Query 042014
Match_columns 169
No_of_seqs 149 out of 651
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 13:06:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042014.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042014hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4005 Transcription factor X 99.5 2E-13 4.3E-18 117.1 13.3 90 58-147 58-147 (292)
2 smart00338 BRLZ basic region l 99.5 5.4E-13 1.2E-17 91.7 9.3 61 66-126 2-62 (65)
3 PF00170 bZIP_1: bZIP transcri 99.4 2.1E-12 4.5E-17 88.7 9.2 62 67-128 3-64 (64)
4 KOG4343 bZIP transcription fac 99.3 5.7E-12 1.2E-16 117.5 7.2 66 68-133 280-345 (655)
5 PF07716 bZIP_2: Basic region 99.2 1.7E-10 3.8E-15 77.1 8.4 51 66-117 2-52 (54)
6 KOG0709 CREB/ATF family transc 98.9 1.2E-09 2.6E-14 100.5 6.4 69 67-142 249-317 (472)
7 KOG3584 cAMP response element 98.8 1.1E-08 2.4E-13 90.1 7.6 51 68-118 290-340 (348)
8 PF03131 bZIP_Maf: bZIP Maf tr 98.1 4.5E-08 9.8E-13 71.9 -5.8 53 67-119 28-80 (92)
9 KOG4571 Activating transcripti 97.9 6.8E-05 1.5E-09 66.1 8.5 54 65-118 222-276 (294)
10 KOG0837 Transcriptional activa 97.8 7.5E-05 1.6E-09 65.2 7.7 59 71-143 208-266 (279)
11 KOG4196 bZIP transcription fac 97.5 0.0025 5.5E-08 50.6 11.2 64 68-145 52-115 (135)
12 KOG3119 Basic region leucine z 97.2 0.0016 3.4E-08 56.4 8.4 46 71-116 196-241 (269)
13 PF06156 DUF972: Protein of un 96.6 0.017 3.8E-07 44.0 8.3 53 94-146 5-57 (107)
14 PF06005 DUF904: Protein of un 96.5 0.04 8.7E-07 39.4 9.2 53 91-143 5-64 (72)
15 COG3074 Uncharacterized protei 96.5 0.021 4.5E-07 41.4 7.6 53 92-144 20-72 (79)
16 TIGR02449 conserved hypothetic 96.4 0.039 8.5E-07 39.0 8.6 54 92-145 2-55 (65)
17 PRK15422 septal ring assembly 96.3 0.029 6.3E-07 41.1 7.7 53 92-144 20-72 (79)
18 PRK13169 DNA replication intia 96.2 0.042 9E-07 42.3 8.2 52 94-145 5-56 (110)
19 KOG3863 bZIP transcription fac 95.9 0.02 4.2E-07 55.1 6.5 64 70-140 491-554 (604)
20 PF06156 DUF972: Protein of un 95.9 0.056 1.2E-06 41.3 7.8 50 90-139 8-57 (107)
21 PRK13169 DNA replication intia 95.7 0.074 1.6E-06 41.0 7.8 50 90-139 8-57 (110)
22 PF02183 HALZ: Homeobox associ 95.5 0.069 1.5E-06 35.0 6.1 42 101-142 2-43 (45)
23 TIGR02449 conserved hypothetic 95.5 0.2 4.4E-06 35.4 8.8 57 90-146 7-63 (65)
24 PF14197 Cep57_CLD_2: Centroso 94.8 0.45 9.9E-06 33.7 9.0 56 89-144 11-66 (69)
25 COG4467 Regulator of replicati 94.8 0.18 4E-06 39.1 7.5 47 97-143 8-54 (114)
26 PRK10884 SH3 domain-containing 94.4 0.5 1.1E-05 39.7 9.9 45 89-133 124-168 (206)
27 PF08614 ATG16: Autophagy prot 94.0 2 4.4E-05 35.0 12.4 69 70-138 117-185 (194)
28 PF07989 Microtub_assoc: Micro 93.7 0.72 1.6E-05 33.1 8.2 54 92-145 2-63 (75)
29 PRK10884 SH3 domain-containing 93.6 0.72 1.6E-05 38.8 9.3 51 90-140 118-168 (206)
30 PRK13729 conjugal transfer pil 93.5 0.26 5.5E-06 46.5 7.1 52 89-140 75-126 (475)
31 PF14662 CCDC155: Coiled-coil 93.4 0.55 1.2E-05 39.6 8.3 55 92-146 3-57 (193)
32 PF06785 UPF0242: Uncharacteri 93.3 0.51 1.1E-05 43.2 8.3 61 85-145 122-182 (401)
33 COG4026 Uncharacterized protei 92.7 1.2 2.6E-05 39.0 9.5 59 89-147 141-206 (290)
34 COG4467 Regulator of replicati 92.2 0.55 1.2E-05 36.5 6.2 47 90-136 8-54 (114)
35 smart00340 HALZ homeobox assoc 92.1 0.39 8.4E-06 31.6 4.4 28 113-140 7-34 (44)
36 TIGR02894 DNA_bind_RsfA transc 92.0 1 2.2E-05 37.0 7.9 46 98-143 98-143 (161)
37 PF11180 DUF2968: Protein of u 92.0 6.8 0.00015 33.1 13.9 90 64-153 100-191 (192)
38 PF09726 Macoilin: Transmembra 92.0 4.3 9.4E-05 39.9 13.4 57 90-146 538-601 (697)
39 PF11559 ADIP: Afadin- and alp 91.9 2.8 6E-05 32.6 10.1 77 69-145 45-121 (151)
40 PF07888 CALCOCO1: Calcium bin 91.8 3.8 8.2E-05 39.4 12.6 77 69-145 150-226 (546)
41 PF11559 ADIP: Afadin- and alp 91.8 5 0.00011 31.2 14.3 55 87-141 70-124 (151)
42 PF04880 NUDE_C: NUDE protein, 91.7 0.32 6.9E-06 40.0 4.6 46 92-141 2-47 (166)
43 TIGR00219 mreC rod shape-deter 91.6 0.51 1.1E-05 41.1 6.1 35 98-132 67-105 (283)
44 PF10224 DUF2205: Predicted co 91.5 1.8 3.9E-05 31.7 8.0 45 93-137 19-63 (80)
45 PF02183 HALZ: Homeobox associ 91.4 0.88 1.9E-05 29.8 5.6 39 108-146 2-40 (45)
46 PRK02119 hypothetical protein; 91.3 4 8.6E-05 29.0 9.4 51 90-147 9-59 (73)
47 PF09304 Cortex-I_coil: Cortex 91.2 3.5 7.6E-05 31.9 9.6 55 71-125 18-72 (107)
48 PRK04406 hypothetical protein; 90.8 4.6 9.9E-05 28.9 9.4 53 94-146 8-60 (75)
49 PF07106 TBPIP: Tat binding pr 90.6 2.4 5.1E-05 33.7 8.6 56 92-147 81-138 (169)
50 PRK15422 septal ring assembly 90.5 3 6.5E-05 30.7 8.2 55 91-145 5-59 (79)
51 KOG4005 Transcription factor X 90.4 2.7 5.8E-05 37.0 9.3 52 90-141 97-148 (292)
52 PF07106 TBPIP: Tat binding pr 90.2 2 4.4E-05 34.1 7.9 51 89-139 85-137 (169)
53 PF04102 SlyX: SlyX; InterPro 90.0 2.2 4.9E-05 29.7 7.1 49 90-145 4-52 (69)
54 PF06005 DUF904: Protein of un 89.6 4.9 0.00011 28.7 8.6 51 91-141 19-69 (72)
55 PRK11637 AmiB activator; Provi 89.6 9.6 0.00021 34.5 12.6 60 81-140 66-125 (428)
56 PF12808 Mto2_bdg: Micro-tubul 89.4 1.2 2.6E-05 30.2 5.1 50 87-139 1-50 (52)
57 PF15058 Speriolin_N: Sperioli 89.3 1 2.3E-05 38.1 5.7 37 92-136 7-43 (200)
58 PF15294 Leu_zip: Leucine zipp 89.3 2.1 4.6E-05 37.9 7.9 51 95-145 130-180 (278)
59 PF11932 DUF3450: Protein of u 89.1 7.5 0.00016 32.8 10.9 53 86-138 52-104 (251)
60 PRK04325 hypothetical protein; 88.9 4.6 0.0001 28.7 8.1 49 91-146 10-58 (74)
61 PRK00846 hypothetical protein; 88.7 6.6 0.00014 28.5 8.9 52 90-148 13-64 (77)
62 PF09744 Jnk-SapK_ap_N: JNK_SA 88.6 10 0.00022 30.8 10.9 52 92-143 91-142 (158)
63 PF14197 Cep57_CLD_2: Centroso 88.5 3.5 7.7E-05 29.1 7.2 48 91-138 20-67 (69)
64 PF10224 DUF2205: Predicted co 88.3 4.8 0.0001 29.4 8.0 58 90-147 8-66 (80)
65 KOG0977 Nuclear envelope prote 88.0 3.8 8.2E-05 39.4 9.2 63 80-142 131-193 (546)
66 PF11932 DUF3450: Protein of u 87.6 11 0.00023 31.8 10.9 40 91-130 64-103 (251)
67 PF12325 TMF_TATA_bd: TATA ele 87.3 7.6 0.00016 30.2 9.1 22 121-142 92-113 (120)
68 PRK02793 phi X174 lysis protei 87.0 8.7 0.00019 27.2 9.2 51 90-147 8-58 (72)
69 PRK13922 rod shape-determining 86.9 2 4.3E-05 36.5 6.2 39 90-132 69-107 (276)
70 PF14662 CCDC155: Coiled-coil 86.9 5.1 0.00011 33.8 8.4 52 91-142 9-60 (193)
71 PF08614 ATG16: Autophagy prot 86.7 16 0.00034 29.8 11.2 61 83-143 123-183 (194)
72 COG3883 Uncharacterized protei 86.6 6.5 0.00014 34.6 9.3 60 87-149 56-115 (265)
73 PF00170 bZIP_1: bZIP transcri 86.4 3.3 7.2E-05 27.9 5.9 33 113-145 28-60 (64)
74 PRK00295 hypothetical protein; 86.3 8.6 0.00019 26.9 8.1 49 90-145 5-53 (68)
75 TIGR03752 conj_TIGR03752 integ 86.2 4.8 0.0001 38.1 8.7 55 91-145 74-136 (472)
76 PRK00888 ftsB cell division pr 86.1 3.5 7.5E-05 31.1 6.4 32 87-118 31-62 (105)
77 KOG1414 Transcriptional activa 86.1 0.031 6.8E-07 50.7 -5.5 53 65-117 150-206 (395)
78 PRK02119 hypothetical protein; 85.7 6.9 0.00015 27.8 7.5 21 92-112 4-24 (73)
79 PF04849 HAP1_N: HAP1 N-termin 85.6 6.3 0.00014 35.4 8.8 55 91-145 242-296 (306)
80 PRK11637 AmiB activator; Provi 85.5 23 0.0005 32.1 12.6 64 74-137 182-252 (428)
81 PRK09039 hypothetical protein; 85.1 6.6 0.00014 35.1 8.8 51 94-144 134-184 (343)
82 PF04102 SlyX: SlyX; InterPro 85.0 7.9 0.00017 26.9 7.4 18 95-112 2-19 (69)
83 KOG4196 bZIP transcription fac 84.9 4.6 9.9E-05 32.4 6.8 27 120-146 76-102 (135)
84 KOG1962 B-cell receptor-associ 84.3 4.6 0.0001 34.6 7.1 25 109-133 184-208 (216)
85 KOG3650 Predicted coiled-coil 84.0 5.6 0.00012 30.9 6.7 40 109-148 68-107 (120)
86 PRK00888 ftsB cell division pr 84.0 3.2 6.9E-05 31.3 5.4 31 109-139 32-62 (105)
87 PF09738 DUF2051: Double stran 83.8 9 0.0002 34.1 9.0 79 65-143 88-172 (302)
88 PF08317 Spc7: Spc7 kinetochor 83.8 10 0.00022 33.4 9.2 56 90-145 209-264 (325)
89 KOG0250 DNA repair protein RAD 83.7 20 0.00042 37.3 12.2 63 81-143 370-433 (1074)
90 PF01166 TSC22: TSC-22/dip/bun 83.3 1.7 3.6E-05 30.4 3.3 29 105-133 15-43 (59)
91 COG4026 Uncharacterized protei 83.0 10 0.00022 33.3 8.7 58 87-144 132-189 (290)
92 PHA02562 46 endonuclease subun 82.9 31 0.00068 31.6 12.4 42 92-133 360-401 (562)
93 TIGR02209 ftsL_broad cell divi 82.5 6.9 0.00015 27.3 6.3 31 108-138 28-58 (85)
94 PF04728 LPP: Lipoprotein leuc 82.3 14 0.0003 25.5 8.2 46 91-143 4-49 (56)
95 PRK02793 phi X174 lysis protei 82.3 12 0.00026 26.5 7.5 22 94-115 5-26 (72)
96 PF05103 DivIVA: DivIVA protei 82.3 1.1 2.5E-05 33.4 2.4 52 90-141 25-76 (131)
97 PF04977 DivIC: Septum formati 82.1 9.2 0.0002 25.9 6.8 29 88-116 22-50 (80)
98 PF12718 Tropomyosin_1: Tropom 81.8 15 0.00033 29.0 8.7 42 91-132 15-56 (143)
99 PF12325 TMF_TATA_bd: TATA ele 81.8 22 0.00048 27.6 11.2 40 70-109 24-63 (120)
100 smart00338 BRLZ basic region l 81.7 8.2 0.00018 26.0 6.3 33 113-145 28-60 (65)
101 PF09755 DUF2046: Uncharacteri 81.7 9 0.0002 34.5 8.2 48 93-140 23-70 (310)
102 KOG1414 Transcriptional activa 81.6 0.23 4.9E-06 45.2 -2.0 46 65-110 281-326 (395)
103 PF09789 DUF2353: Uncharacteri 81.4 17 0.00037 32.8 9.8 45 94-138 69-113 (319)
104 PF05266 DUF724: Protein of un 81.2 30 0.00065 28.7 11.4 81 65-145 85-179 (190)
105 PF13747 DUF4164: Domain of un 81.2 19 0.00041 26.4 11.5 75 69-143 11-85 (89)
106 PF08172 CASP_C: CASP C termin 81.1 9.8 0.00021 32.9 8.0 41 90-137 93-133 (248)
107 KOG3119 Basic region leucine z 81.1 22 0.00048 30.9 10.2 32 114-145 218-249 (269)
108 PF07407 Seadorna_VP6: Seadorn 81.1 3.2 6.9E-05 38.2 5.1 32 98-131 33-64 (420)
109 PRK10803 tol-pal system protei 81.0 8.5 0.00018 33.1 7.6 50 91-140 55-104 (263)
110 PF12711 Kinesin-relat_1: Kine 80.8 10 0.00022 28.2 6.9 41 101-141 21-67 (86)
111 PF08647 BRE1: BRE1 E3 ubiquit 80.4 21 0.00044 26.3 11.3 73 73-145 7-79 (96)
112 PRK09039 hypothetical protein; 80.2 44 0.00095 29.9 12.1 7 80-86 92-98 (343)
113 KOG1853 LIS1-interacting prote 80.2 44 0.00096 30.0 13.2 58 91-148 53-121 (333)
114 COG4942 Membrane-bound metallo 80.1 25 0.00055 32.9 10.8 40 87-126 56-95 (420)
115 PF10186 Atg14: UV radiation r 80.0 33 0.00072 28.5 12.6 18 91-108 85-102 (302)
116 PF13935 Ead_Ea22: Ead/Ea22-li 79.9 21 0.00046 27.9 8.9 46 99-144 92-138 (139)
117 PF15035 Rootletin: Ciliary ro 79.9 16 0.00035 30.1 8.6 44 98-141 75-118 (182)
118 PF05812 Herpes_BLRF2: Herpesv 79.8 3.6 7.8E-05 32.3 4.4 30 88-117 1-30 (118)
119 PF04999 FtsL: Cell division p 79.7 9 0.00019 27.6 6.3 40 99-138 30-69 (97)
120 KOG1962 B-cell receptor-associ 79.5 30 0.00065 29.7 10.3 53 90-142 158-210 (216)
121 KOG4797 Transcriptional regula 79.4 5 0.00011 31.4 5.1 30 104-133 67-96 (123)
122 KOG2010 Double stranded RNA bi 79.4 20 0.00043 33.0 9.6 76 65-143 123-207 (405)
123 PF07798 DUF1640: Protein of u 79.3 16 0.00035 29.4 8.3 15 102-116 78-92 (177)
124 PRK00295 hypothetical protein; 79.0 19 0.00042 25.1 8.0 11 96-106 4-14 (68)
125 KOG2077 JNK/SAPK-associated pr 79.0 7.8 0.00017 38.2 7.3 52 93-144 325-376 (832)
126 PF10211 Ax_dynein_light: Axon 78.8 32 0.0007 28.3 10.1 41 92-132 122-162 (189)
127 PF06785 UPF0242: Uncharacteri 78.7 25 0.00054 32.5 10.0 75 69-147 75-163 (401)
128 PF08172 CASP_C: CASP C termin 78.5 17 0.00036 31.4 8.6 52 96-147 85-136 (248)
129 PRK14127 cell division protein 78.5 5.9 0.00013 30.5 5.2 28 119-146 38-65 (109)
130 TIGR03752 conj_TIGR03752 integ 78.3 7.9 0.00017 36.7 7.0 38 109-146 107-144 (472)
131 PRK00736 hypothetical protein; 78.2 20 0.00044 25.0 8.0 50 90-146 5-54 (68)
132 PF15070 GOLGA2L5: Putative go 77.9 38 0.00082 33.0 11.6 73 74-146 106-181 (617)
133 PRK04325 hypothetical protein; 77.9 22 0.00047 25.2 7.7 47 91-144 3-49 (74)
134 KOG4571 Activating transcripti 77.8 16 0.00036 32.7 8.5 35 111-145 248-282 (294)
135 PRK04406 hypothetical protein; 77.7 22 0.00048 25.4 7.7 49 90-138 11-59 (75)
136 PF04340 DUF484: Protein of un 77.4 15 0.00033 30.3 7.9 43 94-140 44-86 (225)
137 PF04977 DivIC: Septum formati 77.4 8.2 0.00018 26.2 5.3 30 108-137 21-50 (80)
138 PRK00736 hypothetical protein; 77.2 22 0.00048 24.8 7.6 9 97-105 5-13 (68)
139 PF11365 DUF3166: Protein of u 77.1 16 0.00035 27.6 7.2 40 103-142 7-46 (96)
140 PRK10803 tol-pal system protei 76.5 13 0.00028 31.9 7.4 40 87-126 58-97 (263)
141 PHA03162 hypothetical protein; 76.2 2.2 4.9E-05 34.1 2.4 29 87-115 10-38 (135)
142 PF07558 Shugoshin_N: Shugoshi 76.1 3.5 7.5E-05 27.0 2.9 34 101-134 11-44 (46)
143 PF10805 DUF2730: Protein of u 76.0 30 0.00064 26.0 8.4 30 89-118 48-79 (106)
144 PF09728 Taxilin: Myosin-like 76.0 24 0.00052 31.2 9.1 56 90-145 244-299 (309)
145 PRK10963 hypothetical protein; 76.0 13 0.00029 31.1 7.1 37 97-137 44-80 (223)
146 COG4942 Membrane-bound metallo 75.7 56 0.0012 30.7 11.7 54 91-147 74-127 (420)
147 KOG0250 DNA repair protein RAD 75.3 27 0.00058 36.3 10.1 63 84-146 366-429 (1074)
148 PF12329 TMF_DNA_bd: TATA elem 74.9 27 0.00058 24.7 9.0 58 88-145 10-67 (74)
149 KOG0982 Centrosomal protein Nu 74.9 60 0.0013 31.0 11.6 53 91-143 298-350 (502)
150 KOG0946 ER-Golgi vesicle-tethe 74.6 33 0.00072 35.0 10.4 66 81-146 662-727 (970)
151 PF12718 Tropomyosin_1: Tropom 74.3 38 0.00081 26.8 8.9 23 92-114 37-59 (143)
152 KOG4643 Uncharacterized coiled 73.9 52 0.0011 34.4 11.7 79 68-146 372-450 (1195)
153 PF10146 zf-C4H2: Zinc finger- 73.8 28 0.0006 29.9 8.6 53 88-140 48-103 (230)
154 PF08826 DMPK_coil: DMPK coile 73.4 28 0.00061 24.2 7.8 43 96-145 17-59 (61)
155 PF04849 HAP1_N: HAP1 N-termin 73.2 33 0.00072 30.9 9.2 27 108-134 238-264 (306)
156 PF00038 Filament: Intermediat 73.0 37 0.00081 28.9 9.3 31 88-118 221-251 (312)
157 COG2433 Uncharacterized conser 72.7 17 0.00038 35.6 7.8 27 91-117 437-463 (652)
158 PHA03155 hypothetical protein; 72.6 5.4 0.00012 31.2 3.6 26 90-115 8-33 (115)
159 PF14915 CCDC144C: CCDC144C pr 72.6 44 0.00095 30.2 9.8 64 78-141 181-244 (305)
160 KOG4643 Uncharacterized coiled 72.4 22 0.00048 37.0 8.7 60 74-133 502-576 (1195)
161 KOG2391 Vacuolar sorting prote 72.4 45 0.00097 30.8 9.9 56 88-143 223-278 (365)
162 PF04111 APG6: Autophagy prote 72.2 70 0.0015 28.3 14.1 70 82-151 70-139 (314)
163 PF07716 bZIP_2: Basic region 72.2 14 0.00031 24.2 5.2 27 113-139 27-53 (54)
164 PRK00846 hypothetical protein; 71.9 35 0.00077 24.8 7.7 20 95-114 32-51 (77)
165 COG1579 Zn-ribbon protein, pos 71.8 67 0.0014 27.9 12.0 10 153-162 192-201 (239)
166 TIGR02894 DNA_bind_RsfA transc 71.4 40 0.00086 27.8 8.6 12 67-78 64-75 (161)
167 PF00038 Filament: Intermediat 71.4 49 0.0011 28.2 9.7 36 88-123 214-249 (312)
168 PF05667 DUF812: Protein of un 70.8 29 0.00063 33.6 8.9 45 91-135 336-380 (594)
169 PF10828 DUF2570: Protein of u 70.8 42 0.00091 25.1 9.6 58 92-149 34-91 (110)
170 KOG0288 WD40 repeat protein Ti 70.5 49 0.0011 31.3 10.0 48 68-115 26-73 (459)
171 PF13863 DUF4200: Domain of un 70.4 41 0.0009 24.9 9.4 49 68-116 59-107 (126)
172 PF04111 APG6: Autophagy prote 70.4 32 0.00069 30.5 8.5 56 88-143 62-117 (314)
173 COG3074 Uncharacterized protei 69.9 40 0.00087 24.6 8.3 40 92-131 6-45 (79)
174 PF03980 Nnf1: Nnf1 ; InterPr 69.4 11 0.00023 27.9 4.5 28 88-115 78-105 (109)
175 PF05377 FlaC_arch: Flagella a 69.1 26 0.00057 24.1 6.0 14 92-105 2-15 (55)
176 KOG0709 CREB/ATF family transc 68.8 16 0.00035 34.6 6.6 55 64-118 250-314 (472)
177 KOG0995 Centromere-associated 68.5 53 0.0011 32.1 10.0 46 96-141 279-324 (581)
178 TIGR02209 ftsL_broad cell divi 68.1 25 0.00053 24.4 6.0 31 87-117 28-58 (85)
179 PF05700 BCAS2: Breast carcino 67.8 38 0.00083 28.3 8.1 34 112-145 176-209 (221)
180 PHA03011 hypothetical protein; 67.7 51 0.0011 25.7 8.0 56 89-144 63-118 (120)
181 PF04156 IncA: IncA protein; 67.6 60 0.0013 25.7 13.7 72 74-145 114-185 (191)
182 cd07429 Cby_like Chibby, a nuc 67.3 18 0.00039 27.9 5.5 23 122-144 83-105 (108)
183 PF05667 DUF812: Protein of un 67.1 46 0.00099 32.4 9.4 57 86-142 324-380 (594)
184 PF13815 Dzip-like_N: Iguana/D 66.8 29 0.00063 26.3 6.6 37 102-138 78-114 (118)
185 KOG1029 Endocytic adaptor prot 66.8 1.4E+02 0.0029 31.0 12.6 16 127-142 439-454 (1118)
186 PF05377 FlaC_arch: Flagella a 66.7 27 0.0006 24.0 5.7 26 92-117 9-34 (55)
187 PF05266 DUF724: Protein of un 66.3 75 0.0016 26.4 11.4 61 84-144 125-185 (190)
188 PF12709 Kinetocho_Slk19: Cent 66.3 31 0.00068 25.7 6.4 21 92-112 51-71 (87)
189 KOG1103 Predicted coiled-coil 65.8 57 0.0012 30.7 9.3 67 79-145 227-293 (561)
190 PF09789 DUF2353: Uncharacteri 65.8 20 0.00044 32.3 6.4 68 79-146 19-100 (319)
191 PRK04863 mukB cell division pr 65.5 1.2E+02 0.0025 32.8 12.6 20 69-88 321-340 (1486)
192 PF09738 DUF2051: Double stran 65.4 50 0.0011 29.5 8.7 53 91-143 113-165 (302)
193 PF10473 CENP-F_leu_zip: Leuci 64.8 71 0.0015 25.5 12.1 71 68-145 30-100 (140)
194 KOG4343 bZIP transcription fac 64.6 33 0.00072 33.5 7.8 29 117-145 308-336 (655)
195 PF04728 LPP: Lipoprotein leuc 64.6 44 0.00095 23.0 8.3 40 91-133 11-50 (56)
196 KOG2264 Exostosin EXT1L [Signa 64.6 74 0.0016 31.8 10.2 59 89-147 92-150 (907)
197 PF15035 Rootletin: Ciliary ro 64.3 61 0.0013 26.7 8.5 28 95-122 86-113 (182)
198 PF12709 Kinetocho_Slk19: Cent 64.3 43 0.00093 25.0 6.8 25 93-117 45-69 (87)
199 COG3883 Uncharacterized protei 64.3 64 0.0014 28.5 9.0 59 87-145 35-93 (265)
200 PF05911 DUF869: Plant protein 64.3 38 0.00083 34.0 8.5 53 89-141 91-164 (769)
201 PF09730 BicD: Microtubule-ass 63.9 50 0.0011 33.0 9.1 48 92-139 71-118 (717)
202 PF03670 UPF0184: Uncharacteri 63.7 58 0.0013 24.1 7.4 38 91-135 34-71 (83)
203 PRK04863 mukB cell division pr 63.6 95 0.0021 33.5 11.6 29 129-157 408-436 (1486)
204 KOG1853 LIS1-interacting prote 63.1 77 0.0017 28.5 9.3 25 123-147 162-186 (333)
205 PF14817 HAUS5: HAUS augmin-li 62.9 56 0.0012 32.1 9.2 29 89-117 99-127 (632)
206 KOG3650 Predicted coiled-coil 62.8 45 0.00096 25.9 6.9 44 97-140 63-106 (120)
207 PRK13922 rod shape-determining 62.5 82 0.0018 26.6 9.2 44 96-143 68-111 (276)
208 PF10506 MCC-bdg_PDZ: PDZ doma 62.4 53 0.0011 23.2 7.0 48 94-141 2-49 (67)
209 PF14988 DUF4515: Domain of un 62.2 94 0.002 26.1 10.0 44 97-140 156-199 (206)
210 COG1196 Smc Chromosome segrega 62.0 1.4E+02 0.003 30.9 12.1 57 88-144 437-493 (1163)
211 PF05700 BCAS2: Breast carcino 61.9 92 0.002 26.0 9.3 36 109-144 180-215 (221)
212 COG1792 MreC Cell shape-determ 61.6 32 0.00068 30.1 6.7 32 102-133 71-105 (284)
213 PF10883 DUF2681: Protein of u 61.5 63 0.0014 24.0 7.3 41 95-135 21-63 (87)
214 KOG0612 Rho-associated, coiled 61.3 2.3E+02 0.0051 30.3 13.5 21 8-28 347-369 (1317)
215 TIGR01843 type_I_hlyD type I s 61.1 1.1E+02 0.0024 26.5 11.3 23 129-151 257-279 (423)
216 KOG0288 WD40 repeat protein Ti 61.0 1.5E+02 0.0033 28.1 12.7 42 93-134 30-71 (459)
217 PF05837 CENP-H: Centromere pr 60.8 50 0.0011 24.7 6.8 26 92-117 19-44 (106)
218 PF05278 PEARLI-4: Arabidopsis 60.6 1.2E+02 0.0027 26.9 12.4 57 89-145 206-262 (269)
219 PF01486 K-box: K-box region; 60.5 40 0.00087 24.5 6.1 26 109-134 73-98 (100)
220 KOG4674 Uncharacterized conser 60.4 64 0.0014 35.5 9.7 65 82-146 1235-1299(1822)
221 COG1579 Zn-ribbon protein, pos 60.3 1.2E+02 0.0025 26.5 12.4 46 73-118 35-80 (239)
222 PF07334 IFP_35_N: Interferon- 60.2 18 0.00039 26.3 4.1 25 121-145 3-27 (76)
223 PF04642 DUF601: Protein of un 59.7 12 0.00026 33.3 3.7 56 91-146 218-273 (311)
224 KOG0971 Microtubule-associated 59.5 1.1E+02 0.0024 32.0 10.7 50 93-142 328-392 (1243)
225 TIGR00606 rad50 rad50. This fa 59.4 2E+02 0.0043 30.2 12.9 66 76-141 843-911 (1311)
226 KOG0995 Centromere-associated 59.3 1.2E+02 0.0026 29.7 10.5 47 88-134 278-324 (581)
227 PF04899 MbeD_MobD: MbeD/MobD 59.2 62 0.0013 23.0 9.0 39 108-146 25-63 (70)
228 PF10226 DUF2216: Uncharacteri 59.2 1.1E+02 0.0023 26.1 9.1 78 68-145 22-121 (195)
229 KOG3156 Uncharacterized membra 59.2 73 0.0016 27.5 8.2 42 102-143 99-141 (220)
230 KOG3335 Predicted coiled-coil 58.8 24 0.00051 29.7 5.1 43 65-113 87-129 (181)
231 KOG4360 Uncharacterized coiled 58.8 75 0.0016 31.0 9.0 39 92-130 221-259 (596)
232 PF01166 TSC22: TSC-22/dip/bun 58.7 18 0.0004 25.2 3.8 21 93-113 17-37 (59)
233 PF03980 Nnf1: Nnf1 ; InterPr 58.6 25 0.00055 25.9 4.8 31 109-139 78-108 (109)
234 PF01486 K-box: K-box region; 58.6 31 0.00067 25.1 5.3 23 91-113 76-98 (100)
235 PRK13729 conjugal transfer pil 58.0 70 0.0015 30.5 8.6 56 89-144 68-123 (475)
236 PF07412 Geminin: Geminin; In 57.9 74 0.0016 27.1 8.0 45 102-146 123-170 (200)
237 PF10482 CtIP_N: Tumour-suppre 57.8 92 0.002 24.6 8.4 49 90-138 14-62 (120)
238 PF05335 DUF745: Protein of un 57.8 1.1E+02 0.0024 25.5 9.4 60 86-145 63-122 (188)
239 PF12777 MT: Microtubule-bindi 57.7 92 0.002 27.6 9.0 38 71-108 223-260 (344)
240 PF09730 BicD: Microtubule-ass 57.3 50 0.0011 33.0 7.9 46 97-142 97-145 (717)
241 PF05557 MAD: Mitotic checkpoi 57.2 89 0.0019 30.4 9.5 28 124-151 565-592 (722)
242 PF09311 Rab5-bind: Rabaptin-l 57.0 4 8.8E-05 33.2 0.3 50 95-144 27-76 (181)
243 smart00787 Spc7 Spc7 kinetocho 57.0 1E+02 0.0023 27.4 9.2 6 8-13 19-24 (312)
244 PF04136 Sec34: Sec34-like fam 56.8 1E+02 0.0022 24.6 8.4 52 92-143 23-74 (157)
245 KOG0982 Centrosomal protein Nu 56.6 62 0.0014 30.9 8.0 26 120-145 306-331 (502)
246 smart00787 Spc7 Spc7 kinetocho 56.5 81 0.0018 28.1 8.4 54 92-145 146-199 (312)
247 PF00769 ERM: Ezrin/radixin/mo 56.4 1.3E+02 0.0028 25.7 10.9 50 92-141 63-119 (246)
248 PRK10920 putative uroporphyrin 56.2 1.1E+02 0.0024 28.2 9.5 26 119-144 100-125 (390)
249 KOG0161 Myosin class II heavy 55.9 1.9E+02 0.0041 32.3 12.3 57 90-146 1477-1540(1930)
250 PF10174 Cast: RIM-binding pro 55.6 2.4E+02 0.0051 28.6 12.9 59 86-144 297-355 (775)
251 KOG0804 Cytoplasmic Zn-finger 55.4 1.9E+02 0.0041 27.8 10.9 73 72-144 367-447 (493)
252 PF09304 Cortex-I_coil: Cortex 55.2 97 0.0021 24.0 12.6 65 79-143 5-69 (107)
253 PF05529 Bap31: B-cell recepto 55.2 1.1E+02 0.0024 24.6 9.0 37 103-139 153-189 (192)
254 PF13815 Dzip-like_N: Iguana/D 55.1 89 0.0019 23.6 8.4 40 106-145 75-114 (118)
255 PF10212 TTKRSYEDQ: Predicted 55.0 1E+02 0.0022 29.8 9.2 51 91-141 421-471 (518)
256 PF06698 DUF1192: Protein of u 54.2 53 0.0012 22.7 5.5 25 92-116 23-47 (59)
257 PF04375 HemX: HemX; InterPro 54.1 1.2E+02 0.0025 27.4 9.2 8 127-134 125-132 (372)
258 COG2433 Uncharacterized conser 54.0 1E+02 0.0022 30.6 9.2 31 92-122 431-461 (652)
259 PF08606 Prp19: Prp19/Pso4-lik 53.4 40 0.00087 24.2 4.9 25 94-118 12-36 (70)
260 PF14645 Chibby: Chibby family 53.4 73 0.0016 24.5 6.8 33 98-130 79-111 (116)
261 PF07926 TPR_MLP1_2: TPR/MLP1/ 53.3 1E+02 0.0022 23.6 10.3 21 127-147 100-120 (132)
262 PF07407 Seadorna_VP6: Seadorn 53.1 19 0.0004 33.3 3.9 24 93-116 35-58 (420)
263 PRK14127 cell division protein 52.6 47 0.001 25.5 5.5 25 121-145 47-71 (109)
264 PF10205 KLRAQ: Predicted coil 52.6 1E+02 0.0023 23.6 9.2 31 112-142 41-71 (102)
265 PF06428 Sec2p: GDP/GTP exchan 52.6 48 0.001 25.0 5.5 32 116-147 42-73 (100)
266 KOG3433 Protein involved in me 52.3 1.4E+02 0.003 25.5 8.7 75 68-142 94-168 (203)
