BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042013
(321 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6P819|RCD1_XENTR Cell differentiation protein RCD1 homolog OS=Xenopus tropicalis
GN=rqcd1 PE=2 SV=1
Length = 299
Score = 393 bits (1009), Expect = e-108, Method: Compositional matrix adjust.
Identities = 193/284 (67%), Positives = 229/284 (80%), Gaps = 3/284 (1%)
Query: 24 SAPAGAG-ANKDRKMASAEHLVLDLSNPDLRENALLELSKNKELFQDLAPFVWNSFGTIA 82
+AP A A DR+ + +LS+PD RENALLELSK +E DLAP +W+SFGTIA
Sbjct: 7 AAPVPAALAQVDRE--KIYQWINELSSPDTRENALLELSKKRESVPDLAPMLWHSFGTIA 64
Query: 83 ALIQEIVSIYPVLSPPNLTPAQSNRVCNALALLQCVASHPDTRMLFLNAHIPLYLYPFLN 142
AL+QEIV+IYP ++PP LT QSNRVCNALALLQCVASHP+TR FL AHIPL+LYPFL+
Sbjct: 65 ALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVASHPETRSAFLAAHIPLFLYPFLH 124
Query: 143 TTSKSRPFEYLRLTSLGVIGALVKVDDTEVISFLLSTEIIPLCLRTMEMGSELSKTVATF 202
T SK+RPFEYLRLTSLGVIGALVK D+ EVI+FLL+TEIIPLCLR ME GSELSKTVATF
Sbjct: 125 TVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATF 184
Query: 203 IVQKILLDDVGLDYICTTAERFFAVGRVLGNMVAALAEQPSSRLLKHIIRCYLRLSDNPR 262
I+QKILLDD GL YIC T ERF V +LG MV L+++PS+RLLKH++RCYLRLSDNPR
Sbjct: 185 ILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPR 244
Query: 263 ACDALRSCLPDMLRDATFSSCLREDPTTRRWLQQLLHNVGVNRV 306
A +ALR CLPD L+D TF+ L++D TT+RWL QL+ N+ +V
Sbjct: 245 AREALRQCLPDQLKDTTFAQVLKDDTTTKRWLAQLVKNLQEGQV 288
>sp|Q6IP65|RCD1_XENLA Cell differentiation protein RCD1 homolog OS=Xenopus laevis
GN=rqcd1 PE=2 SV=1
Length = 299
Score = 393 bits (1009), Expect = e-108, Method: Compositional matrix adjust.
Identities = 193/284 (67%), Positives = 229/284 (80%), Gaps = 3/284 (1%)
Query: 24 SAPAGAG-ANKDRKMASAEHLVLDLSNPDLRENALLELSKNKELFQDLAPFVWNSFGTIA 82
+AP A A DR+ + +LS+PD RENALLELSK +E DLAP +W+SFGTIA
Sbjct: 7 AAPVPAALAQVDRE--KIYQWINELSSPDTRENALLELSKKRESVPDLAPMLWHSFGTIA 64
Query: 83 ALIQEIVSIYPVLSPPNLTPAQSNRVCNALALLQCVASHPDTRMLFLNAHIPLYLYPFLN 142
AL+QEIV+IYP ++PP LT QSNRVCNALALLQCVASHP+TR FL AHIPL+LYPFL+
Sbjct: 65 ALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVASHPETRSAFLAAHIPLFLYPFLH 124
Query: 143 TTSKSRPFEYLRLTSLGVIGALVKVDDTEVISFLLSTEIIPLCLRTMEMGSELSKTVATF 202
T SK+RPFEYLRLTSLGVIGALVK D+ EVI+FLL+TEIIPLCLR ME GSELSKTVATF
Sbjct: 125 TVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATF 184
Query: 203 IVQKILLDDVGLDYICTTAERFFAVGRVLGNMVAALAEQPSSRLLKHIIRCYLRLSDNPR 262
I+QKILLDD GL YIC T ERF V +LG MV L+++PS+RLLKH++RCYLRLSDNPR
Sbjct: 185 ILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPR 244
Query: 263 ACDALRSCLPDMLRDATFSSCLREDPTTRRWLQQLLHNVGVNRV 306
A +ALR CLPD L+D TF+ L++D TT+RWL QL+ N+ +V
Sbjct: 245 AREALRQCLPDQLKDTTFAQVLKDDTTTKRWLAQLVKNLQEGQV 288
>sp|Q5PQL2|RCD1_RAT Cell differentiation protein RCD1 homolog OS=Rattus norvegicus
GN=Rqcd1 PE=1 SV=1
Length = 299
Score = 391 bits (1005), Expect = e-108, Method: Compositional matrix adjust.
