Query 042013
Match_columns 321
No_of_seqs 120 out of 165
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 22:41:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042013.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042013hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2fv2_A RCD1 required for cell 100.0 8E-128 3E-132 899.0 23.7 267 36-302 1-267 (268)
2 4hxt_A De novo protein OR329; 98.1 0.00045 1.6E-08 58.2 18.2 234 40-304 4-242 (252)
3 4db8_A Armadillo-repeat protei 97.7 0.002 6.7E-08 55.1 16.1 223 48-302 24-250 (252)
4 4db6_A Armadillo repeat protei 97.6 0.0028 9.7E-08 52.7 15.6 186 48-260 24-210 (210)
5 4db6_A Armadillo repeat protei 97.4 0.0043 1.5E-07 51.6 14.5 175 109-302 30-208 (210)
6 1xqr_A HSPBP1 protein; armadil 97.3 0.011 3.9E-07 54.8 17.5 241 34-303 24-287 (296)
7 4hxt_A De novo protein OR329; 97.2 0.016 5.6E-07 48.6 15.4 176 109-303 20-199 (252)
8 4db8_A Armadillo-repeat protei 97.2 0.017 5.7E-07 49.2 15.4 169 116-303 38-209 (252)
9 4b8j_A Importin subunit alpha- 96.9 0.11 3.8E-06 49.6 19.9 234 38-303 74-315 (528)
10 4b8j_A Importin subunit alpha- 96.2 0.078 2.7E-06 50.6 13.7 209 49-280 299-516 (528)
11 2z6h_A Catenin beta-1, beta-ca 96.1 0.25 8.5E-06 49.0 17.3 195 49-269 27-222 (644)
12 1wa5_B Importin alpha subunit; 95.9 0.58 2E-05 44.8 18.3 137 108-259 274-412 (530)
13 2jdq_A Importin alpha-1 subuni 95.8 0.8 2.7E-05 41.8 18.3 222 49-302 120-346 (450)
14 1jdh_A Beta-catenin; beta-cate 95.7 1.4 4.8E-05 41.2 20.3 231 49-301 279-528 (529)
15 1wa5_B Importin alpha subunit; 95.5 1.4 4.9E-05 42.0 19.6 222 49-302 186-411 (530)
16 1jdh_A Beta-catenin; beta-cate 95.3 1.3 4.6E-05 41.3 18.2 203 40-268 19-224 (529)
17 2jdq_A Importin alpha-1 subuni 95.1 0.19 6.6E-06 45.9 11.5 146 49-212 247-393 (450)
18 3ul1_B Importin subunit alpha- 94.4 1.4 4.8E-05 42.7 16.3 181 49-257 245-428 (510)
19 3tpo_A Importin subunit alpha- 93.8 1.9 6.4E-05 41.8 15.8 181 49-257 264-447 (529)
20 2z6h_A Catenin beta-1, beta-ca 93.5 0.85 2.9E-05 45.2 13.1 182 49-260 111-293 (644)
21 1xm9_A Plakophilin 1; armadill 93.2 0.88 3E-05 43.6 12.2 149 107-270 18-183 (457)
22 3tpo_A Importin subunit alpha- 93.0 4.4 0.00015 39.1 17.0 229 49-302 175-405 (529)
23 3nmw_A APC variant protein; AR 93.0 1.1 3.8E-05 42.4 12.4 161 100-268 41-210 (354)
24 1xqr_A HSPBP1 protein; armadil 92.7 2.2 7.7E-05 39.3 13.7 145 49-211 95-240 (296)
25 2z6g_A B-catenin; FULL-length, 92.5 5.8 0.0002 40.8 17.9 144 110-267 212-356 (780)
26 3ul1_B Importin subunit alpha- 91.4 5.5 0.00019 38.5 15.4 236 42-302 147-386 (510)
27 3nmz_A APC variant protein; pr 90.6 1.3 4.3E-05 43.7 10.2 156 105-268 162-326 (458)
28 2z6g_A B-catenin; FULL-length, 89.4 9.7 0.00033 39.2 16.0 143 109-262 507-666 (780)
29 3nmw_A APC variant protein; AR 89.3 2.6 8.7E-05 39.8 10.8 144 49-210 184-335 (354)
30 1xm9_A Plakophilin 1; armadill 86.1 5.3 0.00018 38.1 11.0 156 42-211 290-451 (457)
31 3tt9_A Plakophilin-2; cell adh 85.5 5.9 0.0002 35.6 10.3 150 106-270 25-192 (233)
32 4gmo_A Putative uncharacterize 85.0 12 0.0004 38.0 13.5 156 106-270 50-226 (684)
33 3now_A UNC-45 protein, SD10334 84.0 47 0.0016 35.2 18.9 225 49-303 392-652 (810)
34 3nmz_A APC variant protein; pr 83.7 5.5 0.00019 39.1 10.0 149 49-216 300-456 (458)
35 1w63_A Adapter-related protein 81.9 43 0.0015 33.3 17.0 233 39-303 108-379 (618)
36 1qgr_A Protein (importin beta 79.7 15 0.00051 36.5 11.6 102 150-259 143-246 (876)
37 4fdd_A Transportin-1; heat rep 79.3 37 0.0013 34.4 14.6 189 34-259 9-203 (852)
38 1ibr_B P95, importin beta-1 su 78.9 37 0.0013 30.6 14.9 217 39-302 2-245 (462)
39 3l6x_A Catenin delta-1; cateni 78.4 30 0.001 35.3 13.6 176 71-270 41-233 (584)
40 1b3u_A Protein (protein phosph 73.9 43 0.0015 31.3 12.4 165 36-209 8-193 (588)
41 4fdd_A Transportin-1; heat rep 72.7 56 0.0019 33.1 13.8 106 149-266 186-292 (852)
42 2bpt_A Importin beta-1 subunit 72.2 13 0.00046 36.8 8.9 113 138-259 136-253 (861)
43 4gmo_A Putative uncharacterize 70.3 16 0.00054 37.1 9.2 158 49-210 89-259 (684)
44 1ibr_B P95, importin beta-1 su 70.1 9.6 0.00033 34.5 6.8 228 49-301 50-286 (462)
45 3now_A UNC-45 protein, SD10334 68.3 1.3E+02 0.0043 32.0 16.8 223 49-303 508-737 (810)
46 3opb_A SWI5-dependent HO expre 64.4 66 0.0022 34.2 12.6 148 52-208 517-682 (778)
47 3grl_A General vesicular trans 59.0 88 0.003 32.7 12.2 178 29-229 15-218 (651)
48 1wa5_C Importin alpha RE-expor 58.9 1.5E+02 0.005 30.8 14.0 141 36-210 3-153 (960)
49 2vgl_A Adaptor protein complex 56.5 1.6E+02 0.0056 29.3 18.2 134 40-177 113-281 (621)
50 1u6g_C TIP120 protein, CAND1; 52.9 65 0.0022 34.1 10.3 142 49-209 61-204 (1230)
51 3tt9_A Plakophilin-2; cell adh 51.2 1.2E+02 0.004 27.1 10.3 143 152-303 25-180 (233)
52 3opb_A SWI5-dependent HO expre 51.0 1.2E+02 0.004 32.3 11.8 162 39-219 296-496 (778)
53 2qk2_A LP04448P; mini spindles 50.1 1.1E+02 0.0039 25.6 11.4 152 150-304 70-237 (242)
54 1qgr_A Protein (importin beta 46.6 14 0.00046 36.8 3.7 69 139-208 799-870 (876)
55 1b3u_A Protein (protein phosph 46.2 98 0.0033 28.8 9.4 29 180-208 441-469 (588)
56 2vgl_B AP-2 complex subunit be 44.9 1.9E+02 0.0065 28.2 11.7 30 147-177 329-359 (591)
57 3l6x_A Catenin delta-1; cateni 36.0 2.1E+02 0.0072 29.0 10.6 109 151-268 62-172 (584)
58 3dev_A SH1221; alpha-beta prot 29.1 84 0.0029 29.3 5.9 54 179-232 127-180 (320)
59 1wa5_C Importin alpha RE-expor 27.7 4.3E+02 0.015 27.3 11.5 98 106-208 307-433 (960)
60 1u6g_C TIP120 protein, CAND1; 25.9 4.7E+02 0.016 27.6 11.5 74 132-210 1003-1095(1230)
61 3bwt_A Protein PUF4; pumilio, 24.8 87 0.003 28.3 5.1 8 201-208 134-141 (333)
62 2vgl_B AP-2 complex subunit be 24.6 4.9E+02 0.017 25.3 12.2 101 41-168 89-191 (591)
63 2bpt_A Importin beta-1 subunit 23.6 5.3E+02 0.018 25.3 11.8 62 149-210 193-254 (861)
64 2qk1_A Protein STU2; STU2P, XM 22.2 86 0.0029 27.5 4.4 57 152-208 161-219 (249)
No 1
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=100.00 E-value=7.8e-128 Score=899.04 Aligned_cols=267 Identities=69% Similarity=1.124 Sum_probs=264.7
Q ss_pred hhhHHHHHHHhcCCcchHHHHHHHHhhhhhcccchhhHHhhhhchHHHHHHHHHhhcCCCCCCCCChhhhhHHHHHHHHH
Q 042013 36 KMASAEHLVLDLSNPDLRENALLELSKNKELFQDLAPFVWNSFGTIAALIQEIVSIYPVLSPPNLTPAQSNRVCNALALL 115 (321)
Q Consensus 36 ~~~~v~q~I~~L~~p~~Re~AL~eLsk~re~~~~La~~LW~S~Gtia~LLQEIisiYp~Lspp~Lt~~~SnRVCnaLaLL 115 (321)
|+++++|||.||++|++||+||+|||||||+||||||+||||||||++|||||+++||+++||+||+++|||||||||||
T Consensus 1 ~~~~i~qli~~L~~p~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLl 80 (268)
T 2fv2_A 1 DREKIYQWINELSSPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALL 80 (268)
T ss_dssp -CHHHHHHHHHTSSTTTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHhcCchhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHH
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCchhhhhhhhhccccccccccccccCCCCcchhhhhhhhhhhhhcccCchHHHHHHhhhchhhhhhhhccccchh
Q 042013 116 QCVASHPDTRMLFLNAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKVDDTEVISFLLSTEIIPLCLRTMEMGSEL 195 (321)
Q Consensus 116 Q~vAshpetR~~FL~a~iplyLyPfL~ttsk~r~~E~LRLtSLGVIgaLvK~dd~evI~fLL~tEiiPLCLriME~Gsel 195 (321)
||||||||||++||+||||+||||||||++|+|||||||||||||||||||+||+|||+||++|||||+|||+||+|||+
T Consensus 81 QcvAshpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~Gsel 160 (268)
T 2fv2_A 81 QCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSEL 160 (268)
T ss_dssp HHHHHCTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHH
T ss_pred HHHHcCcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhccccchhhhhhhhhHHHHHHHHHHHHHHHHhhCCChhhHHHHHHHHHHhhCChhhHHHHHhcCCccc
Q 042013 196 SKTVATFIVQKILLDDVGLDYICTTAERFFAVGRVLGNMVAALAEQPSSRLLKHIIRCYLRLSDNPRACDALRSCLPDML 275 (321)
Q Consensus 196 SKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiirCYlRLs~n~rar~aL~~~LP~~L 275 (321)
||||||||+||||+||+||+|+|+|+|||+||++||++||.+++++||+||||||||||+|||||||||++|++|||++|
T Consensus 161 SKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar~aL~~~LP~~L 240 (268)
T 2fv2_A 161 SKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQCLPDQL 240 (268)
T ss_dssp HHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHHHHHHHHSCGGG
T ss_pred HHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHhCcHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhhcCCHHHHHHHHHHHHHhC
Q 042013 276 RDATFSSCLREDPTTRRWLQQLLHNVG 302 (321)
Q Consensus 276 rd~~f~~~l~~D~~~k~~l~qLl~nl~ 302 (321)
||++|++++++|+.+|+|++||+.|++
T Consensus 241 rd~tf~~~l~~D~~~k~~l~qLl~n~~ 267 (268)
T 2fv2_A 241 KDTTFAQVLKDDTTTKRWLAQLVKNLQ 267 (268)
T ss_dssp TSSTTHHHHTSCHHHHHHHHHHHHHSC
T ss_pred hChHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 999999999999999999999999986
No 2
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=98.06 E-value=0.00045 Score=58.21 Aligned_cols=234 Identities=14% Similarity=0.104 Sum_probs=160.0
Q ss_pred HHHHHHhcC--CcchHHHHHHHHhhhhhcccchhhHHhhhhchHHHHHHHHHhhcCCCCCCCCChhhhhHHHHHHHHHHH
Q 042013 40 AEHLVLDLS--NPDLRENALLELSKNKELFQDLAPFVWNSFGTIAALIQEIVSIYPVLSPPNLTPAQSNRVCNALALLQC 117 (321)
Q Consensus 40 v~q~I~~L~--~p~~Re~AL~eLsk~re~~~~La~~LW~S~Gtia~LLQEIisiYp~Lspp~Lt~~~SnRVCnaLaLLQ~ 117 (321)
+-.++.-|. +++.|..|+..|..--...++-...+-.. |.+..|++=+-+ ++ ..-..+++..|..
T Consensus 4 i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-g~i~~L~~ll~~-------~~-----~~v~~~a~~~L~~ 70 (252)
T 4hxt_A 4 VEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDA-GGVEVLVKLLTS-------TD-----SEVQKEAARALAN 70 (252)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHT-THHHHHHHHTTC-------SC-----HHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHC-CCHHHHHHHHhC-------CC-----HHHHHHHHHHHHH
Confidence 444555554 55678888888776544444344444433 777777654422 11 2223456666777
Q ss_pred HhcC-chhhhhhhhhccccccccccccccCCCCcchhhhhhhhhhhhhcccCchHHHHHHhhhchhhhhhhhccccchhh
Q 042013 118 VASH-PDTRMLFLNAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKVDDTEVISFLLSTEIIPLCLRTMEMGSELS 196 (321)
Q Consensus 118 vAsh-petR~~FL~a~iplyLyPfL~ttsk~r~~E~LRLtSLGVIgaLvK~dd~evI~fLL~tEiiPLCLriME~GselS 196 (321)
++.+ ++.|..+++....-.|..+|+. +.+.+|-..+++++.|... +++....+.....+|..++.++.+++-.
T Consensus 71 l~~~~~~~~~~~~~~~~i~~l~~ll~~-----~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~i~~L~~~l~~~~~~~ 144 (252)
T 4hxt_A 71 IASGPDEAIKAIVDAGGVEVLVKLLTS-----TDSEVQKEAARALANIASG-PDEAIKAIVDAGGVEVLVKLLTSTDSEV 144 (252)
T ss_dssp HTTSCHHHHHHHHHTTHHHHHHHHTTC-----SSHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTHHHHHHHHTTCSCHHH
T ss_pred HHcCChHHHHHHHHCCCHHHHHHHHcC-----CCHHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHcCCCHHH
Confidence 7877 9999999999877777777763 3478999999999999864 5667777888999999999999999999
Q ss_pred HHHHHHHHHHHhccccchhhhhhhhhHHHHHHHHHHHHHHHHhhCCChhhHHHHHHHHHHhhC-ChhhHHHHHhcCCccc
Q 042013 197 KTVATFIVQKILLDDVGLDYICTTAERFFAVGRVLGNMVAALAEQPSSRLLKHIIRCYLRLSD-NPRACDALRSCLPDML 275 (321)
Q Consensus 197 KtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiirCYlRLs~-n~rar~aL~~~LP~~L 275 (321)
+.-|...+..+..++.+..- .+.. ..++..++.- ...+++.+-+.+.++-..|+. ++..+..+.+. ..
T Consensus 145 ~~~a~~~L~~l~~~~~~~~~------~~~~-~~~i~~L~~l-l~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~---~~ 213 (252)
T 4hxt_A 145 QKEAARALANIASGPDEAIK------AIVD-AGGVEVLVKL-LTSTDSEVQKEAARALANIASGPTSAIKAIVDA---GG 213 (252)
T ss_dssp HHHHHHHHHHHTTSCHHHHH------HHHH-TTHHHHHHHH-TTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHT---TH
T ss_pred HHHHHHHHHHHHcCCHHHHH------HHHH-CcCHHHHHHH-HCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHC---CC
Confidence 99999999998775443211 1111 2244444443 347889999999999999997 67766666541 11
Q ss_pred chhhhhhhh-cCCHHHHHHHHHHHHHhCCC
Q 042013 276 RDATFSSCL-REDPTTRRWLQQLLHNVGVN 304 (321)
Q Consensus 276 rd~~f~~~l-~~D~~~k~~l~qLl~nl~~~ 304 (321)
-. .+..++ .+|+.+++.-...+.|+...
T Consensus 214 i~-~L~~ll~~~~~~v~~~a~~~L~~l~~~ 242 (252)
T 4hxt_A 214 VE-VLQKLLTSTDSEVQKEAQRALENIKSG 242 (252)
T ss_dssp HH-HHHHGGGCSCHHHHHHHHHHHHHHHHT
T ss_pred HH-HHHHHHCCCcHHHHHHHHHHHHHHHcC
Confidence 11 122223 46889999999999999854
No 3
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=97.69 E-value=0.002 Score=55.07 Aligned_cols=223 Identities=16% Similarity=0.187 Sum_probs=149.6
Q ss_pred CCcchHHHHHHHHhhhhhcccchhhHHhhhhchHHHHHHHHHhhcCCCCCCCCChhhhhHHHHHHHHHHHHhc-Cchhhh
Q 042013 48 SNPDLRENALLELSKNKELFQDLAPFVWNSFGTIAALIQEIVSIYPVLSPPNLTPAQSNRVCNALALLQCVAS-HPDTRM 126 (321)
Q Consensus 48 ~~p~~Re~AL~eLsk~re~~~~La~~LW~S~Gtia~LLQEIisiYp~Lspp~Lt~~~SnRVCnaLaLLQ~vAs-hpetR~ 126 (321)
-+++.|..|+..|.+.-...++-...+..+ |.+..|++=+- .++ ..-...++..|..++. +++.+.
T Consensus 24 ~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~-g~i~~L~~lL~-------~~~-----~~v~~~a~~~L~~l~~~~~~~~~ 90 (252)
T 4db8_A 24 DDMQEQLSATRKFSQILSDGNEQIQAVIDA-GALPALVQLLS-------SPN-----EQILQEALWALSNIASGGNEQIQ 90 (252)
T ss_dssp SCSSHHHHHHHHHHHHHHHHHHHHHHHHHT-THHHHHHHGGG-------CSC-----HHHHHHHHHHHHHHTTSCHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCchHHHHHHc-CcHHHHHHHHc-------CCC-----HHHHHHHHHHHHHHhcCCHHHHH
Confidence 377889999998865322222222334444 77777765432 221 2334467777778886 789999
Q ss_pred hhhhhccccccccccccccCCCCcchhhhhhhhhhhhhcccCchHHHHHHhhhchhhhhhhhccccchhhHHHHHHHHHH
Q 042013 127 LFLNAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKVDDTEVISFLLSTEIIPLCLRTMEMGSELSKTVATFIVQK 206 (321)
Q Consensus 127 ~FL~a~iplyLyPfL~ttsk~r~~E~LRLtSLGVIgaLvK~dd~evI~fLL~tEiiPLCLriME~GselSKtvAtfIlqK 206 (321)
.++++...-.|..+|+. +.+.+|-.++++++.|...++ ..+..+.....+|..++.++.++.-.+.-|...+..
T Consensus 91 ~i~~~g~i~~L~~lL~~-----~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~ 164 (252)
T 4db8_A 91 AVIDAGALPALVQLLSS-----PNEQILQEALWALSNIASGGN-EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSN 164 (252)
T ss_dssp HHHHTTHHHHHHHGGGC-----SCHHHHHHHHHHHHHHTTSCH-HHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHcC-----CCHHHHHHHHHHHHHhhcCCc-hHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 99999877777777764 347899999999999986543 334677889999999999999999899999999999
Q ss_pred Hhccccc-hhhhhhhhhHHHHHHHHHHHHHHHHhhCCChhhHHHHHHHHHHhh-CChhhHHHHHhcCCcccchhhhhhhh
Q 042013 207 ILLDDVG-LDYICTTAERFFAVGRVLGNMVAALAEQPSSRLLKHIIRCYLRLS-DNPRACDALRSCLPDMLRDATFSSCL 284 (321)
Q Consensus 207 IL~dd~G-L~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiirCYlRLs-~n~rar~aL~~~LP~~Lrd~~f~~~l 284 (321)
+..++.. ...+.. ..++..++. +...+++.+.+.+.++-..|+ .++..+..+.+. ..-. .+..++
T Consensus 165 l~~~~~~~~~~~~~--------~~~i~~L~~-ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~---g~i~-~L~~ll 231 (252)
T 4db8_A 165 IASGGNEQIQAVID--------AGALPALVQ-LLSSPNEQILQEALWALSNIASGGNEQKQAVKEA---GALE-KLEQLQ 231 (252)
T ss_dssp HTTSCHHHHHHHHH--------TTCHHHHHH-GGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHT---THHH-HHHTTT
T ss_pred HHcCChHHHHHHHH--------CCCHHHHHH-HHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHC---CcHH-HHHHHh
Confidence 8765422 111111 223444443 445679999999999999998 567767666543 0111 111222
Q ss_pred -cCCHHHHHHHHHHHHHhC
Q 042013 285 -REDPTTRRWLQQLLHNVG 302 (321)
Q Consensus 285 -~~D~~~k~~l~qLl~nl~ 302 (321)
.+|+.+++.-...+.|+.
T Consensus 232 ~~~~~~v~~~A~~~L~~l~ 250 (252)
T 4db8_A 232 SHENEKIQKEAQEALEKLQ 250 (252)
T ss_dssp TCSSSHHHHTHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHHHHHh
Confidence 357788887777777764
No 4
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=97.61 E-value=0.0028 Score=52.71 Aligned_cols=186 Identities=16% Similarity=0.158 Sum_probs=129.8
Q ss_pred CCcchHHHHHHHHhhhhhcccchhhHHhhhhchHHHHHHHHHhhcCCCCCCCCChhhhhHHHHHHHHHHHHh-cCchhhh
Q 042013 48 SNPDLRENALLELSKNKELFQDLAPFVWNSFGTIAALIQEIVSIYPVLSPPNLTPAQSNRVCNALALLQCVA-SHPDTRM 126 (321)
Q Consensus 48 ~~p~~Re~AL~eLsk~re~~~~La~~LW~S~Gtia~LLQEIisiYp~Lspp~Lt~~~SnRVCnaLaLLQ~vA-shpetR~ 126 (321)
.+++.|+.|+..|+.--...++....+... |.+..|++=+- .+ ...-...|+..|..++ .+++.+.
T Consensus 24 ~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~-g~i~~L~~lL~-------~~-----~~~v~~~a~~~L~~l~~~~~~~~~ 90 (210)
T 4db6_A 24 PDQQELQSALRKLSQIASGGNEQIQAVIDA-GALPALVQLLS-------SP-----NEQILQEALWALSNIASGGNEQIQ 90 (210)
T ss_dssp SCHHHHHHHHHHHHHHHTSCHHHHHHHHHT-THHHHHHHHTT-------CS-----CHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHc-CCHHHHHHHHc-------CC-----CHHHHHHHHHHHHHHhcCCcHHHH
Confidence 367779998888877654445555555555 77777765442 11 1122335666677777 5778899
Q ss_pred hhhhhccccccccccccccCCCCcchhhhhhhhhhhhhcccCchHHHHHHhhhchhhhhhhhccccchhhHHHHHHHHHH
Q 042013 127 LFLNAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKVDDTEVISFLLSTEIIPLCLRTMEMGSELSKTVATFIVQK 206 (321)
Q Consensus 127 ~FL~a~iplyLyPfL~ttsk~r~~E~LRLtSLGVIgaLvK~dd~evI~fLL~tEiiPLCLriME~GselSKtvAtfIlqK 206 (321)
.++++...-.|..+|+.. -+.+|-...++++.+... +++....+.+...+|..++.++.+++-.+..|...+..
T Consensus 91 ~i~~~g~i~~L~~lL~~~-----~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~ 164 (210)
T 4db6_A 91 AVIDAGALPALVQLLSSP-----NEQILQEALWALSNIASG-GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSN 164 (210)
T ss_dssp HHHHTTCHHHHHHHTTCS-----CHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHcCC-----cHHHHHHHHHHHHHHHcC-CHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 999998877787888654 368899999999999874 56677778899999999999999999999999999998
Q ss_pred HhccccchhhhhhhhhHHHHHHHHHHHHHHHHhhCCChhhHHHHHHHHHHhhCC
Q 042013 207 ILLDDVGLDYICTTAERFFAVGRVLGNMVAALAEQPSSRLLKHIIRCYLRLSDN 260 (321)
Q Consensus 207 IL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiirCYlRLs~n 260 (321)
+..+..... +.+. -..++..++ .+...+++++-++...+--+|+++
T Consensus 165 l~~~~~~~~------~~~~-~~g~i~~L~-~ll~~~~~~v~~~a~~aL~~l~~~ 210 (210)
T 4db6_A 165 IASGGNEQK------QAVK-EAGALEKLE-QLQSHENEKIQKEAQEALEKLQSH 210 (210)
T ss_dssp HHTSCHHHH------HHHH-HTTHHHHHH-HGGGCSCHHHHHHHHHHHHHHCC-
T ss_pred HHcCCcHHH------HHHH-HCCCHHHHH-HHHhCCCHHHHHHHHHHHHHHhcC
Confidence 876532211 0111 112333333 344578899999999888888764
No 5
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=97.45 E-value=0.0043 Score=51.61 Aligned_cols=175 Identities=13% Similarity=0.144 Sum_probs=126.1
Q ss_pred HHHHHHHHHHh-cCchhhhhhhhhccccccccccccccCCCCcchhhhhhhhhhhhhcccCchHHHHHHhhhchhhhhhh
Q 042013 109 CNALALLQCVA-SHPDTRMLFLNAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKVDDTEVISFLLSTEIIPLCLR 187 (321)
Q Consensus 109 CnaLaLLQ~vA-shpetR~~FL~a~iplyLyPfL~ttsk~r~~E~LRLtSLGVIgaLvK~dd~evI~fLL~tEiiPLCLr 187 (321)
.+|+..|..++ .+++.+..++++...-.|..+|+.. .+.+|-..++++|.+... +++....+.+...+|..++
T Consensus 30 ~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~-----~~~v~~~a~~~L~~l~~~-~~~~~~~i~~~g~i~~L~~ 103 (210)
T 4db6_A 30 QSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSP-----NEQILQEALWALSNIASG-GNEQIQAVIDAGALPALVQ 103 (210)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS-----CHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCC-----CHHHHHHHHHHHHHHhcC-CcHHHHHHHHCCCHHHHHH
Confidence 36666777777 5678999999998877777888643 468899999999998754 4566677788999999999
Q ss_pred hccccchhhHHHHHHHHHHHhccccch-hhhhhhhhHHHHHHHHHHHHHHHHhhCCChhhHHHHHHHHHHhhCC-hhhHH
Q 042013 188 TMEMGSELSKTVATFIVQKILLDDVGL-DYICTTAERFFAVGRVLGNMVAALAEQPSSRLLKHIIRCYLRLSDN-PRACD 265 (321)
Q Consensus 188 iME~GselSKtvAtfIlqKIL~dd~GL-~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiirCYlRLs~n-~rar~ 265 (321)
.++.++.-.+.-|...+..|..++..- ..+. -..++..++.- .+.+++++-++..++-..|+.+ +..+.