267 PF09755 DUF2046: Uncharacteri 52.0 56 0.0012 29.6 6.7 55 92-146 180-250 (310)
268 TIGR00606 rad50 rad50. This fa 52.0 1.8E+02 0.0039 30.5 11.2 59 88-146 1026-1089(1311)
269 PTZ00454 26S protease regulato 51.9 78 0.0017 28.9 7.8 19 127-145 45-63 (398)
270 PF15290 Syntaphilin: Golgi-lo 51.7 1.4E+02 0.0029 27.1 8.9 58 78-145 78-137 (305)
271 PF02403 Seryl_tRNA_N: Seryl-t 51.6 91 0.002 22.6 9.2 23 121-143 70-92 (108)
272 KOG0977 Nuclear envelope prote 51.4 89 0.0019 30.3 8.3 34 112-145 156-189 (546)
273 COG2900 SlyX Uncharacterized p 51.1 92 0.002 22.5 8.3 51 90-147 8-58 (72)
274 KOG1318 Helix loop helix trans 50.9 1.9E+02 0.0041 27.2 10.1 32 88-119 288-319 (411)
275 PF13805 Pil1: Eisosome compon 50.4 91 0.002 27.6 7.7 66 67-137 125-191 (271)
276 KOG4807 F-actin binding protei 49.8 1.1E+02 0.0025 29.1 8.5 56 86-141 389-458 (593)
277 PF15058 Speriolin_N: Sperioli 49.7 20 0.00044 30.5 3.4 26 113-138 7-32 (200)
278 KOG0483 Transcription factor H 49.1 61 0.0013 27.3 6.1 46 102-147 103-148 (198)
279 PF03961 DUF342: Protein of un 49.0 1.4E+02 0.003 27.3 9.0 56 89-144 347-408 (451)
280 PRK14872 rod shape-determining 49.0 28 0.00061 31.6 4.4 32 100-131 60-94 (337)
281 KOG0980 Actin-binding protein 48.8 2.7E+02 0.0059 28.9 11.5 7 77-83 417-423 (980)
282 PF08826 DMPK_coil: DMPK coile 48.7 89 0.0019 21.7 7.3 32 91-122 26-57 (61)
283 PRK09973 putative outer membra 48.6 90 0.002 23.2 6.3 30 91-120 25-54 (85)
284 PF08537 NBP1: Fungal Nap bind 48.4 1E+02 0.0022 28.1 7.8 22 68-89 121-142 (323)
285 PTZ00454 26S protease regulato 48.2 82 0.0018 28.7 7.3 37 95-138 27-63 (398)
286 PF04999 FtsL: Cell division p 48.1 64 0.0014 23.1 5.4 27 91-117 43-69 (97)
287 PF06632 XRCC4: DNA double-str 48.0 94 0.002 28.2 7.6 14 132-145 194-207 (342)
288 PRK03992 proteasome-activating 47.8 92 0.002 28.0 7.5 23 123-145 27-49 (389)
289 COG3167 PilO Tfp pilus assembl 47.8 76 0.0016 27.2 6.5 49 98-150 50-98 (211)
290 PF07047 OPA3: Optic atrophy 3 47.7 55 0.0012 25.5 5.4 39 65-109 93-131 (134)
291 TIGR00219 mreC rod shape-deter 47.7 1E+02 0.0022 26.9 7.5 37 107-143 69-109 (283)
292 PF12808 Mto2_bdg: Micro-tubul 47.6 38 0.00083 22.9 3.9 26 92-117 24-49 (52)
293 PF07558 Shugoshin_N: Shugoshi 47.4 26 0.00055 22.8 2.9 42 71-113 3-44 (46)
294 KOG1318 Helix loop helix trans 47.3 1.8E+02 0.004 27.3 9.5 26 120-145 299-324 (411)
295 COG4372 Uncharacterized protei 47.2 2.6E+02 0.0057 26.6 10.5 8 112-119 152-159 (499)
296 PRK10636 putative ABC transpor 47.1 1.7E+02 0.0037 28.1 9.6 57 89-145 562-625 (638)
297 PRK11546 zraP zinc resistance 47.1 1.3E+02 0.0029 24.1 7.6 69 64-141 44-112 (143)
298 KOG0804 Cytoplasmic Zn-finger 47.1 1.3E+02 0.0028 28.9 8.5 40 106-145 384-423 (493)
299 COG1196 Smc Chromosome segrega 47.0 3.5E+02 0.0076 28.1 14.5 8 40-47 647-654 (1163)
300 PF13870 DUF4201: Domain of un 47.0 1.4E+02 0.0031 23.6 8.9 59 92-150 79-137 (177)
301 PRK11147 ABC transporter ATPas 46.9 1.2E+02 0.0026 28.9 8.5 56 90-145 568-629 (635)
302 PF06818 Fez1: Fez1; InterPro 46.9 94 0.002 26.4 7.0 23 93-115 83-105 (202)
303 PRK03992 proteasome-activating 46.2 81 0.0017 28.4 6.9 37 94-130 12-48 (389)
304 KOG2129 Uncharacterized conser 46.2 35 0.00076 32.5 4.6 48 93-140 46-93 (552)
305 KOG4807 F-actin binding protei 46.1 1.8E+02 0.0039 27.8 9.2 50 93-142 431-480 (593)
306 PF12329 TMF_DNA_bd: TATA elem 46.1 1E+02 0.0023 21.7 8.7 48 96-143 11-58 (74)
307 PF10359 Fmp27_WPPW: RNA pol I 46.0 1.3E+02 0.0028 28.1 8.4 60 90-149 170-231 (475)
308 PF10146 zf-C4H2: Zinc finger- 45.9 1.9E+02 0.0042 24.7 9.7 70 88-157 30-114 (230)
309 PF15619 Lebercilin: Ciliary p 45.8 1.8E+02 0.0038 24.2 10.0 32 80-111 8-40 (194)
310 PF07851 TMPIT: TMPIT-like pro 45.7 2E+02 0.0044 26.2 9.3 23 128-150 71-93 (330)
311 cd07666 BAR_SNX7 The Bin/Amphi 45.7 1.6E+02 0.0035 25.5 8.4 51 85-138 158-208 (243)
312 PF14257 DUF4349: Domain of un 45.5 1.2E+02 0.0026 25.5 7.5 30 123-152 167-196 (262)
313 PF10226 DUF2216: Uncharacteri 45.5 1.5E+02 0.0032 25.2 7.9 55 79-133 20-77 (195)
314 COG4238 Murein lipoprotein [Ce 45.4 1.2E+02 0.0026 22.3 7.8 49 90-138 25-73 (78)
315 PF05600 DUF773: Protein of un 45.4 1.2E+02 0.0027 28.7 8.3 44 91-134 447-490 (507)
316 KOG0161 Myosin class II heavy 45.4 1.2E+02 0.0026 33.8 8.9 60 77-136 1647-1706(1930)
317 PF07058 Myosin_HC-like: Myosi 45.2 76 0.0016 29.1 6.4 47 99-145 2-48 (351)
318 PF15619 Lebercilin: Ciliary p 44.4 1.8E+02 0.004 24.1 8.7 28 117-144 163-190 (194)
319 PF11382 DUF3186: Protein of u 44.4 49 0.0011 29.1 5.1 29 90-118 32-60 (308)
320 PF06810 Phage_GP20: Phage min 44.3 1.6E+02 0.0035 23.5 7.7 36 85-120 29-67 (155)
321 PF04568 IATP: Mitochondrial A 43.9 1.4E+02 0.0031 22.6 7.4 43 76-118 55-97 (100)
322 COG3879 Uncharacterized protei 43.9 1.5E+02 0.0032 26.0 7.9 52 92-146 59-110 (247)
323 KOG2129 Uncharacterized conser 43.8 1.5E+02 0.0032 28.5 8.3 40 90-129 278-317 (552)
324 PF02344 Myc-LZ: Myc leucine z 43.7 56 0.0012 20.2 3.8 24 95-118 6-29 (32)
325 PF08961 DUF1875: Domain of un 43.6 7.7 0.00017 33.7 0.0 32 92-130 131-162 (243)
326 COG1792 MreC Cell shape-determ 43.5 84 0.0018 27.5 6.4 24 91-114 84-107 (284)
327 PF12711 Kinesin-relat_1: Kine 43.4 1E+02 0.0022 22.9 5.9 41 98-140 45-85 (86)
328 KOG0243 Kinesin-like protein [ 43.4 2.2E+02 0.0047 29.9 10.0 51 92-142 443-493 (1041)
329 PF10883 DUF2681: Protein of u 43.4 1E+02 0.0023 22.8 6.0 34 112-145 24-57 (87)
330 COG3159 Uncharacterized protei 43.3 1.1E+02 0.0024 26.4 6.9 13 105-117 70-82 (218)
331 PF05557 MAD: Mitotic checkpoi 43.2 1.3E+02 0.0029 29.3 8.3 19 119-137 567-585 (722)
332 PF07047 OPA3: Optic atrophy 3 43.1 67 0.0015 25.0 5.2 36 82-117 97-132 (134)
333 PRK14160 heat shock protein Gr 43.0 2E+02 0.0044 24.5 8.4 42 92-133 56-97 (211)
334 KOG0239 Kinesin (KAR3 subfamil 43.0 2.7E+02 0.0059 27.6 10.4 10 136-145 304-313 (670)
335 PF10211 Ax_dynein_light: Axon 42.8 1.9E+02 0.0041 23.8 10.5 56 87-142 124-180 (189)
336 PRK10722 hypothetical protein; 42.7 98 0.0021 27.2 6.6 25 119-143 177-201 (247)
337 PF08232 Striatin: Striatin fa 42.6 1.1E+02 0.0024 23.9 6.4 37 94-130 29-65 (134)
338 COG4372 Uncharacterized protei 42.5 3.1E+02 0.0067 26.2 10.7 46 86-131 133-178 (499)
339 KOG3433 Protein involved in me 42.5 2.2E+02 0.0047 24.4 10.1 11 94-104 85-95 (203)
340 KOG4403 Cell surface glycoprot 42.3 87 0.0019 30.1 6.6 72 70-145 243-322 (575)
341 COG1730 GIM5 Predicted prefold 42.3 1.6E+02 0.0035 23.6 7.4 8 121-128 125-132 (145)
342 KOG0612 Rho-associated, coiled 42.3 4.7E+02 0.01 28.2 12.3 18 98-115 509-526 (1317)
343 KOG4673 Transcription factor T 42.1 2.7E+02 0.0059 28.5 10.1 40 91-130 719-758 (961)
344 PF08912 Rho_Binding: Rho Bind 41.9 1.3E+02 0.0028 21.6 6.6 33 95-127 1-33 (69)
345 PF14645 Chibby: Chibby family 41.9 84 0.0018 24.2 5.5 19 124-142 84-102 (116)
346 PF05384 DegS: Sensor protein 41.9 1.7E+02 0.0037 23.8 7.6 49 74-122 18-66 (159)
347 KOG4360 Uncharacterized coiled 41.8 1.7E+02 0.0038 28.6 8.6 22 120-141 270-291 (596)
348 PF11180 DUF2968: Protein of u 41.5 2.2E+02 0.0048 24.1 9.6 32 94-125 151-182 (192)
349 smart00340 HALZ homeobox assoc 41.5 72 0.0016 21.1 4.3 26 92-117 7-32 (44)
350 PF07439 DUF1515: Protein of u 41.3 1.7E+02 0.0037 22.8 8.7 66 57-122 6-72 (112)
351 PF10473 CENP-F_leu_zip: Leuci 41.3 1.8E+02 0.004 23.2 12.3 36 97-132 73-108 (140)
352 PF04859 DUF641: Plant protein 41.2 1.1E+02 0.0023 24.4 6.1 15 116-130 113-127 (131)
353 PF11853 DUF3373: Protein of u 40.6 25 0.00053 33.6 2.8 25 91-115 32-56 (489)
354 PRK14872 rod shape-determining 40.6 99 0.0022 28.1 6.5 25 119-143 58-82 (337)
355 PRK15396 murein lipoprotein; P 40.6 1.4E+02 0.0031 21.7 7.6 30 91-120 26-55 (78)
356 PRK11546 zraP zinc resistance 40.5 1.9E+02 0.0042 23.2 7.8 30 86-115 71-107 (143)
357 TIGR02231 conserved hypothetic 40.3 3.1E+02 0.0067 25.5 11.8 47 100-146 127-173 (525)
358 PF09486 HrpB7: Bacterial type 40.1 2E+02 0.0044 23.4 8.7 50 90-139 79-128 (158)
359 PF13118 DUF3972: Protein of u 40.1 1.5E+02 0.0034 23.4 6.8 43 90-132 78-120 (126)
360 KOG0999 Microtubule-associated 39.9 1.4E+02 0.0031 29.6 7.8 51 95-145 6-56 (772)
361 PF13874 Nup54: Nucleoporin co 39.8 1.4E+02 0.0031 23.2 6.6 54 96-149 71-124 (141)
362 PRK05892 nucleoside diphosphat 39.4 2E+02 0.0043 23.0 8.1 58 90-147 11-76 (158)
363 KOG0483 Transcription factor H 38.7 64 0.0014 27.2 4.8 45 99-143 107-151 (198)
364 PF08606 Prp19: Prp19/Pso4-lik 38.4 1.5E+02 0.0032 21.3 8.5 25 95-119 20-44 (70)
365 PRK09973 putative outer membra 38.3 1.7E+02 0.0036 21.8 7.3 45 98-142 25-69 (85)
366 TIGR01000 bacteriocin_acc bact 38.2 3.1E+02 0.0068 25.0 9.7 30 122-151 295-324 (457)
367 PRK10929 putative mechanosensi 37.8 5.2E+02 0.011 27.4 13.1 49 99-147 260-308 (1109)
368 COG2919 Septum formation initi 37.6 86 0.0019 23.8 4.9 16 69-84 21-36 (117)
369 PF08961 DUF1875: Domain of un 37.6 11 0.00024 32.8 0.0 42 89-137 121-162 (243)
370 KOG0978 E3 ubiquitin ligase in 37.5 4.3E+02 0.0093 26.6 10.8 56 95-150 571-626 (698)
371 PF06305 DUF1049: Protein of u 37.4 35 0.00076 22.7 2.5 15 88-102 53-67 (68)
372 TIGR03185 DNA_S_dndD DNA sulfu 37.4 2E+02 0.0043 27.7 8.4 10 92-101 211-220 (650)
373 PRK11281 hypothetical protein; 37.2 4.8E+02 0.01 27.6 11.5 47 68-114 159-216 (1113)
374 KOG0249 LAR-interacting protei 37.1 4.8E+02 0.01 26.8 12.8 75 65-139 160-258 (916)
375 PF13942 Lipoprotein_20: YfhG 37.0 1.7E+02 0.0038 24.5 6.9 28 118-145 130-157 (179)
376 KOG3564 GTPase-activating prot 37.0 3.4E+02 0.0074 26.6 9.7 60 85-144 44-103 (604)
377 PF14077 WD40_alt: Alternative 36.8 41 0.00089 22.6 2.6 21 90-110 18-38 (48)
378 KOG4797 Transcriptional regula 36.7 86 0.0019 24.7 4.8 26 91-116 68-93 (123)
379 PF13851 GAS: Growth-arrest sp 36.7 2.5E+02 0.0053 23.3 12.7 58 66-123 69-126 (201)
380 PF05837 CENP-H: Centromere pr 36.5 1.8E+02 0.0039 21.7 7.4 28 122-149 62-89 (106)
381 PF09728 Taxilin: Myosin-like 36.4 2.7E+02 0.0058 24.7 8.5 50 88-137 48-97 (309)
382 PF04871 Uso1_p115_C: Uso1 / p 36.3 2.1E+02 0.0045 22.4 8.6 19 92-110 57-75 (136)
383 PF05622 HOOK: HOOK protein; 36.2 12 0.00026 36.4 0.0 34 87-120 322-355 (713)
384 PF02388 FemAB: FemAB family; 36.0 2.5E+02 0.0054 25.5 8.4 26 90-115 242-267 (406)
385 PF06937 EURL: EURL protein; 35.9 1.8E+02 0.0039 26.1 7.2 48 98-145 220-267 (285)
386 PF05701 WEMBL: Weak chloropla 35.9 3.8E+02 0.0083 25.3 10.4 57 89-145 301-357 (522)
387 COG5185 HEC1 Protein involved 35.8 2.3E+02 0.005 27.7 8.4 62 89-150 486-551 (622)
388 PF06305 DUF1049: Protein of u 35.8 57 0.0012 21.6 3.3 14 93-106 51-64 (68)
389 KOG1319 bHLHZip transcription 35.7 2.9E+02 0.0063 23.8 8.4 34 70-103 59-92 (229)
390 PF07200 Mod_r: Modifier of ru 35.6 2E+02 0.0044 22.0 8.7 72 70-143 36-107 (150)
391 cd07588 BAR_Amphiphysin The Bi 35.5 1.4E+02 0.003 25.1 6.3 56 84-139 112-171 (211)
392 PF13874 Nup54: Nucleoporin co 35.5 1.5E+02 0.0034 22.9 6.2 43 101-143 83-125 (141)
393 PF14712 Snapin_Pallidin: Snap 35.4 1.6E+02 0.0034 20.7 8.3 33 92-124 16-48 (92)
394 PF06008 Laminin_I: Laminin Do 35.4 2.7E+02 0.0059 23.5 8.9 60 89-148 79-143 (264)
395 PF15070 GOLGA2L5: Putative go 35.4 2.6E+02 0.0057 27.4 8.9 54 92-145 96-149 (617)
396 cd07598 BAR_FAM92 The Bin/Amph 35.3 2.2E+02 0.0048 23.9 7.5 56 90-145 18-74 (211)
397 KOG2077 JNK/SAPK-associated pr 35.3 1.5E+02 0.0033 29.6 7.2 51 90-140 329-379 (832)
398 PF07334 IFP_35_N: Interferon- 35.3 85 0.0018 22.9 4.3 18 99-116 2-19 (76)
399 PF13870 DUF4201: Domain of un 35.0 2.3E+02 0.005 22.5 9.0 50 94-143 88-137 (177)
400 COG3937 Uncharacterized conser 35.0 2.2E+02 0.0047 22.2 6.9 21 126-146 84-104 (108)
401 KOG0946 ER-Golgi vesicle-tethe 34.8 5.3E+02 0.011 26.9 10.9 6 94-99 689-694 (970)
402 PF09766 FimP: Fms-interacting 34.7 2.4E+02 0.0053 25.3 8.1 37 87-123 105-141 (355)
403 KOG4426 Arginyl-tRNA synthetas 34.6 1.3E+02 0.0029 29.2 6.6 74 93-166 32-117 (656)
404 TIGR01010 BexC_CtrB_KpsE polys 34.5 3.2E+02 0.0069 23.9 8.8 21 125-145 214-234 (362)
405 KOG2689 Predicted ubiquitin re 34.4 3.5E+02 0.0075 24.4 11.1 45 97-141 117-162 (290)
406 PLN03188 kinesin-12 family pro 34.3 1.5E+02 0.0033 31.8 7.4 43 99-141 1175-1241(1320)
407 PF06548 Kinesin-related: Kine 34.2 1.6E+02 0.0035 28.2 7.0 52 90-141 385-471 (488)
408 KOG0818 GTPase-activating prot 33.8 78 0.0017 31.0 4.9 55 89-150 422-476 (669)
409 TIGR03545 conserved hypothetic 33.7 2.6E+02 0.0056 27.0 8.5 72 75-146 176-258 (555)
410 PRK03947 prefoldin subunit alp 33.6 1.7E+02 0.0038 22.2 6.1 28 94-121 105-132 (140)
411 KOG1103 Predicted coiled-coil 33.2 4.1E+02 0.009 25.2 9.4 66 65-133 110-175 (561)
412 PF06210 DUF1003: Protein of u 33.2 2.2E+02 0.0047 21.7 7.8 23 104-126 80-102 (108)
413 PF11544 Spc42p: Spindle pole 33.1 1.9E+02 0.0042 21.1 9.1 52 94-146 9-60 (76)
414 PF00261 Tropomyosin: Tropomyo 32.9 2.9E+02 0.0064 23.1 9.9 59 86-144 130-188 (237)
415 TIGR02680 conserved hypothetic 32.9 4.8E+02 0.01 27.8 10.9 67 79-145 871-941 (1353)
416 PF12777 MT: Microtubule-bindi 32.9 3.5E+02 0.0076 23.9 9.2 52 91-142 229-280 (344)
417 KOG0976 Rho/Rac1-interacting s 32.7 6.1E+02 0.013 26.7 12.3 54 91-144 352-405 (1265)
418 PF07544 Med9: RNA polymerase 32.6 1.9E+02 0.004 20.7 6.3 12 126-137 67-78 (83)
419 PF13094 CENP-Q: CENP-Q, a CEN 32.6 2.3E+02 0.005 22.1 6.8 49 89-137 40-88 (160)
420 PF14282 FlxA: FlxA-like prote 32.5 2.1E+02 0.0046 21.3 7.4 12 93-104 29-40 (106)
421 PF12737 Mating_C: C-terminal 32.5 51 0.0011 30.8 3.5 22 85-106 397-418 (419)
422 cd07611 BAR_Amphiphysin_I_II T 32.5 2.7E+02 0.0058 23.7 7.6 55 84-138 112-170 (211)
423 COG2919 Septum formation initi 32.3 1.7E+02 0.0036 22.2 5.8 30 110-139 56-85 (117)
424 PRK11448 hsdR type I restricti 32.2 2.2E+02 0.0047 29.8 8.2 33 88-120 175-207 (1123)
425 PRK09413 IS2 repressor TnpA; R 32.1 1.2E+02 0.0026 22.7 4.9 15 123-137 90-104 (121)
426 PF10168 Nup88: Nuclear pore c 32.1 4E+02 0.0086 26.6 9.7 27 91-117 580-606 (717)
427 COG4717 Uncharacterized conser 31.8 4.9E+02 0.011 27.2 10.2 73 78-150 729-813 (984)
428 PF00769 ERM: Ezrin/radixin/mo 31.8 3.3E+02 0.0071 23.3 10.9 19 94-112 51-69 (246)
429 PRK15396 murein lipoprotein; P 31.8 2E+02 0.0044 20.8 7.9 26 91-116 33-58 (78)
430 PRK11281 hypothetical protein; 31.7 6E+02 0.013 26.9 11.2 48 99-146 280-327 (1113)
431 KOG0978 E3 ubiquitin ligase in 31.6 3.9E+02 0.0084 26.9 9.4 60 81-140 564-623 (698)
432 COG1382 GimC Prefoldin, chaper 31.6 2.2E+02 0.0048 22.3 6.4 26 120-145 86-111 (119)
433 PRK04778 septation ring format 31.1 4.7E+02 0.01 24.9 11.2 57 90-146 376-432 (569)
434 KOG4603 TBP-1 interacting prot 31.0 3.3E+02 0.0072 23.1 8.7 27 121-147 119-145 (201)
435 TIGR01461 greB transcription e 31.0 2.1E+02 0.0045 22.8 6.4 56 92-147 10-74 (156)
436 PF10805 DUF2730: Protein of u 31.0 2.3E+02 0.0049 21.2 9.2 55 89-143 34-90 (106)
437 PF09727 CortBP2: Cortactin-bi 30.8 3.3E+02 0.0071 23.0 10.9 72 66-140 106-177 (192)
438 PF11500 Cut12: Spindle pole b 30.6 3E+02 0.0065 22.4 8.8 53 66-118 81-133 (152)
439 PF13805 Pil1: Eisosome compon 30.6 1.7E+02 0.0036 26.0 6.2 52 68-119 143-194 (271)
440 KOG0996 Structural maintenance 30.5 5.5E+02 0.012 27.7 10.6 51 86-143 538-588 (1293)
441 PF05600 DUF773: Protein of un 30.5 3.9E+02 0.0085 25.4 9.1 57 89-145 431-487 (507)
442 PF10481 CENP-F_N: Cenp-F N-te 30.5 4.1E+02 0.009 24.0 10.5 31 87-117 50-80 (307)
443 KOG2751 Beclin-like protein [S 30.3 4.6E+02 0.0099 25.0 9.2 62 79-140 153-219 (447)
444 PRK10361 DNA recombination pro 30.3 4.9E+02 0.011 24.9 10.6 65 80-145 23-87 (475)
445 TIGR01554 major_cap_HK97 phage 30.2 3.9E+02 0.0084 23.6 9.6 25 91-115 35-59 (378)
446 PHA02562 46 endonuclease subun 30.1 4.4E+02 0.0094 24.2 12.9 63 81-143 328-390 (562)
447 PF10498 IFT57: Intra-flagella 29.9 4.3E+02 0.0094 24.1 12.0 51 95-145 264-314 (359)
448 cd07591 BAR_Rvs161p The Bin/Am 29.9 3E+02 0.0064 23.1 7.4 57 83-139 116-176 (224)
449 cd07599 BAR_Rvs167p The Bin/Am 29.7 3.1E+02 0.0067 22.3 8.7 61 82-142 116-184 (216)
450 PF07889 DUF1664: Protein of u 29.6 2.8E+02 0.0061 21.8 8.1 52 94-145 51-102 (126)
451 PF06160 EzrA: Septation ring 29.5 5E+02 0.011 24.7 10.7 83 72-154 354-439 (560)
452 COG1340 Uncharacterized archae 29.2 4.3E+02 0.0093 23.8 10.4 65 81-145 149-213 (294)
453 PF04871 Uso1_p115_C: Uso1 / p 29.1 2.8E+02 0.0061 21.7 10.5 49 87-135 59-108 (136)
454 PF04375 HemX: HemX; InterPro 29.0 4.3E+02 0.0093 23.8 9.1 57 91-147 61-122 (372)
455 PF02646 RmuC: RmuC family; I 29.0 3.6E+02 0.0079 23.5 8.1 29 89-117 30-61 (304)
456 cd07612 BAR_Bin2 The Bin/Amphi 28.9 3.6E+02 0.0078 22.9 7.8 54 85-138 113-170 (211)
457 PF09763 Sec3_C: Exocyst compl 28.7 2.5E+02 0.0054 27.2 7.6 55 90-144 37-91 (701)
458 TIGR01000 bacteriocin_acc bact 28.6 4.6E+02 0.0099 23.9 11.2 36 123-158 289-325 (457)
459 PF06216 RTBV_P46: Rice tungro 28.2 1.8E+02 0.004 26.3 6.0 41 85-125 73-113 (389)
460 PF13942 Lipoprotein_20: YfhG 28.2 2.8E+02 0.0061 23.3 6.8 38 88-125 121-158 (179)
461 PLN02678 seryl-tRNA synthetase 28.1 3.9E+02 0.0084 25.1 8.5 56 90-145 40-98 (448)
462 PHA00728 hypothetical protein 28.1 77 0.0017 25.5 3.3 21 97-117 5-25 (151)
463 KOG0964 Structural maintenance 27.9 5.7E+02 0.012 27.2 10.1 70 74-143 416-492 (1200)
464 TIGR02977 phageshock_pspA phag 27.6 3.5E+02 0.0077 22.3 11.1 50 90-139 99-148 (219)
465 KOG0249 LAR-interacting protei 27.5 3.6E+02 0.0077 27.7 8.4 25 120-144 232-256 (916)
466 PF05812 Herpes_BLRF2: Herpesv 27.5 1.1E+02 0.0023 24.1 4.0 22 114-135 6-27 (118)
467 KOG0971 Microtubule-associated 27.4 4.7E+02 0.01 27.7 9.3 32 88-119 408-439 (1243)
468 PF06424 PRP1_N: PRP1 splicing 27.3 84 0.0018 25.0 3.4 28 95-122 88-115 (133)
469 KOG0244 Kinesin-like protein [ 27.2 1.8E+02 0.0039 30.1 6.4 58 73-132 315-377 (913)
470 KOG3647 Predicted coiled-coil 27.1 4.8E+02 0.01 23.7 9.6 72 75-146 83-161 (338)
471 PF12795 MscS_porin: Mechanose 27.1 3.7E+02 0.008 22.4 8.1 55 92-146 80-134 (240)
472 PF01920 Prefoldin_2: Prefoldi 27.0 2.3E+02 0.0049 19.9 5.7 14 128-141 86-99 (106)
473 PF14775 NYD-SP28_assoc: Sperm 27.0 2.1E+02 0.0045 19.5 7.5 32 100-132 23-54 (60)
474 PF09006 Surfac_D-trimer: Lung 27.0 1.6E+02 0.0034 19.7 4.1 21 93-113 2-22 (46)
475 COG5509 Uncharacterized small 26.8 2E+02 0.0042 20.4 4.8 23 92-114 27-49 (65)
476 COG5570 Uncharacterized small 26.6 1.3E+02 0.0027 20.9 3.7 50 91-140 6-55 (57)
477 PF14916 CCDC92: Coiled-coil d 26.6 2.3E+02 0.0049 19.7 5.6 58 102-162 1-59 (60)
478 PF07889 DUF1664: Protein of u 26.6 3.2E+02 0.0069 21.5 10.5 67 79-145 57-123 (126)
479 PF07111 HCR: Alpha helical co 26.5 6.9E+02 0.015 25.4 11.9 76 70-145 481-569 (739)
480 COG3352 FlaC Putative archaeal 26.5 3.7E+02 0.008 22.2 8.6 59 89-147 78-137 (157)
481 KOG4674 Uncharacterized conser 26.2 6E+02 0.013 28.5 10.3 72 74-145 92-163 (1822)
482 cd07667 BAR_SNX30 The Bin/Amph 26.2 4.3E+02 0.0094 22.9 8.8 54 83-139 153-206 (240)
483 PF09766 FimP: Fms-interacting 26.0 4.8E+02 0.01 23.5 8.4 52 93-144 90-141 (355)
484 cd07590 BAR_Bin3 The Bin/Amphi 26.0 3.1E+02 0.0067 23.3 6.9 58 80-137 112-175 (225)
485 COG3264 Small-conductance mech 26.0 2.8E+02 0.006 28.5 7.4 57 89-145 71-127 (835)
486 PRK05431 seryl-tRNA synthetase 25.9 5.2E+02 0.011 23.7 11.2 74 72-145 5-93 (425)
487 KOG4673 Transcription factor T 25.9 4.9E+02 0.011 26.8 9.0 80 87-169 736-816 (961)
488 PF04420 CHD5: CHD5-like prote 25.7 3.1E+02 0.0068 21.8 6.6 58 87-144 37-99 (161)
489 PF04949 Transcrip_act: Transc 25.7 3.8E+02 0.0083 22.1 13.2 106 40-145 9-125 (159)
490 COG1340 Uncharacterized archae 25.6 5E+02 0.011 23.4 10.3 64 82-145 19-82 (294)
491 cd07596 BAR_SNX The Bin/Amphip 25.5 3.2E+02 0.007 21.2 11.4 72 69-143 110-188 (218)
492 PRK11530 hypothetical protein; 25.5 1.7E+02 0.0036 24.7 5.0 32 97-128 24-55 (183)
493 PHA02109 hypothetical protein 25.4 2.4E+02 0.0052 24.2 6.0 39 88-126 191-229 (233)
494 TIGR01242 26Sp45 26S proteasom 25.3 2E+02 0.0042 25.3 5.8 40 92-131 1-40 (364)
495 KOG0018 Structural maintenance 25.2 8.6E+02 0.019 26.0 11.1 79 67-145 400-478 (1141)
496 TIGR01242 26Sp45 26S proteasom 25.1 2.3E+02 0.0049 24.9 6.1 39 107-145 2-40 (364)
497 KOG1691 emp24/gp25L/p24 family 25.0 2.7E+02 0.0058 24.0 6.3 50 88-137 132-181 (210)
498 PF13600 DUF4140: N-terminal d 24.9 2.4E+02 0.0052 20.2 5.3 34 90-123 70-103 (104)
499 PF09744 Jnk-SapK_ap_N: JNK_SA 24.8 3.8E+02 0.0082 21.7 9.3 73 73-145 61-137 (158)
500 PRK14143 heat shock protein Gr 24.7 4.1E+02 0.0089 22.9 7.4 50 94-143 64-113 (238)
No 1
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=99.52 E-value=2e-13 Score=117.11 Aligned_cols=90 Identities=27% Similarity=0.391 Sum_probs=85.8
Q ss_pred HHHhhhccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 042014 58 EQQQQSMIINERKQRRMISNRESARRSRMRKQKHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATEL 137 (169)
Q Consensus 58 eq~~~~~~~deRR~RR~isNRESARRSR~RKq~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~L 137 (169)
-+.+.+++.|||-+|||++||.+|+.+|.|||+++++++.+|.+|..||+.|+.+...|.++.+.|..+|..|+.++..+
T Consensus 58 r~RL~HLS~EEK~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~ 137 (292)
T KOG4005|consen 58 RRRLDHLSWEEKVQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELL 137 (292)
T ss_pred HHhhcccCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 35688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhc
Q 042014 138 RQMLTDLQLN 147 (169)
Q Consensus 138 r~~L~~l~~~ 147 (169)
++.|.+++.+
T Consensus 138 ~~~l~~~~~~ 147 (292)
T KOG4005|consen 138 RQELAELKQQ 147 (292)
T ss_pred HHHHHhhHHH
Confidence 9999887754
No 2
>smart00338 BRLZ basic region leucin zipper.
Probab=99.46 E-value=5.4e-13 Score=91.70 Aligned_cols=61 Identities=36% Similarity=0.492 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 042014 66 INERKQRRMISNRESARRSRMRKQKHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQE 126 (169)
Q Consensus 66 ~deRR~RR~isNRESARRSR~RKq~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~E 126 (169)
.|+|+.||+++||+||++||.||+.|+.+|+.+|..|..+|..|..++..|...+..+..+
T Consensus 2 ~~~k~~rR~~rNR~aA~~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~ 62 (65)
T smart00338 2 EDEKRRRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSE 62 (65)
T ss_pred ccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999999999999999999988766555444443
No 3
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=99.41 E-value=2.1e-12 Score=88.67 Aligned_cols=62 Identities=35% Similarity=0.489 Sum_probs=56.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 042014 67 NERKQRRMISNRESARRSRMRKQKHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENA 128 (169)
Q Consensus 67 deRR~RR~isNRESARRSR~RKq~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~ 128 (169)
+.++.+|+++||+||++||.||+.++++|+.+|..|..+|..|..++..|...+..|..+|.