Identities = 186/261 (71%), Positives = 220/261 (84%)
Query: 46 DLSNPDLRENALLELSKNKELFQDLAPFVWNSFGTIAALIQEIVSIYPVLSPPNLTPAQS 105
+LS+P+ RENALLELSK +E DLAP +W+SFGTIAAL+QEIV+IYP ++PP LT QS
Sbjct: 28 ELSSPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQS 87
Query: 106 NRVCNALALLQCVASHPDTRMLFLNAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALV 165
NRVCNALALLQCVASHP+TR FL AHIPL+LYPFL+T SK+RPFEYLRLTSLGVIGALV
Sbjct: 88 NRVCNALALLQCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALV 147
Query: 166 KVDDTEVISFLLSTEIIPLCLRTMEMGSELSKTVATFIVQKILLDDVGLDYICTTAERFF 225
K D+ EVI+FLL+TEIIPLCLR ME GSELSKTVATFI+QKILLDD GL YIC T ERF
Sbjct: 148 KTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKILLDDTGLAYICQTYERFS 207
Query: 226 AVGRVLGNMVAALAEQPSSRLLKHIIRCYLRLSDNPRACDALRSCLPDMLRDATFSSCLR 285
V +LG MV L+++PS+RLLKH++RCYLRLSDNPRA +ALR CLPD L+D TF+ L+
Sbjct: 208 HVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQCLPDQLKDTTFAQVLK 267
Query: 286 EDPTTRRWLQQLLHNVGVNRV 306
+D TT+RWL QL+ N+ +V
Sbjct: 268 DDTTTKRWLAQLVKNLQEGQV 288
>sp|Q9JKY0|RCD1_MOUSE Cell differentiation protein RCD1 homolog OS=Mus musculus GN=Rqcd1
PE=1 SV=1
Length = 299
Score = 391 bits (1005), Expect = e-108, Method: Compositional matrix adjust.
Identities = 186/261 (71%), Positives = 220/261 (84%)
Query: 46 DLSNPDLRENALLELSKNKELFQDLAPFVWNSFGTIAALIQEIVSIYPVLSPPNLTPAQS 105
+LS+P+ RENALLELSK +E DLAP +W+SFGTIAAL+QEIV+IYP ++PP LT QS
Sbjct: 28 ELSSPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQS 87
Query: 106 NRVCNALALLQCVASHPDTRMLFLNAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALV 165
NRVCNALALLQCVASHP+TR FL AHIPL+LYPFL+T SK+RPFEYLRLTSLGVIGALV
Sbjct: 88 NRVCNALALLQCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALV 147
Query: 166 KVDDTEVISFLLSTEIIPLCLRTMEMGSELSKTVATFIVQKILLDDVGLDYICTTAERFF 225
K D+ EVI+FLL+TEIIPLCLR ME GSELSKTVATFI+QKILLDD GL YIC T ERF
Sbjct: 148 KTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKILLDDTGLAYICQTYERFS 207
Query: 226 AVGRVLGNMVAALAEQPSSRLLKHIIRCYLRLSDNPRACDALRSCLPDMLRDATFSSCLR 285
V +LG MV L+++PS+RLLKH++RCYLRLSDNPRA +ALR CLPD L+D TF+ L+
Sbjct: 208 HVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQCLPDQLKDTTFAQVLK 267
Query: 286 EDPTTRRWLQQLLHNVGVNRV 306
+D TT+RWL QL+ N+ +V
Sbjct: 268 DDTTTKRWLAQLVKNLQEGQV 288
>sp|Q4R347|RCD1_MACFA Cell differentiation protein RCD1 homolog OS=Macaca fascicularis
GN=RQCD1 PE=2 SV=1
Length = 299
Score = 391 bits (1005), Expect = e-108, Method: Compositional matrix adjust.
