 203 KB (2114 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 25.07u 0.14s 25.21t Elapsed: 00:00:01
Total cpu time: 25.07u 0.14s 25.21t Elapsed: 00:00:01
Start: Mon May 20 17:54:09 2013 End: Mon May 20 17:54:10 2013