T Consensus 104 lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~--------~~~~i~~L~~l-l~~~~~~v~~~a~~aL~~l~~~~~~~~~ 174 (210)
T 4db6_A 104 LLSSPNEQILQEALWALSNIASGGNEQIQAVI--------DAGALPALVQL-LSSPNEQILQEALWALSNIASGGNEQKQ 174 (210)
T ss_dssp HTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHH--------HTTHHHHHHHH-TTCSCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHH--------HcCcHHHHHHH-HcCCCHHHHHHHHHHHHHHHcCCcHHHH
Confidence 999999999999999999987544321 1111 01234444443 3467999999999999999987 77776
Q ss_pred HHHhcCCcccchhhhhhhh-cCCHHHHHHHHHHHHHhC
Q 042013 266 ALRSCLPDMLRDATFSSCL-REDPTTRRWLQQLLHNVG 302 (321)
Q Consensus 266 aL~~~LP~~Lrd~~f~~~l-~~D~~~k~~l~qLl~nl~ 302 (321)
.+.+. ...+. +..++ .+|+.+++.-...+.++.
T Consensus 175 ~~~~~---g~i~~-L~~ll~~~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 175 AVKEA---GALEK-LEQLQSHENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp HHHHT---THHHH-HHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred HHHHC---CCHHH-HHHHHhCCCHHHHHHHHHHHHHHh
Confidence 65432 11111 11222 468888988888888875
No 6
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=97.34 E-value=0.011 Score=54.85 Aligned_cols=241 Identities=19% Similarity=0.216 Sum_probs=158.6
Q ss_pred chhhhHHHHHHHhcCCc--------------chHHHHHHHHhhhhhcccchhhHHhhhhchHHHHHHHHHhhcCCCCCCC
Q 042013 34 DRKMASAEHLVLDLSNP--------------DLRENALLELSKNKELFQDLAPFVWNSFGTIAALIQEIVSIYPVLSPPN 99 (321)
Q Consensus 34 ~~~~~~v~q~I~~L~~p--------------~~Re~AL~eLsk~re~~~~La~~LW~S~Gtia~LLQEIisiYp~Lspp~ 99 (321)
..+.+.|...+.-|.+| +.|+.|+..|...-+..+ -|..+ ...|.+..|++ ..|..++
T Consensus 24 ~d~~~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~~d-na~~~-~~~G~l~~Lv~------~lL~s~~ 95 (296)
T 1xqr_A 24 RGEVEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMD-NAADF-CQLSGMHLLVG------RYLEAGA 95 (296)
T ss_dssp HHHHHHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTSHH-HHHHH-HHTTHHHHHHH------TTTTCSS
T ss_pred CCHHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhChh-hHHHH-HHcCCHHHHHH------HHHcCCC
Confidence 34455666666666676 679999999998877653 55555 56688888876 3444331
Q ss_pred CChhhhhHHHHHHHHHHHHh-cCchhhhhhhhhccccccccccccccCCCCcchhhhhhhhhhhhhcccCchHHHHHHhh
Q 042013 100 LTPAQSNRVCNALALLQCVA-SHPDTRMLFLNAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKVDDTEVISFLLS 178 (321)
Q Consensus 100 Lt~~~SnRVCnaLaLLQ~vA-shpetR~~FL~a~iplyLyPfL~ttsk~r~~E~LRLtSLGVIgaLvK~dd~evI~fLL~ 178 (321)
...| ..|...|-.+| .+|+.|..++++...-.|...|+.. +-+.+|-..+..|+.+++.+.+ .+.-+..
T Consensus 96 ----~~vr-~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~----~~~~v~~~A~~ALsnl~~~~~~-~~~~~~~ 165 (296)
T 1xqr_A 96 ----AGLR-WRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRD----ACDTVRVKALFAISCLVREQEA-GLLQFLR 165 (296)
T ss_dssp ----HHHH-HHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHC----SCHHHHHHHHHHHHHHHTTCHH-HHHHHHH
T ss_pred ----HHHH-HHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccC----CCHHHHHHHHHHHHHHHcCCcH-HHHHHHH
Confidence 2222 24444444555 5688999999998887788888642 1267888999999999986544 4444455
Q ss_pred hchhhhhhhhccccchhhHHHHHHHHHHHhccccchhhhhhhhhHHHHHH--HHHHHHHHHHhhCCChhhHHHHHHHHHH
Q 042013 179 TEIIPLCLRTMEMGSELSKTVATFIVQKILLDDVGLDYICTTAERFFAVG--RVLGNMVAALAEQPSSRLLKHIIRCYLR 256 (321)
Q Consensus 179 tEiiPLCLriME~GselSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~--~vL~~mV~~l~~~ps~RLLKhiirCYlR 256 (321)
...+|.+++.+..++...|.-|.+.|..+...+ .+...++. .++..+|. +...+++.+..++.++--.
T Consensus 166 ~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~---------~~~~~~vv~~g~i~~Lv~-LL~~~d~~v~~~al~aL~~ 235 (296)
T 1xqr_A 166 LDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGH---------PEHKGTLCSMGMVQQLVA-LVRTEHSPFHEHVLGALCS 235 (296)
T ss_dssp TTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC---------GGGHHHHHHTTHHHHHHH-HHTSCCSTHHHHHHHHHHH
T ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC---------hHHHHHHHHcCCHHHHHH-HHcCCChhHHHHHHHHHHH
Confidence 789999999999999999999999998887642 22222222 24455544 4456799999999999988
Q ss_pred hhCC-hhhHHHHHh---cCCcccchhhhhhhh-cC-CHHHHHHHHHHHHHhCC
Q 042013 257 LSDN-PRACDALRS---CLPDMLRDATFSSCL-RE-DPTTRRWLQQLLHNVGV 303 (321)
Q Consensus 257 Ls~n-~rar~aL~~---~LP~~Lrd~~f~~~l-~~-D~~~k~~l~qLl~nl~~ 303 (321)
|..+ +.++...+. ++...|.. ....+- ++ ..+..+...+++.+.-.
T Consensus 236 l~~~~~~~~~~~~~~~~~l~~lL~~-~~~~lq~~e~~~e~~~~~~~il~~~f~ 287 (296)
T 1xqr_A 236 LVTDFPQGVRECREPELGLEELLRH-RCQLLQQHEEYQEELEFCEKLLQTCFS 287 (296)
T ss_dssp HHTTCHHHHHHHHCGGGCHHHHHHH-HHHHHTTCGGGHHHHHHHHHHHHHHCC
T ss_pred HHhCChhHHHHHhccHHHHHHHHHH-HHHHccchHHHHHHHHHHHHHHHHHcC
Confidence 8776 444443332 23333333 233322 22 35666677777777763
No 7
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=97.19 E-value=0.016 Score=48.59 Aligned_cols=176 Identities=14% Similarity=0.102 Sum_probs=123.7
Q ss_pred HHHHHHHHHHhcC-chhhhhhhhhccccccccccccccCCCCcchhhhhhhhhhhhhcccCchHHHHHHhhhchhhhhhh
Q 042013 109 CNALALLQCVASH-PDTRMLFLNAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKVDDTEVISFLLSTEIIPLCLR 187 (321)
Q Consensus 109 CnaLaLLQ~vAsh-petR~~FL~a~iplyLyPfL~ttsk~r~~E~LRLtSLGVIgaLvK~dd~evI~fLL~tEiiPLCLr 187 (321)
..|+..|..++++ ++.+..++++.+.-.|..+|+.. .+.+|...+++++.+... +++....+.+...+|..++
T Consensus 20 ~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~-----~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~i~~l~~ 93 (252)
T 4hxt_A 20 KEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTST-----DSEVQKEAARALANIASG-PDEAIKAIVDAGGVEVLVK 93 (252)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS-----CHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCC-----CHHHHHHHHHHHHHHHcC-ChHHHHHHHHCCCHHHHHH
Confidence 3556666667655 46999999998888888888753 378999999999999864 4677778889999999999
Q ss_pred hccccchhhHHHHHHHHHHHhc-cccchhhhhhhhhHHHHHHHHHHHHHHHHhhCCChhhHHHHHHHHHHhhC-ChhhHH
Q 042013 188 TMEMGSELSKTVATFIVQKILL-DDVGLDYICTTAERFFAVGRVLGNMVAALAEQPSSRLLKHIIRCYLRLSD-NPRACD 265 (321)
Q Consensus 188 iME~GselSKtvAtfIlqKIL~-dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiirCYlRLs~-n~rar~ 265 (321)
.++.+++-.+..|...+..+-. ++.....+.. ..++..++ .+.+.+++.+.+...++--.|+. ++..+.
T Consensus 94 ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~--------~~~i~~L~-~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~ 164 (252)
T 4hxt_A 94 LLTSTDSEVQKEAARALANIASGPDEAIKAIVD--------AGGVEVLV-KLLTSTDSEVQKEAARALANIASGPDEAIK 164 (252)
T ss_dssp HTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHH--------TTHHHHHH-HHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH--------CCCHHHHH-HHHcCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999999988874 3332221111 12344444 34457889999999999999998 444444
Q ss_pred HHHhcCCcccchhhhhhhh-cCCHHHHHHHHHHHHHhCC
Q 042013 266 ALRSCLPDMLRDATFSSCL-REDPTTRRWLQQLLHNVGV 303 (321)
Q Consensus 266 aL~~~LP~~Lrd~~f~~~l-~~D~~~k~~l~qLl~nl~~ 303 (321)
.+.+. ..-.. +..++ .+|+.++..-...+.|+..
T Consensus 165 ~~~~~---~~i~~-L~~ll~~~~~~v~~~a~~~L~~l~~ 199 (252)
T 4hxt_A 165 AIVDA---GGVEV-LVKLLTSTDSEVQKEAARALANIAS 199 (252)
T ss_dssp HHHHT---THHHH-HHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHC---cCHHH-HHHHHCCCCHHHHHHHHHHHHHHHc
Confidence 44321 11111 11222 4577888888888888864
No 8
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=97.17 E-value=0.017 Score=49.24 Aligned_cols=169 Identities=13% Similarity=0.137 Sum_probs=119.6
Q ss_pred HHHhcCchhhhhhhhhccccccccccccccCCCCcchhhhhhhhhhhhhcccCchHHHHHHhhhchhhhhhhhccccchh
Q 042013 116 QCVASHPDTRMLFLNAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKVDDTEVISFLLSTEIIPLCLRTMEMGSEL 195 (321)
Q Consensus 116 Q~vAshpetR~~FL~a~iplyLyPfL~ttsk~r~~E~LRLtSLGVIgaLvK~dd~evI~fLL~tEiiPLCLriME~Gsel 195 (321)
..+..+++.+..++++...-.|..+|...+ +.+|...+++++.+... +++....+.....+|..++.++.+++-
T Consensus 38 ~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~-----~~v~~~a~~~L~~l~~~-~~~~~~~i~~~g~i~~L~~lL~~~~~~ 111 (252)
T 4db8_A 38 QILSDGNEQIQAVIDAGALPALVQLLSSPN-----EQILQEALWALSNIASG-GNEQIQAVIDAGALPALVQLLSSPNEQ 111 (252)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHGGGCSC-----HHHHHHHHHHHHHHTTS-CHHHHHHHHHTTHHHHHHHGGGCSCHH
T ss_pred HHHcCCCchHHHHHHcCcHHHHHHHHcCCC-----HHHHHHHHHHHHHHhcC-CHHHHHHHHHcCCHHHHHHHHcCCCHH
Confidence 334447888999999998888888887543 78899999999999864 455567778889999999999999999
Q ss_pred hHHHHHHHHHHHhccccch-hhhhhhhhHHHHHHHHHHHHHHHHhhCCChhhHHHHHHHHHHhhC-ChhhHHHHHhcCCc
Q 042013 196 SKTVATFIVQKILLDDVGL-DYICTTAERFFAVGRVLGNMVAALAEQPSSRLLKHIIRCYLRLSD-NPRACDALRSCLPD 273 (321)
Q Consensus 196 SKtvAtfIlqKIL~dd~GL-~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiirCYlRLs~-n~rar~aL~~~LP~ 273 (321)
.+..|...+..|-.++... ..+.. ..++..++. +...+++++.+...++...|+. ++..+..+.+.
T Consensus 112 v~~~a~~~L~~l~~~~~~~~~~~~~--------~~~i~~L~~-lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~--- 179 (252)
T 4db8_A 112 ILQEALWALSNIASGGNEQIQAVID--------AGALPALVQ-LLSSPNEQILQEALWALSNIASGGNEQIQAVIDA--- 179 (252)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHH--------TTHHHHHHH-GGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT---
T ss_pred HHHHHHHHHHHhhcCCchHHHHHHH--------CCCHHHHHH-HHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHC---
Confidence 9999999999986655433 22111 123444444 3467899999999999999998 44555544321
Q ss_pred ccchhhhhhhh-cCCHHHHHHHHHHHHHhCC
Q 042013 274 MLRDATFSSCL-REDPTTRRWLQQLLHNVGV 303 (321)
Q Consensus 274 ~Lrd~~f~~~l-~~D~~~k~~l~qLl~nl~~ 303 (321)
..-.. +..++ .+|+.++..-...+.|+..
T Consensus 180 ~~i~~-L~~ll~~~~~~v~~~a~~~L~~l~~ 209 (252)
T 4db8_A 180 GALPA-LVQLLSSPNEQILQEALWALSNIAS 209 (252)
T ss_dssp TCHHH-HHHGGGCSSHHHHHHHHHHHHHHTT
T ss_pred CCHHH-HHHHHCCCCHHHHHHHHHHHHHHhc
Confidence 11111 11222 3577888888888888863
No 9
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=96.89 E-value=0.11 Score=49.60 Aligned_cols=234 Identities=12% Similarity=0.108 Sum_probs=148.8
Q ss_pred hHHHHHHHhcC--CcchHHHHHHHHhhhhhcc--cchhhHHhhhhchHHHHHHHHHhhcCCCCCCCCChhhhhHHHHHHH
Q 042013 38 ASAEHLVLDLS--NPDLRENALLELSKNKELF--QDLAPFVWNSFGTIAALIQEIVSIYPVLSPPNLTPAQSNRVCNALA 113 (321)
Q Consensus 38 ~~v~q~I~~L~--~p~~Re~AL~eLsk~re~~--~~La~~LW~S~Gtia~LLQEIisiYp~Lspp~Lt~~~SnRVCnaLa 113 (321)
+.+-.++..|. +++.|..|+..|.+--... +....++ . -|.+..|++=+-+- + ...-| ..|+.
T Consensus 74 ~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~-~-~g~v~~Lv~lL~~~-------~---~~~v~-~~A~~ 140 (528)
T 4b8j_A 74 ESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVI-Q-SGVVPRFVQFLTRE-------D---FPQLQ-FEAAW 140 (528)
T ss_dssp -CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHH-H-TTCHHHHHHHHTCT-------T---CHHHH-HHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHH-H-CCCHHHHHHHhCCC-------C---CHHHH-HHHHH
Confidence 34556666665 5678999998887753222 3333332 3 38888887754221 0 01122 24555
Q ss_pred HHHHHhcC-chhhhhhhhhccccccccccccccCCCCcchhhhhhhhhhhhhcccCchHHHHHHhhhchhhhhhhhc-cc
Q 042013 114 LLQCVASH-PDTRMLFLNAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKVDDTEVISFLLSTEIIPLCLRTM-EM 191 (321)
Q Consensus 114 LLQ~vAsh-petR~~FL~a~iplyLyPfL~ttsk~r~~E~LRLtSLGVIgaLvK~dd~evI~fLL~tEiiPLCLriM-E~ 191 (321)
.|..++++ ++.+..++++...-.|..+|+. +.+.+|-..++++|.|.. ++++.-..+.....+|.+++.+ +.
T Consensus 141 ~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-----~~~~v~~~a~~aL~~l~~-~~~~~~~~i~~~g~l~~Ll~lL~~~ 214 (528)
T 4b8j_A 141 ALTNIASGTSENTKVVIDHGAVPIFVKLLGS-----SSDDVREQAVWALGNVAG-DSPKCRDLVLANGALLPLLAQLNEH 214 (528)
T ss_dssp HHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC-----SCHHHHHHHHHHHHHHHH-TCHHHHHHHHHTTCHHHHHHTCCTT
T ss_pred HHHHHhCCCHHHHHHHHhCCcHHHHHHHhcC-----CCHHHHHHHHHHHHHHhC-CChhhHHHHHHCCcHHHHHHHHhcC
Confidence 66677775 8999999988776666677764 457899999999998875 4566777888899999999999 66
Q ss_pred cchhhHHHHHHHHHHHhccccchhhhhhhhhHHHHHHHHHHHHHHHHhhCCChhhHHHHHHHHHHhhCChhhH-HHHHhc
Q 042013 192 GSELSKTVATFIVQKILLDDVGLDYICTTAERFFAVGRVLGNMVAALAEQPSSRLLKHIIRCYLRLSDNPRAC-DALRSC 270 (321)
Q Consensus 192 GselSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiirCYlRLs~n~rar-~aL~~~ 270 (321)
.+.-.+.-|+..+..+..+... .++..+..++..++.- ...+++.+...++++...|++++..+ ..+...
T Consensus 215 ~~~~v~~~a~~~L~~L~~~~~~--------~~~~~~~~~l~~L~~l-L~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~ 285 (528)
T 4b8j_A 215 TKLSMLRNATWTLSNFCRGKPQ--------PSFEQTRPALPALARL-IHSNDEEVLTDACWALSYLSDGTNDKIQAVIEA 285 (528)
T ss_dssp CCHHHHHHHHHHHHHHHCSSSC--------CCHHHHTTHHHHHHHH-TTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHcCCCC--------CcHHHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 6777778888888877665421 2233445555555544 46789999999999999999876433 222210
Q ss_pred CCcccchhhhhhhh-cCCHHHHHHHHHHHHHhCC
Q 042013 271 LPDMLRDATFSSCL-REDPTTRRWLQQLLHNVGV 303 (321)
Q Consensus 271 LP~~Lrd~~f~~~l-~~D~~~k~~l~qLl~nl~~ 303 (321)
..-. .+..++ ..++.++..-...+.|+..
T Consensus 286 ---g~v~-~Lv~lL~~~~~~v~~~a~~~L~nl~~ 315 (528)
T 4b8j_A 286 ---GVCP-RLVELLLHPSPSVLIPALRTVGNIVT 315 (528)
T ss_dssp ---TCHH-HHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred ---CHHH-HHHHHHcCCChhHHHHHHHHHHHHHc
Confidence 0110 111122 2455666666666666654
No 10
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=96.17 E-value=0.078 Score=50.63 Aligned_cols=209 Identities=13% Similarity=0.084 Sum_probs=122.4
Q ss_pred CcchHHHHHHHHhhhhhcccchhhHHhhhhchHHHHHHHHHhhcCCCCCCCCChhhhhHHHHHHHHHHHHh-cCchhhhh
Q 042013 49 NPDLRENALLELSKNKELFQDLAPFVWNSFGTIAALIQEIVSIYPVLSPPNLTPAQSNRVCNALALLQCVA-SHPDTRML 127 (321)
Q Consensus 49 ~p~~Re~AL~eLsk~re~~~~La~~LW~S~Gtia~LLQEIisiYp~Lspp~Lt~~~SnRVCnaLaLLQ~vA-shpetR~~ 127 (321)
+++.|+.|+.-|+.--...++....+.+ .|.+..|++=+-+.+ +.......|.+ |..++ ..++.+..
T Consensus 299 ~~~v~~~a~~~L~nl~~~~~~~~~~~~~-~~~l~~L~~lL~~~~--------~~~v~~~A~~~---L~nl~~~~~~~~~~ 366 (528)
T 4b8j_A 299 SPSVLIPALRTVGNIVTGDDAQTQCIID-HQALPCLLSLLTQNL--------KKSIKKEACWT---ISNITAGNKDQIQA 366 (528)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHHHHHHHT-TTHHHHHHHHHHSCC--------CHHHHHHHHHH---HHHHHTSCHHHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHH-hhhHHHHHHHHcCCC--------cHHHHHHHHHH---HHHHHCCCHHHHHH
Confidence 3445777777666544333444444444 366766655443210 12222233333 33444 56677788
Q ss_pred hhhhccccccccccccccCCCCcchhhhhhhhhhhhhcccCchHHHHHHhhhchhhhhhhhccccchhhHHHHHHHHHHH
Q 042013 128 FLNAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKVDDTEVISFLLSTEIIPLCLRTMEMGSELSKTVATFIVQKI 207 (321)
Q Consensus 128 FL~a~iplyLyPfL~ttsk~r~~E~LRLtSLGVIgaLvK~dd~evI~fLL~tEiiPLCLriME~GselSKtvAtfIlqKI 207 (321)
++++++.-.|.-.|... .+.+|-..+++++.+....+++.+.++.+..++|..+..++.+..-.+..|...+..|
T Consensus 367 ~~~~~~i~~L~~lL~~~-----~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l 441 (528)
T 4b8j_A 367 VINAGIIGPLVNLLQTA-----EFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENI 441 (528)
T ss_dssp HHHTTCHHHHHHHHHHS-----CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHhcC-----CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 88888766666666543 4678999999999999887899999999999999999999999988899999999998
Q ss_pred hccccc--------hhhhhhhhhHHHHHHHHHHHHHHHHhhCCChhhHHHHHHHHHHhhCChhhHHHHHhcCCcccchhh
Q 042013 208 LLDDVG--------LDYICTTAERFFAVGRVLGNMVAALAEQPSSRLLKHIIRCYLRLSDNPRACDALRSCLPDMLRDAT 279 (321)
Q Consensus 208 L~dd~G--------L~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiirCYlRLs~n~rar~aL~~~LP~~Lrd~~ 279 (321)
+....- .+-.|...+..- .+. .+..+..++++.+-+....+--++.+...- +.+..++|..-..++
T Consensus 442 ~~~~~~~~~~~~~~~~~~~~~i~~~~----~~~-~l~~L~~~~~~~v~~~a~~il~~~~~~e~~-~~~~~~~~~~~~~~~ 515 (528)
T 4b8j_A 442 LKVGETDKTLAAGDVNVFSQMIDEAE----GLE-KIENLQSHDNNEIYEKAVKILEAYWMDEED-DTMGATTVAAPQGAT 515 (528)
T ss_dssp HHHHHHHHHHHTCSCCHHHHHHHHTT----HHH-HHHHGGGCSSHHHHHHHHHHHHHHCC--------------------
T ss_pred HHHHHHhhhcccccccHHHHHHHHCC----cHH-HHHHHHcCCCHHHHHHHHHHHHHHCCCccc-ccccccCCCccccce
Confidence 865432 112222222221 122 234567788888877777766666554332 336666776655666
Q ss_pred h
Q 042013 280 F 280 (321)
Q Consensus 280 f 280 (321)
|
T Consensus 516 ~ 516 (528)
T 4b8j_A 516 F 516 (528)
T ss_dssp -
T ss_pred e
Confidence 6
No 11
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=96.09 E-value=0.25 Score=49.00 Aligned_cols=195 Identities=10% Similarity=0.024 Sum_probs=128.7
Q ss_pred CcchHHHHHHHHhhhhhcccchhhHHhhhhchHHHHHHHHHhhcCCCCCCCCChhhhhHHHHHHHHHHHHhcCchhhhhh
Q 042013 49 NPDLRENALLELSKNKELFQDLAPFVWNSFGTIAALIQEIVSIYPVLSPPNLTPAQSNRVCNALALLQCVASHPDTRMLF 128 (321)
Q Consensus 49 ~p~~Re~AL~eLsk~re~~~~La~~LW~S~Gtia~LLQEIisiYp~Lspp~Lt~~~SnRVCnaLaLLQ~vAshpetR~~F 128 (321)
+++.|+.|+..|.+--+..+.. ..+....|.+..|++-+.+- + ...-| -+|...|..++.+++.|..+
T Consensus 27 ~~~vr~~A~~~L~~La~~~~~~-~~i~~~~~~i~~Lv~~L~~~------~----~~~~~-~~A~~~L~~Ls~~~~~~~~i 94 (644)
T 2z6h_A 27 DQVVVNKAAVMVHQLSKKEASR-HAIMRSPQMVSAIVRTMQNT------N----DVETA-RCTAGTLHNLSHHREGLLAI 94 (644)
T ss_dssp CHHHHHHHHHHHHHHHTSTTHH-HHHTTCHHHHHHHHHHHHSC------C----CHHHH-HHHHHHHHHHTTSHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHCCChhH-HHHHhccChHHHHHHHHhcC------C----CHHHH-HHHHHHHHHHhcChhhHHHH
Confidence 6677999888777654433222 23444557788777666431 0 11122 24555666899999999999
Q ss_pred hhhccccccccccccccCCCCcchhhhhhhhhhhhhcccCchHHHHHHhhhchhhhhhhhccccchhhHHHHHHHHHHHh
Q 042013 129 LNAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKVDDTEVISFLLSTEIIPLCLRTMEMGSELSKTVATFIVQKIL 208 (321)
Q Consensus 129 L~a~iplyLyPfL~ttsk~r~~E~LRLtSLGVIgaLvK~dd~evI~fLL~tEiiPLCLriME~GselSKtvAtfIlqKIL 208 (321)
.++...--|..+|+. +.+.+|...+.+++.|...+ .+....+.....||..++.+..++.--+..|...+..+-
T Consensus 95 ~~~g~i~~Lv~lL~~-----~~~~v~~~A~~aL~nL~~~~-~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La 168 (644)
T 2z6h_A 95 FKSGGIPALVKMLGS-----PVDSVLFYAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILA 168 (644)
T ss_dssp HTTTHHHHHHHHTTC-----SSHHHHHHHHHHHHHHHHHS-TTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHhC-----CCHHHHHHHHHHHHHHHhCc-chhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHH
Confidence 888765556666653 24789999999999998764 345556677899999999999988766666666777766
Q ss_pred c-cccchhhhhhhhhHHHHHHHHHHHHHHHHhhCCChhhHHHHHHHHHHhhCChhhHHHHHh
Q 042013 209 L-DDVGLDYICTTAERFFAVGRVLGNMVAALAEQPSSRLLKHIIRCYLRLSDNPRACDALRS 269 (321)
Q Consensus 209 ~-dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiirCYlRLs~n~rar~aL~~ 269 (321)
. ++.+-..++.. ..+..++.-+.......+.....++-..|+.++..|..+.+
T Consensus 169 ~~~~~~~~~i~~~--------g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~ 222 (644)
T 2z6h_A 169 YGNQESKLIILAS--------GGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVE 222 (644)
T ss_dssp TTCHHHHHHHHHT--------THHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHH
T ss_pred hcCcHHHHHHHHc--------CChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHH
Confidence 4 33332222221 23444444444444567788888888888888888877764
No 12
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=95.88 E-value=0.58 Score=44.83 Aligned_cols=137 Identities=13% Similarity=0.176 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHhcC-chhhhhhhhhccccccccccccccCCCCcchhhhhhhhhhhhhcccCchHHHHHHhhhchhhhhh
Q 042013 108 VCNALALLQCVASH-PDTRMLFLNAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKVDDTEVISFLLSTEIIPLCL 186 (321)
Q Consensus 108 VCnaLaLLQ~vAsh-petR~~FL~a~iplyLyPfL~ttsk~r~~E~LRLtSLGVIgaLvK~dd~evI~fLL~tEiiPLCL 186 (321)
..+++..|-.++.+ ++.+..++++.+.-.|..+|.. +-+.+|...++++|.++..+ ++....++...++|.++
T Consensus 274 ~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~-----~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~l~~L~ 347 (530)
T 1wa5_B 274 LVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSH-----ESTLVQTPALRAVGNIVTGN-DLQTQVVINAGVLPALR 347 (530)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGC-----SCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCC-----CChhhHHHHHHHHHHHHcCC-HHHHHHHHHcchHHHHH
Confidence 34566666677755 5778888888887788888863 24678999999999998754 45566677889999999
Q ss_pred hhccccchhhHHHHHHHHHHHhcc-ccchhhhhhhhhHHHHHHHHHHHHHHHHhhCCChhhHHHHHHHHHHhhC
Q 042013 187 RTMEMGSELSKTVATFIVQKILLD-DVGLDYICTTAERFFAVGRVLGNMVAALAEQPSSRLLKHIIRCYLRLSD 259 (321)
Q Consensus 187 riME~GselSKtvAtfIlqKIL~d-d~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiirCYlRLs~ 259 (321)
..+..+..--+..|...+..|-.. .....++.. ..++..++..+ ..+++++-+.+.++--.|+.