Identities = 186/261 (71%), Positives = 220/261 (84%)
Query: 46 DLSNPDLRENALLELSKNKELFQDLAPFVWNSFGTIAALIQEIVSIYPVLSPPNLTPAQS 105
+LS+P+ RENALLELSK +E DLAP +W+SFGTIAAL+QEIV+IYP ++PP LT QS
Sbjct: 28 ELSSPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQS 87
Query: 106 NRVCNALALLQCVASHPDTRMLFLNAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALV 165
NRVCNALALLQCVASHP+TR FL AHIPL+LYPFL+T SK+RPFEYLRLTSLGVIGALV
Sbjct: 88 NRVCNALALLQCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALV 147
Query: 166 KVDDTEVISFLLSTEIIPLCLRTMEMGSELSKTVATFIVQKILLDDVGLDYICTTAERFF 225
K D+ EVI+FLL+TEIIPLCLR ME GSELSKTVATFI+QKILLDD GL YIC T ERF
Sbjct: 148 KTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKILLDDTGLAYICQTYERFS 207
Query: 226 AVGRVLGNMVAALAEQPSSRLLKHIIRCYLRLSDNPRACDALRSCLPDMLRDATFSSCLR 285
V +LG MV L+++PS+RLLKH++RCYLRLSDNPRA +ALR CLPD L+D TF+ L+
Sbjct: 208 HVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQCLPDQLKDTTFAQVLK 267
Query: 286 EDPTTRRWLQQLLHNVGVNRV 306
+D TT+RWL QL+ N+ +V
Sbjct: 268 DDTTTKRWLAQLVKNLQEGQV 288
>sp|A7MB47|RCD1_BOVIN Cell differentiation protein RCD1 homolog OS=Bos taurus GN=RQCD1
PE=2 SV=1
Length = 299
Score = 391 bits (1005), Expect = e-108, Method: Compositional matrix adjust.
Identities = 186/261 (71%), Positives = 220/261 (84%)
Query: 46 DLSNPDLRENALLELSKNKELFQDLAPFVWNSFGTIAALIQEIVSIYPVLSPPNLTPAQS 105
+LS+P+ RENALLELSK +E DLAP +W+SFGTIAAL+QEIV+IYP ++PP LT QS
Sbjct: 28 ELSSPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQS 87
Query: 106 NRVCNALALLQCVASHPDTRMLFLNAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALV 165
NRVCNALALLQCVASHP+TR FL AHIPL+LYPFL+T SK+RPFEYLRLTSLGVIGALV
Sbjct: 88 NRVCNALALLQCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALV 147
Query: 166 KVDDTEVISFLLSTEIIPLCLRTMEMGSELSKTVATFIVQKILLDDVGLDYICTTAERFF 225
K D+ EVI+FLL+TEIIPLCLR ME GSELSKTVATFI+QKILLDD GL YIC T ERF
Sbjct: 148 KTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKILLDDTGLAYICQTYERFS 207
Query: 226 AVGRVLGNMVAALAEQPSSRLLKHIIRCYLRLSDNPRACDALRSCLPDMLRDATFSSCLR 285
V +LG MV L+++PS+RLLKH++RCYLRLSDNPRA +ALR CLPD L+D TF+ L+
Sbjct: 208 HVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQCLPDQLKDTTFAQVLK 267
Query: 286 EDPTTRRWLQQLLHNVGVNRV 306
+D TT+RWL QL+ N+ +V
Sbjct: 268 DDTTTKRWLAQLVKNLQEGQV 288
>sp|Q5R6Z6|RCD1_PONAB Cell differentiation protein RCD1 homolog OS=Pongo abelii GN=RQCD1
PE=2 SV=2
Length = 299
Score = 391 bits (1004), Expect = e-108, Method: Compositional matrix adjust.