T Consensus 3 ~~k~~~rr~rNR~AAr~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~~ 64 (64)
T PF00170_consen 3 EDKRERRRERNREAARRSRQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSENH 64 (64)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 45789999999999999999999999999999999999999999999998888888877763
No 4
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=99.28 E-value=5.7e-12 Score=117.52 Aligned_cols=66 Identities=36% Similarity=0.424 Sum_probs=62.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 042014 68 ERKQRRMISNRESARRSRMRKQKHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVE 133 (169)
Q Consensus 68 eRR~RR~isNRESARRSR~RKq~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e 133 (169)
-||+.|||+|||||..||+|||+|+..||.++..|.+||+.|+.+...|.+++..++.||..||--
T Consensus 280 ~krqQRmIKNResA~~SRkKKKEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~En~~~kvp 345 (655)
T KOG4343|consen 280 LKRQQRMIKNRESACQSRKKKKEYMLGLEARLQALLSENEQLKKENATLKRQLDELVSENQRLKVP 345 (655)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcCcccccC
Confidence 458889999999999999999999999999999999999999999999999999999999999753
No 5
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=99.18 E-value=1.7e-10 Score=77.11 Aligned_cols=51 Identities=41% Similarity=0.561 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 66 INERKQRRMISNRESARRSRMRKQKHLDELWSQVVWLRNENHQLVDKLNHVS 117 (169)
Q Consensus 66 ~deRR~RR~isNRESARRSR~RKq~~leeLe~qV~~L~~eN~~L~~~l~~l~ 117 (169)
.++++.||+ +||+||++||.||+.++.+|+.+|..|..+|..|..++..|.
T Consensus 2 ~~~~~~rR~-rNr~AA~r~R~rkk~~~~~le~~~~~L~~en~~L~~~i~~L~ 52 (54)
T PF07716_consen 2 DEEKRERRE-RNREAARRSRQRKKQREEELEQEVQELEEENEQLRQEIAQLE 52 (54)
T ss_dssp CHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 367788888 999999999999999999999999999999999988887664
No 6
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=98.95 E-value=1.2e-09 Score=100.51 Aligned_cols=69 Identities=29% Similarity=0.385 Sum_probs=61.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 67 NERKQRRMISNRESARRSRMRKQKHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLT 142 (169)
Q Consensus 67 deRR~RR~isNRESARRSR~RKq~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~ 142 (169)
.-||.||||+|++||+.||+|||.|++.||.+|....++|.+|.+++.. ++.+|..|-+++..|+..+.
T Consensus 249 iLKrvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV~~-------Le~~N~sLl~qL~klQt~v~ 317 (472)
T KOG0709|consen 249 ILKRVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKVEE-------LELSNRSLLAQLKKLQTLVI 317 (472)
T ss_pred HHHHHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHHH-------HhhccHHHHHHHHHHHHHHh
Confidence 3458999999999999999999999999999999999999999998876 56688888888888877664
No 7
>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]
Probab=98.82 E-value=1.1e-08 Score=90.07 Aligned_cols=51 Identities=29% Similarity=0.516 Sum_probs=47.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042014 68 ERKQRRMISNRESARRSRMRKQKHLDELWSQVVWLRNENHQLVDKLNHVSG 118 (169)
Q Consensus 68 eRR~RR~isNRESARRSR~RKq~~leeLe~qV~~L~~eN~~L~~~l~~l~~ 118 (169)
.||+-|+.+|||+||.+|+|||+|+.=||.+|+.|+.+|..|..+|..|.+
T Consensus 290 rKRevRLmKNREAARECRRKKKEYVKCLENRVAVLENQNKaLIEELKtLKe 340 (348)
T KOG3584|consen 290 RKREVRLMKNREAARECRRKKKEYVKCLENRVAVLENQNKALIEELKTLKE 340 (348)
T ss_pred hHHHHHHHhhHHHHHHHHHhHhHHHHHHHhHHHHHhcccHHHHHHHHHHHH
Confidence 458889999999999999999999999999999999999999999988765
No 8
>PF03131 bZIP_Maf: bZIP Maf transcription factor; InterPro: IPR004826 There are several different types of Maf transcription factors with different roles in the cell. MafG and MafH are small Mafs which lack a putative transactivation domain. They behave as transcriptional repressors when they dimerize among themselves. However they also serve as transcriptional activators by dimerizing with other (usually larger) basic-zipper proteins and recruiting them to specific DNA-binding sites. Maf transcription factors contain a conserved basic region leucine zipper (bZIP) domain, which mediates their dimerization and DNA binding property. Neural retina-specific leucine zipper proteins also belong to this family. Together with the basic region, the Maf extended homology region (EHR), conserved only within the Maf family, defines the DNA binding specific to Mafs. This structure enables Mafs to make a broader area of contact with DNA and to recognise longer DNA sequences. In particular, the two residues at the beginning of helix H2 are positioned to recognise the flanking region []. Small Maf proteins heterodimerize with Fos and may act as competitive repressors of the NF2-E2 transcription factor. In mouse, Maf1 may play an early role in axial patterning. Defects in these proteins are a cause of autosomal dominant retinitis pigmentosa. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2KZ5_A 3A5T_A 1K1V_A 1SKN_P 2WT7_B 2WTY_B.
Probab=98.11 E-value=4.5e-08 Score=71.86 Aligned_cols=53 Identities=30% Similarity=0.415 Sum_probs=43.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 042014 67 NERKQRRMISNRESARRSRMRKQKHLDELWSQVVWLRNENHQLVDKLNHVSGC 119 (169)
Q Consensus 67 deRR~RR~isNRESARRSR~RKq~~leeLe~qV~~L~~eN~~L~~~l~~l~~~ 119 (169)
+-|..||.++||.+|+.||.||..++++|+.++..|+.+...|..++..+...
T Consensus 28 ~lK~~RRr~KNR~~A~~cR~rk~~~~~~Le~e~~~l~~~~~~L~~e~~~l~~e 80 (92)
T PF03131_consen 28 ELKQRRRRLKNRGYAQNCRKRKLDQIEELEEEIEQLRQEIEQLQQELSELRQE 80 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44789999999999999999999999999999998887766666655554443
No 9
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=97.87 E-value=6.8e-05 Score=66.11 Aligned_cols=54 Identities=26% Similarity=0.353 Sum_probs=44.7
Q ss_pred cHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042014 65 IINERKQRR-MISNRESARRSRMRKQKHLDELWSQVVWLRNENHQLVDKLNHVSG 118 (169)
Q Consensus 65 ~~deRR~RR-~isNRESARRSR~RKq~~leeLe~qV~~L~~eN~~L~~~l~~l~~ 118 (169)
..++|+.|| .+.|..+|-|.|.||++..+.|+.+...|+..|.+|+.++..+..
T Consensus 222 ~~~~~~~~rkr~qnk~AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~ler 276 (294)
T KOG4571|consen 222 KTPEKKLRRKRQQNKAAATRYRQKKRAEKEALLGELEGLEKRNEELKDQASELER 276 (294)
T ss_pred CCchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555 566667799999999999999999999999999999998877554
No 10
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=97.81 E-value=7.5e-05 Score=65.17 Aligned_cols=59 Identities=32% Similarity=0.473 Sum_probs=47.9
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 71 QRRMISNRESARRSRMRKQKHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTD 143 (169)
Q Consensus 71 ~RR~isNRESARRSR~RKq~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~ 143 (169)
.|..++||++|.+||.||-+|+..||.+|..|..+|..|...+.. |++.+.++++++..
T Consensus 208 eRkrlrnreaa~Kcr~rkLdrisrLEdkv~~lk~~n~~L~~~l~~--------------l~~~v~e~k~~V~~ 266 (279)
T KOG0837|consen 208 ERKRLRNREAASKCRKRKLDRISRLEDKVKTLKIYNRDLASELSK--------------LKEQVAELKQKVME 266 (279)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHH--------------HHHHHHHHHHHHHH
Confidence 344789999999999999999999999999999999887776654 45556666666543
No 11
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=97.48 E-value=0.0025 Score=50.64 Aligned_cols=64 Identities=23% Similarity=0.352 Sum_probs=48.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042014 68 ERKQRRMISNRESARRSRMRKQKHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTDLQ 145 (169)
Q Consensus 68 eRR~RR~isNRESARRSR~RKq~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l~ 145 (169)
-|.+||-++||--|+-+|-|+-.+-++||.+-..|..+.+. |..||++++.|+..++.++..++
T Consensus 52 lKQrRRTLKNRGYA~sCR~KRv~Qk~eLE~~k~~L~qqv~~--------------L~~e~s~~~~E~da~k~k~e~l~ 115 (135)
T KOG4196|consen 52 LKQRRRTLKNRGYAQSCRVKRVQQKHELEKEKAELQQQVEK--------------LKEENSRLRRELDAYKSKYEALQ 115 (135)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678899999999999999998888888776666554433 44567777777777777776655
No 12
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=97.25 E-value=0.0016 Score=56.41 Aligned_cols=46 Identities=28% Similarity=0.427 Sum_probs=39.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 71 QRRMISNRESARRSRMRKQKHLDELWSQVVWLRNENHQLVDKLNHV 116 (169)
Q Consensus 71 ~RR~isNRESARRSR~RKq~~leeLe~qV~~L~~eN~~L~~~l~~l 116 (169)
..|..+|=++|||||.+.+...++++.+|..|+.||..|+.++..|
T Consensus 196 ~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l 241 (269)
T KOG3119|consen 196 KERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQL 241 (269)
T ss_pred HHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344489999999999999999999999999999998888876543
No 13
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=96.59 E-value=0.017 Score=44.03 Aligned_cols=53 Identities=28% Similarity=0.488 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 042014 94 ELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTDLQL 146 (169)
Q Consensus 94 eLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l~~ 146 (169)
+|-.++..|...-..|..++..|......|..||..|+-|...||.+|..+..
T Consensus 5 ~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 5 ELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34455666666666667777777777778888899999999999998887754
No 14
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=96.51 E-value=0.04 Score=39.36 Aligned_cols=53 Identities=17% Similarity=0.168 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhH-------HHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 91 HLDELWSQVVWLRNENHQLVDKLNHVSGC-------HDKVIQENAELKVEATELRQMLTD 143 (169)
Q Consensus 91 ~leeLe~qV~~L~~eN~~L~~~l~~l~~~-------~~~l~~EN~~Lr~e~~~Lr~~L~~ 143 (169)
-++.|+.+|..+-.....|+.++..|.++ ...|..||..|+.+-.....+|..
T Consensus 5 ~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~ 64 (72)
T PF06005_consen 5 LLEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRS 64 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667776665555555555555555544 666666666666666666666554
No 15
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.48 E-value=0.021 Score=41.43 Aligned_cols=53 Identities=21% Similarity=0.298 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042014 92 LDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTDL 144 (169)
Q Consensus 92 leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l 144 (169)
+.-|.-+|+.|...|..|..+...+......|..||.+|+.+-...+.+|..+
T Consensus 20 I~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsL 72 (79)
T COG3074 20 ITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRAL 72 (79)
T ss_pred HHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567889999999999999999999999999999999999999888888765
No 16
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=96.43 E-value=0.039 Score=38.99 Aligned_cols=54 Identities=20% Similarity=0.145 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042014 92 LDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTDLQ 145 (169)
Q Consensus 92 leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l~ 145 (169)
+..|+.+|.+|=..-.+|+.+...|.++...+..|++.|.+.....|.+|..|=
T Consensus 2 L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI 55 (65)
T TIGR02449 2 LQALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMI 55 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666666666666666666666777788888888888888877764
No 17
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=96.33 E-value=0.029 Score=41.12 Aligned_cols=53 Identities=19% Similarity=0.287 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042014 92 LDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTDL 144 (169)
Q Consensus 92 leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l 144 (169)
+.-|..+|+.|+..|..|..+++.+......|..||..|+.+-.....+|..|
T Consensus 20 I~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~L 72 (79)
T PRK15422 20 ITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQAL 72 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466788899999999999998888888899999999999998888888765
No 18
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=96.16 E-value=0.042 Score=42.34 Aligned_cols=52 Identities=23% Similarity=0.392 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042014 94 ELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTDLQ 145 (169)
Q Consensus 94 eLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l~ 145 (169)
+|=.+|..|...-..|..++..|......+..||..|+.|-..||.+|..+.
T Consensus 5 elfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~~ 56 (110)
T PRK13169 5 EIFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEELE 56 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445556666666666666677777777778888888888888888888763
No 19
>KOG3863 consensus bZIP transcription factor NRF1 [Transcription]
Probab=95.91 E-value=0.02 Score=55.10 Aligned_cols=64 Identities=27% Similarity=0.273 Sum_probs=49.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 042014 70 KQRRMISNRESARRSRMRKQKHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQM 140 (169)
Q Consensus 70 R~RR~isNRESARRSR~RKq~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~ 140 (169)
=.||.=+||.||+++|+||-.-+..||..|..|+.+-.+|.++-.++... =.+++.++..|-+.
T Consensus 491 DIRRRgKNkvAAQnCRKRKLd~I~nLE~ev~~l~~eKeqLl~Er~~~d~~-------L~~~kqqls~L~~~ 554 (604)
T KOG3863|consen 491 DIRRRGKNKVAAQNCRKRKLDCILNLEDEVEKLQKEKEQLLRERDELDST-------LGVMKQQLSELYQE 554 (604)
T ss_pred ccccccccchhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Confidence 35788899999999999999999999999999999999988875544332 23444455555443
No 20
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=95.89 E-value=0.056 Score=41.26 Aligned_cols=50 Identities=28% Similarity=0.296 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 042014 90 KHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQ 139 (169)
Q Consensus 90 ~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~ 139 (169)
..+.+|+.++..|-.+-..|+..+..|.+....|.-||..||..+..+..
T Consensus 8 ~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 8 DRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46889999999999999999999999999999999999999999999876
No 21
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=95.68 E-value=0.074 Score=40.96 Aligned_cols=50 Identities=24% Similarity=0.216 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 042014 90 KHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQ 139 (169)
Q Consensus 90 ~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~ 139 (169)
..+..|+.++..+-.+-..|+..+..+.+....|.-||..||..+.++..
T Consensus 8 d~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~~~ 57 (110)
T PRK13169 8 DALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEELEA 57 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 46788999999999999999999999999999999999999999998844
No 22
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=95.51 E-value=0.069 Score=34.99 Aligned_cols=42 Identities=24% Similarity=0.355 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 101 WLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLT 142 (169)
Q Consensus 101 ~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~ 142 (169)
+|+.+-..|+.....|...++.|..||..|++++..|...+.
T Consensus 2 QlE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl~ 43 (45)
T PF02183_consen 2 QLERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKLQ 43 (45)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 456666677777777777788888888888888888877653
No 23
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=95.50 E-value=0.2 Score=35.39 Aligned_cols=57 Identities=14% Similarity=0.217 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 042014 90 KHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTDLQL 146 (169)
Q Consensus 90 ~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l~~ 146 (169)
..++.|=....+|+.||..|+.++..+...-..+...|..=+..+..+-.+|..|..
T Consensus 7 ~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~leq 63 (65)
T TIGR02449 7 AQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKALEQ 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 467888899999999999999999999999999999999999999999998888764
No 24
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=94.82 E-value=0.45 Score=33.66 Aligned_cols=56 Identities=27% Similarity=0.287 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042014 89 QKHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTDL 144 (169)
Q Consensus 89 q~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l 144 (169)
+.+++-+..++.....+|..|..+-.....++...-.+|..|++++..|++.|...
T Consensus 11 r~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~ 66 (69)
T PF14197_consen 11 RNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEEL 66 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46777788888888888888888777777777777888888888888888876654
No 25
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=94.80 E-value=0.18 Score=39.15 Aligned_cols=47 Identities=26% Similarity=0.360 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 97 SQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTD 143 (169)
Q Consensus 97 ~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~ 143 (169)
.+|..|....-.|..++..+.+.+..+..||..|+-|...||.+|..
T Consensus 8 d~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 8 DQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence 44555555555666677777777778888999999999999999877
No 26
>PRK10884 SH3 domain-containing protein; Provisional
Probab=94.41 E-value=0.5 Score=39.71 Aligned_cols=45 Identities=18% Similarity=0.106 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 042014 89 QKHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVE 133 (169)
Q Consensus 89 q~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e 133 (169)
++.++.+..++..|..+|++|..++..++.+.+.+.++|..++..
T Consensus 124 ~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~ 168 (206)
T PRK10884 124 QQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRT 168 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666777777777777776666666666666665543
No 27
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=93.95 E-value=2 Score=35.01 Aligned_cols=69 Identities=17% Similarity=0.096 Sum_probs=42.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 042014 70 KQRRMISNRESARRSRMRKQKHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELR 138 (169)
Q Consensus 70 R~RR~isNRESARRSR~RKq~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr 138 (169)
+.+....-+..-+.-.......+.++..-+..|.+|...|.-+++.+.+++..+..||..|-.......
T Consensus 117 ~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~~k 185 (194)
T PF08614_consen 117 RLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERWMQRK 185 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444445555666666666666666666777777777777777777777765554443
No 28
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=93.67 E-value=0.72 Score=33.09 Aligned_cols=54 Identities=30% Similarity=0.378 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHH--------HHHHHHHHHHHHHHHHHHHHHHhh
Q 042014 92 LDELWSQVVWLRNENHQLVDKLNHVSGCHD--------KVIQENAELKVEATELRQMLTDLQ 145 (169)
Q Consensus 92 leeLe~qV~~L~~eN~~L~~~l~~l~~~~~--------~l~~EN~~Lr~e~~~Lr~~L~~l~ 145 (169)
+-+.+.+++.|+.||=.|.-+|-.+.+.+. .+..+|-.|+.++..|+..|...+
T Consensus 2 lrEqe~~i~~L~KENF~LKLrI~fLee~l~~~~~~~~~~~~keNieLKve~~~L~~el~~~~ 63 (75)
T PF07989_consen 2 LREQEEQIDKLKKENFNLKLRIYFLEERLQKLGPESIEELLKENIELKVEVESLKRELQEKK 63 (75)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888999999999999998888877654 568889999999999988887654
No 29
>PRK10884 SH3 domain-containing protein; Provisional
Probab=93.59 E-value=0.72 Score=38.79 Aligned_cols=51 Identities=6% Similarity=0.009 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 042014 90 KHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQM 140 (169)
Q Consensus 90 ~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~ 140 (169)
++..+|..+++.+......|..++..|.+++..+..|+..|+++...++..
T Consensus 118 ~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~ 168 (206)
T PRK10884 118 QRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRT 168 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555555555555555555555555543
No 30
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=93.53 E-value=0.26 Score=46.47 Aligned_cols=52 Identities=21% Similarity=0.112 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 042014 89 QKHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQM 140 (169)
Q Consensus 89 q~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~ 140 (169)
|...++||.+++.|+.|...+.++...+++++..+..||..|+.++..+...
T Consensus 75 Q~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~~~~ 126 (475)
T PRK13729 75 QVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKALGAN 126 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 4478899999999999999999999999999999999999999999666554
No 31
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=93.44 E-value=0.55 Score=39.59 Aligned_cols=55 Identities=31% Similarity=0.336 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 042014 92 LDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTDLQL 146 (169)
Q Consensus 92 leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l~~ 146 (169)
..+|-..|+.|..-|..|..+...|......+...|+.|..++..|+..+..++.
T Consensus 3 t~dL~~~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qq 57 (193)
T PF14662_consen 3 TSDLLSCVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQ 57 (193)
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577788888888888888888888888888888899999999988888877763
No 32
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=93.25 E-value=0.51 Score=43.17 Aligned_cols=61 Identities=21% Similarity=0.219 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042014 85 RMRKQKHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTDLQ 145 (169)
Q Consensus 85 R~RKq~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l~ 145 (169)
=+|-+.+..-||.-+.+++.||..|.-+++.+.+.+...+.|+..|-.|+++..+..+.+.
T Consensus 122 f~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq~L~ 182 (401)
T PF06785_consen 122 FMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQQELN 182 (401)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566677778888899999999999999999999999999999999888777776666554
No 33
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=92.73 E-value=1.2 Score=39.02 Aligned_cols=59 Identities=20% Similarity=0.239 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-------HHHHHHHHhhhc
Q 042014 89 QKHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEAT-------ELRQMLTDLQLN 147 (169)
Q Consensus 89 q~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~-------~Lr~~L~~l~~~ 147 (169)
+..++++..+-..|..++..|..+++.+++.+..+..||++|.+... .|+.++.++.-.
T Consensus 141 kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~ 206 (290)
T COG4026 141 KEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPG 206 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhccc
Confidence 44567777777788888888888888888999999999999987554 455555555433
No 34
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=92.24 E-value=0.55 Score=36.51 Aligned_cols=47 Identities=23% Similarity=0.186 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 042014 90 KHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATE 136 (169)
Q Consensus 90 ~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~ 136 (169)
..+++|+.++..|-++...|+..+..+.+....|.-||..||..+.+
T Consensus 8 d~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 8 DQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence 35789999999999999999999999999999999999999999988
No 35
>smart00340 HALZ homeobox associated leucin zipper.
Probab=92.08 E-value=0.39 Score=31.61 Aligned_cols=28 Identities=29% Similarity=0.523 Sum_probs=24.3
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 042014 113 LNHVSGCHDKVIQENAELKVEATELRQM 140 (169)
Q Consensus 113 l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~ 140 (169)
.+.|.+++..|..||.+|..++.+||..
T Consensus 7 Ce~LKrcce~LteeNrRL~ke~~eLral 34 (44)
T smart00340 7 CELLKRCCESLTEENRRLQKEVQELRAL 34 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5667889999999999999999999854
No 36
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=92.01 E-value=1 Score=36.99 Aligned_cols=46 Identities=13% Similarity=0.186 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 98 QVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTD 143 (169)
Q Consensus 98 qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~ 143 (169)
+...+..||..|..++..|..++..|..||..|..+...+..-+..
T Consensus 98 ~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~ 143 (161)
T TIGR02894 98 SDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQT 143 (161)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677788888888888888888888888888888877777665554
No 37
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=91.97 E-value=6.8 Score=33.07 Aligned_cols=90 Identities=12% Similarity=0.173 Sum_probs=77.3
Q ss_pred ccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 64 MIINERKQRRMISNRESARRSRMRKQKHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTD 143 (169)
Q Consensus 64 ~~~deRR~RR~isNRESARRSR~RKq~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~ 143 (169)
+...|=|+-++..-.+-+.|.-..-+.+...|...+..-+..-......-..+..+...|..|....+.++..|++.|..
T Consensus 100 LA~~eirR~~LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~ 179 (192)
T PF11180_consen 100 LADVEIRRAQLEAQKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQRQVRQ 179 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677778888888999999999999999999999999988888888888999999999999999999999999999
Q ss_pred hhhcC--CCCCC
Q 042014 144 LQLNS--HYSSL 153 (169)
Q Consensus 144 l~~~~--~~~~~ 153 (169)
|+... +.+++
T Consensus 180 Lq~q~~~~~~~l 191 (192)
T PF11180_consen 180 LQRQANEPIPSL 191 (192)
T ss_pred HHHHhcCCCCCC
Confidence 88764 34444
No 38
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=91.97 E-value=4.3 Score=39.89 Aligned_cols=57 Identities=18% Similarity=0.102 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-------HHHHHHHHHHhhh
Q 042014 90 KHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVE-------ATELRQMLTDLQL 146 (169)
Q Consensus 90 ~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e-------~~~Lr~~L~~l~~ 146 (169)
+.-+-+..+..+|+.|-..|+.++....+++..++.|...|+.. +..|---|..||.
T Consensus 538 e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqd 601 (697)
T PF09726_consen 538 ECAESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQD 601 (697)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 44455777888899999999999998888888888888766653 5556666666664
No 39
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=91.93 E-value=2.8 Score=32.62 Aligned_cols=77 Identities=16% Similarity=0.244 Sum_probs=57.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042014 69 RKQRRMISNRESARRSRMRKQKHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTDLQ 145 (169)
Q Consensus 69 RR~RR~isNRESARRSR~RKq~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l~ 145 (169)
....|=..-||..-....++...++.|...+..|+..+..+..++..+......+..++..+...+...+..+..++
T Consensus 45 ~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk 121 (151)
T PF11559_consen 45 QQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLK 121 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555667788888888888888899999999998888888888888887777777776666665555555554443
No 40
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=91.83 E-value=3.8 Score=39.43 Aligned_cols=77 Identities=16% Similarity=0.281 Sum_probs=59.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042014 69 RKQRRMISNRESARRSRMRKQKHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTDLQ 145 (169)
Q Consensus 69 RR~RR~isNRESARRSR~RKq~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l~ 145 (169)
+....+.+-..........-+.+++.|+.++...+.++..|..+...+......+..|+..|..+..+++.+|..+.
T Consensus 150 kE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~LE 226 (546)
T PF07888_consen 150 KEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQRIRELE 226 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444666666777777777788888888888888888888888888888888888888888888888887776655
No 41
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=91.79 E-value=5 Score=31.17 Aligned_cols=55 Identities=20% Similarity=0.152 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 87 RKQKHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQML 141 (169)
Q Consensus 87 RKq~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L 141 (169)
+-+..++.|+.+++.+..+...+..+...+...+..+..-+..+++++..+...+
T Consensus 70 ~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~ 124 (151)
T PF11559_consen 70 RLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQL 124 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555555555555555555555555555555555555444
No 42
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=91.68 E-value=0.32 Score=39.98 Aligned_cols=46 Identities=26% Similarity=0.325 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 92 LDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQML 141 (169)
Q Consensus 92 leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L 141 (169)
|+++|.++++--..|.-|..+|.+ -..|..++++||.|+.+|++.|
T Consensus 2 LeD~EsklN~AIERnalLE~ELdE----KE~L~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 2 LEDFESKLNQAIERNALLESELDE----KENLREEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHCH--------------
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999843 4568888999999999998888
No 43
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=91.63 E-value=0.51 Score=41.09 Aligned_cols=35 Identities=29% Similarity=0.226 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHH----HHHHHHHHHH
Q 042014 98 QVVWLRNENHQLVDKLNHVSGCHDK----VIQENAELKV 132 (169)
Q Consensus 98 qV~~L~~eN~~L~~~l~~l~~~~~~----l~~EN~~Lr~ 132 (169)
.+.+|..||.+|+.++..+..+... +..||.+||+
T Consensus 67 ~~~~l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~ 105 (283)
T TIGR00219 67 DVNNLEYENYKLRQELLKKNQQLEILTQNLKQENVRLRE 105 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566778888888887766433332 4555555544
No 44
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=91.52 E-value=1.8 Score=31.66 Aligned_cols=45 Identities=24% Similarity=0.333 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 042014 93 DELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATEL 137 (169)
Q Consensus 93 eeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~L 137 (169)
++|..++..|+..-..|..++..+.+.+..|..||.-|..=+..|
T Consensus 19 ~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nL 63 (80)
T PF10224_consen 19 EELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNL 63 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666666666666666666666666666665555444
No 45
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=91.35 E-value=0.88 Score=29.77 Aligned_cols=39 Identities=26% Similarity=0.315 Sum_probs=32.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 042014 108 QLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTDLQL 146 (169)
Q Consensus 108 ~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l~~ 146 (169)
+|-.....|...++.|.++|..|+.+...|+..+..+..
T Consensus 2 QlE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~ 40 (45)
T PF02183_consen 2 QLERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKE 40 (45)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677888889999999999999999999988887764
No 46
>PRK02119 hypothetical protein; Provisional
Probab=91.26 E-value=4 Score=29.03 Aligned_cols=51 Identities=16% Similarity=0.137 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 042014 90 KHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTDLQLN 147 (169)
Q Consensus 90 ~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l~~~ 147 (169)
+++.+||.++.....-...|... ...-..+-..|+.++..|..+|.++...
T Consensus 9 ~Ri~~LE~rla~QE~tie~LN~~-------v~~Qq~~id~L~~ql~~L~~rl~~~~~~ 59 (73)
T PRK02119 9 NRIAELEMKIAFQENLLEELNQA-------LIEQQFVIDKMQVQLRYMANKLKDMQPS 59 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 45556666666555554444444 3444455577778888888888887643
No 47
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=91.19 E-value=3.5 Score=31.85 Aligned_cols=55 Identities=15% Similarity=0.152 Sum_probs=32.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 042014 71 QRRMISNRESARRSRMRKQKHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQ 125 (169)
Q Consensus 71 ~RR~isNRESARRSR~RKq~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~ 125 (169)
..-+..-.|...-|+..=.+.-++|+..+..|+.++......+..|..++..+..
T Consensus 18 La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~ 72 (107)
T PF09304_consen 18 LASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARR 72 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445556666665555556666666666666666666666666555555444
No 48
>PRK04406 hypothetical protein; Provisional
Probab=90.84 E-value=4.6 Score=28.94 Aligned_cols=53 Identities=4% Similarity=-0.024 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 042014 94 ELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTDLQL 146 (169)
Q Consensus 94 eLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l~~ 146 (169)
.|+.++..|+.....+-..+..|......-..+-..|+.++..|.++|..+..
T Consensus 8 ~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~~~ 60 (75)
T PRK04406 8 QLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNMDS 60 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34444444444444444444554444444555667888889999999988764
No 49
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=90.62 E-value=2.4 Score=33.70 Aligned_cols=56 Identities=27% Similarity=0.356 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 042014 92 LDELWSQVVWLRNENHQLVDKLNHVSGC--HDKVIQENAELKVEATELRQMLTDLQLN 147 (169)
Q Consensus 92 leeLe~qV~~L~~eN~~L~~~l~~l~~~--~~~l~~EN~~Lr~e~~~Lr~~L~~l~~~ 147 (169)
+.+|..++..|..++..|..++..|... ...+..+-..|+.++..|..+|..+..+
T Consensus 81 i~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~~ 138 (169)
T PF07106_consen 81 IKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRSG 138 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4555566666666666666666655543 3566667777777777777777777653
No 50
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=90.50 E-value=3 Score=30.65 Aligned_cols=55 Identities=15% Similarity=0.128 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042014 91 HLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTDLQ 145 (169)
Q Consensus 91 ~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l~ 145 (169)
-++.|+.+|...-....-|+-++..+.++...+..|+..++..-..|.+.-..++
T Consensus 5 vleqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk 59 (79)
T PRK15422 5 VFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLK 59 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4678999999999999999999999999888888888886666555655554443
No 51
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=90.41 E-value=2.7 Score=37.04 Aligned_cols=52 Identities=23% Similarity=0.196 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 90 KHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQML 141 (169)
Q Consensus 90 ~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L 141 (169)
..+-+|+.+-..|+.||..|+.....|..+.+.+..+=..|+++++++.+..
T Consensus 97 ~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~~~~~ 148 (292)
T KOG4005|consen 97 YEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAELKQQQ 148 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHHHH
Confidence 3567888888999999999999988888888888888888888888887654
No 52
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=90.21 E-value=2 Score=34.09 Aligned_cols=51 Identities=24% Similarity=0.243 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhHHHHHHHHHHHHHHHHHHHHH
Q 042014 89 QKHLDELWSQVVWLRNENHQLVDKL--NHVSGCHDKVIQENAELKVEATELRQ 139 (169)
Q Consensus 89 q~~leeLe~qV~~L~~eN~~L~~~l--~~l~~~~~~l~~EN~~Lr~e~~~Lr~ 139 (169)
++.+.+|..++..|+.+-..|...+ ..+......+..|+..|.+.+..|+.
T Consensus 85 ~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 85 REELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455666666666666666665554 44555566666666666666666654
No 53
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=89.98 E-value=2.2 Score=29.71 Aligned_cols=49 Identities=18% Similarity=0.264 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042014 90 KHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTDLQ 145 (169)
Q Consensus 90 ~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l~ 145 (169)
+++.+||.+++.+..-...|...+..-...+ ..|+.++..|..+|.++.
T Consensus 4 ~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I-------~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 4 ERIEELEIKLAFQEDTIEELNDVVTEQQRQI-------DRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhc
Confidence 5678888888888877777776666554444 445555666666666655
No 54
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=89.63 E-value=4.9 Score=28.66 Aligned_cols=51 Identities=16% Similarity=0.156 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 91 HLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQML 141 (169)
Q Consensus 91 ~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L 141 (169)
-+.-|..+|..|+.+|..|..+...|.+....+..|-......+..|=.+|
T Consensus 19 ti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl 69 (72)
T PF06005_consen 19 TIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGKL 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345566677777777666666677776666667666665555555444443
No 55
>PRK11637 AmiB activator; Provisional
Probab=89.56 E-value=9.6 Score=34.51 Aligned_cols=60 Identities=12% Similarity=0.128 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 042014 81 ARRSRMRKQKHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQM 140 (169)
Q Consensus 81 ARRSR~RKq~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~ 140 (169)
.+.....-...++.|+.++..+..+-..+..++..+..++..+..+=..++.++..++..
T Consensus 66 ~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~ 125 (428)
T PRK11637 66 QQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERL 125 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344445556666666666666666666666666666666655555555554444433
No 56
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=89.40 E-value=1.2 Score=30.23 Aligned_cols=50 Identities=24% Similarity=0.149 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 042014 87 RKQKHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQ 139 (169)
Q Consensus 87 RKq~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~ 139 (169)
|+..++.+|+.++..=+ |.. ...-......+..+..||..|++++..++.