T Consensus 348 ~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~--------~~~l~~L~~lL-~~~~~~v~~~a~~aL~~l~~ 412 (530)
T 1wa5_B 348 LLLSSPKENIKKEACWTISNITAGNTEQIQAVID--------ANLIPPLVKLL-EVAEYKTKKEACWAISNASS 412 (530)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH--------TTCHHHHHHHH-HHSCHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH--------CCCHHHHHHHH-hcCCHHHHHHHHHHHHHHHh
Confidence 999999888888899999887752 222222111 12333333333 34677777777777777765
No 13
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=95.82 E-value=0.8 Score=41.76 Aligned_cols=222 Identities=14% Similarity=0.072 Sum_probs=132.7
Q ss_pred CcchHHHHHHHHhhhhhcccchhhHHhhhhchHHHHHHHHHhhcCCCCCCCCChhhhhHHHHHHHHHHHHhcC--chhhh
Q 042013 49 NPDLRENALLELSKNKELFQDLAPFVWNSFGTIAALIQEIVSIYPVLSPPNLTPAQSNRVCNALALLQCVASH--PDTRM 126 (321)
Q Consensus 49 ~p~~Re~AL~eLsk~re~~~~La~~LW~S~Gtia~LLQEIisiYp~Lspp~Lt~~~SnRVCnaLaLLQ~vAsh--petR~ 126 (321)
+++-|+.|+.-|..--...++....+-.. |.+..|++=+-+ . .... -..+++..|-.++.+ |+.+.
T Consensus 120 ~~~vr~~a~~~L~~l~~~~~~~~~~~~~~-~~i~~L~~~l~~------~----~~~~-v~~~a~~~L~~l~~~~~~~~~~ 187 (450)
T 2jdq_A 120 FEDVQEQAVWALGNIAGDSTMCRDYVLDC-NILPPLLQLFSK------Q----NRLT-MTRNAVWALSNLCRGKSPPPEF 187 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHT-TCHHHHHHHTTS------C----CCHH-HHHHHHHHHHHHHCCSSSCCCG
T ss_pred CHHHHHHHHHHHHHHccCCHHHHHHHHHC-CCHHHHHHHhcC------C----CCHH-HHHHHHHHHHHHhCCCCCCCCH
Confidence 45678888877776544444433333333 666666553311 0 1112 223455555566654 55555
Q ss_pred hhhhhccccccccccccccCCCCcchhhhhhhhhhhhhcccCchHHHHHHhhhchhhhhhhhccccchhhHHHHHHHHHH
Q 042013 127 LFLNAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKVDDTEVISFLLSTEIIPLCLRTMEMGSELSKTVATFIVQK 206 (321)
Q Consensus 127 ~FL~a~iplyLyPfL~ttsk~r~~E~LRLtSLGVIgaLvK~dd~evI~fLL~tEiiPLCLriME~GselSKtvAtfIlqK 206 (321)
.++..-+| .|..+|+. .-+.+|-...++++.+...+ ++.+..+....++|..++.+..++.-.+..|...+..
T Consensus 188 ~~~~~~l~-~L~~~l~~-----~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~ 260 (450)
T 2jdq_A 188 AKVSPCLN-VLSWLLFV-----SDTDVLADACWALSYLSDGP-NDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGN 260 (450)
T ss_dssp GGTGGGHH-HHHHHTTC-----CCHHHHHHHHHHHHHHTSSS-HHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHcc-----CCHHHHHHHHHHHHHHHCCC-cHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHH
Confidence 55533333 34455542 23678888999999888653 4667788889999999999998888888889988888
Q ss_pred Hhccccch-hhhhhhhhHHHHHHHHHHHHHHHHhhCCChhhHHHHHHHHHHhhC-ChhhHHHHHhcCCcccchhhhhhhh
Q 042013 207 ILLDDVGL-DYICTTAERFFAVGRVLGNMVAALAEQPSSRLLKHIIRCYLRLSD-NPRACDALRSCLPDMLRDATFSSCL 284 (321)
Q Consensus 207 IL~dd~GL-~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiirCYlRLs~-n~rar~aL~~~LP~~Lrd~~f~~~l 284 (321)
+...+... ..+.. ..++..++. +...+++++-+..+++--.++. ++..+..+.+. .+-. .+..++
T Consensus 261 l~~~~~~~~~~~~~--------~~~l~~L~~-ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~---~~l~-~L~~~l 327 (450)
T 2jdq_A 261 IVTGDDIQTQVILN--------CSALQSLLH-LLSSPKESIKKEACWTISNITAGNRAQIQTVIDA---NIFP-ALISIL 327 (450)
T ss_dssp HTTSCHHHHHHHHT--------TTHHHHHHH-HTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHT---THHH-HHHHHH
T ss_pred HhhCChHHHHHHHH--------CccHHHHHH-HHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHC---CCHH-HHHHHH
Confidence 87654321 11110 124444443 3456789999999999999986 56555544421 1111 111222
Q ss_pred -cCCHHHHHHHHHHHHHhC
Q 042013 285 -REDPTTRRWLQQLLHNVG 302 (321)
Q Consensus 285 -~~D~~~k~~l~qLl~nl~ 302 (321)
.+|+.+++.-...+.|+.
T Consensus 328 ~~~~~~v~~~a~~~L~~l~ 346 (450)
T 2jdq_A 328 QTAEFRTRKEAAWAITNAT 346 (450)
T ss_dssp HHSCHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHH
Confidence 356777777666666664
No 14
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=95.67 E-value=1.4 Score=41.17 Aligned_cols=231 Identities=12% Similarity=0.089 Sum_probs=134.0
Q ss_pred CcchHHHHHHHHhhhhhcccchhhHHhhhhchHHHHHHHHHhhcCCCCCCCCChhhhhHHHHHHHHHHHHhcC-ch---h
Q 042013 49 NPDLRENALLELSKNKELFQDLAPFVWNSFGTIAALIQEIVSIYPVLSPPNLTPAQSNRVCNALALLQCVASH-PD---T 124 (321)
Q Consensus 49 ~p~~Re~AL~eLsk~re~~~~La~~LW~S~Gtia~LLQEIisiYp~Lspp~Lt~~~SnRVCnaLaLLQ~vAsh-pe---t 124 (321)
+++.|+.|..-|+.--..-++-...++.. |.+..|++-+.+.-. ...-..+++..|..++.+ |+ .
T Consensus 279 ~~~v~~~a~~~L~~L~~~~~~~~~~~~~~-~~v~~L~~ll~~~~~----------~~~v~~~a~~~L~nl~~~~~~~~~~ 347 (529)
T 1jdh_A 279 DINVVTCAAGILSNLTCNNYKNKMMVCQV-GGIEALVRTVLRAGD----------REDITEPAICALRHLTSRHQEAEMA 347 (529)
T ss_dssp CHHHHHHHHHHHHHHTTTCHHHHHHHHHT-THHHHHHHHHHHHTT----------CHHHHHHHHHHHHHHTSSSTTHHHH
T ss_pred CHHHHHHHHHHHHHHhcCCHHHHHHHHHc-CChHHHHHHHHccCC----------HHHHHHHHHHHHHHHHcCCchHHHH
Confidence 56778887776666533334455556654 777777766643210 012335677777777765 44 4
Q ss_pred hhhhhhhccccccccccccccCCCCcchhhhhhhhhhhhhcccCchHHHHHHhhhchhhhhhhhccccchhhHHHHHHHH
Q 042013 125 RMLFLNAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKVDDTEVISFLLSTEIIPLCLRTMEMGSELSKTVATFIV 204 (321)
Q Consensus 125 R~~FL~a~iplyLyPfL~ttsk~r~~E~LRLtSLGVIgaLvK~dd~evI~fLL~tEiiPLCLriME~GselSKtvAtfIl 204 (321)
|..++++...-.|..+|... ..+.+|-..+++++-+...++. ...+.+..++|..+..+..++.-.|.-|.+.+
T Consensus 348 ~~~i~~~~~i~~L~~lL~~~----~~~~v~~~a~~~l~nl~~~~~~--~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l 421 (529)
T 1jdh_A 348 QNAVRLHYGLPVVVKLLHPP----SHWPLIKATVGLIRNLALCPAN--HAPLREQGAIPRLVQLLVRAHQDTQRRTSMGG 421 (529)
T ss_dssp HHHHHHTTCHHHHHHTTSTT----CCHHHHHHHHHHHHHHTTSGGG--HHHHHHTTHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHcCChhHHHHHhccc----cchHHHHHHHHHHHHHhcChhh--hHHHHHcCCHHHHHHHHHHHhHHHHHHHhccc
Confidence 77888887655555666532 2357888889999988864333 36777889999999998877655555454433
Q ss_pred HHHhccc------------cchhhhhhhhhHHHHHH--HHHHHHHHHHhhCCChhhHHHHHHHHHHhhCChhhHHHHHhc
Q 042013 205 QKILLDD------------VGLDYICTTAERFFAVG--RVLGNMVAALAEQPSSRLLKHIIRCYLRLSDNPRACDALRSC 270 (321)
Q Consensus 205 qKIL~dd------------~GL~YiC~t~eRF~av~--~vL~~mV~~l~~~ps~RLLKhiirCYlRLs~n~rar~aL~~~ 270 (321)
...-..+ ..|...|...+--..+. .++ ..+..+..++++.+.+....+...|+.++..+..+.++
T Consensus 422 ~n~~~~~~~~~~~i~~~~~~al~~L~~~~~~~~~l~~~~~v-~~l~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~i~~~ 500 (529)
T 1jdh_A 422 TQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTI-PLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAE 500 (529)
T ss_dssp ----CBTTBCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCH-HHHHHGGGCSCHHHHHHHHHHHHHHTTSHHHHHHHHHT
T ss_pred CchhhhccccHHHHHHHHHHHHHHHhcCchHHHHHhccCCc-cHHHHHHcCCchHHHHHHHHHHHHHhcCHHHHHHHHHc
Confidence 3200001 11222222211000010 111 23334557889999999999999999988888877643
Q ss_pred CCcccchhhhhhhh-cCCHHHHHHHHHHHHHh
Q 042013 271 LPDMLRDATFSSCL-REDPTTRRWLQQLLHNV 301 (321)
Q Consensus 271 LP~~Lrd~~f~~~l-~~D~~~k~~l~qLl~nl 301 (321)
= -. ..+..++ ..|+.++..-...+.++
T Consensus 501 ~---~~-~~L~~l~~~~~~~v~~~a~~aL~~l 528 (529)
T 1jdh_A 501 G---AT-APLTELLHSRNEGVATYAAAVLFRM 528 (529)
T ss_dssp T---CH-HHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred C---Ch-HHHHHHhcCCCHHHHHHHHHHHHhc
Confidence 1 11 1222333 45788888777777765
No 15
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=95.52 E-value=1.4 Score=42.04 Aligned_cols=222 Identities=14% Similarity=0.089 Sum_probs=131.7
Q ss_pred CcchHHHHHHHHhhhhhcccchhhHHhhhhchHHHHHHHHHhhcCCCCCCCCChhhhhHHHHHHHHHHHHhcCc-hhhhh
Q 042013 49 NPDLRENALLELSKNKELFQDLAPFVWNSFGTIAALIQEIVSIYPVLSPPNLTPAQSNRVCNALALLQCVASHP-DTRML 127 (321)
Q Consensus 49 ~p~~Re~AL~eLsk~re~~~~La~~LW~S~Gtia~LLQEIisiYp~Lspp~Lt~~~SnRVCnaLaLLQ~vAshp-etR~~ 127 (321)
+++-|+.|+.-|+.--...++....+-.. |.+..|++=+-+ + +. .-..+|+..|-.++.+. .....
T Consensus 186 ~~~vr~~A~~aL~~l~~~~~~~~~~~~~~-~~l~~L~~ll~~-------~--~~---~v~~~a~~~L~~L~~~~~~~~~~ 252 (530)
T 1wa5_B 186 SVEVKEQAIWALGNVAGDSTDYRDYVLQC-NAMEPILGLFNS-------N--KP---SLIRTATWTLSNLCRGKKPQPDW 252 (530)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHT-TCHHHHHHGGGS-------C--CH---HHHHHHHHHHHHHHCCSSSCCCH
T ss_pred CHHHHHHHHHHHHHHhCCCccchHHHHHc-CcHHHHHHHhcc-------C--CH---HHHHHHHHHHHHHhCCCCCCCcH
Confidence 56667777776665443333333333333 666666554322 1 11 11234555556666654 33333
Q ss_pred hhhhccccccccccccccCCCCcchhhhhhhhhhhhhcccCchHHHHHHhhhchhhhhhhhccccchhhHHHHHHHHHHH
Q 042013 128 FLNAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKVDDTEVISFLLSTEIIPLCLRTMEMGSELSKTVATFIVQKI 207 (321)
Q Consensus 128 FL~a~iplyLyPfL~ttsk~r~~E~LRLtSLGVIgaLvK~dd~evI~fLL~tEiiPLCLriME~GselSKtvAtfIlqKI 207 (321)
.....+.-.|..+|.. +.+.+|...+++++.|... .++.+..+....++|..+..+..++.-.+.-|..++..|
T Consensus 253 ~~~~~~l~~L~~lL~~-----~d~~v~~~a~~~L~~L~~~-~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l 326 (530)
T 1wa5_B 253 SVVSQALPTLAKLIYS-----MDTETLVDACWAISYLSDG-PQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 326 (530)
T ss_dssp HHHGGGHHHHHHHTTC-----CCHHHHHHHHHHHHHHHSS-CHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHcC-----CCHHHHHHHHHHHHHHhCC-CHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHH
Confidence 3444544455556643 2378999999999999865 455677778889999999999998888888888888887
Q ss_pred hccccc-hhhhhhhhhHHHHHHHHHHHHHHHHhhCCChhhHHHHHHHHHHhhC-ChhhHHHHHhcCCcccchhhhhhhh-
Q 042013 208 LLDDVG-LDYICTTAERFFAVGRVLGNMVAALAEQPSSRLLKHIIRCYLRLSD-NPRACDALRSCLPDMLRDATFSSCL- 284 (321)
Q Consensus 208 L~dd~G-L~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiirCYlRLs~-n~rar~aL~~~LP~~Lrd~~f~~~l- 284 (321)
...+.. ...+.. ..++..++. +...+++.+-+..+++--.|+. ++..+..+-. ..+-.. +..++
T Consensus 327 ~~~~~~~~~~~~~--------~~~l~~L~~-lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~---~~~l~~-L~~lL~ 393 (530)
T 1wa5_B 327 VTGNDLQTQVVIN--------AGVLPALRL-LLSSPKENIKKEACWTISNITAGNTEQIQAVID---ANLIPP-LVKLLE 393 (530)
T ss_dssp TTSCHHHHHHHHH--------TTHHHHHHH-HTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH---TTCHHH-HHHHHH
T ss_pred HcCCHHHHHHHHH--------cchHHHHHH-HHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH---CCCHHH-HHHHHh
Confidence 654321 111110 123444443 3456689999999999999986 4444433321 111111 11122
Q ss_pred cCCHHHHHHHHHHHHHhC
Q 042013 285 REDPTTRRWLQQLLHNVG 302 (321)
Q Consensus 285 ~~D~~~k~~l~qLl~nl~ 302 (321)
.+|+.++..-...+.|+.
T Consensus 394 ~~~~~v~~~a~~aL~~l~ 411 (530)
T 1wa5_B 394 VAEYKTKKEACWAISNAS 411 (530)
T ss_dssp HSCHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHH
Confidence 357788887777777774
No 16
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=95.33 E-value=1.3 Score=41.34 Aligned_cols=203 Identities=10% Similarity=0.028 Sum_probs=121.1
Q ss_pred HHHHHHhcC--CcchHHHHHHHHhhhhhcccchhhHHhhhhchHHHHHHHHHhhcCCCCCCCCChhhhhHHHHHHHHHHH
Q 042013 40 AEHLVLDLS--NPDLRENALLELSKNKELFQDLAPFVWNSFGTIAALIQEIVSIYPVLSPPNLTPAQSNRVCNALALLQC 117 (321)
Q Consensus 40 v~q~I~~L~--~p~~Re~AL~eLsk~re~~~~La~~LW~S~Gtia~LLQEIisiYp~Lspp~Lt~~~SnRVCnaLaLLQ~ 117 (321)
+-.++.-|. +++.|+.|+..|.+--..-+ -...+....|.+..|++-+.+- + + ..-.-++...|..
T Consensus 19 i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~-~~~~~~~~~~~i~~Lv~~L~~~------~--~---~~~~~~a~~~L~~ 86 (529)
T 1jdh_A 19 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEA-SRHAIMRSPQMVSAIVRTMQNT------N--D---VETARCTAGTLHN 86 (529)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHHTSHH-HHHHHHTCHHHHHHHHHHHHHC------C--C---HHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHcCCc-cHHHHHhCcchHHHHHHHHhcC------C--C---HHHHHHHHHHHHH
Confidence 334444343 66778888877765432211 1223445567777777655431 0 0 1122355666667
Q ss_pred HhcCchhhhhhhhhccccccccccccccCCCCcchhhhhhhhhhhhhcccCchHHHHHHhhhchhhhhhhhccccchhhH
Q 042013 118 VASHPDTRMLFLNAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKVDDTEVISFLLSTEIIPLCLRTMEMGSELSK 197 (321)
Q Consensus 118 vAshpetR~~FL~a~iplyLyPfL~ttsk~r~~E~LRLtSLGVIgaLvK~dd~evI~fLL~tEiiPLCLriME~GselSK 197 (321)
++.+++.|..+.++...-.|..+|+. +.+.+|...+++++.+...++ +....+.+...+|..++.+..++.-.+
T Consensus 87 ls~~~~~~~~i~~~g~i~~L~~lL~~-----~~~~v~~~a~~~L~~l~~~~~-~~~~~i~~~g~i~~L~~ll~~~~~~~~ 160 (529)
T 1jdh_A 87 LSHHREGLLAIFKSGGIPALVKMLGS-----PVDSVLFYAITTLHNLLLHQE-GAKMAVRLAGGLQKMVALLNKTNVKFL 160 (529)
T ss_dssp HTTSHHHHHHHHHTTHHHHHHHHTTC-----SCHHHHHHHHHHHHHHHHHCT-THHHHHHHHTHHHHHHHGGGCCCHHHH
T ss_pred HHcCchhHHHHHHcCCHHHHHHHHcC-----CCHHHHHHHHHHHHHHhcCCc-chHHHHHHcCCHHHHHHHHhcCCHHHH
Confidence 89999999999988766666677754 237789999999999887533 345566678999999999999887777
Q ss_pred HHHHHHHHHHhcc-ccchhhhhhhhhHHHHHHHHHHHHHHHHhhCCChhhHHHHHHHHHHhhCChhhHHHHH
Q 042013 198 TVATFIVQKILLD-DVGLDYICTTAERFFAVGRVLGNMVAALAEQPSSRLLKHIIRCYLRLSDNPRACDALR 268 (321)
Q Consensus 198 tvAtfIlqKIL~d-d~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiirCYlRLs~n~rar~aL~ 268 (321)
..|...+..+-.+ +.+..-+++. ..+..++.-+...........+.++-..|+.++..|..+.
T Consensus 161 ~~~~~~L~~la~~~~~~~~~i~~~--------~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 224 (529)
T 1jdh_A 161 AITTDCLQILAYGNQESKLIILAS--------GGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIV 224 (529)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHT--------THHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHC--------CCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHH
Confidence 7777777766543 2222222221 1222333333333333444455555555666655555443
No 17
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=95.09 E-value=0.19 Score=45.89 Aligned_cols=146 Identities=16% Similarity=0.057 Sum_probs=96.4
Q ss_pred CcchHHHHHHHHhhhhhcccchhhHHhhhhchHHHHHHHHHhhcCCCCCCCCChhhhhHHHHHHHHHHHHhc-Cchhhhh
Q 042013 49 NPDLRENALLELSKNKELFQDLAPFVWNSFGTIAALIQEIVSIYPVLSPPNLTPAQSNRVCNALALLQCVAS-HPDTRML 127 (321)
Q Consensus 49 ~p~~Re~AL~eLsk~re~~~~La~~LW~S~Gtia~LLQEIisiYp~Lspp~Lt~~~SnRVCnaLaLLQ~vAs-hpetR~~ 127 (321)
+++.|+.|+.-|+.--...++....+... |.+..|++= +..+ ...-...|+..|..++. +++.+..
T Consensus 247 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-~~l~~L~~l-------l~~~-----~~~vr~~a~~~L~~l~~~~~~~~~~ 313 (450)
T 2jdq_A 247 DYKVVSPALRAVGNIVTGDDIQTQVILNC-SALQSLLHL-------LSSP-----KESIKKEACWTISNITAGNRAQIQT 313 (450)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHHHHHHHTT-THHHHHHHH-------TTCS-----SHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred chhHHHHHHHHHHHHhhCChHHHHHHHHC-ccHHHHHHH-------HcCC-----CHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 34456666666655433333332233332 555554432 2222 11222345555666664 6777888
Q ss_pred hhhhccccccccccccccCCCCcchhhhhhhhhhhhhcccCchHHHHHHhhhchhhhhhhhccccchhhHHHHHHHHHHH
Q 042013 128 FLNAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKVDDTEVISFLLSTEIIPLCLRTMEMGSELSKTVATFIVQKI 207 (321)
Q Consensus 128 FL~a~iplyLyPfL~ttsk~r~~E~LRLtSLGVIgaLvK~dd~evI~fLL~tEiiPLCLriME~GselSKtvAtfIlqKI 207 (321)
++++++.-.|...|.. +...+|....++++.+....+++.+.++.+..++|..++.++.++.--+..|...+..+
T Consensus 314 ~~~~~~l~~L~~~l~~-----~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l 388 (450)
T 2jdq_A 314 VIDANIFPALISILQT-----AEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENI 388 (450)
T ss_dssp HHHTTHHHHHHHHHHH-----SCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHhc-----CCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 8887766666666653 24578999999999998876788899999999999999999998877788888888887
Q ss_pred hcccc
Q 042013 208 LLDDV 212 (321)
Q Consensus 208 L~dd~ 212 (321)
+....
T Consensus 389 ~~~~~ 393 (450)
T 2jdq_A 389 LRLGE 393 (450)
T ss_dssp HHHHH
T ss_pred HHhch
Confidence 76543
No 18
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=94.44 E-value=1.4 Score=42.66 Aligned_cols=181 Identities=9% Similarity=0.178 Sum_probs=116.9
Q ss_pred CcchHHHHHHHHhhhhhcccchhhHHhhhhchHHHHHHHHHhhcCCCCCCCCChhhhhHHHHHHHHHHHHhcC-chhhhh
Q 042013 49 NPDLRENALLELSKNKELFQDLAPFVWNSFGTIAALIQEIVSIYPVLSPPNLTPAQSNRVCNALALLQCVASH-PDTRML 127 (321)
Q Consensus 49 ~p~~Re~AL~eLsk~re~~~~La~~LW~S~Gtia~LLQEIisiYp~Lspp~Lt~~~SnRVCnaLaLLQ~vAsh-petR~~ 127 (321)
+++.+++|..-|+.--+..++....+-.+ |.+..|++=+- .+ ...-..+++..|-.++++ ++.+..
T Consensus 245 ~~~v~~~A~~aL~~L~~~~~~~~~~i~~~-g~i~~Lv~lL~-------~~-----~~~v~~~al~aL~nl~~~~~~~~~~ 311 (510)
T 3ul1_B 245 DPEVLADSCWAISYLTDGPNERIEMVVKK-GVVPQLVKLLG-------AT-----ELPIVTPALRAIGNIVTGTDEQTQK 311 (510)
T ss_dssp CHHHHHHHHHHHHHHTSSCHHHHHHHHTT-TCHHHHHHHHT-------CS-----CHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhchhhhHHHHHhc-ccchhhhhhhc-------CC-----ChhhhhHHHHHHHHhhcCCHHHHHH
Confidence 55667777777766554444444444444 77776655332 11 122334566666666554 566777
Q ss_pred hhhhccccccccccccccCCCCcchhhhhhhhhhhhhcccCchHHHHHHhhhchhhhhhhhccccchhhHHHHHHHHHHH
Q 042013 128 FLNAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKVDDTEVISFLLSTEIIPLCLRTMEMGSELSKTVATFIVQKI 207 (321)
Q Consensus 128 FL~a~iplyLyPfL~ttsk~r~~E~LRLtSLGVIgaLvK~dd~evI~fLL~tEiiPLCLriME~GselSKtvAtfIlqKI 207 (321)
++++...-.|..+|.. +-+.+|-...++++-+... +++-+..+.+..++|.+++.++.|+.-.|.-|...|..+
T Consensus 312 i~~~g~l~~L~~LL~~-----~~~~v~~~A~~aL~nl~a~-~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl 385 (510)
T 3ul1_B 312 VIDAGALAVFPSLLTN-----PKTNIQKEATWTMSNITAG-RQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNY 385 (510)
T ss_dssp HHHTTGGGGCC-CTTC-----SSHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HhhccchHHHHHHhcC-----CCHHHHHHHHHHHHHHHcC-cHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 8888877777777753 3467888889999888754 667778888999999999999999999999999999887
Q ss_pred hcc--ccchhhhhhhhhHHHHHHHHHHHHHHHHhhCCChhhHHHHHHHHHHh
Q 042013 208 LLD--DVGLDYICTTAERFFAVGRVLGNMVAALAEQPSSRLLKHIIRCYLRL 257 (321)
Q Consensus 208 L~d--d~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiirCYlRL 257 (321)
..+ .....|+++. .++..++ .+.+.+++++.+.+..+-..+
T Consensus 386 ~~~~~~~~~~~L~~~--------g~i~~L~-~LL~~~d~~i~~~~L~aL~ni 428 (510)
T 3ul1_B 386 TSGGTVEQIVYLVHC--------GIIEPLM-NLLSAKDTKIIQVILDAISNI 428 (510)
T ss_dssp HHHCCHHHHHHHHHT--------TCHHHHH-HGGGCSCHHHHHHHHHHHHHH
T ss_pred HccCCHHHHHHHHHC--------CCHHHHH-HHhcCCCHHHHHHHHHHHHHH
Confidence 652 2333333221 1233332 234567777777776665443
No 19
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=93.84 E-value=1.9 Score=41.79 Aligned_cols=181 Identities=9% Similarity=0.188 Sum_probs=117.9
Q ss_pred CcchHHHHHHHHhhhhhcccchhhHHhhhhchHHHHHHHHHhhcCCCCCCCCChhhhhHHHHHHHHHHHHhcC-chhhhh
Q 042013 49 NPDLRENALLELSKNKELFQDLAPFVWNSFGTIAALIQEIVSIYPVLSPPNLTPAQSNRVCNALALLQCVASH-PDTRML 127 (321)
Q Consensus 49 ~p~~Re~AL~eLsk~re~~~~La~~LW~S~Gtia~LLQEIisiYp~Lspp~Lt~~~SnRVCnaLaLLQ~vAsh-petR~~ 127 (321)
+++.+.+|...|+.--+..++....+-.. |.+..|++=+ ..+ ...-...++..|-.++++ ++.+..