Identities = 186/261 (71%), Positives = 220/261 (84%)
Query: 46 DLSNPDLRENALLELSKNKELFQDLAPFVWNSFGTIAALIQEIVSIYPVLSPPNLTPAQS 105
+LS+P+ RENALLELSK +E DLAP +W+SFGTIAAL+QEIV+IYP ++PP LT QS
Sbjct: 28 ELSSPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQS 87
Query: 106 NRVCNALALLQCVASHPDTRMLFLNAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALV 165
NRVCNALALLQCVASHP+TR FL AHIPL+LYPFL+T SK+RPFEYLRLTSLGVIGALV
Sbjct: 88 NRVCNALALLQCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALV 147
Query: 166 KVDDTEVISFLLSTEIIPLCLRTMEMGSELSKTVATFIVQKILLDDVGLDYICTTAERFF 225
K D+ EVI+FLL+TEIIPLCLR ME GSELSKTVATFI+QKILLDD GL YIC T ERF
Sbjct: 148 KTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKILLDDTGLAYICQTYERFS 207
Query: 226 AVGRVLGNMVAALAEQPSSRLLKHIIRCYLRLSDNPRACDALRSCLPDMLRDATFSSCLR 285
V +LG MV L+++PS+RLLKH++RCYLRLSDNPRA +ALR CLPD L+D TF+ L+
Sbjct: 208 HVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQCLPDQLKDTTFAQVLK 267
Query: 286 EDPTTRRWLQQLLHNVGVNRV 306
+D TT+RWL QL+ N+ +V
Sbjct: 268 DDTTTKRWLAQLVKNLQEGQV 288
>sp|Q92600|RCD1_HUMAN Cell differentiation protein RCD1 homolog OS=Homo sapiens GN=RQCD1
PE=1 SV=1
Length = 299
Score = 391 bits (1004), Expect = e-108, Method: Compositional matrix adjust.
Identities = 186/261 (71%), Positives = 220/261 (84%)
Query: 46 DLSNPDLRENALLELSKNKELFQDLAPFVWNSFGTIAALIQEIVSIYPVLSPPNLTPAQS 105
+LS+P+ RENALLELSK +E DLAP +W+SFGTIAAL+QEIV+IYP ++PP LT QS
Sbjct: 28 ELSSPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQS 87
Query: 106 NRVCNALALLQCVASHPDTRMLFLNAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALV 165
NRVCNALALLQCVASHP+TR FL AHIPL+LYPFL+T SK+RPFEYLRLTSLGVIGALV
Sbjct: 88 NRVCNALALLQCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALV 147
Query: 166 KVDDTEVISFLLSTEIIPLCLRTMEMGSELSKTVATFIVQKILLDDVGLDYICTTAERFF 225
K D+ EVI+FLL+TEIIPLCLR ME GSELSKTVATFI+QKILLDD GL YIC T ERF
Sbjct: 148 KTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKILLDDTGLAYICQTYERFS 207
Query: 226 AVGRVLGNMVAALAEQPSSRLLKHIIRCYLRLSDNPRACDALRSCLPDMLRDATFSSCLR 285
V +LG MV L+++PS+RLLKH++RCYLRLSDNPRA +ALR CLPD L+D TF+ L+
Sbjct: 208 HVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQCLPDQLKDTTFAQVLK 267
Query: 286 EDPTTRRWLQQLLHNVGVNRV 306
+D TT+RWL QL+ N+ +V
Sbjct: 268 DDTTTKRWLAQLVKNLQEGQV 288
>sp|Q6NWL4|RCD1_DANRE Cell differentiation protein RCD1 homolog OS=Danio rerio GN=rqcd1
PE=2 SV=1
Length = 298
Score = 383 bits (984), Expect = e-106, Method: Compositional matrix adjust.