T Consensus 1 kw~~Rl~ELe~klkaer-E~R--~~d~~~a~~rl~~l~~EN~~Lr~eL~~~r~ 50 (52)
T PF12808_consen 1 KWLLRLEELERKLKAER-EAR--SLDRSAARKRLSKLEGENRLLRAELERLRS 50 (52)
T ss_pred CHHHHHHHHHHHHHHhH-Hhc--cCCchhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35667777777665443 111 111234455677788899999888877653
No 57
>PF15058 Speriolin_N: Speriolin N terminus
Probab=89.28 E-value=1 Score=38.11 Aligned_cols=37 Identities=35% Similarity=0.416 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 042014 92 LDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATE 136 (169)
Q Consensus 92 leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~ 136 (169)
.++|..|++.|..||++|++.+. |..||..||.-+.+
T Consensus 7 yeGlrhqierLv~ENeeLKKlVr--------LirEN~eLksaL~e 43 (200)
T PF15058_consen 7 YEGLRHQIERLVRENEELKKLVR--------LIRENHELKSALGE 43 (200)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHH--------HHHHHHHHHHHHHH
Confidence 57889999999999999999875 56789999876433
No 58
>PF15294 Leu_zip: Leucine zipper
Probab=89.28 E-value=2.1 Score=37.87 Aligned_cols=51 Identities=22% Similarity=0.347 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042014 95 LWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTDLQ 145 (169)
Q Consensus 95 Le~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l~ 145 (169)
|..++..|+.||..|+.++..+..++-.+..|+..|..++.+|+......+
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~~ 180 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQGDQK 180 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 889999999999999999999999999999999999999999999655554
No 59
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=89.08 E-value=7.5 Score=32.76 Aligned_cols=53 Identities=15% Similarity=0.058 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 042014 86 MRKQKHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELR 138 (169)
Q Consensus 86 ~RKq~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr 138 (169)
..-.+.+..|..+++.|+..|..|...+....+....+..+-..+.....++.
T Consensus 52 ~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~ 104 (251)
T PF11932_consen 52 QELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELV 104 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456677777888888888888877777777777777666666554444333
No 60
>PRK04325 hypothetical protein; Provisional
Probab=88.87 E-value=4.6 Score=28.73 Aligned_cols=49 Identities=18% Similarity=0.127 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 042014 91 HLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTDLQL 146 (169)
Q Consensus 91 ~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l~~ 146 (169)
++.+||.++.....-...|...+. .-..+-..|+.++..|..+|.++..
T Consensus 10 Ri~~LE~klAfQE~tIe~LN~vv~-------~Qq~~I~~L~~ql~~L~~rl~~~~~ 58 (74)
T PRK04325 10 RITELEIQLAFQEDLIDGLNATVA-------RQQQTLDLLQAQLRLLYQQMRDANP 58 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 366666666666655555544443 3344457777888888888888763
No 61
>PRK00846 hypothetical protein; Provisional
Probab=88.66 E-value=6.6 Score=28.54 Aligned_cols=52 Identities=15% Similarity=0.082 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 042014 90 KHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTDLQLNS 148 (169)
Q Consensus 90 ~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l~~~~ 148 (169)
+++++||.+++....- +..|.........+-..|+.++..|..+|.+++...
T Consensus 13 ~Ri~~LE~rlAfQe~t-------Ie~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~~s~ 64 (77)
T PRK00846 13 ARLVELETRLSFQEQA-------LTELSEALADARLTGARNAELIRHLLEDLGKVRSTL 64 (77)
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 4455555555555544 444444444556677888889999999999988443
No 62
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=88.65 E-value=10 Score=30.81 Aligned_cols=52 Identities=35% Similarity=0.349 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 92 LDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTD 143 (169)
Q Consensus 92 leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~ 143 (169)
..+|..+|..|+.+|..|..++..+..+...+......|+.+...+..+-..
T Consensus 91 ~k~L~~~v~~Le~e~r~L~~~~~~~~~q~~rlee~e~~l~~e~~~l~er~~e 142 (158)
T PF09744_consen 91 RKDLQSQVEQLEEENRQLELKLKNLSDQSSRLEEREAELKKEYNRLHERERE 142 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHH
Confidence 3467788888888888888888877777777777777787777777766544
No 63
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=88.53 E-value=3.5 Score=29.11 Aligned_cols=48 Identities=25% Similarity=0.212 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 042014 91 HLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELR 138 (169)
Q Consensus 91 ~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr 138 (169)
+++..+.....|+.|+.....++..+-..+..|..||..|+.++..++
T Consensus 20 k~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r 67 (69)
T PF14197_consen 20 KNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEELR 67 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344445666667777777777777777777777777777777766655
No 64
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=88.30 E-value=4.8 Score=29.42 Aligned_cols=58 Identities=26% Similarity=0.289 Sum_probs=45.7
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 042014 90 KHLDELWS-QVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTDLQLN 147 (169)
Q Consensus 90 ~~leeLe~-qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l~~~ 147 (169)
..++.++. .-..|..+-..|+..|..|..+...+..||..|+.+-.-|+.-|..|-..
T Consensus 8 ~d~e~~~~e~k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~~ 66 (80)
T PF10224_consen 8 EDIEKLEKEEKEELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLMSS 66 (80)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34454543 36678888888899999999999999999999999999999888876543
No 65
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=88.00 E-value=3.8 Score=39.43 Aligned_cols=63 Identities=22% Similarity=0.320 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 80 SARRSRMRKQKHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLT 142 (169)
Q Consensus 80 SARRSR~RKq~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~ 142 (169)
.|.+.+.--.+.+.+....+..+.++...+...+..+......|..||.+|+.++..++..|.
T Consensus 131 ~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld 193 (546)
T KOG0977|consen 131 KAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLD 193 (546)
T ss_pred HHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 344444444455666677777888888888888888888888888999999998888887653
No 66
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=87.61 E-value=11 Score=31.84 Aligned_cols=40 Identities=13% Similarity=0.111 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 042014 91 HLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAEL 130 (169)
Q Consensus 91 ~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~L 130 (169)
.++.|+....++......+..++..+.++...+..-...|
T Consensus 64 e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l 103 (251)
T PF11932_consen 64 EIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQEL 103 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444333
No 67
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=87.35 E-value=7.6 Score=30.22 Aligned_cols=22 Identities=23% Similarity=0.445 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 042014 121 DKVIQENAELKVEATELRQMLT 142 (169)
Q Consensus 121 ~~l~~EN~~Lr~e~~~Lr~~L~ 142 (169)
-....++..|+..+.+++.++.
T Consensus 92 GEK~E~veEL~~Dv~DlK~myr 113 (120)
T PF12325_consen 92 GEKSEEVEELRADVQDLKEMYR 113 (120)
T ss_pred cchHHHHHHHHHHHHHHHHHHH
Confidence 3335567777777777776654
No 68
>PRK02793 phi X174 lysis protein; Provisional
Probab=87.02 E-value=8.7 Score=27.16 Aligned_cols=51 Identities=22% Similarity=0.126 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 042014 90 KHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTDLQLN 147 (169)
Q Consensus 90 ~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l~~~ 147 (169)
+++.+||.+++....-...|...+. .-..+-..|..++..|..+|..+...
T Consensus 8 ~Ri~~LE~~lafQe~tIe~Ln~~v~-------~Qq~~I~~L~~~l~~L~~rl~~~~~~ 58 (72)
T PRK02793 8 ARLAELESRLAFQEITIEELNVTVT-------AHEMEMAKLRDHLRLLTEKLKASQPS 58 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 4566777777766665555555443 33445577778888888888887644
No 69
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=86.93 E-value=2 Score=36.51 Aligned_cols=39 Identities=26% Similarity=0.307 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 042014 90 KHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKV 132 (169)
Q Consensus 90 ~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~ 132 (169)
..+.+|.++-+.|+.||..|..++..+ ..+..||.+||+
T Consensus 69 ~~~~~l~~en~~L~~e~~~l~~~~~~~----~~l~~en~~L~~ 107 (276)
T PRK13922 69 ASLFDLREENEELKKELLELESRLQEL----EQLEAENARLRE 107 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 334444444444444444444443322 245555655554
No 70
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=86.88 E-value=5.1 Score=33.83 Aligned_cols=52 Identities=19% Similarity=0.265 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 91 HLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLT 142 (169)
Q Consensus 91 ~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~ 142 (169)
.+++|+..-..|..+|..|...+..+.+..+.|..|+..|+.++..+.+.+.
T Consensus 9 ~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~ 60 (193)
T PF14662_consen 9 CVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQ 60 (193)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666666666666666666666666666666666666666555443
No 71
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=86.73 E-value=16 Score=29.80 Aligned_cols=61 Identities=15% Similarity=0.122 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 83 RSRMRKQKHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTD 143 (169)
Q Consensus 83 RSR~RKq~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~ 143 (169)
.-+...+..+..|+.++......+..|.+++..+.-++..++.....|..|-..|-.++..
T Consensus 123 ~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~ 183 (194)
T PF08614_consen 123 AELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERWMQ 183 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445566677777777777777777777777777777777777888877777777754
No 72
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.58 E-value=6.5 Score=34.62 Aligned_cols=60 Identities=13% Similarity=0.188 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 042014 87 RKQKHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTDLQLNSH 149 (169)
Q Consensus 87 RKq~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l~~~~~ 149 (169)
.....++++..++..++.++.++..++..+...+..+ +..++++-.-|..+++.|+....
T Consensus 56 ~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~---~~~I~~r~~~l~~raRAmq~nG~ 115 (265)
T COG3883 56 SLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAEL---KENIVERQELLKKRARAMQVNGT 115 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHcCC
Confidence 3445555555555555555555555555554443322 33445555555566666666543
No 73
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=86.37 E-value=3.3 Score=27.94 Aligned_cols=33 Identities=24% Similarity=0.397 Sum_probs=18.2
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042014 113 LNHVSGCHDKVIQENAELKVEATELRQMLTDLQ 145 (169)
Q Consensus 113 l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l~ 145 (169)
+..|...+..|..+|..|+.++..|...+..|.
T Consensus 28 ~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~ 60 (64)
T PF00170_consen 28 IEELEEKVEELESENEELKKELEQLKKEIQSLK 60 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555566666666666665555543
No 74
>PRK00295 hypothetical protein; Provisional
Probab=86.33 E-value=8.6 Score=26.90 Aligned_cols=49 Identities=16% Similarity=0.169 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042014 90 KHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTDLQ 145 (169)
Q Consensus 90 ~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l~ 145 (169)
+++.+||.+++....-...|...+.. -..+-..|+.++..|..+|.++.
T Consensus 5 ~Ri~~LE~kla~qE~tie~Ln~~v~~-------Qq~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 5 ERVTELESRQAFQDDTIQALNDVLVE-------QQRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhh
Confidence 34788888888887766666555543 33445677788888888888886
No 75
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=86.22 E-value=4.8 Score=38.13 Aligned_cols=55 Identities=25% Similarity=0.346 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH--------HHHHHHHHHHHHHHHHHHHHHHhh
Q 042014 91 HLDELWSQVVWLRNENHQLVDKLNHVSGCHD--------KVIQENAELKVEATELRQMLTDLQ 145 (169)
Q Consensus 91 ~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~--------~l~~EN~~Lr~e~~~Lr~~L~~l~ 145 (169)
.+..|..+=+.|..||..|+.+...+.++.. .+..|-..|+.+...++..|..|+
T Consensus 74 ~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~ 136 (472)
T TIGR03752 74 RLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQ 136 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666777777777665444443332 233344555555555555555554
No 76
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=86.10 E-value=3.5 Score=31.11 Aligned_cols=32 Identities=19% Similarity=0.312 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042014 87 RKQKHLDELWSQVVWLRNENHQLVDKLNHVSG 118 (169)
Q Consensus 87 RKq~~leeLe~qV~~L~~eN~~L~~~l~~l~~ 118 (169)
+.++++++++.++..|+.+|..|..++..+..
T Consensus 31 ~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 31 RVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 34555666666666666666666666665543
No 77
>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]
Probab=86.06 E-value=0.031 Score=50.67 Aligned_cols=53 Identities=25% Similarity=0.219 Sum_probs=46.1
Q ss_pred cHHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 042014 65 IINERKQRRMISNRESARR---SRMRKQKHLDELWSQVVWLR-NENHQLVDKLNHVS 117 (169)
Q Consensus 65 ~~deRR~RR~isNRESARR---SR~RKq~~leeLe~qV~~L~-~eN~~L~~~l~~l~ 117 (169)
..++|+..|+.+|+.+|.+ +|.||+.....|..+|+.|. .+|..|..++..|.
T Consensus 150 ~~~~~~~~rr~rn~~aA~~~~~~r~~~~~~t~~l~~qv~~l~~~~~~~l~~~is~Lq 206 (395)
T KOG1414|consen 150 EPEEKRLLRRERNPVAAAKPIPCRNRKKPSTSPLQRQVELLPPGINSPLSPQISPLQ 206 (395)
T ss_pred cchHHHHhhccccccccCCCCCCccccccccccccchHhhcCCCCCcccCccccccc
Confidence 4678999999999999999 99999999999999999999 88877666555443
No 78
>PRK02119 hypothetical protein; Provisional
Probab=85.70 E-value=6.9 Score=27.79 Aligned_cols=21 Identities=10% Similarity=-0.076 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 042014 92 LDELWSQVVWLRNENHQLVDK 112 (169)
Q Consensus 92 leeLe~qV~~L~~eN~~L~~~ 112 (169)
+..++.++..|+......-..
T Consensus 4 ~~~~e~Ri~~LE~rla~QE~t 24 (73)
T PRK02119 4 QQNLENRIAELEMKIAFQENL 24 (73)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666554444443
No 79
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=85.61 E-value=6.3 Score=35.36 Aligned_cols=55 Identities=24% Similarity=0.256 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042014 91 HLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTDLQ 145 (169)
Q Consensus 91 ~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l~ 145 (169)
.+-+|+.++..+..||..|...+.........|.+|...|+....+...+|.+.+
T Consensus 242 qivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~EaQ 296 (306)
T PF04849_consen 242 QIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLHEAQ 296 (306)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555666666666666666666666666666666666655555544
No 80
>PRK11637 AmiB activator; Provisional
Probab=85.54 E-value=23 Score=32.05 Aligned_cols=64 Identities=9% Similarity=0.101 Sum_probs=33.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHHH
Q 042014 74 MISNRESARRSRMRKQKHLDELWSQVVWLRNENHQLVDKLNHVS-------GCHDKVIQENAELKVEATEL 137 (169)
Q Consensus 74 ~isNRESARRSR~RKq~~leeLe~qV~~L~~eN~~L~~~l~~l~-------~~~~~l~~EN~~Lr~e~~~L 137 (169)
....+......+...+..+.+++.+...|..+-.+....+..|. ..+..+..+-..|...+.++
T Consensus 182 L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~~~~~~L~~~I~~l 252 (428)
T PRK11637 182 LAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELRANESRLRDSIARA 252 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555556666666666666666666665555333333333 33444444444444444444
No 81
>PRK09039 hypothetical protein; Validated
Probab=85.08 E-value=6.6 Score=35.13 Aligned_cols=51 Identities=18% Similarity=0.180 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042014 94 ELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTDL 144 (169)
Q Consensus 94 eLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l 144 (169)
+...+|..|+.+...|+.++..+...++....+....+.++..|.+.|...
T Consensus 134 e~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a 184 (343)
T PRK09039 134 RALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVA 184 (343)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456677777777777777777777777777777777777777777654
No 82
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=85.05 E-value=7.9 Score=26.93 Aligned_cols=18 Identities=17% Similarity=-0.071 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 042014 95 LWSQVVWLRNENHQLVDK 112 (169)
Q Consensus 95 Le~qV~~L~~eN~~L~~~ 112 (169)
|+.++..|+.....+-..
T Consensus 2 le~Ri~~LE~~la~qe~~ 19 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDT 19 (69)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444433333
No 83
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=84.86 E-value=4.6 Score=32.38 Aligned_cols=27 Identities=22% Similarity=0.347 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 042014 120 HDKVIQENAELKVEATELRQMLTDLQL 146 (169)
Q Consensus 120 ~~~l~~EN~~Lr~e~~~Lr~~L~~l~~ 146 (169)
-+.|+.+|..|..++..|++.+..|..
T Consensus 76 k~eLE~~k~~L~qqv~~L~~e~s~~~~ 102 (135)
T KOG4196|consen 76 KHELEKEKAELQQQVEKLKEENSRLRR 102 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455777777777777777777766554
No 84
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=84.26 E-value=4.6 Score=34.59 Aligned_cols=25 Identities=16% Similarity=0.296 Sum_probs=9.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHH
Q 042014 109 LVDKLNHVSGCHDKVIQENAELKVE 133 (169)
Q Consensus 109 L~~~l~~l~~~~~~l~~EN~~Lr~e 133 (169)
|..+.+.+...++++..||+.|+++
T Consensus 184 l~Kq~e~~~~EydrLlee~~~Lq~~ 208 (216)
T KOG1962|consen 184 LKKQSEGLQDEYDRLLEEYSKLQEQ 208 (216)
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHH
Confidence 3333333333344444444444333
No 85
>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]
Probab=84.04 E-value=5.6 Score=30.86 Aligned_cols=40 Identities=33% Similarity=0.382 Sum_probs=27.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 042014 109 LVDKLNHVSGCHDKVIQENAELKVEATELRQMLTDLQLNS 148 (169)
Q Consensus 109 L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l~~~~ 148 (169)
|+..+..|+++.+.+..||-.||.|-.-|.+-|..+-..+
T Consensus 68 LQnTLdDLSqRVdsVKEEnLKLrSENQVLGQYIeNLMSaS 107 (120)
T KOG3650|consen 68 LQNTLDDLSQRVDSVKEENLKLRSENQVLGQYIENLMSAS 107 (120)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhh
Confidence 4455666666677777788888888888888887765443
No 86
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=83.99 E-value=3.2 Score=31.29 Aligned_cols=31 Identities=19% Similarity=0.269 Sum_probs=15.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 042014 109 LVDKLNHVSGCHDKVIQENAELKVEATELRQ 139 (169)
Q Consensus 109 L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~ 139 (169)
+..++..+.++...+..+|..|+.++..|+.
T Consensus 32 l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 32 VNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3344444444444455556666666665543
No 87
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=83.84 E-value=9 Score=34.14 Aligned_cols=79 Identities=22% Similarity=0.335 Sum_probs=54.0
Q ss_pred cHHHHHHHHHHHhHH-----HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 042014 65 IINERKQRRMISNRE-----SARRSRMRK-QKHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELR 138 (169)
Q Consensus 65 ~~deRR~RR~isNRE-----SARRSR~RK-q~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr 138 (169)
..++|=++=|++|-. ++--...-- +..+++|+..+.++..++......++.+.+.+..+..|-..|++++...-
T Consensus 88 evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~~rd 167 (302)
T PF09738_consen 88 EVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLKQRD 167 (302)
T ss_pred HHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457777888999852 333333322 45677777777777777777777777777777777777777777776666
Q ss_pred HHHHH
Q 042014 139 QMLTD 143 (169)
Q Consensus 139 ~~L~~ 143 (169)
..|..
T Consensus 168 eli~k 172 (302)
T PF09738_consen 168 ELIEK 172 (302)
T ss_pred HHHHH
Confidence 66654
No 88
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=83.77 E-value=10 Score=33.44 Aligned_cols=56 Identities=14% Similarity=0.196 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042014 90 KHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTDLQ 145 (169)
Q Consensus 90 ~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l~ 145 (169)
..+..|..++..+..+....+.++..+..+...+..+-..+.++..++...|.+++
T Consensus 209 ~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~ 264 (325)
T PF08317_consen 209 EELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAE 264 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555555555555555555555555555555444
No 89
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=83.65 E-value=20 Score=37.27 Aligned_cols=63 Identities=19% Similarity=0.226 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 81 ARRSRMRKQKHLDELWSQV-VWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTD 143 (169)
Q Consensus 81 ARRSR~RKq~~leeLe~qV-~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~ 143 (169)
.+.+..+..+.+.+++.++ ..+..+-.+...+++.|..+...+...+.+|+++...+...+..
T Consensus 370 ~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~ 433 (1074)
T KOG0250|consen 370 LKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKE 433 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444 44444445555555555555555555666666665555544443
No 90
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=83.31 E-value=1.7 Score=30.38 Aligned_cols=29 Identities=21% Similarity=0.273 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 042014 105 ENHQLVDKLNHVSGCHDKVIQENAELKVE 133 (169)
Q Consensus 105 eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e 133 (169)
|...|+.+|..|..+...++.||..||.-
T Consensus 15 EVevLK~~I~eL~~~n~~Le~EN~~Lk~~ 43 (59)
T PF01166_consen 15 EVEVLKEQIAELEERNSQLEEENNLLKQN 43 (59)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33444555555555555666677777653
No 91
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=83.00 E-value=10 Score=33.33 Aligned_cols=58 Identities=24% Similarity=0.375 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042014 87 RKQKHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTDL 144 (169)
Q Consensus 87 RKq~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l 144 (169)
-=++..+++..++..+..+|..|..++..+...+..+..+=.+|+.+.+.|..++..+
T Consensus 132 d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l 189 (290)
T COG4026 132 DLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKL 189 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3456677788888888888888888888887777777777777777777766665544
No 92
>PHA02562 46 endonuclease subunit; Provisional
Probab=82.88 E-value=31 Score=31.60 Aligned_cols=42 Identities=19% Similarity=0.231 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 042014 92 LDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVE 133 (169)
Q Consensus 92 leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e 133 (169)
...|+.++..|..++..+..++..+..++..+..+-..+..+
T Consensus 360 ~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~ke 401 (562)
T PHA02562 360 AKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKE 401 (562)
T ss_pred HHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444333
No 93
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=82.50 E-value=6.9 Score=27.29 Aligned_cols=31 Identities=32% Similarity=0.388 Sum_probs=14.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 042014 108 QLVDKLNHVSGCHDKVIQENAELKVEATELR 138 (169)
Q Consensus 108 ~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr 138 (169)
.+..++..+..+...+..||..|+.++..|.
T Consensus 28 ~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~ 58 (85)
T TIGR02209 28 QLNNELQKLQLEIDKLQKEWRDLQLEVAELS 58 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3333444444444444445555555544443
No 94
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=82.35 E-value=14 Score=25.52 Aligned_cols=46 Identities=28% Similarity=0.315 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 91 HLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTD 143 (169)
Q Consensus 91 ~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~ 143 (169)
.++.|..+|..|.....+|...+..+. .+=...++|....-++|-.
T Consensus 4 kid~Ls~dVq~L~~kvdqLs~dv~~lr-------~~v~~ak~EAaRAN~RlDN 49 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLSSDVNALR-------ADVQAAKEEAARANQRLDN 49 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHh
Confidence 355556666655555555555555444 4444455555555555543
No 95
>PRK02793 phi X174 lysis protein; Provisional
Probab=82.33 E-value=12 Score=26.45 Aligned_cols=22 Identities=9% Similarity=-0.053 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 042014 94 ELWSQVVWLRNENHQLVDKLNH 115 (169)
Q Consensus 94 eLe~qV~~L~~eN~~L~~~l~~ 115 (169)
+++.++..|+......-..+..
T Consensus 5 ~~e~Ri~~LE~~lafQe~tIe~ 26 (72)
T PRK02793 5 SLEARLAELESRLAFQEITIEE 26 (72)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666555554444443
No 96
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=82.31 E-value=1.1 Score=33.42 Aligned_cols=52 Identities=19% Similarity=0.317 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 90 KHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQML 141 (169)
Q Consensus 90 ~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L 141 (169)
.+|+.|...+..|..+|..|..++..+...+..+...+..|+..+...+...
T Consensus 25 ~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l~~aq~~a 76 (131)
T PF05103_consen 25 DFLDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQRALIQAQETA 76 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCT----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhhhhhhH
Confidence 5788888899999999999998888888877777777777766655444443
No 97
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=82.12 E-value=9.2 Score=25.92 Aligned_cols=29 Identities=21% Similarity=0.414 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 88 KQKHLDELWSQVVWLRNENHQLVDKLNHV 116 (169)
Q Consensus 88 Kq~~leeLe~qV~~L~~eN~~L~~~l~~l 116 (169)
.++.+.+|+.+++.++.+|..|..++..+
T Consensus 22 ~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 22 LNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44556666666666666666666666555
No 98
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=81.83 E-value=15 Score=28.99 Aligned_cols=42 Identities=21% Similarity=0.249 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 042014 91 HLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKV 132 (169)
Q Consensus 91 ~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~ 132 (169)
.++.++.++..|..++..+-.+|..|..++..+..+=..+..
T Consensus 15 r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~ 56 (143)
T PF12718_consen 15 RAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEE 56 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555444444444444444433333333333333
No 99
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=81.81 E-value=22 Score=27.60 Aligned_cols=40 Identities=30% Similarity=0.361 Sum_probs=18.6
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 70 KQRRMISNRESARRSRMRKQKHLDELWSQVVWLRNENHQL 109 (169)
Q Consensus 70 R~RR~isNRESARRSR~RKq~~leeLe~qV~~L~~eN~~L 109 (169)
..||+..-..+.+.--.+=.+.-+.|..++..|..+|..+
T Consensus 24 ~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~ 63 (120)
T PF12325_consen 24 QLRRLEGELASLQEELARLEAERDELREEIVKLMEENEEL 63 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444445555555555555443
No 100
>smart00338 BRLZ basic region leucin zipper.
Probab=81.72 E-value=8.2 Score=26.01 Aligned_cols=33 Identities=27% Similarity=0.384 Sum_probs=20.3
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042014 113 LNHVSGCHDKVIQENAELKVEATELRQMLTDLQ 145 (169)
Q Consensus 113 l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l~ 145 (169)
+..|......+..+|..|+.++..|+..+..+.
T Consensus 28 ~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk 60 (65)
T smart00338 28 IEELERKVEQLEAENERLKKEIERLRRELEKLK 60 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555666667777777666666666554
No 101
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=81.69 E-value=9 Score=34.50 Aligned_cols=48 Identities=19% Similarity=0.283 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 042014 93 DELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQM 140 (169)
Q Consensus 93 eeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~ 140 (169)
+.|...+..|+.+|..|+.++......+..|..||..||.....+...
T Consensus 23 ~~l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~ 70 (310)
T PF09755_consen 23 EQLRKRIESLQQENRVLKRELETEKARCKHLQEENRALREASVRIQAK 70 (310)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555666666666666666666666666666666666665555543
No 102
>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]
Probab=81.61 E-value=0.23 Score=45.17 Aligned_cols=46 Identities=33% Similarity=0.344 Sum_probs=41.2
Q ss_pred cHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 65 IINERKQRRMISNRESARRSRMRKQKHLDELWSQVVWLRNENHQLV 110 (169)
Q Consensus 65 ~~deRR~RR~isNRESARRSR~RKq~~leeLe~qV~~L~~eN~~L~ 110 (169)
..++|+.|=.++||.+|-++|.|||.....|+.+...+..+|..|.
T Consensus 281 ~p~~~~~~~lern~~aas~~r~~~k~~~~~~~~~~~~~~~~n~~l~ 326 (395)
T KOG1414|consen 281 DPDERRRRFLERNRAAASRCRQKKKVWVLSLEKKAEELSSENGQLL 326 (395)
T ss_pred CchhhhhhhhhhhhhhhccccCCcccccccccccccchhhhhcccc
Confidence 4567775558999999999999999999999999999999998887
No 103
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=81.37 E-value=17 Score=32.82 Aligned_cols=45 Identities=13% Similarity=0.142 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 042014 94 ELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELR 138 (169)
Q Consensus 94 eLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr 138 (169)
.|..-+.+.+.+|..|..++..|.+.+..+..++..||+.++..+
T Consensus 69 ~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r 113 (319)
T PF09789_consen 69 NLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQR 113 (319)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhh
Confidence 344444555555555555555555555555555555555555443
No 104
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=81.23 E-value=30 Score=28.73 Aligned_cols=81 Identities=15% Similarity=0.106 Sum_probs=48.0
Q ss_pred cHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH--------------HHHHHHH
Q 042014 65 IINERKQRRMISNRESARRSRMRKQKHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKV--------------IQENAEL 130 (169)
Q Consensus 65 ~~deRR~RR~isNRESARRSR~RKq~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l--------------~~EN~~L 130 (169)
..+-+-.+.++...-+-+-.+.+...+...++.++.+-..++..+-.++..+...+..+ ..|..+|
T Consensus 85 GFnV~~l~~RL~kLL~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~l 164 (190)
T PF05266_consen 85 GFNVKFLRSRLNKLLSLKDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRL 164 (190)
T ss_pred CCccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666667777778888888888888888887777765444444444333333333333 3345555
Q ss_pred HHHHHHHHHHHHHhh
Q 042014 131 KVEATELRQMLTDLQ 145 (169)
Q Consensus 131 r~e~~~Lr~~L~~l~ 145 (169)
+..+..+.+.+.++.
T Consensus 165 ks~~~~l~~~~~~~e 179 (190)
T PF05266_consen 165 KSEAEALKEEIENAE 179 (190)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555555555555444
No 105
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=81.18 E-value=19 Score=26.42 Aligned_cols=75 Identities=16% Similarity=0.266 Sum_probs=59.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 69 RKQRRMISNRESARRSRMRKQKHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTD 143 (169)
Q Consensus 69 RR~RR~isNRESARRSR~RKq~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~ 143 (169)
++..+.+.+=|++=..|.-+....++++.+|..|...-..|..++......+..+..-|..+...+...-..|..
T Consensus 11 ~rL~~aid~LE~~v~~r~~~~~~~~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a~e~Ir~ 85 (89)
T PF13747_consen 11 TRLEAAIDRLEKAVDRRLERDRKRDELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSAIETIRA 85 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366666666677666666666666999999999999999999999999999999999998888777666555543
No 106
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=81.14 E-value=9.8 Score=32.87 Aligned_cols=41 Identities=15% Similarity=0.102 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 042014 90 KHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATEL 137 (169)
Q Consensus 90 ~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~L 137 (169)
++..|||.++..+..+...|+.+++ .|.++|-.|-+++.-|
T Consensus 93 ~Rn~ELE~elr~~~~~~~~L~~Ev~-------~L~~DN~kLYEKiRyl 133 (248)
T PF08172_consen 93 QRNAELEEELRKQQQTISSLRREVE-------SLRADNVKLYEKIRYL 133 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 4456777777777666666665554 4556777766655433
No 107
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=81.09 E-value=22 Score=30.85 Aligned_cols=32 Identities=19% Similarity=0.366 Sum_probs=20.4
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042014 114 NHVSGCHDKVIQENAELKVEATELRQMLTDLQ 145 (169)
Q Consensus 114 ~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l~ 145 (169)
.++..+...|..||..||.++..|++.|..+.
T Consensus 218 ~e~~~r~~~leken~~lr~~v~~l~~el~~~~ 249 (269)
T KOG3119|consen 218 DEMAHRVAELEKENEALRTQVEQLKKELATLR 249 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555666777777777777777666554
No 108
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=81.09 E-value=3.2 Score=38.17 Aligned_cols=32 Identities=31% Similarity=0.345 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 042014 98 QVVWLRNENHQLVDKLNHVSGCHDKVIQENAELK 131 (169)
Q Consensus 98 qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr 131 (169)
|...|+.||+.|+++++.|..+..+| ||..|+
T Consensus 33 e~~aLr~EN~~LKkEN~~Lk~eVerL--E~e~l~ 64 (420)
T PF07407_consen 33 ENFALRMENHSLKKENNDLKIEVERL--ENEMLR 64 (420)
T ss_pred hhhhHHHHhHHHHHHHHHHHHHHHHH--HHHhhh
Confidence 45667777777777777777777766 555665
No 109
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=81.05 E-value=8.5 Score=33.10 Aligned_cols=50 Identities=12% Similarity=0.129 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 042014 91 HLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQM 140 (169)
Q Consensus 91 ~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~ 140 (169)
-+-+|..|+..|+.|...|+..++.+..++..+......|..++..+...
T Consensus 55 ~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r~~~ 104 (263)
T PRK10803 55 LLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSLSSG 104 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45678888888888888888888888888888888888888888776543
No 110
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=80.83 E-value=10 Score=28.15 Aligned_cols=41 Identities=22% Similarity=0.353 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHh------HHHHHHHHHHHHHHHHHHHHHHH
Q 042014 101 WLRNENHQLVDKLNHVSG------CHDKVIQENAELKVEATELRQML 141 (169)
Q Consensus 101 ~L~~eN~~L~~~l~~l~~------~~~~l~~EN~~Lr~e~~~Lr~~L 141 (169)
.+..+|..|..+|..|.. .......||.+|++++..|+...
T Consensus 21 ~~~~e~~~L~eEI~~Lr~qve~nPevtr~A~EN~rL~ee~rrl~~f~ 67 (86)
T PF12711_consen 21 YLEEENEALKEEIQLLREQVEHNPEVTRFAMENIRLREELRRLQSFY 67 (86)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555554 34567889999999998888765
No 111
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=80.45 E-value=21 Score=26.31 Aligned_cols=73 Identities=16% Similarity=0.151 Sum_probs=59.1
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042014 73 RMISNRESARRSRMRKQKHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTDLQ 145 (169)
Q Consensus 73 R~isNRESARRSR~RKq~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l~ 145 (169)
++...++.....=..|...+..|+.++..|..|-..--.++-.+....+.+..||..|+..+..=+..+..|+
T Consensus 7 ~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i~~L~ 79 (96)
T PF08647_consen 7 SMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSSELIEQLK 79 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 4556666677777788889999999999999999998889989999999999999999888766665555544
No 112
>PRK09039 hypothetical protein; Validated
Probab=80.19 E-value=44 Score=29.94 Aligned_cols=7 Identities=29% Similarity=0.325 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 042014 80 SARRSRM 86 (169)
Q Consensus 80 SARRSR~ 86 (169)
.|+..|.
T Consensus 92 ~a~~~r~ 98 (343)
T PRK09039 92 AAEAERS 98 (343)
T ss_pred HHHHHHH
Confidence 3333333
No 113
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=80.18 E-value=44 Score=29.99 Aligned_cols=58 Identities=16% Similarity=0.228 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------HHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 042014 91 HLDELWSQVVWLRNENHQLVDKLNHVSG-----------CHDKVIQENAELKVEATELRQMLTDLQLNS 148 (169)
Q Consensus 91 ~leeLe~qV~~L~~eN~~L~~~l~~l~~-----------~~~~l~~EN~~Lr~e~~~Lr~~L~~l~~~~ 148 (169)
+++.|+.+...|..+|.+|.-++..+.+ +...|..+|+.+++....|+..|.+|...+
T Consensus 53 qL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Leddlsqt~aikeql~kyiReLEQaN 121 (333)
T KOG1853|consen 53 QLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQESQLEDDLSQTHAIKEQLRKYIRELEQAN 121 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444444444555555555554444433 245678889999999999999999888665
No 114
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=80.15 E-value=25 Score=32.91 Aligned_cols=40 Identities=20% Similarity=0.141 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 042014 87 RKQKHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQE 126 (169)
Q Consensus 87 RKq~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~E 126 (169)
..+.....|+.+++.++.+...+..++.........+...