T Consensus 264 ~~~v~~~a~~aL~~l~~~~~~~~~~v~~~-g~i~~Lv~lL-------~~~-----~~~v~~~a~~aL~nl~~~~~~~~~~ 330 (529)
T 3tpo_A 264 DPEVLADSCWAISYLTDGPNERIEMVVKK-GVVPQLVKLL-------GAT-----ELPIVTPALRAIGNIVTGTDEQTQK 330 (529)
T ss_dssp CHHHHHHHHHHHHHHHSSCHHHHHHHHTT-TCHHHHHHHH-------TCS-----CHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhhhhhHHHHHhc-cchHHHHHHh-------cCC-----ChhHHHHHHHHHHHHHccchHHHHH
Confidence 55667777777766554444444444443 7777665433 111 122334566666666655 566778
Q ss_pred hhhhccccccccccccccCCCCcchhhhhhhhhhhhhcccCchHHHHHHhhhchhhhhhhhccccchhhHHHHHHHHHHH
Q 042013 128 FLNAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKVDDTEVISFLLSTEIIPLCLRTMEMGSELSKTVATFIVQKI 207 (321)
Q Consensus 128 FL~a~iplyLyPfL~ttsk~r~~E~LRLtSLGVIgaLvK~dd~evI~fLL~tEiiPLCLriME~GselSKtvAtfIlqKI 207 (321)
++++...-.|..+|+. +-+.+|-...++++-+... +++.+..+.+..++|..++.+..|+.-.|.-|...|..+
T Consensus 331 i~~~g~l~~L~~LL~~-----~~~~i~~~a~~aL~nl~~~-~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl 404 (529)
T 3tpo_A 331 VIDAGALAVFPSLLTN-----PKTNIQKEATWTMSNITAG-RQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNY 404 (529)
T ss_dssp HHHTTGGGGHHHHTTC-----SSHHHHHHHHHHHHHHHTS-CHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HhhcccHHHHHHHHcC-----CCHHHHHHHHHHHHHHhcc-cHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 8888887777777763 2357888888888888754 667778888999999999999999999999999988887
Q ss_pred hcc--ccchhhhhhhhhHHHHHHHHHHHHHHHHhhCCChhhHHHHHHHHHHh
Q 042013 208 LLD--DVGLDYICTTAERFFAVGRVLGNMVAALAEQPSSRLLKHIIRCYLRL 257 (321)
Q Consensus 208 L~d--d~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiirCYlRL 257 (321)
..+ .....|++.. .++..++. |.+.++++++..+..+-..+
T Consensus 405 ~~~~~~~~~~~l~~~--------g~i~~L~~-LL~~~d~~i~~~~L~aL~ni 447 (529)
T 3tpo_A 405 TSGGTVEQIVYLVHC--------GIIEPLMN-LLSAKDTKIIQVILDAISNI 447 (529)
T ss_dssp HHHSCHHHHHHHHHT--------TCHHHHHH-GGGCSCHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHC--------cCHHHHHH-HhcCCCHHHHHHHHHHHHHH
Confidence 652 2333333221 13333333 33567788777776665443
No 20
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=93.54 E-value=0.85 Score=45.17 Aligned_cols=182 Identities=13% Similarity=0.062 Sum_probs=113.3
Q ss_pred CcchHHHHHHHHhhhhhcccchhhHHhhhhchHHHHHHHHHhhcCCCCCCCCChhhhhHHHHHHHHHHHHhc-Cchhhhh
Q 042013 49 NPDLRENALLELSKNKELFQDLAPFVWNSFGTIAALIQEIVSIYPVLSPPNLTPAQSNRVCNALALLQCVAS-HPDTRML 127 (321)
Q Consensus 49 ~p~~Re~AL~eLsk~re~~~~La~~LW~S~Gtia~LLQEIisiYp~Lspp~Lt~~~SnRVCnaLaLLQ~vAs-hpetR~~ 127 (321)
+++.|+.|+.-|.+--...++-...+-. .|.+..|++=+-+ + + ..-...++..|..+++ +++.|..
T Consensus 111 ~~~v~~~A~~aL~nL~~~~~~~~~~v~~-~g~i~~Lv~lL~~-------~--~---~~~~~~a~~~L~~La~~~~~~~~~ 177 (644)
T 2z6h_A 111 VDSVLFYAITTLHNLLLHQEGAKMAVRL-AGGLQKMVALLNK-------T--N---VKFLAITTDCLQILAYGNQESKLI 177 (644)
T ss_dssp SHHHHHHHHHHHHHHHHHSTTHHHHHHH-TTHHHHHHHGGGC-------C--C---HHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhCcchhHHHHHH-CCChHHHHHHHCc-------C--C---HHHHHHHHHHHHHHHhcCcHHHHH
Confidence 3445666665555432222222222222 3666666554322 1 1 1222344556777775 8899999
Q ss_pred hhhhccccccccccccccCCCCcchhhhhhhhhhhhhcccCchHHHHHHhhhchhhhhhhhccccchhhHHHHHHHHHHH
Q 042013 128 FLNAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKVDDTEVISFLLSTEIIPLCLRTMEMGSELSKTVATFIVQKI 207 (321)
Q Consensus 128 FL~a~iplyLyPfL~ttsk~r~~E~LRLtSLGVIgaLvK~dd~evI~fLL~tEiiPLCLriME~GselSKtvAtfIlqKI 207 (321)
+.++...--|-.+|... ..|.++-..+++++.|.. +++.-..+.+...+|..++.++.++.-.+..|..++..+
T Consensus 178 i~~~g~v~~Lv~lL~~~----~~~~~~~~a~~~L~nLs~--~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL 251 (644)
T 2z6h_A 178 ILASGGPQALVNIMRTY----TYEKLLWTTSRVLKVLSV--CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL 251 (644)
T ss_dssp HHHTTHHHHHHHHHTTC----CCHHHHHHHHHHHHHHTT--CTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHH
T ss_pred HHHcCChHHHHHHHHcC----ChHHHHHHHHHHHHHHhc--CcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 99888766666666543 357888888888888874 556677888889999999999998888888888888887
Q ss_pred hccccchhhhhhhhhHHHHHHHHHHHHHHHHhhCCChhhHHHHHHHHHHhhCC
Q 042013 208 LLDDVGLDYICTTAERFFAVGRVLGNMVAALAEQPSSRLLKHIIRCYLRLSDN 260 (321)
Q Consensus 208 L~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiirCYlRLs~n 260 (321)
-.+.. ++..+..++..++. +....++.+.+...++...|+.+
T Consensus 252 ~~~~~----------~~~~~~~~i~~Lv~-lL~~~d~~v~~~a~~aL~~L~~~ 293 (644)
T 2z6h_A 252 SDAAT----------KQEGMEGLLGTLVQ-LLGSDDINVVTCAAGILSNLTCN 293 (644)
T ss_dssp GGGCT----------TCCSCHHHHHHHHH-HTTCSCHHHHHHHHHHHHHHHTT
T ss_pred hhcch----------hhhhhhhHHHHHHH-HHcCCCHHHHHHHHHHHHHHHcC
Confidence 54321 11122233333333 33456777777777777777765
No 21
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=93.22 E-value=0.88 Score=43.61 Aligned_cols=149 Identities=12% Similarity=0.056 Sum_probs=109.8
Q ss_pred HHHHHHHHHHHHhcCc-hhhhhhhhhccccccccccccccCCCCcchhhhhhhhhhhhhcccCchHHHHHHhhhchhhhh
Q 042013 107 RVCNALALLQCVASHP-DTRMLFLNAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKVDDTEVISFLLSTEIIPLC 185 (321)
Q Consensus 107 RVCnaLaLLQ~vAshp-etR~~FL~a~iplyLyPfL~ttsk~r~~E~LRLtSLGVIgaLvK~dd~evI~fLL~tEiiPLC 185 (321)
-.++|...|+-++.+. +.|..+.++...-.|-.+|.. +.+.++....+.++-|... +++.-..+.+...||..
T Consensus 18 ~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s-----~~~~~~~~A~~aL~nLa~~-~~~~k~~i~~~G~i~~L 91 (457)
T 1xm9_A 18 YQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRS-----PNQNVQQAAAGALRNLVFR-STTNKLETRRQNGIREA 91 (457)
T ss_dssp HHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTS-----SCHHHHHHHHHHHHHHHSS-CHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcC-----CCHHHHHHHHHHHHHHhcC-CHHHHHHHHHcCCHHHH
Confidence 3467888888888654 678788888876666677762 3567888889999888874 45666677789999999
Q ss_pred hhhcc-ccchhhHHHHHHHHHHHhccccchhhhhhhhhHHHHHHHHHHHHHHHHh---------------hCCChhhHHH
Q 042013 186 LRTME-MGSELSKTVATFIVQKILLDDVGLDYICTTAERFFAVGRVLGNMVAALA---------------EQPSSRLLKH 249 (321)
Q Consensus 186 LriME-~GselSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~---------------~~ps~RLLKh 249 (321)
++.+. .+++-.|--|+..+..|-.++..-..+.. .++..+|.-+. +..++.++++
T Consensus 92 v~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~---------g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~ 162 (457)
T 1xm9_A 92 VSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA---------DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFN 162 (457)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHH---------HHHHHHHHHTTHHHHTCC---------CCCHHHHHH
T ss_pred HHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHh---------ccHHHHHHHHhccccccccCccchhcccccHHHHHH
Confidence 99998 88888888899999998887654444432 22222222221 1146789999
Q ss_pred HHHHHHHhhCChhhHHHHHhc
Q 042013 250 IIRCYLRLSDNPRACDALRSC 270 (321)
Q Consensus 250 iirCYlRLs~n~rar~aL~~~ 270 (321)
..++-..||.+|..|.++.++
T Consensus 163 a~~aL~nLs~~~~~~~~i~~~ 183 (457)
T 1xm9_A 163 ATGCLRNLSSADAGRQTMRNY 183 (457)
T ss_dssp HHHHHHHHTTSHHHHHHHTTS
T ss_pred HHHHHHHHccCHHHHHHHHHc
Confidence 999999999999999988854
No 22
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=93.01 E-value=4.4 Score=39.14 Aligned_cols=229 Identities=14% Similarity=0.100 Sum_probs=132.5
Q ss_pred CcchHHHHHHHHhhhhhcccchhhHHhhhhchHHHHHHHHHhhcCCCCCCCCChhhhhHHHHHHHHHHHHhcCchhhhhh
Q 042013 49 NPDLRENALLELSKNKELFQDLAPFVWNSFGTIAALIQEIVSIYPVLSPPNLTPAQSNRVCNALALLQCVASHPDTRMLF 128 (321)
Q Consensus 49 ~p~~Re~AL~eLsk~re~~~~La~~LW~S~Gtia~LLQEIisiYp~Lspp~Lt~~~SnRVCnaLaLLQ~vAshpetR~~F 128 (321)
+++-|+.|+.-|+.--..-++....+... |.+..|++=+ ..+..+.....-+.++...+-.++.+.+-...+
T Consensus 175 ~~~v~e~A~~aL~nLa~~~~~~r~~i~~~-g~i~~Ll~lL-------~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~ 246 (529)
T 3tpo_A 175 HAHISEQAVWALGNIAGAGSAFRDLVIKH-GAIDPLLALL-------AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPL 246 (529)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHT-TCHHHHHHTT-------CSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCH
T ss_pred CHHHHHHHHHHHHHHhccCHHHHHHHHHc-CCcHHHHHHH-------hccchhHhHHHHHHHHHHHHHHHHhcccchhhH
Confidence 45668887776665543345555555554 7777776533 222222222223345555566666665443333
Q ss_pred hh-hccccccccccccccCCCCcchhhhhhhhhhhhhcccCchHHHHHHhhhchhhhhhhhccccchhhHHHHHHHHHHH
Q 042013 129 LN-AHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKVDDTEVISFLLSTEIIPLCLRTMEMGSELSKTVATFIVQKI 207 (321)
Q Consensus 129 L~-a~iplyLyPfL~ttsk~r~~E~LRLtSLGVIgaLvK~dd~evI~fLL~tEiiPLCLriME~GselSKtvAtfIlqKI 207 (321)
.. ..+.-.|...|+ .+.+.++....+.++.+... +.+.+.......++|.....+..++.-.++-|...+..|
T Consensus 247 ~~~~~~lp~L~~LL~-----~~~~~v~~~a~~aL~~l~~~-~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl 320 (529)
T 3tpo_A 247 DAVEQILPTLVRLLH-----HNDPEVLADSCWAISYLTDG-PNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 320 (529)
T ss_dssp HHHHHHHHHHHHHTT-----SSCHHHHHHHHHHHHHHHSS-CHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHhc-----CCcHHHHHHHHHHHHHhhhh-hhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHH
Confidence 22 222112223332 23456788888888888764 456777788899999999999999999999999999998
Q ss_pred hccccchhhhhhhhhHHHHHHHHHHHHHHHHhhCCChhhHHHHHHHHHHhhC-ChhhHHHHHhcCCcccchhhhhhhhcC
Q 042013 208 LLDDVGLDYICTTAERFFAVGRVLGNMVAALAEQPSSRLLKHIIRCYLRLSD-NPRACDALRSCLPDMLRDATFSSCLRE 286 (321)
Q Consensus 208 L~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiirCYlRLs~-n~rar~aL~~~LP~~Lrd~~f~~~l~~ 286 (321)
...+.......... .++. .+..+...+++.+-+...++-..|+. ++..+.++.+. .+-..-...+-.+
T Consensus 321 ~~~~~~~~~~i~~~-------g~l~-~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~---g~i~~Lv~lL~~~ 389 (529)
T 3tpo_A 321 VTGTDEQTQKVIDA-------GALA-VFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNH---GLVPFLVGVLSKA 389 (529)
T ss_dssp TTSCHHHHHHHHHT-------TGGG-GHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHT---THHHHHHHHHHSS
T ss_pred HccchHHHHHHhhc-------ccHH-HHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhc---CcHHHHHHHhcCC
Confidence 76543222111100 1122 22334567888899999999999886 55555555532 1111111111245
Q ss_pred CHHHHHHHHHHHHHhC
Q 042013 287 DPTTRRWLQQLLHNVG 302 (321)
Q Consensus 287 D~~~k~~l~qLl~nl~ 302 (321)
+..+++.-...+.|+-
T Consensus 390 ~~~v~~~A~~aL~nl~ 405 (529)
T 3tpo_A 390 DFKTQKAAAWAITNYT 405 (529)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 6666666665666653
No 23
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=93.00 E-value=1.1 Score=42.35 Aligned_cols=161 Identities=11% Similarity=0.050 Sum_probs=114.7
Q ss_pred CChhhhhHHHHHHHHHHHHhcCchhhhhhhhhccccccccccccc------cCCCCcchhhhhhhhhhhhhcccCchHHH
Q 042013 100 LTPAQSNRVCNALALLQCVASHPDTRMLFLNAHIPLYLYPFLNTT------SKSRPFEYLRLTSLGVIGALVKVDDTEVI 173 (321)
Q Consensus 100 Lt~~~SnRVCnaLaLLQ~vAshpetR~~FL~a~iplyLyPfL~tt------sk~r~~E~LRLtSLGVIgaLvK~dd~evI 173 (321)
....--..+|.|+..|+-++.++|.|..+++....-.|-.+|... ........+|-....++.-|.+.++..-.
T Consensus 41 ~~~~~~~~~~~A~~aL~nls~d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~ 120 (354)
T 3nmw_A 41 MPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKA 120 (354)
T ss_dssp CCCGGGGTHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHH
T ss_pred CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence 445556789999999999999999999999999988888888532 11113355777888888888876653222
Q ss_pred HHHhhhchhhhhhhhccccchhhHHHHHHHHHHHhcc--ccchhhhhhhhhHHHHHHHHHHHHHHHHhhCCChhhHHHHH
Q 042013 174 SFLLSTEIIPLCLRTMEMGSELSKTVATFIVQKILLD--DVGLDYICTTAERFFAVGRVLGNMVAALAEQPSSRLLKHII 251 (321)
Q Consensus 174 ~fLL~tEiiPLCLriME~GselSKtvAtfIlqKIL~d--d~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhii 251 (321)
.+--....||..++.+..+++-.|..|...+..+-.. +..-..+. =+..+..+|.-|...+++.+.+...
T Consensus 121 ~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~--------~~G~Ip~Lv~lL~~~~~~~~~~~A~ 192 (354)
T 3nmw_A 121 TLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLR--------EVGSVKALMECALEVKKESTLKSVL 192 (354)
T ss_dssp HHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHH--------HTTHHHHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHH--------HCCCHHHHHHHHhcCCCHHHHHHHH
Confidence 1222456799999999999999999999988877542 11111111 1234566666666677889999999
Q ss_pred HHHHHhhC-ChhhHHHHH
Q 042013 252 RCYLRLSD-NPRACDALR 268 (321)
Q Consensus 252 rCYlRLs~-n~rar~aL~ 268 (321)
++-..||. ++..+..+.
T Consensus 193 ~aL~nLs~~~~~nk~~i~ 210 (354)
T 3nmw_A 193 SALWNLSAHCTENKADIC 210 (354)
T ss_dssp HHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHccChhhhHHHH
Confidence 99999988 655555543
No 24
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=92.67 E-value=2.2 Score=39.30 Aligned_cols=145 Identities=14% Similarity=0.114 Sum_probs=101.5
Q ss_pred CcchHHHHHHHHhhhhhcccchhhHHhhhhchHHHHHHHHHhhcCCCCCCCCChhhhhHHHHHHHHHHHHh-cCchhhhh
Q 042013 49 NPDLRENALLELSKNKELFQDLAPFVWNSFGTIAALIQEIVSIYPVLSPPNLTPAQSNRVCNALALLQCVA-SHPDTRML 127 (321)
Q Consensus 49 ~p~~Re~AL~eLsk~re~~~~La~~LW~S~Gtia~LLQEIisiYp~Lspp~Lt~~~SnRVCnaLaLLQ~vA-shpetR~~ 127 (321)
+++-|+.|..-|+.--...|...-.+= ..|.+..|++=+-+- + ...-|. +|+--|-+++ .+++-...
T Consensus 95 ~~~vr~~Aa~~Lg~ia~~n~~~~~~vv-~~g~l~~Ll~LL~~~------~----~~~v~~-~A~~ALsnl~~~~~~~~~~ 162 (296)
T 1xqr_A 95 AAGLRWRAAQLIGTCSQNVAAIQEQVL-GLGALRKLLRLLDRD------A----CDTVRV-KALFAISCLVREQEAGLLQ 162 (296)
T ss_dssp SHHHHHHHHHHHHHHHTTCHHHHHHHH-HTTHHHHHHHHHHHC------S----CHHHHH-HHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhCCHHHHHHHH-HCCCHHHHHHHHccC------C----CHHHHH-HHHHHHHHHHcCCcHHHHH
Confidence 455688888777765444343333333 338888777655431 1 122233 3333333554 66777888
Q ss_pred hhhhccccccccccccccCCCCcchhhhhhhhhhhhhcccCchHHHHHHhhhchhhhhhhhccccchhhHHHHHHHHHHH
Q 042013 128 FLNAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKVDDTEVISFLLSTEIIPLCLRTMEMGSELSKTVATFIVQKI 207 (321)
Q Consensus 128 FL~a~iplyLyPfL~ttsk~r~~E~LRLtSLGVIgaLvK~dd~evI~fLL~tEiiPLCLriME~GselSKtvAtfIlqKI 207 (321)
|+++...-.|-..|+. +-..+|--+...|+.|... +++.+.++.+..++|.....+..++.-.+..|...|..|
T Consensus 163 ~~~~ggi~~L~~lL~~-----~d~~v~~~A~~aLs~L~~~-~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l 236 (296)
T 1xqr_A 163 FLRLDGFSVLMRAMQQ-----QVQKLKVKSAFLLQNLLVG-HPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSL 236 (296)
T ss_dssp HHHTTHHHHHHHHHHS-----SCHHHHHHHHHHHHHHHHH-CGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHcC-----CCHHHHHHHHHHHHHHHhC-ChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHH
Confidence 9998766667777753 2457888899999999876 778899999999999999999999999999999999999
Q ss_pred hccc
Q 042013 208 LLDD 211 (321)
Q Consensus 208 L~dd 211 (321)
+.+.
T Consensus 237 ~~~~ 240 (296)
T 1xqr_A 237 VTDF 240 (296)
T ss_dssp HTTC
T ss_pred HhCC
Confidence 8773
No 25
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=92.51 E-value=5.8 Score=40.81 Aligned_cols=144 Identities=10% Similarity=0.016 Sum_probs=88.7
Q ss_pred HHHHHHHHHhcCchhhhhhhhhccccccccccccccCCCCcchhhhhhhhhhhhhcccCchHHHHHHhhhchhhhhhhhc
Q 042013 110 NALALLQCVASHPDTRMLFLNAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKVDDTEVISFLLSTEIIPLCLRTM 189 (321)
Q Consensus 110 naLaLLQ~vAshpetR~~FL~a~iplyLyPfL~ttsk~r~~E~LRLtSLGVIgaLvK~dd~evI~fLL~tEiiPLCLriM 189 (321)
+|...|..++.+++.+..+.++...-.|..+|... .+.+|..++++++.|...+ .+....+.+...||..++.+
T Consensus 212 ~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~-----~~~v~~~A~~aL~nLa~~~-~~~~~~v~~~g~v~~Lv~lL 285 (780)
T 2z6g_A 212 CTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSP-----VDSVLFHAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALL 285 (780)
T ss_dssp HHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCS-----CHHHHHHHHHHHHHHHHHS-TTHHHHHHHTTHHHHHHHGG
T ss_pred HHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCC-----CHHHHHHHHHHHHHHhCCC-hhhHHHHHHcCCHHHHHHHH
Confidence 45555666888888888888877665666666533 4789999999999988653 34555666788999999999
Q ss_pred cccchhhHHHHHHHHHHHhc-cccchhhhhhhhhHHHHHHHHHHHHHHHHhhCCChhhHHHHHHHHHHhhCChhhHHHH
Q 042013 190 EMGSELSKTVATFIVQKILL-DDVGLDYICTTAERFFAVGRVLGNMVAALAEQPSSRLLKHIIRCYLRLSDNPRACDAL 267 (321)
Q Consensus 190 E~GselSKtvAtfIlqKIL~-dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiirCYlRLs~n~rar~aL 267 (321)
..++.-.+.+|...+..+-. ++.+..-++.. ..+..+|.-+.............++-..|+.++..+..+
T Consensus 286 ~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~--------~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i 356 (780)
T 2z6g_A 286 NKTNVKFLAITTDCLQILAYGNQESKLIILAS--------GGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAI 356 (780)
T ss_dssp GCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTT--------THHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHhcCChHHHHHHHHc--------CCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHH
Confidence 88776666677777775543 23333333222 112223332222233344445555555555555444443
No 26
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=91.39 E-value=5.5 Score=38.45 Aligned_cols=236 Identities=14% Similarity=0.093 Sum_probs=134.4
Q ss_pred HHHHhcC--CcchHHHHHHHHhhhhhcccchhhHHhhhhchHHHHHHHHHhhcCCCCCCCCChhhhhHHHHHHHHHHHHh
Q 042013 42 HLVLDLS--NPDLRENALLELSKNKELFQDLAPFVWNSFGTIAALIQEIVSIYPVLSPPNLTPAQSNRVCNALALLQCVA 119 (321)
Q Consensus 42 q~I~~L~--~p~~Re~AL~eLsk~re~~~~La~~LW~S~Gtia~LLQEIisiYp~Lspp~Lt~~~SnRVCnaLaLLQ~vA 119 (321)
.+|.-|. +++-|+.|+.-|+.--...++....+-.. |.+..|++=+. .+........-+.++...+-.++
T Consensus 147 ~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~-G~i~~Ll~lL~-------~~~~~~~~~~~~~~a~~~L~nl~ 218 (510)
T 3ul1_B 147 AFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKH-GAIDPLLALLA-------VPDLSTLACGYLRNLTWTLSNLC 218 (510)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHT-TCHHHHHHHTC-------SSCGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHc-CChHHHHHHHH-------hccchhhhHHHHHHHHHHHHHHh
Confidence 3444444 45668887776665443344444455444 77777765432 22211111222335555555666
Q ss_pred cCchhhhhhhh-hccccccccccccccCCCCcchhhhhhhhhhhhhcccCchHHHHHHhhhchhhhhhhhccccchhhHH
Q 042013 120 SHPDTRMLFLN-AHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKVDDTEVISFLLSTEIIPLCLRTMEMGSELSKT 198 (321)
Q Consensus 120 shpetR~~FL~-a~iplyLyPfL~ttsk~r~~E~LRLtSLGVIgaLvK~dd~evI~fLL~tEiiPLCLriME~GselSKt 198 (321)
.+.+.+..+.. ..+.-.|...|+ .+.+.+|....+.++.|.+. +.+.+..+..+.++|.+.+.+..++.-.++
T Consensus 219 ~~~~~~~~~~~~~~~lp~L~~LL~-----~~~~~v~~~A~~aL~~L~~~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~ 292 (510)
T 3ul1_B 219 RNKNPAPPLDAVEQILPTLVRLLH-----HNDPEVLADSCWAISYLTDG-PNERIEMVVKKGVVPQLVKLLGATELPIVT 292 (510)
T ss_dssp CCCSSCCCHHHHHHHHHHHHHHTT-----CSCHHHHHHHHHHHHHHTSS-CHHHHHHHHTTTCHHHHHHHHTCSCHHHHH
T ss_pred hcccchhHHHHHHhHHHHHHHHHh-----cCCHHHHHHHHHHHHHHhhc-hhhhHHHHHhcccchhhhhhhcCCChhhhh
Confidence 66544443322 222222333332 23456888888888888865 456677778899999999999999999999
Q ss_pred HHHHHHHHHhccccchhhhhhhhhHHHHHHHHHHHHHHHHhhCCChhhHHHHHHHHHHhhC-ChhhHHHHHhcCCcccch
Q 042013 199 VATFIVQKILLDDVGLDYICTTAERFFAVGRVLGNMVAALAEQPSSRLLKHIIRCYLRLSD-NPRACDALRSCLPDMLRD 277 (321)
Q Consensus 199 vAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiirCYlRLs~-n~rar~aL~~~LP~~Lrd 277 (321)
-|...+..|...+......... ..++. .+..+...+++.+-+...++...|+. ++..+.++.+. .+-.