Identities = 183/261 (70%), Positives = 217/261 (83%)
Query: 46 DLSNPDLRENALLELSKNKELFQDLAPFVWNSFGTIAALIQEIVSIYPVLSPPNLTPAQS 105
+LS+P+ RENALLELSK +E DLAP +W+S GTIAAL+QEIV+IYP ++PP LT QS
Sbjct: 27 ELSSPETRENALLELSKKRESVTDLAPMLWHSCGTIAALLQEIVNIYPSINPPTLTAHQS 86
Query: 106 NRVCNALALLQCVASHPDTRMLFLNAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALV 165
NRVCNALALLQCVASH +TR FL AHIPL+LYPFL+T SK+RPFEYLRLTSLGVIGALV
Sbjct: 87 NRVCNALALLQCVASHVETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALV 146
Query: 166 KVDDTEVISFLLSTEIIPLCLRTMEMGSELSKTVATFIVQKILLDDVGLDYICTTAERFF 225
K D+ EVI+FLL+TEIIPLCLR ME GSELSKTVATFI+QKILLDD GL YIC T ERF
Sbjct: 147 KTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKILLDDTGLAYICQTYERFS 206
Query: 226 AVGRVLGNMVAALAEQPSSRLLKHIIRCYLRLSDNPRACDALRSCLPDMLRDATFSSCLR 285
V +LG MV L+++PS+RLLKH++RCYLRLSDN RA +ALR CLPD L+D TF+ L+
Sbjct: 207 HVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNSRAREALRQCLPDQLKDTTFAQVLK 266
Query: 286 EDPTTRRWLQQLLHNVGVNRV 306
+D TT+RWL QL+ N+ +V
Sbjct: 267 DDSTTKRWLAQLVKNLQEGQV 287
>sp|Q92368|RCD1_SCHPO Cell differentiation protein rcd1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=rcd1 PE=3 SV=1
Length = 283
Score = 356 bits (914), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 174/259 (67%), Positives = 209/259 (80%)
Query: 44 VLDLSNPDLRENALLELSKNKELFQDLAPFVWNSFGTIAALIQEIVSIYPVLSPPNLTPA 103
++ L + RE AL+ELS+ +E ++DLA +W+S+G + AL+QEI+S+YP+L+PP LT
Sbjct: 18 IIQLVSGTSREQALVELSRKREQYEDLALILWHSYGVMTALLQEIISVYPLLNPPTLTGP 77
Query: 104 QSNRVCNALALLQCVASHPDTRMLFLNAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGA 163
SNRVCNALALLQC+ASHP+TR+ FLNAHI L+LYPFLNT SKS+PFEYLRLTSLGVIGA
Sbjct: 78 TSNRVCNALALLQCIASHPETRIHFLNAHITLFLYPFLNTLSKSKPFEYLRLTSLGVIGA 137
Query: 164 LVKVDDTEVISFLLSTEIIPLCLRTMEMGSELSKTVATFIVQKILLDDVGLDYICTTAER 223
LVK D EVI+FLLSTEIIPLCLR ME GSELSKTVA FIVQK L DDVGL YIC T ER
Sbjct: 138 LVKNDSPEVINFLLSTEIIPLCLRIMENGSELSKTVAIFIVQKFLCDDVGLQYICQTYER 197
Query: 224 FFAVGRVLGNMVAALAEQPSSRLLKHIIRCYLRLSDNPRACDALRSCLPDMLRDATFSSC 283
F+AV VL NMV L + + RLLKH+IRCYLRLSDNPRA +ALR CLP+ LRDATF+
Sbjct: 198 FYAVASVLNNMVMQLVDSFAFRLLKHVIRCYLRLSDNPRAREALRHCLPEPLRDATFAQV 257
Query: 284 LREDPTTRRWLQQLLHNVG 302
L++D T++ L QLL N+
Sbjct: 258 LKDDHNTKKCLAQLLINLS 276