T Consensus 56 ~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~ 95 (420)
T COG4942 56 EQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQ 95 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhh
Confidence 3444445555555555555555544444443333333333
No 115
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=80.03 E-value=33 Score=28.46 Aligned_cols=18 Identities=17% Similarity=0.211 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 042014 91 HLDELWSQVVWLRNENHQ 108 (169)
Q Consensus 91 ~leeLe~qV~~L~~eN~~ 108 (169)
.++.+..++..++..+..
T Consensus 85 ~i~~~r~~l~~~~~~l~~ 102 (302)
T PF10186_consen 85 RIEQKRERLEELRESLEQ 102 (302)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 116
>PF13935 Ead_Ea22: Ead/Ea22-like protein
Probab=79.89 E-value=21 Score=27.87 Aligned_cols=46 Identities=9% Similarity=0.079 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHh
Q 042014 99 VVWLRNENHQLVDKLNHVSGCH-DKVIQENAELKVEATELRQMLTDL 144 (169)
Q Consensus 99 V~~L~~eN~~L~~~l~~l~~~~-~~l~~EN~~Lr~e~~~Lr~~L~~l 144 (169)
...+.....+|..+|....... +....++......+..++++|++|
T Consensus 92 ~~~~a~~~~~l~~~Le~ae~~~~~~~~~~~~~~e~~~~~~~~riaEl 138 (139)
T PF13935_consen 92 NEDIALDVQKLRVELEAAEKRIAAELAEQAEAYEGEIADYAKRIAEL 138 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhc
Confidence 3444444444444444444333 334445555666777777777765
No 117
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=79.85 E-value=16 Score=30.11 Aligned_cols=44 Identities=18% Similarity=0.221 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 98 QVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQML 141 (169)
Q Consensus 98 qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L 141 (169)
+...|..-|..|+.+++........|..+...|..+...++..|
T Consensus 75 R~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL 118 (182)
T PF15035_consen 75 RSEELAQVNALLREQLEQARKANEALQEDLQKLTQDWERLRDEL 118 (182)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444443333
No 118
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=79.79 E-value=3.6 Score=32.27 Aligned_cols=30 Identities=30% Similarity=0.358 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 88 KQKHLDELWSQVVWLRNENHQLVDKLNHVS 117 (169)
Q Consensus 88 Kq~~leeLe~qV~~L~~eN~~L~~~l~~l~ 117 (169)
|..-+++|.+++..|+-||..|++++..-.
T Consensus 1 k~~t~EeLaaeL~kLqmENk~LKkkl~~~~ 30 (118)
T PF05812_consen 1 KDMTMEELAAELQKLQMENKALKKKLRQSV 30 (118)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 456789999999999999999999987654
No 119
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=79.73 E-value=9 Score=27.61 Aligned_cols=40 Identities=30% Similarity=0.467 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 042014 99 VVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELR 138 (169)
Q Consensus 99 V~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr 138 (169)
+.....+...+..+++.+..+...+..||..|+.|...|.
T Consensus 30 ~v~~~~~~~~~~~~l~~l~~~~~~l~~e~~~L~lE~~~l~ 69 (97)
T PF04999_consen 30 VVYSRHQSRQLFYELQQLEKEIDQLQEENERLRLEIATLS 69 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455666677777788888888888888998988888776
No 120
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=79.50 E-value=30 Score=29.68 Aligned_cols=53 Identities=13% Similarity=0.176 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 90 KHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLT 142 (169)
Q Consensus 90 ~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~ 142 (169)
+.++.|+.++.....+-..+..+...|..+.+.+..|=.+|.++...|+.++.
T Consensus 158 ~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 158 ADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence 33444444444444444445555555555566666666666666666666653
No 121
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=79.38 E-value=5 Score=31.44 Aligned_cols=30 Identities=20% Similarity=0.248 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 042014 104 NENHQLVDKLNHVSGCHDKVIQENAELKVE 133 (169)
Q Consensus 104 ~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e 133 (169)
.|...|+.+|..|.++..+|++||..||.-
T Consensus 67 EEVe~Lk~qI~eL~er~~~Le~EN~lLk~~ 96 (123)
T KOG4797|consen 67 EEVEVLKEQIRELEERNSALERENSLLKTL 96 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444555555566666777788888764
No 122
>KOG2010 consensus Double stranded RNA binding protein [General function prediction only]
Probab=79.35 E-value=20 Score=33.04 Aligned_cols=76 Identities=18% Similarity=0.213 Sum_probs=59.9
Q ss_pred cHHHHHHHHHHHhHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 042014 65 IINERKQRRMISNRESARRSRMR---------KQKHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEAT 135 (169)
Q Consensus 65 ~~deRR~RR~isNRESARRSR~R---------Kq~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~ 135 (169)
..++|-++-|.+| |+.--.| =|-.|++++.+++.-..++..+..++..+..-|..|...-.+||+.+.
T Consensus 123 EveekykkaMvsn---aQLDNEKsnl~YqVDtLKD~LeE~eeqLaeS~Re~eek~kE~er~Kh~~s~Lq~~~~elKe~l~ 199 (405)
T KOG2010|consen 123 EVEEKYKKAMVSN---AQLDNEKNNLIYQVDTLKDVLEEQEEQLAESYRENEEKSKELERQKHMCSVLQHKMEELKEGLR 199 (405)
T ss_pred HHHHHHHHHHHHH---HhhcccccceeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467778888887 2222222 146788899999999999999999999999999999999999999888
Q ss_pred HHHHHHHH
Q 042014 136 ELRQMLTD 143 (169)
Q Consensus 136 ~Lr~~L~~ 143 (169)
.--+.|..
T Consensus 200 QRdeliee 207 (405)
T KOG2010|consen 200 QRDELIEE 207 (405)
T ss_pred HHHHHHHH
Confidence 77777766
No 123
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=79.28 E-value=16 Score=29.40 Aligned_cols=15 Identities=33% Similarity=0.632 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHH
Q 042014 102 LRNENHQLVDKLNHV 116 (169)
Q Consensus 102 L~~eN~~L~~~l~~l 116 (169)
++.++..|+.+++.+
T Consensus 78 lr~~~e~L~~eie~l 92 (177)
T PF07798_consen 78 LRSENEKLQREIEKL 92 (177)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333344433333
No 124
>PRK00295 hypothetical protein; Provisional
Probab=79.04 E-value=19 Score=25.14 Aligned_cols=11 Identities=18% Similarity=0.091 Sum_probs=4.4
Q ss_pred HHHHHHHHHHH
Q 042014 96 WSQVVWLRNEN 106 (169)
Q Consensus 96 e~qV~~L~~eN 106 (169)
+.++..|+...
T Consensus 4 e~Ri~~LE~kl 14 (68)
T PRK00295 4 EERVTELESRQ 14 (68)
T ss_pred HHHHHHHHHHH
Confidence 33444444333
No 125
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=78.99 E-value=7.8 Score=38.15 Aligned_cols=52 Identities=23% Similarity=0.208 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042014 93 DELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTDL 144 (169)
Q Consensus 93 eeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l 144 (169)
.+|-.+|.+|..|+.-|+.++..+.+.-..++..+..|.+++..+++.+.+.
T Consensus 325 NDLIakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ea~~a 376 (832)
T KOG2077|consen 325 NDLIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAEAEDA 376 (832)
T ss_pred HHHHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788999999999999999999998888888888899988888888877654
No 126
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=78.80 E-value=32 Score=28.27 Aligned_cols=41 Identities=17% Similarity=0.269 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 042014 92 LDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKV 132 (169)
Q Consensus 92 leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~ 132 (169)
..+++.++..|..++..|..++..+...+..+...+...++
T Consensus 122 ~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~ 162 (189)
T PF10211_consen 122 KQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQ 162 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56888888889999988888888888888777666655433
No 127
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=78.74 E-value=25 Score=32.52 Aligned_cols=75 Identities=23% Similarity=0.318 Sum_probs=50.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHhHHHHHHHHHHHHHHHH
Q 042014 69 RKQRRMISNRESARRSRMRKQKHLDELWSQVVWLRNENHQLVDKLN--------------HVSGCHDKVIQENAELKVEA 134 (169)
Q Consensus 69 RR~RR~isNRESARRSR~RKq~~leeLe~qV~~L~~eN~~L~~~l~--------------~l~~~~~~l~~EN~~Lr~e~ 134 (169)
-|.|.+.-|-|.-|.-|.- +++=..+..+|+..|+.|..++- .|......+..||..|..++
T Consensus 75 ~kirk~~e~~eglr~i~es----~~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL 150 (401)
T PF06785_consen 75 TKIRKITEKDEGLRKIRES----VEERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQL 150 (401)
T ss_pred HHHHHHHhccHHHHHHHHH----HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhH
Confidence 3677777777777665543 33333444556666666665544 44455678889999999999
Q ss_pred HHHHHHHHHhhhc
Q 042014 135 TELRQMLTDLQLN 147 (169)
Q Consensus 135 ~~Lr~~L~~l~~~ 147 (169)
.++.+...++...
T Consensus 151 ~~l~~e~~Ekeee 163 (401)
T PF06785_consen 151 DALQQECGEKEEE 163 (401)
T ss_pred HHHHHHHhHhHHH
Confidence 9999888665543
No 128
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=78.54 E-value=17 Score=31.44 Aligned_cols=52 Identities=21% Similarity=0.209 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 042014 96 WSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTDLQLN 147 (169)
Q Consensus 96 e~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l~~~ 147 (169)
..|-+..+..|.+|-.++....+....+..|-..|++.-.+|-.++..++.-
T Consensus 85 tsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylqSY 136 (248)
T PF08172_consen 85 TSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYLQSY 136 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3444556666666666666666666777888888888888888888888753
No 129
>PRK14127 cell division protein GpsB; Provisional
Probab=78.46 E-value=5.9 Score=30.49 Aligned_cols=28 Identities=21% Similarity=0.254 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 042014 119 CHDKVIQENAELKVEATELRQMLTDLQL 146 (169)
Q Consensus 119 ~~~~l~~EN~~Lr~e~~~Lr~~L~~l~~ 146 (169)
.+..+..||..|++++..|...|..++.
T Consensus 38 dye~l~~e~~~Lk~e~~~l~~~l~e~~~ 65 (109)
T PRK14127 38 DYEAFQKEIEELQQENARLKAQVDELTK 65 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444443
No 130
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=78.27 E-value=7.9 Score=36.71 Aligned_cols=38 Identities=11% Similarity=0.156 Sum_probs=26.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 042014 109 LVDKLNHVSGCHDKVIQENAELKVEATELRQMLTDLQL 146 (169)
Q Consensus 109 L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l~~ 146 (169)
|..+-..+.++..++..|=.+|...+..|..+|..+..
T Consensus 107 v~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~~l~~~~~ 144 (472)
T TIGR03752 107 VQSETQELTKEIEQLKSERQQLQGLIDQLQRRLAGVLT 144 (472)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 43444455667777777877888888888888876543
No 131
>PRK00736 hypothetical protein; Provisional
Probab=78.18 E-value=20 Score=24.99 Aligned_cols=50 Identities=18% Similarity=0.188 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 042014 90 KHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTDLQL 146 (169)
Q Consensus 90 ~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l~~ 146 (169)
.++.+||.++..+..-...|...+..-. .+-..|..++..|..+|.++..
T Consensus 5 ~Ri~~LE~klafqe~tie~Ln~~v~~Qq-------~~i~~L~~ql~~L~~rl~~~~~ 54 (68)
T PRK00736 5 ERLTELEIRVAEQEKTIEELSDQLAEQW-------KTVEQMRKKLDALTERFLSLEE 54 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhcc
Confidence 4588888888888877666666554433 3346677788888888887764
No 132
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=77.95 E-value=38 Score=33.05 Aligned_cols=73 Identities=21% Similarity=0.318 Sum_probs=46.3
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 042014 74 MISNRESARRSRMRKQKHLDELWSQVVWLRNENHQLVDKLNHVS---GCHDKVIQENAELKVEATELRQMLTDLQL 146 (169)
Q Consensus 74 ~isNRESARRSR~RKq~~leeLe~qV~~L~~eN~~L~~~l~~l~---~~~~~l~~EN~~Lr~e~~~Lr~~L~~l~~ 146 (169)
...|.+.--+--..+..++.+|+..+..+........+-+..+. ....+.++.|..||.++.+|...+..|..
T Consensus 106 qv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAlsQN~eLK~QL~Elq~~Fv~ltn 181 (617)
T PF15070_consen 106 QVENNEQLSRLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATASRALSQNRELKEQLAELQDAFVKLTN 181 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 33444433333336778888888888887766544333333332 34566778888888888888887766653
No 133
>PRK04325 hypothetical protein; Provisional
Probab=77.92 E-value=22 Score=25.25 Aligned_cols=47 Identities=15% Similarity=0.130 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042014 91 HLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTDL 144 (169)
Q Consensus 91 ~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l 144 (169)
+++.++.++..|+.....+-..|+.|.. .+..... ++..|++.|..|
T Consensus 3 ~~~~~e~Ri~~LE~klAfQE~tIe~LN~---vv~~Qq~----~I~~L~~ql~~L 49 (74)
T PRK04325 3 AVQEMEDRITELEIQLAFQEDLIDGLNA---TVARQQQ----TLDLLQAQLRLL 49 (74)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH----HHHHHHHHHHHH
Confidence 3556777777777666655555544321 2222222 345666666655
No 134
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=77.82 E-value=16 Score=32.68 Aligned_cols=35 Identities=26% Similarity=0.316 Sum_probs=24.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042014 111 DKLNHVSGCHDKVIQENAELKVEATELRQMLTDLQ 145 (169)
Q Consensus 111 ~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l~ 145 (169)
.+-+.+.-++..|..+|.+||.++.+|.+.|..|.
T Consensus 248 ae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylK 282 (294)
T KOG4571|consen 248 AEKEALLGELEGLEKRNEELKDQASELEREIRYLK 282 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555667778888888888888887777665
No 135
>PRK04406 hypothetical protein; Provisional
Probab=77.69 E-value=22 Score=25.39 Aligned_cols=49 Identities=12% Similarity=0.144 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 042014 90 KHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELR 138 (169)
Q Consensus 90 ~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr 138 (169)
.++.+||.+++.+..-...|...+..-...++.+..+=..|..++..+.
T Consensus 11 ~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 59 (75)
T PRK04406 11 ERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNMD 59 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5789999999999999999999888888888888888788877776655
No 136
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=77.42 E-value=15 Score=30.30 Aligned_cols=43 Identities=23% Similarity=0.206 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 042014 94 ELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQM 140 (169)
Q Consensus 94 eLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~ 140 (169)
=.+.|+..|+.+|..|..++..|.. ...+|..+-..+..+...
T Consensus 44 L~erQ~~~LR~~~~~L~~~l~~Li~----~Ar~Ne~~~~~~~~l~l~ 86 (225)
T PF04340_consen 44 LVERQLERLRERNRQLEEQLEELIE----NARENEAIFQRLHRLVLA 86 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666665543 445566665555444433
No 137
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=77.38 E-value=8.2 Score=26.16 Aligned_cols=30 Identities=30% Similarity=0.376 Sum_probs=19.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 042014 108 QLVDKLNHVSGCHDKVIQENAELKVEATEL 137 (169)
Q Consensus 108 ~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~L 137 (169)
.+..++..+..+.+.+..+|..|+.++..|
T Consensus 21 ~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 21 QLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444555555566666677777777777777
No 138
>PRK00736 hypothetical protein; Provisional
Probab=77.19 E-value=22 Score=24.83 Aligned_cols=9 Identities=11% Similarity=0.047 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 042014 97 SQVVWLRNE 105 (169)
Q Consensus 97 ~qV~~L~~e 105 (169)
.++..|+..
T Consensus 5 ~Ri~~LE~k 13 (68)
T PRK00736 5 ERLTELEIR 13 (68)
T ss_pred HHHHHHHHH
Confidence 334444333
No 139
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=77.12 E-value=16 Score=27.60 Aligned_cols=40 Identities=13% Similarity=0.143 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 103 RNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLT 142 (169)
Q Consensus 103 ~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~ 142 (169)
+.+-+-...+...+.+.+..+..+|..|..++.+++-.+.
T Consensus 7 R~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk~~~g 46 (96)
T PF11365_consen 7 RRQLQFVEEEAELLRRKLSELEDENKQLTEELNKYKSKYG 46 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3333333334444444556688899999999888877543
No 140
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=76.46 E-value=13 Score=31.95 Aligned_cols=40 Identities=20% Similarity=0.214 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 042014 87 RKQKHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQE 126 (169)
Q Consensus 87 RKq~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~E 126 (169)
-=+.+++.|..+|..|+.+++++..+++.+.++-..+-.+
T Consensus 58 ~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~d 97 (263)
T PRK10803 58 QLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQ 97 (263)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578899999999999999999999999988776665544
No 141
>PHA03162 hypothetical protein; Provisional
Probab=76.20 E-value=2.2 Score=34.12 Aligned_cols=29 Identities=24% Similarity=0.409 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 87 RKQKHLDELWSQVVWLRNENHQLVDKLNH 115 (169)
Q Consensus 87 RKq~~leeLe~qV~~L~~eN~~L~~~l~~ 115 (169)
+|+.-+++|..++..|+-||..|.+++..
T Consensus 10 k~~~tmEeLaaeL~kLqmENK~LKkkl~~ 38 (135)
T PHA03162 10 KAQPTMEDLAAEIAKLQLENKALKKKIKE 38 (135)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46677999999999999999999999843
No 142
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=76.08 E-value=3.5 Score=26.95 Aligned_cols=34 Identities=24% Similarity=0.265 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 042014 101 WLRNENHQLVDKLNHVSGCHDKVIQENAELKVEA 134 (169)
Q Consensus 101 ~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~ 134 (169)
+|-..|..+..++..+......|..||..||+++
T Consensus 11 ~laK~Ns~l~~ki~~le~~~s~L~~en~~lR~~~ 44 (46)
T PF07558_consen 11 ELAKRNSALSIKIQELENEVSKLLNENVNLRELV 44 (46)
T ss_dssp -------------------HHHHHHHHHHHHHHH
T ss_pred HHHhHhHHHHhHHHHHHhHHHHHHHHHHHHHHHh
Confidence 3444455555555555555555566666666554
No 143
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=76.04 E-value=30 Score=25.96 Aligned_cols=30 Identities=27% Similarity=0.459 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHh
Q 042014 89 QKHLDELWSQVVWL--RNENHQLVDKLNHVSG 118 (169)
Q Consensus 89 q~~leeLe~qV~~L--~~eN~~L~~~l~~l~~ 118 (169)
..++..+|.++..| ..+-+.|...+..+.-
T Consensus 48 ~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G 79 (106)
T PF10805_consen 48 DRRLQALETKLEHLPTRDDVHDLQLELAELRG 79 (106)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 44555566666655 4455555555444433
No 144
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=76.00 E-value=24 Score=31.25 Aligned_cols=56 Identities=18% Similarity=0.300 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042014 90 KHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTDLQ 145 (169)
Q Consensus 90 ~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l~ 145 (169)
..|+.+...+..|..+|..+..+.......+..+..|+..+..++..+...+..|+
T Consensus 244 ~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~~~~~~k~~kLe 299 (309)
T PF09728_consen 244 KEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKELEKLKKKIEKLE 299 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66788888888999999999998888888888888888887777777776655443
No 145
>PRK10963 hypothetical protein; Provisional
Probab=75.97 E-value=13 Score=31.05 Aligned_cols=37 Identities=22% Similarity=0.171 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 042014 97 SQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATEL 137 (169)
Q Consensus 97 ~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~L 137 (169)
.|+..|+.+|..|..++..+.. ...+|..+-..+..|
T Consensus 44 rQ~~~LR~r~~~Le~~l~~Li~----~A~~Ne~l~~~~~~l 80 (223)
T PRK10963 44 WQMARQRNHIHVLEEEMTLLME----QAIANEDLFYRLLPL 80 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 3444444444444444444332 334444444444333
No 146
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=75.73 E-value=56 Score=30.66 Aligned_cols=54 Identities=13% Similarity=0.207 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 042014 91 HLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTDLQLN 147 (169)
Q Consensus 91 ~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l~~~ 147 (169)
.+..++.++.+...++..+.+.|..+...+..+..+- +++-..|-..|..++..
T Consensus 74 ~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~---r~qr~~La~~L~A~~r~ 127 (420)
T COG4942 74 EIASLEAQLIETADDLKKLRKQIADLNARLNALEVQE---REQRRRLAEQLAALQRS 127 (420)
T ss_pred HHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhc
Confidence 3344444444444444444444444444444443332 44445555556666654
No 147
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=75.30 E-value=27 Score=36.34 Aligned_cols=63 Identities=21% Similarity=0.277 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 042014 84 SRMRKQKHLDELWSQVVWLRNEN-HQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTDLQL 146 (169)
Q Consensus 84 SR~RKq~~leeLe~qV~~L~~eN-~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l~~ 146 (169)
+-.+++..++.|+.+|..++.+- ..+..++..+...+..|..|+..|..++..|+..+.++..
T Consensus 366 ~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~ 429 (1074)
T KOG0250|consen 366 SIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKE 429 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455666777888888877766 6677777777788888888888888888888877776653
No 148
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=74.93 E-value=27 Score=24.73 Aligned_cols=58 Identities=19% Similarity=0.266 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042014 88 KQKHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTDLQ 145 (169)
Q Consensus 88 Kq~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l~ 145 (169)
|.+.+..|-.+-..|......+...|..|......+..+...|+..+..+...+..+.
T Consensus 10 KDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~ 67 (74)
T PF12329_consen 10 KDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLE 67 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666666666666666666666666655555555555555555555555554443
No 149
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=74.91 E-value=60 Score=30.98 Aligned_cols=53 Identities=21% Similarity=0.176 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 91 HLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTD 143 (169)
Q Consensus 91 ~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~ 143 (169)
..+.|+.++.+|..+|..|+..+..|...++.+..+-.++-.++..+|.+|..
T Consensus 298 e~Enlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~ 350 (502)
T KOG0982|consen 298 EKENLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLIC 350 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 44556677888888888888888888888888888888888888887777654
No 150
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.56 E-value=33 Score=35.03 Aligned_cols=66 Identities=15% Similarity=0.094 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 042014 81 ARRSRMRKQKHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTDLQL 146 (169)
Q Consensus 81 ARRSR~RKq~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l~~ 146 (169)
=+--+.+-+-.++.|...+..|..+|.+|..+++.....+.++..++.-||.++...+....+|..
T Consensus 662 yK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~~~~~~~~~~q 727 (970)
T KOG0946|consen 662 YKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLGIISSKQRDLLQ 727 (970)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHh
Confidence 444455566777888888888888888888888888888888888888888887755555544443
No 151
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=74.34 E-value=38 Score=26.77 Aligned_cols=23 Identities=22% Similarity=0.268 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 042014 92 LDELWSQVVWLRNENHQLVDKLN 114 (169)
Q Consensus 92 leeLe~qV~~L~~eN~~L~~~l~ 114 (169)
+..|..++..|..+...+...+.
T Consensus 37 I~sL~~K~~~lE~eld~~~~~l~ 59 (143)
T PF12718_consen 37 ITSLQKKNQQLEEELDKLEEQLK 59 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 152
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=73.94 E-value=52 Score=34.44 Aligned_cols=79 Identities=22% Similarity=0.231 Sum_probs=68.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 042014 68 ERKQRRMISNRESARRSRMRKQKHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTDLQL 146 (169)
Q Consensus 68 eRR~RR~isNRESARRSR~RKq~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l~~ 146 (169)
.|-.+=.+.||+--..--+++-..+++++.+.-.|..++..|..++..|.+.+.++...++.|...-..|.-....|+.
T Consensus 372 ~ralkllLEnrrlt~tleelqsss~Ee~~SK~leleke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~ 450 (1195)
T KOG4643|consen 372 DRALKLLLENRRLTGTLEELQSSSYEELISKHLELEKEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLE 450 (1195)
T ss_pred HHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567778899999989999999999999999999999999999999999999999999888888877777766665553
No 153
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=73.80 E-value=28 Score=29.85 Aligned_cols=53 Identities=26% Similarity=0.257 Sum_probs=29.8
Q ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 042014 88 KQKHLDEL---WSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQM 140 (169)
Q Consensus 88 Kq~~leeL---e~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~ 140 (169)
|..|+++| ..-+..|+.....+..+.+...+....+..|=..|+.++.++|..
T Consensus 48 r~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 48 RMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555 345555555555555555555555555666666666666666655
No 154
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=73.36 E-value=28 Score=24.20 Aligned_cols=43 Identities=21% Similarity=0.339 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042014 96 WSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTDLQ 145 (169)
Q Consensus 96 e~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l~ 145 (169)
..++...+..|..+..++... ...|..|..++..|+..+..+.
T Consensus 17 ~eEL~kvk~~n~~~e~kLqea-------E~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 17 QEELTKVKSANLAFESKLQEA-------EKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhh
Confidence 344455666676666666654 4455555555555555555443
No 155
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=73.23 E-value=33 Score=30.87 Aligned_cols=27 Identities=19% Similarity=0.292 Sum_probs=14.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 042014 108 QLVDKLNHVSGCHDKVIQENAELKVEA 134 (169)
Q Consensus 108 ~L~~~l~~l~~~~~~l~~EN~~Lr~e~ 134 (169)
.|..++-.+..++..+..||..|...+
T Consensus 238 ~LlsqivdlQ~r~k~~~~EnEeL~q~L 264 (306)
T PF04849_consen 238 SLLSQIVDLQQRCKQLAAENEELQQHL 264 (306)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 344455555555555556655554443
No 156
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=72.99 E-value=37 Score=28.91 Aligned_cols=31 Identities=19% Similarity=0.321 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042014 88 KQKHLDELWSQVVWLRNENHQLVDKLNHVSG 118 (169)
Q Consensus 88 Kq~~leeLe~qV~~L~~eN~~L~~~l~~l~~ 118 (169)
-+..+..|+.++..|+..|..|...+..+..
T Consensus 221 ~r~~~~~l~~el~~l~~~~~~Le~~l~~le~ 251 (312)
T PF00038_consen 221 LRRQIQSLQAELESLRAKNASLERQLRELEQ 251 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhHhhhhhhccccchhhhhhhHHHHHH
Confidence 3344455555555555555555555554443
No 157
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=72.74 E-value=17 Score=35.65 Aligned_cols=27 Identities=22% Similarity=0.224 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 91 HLDELWSQVVWLRNENHQLVDKLNHVS 117 (169)
Q Consensus 91 ~leeLe~qV~~L~~eN~~L~~~l~~l~ 117 (169)
+..+|+..+.+|+.++..|..++..+.
T Consensus 437 e~~~L~~~~ee~k~eie~L~~~l~~~~ 463 (652)
T COG2433 437 ENSELKRELEELKREIEKLESELERFR 463 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444443
No 158
>PHA03155 hypothetical protein; Provisional
Probab=72.62 E-value=5.4 Score=31.23 Aligned_cols=26 Identities=31% Similarity=0.339 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 90 KHLDELWSQVVWLRNENHQLVDKLNH 115 (169)
Q Consensus 90 ~~leeLe~qV~~L~~eN~~L~~~l~~ 115 (169)
.-+++|..++..|+-||..|++++..
T Consensus 8 ~tvEeLaaeL~kL~~ENK~LKkkl~~ 33 (115)
T PHA03155 8 ADVEELEKELQKLKIENKALKKKLLQ 33 (115)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 35899999999999999999999865
No 159
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=72.55 E-value=44 Score=30.17 Aligned_cols=64 Identities=14% Similarity=0.130 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 78 RESARRSRMRKQKHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQML 141 (169)
Q Consensus 78 RESARRSR~RKq~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L 141 (169)
-|+++|-....+-++.+++.-...=+..-.....+-+.+.+++.++..||..|+.++.+...+.
T Consensus 181 lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQLddA~~K~ 244 (305)
T PF14915_consen 181 LESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSENMLLRQQLDDAHNKA 244 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777777777777655555555555666777888899999999999999998887654
No 160
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=72.43 E-value=22 Score=36.98 Aligned_cols=60 Identities=20% Similarity=0.257 Sum_probs=42.3
Q ss_pred HHHhHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHH
Q 042014 74 MISNRESARRSRMR------------KQKHLDELWSQVVWLRNENHQLVDKLNHVSG---CHDKVIQENAELKVE 133 (169)
Q Consensus 74 ~isNRESARRSR~R------------Kq~~leeLe~qV~~L~~eN~~L~~~l~~l~~---~~~~l~~EN~~Lr~e 133 (169)
..-+|..|.....+ +.+++++|+..+..|+.||+.|..+|..|.. ....++..|..+...
T Consensus 502 ~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~t~qn~~~LEq~~n~lE~~ 576 (1195)
T KOG4643|consen 502 LELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHLLKQIQSLKTTSQNGALLEQNNNDLELI 576 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHH
Confidence 34456666655544 4478999999999999999999999998876 233444555444433
No 161
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=72.42 E-value=45 Score=30.77 Aligned_cols=56 Identities=11% Similarity=0.184 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 88 KQKHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTD 143 (169)
Q Consensus 88 Kq~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~ 143 (169)
.++.++.+++..+.|+.--+.|..-.+.|......|+++=..|.+.+.-|....++
T Consensus 223 ~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~e 278 (365)
T KOG2391|consen 223 REEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVRE 278 (365)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 45566666666666666666666666666555566666666666666666666555
No 162
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=72.20 E-value=70 Score=28.32 Aligned_cols=70 Identities=19% Similarity=0.180 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC
Q 042014 82 RRSRMRKQKHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTDLQLNSHYS 151 (169)
Q Consensus 82 RRSR~RKq~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l~~~~~~~ 151 (169)
..-+..=.+.+..|+.+...|..+-.......+.+......+..|...|..++......|..++.-+.|.
T Consensus 70 E~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~ktNv~n 139 (314)
T PF04111_consen 70 EKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLRKTNVYN 139 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT--TTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchh
Confidence 3334444455666777777777777777777777777778888888999999999999988888776664
No 163
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=72.16 E-value=14 Score=24.15 Aligned_cols=27 Identities=19% Similarity=0.282 Sum_probs=15.3
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 042014 113 LNHVSGCHDKVIQENAELKVEATELRQ 139 (169)
Q Consensus 113 l~~l~~~~~~l~~EN~~Lr~e~~~Lr~ 139 (169)
+..+...+..|..+|..|+.++..|+.
T Consensus 27 ~~~le~~~~~L~~en~~L~~~i~~L~~ 53 (54)
T PF07716_consen 27 EEELEQEVQELEEENEQLRQEIAQLER 53 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344444555566666666666666543
No 164
>PRK00846 hypothetical protein; Provisional
Probab=71.90 E-value=35 Score=24.76 Aligned_cols=20 Identities=10% Similarity=-0.002 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 042014 95 LWSQVVWLRNENHQLVDKLN 114 (169)
Q Consensus 95 Le~qV~~L~~eN~~L~~~l~ 114 (169)
|...|.........|..++.
T Consensus 32 LN~~v~~qq~~I~~L~~ql~ 51 (77)
T PRK00846 32 LSEALADARLTGARNAELIR 51 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 165
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=71.80 E-value=67 Score=27.89 Aligned_cols=10 Identities=20% Similarity=0.398 Sum_probs=5.0
Q ss_pred CCCCCCCCCc
Q 042014 153 LKDLDDVPCC 162 (169)
Q Consensus 153 ~~~l~~~~~~ 162 (169)
+.+|.+.-|.
T Consensus 192 vvpl~g~~C~ 201 (239)
T COG1579 192 VVPLEGRVCG 201 (239)
T ss_pred EEeecCCccc
Confidence 3455555553
No 166
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=71.43 E-value=40 Score=27.81 Aligned_cols=12 Identities=25% Similarity=0.216 Sum_probs=5.6
Q ss_pred HHHHHHHHHHhH
Q 042014 67 NERKQRRMISNR 78 (169)
Q Consensus 67 deRR~RR~isNR 78 (169)
+..|+.|+..+|
T Consensus 64 ~~AKkqRk~~~~ 75 (161)
T TIGR02894 64 ELAKKQRKELKR 75 (161)
T ss_pred HHHHHHHhcccc
Confidence 334555554444
No 167
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=71.37 E-value=49 Score=28.18 Aligned_cols=36 Identities=22% Similarity=0.198 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 042014 88 KQKHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKV 123 (169)
Q Consensus 88 Kq~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l 123 (169)
-+..+.++..++..|+.+...|..+...|...+..+
T Consensus 214 ~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~l 249 (312)
T PF00038_consen 214 AKEELKELRRQIQSLQAELESLRAKNASLERQLREL 249 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHH
Confidence 344455555555555555555555555555444433
No 168
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=70.84 E-value=29 Score=33.64 Aligned_cols=45 Identities=33% Similarity=0.304 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 042014 91 HLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEAT 135 (169)
Q Consensus 91 ~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~ 135 (169)
.+++|..++..+..+...|..++..+.+.......++..|.+++.
T Consensus 336 ~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~ 380 (594)
T PF05667_consen 336 QLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELK 380 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444445555555555555555555555544444
No 169
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=70.76 E-value=42 Score=25.14 Aligned_cols=58 Identities=10% Similarity=0.130 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 042014 92 LDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTDLQLNSH 149 (169)
Q Consensus 92 leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l~~~~~ 149 (169)
.+.+...+..-...|..|...+.............+.+++.+..+.++.|...-..++
T Consensus 34 n~~q~~tI~qq~~~~~~L~~~~~~~r~~~~~~~~~~qq~r~~~e~~~e~ik~~lk~d~ 91 (110)
T PF10828_consen 34 NKAQAQTIQQQEDANQELKAQLQQNRQAVEEQQKREQQLRQQSEERRESIKTALKDDP 91 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCc
Confidence 5556666777777788888888877777777778888999999988888876655444
No 170
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=70.52 E-value=49 Score=31.30 Aligned_cols=48 Identities=23% Similarity=0.196 Sum_probs=29.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 68 ERKQRRMISNRESARRSRMRKQKHLDELWSQVVWLRNENHQLVDKLNH 115 (169)
Q Consensus 68 eRR~RR~isNRESARRSR~RKq~~leeLe~qV~~L~~eN~~L~~~l~~ 115 (169)
+++.-|..+-+..-+-.=.-=++++.+.|..+..|+.||.+|..+.-.