T Consensus 293 ~al~aL~nl~~~~~~~~~~i~~-------~g~l~-~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~---g~i~ 361 (510)
T 3ul1_B 293 PALRAIGNIVTGTDEQTQKVID-------AGALA-VFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNH---GLVP 361 (510)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHH-------TTGGG-GCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHT---THHH
T ss_pred HHHHHHHHhhcCCHHHHHHHhh-------ccchH-HHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhc---CCHH
Confidence 9999988886554322111000 00111 11234467888888999999999876 45555555431 1111
Q ss_pred hhhhhhhcCCHHHHHHHHHHHHHhC
Q 042013 278 ATFSSCLREDPTTRRWLQQLLHNVG 302 (321)
Q Consensus 278 ~~f~~~l~~D~~~k~~l~qLl~nl~ 302 (321)
.-...+-.+|..+++.-...+.|+-
T Consensus 362 ~Lv~lL~~~~~~v~~~Aa~aL~Nl~ 386 (510)
T 3ul1_B 362 FLVGVLSKADFKTQKEAAWAITNYT 386 (510)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 1111112456777777666666664
No 27
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=90.64 E-value=1.3 Score=43.74 Aligned_cols=156 Identities=11% Similarity=0.065 Sum_probs=109.7
Q ss_pred hhHHHHHHHHHHHHhcCchhhhhhhhhccccccccccccc------cCCCCcchhhhhhhhhhhhhcccCchHHHHHHhh
Q 042013 105 SNRVCNALALLQCVASHPDTRMLFLNAHIPLYLYPFLNTT------SKSRPFEYLRLTSLGVIGALVKVDDTEVISFLLS 178 (321)
Q Consensus 105 SnRVCnaLaLLQ~vAshpetR~~FL~a~iplyLyPfL~tt------sk~r~~E~LRLtSLGVIgaLvK~dd~evI~fLL~ 178 (321)
-...|+|+..|.-++.+++.|..++++...-.|-.+|... ........++-....++.-|...++.--..+.-.
T Consensus 162 ~~~~~qAv~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~ 241 (458)
T 3nmz_A 162 EHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSM 241 (458)
T ss_dssp TTTTHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHc
Confidence 3567999999999999999999999999888888888521 0111234566777788888877665322212224
Q ss_pred hchhhhhhhhccccchhhHHHHHHHHHHHhccccchhhhhhhhhHHHHHH--HHHHHHHHHHhhCCChhhHHHHHHHHHH
Q 042013 179 TEIIPLCLRTMEMGSELSKTVATFIVQKILLDDVGLDYICTTAERFFAVG--RVLGNMVAALAEQPSSRLLKHIIRCYLR 256 (321)
Q Consensus 179 tEiiPLCLriME~GselSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~--~vL~~mV~~l~~~ps~RLLKhiirCYlR 256 (321)
...||..++.+..+++-.|.-|...+..+-..+ ..+.-.+|. .++..+|.-|...+++.+.+.+.++-..
T Consensus 242 ~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~--------~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~n 313 (458)
T 3nmz_A 242 KGCMRALVAQLKSESEDLQQVIASVLRNLSWRA--------DVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWN 313 (458)
T ss_dssp HHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSC--------CHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCC--------CHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 667999999999999999999998887764321 011122222 3566777766677788999999999888
Q ss_pred hhC-ChhhHHHHH
Q 042013 257 LSD-NPRACDALR 268 (321)
Q Consensus 257 Ls~-n~rar~aL~ 268 (321)
||. ++..+..+.
T Consensus 314 Ls~~~~~nk~~I~ 326 (458)
T 3nmz_A 314 LSAHCTENKADIC 326 (458)
T ss_dssp HHHHCHHHHHHHH
T ss_pred HccCCHHHHHHHH
Confidence 887 655555543
No 28
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=89.44 E-value=9.7 Score=39.16 Aligned_cols=143 Identities=14% Similarity=0.134 Sum_probs=97.6
Q ss_pred HHHHHHHHHHhcCchhhhhhhhhcccccccccccccc-----------------CCCCcchhhhhhhhhhhhhcccCchH
Q 042013 109 CNALALLQCVASHPDTRMLFLNAHIPLYLYPFLNTTS-----------------KSRPFEYLRLTSLGVIGALVKVDDTE 171 (321)
Q Consensus 109 CnaLaLLQ~vAshpetR~~FL~a~iplyLyPfL~tts-----------------k~r~~E~LRLtSLGVIgaLvK~dd~e 171 (321)
-.|...|--++.+++.+..++++.+.-.|--.|...+ .....|.+|...+|.++.|.. +++
T Consensus 507 ~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~--~~~ 584 (780)
T 2z6g_A 507 KATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILAR--DIH 584 (780)
T ss_dssp HHHHHHHHHHHSSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTT--SHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhc--Chh
Confidence 3555666677889988888887775444444443211 111346788888999998875 355
Q ss_pred HHHHHhhhchhhhhhhhccccchhhHHHHHHHHHHHhccccchhhhhhhhhHHHHHHHHHHHHHHHHhhCCChhhHHHHH
Q 042013 172 VISFLLSTEIIPLCLRTMEMGSELSKTVATFIVQKILLDDVGLDYICTTAERFFAVGRVLGNMVAALAEQPSSRLLKHII 251 (321)
Q Consensus 172 vI~fLL~tEiiPLCLriME~GselSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhii 251 (321)
....+.....||.....+..+++-.+..|...+..+..+..+-..+.+ ..++.. +..+...+++.+-+...
T Consensus 585 ~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~--------~g~i~~-L~~Ll~~~~~~Vr~~A~ 655 (780)
T 2z6g_A 585 NRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEA--------EGATAP-LTELLHSRNEGVATYAA 655 (780)
T ss_dssp HHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTSHHHHHHHHH--------TTCHHH-HHHGGGCSCHHHHHHHH
T ss_pred hHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHHHHHHHH--------CCCHHH-HHHHHcCCCHHHHHHHH
Confidence 555667889999999999999999999999999888765433221111 112222 23456778888989999
Q ss_pred HHHHHhhCChh
Q 042013 252 RCYLRLSDNPR 262 (321)
Q Consensus 252 rCYlRLs~n~r 262 (321)
.+-.+++++..
T Consensus 656 ~aL~~l~~~~~ 666 (780)
T 2z6g_A 656 AVLFRMSEDKP 666 (780)
T ss_dssp HHHHHHHTTSC
T ss_pred HHHHHHHcCCh
Confidence 99999988764
No 29
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=89.32 E-value=2.6 Score=39.84 Aligned_cols=144 Identities=13% Similarity=0.097 Sum_probs=99.5
Q ss_pred CcchHHH---HHHHHhh-hhhcccchhhHHhhhhchHHHHHHHHHhhcCCCCCCCCChhhhhHHHHHHHHHHHHhc----
Q 042013 49 NPDLREN---ALLELSK-NKELFQDLAPFVWNSFGTIAALIQEIVSIYPVLSPPNLTPAQSNRVCNALALLQCVAS---- 120 (321)
Q Consensus 49 ~p~~Re~---AL~eLsk-~re~~~~La~~LW~S~Gtia~LLQEIisiYp~Lspp~Lt~~~SnRVCnaLaLLQ~vAs---- 120 (321)
+++.+++ ||..||. .++. ...+-..-|.+..|++=+.+-.+. ++ ..-+-++.+.|-.+++
T Consensus 184 ~~~~~~~A~~aL~nLs~~~~~n----k~~i~~~~Gai~~Lv~lL~~~~~~---~~-----~~v~~~A~~aL~nLs~~~a~ 251 (354)
T 3nmw_A 184 KESTLKSVLSALWNLSAHCTEN----KADICAVDGALAFLVGTLTYRSQT---NT-----LAIIESGGGILRNVSSLIAT 251 (354)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHH----HHHHHHSTTHHHHHHHHTTCCCSS---SC-----CHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHccChhh----hHHHHHhcCcHHHHHHHhccCCCc---cc-----HHHHHHHHHHHHHHHhhccC
Confidence 4566764 5666666 3232 233443458888776655321110 00 0123456666777775
Q ss_pred CchhhhhhhhhccccccccccccccCCCCcchhhhhhhhhhhhhcccCchHHHHHHhhhchhhhhhhhccccchhhHHHH
Q 042013 121 HPDTRMLFLNAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKVDDTEVISFLLSTEIIPLCLRTMEMGSELSKTVA 200 (321)
Q Consensus 121 hpetR~~FL~a~iplyLyPfL~ttsk~r~~E~LRLtSLGVIgaLvK~dd~evI~fLL~tEiiPLCLriME~GselSKtvA 200 (321)
+++.|..++++...-.|--.|... -+.++--..++++.|... +++....+.+...||.....++.+++-.|..|
T Consensus 252 ~~~~~~~i~~~g~i~~Lv~lL~~~-----~~~v~~~A~~aL~nLa~~-~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A 325 (354)
T 3nmw_A 252 NEDHRQILRENNCLQTLLQHLKSH-----SLTIVSNACGTLWNLSAR-NPKDQEALWDMGAVSMLKNLIHSKHKMIAMGS 325 (354)
T ss_dssp CHHHHHHHHTTTHHHHHHHHTTCS-----CHHHHHHHHHHHHHHTSS-CHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHH
T ss_pred CHHHHHHHHHcCCHHHHHHHHcCC-----ChHHHHHHHHHHHHHhCC-CHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHH
Confidence 899999999988766666666532 234777788889888753 67778889999999999999999999999999
Q ss_pred HHHHHHHhcc
Q 042013 201 TFIVQKILLD 210 (321)
Q Consensus 201 tfIlqKIL~d 210 (321)
...+..|..+
T Consensus 326 ~~aL~nL~~~ 335 (354)
T 3nmw_A 326 AAALRNLMAN 335 (354)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHcC
Confidence 9999998876
No 30
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=86.14 E-value=5.3 Score=38.14 Aligned_cols=156 Identities=13% Similarity=0.138 Sum_probs=96.4
Q ss_pred HHHHhcCCcchHHHHHHHHhhh---hhccc-chhhHHhhhhchHHHHHHHHHhhcCCCCCCCCChhhhhHHHHHHHHHHH
Q 042013 42 HLVLDLSNPDLRENALLELSKN---KELFQ-DLAPFVWNSFGTIAALIQEIVSIYPVLSPPNLTPAQSNRVCNALALLQC 117 (321)
Q Consensus 42 q~I~~L~~p~~Re~AL~eLsk~---re~~~-~La~~LW~S~Gtia~LLQEIisiYp~Lspp~Lt~~~SnRVCnaLaLLQ~ 117 (321)
+++.+=.+++.+|.|..-|+.- ...+. .++-..=..-|.+..|++= |..+ ...=..+|..+|+-
T Consensus 290 ~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~L-------L~~~-----~~~v~~~A~~aL~n 357 (457)
T 1xm9_A 290 NLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARL-------LQSG-----NSDVVRSGASLLSN 357 (457)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHH-------TTCS-----CHHHHHHHHHHHHH
T ss_pred HHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHH-------HhCC-----CHhHHHHHHHHHHH
Confidence 3333334678888876666543 11111 1211111123555555432 2222 23445678888888
Q ss_pred HhcCchhhhhhhhhcccccccccccccc-CCCCcchhhhhhhhhhhhhcccCchHHHHHHhhhchhhhhhhhcccc-chh
Q 042013 118 VASHPDTRMLFLNAHIPLYLYPFLNTTS-KSRPFEYLRLTSLGVIGALVKVDDTEVISFLLSTEIIPLCLRTMEMG-SEL 195 (321)
Q Consensus 118 vAshpetR~~FL~a~iplyLyPfL~tts-k~r~~E~LRLtSLGVIgaLvK~dd~evI~fLL~tEiiPLCLriME~G-sel 195 (321)
++.+++.+...-+.-||- |--.|...+ +...-+..-...+++++.+++.+ ++....+.+...+|...++...+ ++-
T Consensus 358 ls~~~~~~~~i~~~~i~~-Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~-~~~~~~i~~~g~l~~L~~L~~~~~~~~ 435 (457)
T 1xm9_A 358 MSRHPLLHRVMGNQVFPE-VTRLLTSHTGNTSNSEDILSSACYTVRNLMASQ-PQLAKQYFSSSMLNNIINLCRSSASPK 435 (457)
T ss_dssp HHTSGGGHHHHHHHTHHH-HHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTC-THHHHHHCCHHHHHHHHHHHHCTTCHH
T ss_pred HhcCHHHHHHHHHhhhHH-HHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcC-HHHHHHHHHcCCHHHHHHHHcCCCcHH
Confidence 899998876544433332 333444332 22223456668999999998764 56777888999999999999999 888
Q ss_pred hHHHHHHHHHHHhccc
Q 042013 196 SKTVATFIVQKILLDD 211 (321)
Q Consensus 196 SKtvAtfIlqKIL~dd 211 (321)
.+..|.-|++.+..+.
T Consensus 436 i~~~A~~~L~~~~~~~ 451 (457)
T 1xm9_A 436 AAEAARLLLSDMWSSK 451 (457)
T ss_dssp HHHHHHHHHHTTSSST
T ss_pred HHHHHHHHHHHHHcch
Confidence 8999999999877653
No 31
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=85.48 E-value=5.9 Score=35.62 Aligned_cols=150 Identities=15% Similarity=0.181 Sum_probs=102.3
Q ss_pred hHHHHHHHHHHHHh-cCchhhhhhhhhccccccccccccccCCCCcchhhhhhhhhhhhhcccCchHHHHHHhhhchhhh
Q 042013 106 NRVCNALALLQCVA-SHPDTRMLFLNAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKVDDTEVISFLLSTEIIPL 184 (321)
Q Consensus 106 nRVCnaLaLLQ~vA-shpetR~~FL~a~iplyLyPfL~ttsk~r~~E~LRLtSLGVIgaLvK~dd~evI~fLL~tEiiPL 184 (321)
...+++.+-+|-++ .+++.|....++.-.-.|--+|.. +.+.++-...|.++-|.+. ++|--..+....-||.
T Consensus 25 ~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s-----~~~~vq~~Aa~aL~nLa~~-~~~nk~~I~~~GaI~~ 98 (233)
T 3tt9_A 25 SRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKV-----QNEDVQRAVCGALRNLVFE-DNDNKLEVAELNGVPR 98 (233)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGC-----CCHHHHHHHHHHHHHHHTT-CHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcC-----CCHHHHHHHHHHHHHHHhC-CHHHHHHHHHcCCHHH
Confidence 45567778889988 467899998888765556666653 3578888999999999874 3344445667889999
Q ss_pred hhhhcc-ccchhhHHHHHHHHHHHhccccchhhhhhhhhHHHHHHHHHHHHHHHH----hh-----------CCChhhHH
Q 042013 185 CLRTME-MGSELSKTVATFIVQKILLDDVGLDYICTTAERFFAVGRVLGNMVAAL----AE-----------QPSSRLLK 248 (321)
Q Consensus 185 CLriME-~GselSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l----~~-----------~ps~RLLK 248 (321)
.++.+. .+++-.|--|+-.+..+=..+.+-.-+ +...+..++.-+ .. ..++.++.
T Consensus 99 Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i---------~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v~~ 169 (233)
T 3tt9_A 99 LLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLM---------ITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFY 169 (233)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHH---------HHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHHHH
T ss_pred HHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHH---------HhccHHHHHHHHhccccCCcccccccccccchHHHHH
Confidence 999997 566666666776666665444432211 111222222211 00 12569999
Q ss_pred HHHHHHHHhhC-ChhhHHHHHhc
Q 042013 249 HIIRCYLRLSD-NPRACDALRSC 270 (321)
Q Consensus 249 hiirCYlRLs~-n~rar~aL~~~ 270 (321)
+...|---||- ++.+|.++++|
T Consensus 170 na~~~L~nLss~~~~~R~~~r~~ 192 (233)
T 3tt9_A 170 NVTGCLRNMSSAGADGRKAMRRC 192 (233)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHTS
T ss_pred HHHHHHHHHhcCCHHHHHHHHHC
Confidence 99999999975 88999999986
No 32
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=84.98 E-value=12 Score=38.03 Aligned_cols=156 Identities=16% Similarity=0.222 Sum_probs=103.4
Q ss_pred hHHHHHHHHHHHHhcCchhhhhhhhhccc-cccccccccccCCCCcchhhhhhhhhhhhhcccCchHHHHHHhhhchhhh
Q 042013 106 NRVCNALALLQCVASHPDTRMLFLNAHIP-LYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKVDDTEVISFLLSTEIIPL 184 (321)
Q Consensus 106 nRVCnaLaLLQ~vAshpetR~~FL~a~ip-lyLyPfL~ttsk~r~~E~LRLtSLGVIgaLvK~dd~evI~fLL~tEiiPL 184 (321)
.|.+.+.| |--++++|++|..+++.++- .-|-+.|. .+-+.+|-.+.|.++-|.-...+++..++...+|+|.
T Consensus 50 ~r~~A~~a-l~~l~~~~~~~~l~~~~~~v~~ll~~lL~-----D~~~~Vr~~A~gaLrnL~~~~g~d~~~~l~~~~il~~ 123 (684)
T 4gmo_A 50 SRTTAAGA-IANIVQDAKCRKLLLREQVVHIVLTETLT-----DNNIDSRAAGWEILKVLAQEEEADFCVHLYRLDVLTA 123 (684)
T ss_dssp HHHHHHHH-HHHHTTSHHHHHHHHHTTHHHHHHHTTTT-----CSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTHHHH
T ss_pred HHHHHHHH-HHHHHcCcHHHHHHHHcCCHHHHHHHHcC-----CCCHHHHHHHHHHHHHHHhhcCchHHHHHHHcChHHH
Confidence 45443332 44567899999999998874 34566664 3456799999999999988888999999999999998
Q ss_pred hhhhccccch-----------hhHHHHHHH---HHHHhccccchhhhhhhhhH-HHHHH--HHHHHHHHHHhh--CCChh
Q 042013 185 CLRTMEMGSE-----------LSKTVATFI---VQKILLDDVGLDYICTTAER-FFAVG--RVLGNMVAALAE--QPSSR 245 (321)
Q Consensus 185 CLriME~Gse-----------lSKtvAtfI---lqKIL~dd~GL~YiC~t~eR-F~av~--~vL~~mV~~l~~--~ps~R 245 (321)
.+..++...+ .+|.-...+ ...++ .-|.+.|.+.+. +.+|. ..+...+..+.. .-+..
T Consensus 124 L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~~~~~~~~ 200 (684)
T 4gmo_A 124 IEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLL---VLIGLLALARDEIHEAVATKQTILRLLFRLISADIAPQD 200 (684)
T ss_dssp HHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHH---HHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHHHCCSCHH
T ss_pred HHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHH---HHHHHHHhCCHHHHHHHHhcccHHHHHHHHHhcCCCcHH
Confidence 8877653222 222211111 11111 245677876554 44443 345555665542 23568
Q ss_pred hHHHHHHHHHHhhC-ChhhHHHHHhc
Q 042013 246 LLKHIIRCYLRLSD-NPRACDALRSC 270 (321)
Q Consensus 246 LLKhiirCYlRLs~-n~rar~aL~~~ 270 (321)
+...+.+|-.-|++ |+.+.+.+...
T Consensus 201 v~~~a~~~L~~ls~dn~~~~~~i~~~ 226 (684)
T 4gmo_A 201 IYEEAISCLTTLSEDNLKVGQAITDD 226 (684)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHhc
Confidence 99999999999887 57777777654
No 33
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=84.03 E-value=47 Score=35.23 Aligned_cols=225 Identities=13% Similarity=0.031 Sum_probs=132.6
Q ss_pred CcchHHHHHHHHhhhhhcccchhhHHhhhhchHHHHHHHHHhhcCCCCCCCCChhhhhHHHHHHHHHHHHhcCchhh---
Q 042013 49 NPDLRENALLELSKNKELFQDLAPFVWNSFGTIAALIQEIVSIYPVLSPPNLTPAQSNRVCNALALLQCVASHPDTR--- 125 (321)
Q Consensus 49 ~p~~Re~AL~eLsk~re~~~~La~~LW~S~Gtia~LLQEIisiYp~Lspp~Lt~~~SnRVCnaLaLLQ~vAshpetR--- 125 (321)
+++.|++|+--|+.--.. ++--..+-...|.+..|++=.-+- ...-.+.|+..|.-++.+.|.+
T Consensus 392 d~~v~~~AveaLayLS~~-~~vk~~lv~d~g~Ip~LV~LL~s~------------d~~i~~~al~~L~NLt~~~d~q~~~ 458 (810)
T 3now_A 392 DKDIRRWAADGLAYLTLD-AECKEKLIEDKASIHALMDLARGG------------NQSCLYGVVTTFVNLCNAYEKQEML 458 (810)
T ss_dssp CSSHHHHHHHHHHHHTTS-HHHHHHHHHCHHHHHHHHHHHHTT------------CGGGHHHHHHHHHHHTTCSCCCCCC
T ss_pred CHHHHHHHHHHHHHHhCC-cHHHHHHHHccchHHHHHHHhCCC------------ChHHHHHHHHHHHHHcCCchhhhhh
Confidence 456788877666654221 233333444468888887655431 2345678888888888765422
Q ss_pred ------------------------------hhhhhhccccccccccccccCCCCcchhhhhhhhhhhhhcccCchHHHHH
Q 042013 126 ------------------------------MLFLNAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKVDDTEVISF 175 (321)
Q Consensus 126 ------------------------------~~FL~a~iplyLyPfL~ttsk~r~~E~LRLtSLGVIgaLvK~dd~evI~f 175 (321)
...+++...-.|--.|.. +.+..|-.+..+++.|.. +++-...
T Consensus 459 ~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s-----~s~~vqe~Aa~aL~NLA~--d~~~r~~ 531 (810)
T 3now_A 459 PEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKT-----ESHNSQELIARVLNAVCG--LKELRGK 531 (810)
T ss_dssp CSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTC-----CCHHHHHHHHHHHHHHHT--SHHHHHH
T ss_pred HHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcC-----CCHHHHHHHHHHHHHHcC--CHHHHHH
Confidence 223333322222223322 235566666666777763 4567788
Q ss_pred HhhhchhhhhhhhccccchhhHHHHHHHHHHHhcccc-chhhhhhhhhHHHHHHHHHHHHHHHHhhCCChhhHHHHHHHH
Q 042013 176 LLSTEIIPLCLRTMEMGSELSKTVATFIVQKILLDDV-GLDYICTTAERFFAVGRVLGNMVAALAEQPSSRLLKHIIRCY 254 (321)
Q Consensus 176 LL~tEiiPLCLriME~GselSKtvAtfIlqKIL~dd~-GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiirCY 254 (321)
+.+...+|..++.+..|+...|..|+..+.++..+.+ ...+-- ..+..++..++.-|..+.+...-.+..++-
T Consensus 532 Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~------~~~~~aIppLv~LL~~~~~~l~~~eAl~AL 605 (810)
T 3now_A 532 VVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSG------QRSLDVIRPLLNLLQQDCTALENFESLMAL 605 (810)
T ss_dssp HHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTT------HHHHHTHHHHHHTTSTTSCHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcc------hhhhcHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence 8889999999999999999999999999999876532 111100 123345566665544333333345788888
Q ss_pred HHhhCC-hhhHHHHHhcCCcccchhhhhhh-hcCCHHHHHHHHHHHHHhCC
Q 042013 255 LRLSDN-PRACDALRSCLPDMLRDATFSSC-LREDPTTRRWLQQLLHNVGV 303 (321)
Q Consensus 255 lRLs~n-~rar~aL~~~LP~~Lrd~~f~~~-l~~D~~~k~~l~qLl~nl~~ 303 (321)
..|+.+ +..+.++-+. .-- ..+..+ ..+++.+++-=..++.|+-.
T Consensus 606 ~NLa~~~d~~~~~Ii~a---G~l-~~Lv~LL~s~~~~Vq~~A~~~L~NLa~ 652 (810)
T 3now_A 606 TNLASMNESVRQRIIKE---QGV-SKIEYYLMEDHLYLTRAAAQCLCNLVM 652 (810)
T ss_dssp HHHTTSCHHHHHHHHHT---THH-HHHHHHHHSCCTTHHHHHHHHHHHHTT
T ss_pred HHHhcCCHHHHHHHHHc---CCH-HHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 888886 3555554432 000 111222 24566777777777777764
No 34
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=83.66 E-value=5.5 Score=39.15 Aligned_cols=149 Identities=13% Similarity=0.109 Sum_probs=98.8
Q ss_pred CcchHHH---HHHHHhh-hhhcccchhhHHhhhhchHHHHHHHHHhhcCCCCCCCCChhhhhHHHHHHHHHHHHh----c
Q 042013 49 NPDLREN---ALLELSK-NKELFQDLAPFVWNSFGTIAALIQEIVSIYPVLSPPNLTPAQSNRVCNALALLQCVA----S 120 (321)
Q Consensus 49 ~p~~Re~---AL~eLsk-~re~~~~La~~LW~S~Gtia~LLQEIisiYp~Lspp~Lt~~~SnRVCnaLaLLQ~vA----s 120 (321)
+++.+++ ||..||. ..+. ...+-..-|.+..|++=+.+..+ . ....-+-+|.+.|-.++ .
T Consensus 300 ~~~v~~~A~~aL~nLs~~~~~n----k~~I~~~~Gal~~Lv~LL~~~~~-------~-~~~~v~~~A~~aL~nLs~~~a~ 367 (458)
T 3nmz_A 300 KESTLKSVLSALWNLSAHCTEN----KADICAVDGALAFLVGTLTYRSQ-------T-NTLAIIESGGGILRNVSSLIAT 367 (458)
T ss_dssp SHHHHHHHHHHHHHHHHHCHHH----HHHHHHSTTHHHHHHHHTTCCCS-------S-STTHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHccCCHHH----HHHHHHhcCcHHHHHHHhcCCCC-------c-chHHHHHHHHHHHHHHHhcccC
Confidence 3455664 5566665 3232 23333345888877665532110 0 00012334555555565 4
Q ss_pred CchhhhhhhhhccccccccccccccCCCCcchhhhhhhhhhhhhcccCchHHHHHHhhhchhhhhhhhccccchhhHHHH
Q 042013 121 HPDTRMLFLNAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKVDDTEVISFLLSTEIIPLCLRTMEMGSELSKTVA 200 (321)
Q Consensus 121 hpetR~~FL~a~iplyLyPfL~ttsk~r~~E~LRLtSLGVIgaLvK~dd~evI~fLL~tEiiPLCLriME~GselSKtvA 200 (321)
+++.|..++++...-.|--.|... -+..+--..++++.|... +++...++.+...||.....++.+++-.|..|
T Consensus 368 ~~~~~~~i~~~G~i~~Lv~LL~~~-----~~~v~~~A~~aL~nLa~~-~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~A 441 (458)
T 3nmz_A 368 NEDHRQILRENNCLQTLLQHLKSH-----SLTIVSNACGTLWNLSAR-NPKDQEALWDMGAVSMLKNLIHSKHKMIAMGS 441 (458)
T ss_dssp CHHHHHHHHHTTHHHHHHHHSSCS-----CHHHHHHHHHHHHHHHSS-CHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHH
T ss_pred CHHHHHHHHHcccHHHHHHHHcCC-----ChHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHH
Confidence 899999999988765565566532 234777888999988753 67788899999999999999999999999999
Q ss_pred HHHHHHHhccccchhh
Q 042013 201 TFIVQKILLDDVGLDY 216 (321)
Q Consensus 201 tfIlqKIL~dd~GL~Y 216 (321)
...+..|+.+. -.+|
T Consensus 442 a~AL~nL~~~~-p~ky 456 (458)
T 3nmz_A 442 AAALRNLMANR-PAKY 456 (458)
T ss_dssp HHHHHHHHTCC-SCC-
T ss_pred HHHHHHHHcCC-Hhhh
Confidence 99999998764 4444
No 35
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=81.93 E-value=43 Score=33.26 Aligned_cols=233 Identities=15% Similarity=0.137 Sum_probs=126.2
Q ss_pred HHHHHHHhcC--CcchHHHHHHHHhhhhhcccchhhHHhhhhchHHHHHHHHHhhcCCCCCCCCChhhhhHHHHHHHHHH
Q 042013 39 SAEHLVLDLS--NPDLRENALLELSKNKELFQDLAPFVWNSFGTIAALIQEIVSIYPVLSPPNLTPAQSNRVCNALALLQ 116 (321)
Q Consensus 39 ~v~q~I~~L~--~p~~Re~AL~eLsk~re~~~~La~~LW~S~Gtia~LLQEIisiYp~Lspp~Lt~~~SnRVCnaLaLLQ 116 (321)
.+..+..||. |+-.|..||.-|++-+. +++++ .+++.|...- . +.+..-|=..++++..
