BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042013
(321 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FV2|A Chain A, Crystal Structure Analysis Of Human Rcd-1 Conserved Region
pdb|2FV2|B Chain B, Crystal Structure Analysis Of Human Rcd-1 Conserved Region
pdb|2FV2|C Chain C, Crystal Structure Analysis Of Human Rcd-1 Conserved Region
pdb|2FV2|D Chain D, Crystal Structure Analysis Of Human Rcd-1 Conserved Region
Length = 268
Score = 390 bits (1002), Expect = e-109, Method: Compositional matrix adjust.
Identities = 185/256 (72%), Positives = 218/256 (85%)
Query: 46 DLSNPDLRENALLELSKNKELFQDLAPFVWNSFGTIAALIQEIVSIYPVLSPPNLTPAQS 105
+LS+P+ RENALLELSK +E DLAP +W+SFGTIAAL+QEIV+IYP ++PP LT QS
Sbjct: 11 ELSSPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQS 70
Query: 106 NRVCNALALLQCVASHPDTRMLFLNAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALV 165
NRVCNALALLQCVASHP+TR FL AHIPL+LYPFL+T SK+RPFEYLRLTSLGVIGALV
Sbjct: 71 NRVCNALALLQCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALV 130
Query: 166 KVDDTEVISFLLSTEIIPLCLRTMEMGSELSKTVATFIVQKILLDDVGLDYICTTAERFF 225
K D+ EVI+FLL+TEIIPLCLR ME GSELSKTVATFI+QKILLDD GL YIC T ERF
Sbjct: 131 KTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKILLDDTGLAYICQTYERFS 190
Query: 226 AVGRVLGNMVAALAEQPSSRLLKHIIRCYLRLSDNPRACDALRSCLPDMLRDATFSSCLR 285
V +LG MV L+++PS+RLLKH++RCYLRLSDNPRA +ALR CLPD L+D TF+ L+
Sbjct: 191 HVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQCLPDQLKDTTFAQVLK 250
Query: 286 EDPTTRRWLQQLLHNV 301
+D TT+RWL QL+ N+
Sbjct: 251 DDTTTKRWLAQLVKNL 266
>pdb|2QS0|A Chain A, Quinolinate Synthase From Pyrococcus Furiosus
Length = 323
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 34/153 (22%), Positives = 69/153 (45%), Gaps = 20/153 (13%)
Query: 37 MASAEHLVLDLSNPDLRENALLELSKNKEL--FQDLAPFVWNSFG------------TIA 82
M E L ++ NA++ L+ N +L QD+A FV +S +
Sbjct: 21 MEKVEELKKEIERLKKERNAII-LAHNYQLPEVQDVADFVGDSLELARKATKVDADVIVF 79
Query: 83 ALIQEIVSIYPVLSPPNLTPAQSNRVCNALALLQCVASHPDTRMLFLNAHIPLYLYPFLN 142
A + + +L+P + + R A+A + V + + + NA + LY+ N
Sbjct: 80 AGVDFMAETAKILNPDKIVLIPNKRATCAMANMLKVKHILEAKKKYPNAPVVLYV----N 135
Query: 143 TTSKSRPFEYLRLTSLGVIGALVKVDDTEVISF 175
+T++++ + + +TS + + K+ D++VI F
Sbjct: 136 STAETKAYADVTVTSANAVDIIRKL-DSDVIIF 167
>pdb|2YJK|A Chain A, Structure Of Dps From Microbacterium Arborescens In The
High Iron Form
pdb|2YJK|B Chain B, Structure Of Dps From Microbacterium Arborescens In The
High Iron Form
pdb|2YJK|C Chain C, Structure Of Dps From Microbacterium Arborescens In The
High Iron Form
pdb|2YJK|D Chain D, Structure Of Dps From Microbacterium Arborescens In The
High Iron Form
pdb|2YJK|E Chain E, Structure Of Dps From Microbacterium Arborescens In The
High Iron Form
pdb|2YJK|F Chain F, Structure Of Dps From Microbacterium Arborescens In The
High Iron Form
pdb|2YJK|G Chain G, Structure Of Dps From Microbacterium Arborescens In The
High Iron Form
pdb|2YJK|H Chain H, Structure Of Dps From Microbacterium Arborescens In The
High Iron Form
pdb|2YJK|I Chain I, Structure Of Dps From Microbacterium Arborescens In The
High Iron Form
pdb|2YJK|J Chain J, Structure Of Dps From Microbacterium Arborescens In The
High Iron Form
pdb|2YJK|K Chain K, Structure Of Dps From Microbacterium Arborescens In The
High Iron Form
pdb|2YJK|L Chain L, Structure Of Dps From Microbacterium Arborescens In The
High Iron Form
pdb|2YJJ|A Chain A, Structure Of Dps From Microbacterium Arborescens In The
Low Iron Form
pdb|2YJJ|B Chain B, Structure Of Dps From Microbacterium Arborescens In The
Low Iron Form
pdb|2YJJ|C Chain C, Structure Of Dps From Microbacterium Arborescens In The
Low Iron Form
pdb|2YJJ|D Chain D, Structure Of Dps From Microbacterium Arborescens In The
Low Iron Form
pdb|2YJJ|E Chain E, Structure Of Dps From Microbacterium Arborescens In The
Low Iron Form
pdb|2YJJ|F Chain F, Structure Of Dps From Microbacterium Arborescens In The
Low Iron Form
pdb|2YJJ|G Chain G, Structure Of Dps From Microbacterium Arborescens In The
Low Iron Form
pdb|2YJJ|H Chain H, Structure Of Dps From Microbacterium Arborescens In The
Low Iron Form
pdb|2YJJ|I Chain I, Structure Of Dps From Microbacterium Arborescens In The
Low Iron Form
pdb|2YJJ|J Chain J, Structure Of Dps From Microbacterium Arborescens In The
Low Iron Form
pdb|2YJJ|K Chain K, Structure Of Dps From Microbacterium Arborescens In The
Low Iron Form
pdb|2YJJ|L Chain L, Structure Of Dps From Microbacterium Arborescens In The
Low Iron Form
Length = 161
Score = 27.7 bits (60), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 202 FIVQKILLDDV---GLDYICTTAERFFAVGRVLGNMVAALAEQPSS 244
FI LLD V DY T AER A+G + + V+ +AE+ S+
Sbjct: 51 FIAIHELLDSVVAHAQDYADTAAERIVALGLPIDSRVSTMAEKTST 96
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.136 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,090,364
Number of Sequences: 62578
Number of extensions: 285844
Number of successful extensions: 952
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 951
Number of HSP's gapped (non-prelim): 4
length of query: 321
length of database: 14,973,337
effective HSP length: 99
effective length of query: 222
effective length of database: 8,778,115
effective search space: 1948741530
effective search space used: 1948741530
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 51 (24.3 bits)