T Consensus 26 ~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~ 73 (459)
T KOG0288|consen 26 EKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVR 73 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444333333333222334577888888888999998888877655
No 171
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=70.40 E-value=41 Score=24.91 Aligned_cols=49 Identities=22% Similarity=0.340 Sum_probs=29.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 68 ERKQRRMISNRESARRSRMRKQKHLDELWSQVVWLRNENHQLVDKLNHV 116 (169)
Q Consensus 68 eRR~RR~isNRESARRSR~RKq~~leeLe~qV~~L~~eN~~L~~~l~~l 116 (169)
+.+..|-++.-+.+.+.+..|...+..|..++..|+.+...+...+...
T Consensus 59 ~~k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~~~ 107 (126)
T PF13863_consen 59 EAKRERAEKRAEEEKKKKEEKEAEIKKLKAELEELKSEISKLEEKLEEY 107 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555566666666666666666666666666666655544
No 172
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=70.36 E-value=32 Score=30.49 Aligned_cols=56 Identities=21% Similarity=0.248 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 88 KQKHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTD 143 (169)
Q Consensus 88 Kq~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~ 143 (169)
..+.+.+|+.+...|..+-..|..+...+.+.-...-.+...+.-++..+......
T Consensus 62 l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~s 117 (314)
T PF04111_consen 62 LLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDS 117 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666666666666666555445555555555444444444433
No 173
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=69.89 E-value=40 Score=24.59 Aligned_cols=40 Identities=13% Similarity=0.110 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 042014 92 LDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELK 131 (169)
Q Consensus 92 leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr 131 (169)
++.|+.+|.+.-.-..-|+-++..|.++...+..|-..+.
T Consensus 6 ~ekLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q 45 (79)
T COG3074 6 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQ 45 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHH
Confidence 4455555555544444444444444444444444433333
No 174
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=69.42 E-value=11 Score=27.94 Aligned_cols=28 Identities=25% Similarity=0.410 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 88 KQKHLDELWSQVVWLRNENHQLVDKLNH 115 (169)
Q Consensus 88 Kq~~leeLe~qV~~L~~eN~~L~~~l~~ 115 (169)
|+.+++.|...+..+..+|..|..+|..
T Consensus 78 ~~~~~~~L~~~l~~l~~eN~~L~~~i~~ 105 (109)
T PF03980_consen 78 KKKEREQLNARLQELEEENEALAEEIQE 105 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666666655544
No 175
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=69.07 E-value=26 Score=24.06 Aligned_cols=14 Identities=21% Similarity=0.385 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHH
Q 042014 92 LDELWSQVVWLRNE 105 (169)
Q Consensus 92 leeLe~qV~~L~~e 105 (169)
+++||.++..+...
T Consensus 2 i~elEn~~~~~~~~ 15 (55)
T PF05377_consen 2 IDELENELPRIESS 15 (55)
T ss_pred HHHHHHHHHHHHHH
Confidence 44555555554443
No 176
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=68.82 E-value=16 Score=34.65 Aligned_cols=55 Identities=25% Similarity=0.231 Sum_probs=45.5
Q ss_pred ccHHHHHHHHHHHhHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042014 64 MIINERKQRRMISNRESARRSRMRKQK----------HLDELWSQVVWLRNENHQLVDKLNHVSG 118 (169)
Q Consensus 64 ~~~deRR~RR~isNRESARRSR~RKq~----------~leeLe~qV~~L~~eN~~L~~~l~~l~~ 118 (169)
+..+.||.|-|++--||-|+...==.. .=.+|+.+|.+|+.+|..|..+|..++.
T Consensus 250 LKrvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV~~Le~~N~sLl~qL~klQt 314 (472)
T KOG0709|consen 250 LKRVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKVEELELSNRSLLAQLKKLQT 314 (472)
T ss_pred HHHHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 478899999999999999988764442 2358999999999999999999987654
No 177
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=68.52 E-value=53 Score=32.09 Aligned_cols=46 Identities=17% Similarity=0.265 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 96 WSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQML 141 (169)
Q Consensus 96 e~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L 141 (169)
..=|.++...++.+-..++.+...+..++.|+..|+++..+|+..|
T Consensus 279 ~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~I 324 (581)
T KOG0995|consen 279 QAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQI 324 (581)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444555555555544444443
No 178
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=68.08 E-value=25 Score=24.43 Aligned_cols=31 Identities=19% Similarity=0.200 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 87 RKQKHLDELWSQVVWLRNENHQLVDKLNHVS 117 (169)
Q Consensus 87 RKq~~leeLe~qV~~L~~eN~~L~~~l~~l~ 117 (169)
.....+..++.++..++.+|..|..++..+.
T Consensus 28 ~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~ 58 (85)
T TIGR02209 28 QLNNELQKLQLEIDKLQKEWRDLQLEVAELS 58 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4567788888999999999999988888765
No 179
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=67.76 E-value=38 Score=28.30 Aligned_cols=34 Identities=24% Similarity=0.404 Sum_probs=20.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042014 112 KLNHVSGCHDKVIQENAELKVEATELRQMLTDLQ 145 (169)
Q Consensus 112 ~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l~ 145 (169)
++..|...+..+...|-.+...+..|++.|..++
T Consensus 176 ~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~ 209 (221)
T PF05700_consen 176 ELRYLEQRWKELVSKNLEIEVACEELEQEIEQLK 209 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555556666666666666666666665554
No 180
>PHA03011 hypothetical protein; Provisional
Probab=67.65 E-value=51 Score=25.69 Aligned_cols=56 Identities=21% Similarity=0.211 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042014 89 QKHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTDL 144 (169)
Q Consensus 89 q~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l 144 (169)
++.+++|..|...|-+|-.-+..+++.+..-.+.-..|=.-|++++.+|...++.+
T Consensus 63 ~e~ldeL~~qYN~L~dEYn~i~Ne~k~~~~iIQdn~d~I~~LraeIDkLK~niaN~ 118 (120)
T PHA03011 63 IEILDELIAQYNELLDEYNLIENEIKDLEIIIQDNDDEIHFLRAEIDKLKENIANL 118 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHhcc
Confidence 45678888888888888888888887776655555555566777777777666543
No 181
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=67.62 E-value=60 Score=25.73 Aligned_cols=72 Identities=17% Similarity=0.192 Sum_probs=49.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042014 74 MISNRESARRSRMRKQKHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTDLQ 145 (169)
Q Consensus 74 ~isNRESARRSR~RKq~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l~ 145 (169)
........+.-+..++..++.++..+..+..+-..|.+++.........+..+-..+.+....+.+++.+.+
T Consensus 114 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 185 (191)
T PF04156_consen 114 LKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQKELQDSREEVQELRSQLERLQENLQQLEEKIQELQ 185 (191)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555666677788888888888888888888866666666666666666666666666666666544
No 182
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=67.27 E-value=18 Score=27.91 Aligned_cols=23 Identities=30% Similarity=0.393 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 042014 122 KVIQENAELKVEATELRQMLTDL 144 (169)
Q Consensus 122 ~l~~EN~~Lr~e~~~Lr~~L~~l 144 (169)
.|+.||.-||-++.-|-.+|++.
T Consensus 83 ~LeEENNlLklKievLLDMLtet 105 (108)
T cd07429 83 QLEEENNLLKLKIEVLLDMLAET 105 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556777777777776666654
No 183
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=67.12 E-value=46 Score=32.35 Aligned_cols=57 Identities=21% Similarity=0.270 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 86 MRKQKHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLT 142 (169)
Q Consensus 86 ~RKq~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~ 142 (169)
.+.++.+++|..++..|..+-..+..++..+...+..+..|..+.+.+..++.+.+.
T Consensus 324 ~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~ 380 (594)
T PF05667_consen 324 EEQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELK 380 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778899999999999999999999999999899999999899888888887765
No 184
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=66.79 E-value=29 Score=26.25 Aligned_cols=37 Identities=24% Similarity=0.296 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 042014 102 LRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELR 138 (169)
Q Consensus 102 L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr 138 (169)
|...+..|..++..+...+..+......+.+++..|+
T Consensus 78 L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk 114 (118)
T PF13815_consen 78 LSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLK 114 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444333333333444444444444333
No 185
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=66.75 E-value=1.4e+02 Score=30.96 Aligned_cols=16 Identities=25% Similarity=0.264 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 042014 127 NAELKVEATELRQMLT 142 (169)
Q Consensus 127 N~~Lr~e~~~Lr~~L~ 142 (169)
+..|..++..|..++.
T Consensus 439 ~~ql~~eletLn~k~q 454 (1118)
T KOG1029|consen 439 KKQLQQELETLNFKLQ 454 (1118)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333344444444433
No 186
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=66.75 E-value=27 Score=23.95 Aligned_cols=26 Identities=15% Similarity=0.360 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 92 LDELWSQVVWLRNENHQLVDKLNHVS 117 (169)
Q Consensus 92 leeLe~qV~~L~~eN~~L~~~l~~l~ 117 (169)
+..++..+..++.+|..|+..++.+.
T Consensus 9 ~~~~~~~i~tvk~en~~i~~~ve~i~ 34 (55)
T PF05377_consen 9 LPRIESSINTVKKENEEISESVEKIE 34 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555554443
No 187
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=66.32 E-value=75 Score=26.37 Aligned_cols=61 Identities=15% Similarity=0.145 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042014 84 SRMRKQKHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTDL 144 (169)
Q Consensus 84 SR~RKq~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l 144 (169)
...++...+.+|+.++-+|+.+...+..+.......+.++..+-..|.+++...+.+....
T Consensus 125 ~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~F~~~ 185 (190)
T PF05266_consen 125 ELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAELEFQSV 185 (190)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667788888888888888877777777777888999999999999999998877654
No 188
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=66.30 E-value=31 Score=25.72 Aligned_cols=21 Identities=43% Similarity=0.452 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 042014 92 LDELWSQVVWLRNENHQLVDK 112 (169)
Q Consensus 92 leeLe~qV~~L~~eN~~L~~~ 112 (169)
+++|+.++..|..||..|+.+
T Consensus 51 v~~L~~e~~~l~~E~e~L~~~ 71 (87)
T PF12709_consen 51 VDELENENKALKRENEQLKKK 71 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 189
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=65.84 E-value=57 Score=30.70 Aligned_cols=67 Identities=18% Similarity=0.105 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042014 79 ESARRSRMRKQKHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTDLQ 145 (169)
Q Consensus 79 ESARRSR~RKq~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l~ 145 (169)
++|.--|.|--+--...+.+++++..|...|+.+++.......-|..||..||+-+..|..-++.+.
T Consensus 227 ee~aaERerglqteaqvek~i~EfdiEre~LRAel~ree~r~K~lKeEmeSLkeiVkdlEA~hQh~~ 293 (561)
T KOG1103|consen 227 EEAAAERERGLQTEAQVEKLIEEFDIEREFLRAELEREEKRQKMLKEEMESLKEIVKDLEADHQHLR 293 (561)
T ss_pred HHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcC
Confidence 4555566666565566677788888888889999988888888888899999988888877665543
No 190
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=65.77 E-value=20 Score=32.31 Aligned_cols=68 Identities=22% Similarity=0.266 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042014 79 ESARRSRMRKQKHLDELWSQVVWLRNENHQLV--------------DKLNHVSGCHDKVIQENAELKVEATELRQMLTDL 144 (169)
Q Consensus 79 ESARRSR~RKq~~leeLe~qV~~L~~eN~~L~--------------~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l 144 (169)
+..|.-|..=+..++.|..+...|+.....+. ..-..|..-+.....+|..|..++..|+++|.++
T Consensus 19 e~cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~ 98 (319)
T PF09789_consen 19 EKCQSERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKKLKEEVEELRQKLNEA 98 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666667777777777766665555 1223444455566677777777877777777776
Q ss_pred hh
Q 042014 145 QL 146 (169)
Q Consensus 145 ~~ 146 (169)
+-
T Consensus 99 qG 100 (319)
T PF09789_consen 99 QG 100 (319)
T ss_pred hc
Confidence 64
No 191
>PRK04863 mukB cell division protein MukB; Provisional
Probab=65.48 E-value=1.2e+02 Score=32.84 Aligned_cols=20 Identities=5% Similarity=-0.029 Sum_probs=12.0
Q ss_pred HHHHHHHHhHHHHHHHHHHH
Q 042014 69 RKQRRMISNRESARRSRMRK 88 (169)
Q Consensus 69 RR~RR~isNRESARRSR~RK 88 (169)
.+.+.+.+.++.|++.+.-+
T Consensus 321 ~rL~kLEkQaEkA~kyleL~ 340 (1486)
T PRK04863 321 EAESDLEQDYQAASDHLNLV 340 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34555666677776665543
No 192
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=65.40 E-value=50 Score=29.50 Aligned_cols=53 Identities=21% Similarity=0.199 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 91 HLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTD 143 (169)
Q Consensus 91 ~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~ 143 (169)
+++-|..++..++....++.+++......+..+-.....|+.++..|+..|..
T Consensus 113 qvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~~ 165 (302)
T PF09738_consen 113 QVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLKQ 165 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666666666666665556666677778888888888888864
No 193
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=64.85 E-value=71 Score=25.54 Aligned_cols=71 Identities=20% Similarity=0.224 Sum_probs=41.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042014 68 ERKQRRMISNRESARRSRMRKQKHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTDLQ 145 (169)
Q Consensus 68 eRR~RR~isNRESARRSR~RKq~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l~ 145 (169)
+|-..-...|++.+-.--.-+++.+..|+.++..+..+...|...+.. +..|+..|-.++...+.++..|.
T Consensus 30 EreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~-------l~sEk~~L~k~lq~~q~kv~eLE 100 (140)
T PF10473_consen 30 ERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDT-------LRSEKENLDKELQKKQEKVSELE 100 (140)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455566666666666666666666666666666666555555544 34455555555555555555544
No 194
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=64.58 E-value=33 Score=33.50 Aligned_cols=29 Identities=28% Similarity=0.423 Sum_probs=15.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042014 117 SGCHDKVIQENAELKVEATELRQMLTDLQ 145 (169)
Q Consensus 117 ~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l~ 145 (169)
...+++|++||..||.|-..|+++|.++.
T Consensus 308 e~rLq~ll~Ene~Lk~ENatLk~qL~~l~ 336 (655)
T KOG4343|consen 308 EARLQALLSENEQLKKENATLKRQLDELV 336 (655)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHh
Confidence 33444555556666666666666655544
No 195
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=64.57 E-value=44 Score=23.04 Aligned_cols=40 Identities=18% Similarity=0.169 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 042014 91 HLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVE 133 (169)
Q Consensus 91 ~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e 133 (169)
.+..|..+|.+|..+...|+..+....+ ....-|.+|--.
T Consensus 11 dVq~L~~kvdqLs~dv~~lr~~v~~ak~---EAaRAN~RlDN~ 50 (56)
T PF04728_consen 11 DVQTLNSKVDQLSSDVNALRADVQAAKE---EAARANQRLDNI 50 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhh
Confidence 3456777777777777777777665544 333446655443
No 196
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=64.55 E-value=74 Score=31.76 Aligned_cols=59 Identities=20% Similarity=0.160 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 042014 89 QKHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTDLQLN 147 (169)
Q Consensus 89 q~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l~~~ 147 (169)
...+-+|+.+-.+|.+|.+++..+++.+++.+.....|=.+|+.++...+..+.++-..
T Consensus 92 s~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~~ 150 (907)
T KOG2264|consen 92 SLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRET 150 (907)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 35678888888899999999999999999888888888899999999988888775543
No 197
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=64.35 E-value=61 Score=26.73 Aligned_cols=28 Identities=21% Similarity=0.305 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 042014 95 LWSQVVWLRNENHQLVDKLNHVSGCHDK 122 (169)
Q Consensus 95 Le~qV~~L~~eN~~L~~~l~~l~~~~~~ 122 (169)
|..|+++....|..|...+..+...+..
T Consensus 86 LReQLEq~~~~N~~L~~dl~klt~~~~~ 113 (182)
T PF15035_consen 86 LREQLEQARKANEALQEDLQKLTQDWER 113 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666677777777777766665555
No 198
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=64.33 E-value=43 Score=24.98 Aligned_cols=25 Identities=24% Similarity=0.177 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 93 DELWSQVVWLRNENHQLVDKLNHVS 117 (169)
Q Consensus 93 eeLe~qV~~L~~eN~~L~~~l~~l~ 117 (169)
..-+.+|..|..+|..|..++..|.
T Consensus 45 ~rwek~v~~L~~e~~~l~~E~e~L~ 69 (87)
T PF12709_consen 45 ARWEKKVDELENENKALKRENEQLK 69 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444443333
No 199
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=64.31 E-value=64 Score=28.51 Aligned_cols=59 Identities=20% Similarity=0.318 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042014 87 RKQKHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTDLQ 145 (169)
Q Consensus 87 RKq~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l~ 145 (169)
.+...+.+++..+..++.+...|..++..+..+...+..++.++.+++..|...|..+.
T Consensus 35 ~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~ 93 (265)
T COG3883 35 NQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELK 93 (265)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566777777777777777777777777777777777777777777777777776654
No 200
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=64.26 E-value=38 Score=33.95 Aligned_cols=53 Identities=25% Similarity=0.270 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 89 QKHLDELWSQVVWLRNENHQLVD---------------------KLNHVSGCHDKVIQENAELKVEATELRQML 141 (169)
Q Consensus 89 q~~leeLe~qV~~L~~eN~~L~~---------------------~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L 141 (169)
..++.++..++..+..||..|.. ++..+...+..++.||..||-++.-+...|
T Consensus 91 e~~l~e~~~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~kel 164 (769)
T PF05911_consen 91 EAKLAELSKRLAESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKEL 164 (769)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678888888888888887776 345566677888888888888876666555
No 201
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=63.86 E-value=50 Score=32.98 Aligned_cols=48 Identities=19% Similarity=0.154 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 042014 92 LDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQ 139 (169)
Q Consensus 92 leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~ 139 (169)
.+.|+.+...|+.+..+++.+=..+.+.|..|+.||-.|..++..|++
T Consensus 71 ~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQKqvs~Lk~ 118 (717)
T PF09730_consen 71 CEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQKQVSVLKQ 118 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444445555556666666555555553
No 202
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=63.73 E-value=58 Score=24.13 Aligned_cols=38 Identities=26% Similarity=0.417 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 042014 91 HLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEAT 135 (169)
Q Consensus 91 ~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~ 135 (169)
.|+.|..-+..|+..|..|..++. .|...|++.|.+..
T Consensus 34 ~LD~Lns~LD~LE~rnD~l~~~L~-------~LLesnrq~R~e~~ 71 (83)
T PF03670_consen 34 MLDQLNSCLDHLEQRNDHLHAQLQ-------ELLESNRQIRLEFQ 71 (83)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHH-------HHHHHHHHHHHHHH
Confidence 455666666666666655555554 45566766655543
No 203
>PRK04863 mukB cell division protein MukB; Provisional
Probab=63.56 E-value=95 Score=33.46 Aligned_cols=29 Identities=21% Similarity=0.277 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCCCCCCC
Q 042014 129 ELKVEATELRQMLTDLQLNSHYSSLKDLD 157 (169)
Q Consensus 129 ~Lr~e~~~Lr~~L~~l~~~~~~~~~~~l~ 157 (169)
.+..++..+++.+..+.....++.+++|.
T Consensus 408 elQ~el~q~qq~i~~Le~~~~~~~~~~~S 436 (1486)
T PRK04863 408 VQQTRAIQYQQAVQALERAKQLCGLPDLT 436 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 33333333444444333333333344443
No 204
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=63.11 E-value=77 Score=28.49 Aligned_cols=25 Identities=32% Similarity=0.332 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhc
Q 042014 123 VIQENAELKVEATELRQMLTDLQLN 147 (169)
Q Consensus 123 l~~EN~~Lr~e~~~Lr~~L~~l~~~ 147 (169)
+..+=.+||.+...||+.|+--+.+
T Consensus 162 llesvqRLkdEardlrqelavr~kq 186 (333)
T KOG1853|consen 162 LLESVQRLKDEARDLRQELAVRTKQ 186 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444578999999999998765544
No 205
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=62.93 E-value=56 Score=32.09 Aligned_cols=29 Identities=17% Similarity=0.272 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 89 QKHLDELWSQVVWLRNENHQLVDKLNHVS 117 (169)
Q Consensus 89 q~~leeLe~qV~~L~~eN~~L~~~l~~l~ 117 (169)
+..++.++.++..-..+-.+...++....
T Consensus 99 ~~~I~~~e~e~~~~e~~~~q~~~~~~~~~ 127 (632)
T PF14817_consen 99 DKEIESREREVSRQEASREQMLDKISDSR 127 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444433
No 206
>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]
Probab=62.76 E-value=45 Score=25.94 Aligned_cols=44 Identities=25% Similarity=0.218 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 042014 97 SQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQM 140 (169)
Q Consensus 97 ~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~ 140 (169)
.||-+|+.--..|..++..+.+....|..||..|-.=+..|-..
T Consensus 63 tQVLELQnTLdDLSqRVdsVKEEnLKLrSENQVLGQYIeNLMSa 106 (120)
T KOG3650|consen 63 TQVLELQNTLDDLSQRVDSVKEENLKLRSENQVLGQYIENLMSA 106 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhh
Confidence 34444444445555555666666666667777777666665443
No 207
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=62.46 E-value=82 Score=26.65 Aligned_cols=44 Identities=27% Similarity=0.354 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 96 WSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTD 143 (169)
Q Consensus 96 e~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~ 143 (169)
-.....+.+||..|+.++..+..+.. +...|++|..+|++.|..
T Consensus 68 ~~~~~~l~~en~~L~~e~~~l~~~~~----~~~~l~~en~~L~~lL~~ 111 (276)
T PRK13922 68 LASLFDLREENEELKKELLELESRLQ----ELEQLEAENARLRELLNL 111 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcC
Confidence 34566788888888888776654333 334778888888887654
No 208
>PF10506 MCC-bdg_PDZ: PDZ domain of MCC-2 bdg protein for Usher syndrome; InterPro: IPR019536 The entry represents a protein that has a high homology to the tumour suppressor Usher syndrome type-1C protein-binding protein 1, or known as MCC2 (mutated in colon cancer). MCC2 protein binds the first PDZ domain of AIE-75 with its C-terminal amino acids -DTFL. A possible role of MCC2 as a tumour suppressor has been put forward. The carboxyl terminus of the predicted protein was DTFL which matched the consensus motif X-S/T-X-phi (phi: hydrophobic amino acid residue) for binding to the PDZ domain of AIE-75 [, ].
Probab=62.36 E-value=53 Score=23.24 Aligned_cols=48 Identities=21% Similarity=0.250 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 94 ELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQML 141 (169)
Q Consensus 94 eLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L 141 (169)
.|...+++|+..|..|...++.-..+.+.+.....+-.+.+..||-.+
T Consensus 2 rL~~~ie~L~~~n~~L~~~le~~k~~se~Ls~~lgk~es~~~alrlal 49 (67)
T PF10506_consen 2 RLKRRIEELKSQNEMLSSTLEERKQQSEELSMDLGKYESNATALRLAL 49 (67)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 467788888888888888888887777777666655555555554443
No 209
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=62.19 E-value=94 Score=26.05 Aligned_cols=44 Identities=20% Similarity=0.231 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 042014 97 SQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQM 140 (169)
Q Consensus 97 ~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~ 140 (169)
.-...+..||..|+..+..+.+.+..|...+..|..+-..|++.
T Consensus 156 e~~~~i~~EN~~L~k~L~~l~~e~~~L~~~~~~Le~qk~~L~~e 199 (206)
T PF14988_consen 156 EFTRSIKRENQQLRKELLQLIQEAQKLEARKSQLEKQKQQLQQE 199 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445667777777777777777777777777777766666544
No 210
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=61.99 E-value=1.4e+02 Score=30.93 Aligned_cols=57 Identities=25% Similarity=0.278 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042014 88 KQKHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTDL 144 (169)
Q Consensus 88 Kq~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l 144 (169)
++.+++++..++..|......+...+..+.+.+..+..+-..++.++..++.++..+
T Consensus 437 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l 493 (1163)
T COG1196 437 LQTELEELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSLEARLDRL 493 (1163)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666666666666666666666666666666666666655443
No 211
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=61.91 E-value=92 Score=26.02 Aligned_cols=36 Identities=17% Similarity=0.231 Sum_probs=17.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042014 109 LVDKLNHVSGCHDKVIQENAELKVEATELRQMLTDL 144 (169)
Q Consensus 109 L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l 144 (169)
|..+-..+..+...+..++..|+.++..+++.-...
T Consensus 180 Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~~~~ 215 (221)
T PF05700_consen 180 LEQRWKELVSKNLEIEVACEELEQEIEQLKRKAAEL 215 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444445555555555555555554443
No 212
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=61.60 E-value=32 Score=30.11 Aligned_cols=32 Identities=28% Similarity=0.290 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHH
Q 042014 102 LRNENHQLVDKLNHVS---GCHDKVIQENAELKVE 133 (169)
Q Consensus 102 L~~eN~~L~~~l~~l~---~~~~~l~~EN~~Lr~e 133 (169)
+..+|+.|+.++..+. .....+..||.+||+.
T Consensus 71 ~~~en~~Lk~~l~~~~~~~~~~~~l~~EN~~Lr~l 105 (284)
T COG1792 71 LALENEELKKELAELEQLLEEVESLEEENKRLKEL 105 (284)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444443322 2334455555555543
No 213
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=61.47 E-value=63 Score=24.02 Aligned_cols=41 Identities=17% Similarity=0.261 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHH--HHHHHHHHHHHH
Q 042014 95 LWSQVVWLRNENHQLVDKLNHVSGCHDKV--IQENAELKVEAT 135 (169)
Q Consensus 95 Le~qV~~L~~eN~~L~~~l~~l~~~~~~l--~~EN~~Lr~e~~ 135 (169)
+.-++..++.+|..|..+.+.+....... .-+|...|..-.
T Consensus 21 ~~~k~~ka~~~~~kL~~en~qlk~Ek~~~~~qvkn~~vrqkne 63 (87)
T PF10883_consen 21 LWWKVKKAKKQNAKLQKENEQLKTEKAVAETQVKNAKVRQKNE 63 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 33444555555554444444444332222 233555555443
No 214
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=61.30 E-value=2.3e+02 Score=30.34 Aligned_cols=21 Identities=14% Similarity=0.243 Sum_probs=13.2
Q ss_pred ccccccCCCCcCCCCCcc--cCc
Q 042014 8 SGLHYLLAPSLSQFLNPI--LNF 28 (169)
Q Consensus 8 ~~~~~l~~~~~~~~~~~~--~~~ 28 (169)
.+|.-.+||.++.+.++. +||
T Consensus 347 ~~iR~~~pP~vPevssd~DTsnF 369 (1317)
T KOG0612|consen 347 DNIRESVPPVVPEVSSDDDTSNF 369 (1317)
T ss_pred hhhhhcCCCCCCcCCCCCccccc
Confidence 345566777777666663 455
No 215
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=61.06 E-value=1.1e+02 Score=26.52 Aligned_cols=23 Identities=26% Similarity=0.312 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCC
Q 042014 129 ELKVEATELRQMLTDLQLNSHYS 151 (169)
Q Consensus 129 ~Lr~e~~~Lr~~L~~l~~~~~~~ 151 (169)
.++.++..++..+....+.+|+.
T Consensus 257 ~~~~~l~~~~~~l~~~~i~AP~d 279 (423)
T TIGR01843 257 ELRERLNKARDRLQRLIIRSPVD 279 (423)
T ss_pred HHHHHHHHHHHHHhhcEEECCCC
Confidence 33444444445555555666765
No 216
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=61.04 E-value=1.5e+02 Score=28.12 Aligned_cols=42 Identities=29% Similarity=0.339 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 042014 93 DELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEA 134 (169)
Q Consensus 93 eeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~ 134 (169)
..+.+|...++++-..+..++....-.++.|..||.+|.++.
T Consensus 30 s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~ 71 (459)
T KOG0288|consen 30 SRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEER 71 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444443
No 217
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=60.79 E-value=50 Score=24.70 Aligned_cols=26 Identities=19% Similarity=0.375 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 92 LDELWSQVVWLRNENHQLVDKLNHVS 117 (169)
Q Consensus 92 leeLe~qV~~L~~eN~~L~~~l~~l~ 117 (169)
+..++.+--.+...|.+|..++..+.
T Consensus 19 L~~v~~~~l~l~~~n~el~~el~~l~ 44 (106)
T PF05837_consen 19 LSDVEKKRLRLKRRNQELAQELLELA 44 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444433
No 218
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=60.57 E-value=1.2e+02 Score=26.85 Aligned_cols=57 Identities=12% Similarity=0.271 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042014 89 QKHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTDLQ 145 (169)
Q Consensus 89 q~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l~ 145 (169)
+..++.+..++.+.+.+-..+..++..+..++..+..+-..|...+..+..++...+
T Consensus 206 ~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV~kf~ 262 (269)
T PF05278_consen 206 KEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKVEKFH 262 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 566666666777777777777777777666666666666666666666666555443
No 219
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=60.45 E-value=40 Score=24.54 Aligned_cols=26 Identities=15% Similarity=0.365 Sum_probs=14.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHH
Q 042014 109 LVDKLNHVSGCHDKVIQENAELKVEA 134 (169)
Q Consensus 109 L~~~l~~l~~~~~~l~~EN~~Lr~e~ 134 (169)
+..++..+..+-..+..+|..|+.++
T Consensus 73 l~~~i~~l~~ke~~l~~en~~L~~~~ 98 (100)
T PF01486_consen 73 LMEQIEELKKKERELEEENNQLRQKI 98 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455555555555556666665554
No 220
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=60.45 E-value=64 Score=35.51 Aligned_cols=65 Identities=20% Similarity=0.201 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 042014 82 RRSRMRKQKHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTDLQL 146 (169)
Q Consensus 82 RRSR~RKq~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l~~ 146 (169)
|..+.+.-..+.+|..+|..|..+...|...+..+..++....+++..|+.+...+.++..++-.
T Consensus 1235 Ree~~~~~~k~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~ 1299 (1822)
T KOG4674|consen 1235 REENEANLEKIQELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLE 1299 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566677788888888888888888888888888888888888888888888877776553
No 221
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=60.35 E-value=1.2e+02 Score=26.46 Aligned_cols=46 Identities=15% Similarity=0.232 Sum_probs=26.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042014 73 RMISNRESARRSRMRKQKHLDELWSQVVWLRNENHQLVDKLNHVSG 118 (169)
Q Consensus 73 R~isNRESARRSR~RKq~~leeLe~qV~~L~~eN~~L~~~l~~l~~ 118 (169)
++..-.+.+++.=.-++..+++|+.+|..++.+-..++.++..+..
T Consensus 35 k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~ 80 (239)
T COG1579 35 KAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEE 80 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555555555666666666666666666666555555443
No 222
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=60.22 E-value=18 Score=26.33 Aligned_cols=25 Identities=32% Similarity=0.396 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 042014 121 DKVIQENAELKVEATELRQMLTDLQ 145 (169)
Q Consensus 121 ~~l~~EN~~Lr~e~~~Lr~~L~~l~ 145 (169)
+.+..||.+|+.++..|...|..+.
T Consensus 3 ~ei~eEn~~Lk~eiqkle~ELq~~~ 27 (76)
T PF07334_consen 3 HEIQEENARLKEEIQKLEAELQQNK 27 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777775555554443
No 223
>PF04642 DUF601: Protein of unknown function, DUF601; InterPro: IPR006736 This family consists of several uncharacterised plant proteins which share a conserved region.
Probab=59.69 E-value=12 Score=33.34 Aligned_cols=56 Identities=20% Similarity=0.167 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 042014 91 HLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTDLQL 146 (169)
Q Consensus 91 ~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l~~ 146 (169)
+|-++|.+|..|+--|..|..++..-...|..+..--.++|+++..+..+|..|..
T Consensus 218 Rmk~aEaqvneLEvsN~DLsaKLe~gknaY~~~ieke~q~raeL~acEEkl~kmeE 273 (311)
T PF04642_consen 218 RMKEAEAQVNELEVSNIDLSAKLEPGKNAYLAAIEKENQARAELNACEEKLKKMEE 273 (311)
T ss_pred HHHHHHhhhhheecccHHHHHhhcCCcchHHHHHhhHHHHHHHHHHHHHHHhcccH
Confidence 45688999999999999999999776666666666666788888888888876653
No 224
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=59.51 E-value=1.1e+02 Score=31.97 Aligned_cols=50 Identities=24% Similarity=0.292 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh---------------HHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 93 DELWSQVVWLRNENHQLVDKLNHVSG---------------CHDKVIQENAELKVEATELRQMLT 142 (169)
Q Consensus 93 eeLe~qV~~L~~eN~~L~~~l~~l~~---------------~~~~l~~EN~~Lr~e~~~Lr~~L~ 142 (169)
+.|..+|..|+..+.+|.-.++.|.. ++.+++..|.+||+-+..||...+
T Consensus 328 esLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA 392 (1243)
T KOG0971|consen 328 ESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLRDLSA 392 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 33444455555555555555555543 357788889999998888886543
No 225
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=59.37 E-value=2e+02 Score=30.16 Aligned_cols=66 Identities=20% Similarity=0.151 Sum_probs=30.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 76 SNRESARRSRMRKQKHLDELWSQVVWLRNENHQLVDKLN---HVSGCHDKVIQENAELKVEATELRQML 141 (169)
Q Consensus 76 sNRESARRSR~RKq~~leeLe~qV~~L~~eN~~L~~~l~---~l~~~~~~l~~EN~~Lr~e~~~Lr~~L 141 (169)
+..++.+....+++..+..|+.++..+..+...+...+. .+...+..+..++..++.++.++...|
T Consensus 843 ~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~~~l~~r~~le~~L~el~~el~~l~~~~~~~~~~~ 911 (1311)
T TIGR00606 843 SKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQD 911 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344445555555555555555555555544444443332 222334444444444444444443333
No 226
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=59.32 E-value=1.2e+02 Score=29.73 Aligned_cols=47 Identities=19% Similarity=0.189 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 042014 88 KQKHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEA 134 (169)
Q Consensus 88 Kq~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~ 134 (169)
=+.++.+++.+-..+...-..|..++....+.+..+..+|..|+..+
T Consensus 278 ~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~I 324 (581)
T KOG0995|consen 278 FQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQI 324 (581)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788888888888888888888888888888888888888887654
No 227
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=59.25 E-value=62 Score=23.02 Aligned_cols=39 Identities=21% Similarity=0.245 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 042014 108 QLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTDLQL 146 (169)
Q Consensus 108 ~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l~~ 146 (169)
.....++.+...+.....+|+.|++++..|.+++..|..