T Consensus 108 ~in~l~kDL~~~n~~vr~lAL~~L~~i~~--~~~~~----------~l~~~l~~~L---~----~~~~~VRk~A~~al~~ 168 (618)
T 1w63_A 108 MTNCIKNDLNHSTQFVQGLALCTLGCMGS--SEMCR----------DLAGEVEKLL---K----TSNSYLRKKAALCAVH 168 (618)
T ss_dssp HHHHHHHHHSCSSSHHHHHHHHHHHHHCC--HHHHH----------HHHHHHHHHH---H----SCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCHhHHHHHHHHHHhcCC--HHHHH----------HHHHHHHHHH---c----CCCHHHHHHHHHHHHH
Confidence 4556677777 45569999999999874 44432 2333332221 1 1235667778888888
Q ss_pred HHhcCchhhhhhhhhccccccccccccccCCCCcchhhhhhhhhhhhhcccCchHHHHHHhhhchhhhhhhhccc-----
Q 042013 117 CVASHPDTRMLFLNAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKVDDTEVISFLLSTEIIPLCLRTMEM----- 191 (321)
Q Consensus 117 ~vAshpetR~~FL~a~iplyLyPfL~ttsk~r~~E~LRLtSLGVIgaLvK~dd~evI~fLL~tEiiPLCLriME~----- 191 (321)
....+|+.-..|+ -.+...|+ .+...++.++++.++.+.+. +++....+. .++|...+++..
T Consensus 169 l~~~~p~~v~~~~-----~~l~~lL~-----D~d~~V~~~Al~~L~~i~~~-~~~~~~~~~--~~v~~l~~~L~~~~~~~ 235 (618)
T 1w63_A 169 VIRKVPELMEMFL-----PATKNLLN-----EKNHGVLHTSVVLLTEMCER-SPDMLAHFR--KLVPQLVRILKNLIMSG 235 (618)
T ss_dssp HHHHCGGGGGGGG-----GGTTTSTT-----CCCHHHHHHHHHHHHHHCCS-HHHHHHHHH--TTHHHHHHHHHHHHHSC
T ss_pred HHHHChHHHHHHH-----HHHHHHhC-----CCCHhHHHHHHHHHHHHHHh-ChHHHHHHH--HHHHHHHHHHHHHHcCC
Confidence 8888888665433 23344443 23457788888888887765 556544443 678877776542
Q ss_pred ----------cchhhHHHHHHHHHHHhccccch--------hhhhhhhhHHH-HHHHHHHHHHHHHh-hCCChhhHHHHH
Q 042013 192 ----------GSELSKTVATFIVQKILLDDVGL--------DYICTTAERFF-AVGRVLGNMVAALA-EQPSSRLLKHII 251 (321)
Q Consensus 192 ----------GselSKtvAtfIlqKIL~dd~GL--------~YiC~t~eRF~-av~~vL~~mV~~l~-~~ps~RLLKhii 251 (321)
.++..+.....++.++-..|..+ .-++...+.-. +-..|+...+..+. -.+++.+.+.++
T Consensus 236 ~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~~~l~~~a~ 315 (618)
T 1w63_A 236 YSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSESGLRVLAI 315 (618)
T ss_dssp CCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred CCccccccCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 47888888777777776554321 11111000000 00011111111111 123455555566
Q ss_pred HHHHHhhC--ChhhHHH-------HHhcCCcccch--hhhhhhhc-CCHHHHHHHHHHHHHhCC
Q 042013 252 RCYLRLSD--NPRACDA-------LRSCLPDMLRD--ATFSSCLR-EDPTTRRWLQQLLHNVGV 303 (321)
Q Consensus 252 rCYlRLs~--n~rar~a-------L~~~LP~~Lrd--~~f~~~l~-~D~~~k~~l~qLl~nl~~ 303 (321)
.+..++.. ++..|.. +.+.-|+.+.+ ..+-.++. +|..+|+.=.+++..+..
T Consensus 316 ~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~~~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~ 379 (618)
T 1w63_A 316 NILGRFLLNNDKNIRYVALTSLLKTVQTDHNAVQRHRSTIVDCLKDLDVSIKRRAMELSFALVN 379 (618)
T ss_dssp HHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHHHGGGHHHHHHGGGSSCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHhhCHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHcc
Confidence 66655433 4433321 22223443332 23444444 488888888888888764
No 36
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=79.74 E-value=15 Score=36.51 Aligned_cols=102 Identities=18% Similarity=0.160 Sum_probs=60.5
Q ss_pred cchhhhhhhhhhhhhcccCchHHHHHHhhhchhhhhhhhcccc--chhhHHHHHHHHHHHhccccchhhhhhhhhHHHHH
Q 042013 150 FEYLRLTSLGVIGALVKVDDTEVISFLLSTEIIPLCLRTMEMG--SELSKTVATFIVQKILLDDVGLDYICTTAERFFAV 227 (321)
Q Consensus 150 ~E~LRLtSLGVIgaLvK~dd~evI~fLL~tEiiPLCLriME~G--selSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av 227 (321)
-+..|-.+|.+++.+++.-+++.+.- ...+++|.+++.+..+ +.--+..|.-.+..++.. +....++....
T Consensus 143 ~~~~r~~al~~l~~l~~~~~~~~~~~-~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~------~~~~~~~~~~~ 215 (876)
T 1qgr_A 143 TEHMKESTLEAIGYICQDIDPEQLQD-KSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEF------TKANFDKESER 215 (876)
T ss_dssp CHHHHHHHHHHHHHHHHHSCHHHHGG-GHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGG------CHHHHTSHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCHhhHHh-HHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHH------HHHHHHhHHHH
Confidence 46899999999999987533443211 1246788888888776 455667777777777642 11111110000
Q ss_pred HHHHHHHHHHHhhCCChhhHHHHHHHHHHhhC
Q 042013 228 GRVLGNMVAALAEQPSSRLLKHIIRCYLRLSD 259 (321)
Q Consensus 228 ~~vL~~mV~~l~~~ps~RLLKhiirCYlRLs~ 259 (321)
..++. .+......++.++-+.+++|..++.+
T Consensus 216 ~~il~-~l~~~~~~~~~~vr~~a~~~l~~l~~ 246 (876)
T 1qgr_A 216 HFIMQ-VVCEATQCPDTRVRVAALQNLVKIMS 246 (876)
T ss_dssp HHHHH-HHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 01222 22234456778888888888887775
No 37
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=79.25 E-value=37 Score=34.39 Aligned_cols=189 Identities=13% Similarity=0.198 Sum_probs=110.1
Q ss_pred chhhhHHHHHHHhcCCc--chHHHHHHHHhhhhhcccchhhHHhhhhchHHHHHHHHHhhcCCCCCCCCChhhhhHHHHH
Q 042013 34 DRKMASAEHLVLDLSNP--DLRENALLELSKNKELFQDLAPFVWNSFGTIAALIQEIVSIYPVLSPPNLTPAQSNRVCNA 111 (321)
Q Consensus 34 ~~~~~~v~q~I~~L~~p--~~Re~AL~eLsk~re~~~~La~~LW~S~Gtia~LLQEIisiYp~Lspp~Lt~~~SnRVCna 111 (321)
....+++.+++.+..+| +.|..|-..|-.- +..|+....|+ +|... +. +....-|-..+
T Consensus 9 ~~~~~~l~~~l~~~~s~d~~~r~~Ae~~L~~~-~~~p~~~~~l~-----------~il~~---~~----~~~~~vR~~a~ 69 (852)
T 4fdd_A 9 EQGLQQILQLLKESQSPDTTIQRTVQQKLEQL-NQYPDFNNYLI-----------FVLTK---LK----SEDEPTRSLSG 69 (852)
T ss_dssp HHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHH-TTSHHHHHHHH-----------HHHHT---CT----TSCHHHHHHHH
T ss_pred hhhHHHHHHHHHHHhCcCHHHHHHHHHHHHHH-HhCCCHHHHHH-----------HHHhc---cC----CCChHHHHHHH
Confidence 34567788888888866 6698998888543 22343322222 22221 11 12345677778
Q ss_pred HHHHHHHhcC----chhhhhhhhhccccccccccccccCCCCcchhhhhhhhhhhhhcccCchHHHHHHhhhchhhhhhh
Q 042013 112 LALLQCVASH----PDTRMLFLNAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKVDDTEVISFLLSTEIIPLCLR 187 (321)
Q Consensus 112 LaLLQ~vAsh----petR~~FL~a~iplyLyPfL~ttsk~r~~E~LRLtSLGVIgaLvK~dd~evI~fLL~tEiiPLCLr 187 (321)
+.|=..|..| ++--+..++..+.-. |. .+-..+|-..-.+|+.+++.+.++ -..|++|....
T Consensus 70 ~~Lkn~i~~~w~~~~~~~~~~ik~~ll~~----l~-----~~~~~vr~~~a~~i~~ia~~~~~~-----~wp~ll~~L~~ 135 (852)
T 4fdd_A 70 LILKNNVKAHFQNFPNGVTDFIKSECLNN----IG-----DSSPLIRATVGILITTIASKGELQ-----NWPDLLPKLCS 135 (852)
T ss_dssp HHHHHHTTTSGGGCCHHHHHHHHHHHHTT----TT-----CSSHHHHHHHHHHHHHHHHHTTTT-----TCTTHHHHHHH
T ss_pred HHHHHHHHHccCCCCHHHHHHHHHHHHHH----Hc-----CCCHHHHHHHHHHHHHHHHhcCcc-----ccHHHHHHHHH
Confidence 7777777653 222233555555433 22 234579999999999998876332 13678888888
Q ss_pred hccccchhhHHHHHHHHHHHhccccchhhhhhhhhHHHHHHHHHHHHHHHHhhCCChhhHHHHHHHHHHhhC
Q 042013 188 TMEMGSELSKTVATFIVQKILLDDVGLDYICTTAERFFAVGRVLGNMVAALAEQPSSRLLKHIIRCYLRLSD 259 (321)
Q Consensus 188 iME~GselSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiirCYlRLs~ 259 (321)
.+..++.-.|-.|..++.+|..+....-- -+...+ .+..++..++. +..++++.+-...++|...+..
T Consensus 136 ~l~~~~~~~r~~al~~L~~i~~~~~~~~~-~~~~~~--~~~~il~~l~~-~l~~~~~~vR~~A~~aL~~~~~ 203 (852)
T 4fdd_A 136 LLDSEDYNTCEGAFGALQKICEDSAEILD-SDVLDR--PLNIMIPKFLQ-FFKHSSPKIRSHAVACVNQFII 203 (852)
T ss_dssp HHSCSSHHHHHHHHHHHHHHHHHHTTHHH-HCSSSS--CHHHHHHHHTT-TTTCSSHHHHHHHHHHHHTTTT
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHhHHHhc-hhhhcc--hHHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHHh
Confidence 88988888899999988887755322100 000000 02223333332 3346677777777777665543
No 38
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=78.89 E-value=37 Score=30.60 Aligned_cols=217 Identities=13% Similarity=0.054 Sum_probs=112.9
Q ss_pred HHHHHHHhcCCcc--hHHHHHHHHhhhhhcccchhhHHhhhhchHHHHHHHHHhhcCCCCCCCCChhhhhHHHHHHHHHH
Q 042013 39 SAEHLVLDLSNPD--LRENALLELSKNKELFQDLAPFVWNSFGTIAALIQEIVSIYPVLSPPNLTPAQSNRVCNALALLQ 116 (321)
Q Consensus 39 ~v~q~I~~L~~p~--~Re~AL~eLsk~re~~~~La~~LW~S~Gtia~LLQEIisiYp~Lspp~Lt~~~SnRVCnaLaLLQ 116 (321)
.+.+++..+.+|+ .|..|-..|-+-.++ +.+|.+..|++-+.+. +....-|-..++.|=.
T Consensus 2 ~l~~~L~~~~s~d~~~r~~Ae~~L~~~~~~---------~~~~~~~~L~~il~~~---------~~~~~vR~~a~~~Lk~ 63 (462)
T 1ibr_B 2 ELITILEKTVSPDRLELEAAQKFLERAAVE---------NLPTFLVELSRVLANP---------GNSQVARVAAGLQIKN 63 (462)
T ss_dssp CHHHHHHHTTCSCHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHCT---------TSCHHHHHHHHHHHHH
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHHhh---------ChHHHHHHHHHHHHcC---------CCChHHHHHHHHHHHH
Confidence 3667888888665 587777776553321 1223334454444321 1123456655655555
Q ss_pred HHhcC---------------chhhhhhhhhccccccccccccccCCCCcchhhhhhhhhhhhhcccCchHHHHHHhhhch
Q 042013 117 CVASH---------------PDTRMLFLNAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKVDDTEVISFLLSTEI 181 (321)
Q Consensus 117 ~vAsh---------------petR~~FL~a~iplyLyPfL~ttsk~r~~E~LRLtSLGVIgaLvK~dd~evI~fLL~tEi 181 (321)
.+..+ ++--+..++.. |.+.|... -+.+ -..-.+|+.+.+.+.++- -..++
T Consensus 64 ~i~~~~~~~~~~~~~~~~~l~~~~~~~ik~~----ll~~l~~~-----~~~v-~~~~~~i~~ia~~~~~~~----~w~~l 129 (462)
T 1ibr_B 64 SLTSKDPDIKAQYQQRWLAIDANARREVKNY----VLQTLGTE-----TYRP-SSASQCVAGIACAEIPVN----QWPEL 129 (462)
T ss_dssp HHCCSSHHHHHHHHHHHHTSCHHHHHHHHHH----HHHHTTCC-----CSSS-CSHHHHHHHHHHHHGGGT----CCTTH
T ss_pred hccccchHHHHHHHhhhhcCCHHHHHHHHHH----HHHHhCCC-----Cchh-hHHHHHHHHHHHHhcccc----ccHHH
Confidence 55433 11111222322 23333321 1233 334455666666543320 12578
Q ss_pred hhhhhhhcccc--chhhHHHHHHHHHHHhccccchhhhhhhhhHHHHHHHHHHHHHHHHhhC-CChhhHHHHHHHHHHhh
Q 042013 182 IPLCLRTMEMG--SELSKTVATFIVQKILLDDVGLDYICTTAERFFAVGRVLGNMVAALAEQ-PSSRLLKHIIRCYLRLS 258 (321)
Q Consensus 182 iPLCLriME~G--selSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~-ps~RLLKhiirCYlRLs 258 (321)
+|..+..+..+ +.-.|-.|..++.++..+-.|-. .+.+ +..++..++..+... +++.+-+..++|+..+.
T Consensus 130 l~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~-----~~~~--~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~ 202 (462)
T 1ibr_B 130 IPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQ-----LQDK--SNEILTAIIQGMRKEEPSNNVKLAATNALLNSL 202 (462)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGG-----TGGG--HHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchh-----hHhH--HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHH
Confidence 88888888887 77788889999888876532210 1111 223444444444433 37888888888887754
Q ss_pred CChh-------hHHHHHhcCCcccchhhhhhhhcCCHHHHHHHHHHHHHhC
Q 042013 259 DNPR-------ACDALRSCLPDMLRDATFSSCLREDPTTRRWLQQLLHNVG 302 (321)
Q Consensus 259 ~n~r-------ar~aL~~~LP~~Lrd~~f~~~l~~D~~~k~~l~qLl~nl~ 302 (321)
+--+ .++.+-+.+++ ..-.+|+.++.+..+.+..+.
T Consensus 203 ~~~~~~~~~~~~~~~l~~~l~~--------~~~~~~~~vr~~~~~~l~~l~ 245 (462)
T 1ibr_B 203 EFTKANFDKESERHFIMQVVCE--------ATQCPDTRVRVAALQNLVKIM 245 (462)
T ss_dssp TTTHHHHTSHHHHHHHHHHHHH--------HTTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhHHHHHHHHHHHH--------hcCCCCHHHHHHHHHHHHHHH
Confidence 3210 01111111111 112357888888888887775
No 39
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=78.45 E-value=30 Score=35.26 Aligned_cols=176 Identities=17% Similarity=0.149 Sum_probs=116.9
Q ss_pred hhHHhhhhchHHHHHHHHHhhcCCCCCCCCChhhhhHHHHHHHHHHHHhc-CchhhhhhhhhccccccccccccccCCCC
Q 042013 71 APFVWNSFGTIAALIQEIVSIYPVLSPPNLTPAQSNRVCNALALLQCVAS-HPDTRMLFLNAHIPLYLYPFLNTTSKSRP 149 (321)
Q Consensus 71 a~~LW~S~Gtia~LLQEIisiYp~Lspp~Lt~~~SnRVCnaLaLLQ~vAs-hpetR~~FL~a~iplyLyPfL~ttsk~r~ 149 (321)
+..-|.+ +++..|++-+ ..+ ...-.++|..-|+-++. +++.|....++.-.-.|--+|.. +
T Consensus 41 ~~~~~~~-~~i~~LV~~L-------~s~-----~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s-----~ 102 (584)
T 3l6x_A 41 PPPNWRQ-PELPEVIAML-------GFR-----LDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDH-----P 102 (584)
T ss_dssp CCCCCCC-CCHHHHHHHT-------TCS-----CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGC-----S
T ss_pred CCCCccc-ccHHHHHHHH-------CCC-----CHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCC-----C
Confidence 4556776 6666666643 211 12334566677899996 78899999888765555666653 3
Q ss_pred cchhhhhhhhhhhhhcccCchHHHHHHhhhchhhhhhhhcccc-chhhHHHHHHHHHHHhccccchhhhhhhhhHHHHHH
Q 042013 150 FEYLRLTSLGVIGALVKVDDTEVISFLLSTEIIPLCLRTMEMG-SELSKTVATFIVQKILLDDVGLDYICTTAERFFAVG 228 (321)
Q Consensus 150 ~E~LRLtSLGVIgaLvK~dd~evI~fLL~tEiiPLCLriME~G-selSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~ 228 (321)
.+.++-...+.++-|...++.+.-..+.....||..++.+..+ ++-.|--|+-.+..+=.++..-.-|+. .+|
T Consensus 103 ~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~-----~al- 176 (584)
T 3l6x_A 103 KKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVD-----HAL- 176 (584)
T ss_dssp SHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHH-----HTH-
T ss_pred CHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHh-----ccH-
Confidence 5789999999999999876677777788899999999999974 544566666666666554443333331 122
Q ss_pred HHHHHHHH-H-------------HhhCCChhhHHHHHHHHHHhhCC-hhhHHHHHhc
Q 042013 229 RVLGNMVA-A-------------LAEQPSSRLLKHIIRCYLRLSDN-PRACDALRSC 270 (321)
Q Consensus 229 ~vL~~mV~-~-------------l~~~ps~RLLKhiirCYlRLs~n-~rar~aL~~~ 270 (321)
..|-+++. . +...++..++++..+|---||.+ +..|.+++++
T Consensus 177 p~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~ 233 (584)
T 3l6x_A 177 HALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLREC 233 (584)
T ss_dssp HHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHS
T ss_pred HHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHc
Confidence 12222221 0 01123579999999999999864 5779988864
No 40
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=73.92 E-value=43 Score=31.29 Aligned_cols=165 Identities=13% Similarity=0.137 Sum_probs=85.7
Q ss_pred hhhHHHHHHHhcCCc--chHHHHHHHHhhhhh------cccchhhHHhhhhchHHHHHHHHHhhcCCCCCCCCChhhhhH
Q 042013 36 KMASAEHLVLDLSNP--DLRENALLELSKNKE------LFQDLAPFVWNSFGTIAALIQEIVSIYPVLSPPNLTPAQSNR 107 (321)
Q Consensus 36 ~~~~v~q~I~~L~~p--~~Re~AL~eLsk~re------~~~~La~~LW~S~Gtia~LLQEIisiYp~Lspp~Lt~~~SnR 107 (321)
+...+..++..|.++ +.|..|+..|++.-. ..+++-+.|+.....-.-..+++...-..+.+. +.. ...
T Consensus 8 ~~~~i~~l~~~l~s~~~~~R~~A~~~l~~i~~~~~~~~~~~~l~~~L~~~~d~~~~vr~~~~~~L~~~~~~-~~~--~~~ 84 (588)
T 1b3u_A 8 SLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLLALAEQLGTFTTL-VGG--PEY 84 (588)
T ss_dssp SSHHHHHHHHHTTCSCHHHHHHHHHTHHHHHHHSCHHHHHHTHHHHHHHTCCCCHHHHHHHHHHHTTCSGG-GTS--GGG
T ss_pred CcCcHHHHHHHhhcccHHHHHHHHHhHHHHHHHhCHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhc-cCc--HHH
Confidence 345577888888855 569999888876321 234555666543221111112222222222110 000 011
Q ss_pred HHHHHHHHHHHhcC--chhhhhhhhh------c-----cccccccccccccCCCCcchhhhhhhhhhhhhcccCchHHHH
Q 042013 108 VCNALALLQCVASH--PDTRMLFLNA------H-----IPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKVDDTEVIS 174 (321)
Q Consensus 108 VCnaLaLLQ~vAsh--petR~~FL~a------~-----iplyLyPfL~ttsk~r~~E~LRLtSLGVIgaLvK~dd~evI~ 174 (321)
+...+.+|..+.++ +++|..-.++ + +--++.|++..-.++. ....|.++.+++|.+...-..+.
T Consensus 85 ~~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~~~-~~~~R~~a~~~l~~~~~~~~~~~-- 161 (588)
T 1b3u_A 85 VHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGD-WFTSRTSACGLFSVCYPRVSSAV-- 161 (588)
T ss_dssp GGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCS-SHHHHHHHGGGHHHHTTTSCHHH--
T ss_pred HHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHHHhcCHHH--
Confidence 11233333334332 3455433221 1 1235677775443333 45789999999998876544332
Q ss_pred HHhhhchhhhhhhhccccchhhHHHHHHHHHHHhc
Q 042013 175 FLLSTEIIPLCLRTMEMGSELSKTVATFIVQKILL 209 (321)
Q Consensus 175 fLL~tEiiPLCLriME~GselSKtvAtfIlqKIL~ 209 (321)
..+++|.+.+.++..+.--+..|...+.++..
T Consensus 162 ---~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~ 193 (588)
T 1b3u_A 162 ---KAELRQYFRNLCSDDTPMVRRAAASKLGEFAK 193 (588)
T ss_dssp ---HHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 35678888887776666666667666666653
No 41
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=72.74 E-value=56 Score=33.06 Aligned_cols=106 Identities=8% Similarity=0.133 Sum_probs=70.1
Q ss_pred CcchhhhhhhhhhhhhcccCchHHHHHHhhhchhhhhhhhccccchhhHHHHHHHHHHHhccccchhhhhhhhhHHH-HH
Q 042013 149 PFEYLRLTSLGVIGALVKVDDTEVISFLLSTEIIPLCLRTMEMGSELSKTVATFIVQKILLDDVGLDYICTTAERFF-AV 227 (321)
Q Consensus 149 ~~E~LRLtSLGVIgaLvK~dd~evI~fLL~tEiiPLCLriME~GselSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~-av 227 (321)
+-..+|..++..++.+++.........+ .+++|..++.+..+++-.|..|.-.+.++.... ++.|. ++
T Consensus 186 ~~~~vR~~A~~aL~~~~~~~~~~~~~~~--~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~---------~~~~~~~l 254 (852)
T 4fdd_A 186 SSPKIRSHAVACVNQFIISRTQALMLHI--DSFIENLFALAGDEEPEVRKNVCRALVMLLEVR---------MDRLLPHM 254 (852)
T ss_dssp SSHHHHHHHHHHHHTTTTTTCHHHHTSH--HHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHC---------HHHHGGGH
T ss_pred CCHHHHHHHHHHHHHHHhcccHHHHHHH--HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhC---------HHHHHHHH
Confidence 4567999999999999887554432221 367788888777777777777777777766532 22221 23
Q ss_pred HHHHHHHHHHHhhCCChhhHHHHHHHHHHhhCChhhHHH
Q 042013 228 GRVLGNMVAALAEQPSSRLLKHIIRCYLRLSDNPRACDA 266 (321)
Q Consensus 228 ~~vL~~mV~~l~~~ps~RLLKhiirCYlRLs~n~rar~a 266 (321)
..++..++. +..++++.+-...+.+...+++++..+..
T Consensus 255 ~~l~~~l~~-~~~~~~~~vr~~a~e~l~~l~~~~~~~~~ 292 (852)
T 4fdd_A 255 HNIVEYMLQ-RTQDQDENVALEACEFWLTLAEQPICKDV 292 (852)
T ss_dssp HHHHHHHHH-HHTCSSHHHHHHHHHHHHHHTTSTTHHHH
T ss_pred HHHHHHHHH-HccCCcHHHHHHHHHHHHHHhcchhHHHH
Confidence 344444444 34467788888888888899987655543
No 42
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=72.18 E-value=13 Score=36.76 Aligned_cols=113 Identities=14% Similarity=0.182 Sum_probs=58.0
Q ss_pred ccccccccCCCCcchhhhhhhhhhhhhcccCchHH---HHHHhhhchhhhhhhhcccc--chhhHHHHHHHHHHHhcccc
Q 042013 138 YPFLNTTSKSRPFEYLRLTSLGVIGALVKVDDTEV---ISFLLSTEIIPLCLRTMEMG--SELSKTVATFIVQKILLDDV 212 (321)
Q Consensus 138 yPfL~ttsk~r~~E~LRLtSLGVIgaLvK~dd~ev---I~fLL~tEiiPLCLriME~G--selSKtvAtfIlqKIL~dd~ 212 (321)
.|+|-..-++...+..|..++.+++.+.+.-+++. ..+ ..+++|.++..++.. +.--+..|.-.+..++.