>sp|P53829|CAF40_YEAST Protein CAF40 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=CAF40 PE=1 SV=1
Length = 373
Score = 315 bits (807), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 163/281 (58%), Positives = 200/281 (71%), Gaps = 1/281 (0%)
Query: 19 SASSPSAPAGAGANKDRKMASAEHLVLDLSNPDLRENALLELSKNKELFQDLAPFVWNSF 78
+ ++P+ GA + H + L+ +E ALLEL + +E F DLA +W+SF
Sbjct: 85 TRNNPNMVNNRGAVHALDDPNVYHWICQLTYGPQKEQALLELGRKREQFDDLAVVLWSSF 144
Query: 79 GTIAALIQEIVSIYPVLSPPNLTPAQSNRVCNALALLQCVASHPDTRMLFLNAHIPLYLY 138
G + +L+ EI+S+YP+L P L+ SNRVCNAL LLQCVASHP+T+ LFL AHIPL+L+
Sbjct: 145 GVMTSLLNEIISVYPMLQPQMLSNNLSNRVCNALVLLQCVASHPETKHLFLQAHIPLFLF 204
Query: 139 PFLNTTSKSRPFEYLRLTSLGVIGALVKVDDTEVISFLLSTEIIPLCLRTMEMGSELSKT 198
PFLNTTS+ R FEYLRLTSLGVIGALVK D +VI+FLL T+I+PLCLR ME SELSKT
Sbjct: 205 PFLNTTSRQRTFEYLRLTSLGVIGALVKNDSQDVITFLLRTDIVPLCLRIMESSSELSKT 264
Query: 199 VATFIVQKILLDDVGLDYICTTAERFFAVGRVLGNMVAAL-AEQPSSRLLKHIIRCYLRL 257
VA FI+QKILLDDVGL YIC T ERF+AV VL +MV L P RLLKHIIRCYLRL
Sbjct: 265 VAIFILQKILLDDVGLQYICATLERFYAVTNVLKDMVEHLTVSTPPGRLLKHIIRCYLRL 324
Query: 258 SDNPRACDALRSCLPDMLRDATFSSCLREDPTTRRWLQQLL 298
SD+ A L+ LP LRD TF+ LR+D ++R L QLL
Sbjct: 325 SDDLEARRLLKIVLPAKLRDNTFTEVLRDDVGSKRCLAQLL 365
>sp|Q9ZJG6|MNME_HELPJ tRNA modification GTPase MnmE OS=Helicobacter pylori (strain J99)
GN=mnmE PE=3 SV=1
Length = 461
Score = 31.6 bits (70), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 38/82 (46%), Gaps = 8/82 (9%)
Query: 74 VWNSFGTIAALIQEIVSIYPVLSPPN---LTP-AQSNRVCNALALLQCVASHPDTRMLFL 129
NS + L Q+I +P L N LT AQ+ + NA+ LQ SH DT LF
Sbjct: 368 TLNSKACLKDLSQKISEFFPKLDTQNKLLLTSLAQTTALENAITELQNAKSHLDTLELF- 426
Query: 130 NAHIPLYLYPFLNTTSKSRPFE 151
+ HI L N +RP+E
Sbjct: 427 SYHI---LSAIENLNLLTRPYE 445
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.135 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 114,937,007
Number of Sequences: 539616
Number of extensions: 4515057
Number of successful extensions: 12402
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 12388
Number of HSP's gapped (non-prelim): 27
length of query: 321
length of database: 191,569,459
effective HSP length: 117
effective length of query: 204
effective length of database: 128,434,387
effective search space: 26200614948
effective search space used: 26200614948
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)