T Consensus 25 ~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ 63 (70)
T PF04899_consen 25 EWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSE 63 (70)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555566666666777888888888888888877653
No 228
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=59.18 E-value=1.1e+02 Score=26.06 Aligned_cols=78 Identities=21% Similarity=0.265 Sum_probs=42.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH----------HHHHH-------
Q 042014 68 ERKQRRMISNRESARRSRMRKQK----HLDELWSQVVWLRNENHQLVDKLNHVSGCHD----------KVIQE------- 126 (169)
Q Consensus 68 eRR~RR~isNRESARRSR~RKq~----~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~----------~l~~E------- 126 (169)
-||.||-.+.+.++=.-+-+=.+ ++...-.++..|+..|+.|+.....|..-|- .|..|
T Consensus 22 ~~rLR~~E~ek~~~m~~~g~lm~evNrrlQ~hl~EIR~LKe~NqkLqedNqELRdLCCFLDddRqKgrklarEWQrFGry 101 (195)
T PF10226_consen 22 VRRLRRAEAEKMSLMVEHGRLMKEVNRRLQQHLNEIRGLKEVNQKLQEDNQELRDLCCFLDDDRQKGRKLAREWQRFGRY 101 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhHHHhHHHhHHHHHhhhH
Confidence 45777777776666433332222 2333334555666666666665555544322 22222
Q ss_pred -HHHHHHHHHHHHHHHHHhh
Q 042014 127 -NAELKVEATELRQMLTDLQ 145 (169)
Q Consensus 127 -N~~Lr~e~~~Lr~~L~~l~ 145 (169)
-..++.++....++|..+.
T Consensus 102 ta~vmr~eV~~Y~~KL~eLE 121 (195)
T PF10226_consen 102 TASVMRQEVAQYQQKLKELE 121 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 2456667777777777777
No 229
>KOG3156 consensus Uncharacterized membrane protein [Function unknown]
Probab=59.18 E-value=73 Score=27.54 Aligned_cols=42 Identities=17% Similarity=0.236 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 102 LRNENHQLVDKLNHVS-GCHDKVIQENAELKVEATELRQMLTD 143 (169)
Q Consensus 102 L~~eN~~L~~~l~~l~-~~~~~l~~EN~~Lr~e~~~Lr~~L~~ 143 (169)
++..-..+++++..+. ...+.|.+||..|+-++..++..|..
T Consensus 99 Q~~~f~kiRsel~S~e~sEF~~lr~e~EklkndlEk~ks~lr~ 141 (220)
T KOG3156|consen 99 QKVDFAKIRSELVSIERSEFANLRAENEKLKNDLEKLKSSLRH 141 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445556655554 46778888888888888888877753
No 230
>KOG3335 consensus Predicted coiled-coil protein [General function prediction only]
Probab=58.76 E-value=24 Score=29.66 Aligned_cols=43 Identities=21% Similarity=0.254 Sum_probs=26.4
Q ss_pred cHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 65 IINERKQRRMISNRESARRSRMRKQKHLDELWSQVVWLRNENHQLVDKL 113 (169)
Q Consensus 65 ~~deRR~RR~isNRESARRSR~RKq~~leeLe~qV~~L~~eN~~L~~~l 113 (169)
.-+-.|.+|...+++ ...+.++.+|+.+|..|..+.+.+.+.+
T Consensus 87 v~Ey~R~~~~e~~ke------e~~~~e~~elr~~~~~l~~~i~~~~~~~ 129 (181)
T KOG3335|consen 87 VFEYWRQARKERKKE------EKRKQEIMELRLKVEKLENAIAELTKFF 129 (181)
T ss_pred eehhHHhhhcchhhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567777776663 4455677777777777766444444443
No 231
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=58.76 E-value=75 Score=30.97 Aligned_cols=39 Identities=21% Similarity=0.232 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 042014 92 LDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAEL 130 (169)
Q Consensus 92 leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~L 130 (169)
+..+..+...+..+|..|..+|..+..+...+.-|+..|
T Consensus 221 l~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel 259 (596)
T KOG4360|consen 221 LQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEEL 259 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 344444444445555555555555555444444444433
No 232
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=58.70 E-value=18 Score=25.22 Aligned_cols=21 Identities=29% Similarity=0.289 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 042014 93 DELWSQVVWLRNENHQLVDKL 113 (169)
Q Consensus 93 eeLe~qV~~L~~eN~~L~~~l 113 (169)
+.|..++..|...|.+|..+.
T Consensus 17 evLK~~I~eL~~~n~~Le~EN 37 (59)
T PF01166_consen 17 EVLKEQIAELEERNSQLEEEN 37 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 233
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=58.62 E-value=25 Score=25.89 Aligned_cols=31 Identities=19% Similarity=0.216 Sum_probs=25.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 042014 109 LVDKLNHVSGCHDKVIQENAELKVEATELRQ 139 (169)
Q Consensus 109 L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~ 139 (169)
+...+..|...++.+..+|..|..++.++|+
T Consensus 78 ~~~~~~~L~~~l~~l~~eN~~L~~~i~~~r~ 108 (109)
T PF03980_consen 78 KKKEREQLNARLQELEEENEALAEEIQEQRK 108 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4566777777888899999999999998875
No 234
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=58.57 E-value=31 Score=25.13 Aligned_cols=23 Identities=35% Similarity=0.432 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 042014 91 HLDELWSQVVWLRNENHQLVDKL 113 (169)
Q Consensus 91 ~leeLe~qV~~L~~eN~~L~~~l 113 (169)
.++.|..++..|..+|..|+.++
T Consensus 76 ~i~~l~~ke~~l~~en~~L~~~~ 98 (100)
T PF01486_consen 76 QIEELKKKERELEEENNQLRQKI 98 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 45555566666666666665554
No 235
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=58.01 E-value=70 Score=30.53 Aligned_cols=56 Identities=11% Similarity=0.150 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042014 89 QKHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTDL 144 (169)
Q Consensus 89 q~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l 144 (169)
+..+.+-+.++++|+.+-+.|+.+++.+..+...+...=..|.+++..|+.++..+
T Consensus 68 qSALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~ 123 (475)
T PRK13729 68 QHATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKAL 123 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 44466777777777777777777777666666666666667777777777776543
No 236
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=57.93 E-value=74 Score=27.08 Aligned_cols=45 Identities=27% Similarity=0.279 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH---HHHHHHHhhh
Q 042014 102 LRNENHQLVDKLNHVSGCHDKVIQENAELKVEATE---LRQMLTDLQL 146 (169)
Q Consensus 102 L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~---Lr~~L~~l~~ 146 (169)
--.||..|...|..+.+.+..+..||..|++-+.. |...|..|.-
T Consensus 123 aL~ENe~Lh~~ie~~~eEi~~lk~en~~L~elae~~~~la~~ie~l~~ 170 (200)
T PF07412_consen 123 ALEENEKLHKEIEQKDEEIAKLKEENEELKELAEHVQYLAEVIERLTG 170 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34578889999999888999999999888876554 4445555443
No 237
>PF10482 CtIP_N: Tumour-suppressor protein CtIP N-terminal domain; InterPro: IPR019518 CtIP is predominantly a nuclear protein that complexes with both BRCA1 and the BRCA1-associated RING domain protein (BARD1). At the protein level, CtIP expression varies with cell cycle progression in a pattern identical to that of BRCA1. Thus, the steady-state levels of CtIP polypeptides, which remain low in resting cells and G1 cycling cells, increase dramatically as Dividing cells traverse the G1/S boundary. CtIP can potentially modulate the functions ascribed to BRCA1 in transcriptional regulation, DNA repair, and/or cell cycle checkpoint control []. This N-terminal domain carries a coiled-coil region and is essential for homodimerisation of the protein []. The C-terminal domain is family CtIP_C and carries functionally important CxxC and RHR motifs, absence of which lead cells to grow slowly and show hypersensitivity to genotoxins [].
Probab=57.83 E-value=92 Score=24.57 Aligned_cols=49 Identities=14% Similarity=0.210 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 042014 90 KHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELR 138 (169)
Q Consensus 90 ~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr 138 (169)
..+.+|+.+|..|..+--.=..+++.+-.+.+.+..+|..|.+-+..|-
T Consensus 14 ~ev~glq~K~~~L~~erc~Daqrleel~~knqqLreQqk~L~e~i~~LE 62 (120)
T PF10482_consen 14 KEVQGLQNKLLELKKERCLDAQRLEELFSKNQQLREQQKTLHENIKVLE 62 (120)
T ss_pred HHHHHHHHHHHHHhHHHcccHHHHHHHHcccHHHHHHHHHHHHHHHHHH
Confidence 3444555555555544333333333333333344444444444443333
No 238
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=57.82 E-value=1.1e+02 Score=25.50 Aligned_cols=60 Identities=13% Similarity=0.097 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042014 86 MRKQKHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTDLQ 145 (169)
Q Consensus 86 ~RKq~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l~ 145 (169)
.=|+.-++.|+.+|.+.+.-..+....|............--..-+.++..|...|...+
T Consensus 63 ~GKq~iveqLe~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~~l~~a~ 122 (188)
T PF05335_consen 63 AGKQQIVEQLEQEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQLETLKAALKAAQ 122 (188)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 368999999999999998888888888877776666666666666666666666665544
No 239
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=57.68 E-value=92 Score=27.59 Aligned_cols=38 Identities=24% Similarity=0.211 Sum_probs=17.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 71 QRRMISNRESARRSRMRKQKHLDELWSQVVWLRNENHQ 108 (169)
Q Consensus 71 ~RR~isNRESARRSR~RKq~~leeLe~qV~~L~~eN~~ 108 (169)
......+-+.|+..=..++..+.+++.++..|+.+...
T Consensus 223 l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~ 260 (344)
T PF12777_consen 223 LEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEE 260 (344)
T ss_dssp HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444555555555555555544433
No 240
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=57.33 E-value=50 Score=32.96 Aligned_cols=46 Identities=20% Similarity=0.164 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 97 SQVVWLRNENHQLVDKLNHVSG---CHDKVIQENAELKVEATELRQMLT 142 (169)
Q Consensus 97 ~qV~~L~~eN~~L~~~l~~l~~---~~~~l~~EN~~Lr~e~~~Lr~~L~ 142 (169)
.....|+.||-.|++.+..|.+ .+..+--|+.+|.+++.-|+..|.
T Consensus 97 ~dyselEeENislQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qle 145 (717)
T PF09730_consen 97 QDYSELEEENISLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLE 145 (717)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777788888887777765 355666666666666666665553
No 241
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=57.20 E-value=89 Score=30.43 Aligned_cols=28 Identities=18% Similarity=0.162 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCC
Q 042014 124 IQENAELKVEATELRQMLTDLQLNSHYS 151 (169)
Q Consensus 124 ~~EN~~Lr~e~~~Lr~~L~~l~~~~~~~ 151 (169)
..+=..|++|..+|+.+|..+..+.+.+
T Consensus 565 ~~~l~~L~~En~~L~~~l~~le~~~~~~ 592 (722)
T PF05557_consen 565 KSTLEALQAENEDLLARLRSLEEGNSQP 592 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTT---
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCCC
Confidence 3556788888888888998887665443
No 242
>PF09311 Rab5-bind: Rabaptin-like protein; InterPro: IPR015390 This domain is predominantly found in Rabaptin and allows for binding to the GTPase Rab5. This interaction is necessary and sufficient for Rab5-dependent recruitment of Rabaptin5 to early endosomal membranes []. ; PDB: 3NF1_A 3CEQ_B 3EDT_H 1X79_C 1TU3_F.
Probab=57.05 E-value=4 Score=33.18 Aligned_cols=50 Identities=28% Similarity=0.213 Sum_probs=1.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042014 95 LWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTDL 144 (169)
Q Consensus 95 Le~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l 144 (169)
|..+|..|..||..|+.++......+..-..+...|-.++..|+..+.-+
T Consensus 27 l~~qv~rL~qEN~~Lr~el~~tq~~lq~se~~~~~Lpee~~~Lqfl~~~~ 76 (181)
T PF09311_consen 27 LRAQVRRLCQENDWLRGELANTQQKLQESEQEVAQLPEEVKHLQFLVSIK 76 (181)
T ss_dssp HHT-----------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCcchHHHHHHHHHhc
Confidence 34466677777777777776666655555666666766666666554433
No 243
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=57.01 E-value=1e+02 Score=27.39 Aligned_cols=6 Identities=17% Similarity=1.077 Sum_probs=2.6
Q ss_pred cccccc
Q 042014 8 SGLHYL 13 (169)
Q Consensus 8 ~~~~~l 13 (169)
+|+|||
T Consensus 19 t~I~Fm 24 (312)
T smart00787 19 TGIRFM 24 (312)
T ss_pred cCceee
Confidence 344443
No 244
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=56.80 E-value=1e+02 Score=24.64 Aligned_cols=52 Identities=21% Similarity=0.324 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 92 LDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTD 143 (169)
Q Consensus 92 leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~ 143 (169)
+++....+..|...-.....+-..+...|..|..|..+|..-...+...|..
T Consensus 23 ~~~~~~~l~~l~~~~~~Vs~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L~y 74 (157)
T PF04136_consen 23 TDEILDQLDELQEQYNSVSEKTNSLHEACEQLLEEQTRLEELAEEISEKLQY 74 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 4444555556666666666666666677888888888888888888888864
No 245
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=56.62 E-value=62 Score=30.86 Aligned_cols=26 Identities=23% Similarity=0.400 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042014 120 HDKVIQENAELKVEATELRQMLTDLQ 145 (169)
Q Consensus 120 ~~~l~~EN~~Lr~e~~~Lr~~L~~l~ 145 (169)
.+++..||..||..++.|+.....+.
T Consensus 306 ~qqleeentelRs~~arlksl~dkla 331 (502)
T KOG0982|consen 306 DQQLEEENTELRSLIARLKSLADKLA 331 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45677888888888888776655443
No 246
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=56.48 E-value=81 Score=28.11 Aligned_cols=54 Identities=19% Similarity=0.279 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042014 92 LDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTDLQ 145 (169)
Q Consensus 92 leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l~ 145 (169)
.+.|...+..|+.+...|...++.+..-...+......|+.++..|++.-.++.
T Consensus 146 k~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~ 199 (312)
T smart00787 146 KEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELE 199 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 345566777888888888888888887777777888888888887777766654
No 247
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=56.39 E-value=1.3e+02 Score=25.75 Aligned_cols=50 Identities=22% Similarity=0.193 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-------HHHHHHHHHHHHHHHHHH
Q 042014 92 LDELWSQVVWLRNENHQLVDKLNHVSGCHDKV-------IQENAELKVEATELRQML 141 (169)
Q Consensus 92 leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l-------~~EN~~Lr~e~~~Lr~~L 141 (169)
...|+.+......+...|..++..+......+ ..|...|+.++...+..+
T Consensus 63 ~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~ 119 (246)
T PF00769_consen 63 KQRLEEEAEMQEEEKEQLEQELREAEAEIARLEEESERKEEEAEELQEELEEAREDE 119 (246)
T ss_dssp HHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444555555554444444 445555555555544433
No 248
>PRK10920 putative uroporphyrinogen III C-methyltransferase; Provisional
Probab=56.25 E-value=1.1e+02 Score=28.21 Aligned_cols=26 Identities=23% Similarity=0.340 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042014 119 CHDKVIQENAELKVEATELRQMLTDL 144 (169)
Q Consensus 119 ~~~~l~~EN~~Lr~e~~~Lr~~L~~l 144 (169)
....+..+...|..++..|..++..+
T Consensus 100 ~l~~~e~~~~~l~~q~~~Lq~~~~~l 125 (390)
T PRK10920 100 ALDQANRQQAALAKQLDELQQKVATI 125 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444443
No 249
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=55.89 E-value=1.9e+02 Score=32.33 Aligned_cols=57 Identities=28% Similarity=0.401 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-------HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 042014 90 KHLDELWSQVVWLRNENHQLVDKLNHVSGC-------HDKVIQENAELKVEATELRQMLTDLQL 146 (169)
Q Consensus 90 ~~leeLe~qV~~L~~eN~~L~~~l~~l~~~-------~~~l~~EN~~Lr~e~~~Lr~~L~~l~~ 146 (169)
..++++-.+++.|+.+|..|..++..+..+ .+.+......|-.++.+|+..|.++..
T Consensus 1477 ~~lee~~e~~e~l~renk~l~~ei~dl~~~~~e~~k~v~elek~~r~le~e~~elQ~aLeElE~ 1540 (1930)
T KOG0161|consen 1477 NALEELLEQLEELRRENKNLSQEIEDLEEQKDEGGKRVHELEKEKRRLEQEKEELQAALEELEA 1540 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555556666666666666655555443 455556666666677777777666553
No 250
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=55.61 E-value=2.4e+02 Score=28.57 Aligned_cols=59 Identities=19% Similarity=0.251 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042014 86 MRKQKHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTDL 144 (169)
Q Consensus 86 ~RKq~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l 144 (169)
.||+..+..|..+...+......++..|..+...+.....++..|.+++..||.+|..-
T Consensus 297 ~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k 355 (775)
T PF10174_consen 297 SRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEK 355 (775)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 45666777777777777777777777777777777777777777777777777776543
No 251
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=55.36 E-value=1.9e+02 Score=27.79 Aligned_cols=73 Identities=21% Similarity=0.250 Sum_probs=42.3
Q ss_pred HHHHHhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhHH----HHHHHHHHHHHHHHHHHHHHHHH
Q 042014 72 RRMISNRESARRSRMRKQK----HLDELWSQVVWLRNENHQLVDKLNHVSGCH----DKVIQENAELKVEATELRQMLTD 143 (169)
Q Consensus 72 RR~isNRESARRSR~RKq~----~leeLe~qV~~L~~eN~~L~~~l~~l~~~~----~~l~~EN~~Lr~e~~~Lr~~L~~ 143 (169)
+-..+|=++++.+=.+|.+ .++.+..+...++.+|..|.........++ ......+....+++.+|..+|.+
T Consensus 367 ~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQlrD 446 (493)
T KOG0804|consen 367 KQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREKEALGSKDEKITDLQEQLRD 446 (493)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455666777766666654 345667777777777777766554443332 23333444555556666666655
Q ss_pred h
Q 042014 144 L 144 (169)
Q Consensus 144 l 144 (169)
+
T Consensus 447 l 447 (493)
T KOG0804|consen 447 L 447 (493)
T ss_pred H
Confidence 3
No 252
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=55.19 E-value=97 Score=24.00 Aligned_cols=65 Identities=15% Similarity=0.177 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 79 ESARRSRMRKQKHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTD 143 (169)
Q Consensus 79 ESARRSR~RKq~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~ 143 (169)
+..--||.-.+..+..|+..++.......+|..+-..|......|.++|...-..+.+|+..|.+
T Consensus 5 ~~l~as~~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~e 69 (107)
T PF09304_consen 5 EALEASQNELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDE 69 (107)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555566666666666666666666666665556555666666665555555555555544
No 253
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=55.16 E-value=1.1e+02 Score=24.60 Aligned_cols=37 Identities=22% Similarity=0.347 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 042014 103 RNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQ 139 (169)
Q Consensus 103 ~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~ 139 (169)
..++..+..+++.+..++.....|-..|+.++..+..
T Consensus 153 ~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ 189 (192)
T PF05529_consen 153 KEENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQK 189 (192)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555556666666666666666777777666654
No 254
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=55.07 E-value=89 Score=23.56 Aligned_cols=40 Identities=18% Similarity=0.260 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042014 106 NHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTDLQ 145 (169)
Q Consensus 106 N~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l~ 145 (169)
...|...+..+.+.+..+..++..|+..+.++...+..++
T Consensus 75 q~~L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk 114 (118)
T PF13815_consen 75 QEYLSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLK 114 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555555555555555555555555555554443
No 255
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=55.02 E-value=1e+02 Score=29.85 Aligned_cols=51 Identities=18% Similarity=0.190 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 91 HLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQML 141 (169)
Q Consensus 91 ~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L 141 (169)
++++|..++............++..|..++...+.+...+.+++..+.+.+
T Consensus 421 RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i 471 (518)
T PF10212_consen 421 RIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNI 471 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444433333333333333333333333333333333333333
No 256
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=54.18 E-value=53 Score=22.73 Aligned_cols=25 Identities=20% Similarity=0.274 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 92 LDELWSQVVWLRNENHQLVDKLNHV 116 (169)
Q Consensus 92 leeLe~qV~~L~~eN~~L~~~l~~l 116 (169)
++||+.++..|+.|...+...+..-
T Consensus 23 v~EL~~RIa~L~aEI~R~~~~~~~K 47 (59)
T PF06698_consen 23 VEELEERIALLEAEIARLEAAIAKK 47 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5778888888888877777766543
No 257
>PF04375 HemX: HemX; InterPro: IPR007470 The majority of proteins in this family are annotated as uroporphyrin-III C-methyltransferase (2.1.1.107 from EC) []; however, there is no direct evidence to support this annotation for these proteins, which come from mainly pathogenic Gram-negative organisms. There is some evidence to suggest that the proteins are membrane anchored as they have a predicted N-terminal signal peptide and transmembrane domain and may be involved in haem transport [].
Probab=54.14 E-value=1.2e+02 Score=27.38 Aligned_cols=8 Identities=38% Similarity=0.236 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 042014 127 NAELKVEA 134 (169)
Q Consensus 127 N~~Lr~e~ 134 (169)
+..+.+|+
T Consensus 125 ~dW~LaEa 132 (372)
T PF04375_consen 125 DDWLLAEA 132 (372)
T ss_pred HhHHHHHH
Confidence 33343333
No 258
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=54.03 E-value=1e+02 Score=30.58 Aligned_cols=31 Identities=13% Similarity=0.207 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 042014 92 LDELWSQVVWLRNENHQLVDKLNHVSGCHDK 122 (169)
Q Consensus 92 leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~ 122 (169)
++.|+.+...|..++.+|.+++..|..++..
T Consensus 431 ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~ 461 (652)
T COG2433 431 VERLEEENSELKRELEELKREIEKLESELER 461 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444443
No 259
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=53.43 E-value=40 Score=24.24 Aligned_cols=25 Identities=24% Similarity=0.155 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 042014 94 ELWSQVVWLRNENHQLVDKLNHVSG 118 (169)
Q Consensus 94 eLe~qV~~L~~eN~~L~~~l~~l~~ 118 (169)
.|..+-..+.-|+-.|++++..+.+
T Consensus 12 ~lQnEWDa~mLE~f~LRk~l~~~rq 36 (70)
T PF08606_consen 12 TLQNEWDALMLENFTLRKQLDQTRQ 36 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444443
No 260
>PF14645 Chibby: Chibby family
Probab=53.39 E-value=73 Score=24.52 Aligned_cols=33 Identities=21% Similarity=0.123 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 042014 98 QVVWLRNENHQLVDKLNHVSGCHDKVIQENAEL 130 (169)
Q Consensus 98 qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~L 130 (169)
+..+|+.||..|+-+++.|..=+....+|-..+
T Consensus 79 ~n~~L~EENN~Lklk~elLlDMLtettae~~l~ 111 (116)
T PF14645_consen 79 ENQQLEEENNLLKLKIELLLDMLTETTAEAHLL 111 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555544333334443333
No 261
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=53.28 E-value=1e+02 Score=23.63 Aligned_cols=21 Identities=33% Similarity=0.460 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhc
Q 042014 127 NAELKVEATELRQMLTDLQLN 147 (169)
Q Consensus 127 N~~Lr~e~~~Lr~~L~~l~~~ 147 (169)
=..|..++..+..++.+|..+
T Consensus 100 k~~le~e~~~~~~r~~dL~~Q 120 (132)
T PF07926_consen 100 KEQLEKELSELEQRIEDLNEQ 120 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666544
No 262
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=53.13 E-value=19 Score=33.31 Aligned_cols=24 Identities=21% Similarity=0.176 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 93 DELWSQVVWLRNENHQLVDKLNHV 116 (169)
Q Consensus 93 eeLe~qV~~L~~eN~~L~~~l~~l 116 (169)
-.|..+=..|+.||..|+.++..|
T Consensus 35 ~aLr~EN~~LKkEN~~Lk~eVerL 58 (420)
T PF07407_consen 35 FALRMENHSLKKENNDLKIEVERL 58 (420)
T ss_pred hhHHHHhHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555444
No 263
>PRK14127 cell division protein GpsB; Provisional
Probab=52.62 E-value=47 Score=25.54 Aligned_cols=25 Identities=32% Similarity=0.395 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 042014 121 DKVIQENAELKVEATELRQMLTDLQ 145 (169)
Q Consensus 121 ~~l~~EN~~Lr~e~~~Lr~~L~~l~ 145 (169)
..|..||..|++++.+++.++....
T Consensus 47 ~~Lk~e~~~l~~~l~e~~~~~~~~~ 71 (109)
T PRK14127 47 EELQQENARLKAQVDELTKQVSVGA 71 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccc
Confidence 3445567777777777777776543
No 264
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=52.61 E-value=1e+02 Score=23.58 Aligned_cols=31 Identities=19% Similarity=0.247 Sum_probs=17.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 112 KLNHVSGCHDKVIQENAELKVEATELRQMLT 142 (169)
Q Consensus 112 ~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~ 142 (169)
.|..+.+.++.|.--|.+|-..+..|+..|.
T Consensus 41 ~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~ 71 (102)
T PF10205_consen 41 ALRKLEQENDSLTFRNQQLTKRVEVLQEELE 71 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555556666666666665555
No 265
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=52.57 E-value=48 Score=25.04 Aligned_cols=32 Identities=19% Similarity=0.236 Sum_probs=20.5
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 042014 116 VSGCHDKVIQENAELKVEATELRQMLTDLQLN 147 (169)
Q Consensus 116 l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l~~~ 147 (169)
.......+...|..|..++.+.+..|..++.+
T Consensus 42 ar~e~~~~e~k~~~le~~l~e~~~~l~~lq~q 73 (100)
T PF06428_consen 42 ARRERAALEEKNEQLEKQLKEKEALLESLQAQ 73 (100)
T ss_dssp HHHHHHHHHHHHHHHHHCTTHHCHCCCHCTSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566677777777777777666665543
No 266
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=52.29 E-value=1.4e+02 Score=25.51 Aligned_cols=75 Identities=17% Similarity=0.195 Sum_probs=50.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 68 ERKQRRMISNRESARRSRMRKQKHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLT 142 (169)
Q Consensus 68 eRR~RR~isNRESARRSR~RKq~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~ 142 (169)
.+|..++-.--|.+.+.|....++.++|+.+...|+.+-..|+-++....+.--++...-..+....++...++.
T Consensus 94 ~qk~~tl~e~~en~K~~~e~tEer~~el~kklnslkk~~e~lr~el~k~~e~dpqv~~k~~~~~K~~~eaanrwt 168 (203)
T KOG3433|consen 94 SQKKATLGESIENRKAGREETEERTDELTKKLNSLKKILESLRWELAKIQETDPQVFEKKVHLEKTMAEAANRWT 168 (203)
T ss_pred hhhHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHhhhh
Confidence 344555555566677788888888889999999999888888888887776555555544445444444444443
No 267
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=52.04 E-value=56 Score=29.55 Aligned_cols=55 Identities=27% Similarity=0.419 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----------------hHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 042014 92 LDELWSQVVWLRNENHQLVDKLNHVS----------------GCHDKVIQENAELKVEATELRQMLTDLQL 146 (169)
Q Consensus 92 leeLe~qV~~L~~eN~~L~~~l~~l~----------------~~~~~l~~EN~~Lr~e~~~Lr~~L~~l~~ 146 (169)
+.-||.++..|..++..|..+|..-. .....+.+.=..|+.++..|++.|...+.
T Consensus 180 vN~L~Kqm~~l~~eKr~Lq~~l~~~~s~~~s~~d~~~~~~~~Dt~e~~~shI~~Lr~EV~RLR~qL~~sq~ 250 (310)
T PF09755_consen 180 VNRLWKQMDKLEAEKRRLQEKLEQPVSAPPSPRDTVNVSEENDTAERLSSHIRSLRQEVSRLRQQLAASQQ 250 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccccCCCCCcchHHhhcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788888888888887776310 01133444456777777777777776554
No 268
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=51.99 E-value=1.8e+02 Score=30.48 Aligned_cols=59 Identities=8% Similarity=0.069 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 042014 88 KQKHLDELWSQVVWLRNENH-----QLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTDLQL 146 (169)
Q Consensus 88 Kq~~leeLe~qV~~L~~eN~-----~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l~~ 146 (169)
.+..+.+++.++..|..++. .+..+...+..++..+..+++.|..++..|...|..++.
T Consensus 1026 ~~~~l~el~~eI~~l~~~~~~~~~~~~~~e~~~l~~~~~~l~~~~a~l~g~~k~le~qi~~l~~ 1089 (1311)
T TIGR00606 1026 RENELKEVEEELKQHLKEMGQMQVLQMKQEHQKLEENIDLIKRNHVLALGRQKGYEKEIKHFKK 1089 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666666666665 356666777777777777777777777777777766653
No 269
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=51.90 E-value=78 Score=28.90 Aligned_cols=19 Identities=21% Similarity=0.298 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 042014 127 NAELKVEATELRQMLTDLQ 145 (169)
Q Consensus 127 N~~Lr~e~~~Lr~~L~~l~ 145 (169)
...++.++..++..|..++
T Consensus 45 ~~~~~~~~~~~~~~~~~~~ 63 (398)
T PTZ00454 45 QKNLKRELIRAKEEVKRIQ 63 (398)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3334444444444444443
No 270
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=51.73 E-value=1.4e+02 Score=27.07 Aligned_cols=58 Identities=24% Similarity=0.384 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH--HHHHHHHHHHHHHHHHhh
Q 042014 78 RESARRSRMRKQKHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQEN--AELKVEATELRQMLTDLQ 145 (169)
Q Consensus 78 RESARRSR~RKq~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN--~~Lr~e~~~Lr~~L~~l~ 145 (169)
+|+-.|-.. +...+++|..|+..++. .++.+.|++|+++= .+-|.|+..|++.|..|.
T Consensus 78 kes~~~l~d-RetEI~eLksQL~RMrE---------DWIEEECHRVEAQLALKEARkEIkQLkQvieTmr 137 (305)
T PF15290_consen 78 KESENRLHD-RETEIDELKSQLARMRE---------DWIEEECHRVEAQLALKEARKEIKQLKQVIETMR 137 (305)
T ss_pred HHHHHHHHh-hHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444443 23445555555555443 34555666666652 233445666666665544
No 271
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=51.65 E-value=91 Score=22.63 Aligned_cols=23 Identities=35% Similarity=0.460 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 042014 121 DKVIQENAELKVEATELRQMLTD 143 (169)
Q Consensus 121 ~~l~~EN~~Lr~e~~~Lr~~L~~ 143 (169)
..+..+=..|+.++..+...+..
T Consensus 70 ~~l~~e~~~lk~~i~~le~~~~~ 92 (108)
T PF02403_consen 70 EELKAEVKELKEEIKELEEQLKE 92 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555444443
No 272
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=51.38 E-value=89 Score=30.32 Aligned_cols=34 Identities=24% Similarity=0.298 Sum_probs=18.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042014 112 KLNHVSGCHDKVIQENAELKVEATELRQMLTDLQ 145 (169)
Q Consensus 112 ~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l~ 145 (169)
++..+......++.|...|+.+...|+..|..+.
T Consensus 156 e~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r 189 (546)
T KOG0977|consen 156 EINTLKRRIKALEDELKRLKAENSRLREELARAR 189 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 3334444455555666666666666666665544
No 273
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=51.07 E-value=92 Score=22.54 Aligned_cols=51 Identities=22% Similarity=0.197 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 042014 90 KHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTDLQLN 147 (169)
Q Consensus 90 ~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l~~~ 147 (169)
+++.+||.+++.-..-..+|...+ ..-...=.++++++..|-.++.+++..
T Consensus 8 ~Ri~eLE~r~AfQE~tieeLn~~l-------aEq~~~i~k~q~qlr~L~~kl~~~~~~ 58 (72)
T COG2900 8 ARIIELEIRLAFQEQTIEELNDAL-------AEQQLVIDKLQAQLRLLTEKLKDLQPS 58 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 455666666655544443333333 333334456777788888888888754
No 274
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=50.86 E-value=1.9e+02 Score=27.20 Aligned_cols=32 Identities=16% Similarity=0.171 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 042014 88 KQKHLDELWSQVVWLRNENHQLVDKLNHVSGC 119 (169)
Q Consensus 88 Kq~~leeLe~qV~~L~~eN~~L~~~l~~l~~~ 119 (169)
+.++.-|++.+-+.|...|+.|..+++.|...
T Consensus 288 ~~q~~~E~~~rqk~le~~n~~L~~rieeLk~~ 319 (411)
T KOG1318|consen 288 TLQRARELENRQKKLESTNQELALRIEELKSE 319 (411)
T ss_pred HHHHHHHHHhhhhHHHhHHHHHHHHHHHHHHH
Confidence 33445566666666666666666666666544
No 275
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=50.36 E-value=91 Score=27.63 Aligned_cols=66 Identities=24% Similarity=0.251 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 042014 67 NERKQRRMISNRESA-RRSRMRKQKHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATEL 137 (169)
Q Consensus 67 deRR~RR~isNRESA-RRSR~RKq~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~L 137 (169)
+-|-.=.-|+|+|.. +-+|.||+.-.+++ ..|+.... -..+|..|.+++..+++||....+++..+
T Consensus 125 ~yR~~LK~IR~~E~sl~p~R~~r~~l~d~I----~kLk~k~P-~s~kl~~LeqELvraEae~lvaEAqL~n~ 191 (271)
T PF13805_consen 125 QYRIHLKSIRNREESLQPSRDRRRKLQDEI----AKLKYKDP-QSPKLVVLEQELVRAEAENLVAEAQLSNI 191 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH-T-TTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHhHHHHHHH----HHHHhcCC-CChHHHHHHHHHHHHHHHhhHHHHHHHHh
Confidence 344444556777654 44555555433333 22322211 12344555555555555555555544443
No 276
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=49.77 E-value=1.1e+02 Score=29.15 Aligned_cols=56 Identities=23% Similarity=0.175 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 86 MRKQKHLDELWSQVVWLR--------------NENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQML 141 (169)
Q Consensus 86 ~RKq~~leeLe~qV~~L~--------------~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L 141 (169)
.=|++|-++|+.+++.-+ .+.+.++++++-|++++.+.--||..|-..+.+-++-|
T Consensus 389 AMKnAhrEEmeRELeKsqSvnsdveaLRrQyleelqsvqRELeVLSEQYSQKCLEnahLaqalEaerqaL 458 (593)
T KOG4807|consen 389 AMKNAHREEMERELEKSQSVNSDVEALRRQYLEELQSVQRELEVLSEQYSQKCLENAHLAQALEAERQAL 458 (593)
T ss_pred HHHHHHHHHHHHHHHhhhccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347778888777655322 23344666677777766665556655555444444333
No 277
>PF15058 Speriolin_N: Speriolin N terminus
Probab=49.72 E-value=20 Score=30.46 Aligned_cols=26 Identities=23% Similarity=0.325 Sum_probs=21.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHH
Q 042014 113 LNHVSGCHDKVIQENAELKVEATELR 138 (169)
Q Consensus 113 l~~l~~~~~~l~~EN~~Lr~e~~~Lr 138 (169)
++-+.+++.+++.||++||.++.-+|
T Consensus 7 yeGlrhqierLv~ENeeLKKlVrLir 32 (200)
T PF15058_consen 7 YEGLRHQIERLVRENEELKKLVRLIR 32 (200)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 45566777889999999999887776
No 278
>KOG0483 consensus Transcription factor HEX, contains HOX and HALZ domains [Transcription]
Probab=49.15 E-value=61 Score=27.33 Aligned_cols=46 Identities=24% Similarity=0.270 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 042014 102 LRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTDLQLN 147 (169)
Q Consensus 102 L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l~~~ 147 (169)
.+-.+.+|....+.|..++..|..+|..|..++.+|+..+......