T Consensus 136 l~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~--~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~--- 210 (861)
T 2bpt_A 136 MKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSS--SNNILIAIVQGAQSTETSKAVRLAALNALADSLI--- 210 (861)
T ss_dssp HHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGG--HHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGG---
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHH--HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHH---
Confidence 35553333332256788888888888877422221 111 245778888877765 55555666666666542
Q ss_pred chhhhhhhhhHHHHHHHHHHHHHHHHhhCCChhhHHHHHHHHHHhhC
Q 042013 213 GLDYICTTAERFFAVGRVLGNMVAALAEQPSSRLLKHIIRCYLRLSD 259 (321)
Q Consensus 213 GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiirCYlRLs~ 259 (321)
|+....+.......++. .+......+++++-+.+++|..++.+
T Consensus 211 ---~~~~~~~~~~~~~~ll~-~l~~~~~~~~~~~r~~a~~~l~~l~~ 253 (861)
T 2bpt_A 211 ---FIKNNMEREGERNYLMQ-VVCEATQAEDIEVQAAAFGCLCKIMS 253 (861)
T ss_dssp ---GCHHHHTSHHHHHHHHH-HHHHHHTCSCHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHccChhHHHHHHH-HHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 11111111000111121 22233455667766777777766664
No 43
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=70.25 E-value=16 Score=37.08 Aligned_cols=158 Identities=13% Similarity=0.110 Sum_probs=97.1
Q ss_pred CcchHHHHHHHHhhh-hhcccchhhHHhhhhchHHHHHHHH---HhhcCCCCC-CCCChhhhhHHH-----HHHHHHHHH
Q 042013 49 NPDLRENALLELSKN-KELFQDLAPFVWNSFGTIAALIQEI---VSIYPVLSP-PNLTPAQSNRVC-----NALALLQCV 118 (321)
Q Consensus 49 ~p~~Re~AL~eLsk~-re~~~~La~~LW~S~Gtia~LLQEI---isiYp~Lsp-p~Lt~~~SnRVC-----naLaLLQ~v 118 (321)
+.+-|++|.--|..- .+.-++..-.+|.. |+++.|+.-+ .+..-...+ .......+.+.- |++.+|-++
T Consensus 89 ~~~Vr~~A~gaLrnL~~~~g~d~~~~l~~~-~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L 167 (684)
T 4gmo_A 89 NIDSRAAGWEILKVLAQEEEADFCVHLYRL-DVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLL 167 (684)
T ss_dssp CHHHHHHHHHHHHHHHHHSCHHHHHHHHHT-THHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhhcCchHHHHHHHc-ChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 344477765544321 12346777889988 8888665444 333333322 222222233322 688899999
Q ss_pred hcCc-hhhhhhhhhccccccccccccccCCCCcchhhhhhhhhhhhhcccCchHHHHHHhhhchhhh--hhhhccccchh
Q 042013 119 ASHP-DTRMLFLNAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKVDDTEVISFLLSTEIIPL--CLRTMEMGSEL 195 (321)
Q Consensus 119 Ashp-etR~~FL~a~iplyLyPfL~ttsk~r~~E~LRLtSLGVIgaLvK~dd~evI~fLL~tEiiPL--CLriME~Gsel 195 (321)
+.+. +....+.+......|..+|-..++. -+.++.+.+..+..+... ..+.+.-+.+.....+ ++--+..++..
T Consensus 168 ~e~s~~~~~~v~~~~~l~~l~~~L~~~~~~--~~~v~~~a~~~L~~ls~d-n~~~~~~i~~~~~~~~~~~ll~~~~~~~~ 244 (684)
T 4gmo_A 168 ALARDEIHEAVATKQTILRLLFRLISADIA--PQDIYEEAISCLTTLSED-NLKVGQAITDDQETHVYDVLLKLATGTDP 244 (684)
T ss_dssp HHHCHHHHHHHHTCHHHHHHHHHHHHHCCS--CHHHHHHHHHHHHHHHTT-CHHHHHHHHTCCSSCHHHHHHHHHHSSCT
T ss_pred HhCCHHHHHHHHhcccHHHHHHHHHhcCCC--cHHHHHHHHHHHHHHhcc-CHHHHHHHHhcchHHHHHHHHHHhcCCcH
Confidence 8655 5555666776666666776433332 246888888888887754 5577777777655444 33334567788
Q ss_pred hHHHHHHHHHHHhcc
Q 042013 196 SKTVATFIVQKILLD 210 (321)
Q Consensus 196 SKtvAtfIlqKIL~d 210 (321)
.|++|..|+..|...
T Consensus 245 ~~~la~giL~Ni~~~ 259 (684)
T 4gmo_A 245 RAVMACGVLHNVFTS 259 (684)
T ss_dssp THHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHhhh
Confidence 899999999998654
No 44
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=70.10 E-value=9.6 Score=34.50 Aligned_cols=228 Identities=14% Similarity=0.102 Sum_probs=110.1
Q ss_pred CcchHHHHHHHHhhhhhccc----chhhHHhhhhc--hHHHHHHHHHhhcCCCCCCCCChhhhhHHHHHHHHHHHHhcCc
Q 042013 49 NPDLRENALLELSKNKELFQ----DLAPFVWNSFG--TIAALIQEIVSIYPVLSPPNLTPAQSNRVCNALALLQCVASHP 122 (321)
Q Consensus 49 ~p~~Re~AL~eLsk~re~~~----~La~~LW~S~G--tia~LLQEIisiYp~Lspp~Lt~~~SnRVCnaLaLLQ~vAshp 122 (321)
+++.|..|..-|-+.-+... +-....|...+ ....+-+.++.. +..++ ... +.+|.+++-+ |.+.
T Consensus 50 ~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~---l~~~~--~~v-~~~~~~i~~i---a~~~ 120 (462)
T 1ibr_B 50 SQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQT---LGTET--YRP-SSASQCVAGI---ACAE 120 (462)
T ss_dssp CHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHH---TTCCC--SSS-CSHHHHHHHH---HHHH
T ss_pred ChHHHHHHHHHHHHhccccchHHHHHHHhhhhcCCHHHHHHHHHHHHHH---hCCCC--chh-hHHHHHHHHH---HHHh
Confidence 45568777766655422110 00112466532 223444444443 22211 222 5566666543 4331
Q ss_pred hhhhhhhhhccccccccccccccCCCC-cchhhhhhhhhhhhhcccCchHHHHHHhhhchhhhhhhhcccc--chhhHHH
Q 042013 123 DTRMLFLNAHIPLYLYPFLNTTSKSRP-FEYLRLTSLGVIGALVKVDDTEVISFLLSTEIIPLCLRTMEMG--SELSKTV 199 (321)
Q Consensus 123 etR~~FL~a~iplyLyPfL~ttsk~r~-~E~LRLtSLGVIgaLvK~dd~evI~fLL~tEiiPLCLriME~G--selSKtv 199 (321)
|-..+.|- +.|+|-...++.. -+..|...+.+++.+++.-.++...-.. ..++|.+++.++.. +.--+..
T Consensus 121 -----~~~~~w~~-ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~~vr~~ 193 (462)
T 1ibr_B 121 -----IPVNQWPE-LIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS-NEILTAIIQGMRKEEPSNNVKLA 193 (462)
T ss_dssp -----GGGTCCTT-HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH-HHHHHHHHHHHSTTCCCHHHHHH
T ss_pred -----ccccccHH-HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH-HHHHHHHHHHhCCCCCCHHHHHH
Confidence 00112332 3444433323322 4678999999999988743232211111 35889999988877 5555666
Q ss_pred HHHHHHHHhccccchhhhhhhhhHHHHHHHHHHHHHHHHhhCCChhhHHHHHHHHHHhhCChhhHHHHHhcCCcccchhh
Q 042013 200 ATFIVQKILLDDVGLDYICTTAERFFAVGRVLGNMVAALAEQPSSRLLKHIIRCYLRLSDNPRACDALRSCLPDMLRDAT 279 (321)
Q Consensus 200 AtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiirCYlRLs~n~rar~aL~~~LP~~Lrd~~ 279 (321)
|.-.+..++. |+-...+... ....+-..+......+++.+-+.+++|...+.++. -+.+...++..+..-.
T Consensus 194 a~~~l~~~~~------~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~--~~~~~~~~~~~l~~~~ 264 (462)
T 1ibr_B 194 ATNALLNSLE------FTKANFDKES-ERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLY--YQYMETYMGPALFAIT 264 (462)
T ss_dssp HHHHHHHHTT------TTHHHHTSHH-HHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHC--GGGCTTTTTTTHHHHH
T ss_pred HHHHHHHHHH------HHHHhhhhhH-HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 7666666552 1111111000 00111222334556788888888999988887642 1223333442222222
Q ss_pred hhhhhcCCHHHHHHHHHHHHHh
Q 042013 280 FSSCLREDPTTRRWLQQLLHNV 301 (321)
Q Consensus 280 f~~~l~~D~~~k~~l~qLl~nl 301 (321)
+..+-..|+.++.--.++|.++
T Consensus 265 ~~~~~~~~~~v~~~a~~~l~~~ 286 (462)
T 1ibr_B 265 IEAMKSDIDEVALQGIEFWSNV 286 (462)
T ss_dssp HHHHHCSSHHHHHHHHHHHHHH
T ss_pred HHHHcCCchHHHHHHHHHHHHH
Confidence 2222244566665555555554
No 45
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=68.27 E-value=1.3e+02 Score=31.98 Aligned_cols=223 Identities=11% Similarity=0.099 Sum_probs=135.2
Q ss_pred CcchHHHHHHHHhhhhhcccchhhHHhhhhchHHHHHHHHHhhcCCCCCCCCChhhhhHHHHHHHHHHHHh--cCchhhh
Q 042013 49 NPDLRENALLELSKNKELFQDLAPFVWNSFGTIAALIQEIVSIYPVLSPPNLTPAQSNRVCNALALLQCVA--SHPDTRM 126 (321)
Q Consensus 49 ~p~~Re~AL~eLsk~re~~~~La~~LW~S~Gtia~LLQEIisiYp~Lspp~Lt~~~SnRVCnaLaLLQ~vA--shpetR~ 126 (321)
+++-||+|..-|+.--. .++.--.+... |.+..|++=+-+-.+ . . |- +|..-|.-++ .+|+.
T Consensus 508 s~~vqe~Aa~aL~NLA~-d~~~r~~Vv~~-Gaip~Lv~LL~s~~~---------~-~-k~-~Aa~AL~nL~~~~~p~~-- 571 (810)
T 3now_A 508 SHNSQELIARVLNAVCG-LKELRGKVVQE-GGVKALLRMALEGTE---------K-G-KR-HATQALARIGITINPEV-- 571 (810)
T ss_dssp CHHHHHHHHHHHHHHHT-SHHHHHHHHHT-THHHHHHHHHHSSCH---------H-H-HH-HHHHHHHHHHHHSCHHH--
T ss_pred CHHHHHHHHHHHHHHcC-CHHHHHHHHHC-CCHHHHHHHHccCCH---------H-H-HH-HHHHHHHHHhcCCChhh--
Confidence 56678877666555432 23344455555 999998877654321 1 1 21 2333333333 34443
Q ss_pred hhhh---hccccccccccccccCCCCcchhhhhhhhhhhhhcccCchHHHHHHhhhchhhhhhhhccccchhhHHHHHHH
Q 042013 127 LFLN---AHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKVDDTEVISFLLSTEIIPLCLRTMEMGSELSKTVATFI 203 (321)
Q Consensus 127 ~FL~---a~iplyLyPfL~ttsk~r~~E~LRLtSLGVIgaLvK~dd~evI~fLL~tEiiPLCLriME~GselSKtvAtfI 203 (321)
.|-. ....-.|.-+|+.. .....+.-++..++-|...+ .+......+...+|.+...|..+++.-+.-|...
T Consensus 572 ~~~~~~~~~aIppLv~LL~~~----~~~l~~~eAl~AL~NLa~~~-d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~ 646 (810)
T 3now_A 572 SFSGQRSLDVIRPLLNLLQQD----CTALENFESLMALTNLASMN-ESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQC 646 (810)
T ss_dssp HTTTHHHHHTHHHHHHTTSTT----SCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHH
T ss_pred hhcchhhhcHHHHHHHHhCCC----CcHHHHHHHHHHHHHHhcCC-HHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHH
Confidence 2211 11112223344321 11223445677777777664 3555567778899999999999999999999999
Q ss_pred HHHHhccccchhhhhhhhhHHHHHHHHHHHHHHHHhhCCChhhHHHHHHHHHHhhC-ChhhHHHHHhcCCcccchhhhhh
Q 042013 204 VQKILLDDVGLDYICTTAERFFAVGRVLGNMVAALAEQPSSRLLKHIIRCYLRLSD-NPRACDALRSCLPDMLRDATFSS 282 (321)
Q Consensus 204 lqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiirCYlRLs~-n~rar~aL~~~LP~~Lrd~~f~~ 282 (321)
+..|..++.....+.... .++.-+| .+...++..+-+...++.--|+. ++..+.++-+. ...+ +.+..
T Consensus 647 L~NLa~~~~~~~~~v~~~-------g~l~~Lv-~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~-~g~I--~~Lv~ 715 (810)
T 3now_A 647 LCNLVMSEDVIKMFEGNN-------DRVKFLA-LLCEDEDEETATACAGALAIITSVSVKCCEKILAI-ASWL--DILHT 715 (810)
T ss_dssp HHHHTTSHHHHHHHHSSS-------SHHHHHH-HGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTS-TTHH--HHHHH
T ss_pred HHHHhCChHHHHHHHhcc-------CcHHHHH-HHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHH-cCCH--HHHHH
Confidence 999999887655544222 2344333 45567889999999999999998 77766666542 1111 12223
Q ss_pred hh-cCCHHHHHHHHHHHHHhCC
Q 042013 283 CL-REDPTTRRWLQQLLHNVGV 303 (321)
Q Consensus 283 ~l-~~D~~~k~~l~qLl~nl~~ 303 (321)
++ .+|..+++.-.-.+.|+..
T Consensus 716 LL~s~d~~vq~~A~~aL~NL~~ 737 (810)
T 3now_A 716 LIANPSPAVQHRGIVIILNMIN 737 (810)
T ss_dssp HHTCSSHHHHHHHHHHHHHHHT
T ss_pred HHCCCCHHHHHHHHHHHHHHHh
Confidence 33 5788888888878888764
No 46
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=64.36 E-value=66 Score=34.22 Aligned_cols=148 Identities=14% Similarity=0.104 Sum_probs=85.0
Q ss_pred hHHHHHHHHhhhhhc-ccchhhHHhhhhchHHHHHHHHHhhcCCCCCCCCChh--hhhH-HHHHHHHHHHHhcCc-----
Q 042013 52 LRENALLELSKNKEL-FQDLAPFVWNSFGTIAALIQEIVSIYPVLSPPNLTPA--QSNR-VCNALALLQCVASHP----- 122 (321)
Q Consensus 52 ~Re~AL~eLsk~re~-~~~La~~LW~S~Gtia~LLQEIisiYp~Lspp~Lt~~--~SnR-VCnaLaLLQ~vAshp----- 122 (321)
.|++|..-|++---+ -|.++---....|.|..|+ ++.+..|.-..+.|+.+ .... ..+||.-|--+|+.|
T Consensus 517 ~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv-~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E 595 (778)
T 3opb_A 517 IRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLF-ELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGE 595 (778)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHH-HTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHH-HHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccch
Confidence 477888888875422 2333210011136666665 33332121111111111 1112 567888888999998
Q ss_pred hhhhhhhhh--ccccccccccccccCCCCcchhhhhhhhhhhhhcccCchHHH--HHHh-hhch----hhhhhhhccccc
Q 042013 123 DTRMLFLNA--HIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKVDDTEVI--SFLL-STEI----IPLCLRTMEMGS 193 (321)
Q Consensus 123 etR~~FL~a--~iplyLyPfL~ttsk~r~~E~LRLtSLGVIgaLvK~dd~evI--~fLL-~tEi----iPLCLriME~Gs 193 (321)
++|...++. -+|.... +|.. ..+.+|-++..+|+.|+.. ++.| .|+- +..- +++.+..++.+.
T Consensus 596 ~~r~~Ii~~~ga~~~L~~-LL~s-----~n~~VrrAA~elI~NL~~~--~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D 667 (778)
T 3opb_A 596 EVCKHIVSTKVYWSTIEN-LMLD-----ENVPLQRSTLELISNMMSH--PLTIAAKFFNLENPQSLRNFNILVKLLQLSD 667 (778)
T ss_dssp HHHHHHHHSHHHHHHHHH-GGGC-----SSHHHHHHHHHHHHHHHTS--GGGTGGGTSCCSSHHHHHHHHHHHHGGGCSC
T ss_pred HHHHHHHHhcCHHHHHHH-HHhC-----CCHHHHHHHHHHHHHHhCC--cHHHHHHHHhhcCchhhccHHHHHHHHcCCC
Confidence 578888885 3443333 3321 3568999999999999974 4433 3432 1112 777888888999
Q ss_pred hhhHHHHHHHHHHHh
Q 042013 194 ELSKTVATFIVQKIL 208 (321)
Q Consensus 194 elSKtvAtfIlqKIL 208 (321)
+-.|..|.-++.-+-
T Consensus 668 ~~~r~AAagALAnLt 682 (778)
T 3opb_A 668 VESQRAVAAIFANIA 682 (778)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc
Confidence 999988877665543
No 47
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=59.04 E-value=88 Score=32.66 Aligned_cols=178 Identities=16% Similarity=0.180 Sum_probs=108.3
Q ss_pred CCCccchhhhHHHHHHHhcCCcchHHHHHHHHhhhhhcccchhhHHhhhhchH--HHHHHHHHhhcCCCCCCCCChhhhh
Q 042013 29 AGANKDRKMASAEHLVLDLSNPDLRENALLELSKNKELFQDLAPFVWNSFGTI--AALIQEIVSIYPVLSPPNLTPAQSN 106 (321)
Q Consensus 29 ~~~~~~~~~~~v~q~I~~L~~p~~Re~AL~eLsk~re~~~~La~~LW~S~Gti--a~LLQEIisiYp~Lspp~Lt~~~Sn 106 (321)
+.++++...+.....+..=+-.+.|-.|++.|-.--..|| .++|.. ..|++=+- -+ .....
T Consensus 15 ~~qs~~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y~-------~~Vg~~~l~~li~~L~-~d---------~~D~e 77 (651)
T 3grl_A 15 PQHTEAETIQKLCDRVASSTLLDDRRNAVRALKSLSKKYR-------LEVGIQAMEHLIHVLQ-TD---------RSDSE 77 (651)
T ss_dssp ---CHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTTT-------THHHHHTHHHHHHHHH-SC---------TTCHH
T ss_pred CCCChhhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHhH-------HHhhhhhHHHHHHHHh-cc---------cccHH
Confidence 4566777777888888888889999999988855333333 344433 23333221 11 11222
Q ss_pred HHHHHHHHHHHHhc-Cc-------------hhhh----hhhhh--ccccccccccccccCCCCcchhhhhhhhhhhhhcc
Q 042013 107 RVCNALALLQCVAS-HP-------------DTRM----LFLNA--HIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVK 166 (321)
Q Consensus 107 RVCnaLaLLQ~vAs-hp-------------etR~----~FL~a--~iplyLyPfL~ttsk~r~~E~LRLtSLGVIgaLvK 166 (321)
=|..+|..|=.+-+ ++ ++.. .|++. +|++ |.-+|. ..-.|.|+.++..+.+|..
T Consensus 78 ~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~-Ll~lL~-----~~df~vR~~alqlL~~L~~ 151 (651)
T 3grl_A 78 IIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTL-LLSLLE-----EFDFHVRWPGVKLLTSLLK 151 (651)
T ss_dssp HHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHH-HHHHTT-----CCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHH-HHHHhc-----CccHHHHHHHHHHHHHHHh
Confidence 33344443322211 11 1111 23322 2332 122232 3568999999999999999
Q ss_pred cCchHHHHHHhhh-chhhhhhhhccccchhhHHHHHHHHHHHhccccchhhhhhh---hhHHHHHHH
Q 042013 167 VDDTEVISFLLST-EIIPLCLRTMEMGSELSKTVATFIVQKILLDDVGLDYICTT---AERFFAVGR 229 (321)
Q Consensus 167 ~dd~evI~fLL~t-EiiPLCLriME~GselSKtvAtfIlqKIL~dd~GL~YiC~t---~eRF~av~~ 229 (321)
+...++-+.+++. .=||-....++..+|.-+..|.-.+..+-.+..-++=+-+- +||.++|..
T Consensus 152 ~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~ 218 (651)
T 3grl_A 152 QLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIIT 218 (651)
T ss_dssp HSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred cCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHH
Confidence 9888899988866 78888899999999999999988888777776555554444 455555544
No 48
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=58.91 E-value=1.5e+02 Score=30.81 Aligned_cols=141 Identities=11% Similarity=0.148 Sum_probs=75.3
Q ss_pred hhhHHHHHHHhcCCcchHHHHHHHHhhhhhcccchhhHHhhhhchHHHHHHHHHhhcCCCCCCCCChhhhhHHHHHHHHH
Q 042013 36 KMASAEHLVLDLSNPDLRENALLELSKNKELFQDLAPFVWNSFGTIAALIQEIVSIYPVLSPPNLTPAQSNRVCNALALL 115 (321)
Q Consensus 36 ~~~~v~q~I~~L~~p~~Re~AL~eLsk~re~~~~La~~LW~S~Gtia~LLQEIisiYp~Lspp~Lt~~~SnRVCnaLaLL 115 (321)
|++.+.+.+....+|+....|-..|-. -+..|+. ...|++.+.+. +.....|...++.|=
T Consensus 3 d~~~l~~~L~~~~spd~~~rAe~~L~~-~~~~p~~----------~~~L~~il~~~---------~~~~~vR~~A~i~lk 62 (960)
T 1wa5_C 3 DLETVAKFLAESVIASTAKTSERNLRQ-LETQDGF----------GLTLLHVIAST---------NLPLSTRLAGALFFK 62 (960)
T ss_dssp HHHHHHHHHHHTTSGGGHHHHHHHHHH-HHTSTTH----------HHHHHHHHHCT---------TSCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhcCCCHHHHHHHHHHH-hhcCCCH----------HHHHHHHHhcC---------CCCHHHHHHHHHHHH
Confidence 567889999998888753326555532 2444542 22344333211 012234555555544
Q ss_pred HHHhcC----------chhhhhhhhhccccccccccccccCCCCcchhhhhhhhhhhhhcccCchHHHHHHhhhchhhhh
Q 042013 116 QCVASH----------PDTRMLFLNAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKVDDTEVISFLLSTEIIPLC 185 (321)
Q Consensus 116 Q~vAsh----------petR~~FL~a~iplyLyPfL~ttsk~r~~E~LRLtSLGVIgaLvK~dd~evI~fLL~tEiiPLC 185 (321)
..|..| |+--+..+|.++.-.|. . .+ ..+|-..=-+|+.+++.|-++ + ..|++|-.
T Consensus 63 n~i~~~w~~~~~~~~l~~~~k~~ik~~ll~~l~----~----~~-~~ir~~l~~~ia~ia~~d~p~--~---Wp~ll~~L 128 (960)
T 1wa5_C 63 NFIKRKWVDENGNHLLPANNVELIKKEIVPLMI----S----LP-NNLQVQIGEAISSIADSDFPD--R---WPTLLSDL 128 (960)
T ss_dssp HHHHHHSBCSSSCBSSCHHHHHHHHHHHHHHHH----H----SC-HHHHHHHHHHHHHHHHHHSTT--T---CTTHHHHH
T ss_pred HHHHhcCCCcccCCCCCHHHHHHHHHHHHHHHH----h----CC-HHHHHHHHHHHHHHHHhhCcc--c---hhHHHHHH
Confidence 444332 11222334444332221 1 11 455544444666666654331 1 25677777
Q ss_pred hhhccccchhhHHHHHHHHHHHhcc
Q 042013 186 LRTMEMGSELSKTVATFIVQKILLD 210 (321)
Q Consensus 186 LriME~GselSKtvAtfIlqKIL~d 210 (321)
+..+..++...+-.|..++.+|..+
T Consensus 129 ~~~l~s~~~~~~~~aL~~l~~i~~~ 153 (960)
T 1wa5_C 129 ASRLSNDDMVTNKGVLTVAHSIFKR 153 (960)
T ss_dssp HTTCCSSCTTHHHHHHHHHHHHHGG
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888888653
No 49
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=56.50 E-value=1.6e+02 Score=29.33 Aligned_cols=134 Identities=19% Similarity=0.219 Sum_probs=78.5
Q ss_pred HHHHHHhcCCc--chHHHHHHHHhhhhh--cccchhhHHhhhh--c--------hHHHHHHHHHhhcCCCCCC-C-----
Q 042013 40 AEHLVLDLSNP--DLRENALLELSKNKE--LFQDLAPFVWNSF--G--------TIAALIQEIVSIYPVLSPP-N----- 99 (321)
Q Consensus 40 v~q~I~~L~~p--~~Re~AL~eLsk~re--~~~~La~~LW~S~--G--------tia~LLQEIisiYp~Lspp-~----- 99 (321)
+..+..||.++ --|..||.-|+.-++ ..+++.+.+=... + +-+.-+--|...+|-+-++ .
T Consensus 113 iN~l~kDl~~~n~~ir~lALr~L~~i~~~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~~~~~~~~l 192 (621)
T 2vgl_A 113 NNAIKNDLASRNPTFMGLALHCIANVGSREMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPMGDWTSRV 192 (621)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHCCHHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCCCCSCHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcCchhHHHHH
Confidence 44566677754 459999999999764 3344444443332 1 1223345566778876652 2
Q ss_pred ---CChhhhhHHHHHHHHHHHHhcC-chhhhhhhhhccc---cccccccccccC--------CCCcchhhhhhhhhhhhh
Q 042013 100 ---LTPAQSNRVCNALALLQCVASH-PDTRMLFLNAHIP---LYLYPFLNTTSK--------SRPFEYLRLTSLGVIGAL 164 (321)
Q Consensus 100 ---Lt~~~SnRVCnaLaLLQ~vAsh-petR~~FL~a~ip---lyLyPfL~ttsk--------~r~~E~LRLtSLGVIgaL 164 (321)
|......-+.+|+++|..++.+ |+ .|. .-+| -+|..++....- .-+-|++++.-|..++.+
T Consensus 193 ~~lL~d~d~~V~~~a~~~l~~i~~~~~~---~~~-~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~ 268 (621)
T 2vgl_A 193 VHLLNDQHLGVVTAATSLITTLAQKNPE---EFK-TSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCY 268 (621)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHHHHCHH---HHT-THHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGS
T ss_pred HHHhCCCCccHHHHHHHHHHHHHHhChH---HHH-HHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHh
Confidence 3344445677899999998864 33 121 1122 123333322111 013588999999999999
Q ss_pred cccCchHHHHHHh
Q 042013 165 VKVDDTEVISFLL 177 (321)
Q Consensus 165 vK~dd~evI~fLL 177 (321)
.+.+|++.-+.+.
T Consensus 269 ~~~~d~~~~~~l~ 281 (621)
T 2vgl_A 269 PPPEDPAVRGRLT 281 (621)
T ss_dssp SSCSSHHHHHHHH
T ss_pred CCCCCHHHHHHHH
Confidence 8887777665443
No 50
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=52.94 E-value=65 Score=34.11 Aligned_cols=142 Identities=8% Similarity=0.135 Sum_probs=70.9
Q ss_pred CcchHHHHHHHHhhhhhcccchhhHHhhhhchHHHHHHHHHhhcCCCCCCCCChhhhhHHHHHHHHHHHHhcCchh--hh
Q 042013 49 NPDLRENALLELSKNKELFQDLAPFVWNSFGTIAALIQEIVSIYPVLSPPNLTPAQSNRVCNALALLQCVASHPDT--RM 126 (321)
Q Consensus 49 ~p~~Re~AL~eLsk~re~~~~La~~LW~S~Gtia~LLQEIisiYp~Lspp~Lt~~~SnRVCnaLaLLQ~vAshpet--R~ 126 (321)
+++.|..|+..|+.--+..++ ..+..+++.+... +. +.+...|...+-+|=+.+..-+.. ..
T Consensus 61 ~~~vR~~A~~~L~~l~~~~~~---------~~~~~i~~~Ll~~---l~----d~~~~vR~~a~~~L~~i~~~l~~~~~~~ 124 (1230)
T 1u6g_C 61 NGEVQNLAVKCLGPLVSKVKE---------YQVETIVDTLCTN---ML----SDKEQLRDISSIGLKTVIGELPPASSGS 124 (1230)
T ss_dssp SHHHHHHHHHHHHHHHTTSCH---------HHHHHHHHHHHHH---TT----CSSSHHHHHHHHHHHHHHHHCC-----C
T ss_pred CHHHHHHHHHHHHHHHHhCCH---------HHHHHHHHHHHHH---hc----CCcHHHHHHHHHHHHHHHHhCCCccccc
Confidence 566799998888764443322 1223344444433 22 122233544333333433322211 01
Q ss_pred hhhhhccccccccccccccCCCCcchhhhhhhhhhhhhcccCchHHHHHHhhhchhhhhhhhccccchhhHHHHHHHHHH
Q 042013 127 LFLNAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKVDDTEVISFLLSTEIIPLCLRTMEMGSELSKTVATFIVQK 206 (321)
Q Consensus 127 ~FL~a~iplyLyPfL~ttsk~r~~E~LRLtSLGVIgaLvK~dd~evI~fLL~tEiiPLCLriME~GselSKtvAtfIlqK 206 (321)
.+.....+ -+.|+|-..-+..+....|-.++.+++.+++.-...+..|+ .++++..+..++..+.--|..|.--+..
T Consensus 125 ~~~~~~~~-~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~--~~ll~~l~~~L~~~~~~vR~~a~~al~~ 201 (1230)
T 1u6g_C 125 ALAANVCK-KITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFH--PSILTCLLPQLTSPRLAVRKRTIIALGH 201 (1230)
T ss_dssp CTHHHHHH-HHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTH--HHHHHHHGGGGGCSSHHHHHHHHHHHHH
T ss_pred chHHHHHH-HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHH--HHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 11111111 24455533322233457889999999888764333333333 5677888888887665666666655555
Q ss_pred Hhc
Q 042013 207 ILL 209 (321)
Q Consensus 207 IL~ 209 (321)
+..
T Consensus 202 l~~ 204 (1230)
T 1u6g_C 202 LVM 204 (1230)
T ss_dssp HTT
T ss_pred HHH
Confidence 543
No 51
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=51.22 E-value=1.2e+02 Score=27.06 Aligned_cols=143 Identities=10% Similarity=-0.009 Sum_probs=95.3
Q ss_pred hhhhhhhhhhhhhcccCchHHHHHHhhhchhhhhhhhccccchhhHHHHHHHHHHHhcc-ccchhhhhhhhhHHHHHHHH
Q 042013 152 YLRLTSLGVIGALVKVDDTEVISFLLSTEIIPLCLRTMEMGSELSKTVATFIVQKILLD-DVGLDYICTTAERFFAVGRV 230 (321)
Q Consensus 152 ~LRLtSLGVIgaLvK~dd~evI~fLL~tEiiPLCLriME~GselSKtvAtfIlqKIL~d-d~GL~YiC~t~eRF~av~~v 230 (321)
.++....+.|.-|.+.+ ++....+.....||...+.+..+++--|..|.-.+..|=.+ ++.-..+.. +..
T Consensus 25 ~~q~~Aa~~l~~L~~~~-~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~~I~~--------~Ga 95 (233)
T 3tt9_A 25 SRISAAATFIQHECFQK-SEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLEVAE--------LNG 95 (233)
T ss_dssp HHHHHHHHHHHHHHHHC-HHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHH--------TTH
T ss_pred HHHHHHHHHHHHHHcCC-cHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHH--------cCC
Confidence 66677777787777543 34444556678899999999999999999999999988664 333322222 234
Q ss_pred HHHHHHHHhhCCChhhHHHHHHHHHHhhCChhhHHHHHh-cCCc---ccc---hhh----hhh-hhcCCHHHHHHHHHHH
Q 042013 231 LGNMVAALAEQPSSRLLKHIIRCYLRLSDNPRACDALRS-CLPD---MLR---DAT----FSS-CLREDPTTRRWLQQLL 298 (321)
Q Consensus 231 L~~mV~~l~~~ps~RLLKhiirCYlRLs~n~rar~aL~~-~LP~---~Lr---d~~----f~~-~l~~D~~~k~~l~qLl 298 (321)
+..+|.-|...++..+.+++...-.-||.++..|..+.+ .+|. .+. .|. ... --..|+.++..-..-|
T Consensus 96 I~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v~~na~~~L 175 (233)
T 3tt9_A 96 VPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCL 175 (233)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhccHHHHHHHHhccccCCcccccccccccchHHHHHHHHHHH
Confidence 566666666678899999999999999999888876653 2222 121 111 000 0013667777777777
Q ss_pred HHhCC
Q 042013 299 HNVGV 303 (321)
Q Consensus 299 ~nl~~ 303 (321)
.||..
T Consensus 176 ~nLss 180 (233)
T 3tt9_A 176 RNMSS 180 (233)
T ss_dssp HHHTT
T ss_pred HHHhc
Confidence 77764
No 52
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=50.99 E-value=1.2e+02 Score=32.31 Aligned_cols=162 Identities=15% Similarity=0.139 Sum_probs=100.1
Q ss_pred HHHHHHHhcC-CcchHHHHHHHHhhhhhcccchhhHHhhhhchHHHHHHHHHhhcCCCCCCCCChhhhhHHHHHHHHHHH
Q 042013 39 SAEHLVLDLS-NPDLRENALLELSKNKELFQDLAPFVWNSFGTIAALIQEIVSIYPVLSPPNLTPAQSNRVCNALALLQC 117 (321)
Q Consensus 39 ~v~q~I~~L~-~p~~Re~AL~eLsk~re~~~~La~~LW~S~Gtia~LLQEIisiYp~Lspp~Lt~~~SnRVCnaLaLLQ~ 117 (321)
.-..|+.++. +.+.|..|+.-|+|-+. ++..+ -+++.-|..-++.-- ..+ .....-.|+..|..
T Consensus 296 ~~~~~L~~~l~~~~ir~lAavvL~KL~~-~~~~~------~~si~~La~~~~~~L---~~~-----~~~~~~~AvEgLaY 360 (778)
T 3opb_A 296 NYLQLLERSLNVEDVQIYSALVLVKTWS-FTKLT------CINLKQLSEIFINAI---SRR-----IVPKVEMSVEALAY 360 (778)
T ss_dssp HHHHHHHHHTTSGGGHHHHHHHHHHHTG-GGTCT------TCCHHHHHHHHHHHT---TTC-----CHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhccHHHHHHHHHHHHHHhc-CCCCC------cCcHHHHHHHHHHHH---hcC-----CccHHHHHHHHHHH
Confidence 3446666666 34558888888888654 23321 245554443333221 111 12235678888999
Q ss_pred HhcCchhhhhhhhhcc-ccccccccccccCCCCcchhhhhhhhhhhhhcccCc---------------------------
Q 042013 118 VASHPDTRMLFLNAHI-PLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKVDD--------------------------- 169 (321)
Q Consensus 118 vAshpetR~~FL~a~i-plyLyPfL~ttsk~r~~E~LRLtSLGVIgaLvK~dd--------------------------- 169 (321)
+..+|++|..+.+..- ..=|.-.+++ +..-.+-...|.|++-+.+..+
T Consensus 361 LSl~~~VKe~L~~d~~~L~~Lv~llk~----~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d 436 (778)
T 3opb_A 361 LSLKASVKIMIRSNESFTEILLTMIKS----QKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVG 436 (778)
T ss_dssp HTTSSHHHHHHHHCHHHHHHHHHHHTT----TCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CC
T ss_pred HhCCHHHHHHHHhCHHHHHHHHHHHhC----CCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCccc
Confidence 9999999987765532 2223333332 2233444555555555544211
Q ss_pred ------hH----HHHHHhhhchhhhhhhhccccchhhHHHHHHHHHHHhccccchhhhhh
Q 042013 170 ------TE----VISFLLSTEIIPLCLRTMEMGSELSKTVATFIVQKILLDDVGLDYICT 219 (321)
Q Consensus 170 ------~e----vI~fLL~tEiiPLCLriME~GselSKtvAtfIlqKIL~dd~GL~YiC~ 219 (321)
.+ ....+++..+||........++.-+|..|.-++..|=.++.+...+++
T Consensus 437 ~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lvq 496 (778)
T 3opb_A 437 AEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQ 496 (778)
T ss_dssp THHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 12 345788889999999999999999999999999999888665555554
No 53
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=50.09 E-value=1.1e+02 Score=25.63 Aligned_cols=152 Identities=12% Similarity=0.127 Sum_probs=85.4
Q ss_pred cchhhhhhhhhhhhhcccCchHHHHHHhhhchhhhhhhhccccchhhHHHHHHHHHHHhccccchhhhhhhhhH------
Q 042013 150 FEYLRLTSLGVIGALVKVDDTEVISFLLSTEIIPLCLRTMEMGSELSKTVATFIVQKILLDDVGLDYICTTAER------ 223 (321)
Q Consensus 150 ~E~LRLtSLGVIgaLvK~dd~evI~fLL~tEiiPLCLriME~GselSKtvAtfIlqKIL~dd~GL~YiC~t~eR------ 223 (321)
.-.+|-..+.++|.|++.-.+++-.| -..++|..+..+...+...+.-|..-+..+... .++.-++...-.
T Consensus 70 ~~~V~~~a~~~l~~la~~l~~~~~~~--~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~-~~~~~ll~~l~~~l~~~~ 146 (242)
T 2qk2_A 70 NVVLVAMAGKCLALLAKGLAKRFSNY--ASACVPSLLEKFKEKKPNVVTALREAIDAIYAS-TSLEAQQESIVESLSNKN 146 (242)
T ss_dssp CHHHHHHHHHHHHHHHHHHGGGGHHH--HHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT-SCHHHHHHHHHHHTTCSC
T ss_pred CHHHHHHHHHHHHHHHHHHhhhHHHH--HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHcCCC
Confidence 44577788888888886433433333 245889999888777777777777777777653 233322211110
Q ss_pred ---HHHHHHHHHHHHHHHh-hCCChhhHHHHHHHHHHhh--CChhhHHHHHhcCCcc---cchhhhhhhhcC-CHHHHHH
Q 042013 224 ---FFAVGRVLGNMVAALA-EQPSSRLLKHIIRCYLRLS--DNPRACDALRSCLPDM---LRDATFSSCLRE-DPTTRRW 293 (321)
Q Consensus 224 ---F~av~~vL~~mV~~l~-~~ps~RLLKhiirCYlRLs--~n~rar~aL~~~LP~~---Lrd~~f~~~l~~-D~~~k~~ 293 (321)
-..+...|+.++.... +.....-++.++.....+- .+++.|++=..++... +.+..|...+.+ |+.-++.
T Consensus 147 ~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~~~~~l~~L~~~~~~~ 226 (242)
T 2qk2_A 147 PSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLADVDPLKMAK 226 (242)
T ss_dssp HHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHHHGGGGTTSCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHHHHHHHHHhcCHHHHHH
Confidence 1122223333332221 1122334445555555444 5667777766666553 334446665533 7777777
Q ss_pred HHHHHHHhCCC
Q 042013 294 LQQLLHNVGVN 304 (321)
Q Consensus 294 l~qLl~nl~~~ 304 (321)
+.+.+....++
T Consensus 227 i~~~~~~a~v~ 237 (242)
T 2qk2_A 227 IKECQEKAEIK 237 (242)
T ss_dssp HHHHHHHCCCC
T ss_pred HHHHHHHHHHh
Confidence 88777777654
No 54
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=46.60 E-value=14 Score=36.79 Aligned_cols=69 Identities=14% Similarity=0.173 Sum_probs=49.7
Q ss_pred cccccccCCCC-cchhhhhhhhhhhhhcccCch-HHHHHHhhhchhhhhhh-hccccchhhHHHHHHHHHHHh
Q 042013 139 PFLNTTSKSRP-FEYLRLTSLGVIGALVKVDDT-EVISFLLSTEIIPLCLR-TMEMGSELSKTVATFIVQKIL 208 (321)
Q Consensus 139 PfL~ttsk~r~-~E~LRLtSLGVIgaLvK~dd~-evI~fLL~tEiiPLCLr-iME~GselSKtvAtfIlqKIL 208 (321)
+|+......+. -+.+|-++++++|.|++.-.. ++..|+ ...++|-.++ .++.+++-.|..|.+.+..|-
T Consensus 799 ~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~-~~~~i~~ll~~~l~~~~~~~r~~a~~a~~~~~ 870 (876)
T 1qgr_A 799 SFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLVE-ARPMIHELLTEGRRSKTNKAKTLARWATKELR 870 (876)
T ss_dssp HHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHHHHHHH-TSHHHHHHHHHHHHCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCcHHHHHHH-hcHHHHHHHHHHhhcCCHhHHHHHHHHHHHHH
Confidence 55543323332 678999999999999886655 677676 4466666666 787888888999988877653
No 55
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=46.21 E-value=98 Score=28.80 Aligned_cols=29 Identities=17% Similarity=0.217 Sum_probs=19.0
Q ss_pred chhhhhhhhccccchhhHHHHHHHHHHHh
Q 042013 180 EIIPLCLRTMEMGSELSKTVATFIVQKIL 208 (321)
Q Consensus 180 EiiPLCLriME~GselSKtvAtfIlqKIL 208 (321)
+++|.+++.++....--|..|...+.++.
T Consensus 441 ~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~ 469 (588)
T 1b3u_A 441 KLNSLCMAWLVDHVYAIREAATSNLKKLV 469 (588)
T ss_dssp HHHHHHHHGGGCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence 57788888777666555555655555554
No 56
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=44.93 E-value=1.9e+02 Score=28.23 Aligned_cols=30 Identities=23% Similarity=0.430 Sum_probs=20.4
Q ss_pred CCCcchhhhhhhhhhhhhcccCc-hHHHHHHh
Q 042013 147 SRPFEYLRLTSLGVIGALVKVDD-TEVISFLL 177 (321)
Q Consensus 147 ~r~~E~LRLtSLGVIgaLvK~dd-~evI~fLL 177 (321)
+.+ +++|...|-+++.++..++ .+++.-|+
T Consensus 329 ~d~-~~Ir~~al~~L~~l~~~~nv~~iv~~L~ 359 (591)
T 2vgl_B 329 NDP-IYVKLEKLDIMIRLASQANIAQVLAELK 359 (591)
T ss_dssp TSC-HHHHHHHHHHHHHTCCSSTHHHHHHHHH
T ss_pred CCh-HHHHHHHHHHHHHHCChhhHHHHHHHHH
Confidence 455 8999999999998876543 33444333
No 57
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=36.04 E-value=2.1e+02 Score=29.03 Aligned_cols=109 Identities=12% Similarity=0.032 Sum_probs=80.5
Q ss_pred chhhhhhhhhhhhhcccCchHHHHHHhhhchhhhhhhhccccchhhHHHHHHHHHHHhcc--ccchhhhhhhhhHHHHHH
Q 042013 151 EYLRLTSLGVIGALVKVDDTEVISFLLSTEIIPLCLRTMEMGSELSKTVATFIVQKILLD--DVGLDYICTTAERFFAVG 228 (321)
Q Consensus 151 E~LRLtSLGVIgaLvK~dd~evI~fLL~tEiiPLCLriME~GselSKtvAtfIlqKIL~d--d~GL~YiC~t~eRF~av~ 228 (321)
+.++......+.-|.+. +.+....+.....||...+.+..+++--|..|+-.|..|-.. +..-..|.+ +
T Consensus 62 ~~~q~~Aa~~L~~La~~-~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~--------~ 132 (584)
T 3l6x_A 62 DAVKSNAAAYLQHLCYR-NDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKN--------C 132 (584)
T ss_dssp HHHHHHHHHHHHHHHTT-CHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHH--------T
T ss_pred HHHHHHHHHHHHHHHcC-ChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHH--------c
Confidence 44555555666666543 344455566778899999999999999999999999998763 343333322 2
Q ss_pred HHHHHHHHHHhhCCChhhHHHHHHHHHHhhCChhhHHHHH
Q 042013 229 RVLGNMVAALAEQPSSRLLKHIIRCYLRLSDNPRACDALR 268 (321)
Q Consensus 229 ~vL~~mV~~l~~~ps~RLLKhiirCYlRLs~n~rar~aL~ 268 (321)
..+..+|.-|...++..+.+++..|-.-||.++..+..+.
T Consensus 133 GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~ 172 (584)
T 3l6x_A 133 DGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIV 172 (584)
T ss_dssp THHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHH
T ss_pred CCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHH
Confidence 4567777777777788999999999999999998777764
No 58
>3dev_A SH1221; alpha-beta protein., structural genomics, PSI-2, protein STR initiative, northeast structural genomics consortium, NESG; 3.10A {Staphylococcus haemolyticus}
Probab=29.14 E-value=84 Score=29.25 Aligned_cols=54 Identities=19% Similarity=0.139 Sum_probs=45.7
Q ss_pred hchhhhhhhhccccchhhHHHHHHHHHHHhccccchhhhhhhhhHHHHHHHHHH
Q 042013 179 TEIIPLCLRTMEMGSELSKTVATFIVQKILLDDVGLDYICTTAERFFAVGRVLG 232 (321)
Q Consensus 179 tEiiPLCLriME~GselSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~ 232 (321)
+|||--.++-++.|-+++|.+|+-++.-|+.|=.++.|-..|++=|.+++..+.
T Consensus 127 ~eiv~~~~~~~~~~~~i~~~~A~~L~~GI~tDTg~F~~~~tt~~t~~aaa~L~~ 180 (320)
T 3dev_A 127 SEIIFDFISHFNDLSIIDEHVARVLYLGIVGDTGRFLFSNTSPHTMEVASQLLA 180 (320)
T ss_dssp HHHHHHHHHTTTCTTTCCHHHHHHHHHHHHHHTTTTTSTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHccCcCCCCCCHHHHHHHHHHHH
Confidence 366666667677788999999999999999999999998888888888888764
No 59
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=27.73 E-value=4.3e+02 Score=27.25 Aligned_cols=98 Identities=13% Similarity=0.179 Sum_probs=53.0
Q ss_pred hHHHHHHHHHHHHhcCchhhhhh-----hhhccccccccccccccCC------CC------------cchhhhhhhhhhh
Q 042013 106 NRVCNALALLQCVASHPDTRMLF-----LNAHIPLYLYPFLNTTSKS------RP------------FEYLRLTSLGVIG 162 (321)
Q Consensus 106 nRVCnaLaLLQ~vAshpetR~~F-----L~a~iplyLyPfL~ttsk~------r~------------~E~LRLtSLGVIg 162 (321)
.-++.++..+..++.++..+..| +..=+...+.|++..+... .| ++..|-++...+.
T Consensus 307 ~~~~~al~fl~~~~~~~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~ 386 (960)
T 1wa5_C 307 ILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLK 386 (960)
T ss_dssp HHHHHHHHHHHHHHTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHH
Confidence 34668999999999988777554 3333326778887533221 12 3356666666666
Q ss_pred hhcccCchHHHHHHhhhchhhhhhhhcc------ccchhhHHHHHHHHHHHh
Q 042013 163 ALVKVDDTEVISFLLSTEIIPLCLRTME------MGSELSKTVATFIVQKIL 208 (321)
Q Consensus 163 aLvK~dd~evI~fLL~tEiiPLCLriME------~GselSKtvAtfIlqKIL 208 (321)
.|.+....+++.- ++|.+...+. ...=..|-.|.+.+.-|.
T Consensus 387 ~l~~~~~~~v~~~-----~l~~i~~~l~~~~~~~~~~w~~reaal~algaia 433 (960)
T 1wa5_C 387 ELKEKNEVLVTNI-----FLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALA 433 (960)
T ss_dssp HHHHHCHHHHHHH-----HHHHHHHHHHHHHC----CHHHHHHHHHHHHHHH
T ss_pred HHHHHcchhHHHH-----HHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHH
Confidence 6665544444321 2233333332 111145556777666664
No 60
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=25.92 E-value=4.7e+02 Score=27.59 Aligned_cols=74 Identities=15% Similarity=0.152 Sum_probs=45.4
Q ss_pred ccccccccccccccCCCCcchhhhhhhhhhhhhcccCchHHHHHHhhhchhhhhhhhc-------------------ccc
Q 042013 132 HIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKVDDTEVISFLLSTEIIPLCLRTM-------------------EMG 192 (321)
Q Consensus 132 ~iplyLyPfL~ttsk~r~~E~LRLtSLGVIgaLvK~dd~evI~fLL~tEiiPLCLriM-------------------E~G 192 (321)
+++.++-|||..-... --.+|-..+++++++.+....-+-.++ .+++|..+... +-|
T Consensus 1003 ~l~~~~~~ll~~l~d~--~~~vr~~a~~~l~~~~~~~~~~~~~~l--~~~lp~l~~~~~~~~~~~~~v~~gp~k~~vd~~ 1078 (1230)
T 1u6g_C 1003 LLKNCIGDFLKTLEDP--DLNVRRVALVTFNSAAHNKPSLIRDLL--DTVLPHLYNETKVRKELIREVEMGPFKHTVDDG 1078 (1230)
T ss_dssp HHHHHSTTTHHHHSSS--STHHHHHHHHHHHHHHHHCGGGTGGGH--HHHHHHHHHTTSCCGGGEEEEEETTEEEEEETH
T ss_pred HHHHHHHHHHHhcCCC--cHHHHHHHHHHHHHHHhcChHhHHHHH--HHHHHHHHHHhcccHHhheeeccCCcccccCCc
Confidence 4445556666532222 235899999999999887554443444 45788776654 334
Q ss_pred chhhHHHHHHHHHHHhcc
Q 042013 193 SELSKTVATFIVQKILLD 210 (321)
Q Consensus 193 selSKtvAtfIlqKIL~d 210 (321)
-|.-|. |---+.+||..
T Consensus 1079 l~~rk~-a~~~~~~ll~~ 1095 (1230)
T 1u6g_C 1079 LDIRKA-AFECMYTLLDS 1095 (1230)
T ss_dssp HHHHHH-HHHHHHHHHHS
T ss_pred HHHHHH-HHHHHHHHHHH
Confidence 455555 66667777765
No 61
>3bwt_A Protein PUF4; pumilio, RNA binding, HO endonuclease, transcription, RNA binding protein; 2.69A {Saccharomyces cerevisiae} PDB: 4dzs_A 3bx2_A 3bx3_A
Probab=24.80 E-value=87 Score=28.33 Aligned_cols=8 Identities=38% Similarity=0.642 Sum_probs=3.5
Q ss_pred HHHHHHHh
Q 042013 201 TFIVQKIL 208 (321)
Q Consensus 201 tfIlqKIL 208 (321)
.+++||+|
T Consensus 134 n~Viqk~l 141 (333)
T 3bwt_A 134 NHVIQKCL 141 (333)
T ss_dssp HHHHHHHH
T ss_pred cHHHHHHH
Confidence 34444443
No 62
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=24.60 E-value=4.9e+02 Score=25.26 Aligned_cols=101 Identities=10% Similarity=0.103 Sum_probs=58.6
Q ss_pred HHHHHhcC--CcchHHHHHHHHhhhhhcccchhhHHhhhhchHHHHHHHHHhhcCCCCCCCCChhhhhHHHHHHHHHHHH
Q 042013 41 EHLVLDLS--NPDLRENALLELSKNKELFQDLAPFVWNSFGTIAALIQEIVSIYPVLSPPNLTPAQSNRVCNALALLQCV 118 (321)
Q Consensus 41 ~q~I~~L~--~p~~Re~AL~eLsk~re~~~~La~~LW~S~Gtia~LLQEIisiYp~Lspp~Lt~~~SnRVCnaLaLLQ~v 118 (321)
..+..||. ||.-|..||..|++.+ .|++++.+ +.+|... +. +.+..-|-..++++....
T Consensus 89 n~l~kdL~~~n~~ir~~AL~~L~~i~--~~~~~~~l----------~~~l~~~---L~----d~~~~VRk~A~~al~~i~ 149 (591)
T 2vgl_B 89 NSFVKDCEDPNPLIRALAVRTMGCIR--VDKITEYL----------CEPLRKC---LK----DEDPYVRKTAAVCVAKLH 149 (591)
T ss_dssp HHHGGGSSSSSHHHHHHHHHHHHTCC--SGGGHHHH----------HHHHHHH---SS----CSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHcCC--hHHHHHHH----------HHHHHHH---cC----CCChHHHHHHHHHHHHHH
Confidence 34445566 4555889999998876 34444333 3333322 22 234556666777777766
Q ss_pred hcCchhhhhhhhhccccccccccccccCCCCcchhhhhhhhhhhhhcccC
Q 042013 119 ASHPDTRMLFLNAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKVD 168 (321)
Q Consensus 119 AshpetR~~FL~a~iplyLyPfL~ttsk~r~~E~LRLtSLGVIgaLvK~d 168 (321)
..+|+.-.. +.+.-.|..+|+ .+...+|..+++.++.+.+.+
T Consensus 150 ~~~p~~~~~---~~~~~~l~~lL~-----d~d~~V~~~A~~aL~~i~~~~ 191 (591)
T 2vgl_B 150 DINAQMVED---QGFLDSLRDLIA-----DSNPMVVANAVAALSEISESH 191 (591)
T ss_dssp HSSCCCHHH---HHHHHHHHHTTS-----CSCHHHHHHHHHHHHHHTTSC
T ss_pred hhChhhccc---ccHHHHHHHHhC-----CCChhHHHHHHHHHHHHHhhC
Confidence 666764431 222223444553 233578889999998887754
No 63
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=23.65 E-value=5.3e+02 Score=25.27 Aligned_cols=62 Identities=10% Similarity=0.007 Sum_probs=33.9
Q ss_pred CcchhhhhhhhhhhhhcccCchHHHHHHhhhchhhhhhhhccccchhhHHHHHHHHHHHhcc
Q 042013 149 PFEYLRLTSLGVIGALVKVDDTEVISFLLSTEIIPLCLRTMEMGSELSKTVATFIVQKILLD 210 (321)
Q Consensus 149 ~~E~LRLtSLGVIgaLvK~dd~evI~fLL~tEiiPLCLriME~GselSKtvAtfIlqKIL~d 210 (321)
+-+.+|.+++.++++++..-+...-..--..++++.....++.+.+-.|..|..++.+|...
T Consensus 193 ~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~ 254 (861)
T 2bpt_A 193 TSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSK 254 (861)
T ss_dssp CCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 35789999999999876421111000000122444444455556666666677777776643
No 64
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=22.24 E-value=86 Score=27.51 Aligned_cols=57 Identities=12% Similarity=0.255 Sum_probs=45.1
Q ss_pred hhhhhhhhhhhhhcccCch--HHHHHHhhhchhhhhhhhccccchhhHHHHHHHHHHHh
Q 042013 152 YLRLTSLGVIGALVKVDDT--EVISFLLSTEIIPLCLRTMEMGSELSKTVATFIVQKIL 208 (321)
Q Consensus 152 ~LRLtSLGVIgaLvK~dd~--evI~fLL~tEiiPLCLriME~GselSKtvAtfIlqKIL 208 (321)
++|..++..|+.+++.-.. +.+...+..+|+|.+.+.|+-...--|..|+..+.+|.
T Consensus 161 ~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~ 219 (249)
T 2qk1_A 161 QIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILI 219 (249)
T ss_dssp HHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 8999999999999875442 44444455789999999999888888888888776653
Done!