T Consensus 103 ARwK~kqlE~d~~~Lk~~~~~l~~~~~~Lq~e~~eL~~~~~~~~~~ 148 (198)
T KOG0483|consen 103 ARWKTKQLEKDYESLKRQLESLRSENDRLQSEVQELVAELSSLKRE 148 (198)
T ss_pred ccccchhhhhhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhh
Confidence 3444455666677777777788888888888888888877765543
No 279
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=49.04 E-value=1.4e+02 Score=27.34 Aligned_cols=56 Identities=21% Similarity=0.265 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042014 89 QKHLDELWSQVVWLRNE------NHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTDL 144 (169)
Q Consensus 89 q~~leeLe~qV~~L~~e------N~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l 144 (169)
+..+++|+..+..+... .......+..+.+.+..+..+-..|++++..|...+..+
T Consensus 347 ~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 347 KEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44445555555444441 223445566666667777777778888888888777766
No 280
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=49.02 E-value=28 Score=31.60 Aligned_cols=32 Identities=16% Similarity=0.183 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHH
Q 042014 100 VWLRNENHQLVDKLNHVSGC---HDKVIQENAELK 131 (169)
Q Consensus 100 ~~L~~eN~~L~~~l~~l~~~---~~~l~~EN~~Lr 131 (169)
-.|..||.+|+.++..|..+ +..+..||..|+
T Consensus 60 ~~L~~EN~~Lk~Ena~L~~~l~~~e~l~~En~~Lr 94 (337)
T PRK14872 60 LVLETENFLLKERIALLEERLKSYEEANQTPPLFS 94 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555554444332 334455666443
No 281
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=48.80 E-value=2.7e+02 Score=28.91 Aligned_cols=7 Identities=29% Similarity=0.316 Sum_probs=2.6
Q ss_pred hHHHHHH
Q 042014 77 NRESARR 83 (169)
Q Consensus 77 NRESARR 83 (169)
|..+|..
T Consensus 417 ~~~l~~e 423 (980)
T KOG0980|consen 417 NKALAAE 423 (980)
T ss_pred HHHHHHH
Confidence 3333333
No 282
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=48.68 E-value=89 Score=21.67 Aligned_cols=32 Identities=9% Similarity=0.055 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 042014 91 HLDELWSQVVWLRNENHQLVDKLNHVSGCHDK 122 (169)
Q Consensus 91 ~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~ 122 (169)
-.-.++.++......|..|..+|..|..+...
T Consensus 26 ~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee 57 (61)
T PF08826_consen 26 ANLAFESKLQEAEKRNRELEQEIERLKKEMEE 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455666777777777777776665554433
No 283
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=48.63 E-value=90 Score=23.16 Aligned_cols=30 Identities=17% Similarity=0.144 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 042014 91 HLDELWSQVVWLRNENHQLVDKLNHVSGCH 120 (169)
Q Consensus 91 ~leeLe~qV~~L~~eN~~L~~~l~~l~~~~ 120 (169)
.++.|..+|..|...-.++...++.+....
T Consensus 25 kvdqLss~V~~L~~kvdql~~dv~~a~aaa 54 (85)
T PRK09973 25 KVNQLASNVQTLNAKIARLEQDMKALRPQI 54 (85)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666666655555433
No 284
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=48.41 E-value=1e+02 Score=28.08 Aligned_cols=22 Identities=27% Similarity=0.401 Sum_probs=13.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHH
Q 042014 68 ERKQRRMISNRESARRSRMRKQ 89 (169)
Q Consensus 68 eRR~RR~isNRESARRSR~RKq 89 (169)
.++.|+++++|...-..=+||-
T Consensus 121 ~~e~r~~lk~RI~rSEAFKRKl 142 (323)
T PF08537_consen 121 GREERRLLKDRILRSEAFKRKL 142 (323)
T ss_pred cHHHHHHHHHHHHHHHHHHHHH
Confidence 3455567777776655545543
No 285
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=48.17 E-value=82 Score=28.74 Aligned_cols=37 Identities=14% Similarity=0.206 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 042014 95 LWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELR 138 (169)
Q Consensus 95 Le~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr 138 (169)
|+.++..|+.++..|..++..+ ..|-..|++++..|+
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~ 63 (398)
T PTZ00454 27 LEKELEFLDIQEEYIKEEQKNL-------KRELIRAKEEVKRIQ 63 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHh
Confidence 4444555555555555444443 344455555555554
No 286
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=48.09 E-value=64 Score=23.09 Aligned_cols=27 Identities=26% Similarity=0.336 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 91 HLDELWSQVVWLRNENHQLVDKLNHVS 117 (169)
Q Consensus 91 ~leeLe~qV~~L~~eN~~L~~~l~~l~ 117 (169)
+++.++.+...|..||..|.-++..+.
T Consensus 43 ~l~~l~~~~~~l~~e~~~L~lE~~~l~ 69 (97)
T PF04999_consen 43 ELQQLEKEIDQLQEENERLRLEIATLS 69 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 377777788888888887777776654
No 287
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=48.03 E-value=94 Score=28.22 Aligned_cols=14 Identities=21% Similarity=0.456 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHhh
Q 042014 132 VEATELRQMLTDLQ 145 (169)
Q Consensus 132 ~e~~~Lr~~L~~l~ 145 (169)
+.+..|++.|..++
T Consensus 194 ~KIR~lq~~L~~~~ 207 (342)
T PF06632_consen 194 AKIRELQRLLASAK 207 (342)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh
Confidence 34455555555444
No 288
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=47.82 E-value=92 Score=27.98 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 042014 123 VIQENAELKVEATELRQMLTDLQ 145 (169)
Q Consensus 123 l~~EN~~Lr~e~~~Lr~~L~~l~ 145 (169)
+..+...++.++..++..+..++
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~ 49 (389)
T PRK03992 27 LEAENEKLERELERLKSELEKLK 49 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444455555555555555544
No 289
>COG3167 PilO Tfp pilus assembly protein PilO [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=47.77 E-value=76 Score=27.22 Aligned_cols=49 Identities=12% Similarity=0.108 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 042014 98 QVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTDLQLNSHY 150 (169)
Q Consensus 98 qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l~~~~~~ 150 (169)
++..++.|-.+|+..+..-..+..-| ..||+++.+++.++..|-.+-|.
T Consensus 50 el~~~~~eEe~LKs~~q~K~~~aanL----~~lr~Ql~emee~~~~llrQLPs 98 (211)
T COG3167 50 ELEELEAEEEELKSTYQQKAIQAANL----EALRAQLAEMEERFDILLRQLPS 98 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhch----HHHHHHHHHHHHHHHHHHHhCCc
Confidence 33444444444444444322222222 34778888888888777776664
No 290
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=47.74 E-value=55 Score=25.46 Aligned_cols=39 Identities=21% Similarity=0.234 Sum_probs=26.8
Q ss_pred cHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 65 IINERKQRRMISNRESARRSRMRKQKHLDELWSQVVWLRNENHQL 109 (169)
Q Consensus 65 ~~deRR~RR~isNRESARRSR~RKq~~leeLe~qV~~L~~eN~~L 109 (169)
.-|-.|..|+.++||.++ ++.+++|+.++..|+.+...+
T Consensus 93 ~~E~~Rs~~ke~~Ke~~~------~~~l~~L~~~i~~L~~~~~~~ 131 (134)
T PF07047_consen 93 IYEYWRSARKEAKKEEEL------QERLEELEERIEELEEQVEKQ 131 (134)
T ss_pred HHHHHHHHhhHHHHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 456678888877766654 356777888888777766554
No 291
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=47.68 E-value=1e+02 Score=26.87 Aligned_cols=37 Identities=24% Similarity=0.161 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHHHHHHHH
Q 042014 107 HQLVDKLNHVSGCHDKVIQ----ENAELKVEATELRQMLTD 143 (169)
Q Consensus 107 ~~L~~~l~~l~~~~~~l~~----EN~~Lr~e~~~Lr~~L~~ 143 (169)
..|..++..|.++...+.+ ....|++|..+||+.|..
T Consensus 69 ~~l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~LL~~ 109 (283)
T TIGR00219 69 NNLEYENYKLRQELLKKNQQLEILTQNLKQENVRLRELLNS 109 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3566666666666544422 222366666666665543
No 292
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=47.62 E-value=38 Score=22.92 Aligned_cols=26 Identities=19% Similarity=0.202 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 92 LDELWSQVVWLRNENHQLVDKLNHVS 117 (169)
Q Consensus 92 leeLe~qV~~L~~eN~~L~~~l~~l~ 117 (169)
-.+...++..|+.||..|+.+++...
T Consensus 24 ~~~a~~rl~~l~~EN~~Lr~eL~~~r 49 (52)
T PF12808_consen 24 RSAARKRLSKLEGENRLLRAELERLR 49 (52)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35667788999999999999887654
No 293
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=47.44 E-value=26 Score=22.83 Aligned_cols=42 Identities=31% Similarity=0.317 Sum_probs=9.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 71 QRRMISNRESARRSRMRKQKHLDELWSQVVWLRNENHQLVDKL 113 (169)
Q Consensus 71 ~RR~isNRESARRSR~RKq~~leeLe~qV~~L~~eN~~L~~~l 113 (169)
.++...|++=|+..-... ..+.+|+.++..|..||-.|+..+
T Consensus 3 ~k~~~qn~~laK~Ns~l~-~ki~~le~~~s~L~~en~~lR~~~ 44 (46)
T PF07558_consen 3 EKYSRQNRELAKRNSALS-IKIQELENEVSKLLNENVNLRELV 44 (46)
T ss_dssp ----------------------------HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhHhHHHH-hHHHHHHhHHHHHHHHHHHHHHHh
Confidence 344555555555443332 345666666666666666666543
No 294
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=47.26 E-value=1.8e+02 Score=27.28 Aligned_cols=26 Identities=23% Similarity=0.248 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042014 120 HDKVIQENAELKVEATELRQMLTDLQ 145 (169)
Q Consensus 120 ~~~l~~EN~~Lr~e~~~Lr~~L~~l~ 145 (169)
...|+.-|..|..++.+|..+....-
T Consensus 299 qk~le~~n~~L~~rieeLk~~~~~~~ 324 (411)
T KOG1318|consen 299 QKKLESTNQELALRIEELKSEAGRHG 324 (411)
T ss_pred hhHHHhHHHHHHHHHHHHHHHHHHhc
Confidence 34445556666666666655554433
No 295
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=47.22 E-value=2.6e+02 Score=26.64 Aligned_cols=8 Identities=13% Similarity=0.289 Sum_probs=2.8
Q ss_pred HHHHHHhH
Q 042014 112 KLNHVSGC 119 (169)
Q Consensus 112 ~l~~l~~~ 119 (169)
++..|.++
T Consensus 152 rl~~l~~q 159 (499)
T COG4372 152 RLKTLAEQ 159 (499)
T ss_pred HHHHHHHH
Confidence 33333333
No 296
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=47.15 E-value=1.7e+02 Score=28.09 Aligned_cols=57 Identities=19% Similarity=0.147 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042014 89 QKHLDELWSQVVWLRNENHQLVDKLNHVS-------GCHDKVIQENAELKVEATELRQMLTDLQ 145 (169)
Q Consensus 89 q~~leeLe~qV~~L~~eN~~L~~~l~~l~-------~~~~~l~~EN~~Lr~e~~~Lr~~L~~l~ 145 (169)
++.++.|+.++..|+.+-..|..++..-. .....+..|=..++.++.++-.++.++.
T Consensus 562 ~~~~~~~e~~i~~le~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~w~~l~ 625 (638)
T PRK10636 562 RKEIARLEKEMEKLNAQLAQAEEKLGDSELYDQSRKAELTACLQQQASAKSGLEECEMAWLEAQ 625 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCchhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566788888888888877777764320 1345555666677777777777776655
No 297
>PRK11546 zraP zinc resistance protein; Provisional
Probab=47.09 E-value=1.3e+02 Score=24.15 Aligned_cols=69 Identities=22% Similarity=0.158 Sum_probs=35.2
Q ss_pred ccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 64 MIINERKQRRMISNRESARRSRMRKQKHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQML 141 (169)
Q Consensus 64 ~~~deRR~RR~isNRESARRSR~RKq~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L 141 (169)
+++|....-..|-+. =.....+|..++-.-+.|-..|...-..=.+.+.+|..|...|+.++.++|-.+
T Consensus 44 LT~EQQa~~q~I~~~---------f~~~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e~r~~~ 112 (143)
T PRK11546 44 LTTEQQAAWQKIHND---------FYAQTSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQSLDELRVKR 112 (143)
T ss_pred CCHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555544444433 223333444444333333333333222223456777888888888887776544
No 298
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=47.09 E-value=1.3e+02 Score=28.86 Aligned_cols=40 Identities=25% Similarity=0.223 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042014 106 NHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTDLQ 145 (169)
Q Consensus 106 N~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l~ 145 (169)
-.++..++..+..+......+|..|.+....++..|..++
T Consensus 384 ~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~ 423 (493)
T KOG0804|consen 384 LQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELE 423 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3445555556666666666777777776666666665554
No 299
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=47.05 E-value=3.5e+02 Score=28.05 Aligned_cols=8 Identities=13% Similarity=-0.039 Sum_probs=3.0
Q ss_pred cCCCCcCC
Q 042014 40 NSQTSSFS 47 (169)
Q Consensus 40 ~~~~~~~s 47 (169)
.|.++-++
T Consensus 647 ~~~G~~tG 654 (1163)
T COG1196 647 EPSGSITG 654 (1163)
T ss_pred eCCeeeec
Confidence 34433333
No 300
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=47.00 E-value=1.4e+02 Score=23.62 Aligned_cols=59 Identities=20% Similarity=0.215 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 042014 92 LDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTDLQLNSHY 150 (169)
Q Consensus 92 leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l~~~~~~ 150 (169)
+.-...+...+..++..+..++.........+..+=..++.+...++..+..+......
T Consensus 79 L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~~ 137 (177)
T PF13870_consen 79 LTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQGGL 137 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 33444566666667777777777777777777777777777777777777776655433
No 301
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=46.94 E-value=1.2e+02 Score=28.91 Aligned_cols=56 Identities=18% Similarity=0.169 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----h-HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042014 90 KHLDELWSQVVWLRNENHQLVDKLNHVS-----G-CHDKVIQENAELKVEATELRQMLTDLQ 145 (169)
Q Consensus 90 ~~leeLe~qV~~L~~eN~~L~~~l~~l~-----~-~~~~l~~EN~~Lr~e~~~Lr~~L~~l~ 145 (169)
+.++.||.+++.|+.+-..|..++..-. . ....+..|=..++.++.++-.++.++.
T Consensus 568 ~~~~~~e~~i~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 629 (635)
T PRK11147 568 RELEQLPQLLEDLEAEIEALQAQVADADFFSQPHEQTQKVLADLADAEQELEVAFERWEELE 629 (635)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCchhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3389999999999999888888875421 1 456667777777888888888877765
No 302
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=46.89 E-value=94 Score=26.44 Aligned_cols=23 Identities=22% Similarity=0.201 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 042014 93 DELWSQVVWLRNENHQLVDKLNH 115 (169)
Q Consensus 93 eeLe~qV~~L~~eN~~L~~~l~~ 115 (169)
+-|..+|..|..+...|+..+..
T Consensus 83 ~lLrekl~~le~El~~Lr~~l~~ 105 (202)
T PF06818_consen 83 ELLREKLGQLEAELAELREELAC 105 (202)
T ss_pred HHhhhhhhhhHHHHHHHHHHHHh
Confidence 33344444444444444444444
No 303
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=46.21 E-value=81 Score=28.35 Aligned_cols=37 Identities=19% Similarity=0.132 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 042014 94 ELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAEL 130 (169)
Q Consensus 94 eLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~L 130 (169)
+++.++..|+..+..|..++..+......+..++..|
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 48 (389)
T PRK03992 12 ELEEQIRQLELKLRDLEAENEKLERELERLKSELEKL 48 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555555555555555554444444444444433
No 304
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=46.19 E-value=35 Score=32.55 Aligned_cols=48 Identities=23% Similarity=0.293 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 042014 93 DELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQM 140 (169)
Q Consensus 93 eeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~ 140 (169)
++|..+|+.|..+|..|..+++.+.-.|..+..||.-|+.--..++.+
T Consensus 46 e~l~~rv~slsq~Nkvlk~elet~k~kcki~qeenr~l~~Asv~IQar 93 (552)
T KOG2129|consen 46 ESLGARVSSLSQRNKVLKGELETLKGKCKIMQEENRPLLLASVEIQAR 93 (552)
T ss_pred HHHHHHHHHHHhhhhhhhhhHHhhhhHHHHHHhcCchhhhhhhHHhhc
Confidence 467778888888888888888888888888888888877655554433
No 305
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=46.15 E-value=1.8e+02 Score=27.84 Aligned_cols=50 Identities=26% Similarity=0.218 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 93 DELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLT 142 (169)
Q Consensus 93 eeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~ 142 (169)
+-|..|..+-.-||..|...++.-.+.+.+-..||..|.+--.+|..+|.
T Consensus 431 eVLSEQYSQKCLEnahLaqalEaerqaLRqCQrEnQELnaHNQELnnRLa 480 (593)
T KOG4807|consen 431 EVLSEQYSQKCLENAHLAQALEAERQALRQCQRENQELNAHNQELNNRLA 480 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHH
Confidence 33344555555677777777766555555555666655555555554443
No 306
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=46.08 E-value=1e+02 Score=21.71 Aligned_cols=48 Identities=23% Similarity=0.246 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 96 WSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTD 143 (169)
Q Consensus 96 e~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~ 143 (169)
..++++|+.|=..|...--.....+..|.+.|..+-.++..+..++..
T Consensus 11 De~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~ 58 (74)
T PF12329_consen 11 DEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEE 58 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555544444444455555555555555555544443
No 307
>PF10359 Fmp27_WPPW: RNA pol II promoter Fmp27 protein domain; InterPro: IPR019449 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a domain within FMP27 that contains characteristic HQR and WPPW sequence motifs.
Probab=46.04 E-value=1.3e+02 Score=28.05 Aligned_cols=60 Identities=22% Similarity=0.159 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 042014 90 KHLDELWSQVVWLRNENHQLVD--KLNHVSGCHDKVIQENAELKVEATELRQMLTDLQLNSH 149 (169)
Q Consensus 90 ~~leeLe~qV~~L~~eN~~L~~--~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l~~~~~ 149 (169)
+++.+|+.++..+......+.. .-..+..++..+..+-..|+..+.-|...|..+.....
T Consensus 170 ~Rl~~L~~qi~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~ 231 (475)
T PF10359_consen 170 ERLDELEEQIEKHEEKLGELELNPDDPELKSDIEELERHISSLKERIEFLENMLEDLEDSES 231 (475)
T ss_pred HHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 3456677777666665544332 22234456667778888888888888888888876533
No 308
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=45.85 E-value=1.9e+02 Score=24.73 Aligned_cols=70 Identities=19% Similarity=0.252 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-------HHHHHHHH-------HHHHHHHHHHHHhhhc-CCCCC
Q 042014 88 KQKHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKV-------IQENAELK-------VEATELRQMLTDLQLN-SHYSS 152 (169)
Q Consensus 88 Kq~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l-------~~EN~~Lr-------~e~~~Lr~~L~~l~~~-~~~~~ 152 (169)
...++.++..+.+.|..|-.....+|..+.+.+..| ..|....+ +++..|...+..+-.. .-+..
T Consensus 30 ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e~lgl~~ 109 (230)
T PF10146_consen 30 EEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKEYLGLEP 109 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 446777777777777777766666665554444333 33433333 3444444444444333 34444
Q ss_pred CCCCC
Q 042014 153 LKDLD 157 (169)
Q Consensus 153 ~~~l~ 157 (169)
|+.++
T Consensus 110 Lp~l~ 114 (230)
T PF10146_consen 110 LPSLE 114 (230)
T ss_pred CCccc
Confidence 54444
No 309
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=45.84 E-value=1.8e+02 Score=24.24 Aligned_cols=32 Identities=38% Similarity=0.485 Sum_probs=19.7
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 042014 80 SARRSRMRK-QKHLDELWSQVVWLRNENHQLVD 111 (169)
Q Consensus 80 SARRSR~RK-q~~leeLe~qV~~L~~eN~~L~~ 111 (169)
|||.-+.+. +..+.+|..++..|..||..|..
T Consensus 8 Sar~~ki~~L~n~l~elq~~l~~l~~ENk~Lk~ 40 (194)
T PF15619_consen 8 SARLHKIKELQNELAELQRKLQELRKENKTLKQ 40 (194)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555443 35666777777777777766554
No 310
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=45.73 E-value=2e+02 Score=26.15 Aligned_cols=23 Identities=22% Similarity=0.156 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCC
Q 042014 128 AELKVEATELRQMLTDLQLNSHY 150 (169)
Q Consensus 128 ~~Lr~e~~~Lr~~L~~l~~~~~~ 150 (169)
..|+.++.+.+..+.+|+.--|-
T Consensus 71 ~~L~~~Ik~r~~~l~DmEa~LPk 93 (330)
T PF07851_consen 71 EKLEEDIKERRCQLFDMEAFLPK 93 (330)
T ss_pred HHHHHHHHHHHhhHHHHHhhCCC
Confidence 56677777888888888844443
No 311
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=45.71 E-value=1.6e+02 Score=25.47 Aligned_cols=51 Identities=16% Similarity=0.188 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 042014 85 RMRKQKHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELR 138 (169)
Q Consensus 85 R~RKq~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr 138 (169)
|.-+|..++.+..-+...+.+..++..++..+..+.... |..+|+++....
T Consensus 158 R~~~Q~~le~k~e~l~k~~~dr~~~~~ev~~~e~kve~a---~~~~k~e~~Rf~ 208 (243)
T cd07666 158 RDQIQAELDSKVEALANKKADRDLLKEEIEKLEDKVECA---NNALKADWERWK 208 (243)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 345555555555555555555556666666555443333 666777765544
No 312
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=45.52 E-value=1.2e+02 Score=25.52 Aligned_cols=30 Identities=23% Similarity=0.309 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q 042014 123 VIQENAELKVEATELRQMLTDLQLNSHYSS 152 (169)
Q Consensus 123 l~~EN~~Lr~e~~~Lr~~L~~l~~~~~~~~ 152 (169)
++.|=.+.+.++..+..++..|.....|++
T Consensus 167 ie~~L~~v~~eIe~~~~~~~~l~~~v~~st 196 (262)
T PF14257_consen 167 IERELSRVRSEIEQLEGQLKYLDDRVDYST 196 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhceEE
Confidence 334444555666666666666666666553
No 313
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=45.46 E-value=1.5e+02 Score=25.23 Aligned_cols=55 Identities=18% Similarity=0.276 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhHHHHHHHHHHHHHHH
Q 042014 79 ESARRSRMRKQKHLDELWSQVVWLRNENHQLVDK---LNHVSGCHDKVIQENAELKVE 133 (169)
Q Consensus 79 ESARRSR~RKq~~leeLe~qV~~L~~eN~~L~~~---l~~l~~~~~~l~~EN~~Lr~e 133 (169)
|-.+|-|+--.+.+.-|-.+-.-++.-|..|+.. |..|.+-...|..||.+||.-
T Consensus 20 el~~rLR~~E~ek~~~m~~~g~lm~evNrrlQ~hl~EIR~LKe~NqkLqedNqELRdL 77 (195)
T PF10226_consen 20 ELVRRLRRAEAEKMSLMVEHGRLMKEVNRRLQQHLNEIRGLKEVNQKLQEDNQELRDL 77 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444433 333334444444444444443
No 314
>COG4238 Murein lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=45.39 E-value=1.2e+02 Score=22.26 Aligned_cols=49 Identities=20% Similarity=0.175 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 042014 90 KHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELR 138 (169)
Q Consensus 90 ~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr 138 (169)
+.+++|...|..|.....+|....+.+.........|+.+-.+++...-
T Consensus 25 aK~dqlss~vq~LnAkv~qLe~dv~a~~~~~qAAk~eaarAn~rldn~a 73 (78)
T COG4238 25 AKIDQLSSDVQTLNAKVDQLENDVNAMRSDVQAAKDEAARANQRLDNQA 73 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 3467777788888877777777777777777777777777766665543
No 315
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=45.38 E-value=1.2e+02 Score=28.72 Aligned_cols=44 Identities=11% Similarity=0.173 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 042014 91 HLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEA 134 (169)
Q Consensus 91 ~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~ 134 (169)
+.+.+...+..+......++.++..+..+++.+...-+.|+.++
T Consensus 447 ~~~k~~~~~~~l~~kr~e~~~e~~~l~pkL~~l~~~Tr~Lq~~i 490 (507)
T PF05600_consen 447 QEEKLRRKREDLEEKRQEAQEEQQELEPKLDALVERTRELQKQI 490 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444444444433
No 316
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=45.35 E-value=1.2e+02 Score=33.79 Aligned_cols=60 Identities=25% Similarity=0.253 Sum_probs=36.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 042014 77 NRESARRSRMRKQKHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATE 136 (169)
Q Consensus 77 NRESARRSR~RKq~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~ 136 (169)
-.+.+++++.-=.+++...+.++..|+++...|+..+..+.+.-..+..|...+.+.+..
T Consensus 1647 ~~e~~~~~~~e~~~q~~~aerr~~~l~~E~eeL~~~l~~~~Rarr~aE~e~~E~~e~i~~ 1706 (1930)
T KOG0161|consen 1647 ELEDAQRAREELLEQLAEAERRLAALQAELEELREKLEALERARRQAELELEELAERVNE 1706 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 456677777766777777777777777777777666666555444444444444433333
No 317
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=45.23 E-value=76 Score=29.07 Aligned_cols=47 Identities=17% Similarity=0.253 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042014 99 VVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTDLQ 145 (169)
Q Consensus 99 V~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l~ 145 (169)
|+.|+..|.+|.++|..-++...-|..-|++=-.|+..|.+-|.+|.
T Consensus 2 Vdd~QN~N~EL~kQiEIcqEENkiLdK~hRQKV~EVEKLsqTi~ELE 48 (351)
T PF07058_consen 2 VDDVQNQNQELMKQIEICQEENKILDKMHRQKVLEVEKLSQTIRELE 48 (351)
T ss_pred chhhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666555555555555555555555555555544
No 318
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=44.45 E-value=1.8e+02 Score=24.11 Aligned_cols=28 Identities=25% Similarity=0.265 Sum_probs=19.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042014 117 SGCHDKVIQENAELKVEATELRQMLTDL 144 (169)
Q Consensus 117 ~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l 144 (169)
......+..++..|..++..|.+.|.+-
T Consensus 163 ~kK~~~~~~~~~~l~~ei~~L~~klkEK 190 (194)
T PF15619_consen 163 KKKHKEAQEEVKSLQEEIQRLNQKLKEK 190 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667777778888888888777653
No 319
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=44.37 E-value=49 Score=29.14 Aligned_cols=29 Identities=31% Similarity=0.384 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042014 90 KHLDELWSQVVWLRNENHQLVDKLNHVSG 118 (169)
Q Consensus 90 ~~leeLe~qV~~L~~eN~~L~~~l~~l~~ 118 (169)
.-.+.|+.++..|+.+|..|+.+++.+..
T Consensus 32 ~l~~~l~~~~~~lr~e~~~l~~~~~~~~~ 60 (308)
T PF11382_consen 32 NLIDSLEDQFDSLREENDELRAELDALQA 60 (308)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 44667788888888888777777666544
No 320
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=44.28 E-value=1.6e+02 Score=23.51 Aligned_cols=36 Identities=19% Similarity=0.268 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhHH
Q 042014 85 RMRKQKHLDELWSQVVWLRN---ENHQLVDKLNHVSGCH 120 (169)
Q Consensus 85 R~RKq~~leeLe~qV~~L~~---eN~~L~~~l~~l~~~~ 120 (169)
+.-.+..+.+...++..|.. .|..|..++..+...+
T Consensus 29 ~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~ 67 (155)
T PF06810_consen 29 RDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKN 67 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 33445555555666666665 5555555555554433
No 321
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=43.92 E-value=1.4e+02 Score=22.61 Aligned_cols=43 Identities=16% Similarity=0.229 Sum_probs=21.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042014 76 SNRESARRSRMRKQKHLDELWSQVVWLRNENHQLVDKLNHVSG 118 (169)
Q Consensus 76 sNRESARRSR~RKq~~leeLe~qV~~L~~eN~~L~~~l~~l~~ 118 (169)
.-||.|+...-=++...+.|+.--..|..+...-..+|+.+.+
T Consensus 55 ~krE~A~E~~Y~r~~EkEqL~~Lk~kl~~e~~~~~k~i~~le~ 97 (100)
T PF04568_consen 55 GKREAAQEEQYFRKKEKEQLKKLKEKLKEEIEHHRKEIDELEK 97 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466666665555555555544444444444444444444433
No 322
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.87 E-value=1.5e+02 Score=26.04 Aligned_cols=52 Identities=27% Similarity=0.354 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 042014 92 LDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTDLQL 146 (169)
Q Consensus 92 leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l~~ 146 (169)
+..+++++..|.+|-..|..++.... ....+-++.|..++..|+-.+.....
T Consensus 59 ~~s~Q~~~~~L~~ev~~~~~~~~s~~---~~~~t~~~~ie~~l~~l~~~aG~v~V 110 (247)
T COG3879 59 LRSLQKKVNTLAAEVEDLENKLDSVR---RSVLTDDAALEDRLEKLRMLAGSVPV 110 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HhHHhHHHHHHHHHHHHHHHhccCCC
Confidence 33444445555555444444444443 22335566666677777766555443
No 323
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=43.79 E-value=1.5e+02 Score=28.49 Aligned_cols=40 Identities=23% Similarity=0.174 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 042014 90 KHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAE 129 (169)
Q Consensus 90 ~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~ 129 (169)
..+..+.++-.+.+.+|.+|++++..-.++-.++-..|.+
T Consensus 278 ek~~qy~~Ee~~~reen~rlQrkL~~e~erRealcr~lsE 317 (552)
T KOG2129|consen 278 EKLMQYRAEEVDHREENERLQRKLINELERREALCRMLSE 317 (552)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3344445566677888888888776665555444444443
No 324
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=43.73 E-value=56 Score=20.24 Aligned_cols=24 Identities=33% Similarity=0.371 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 042014 95 LWSQVVWLRNENHQLVDKLNHVSG 118 (169)
Q Consensus 95 Le~qV~~L~~eN~~L~~~l~~l~~ 118 (169)
|-.+.++|+....+|..+++++..
T Consensus 6 L~sekeqLrrr~eqLK~kLeqlrn 29 (32)
T PF02344_consen 6 LISEKEQLRRRREQLKHKLEQLRN 29 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445556666666666666665543
No 325
>PF08961 DUF1875: Domain of unknown function (DUF1875); InterPro: IPR015056 MIT can be found in the Nuclear receptor-binding factor 2, it has no known function. ; PDB: 2CRB_A.
Probab=43.62 E-value=7.7 Score=33.72 Aligned_cols=32 Identities=31% Similarity=0.393 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 042014 92 LDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAEL 130 (169)
Q Consensus 92 leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~L 130 (169)
+.+|...|..|.++|..|++++. +|.+||++|
T Consensus 131 I~dLrrlVe~L~aeNErLr~Enk-------qL~ae~arL 162 (243)
T PF08961_consen 131 IADLRRLVEFLLAENERLRRENK-------QLKAENARL 162 (243)
T ss_dssp ---------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHH
Confidence 34444455555555555544443 344455555
No 326
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=43.50 E-value=84 Score=27.48 Aligned_cols=24 Identities=33% Similarity=0.502 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 91 HLDELWSQVVWLRNENHQLVDKLN 114 (169)
Q Consensus 91 ~leeLe~qV~~L~~eN~~L~~~l~ 114 (169)
.+..+..++..|+.||.+|+.-+.
T Consensus 84 ~~~~~~~~~~~l~~EN~~Lr~lL~ 107 (284)
T COG1792 84 ELEQLLEEVESLEEENKRLKELLD 107 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC
Confidence 445555666666666666666554
No 327
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=43.39 E-value=1e+02 Score=22.91 Aligned_cols=41 Identities=29% Similarity=0.311 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 042014 98 QVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQM 140 (169)
Q Consensus 98 qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~ 140 (169)
+|...-.||..|+.++..+..=+ +..|-..|-++++.|+..
T Consensus 45 evtr~A~EN~rL~ee~rrl~~f~--~~gerE~l~~eis~L~~~ 85 (86)
T PF12711_consen 45 EVTRFAMENIRLREELRRLQSFY--VEGEREMLLQEISELRDQ 85 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HhhHHHHHHHHHHHHHhh
Confidence 44566678888888887776544 666777788888888764
No 328
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=43.38 E-value=2.2e+02 Score=29.93 Aligned_cols=51 Identities=22% Similarity=0.206 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 92 LDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLT 142 (169)
Q Consensus 92 leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~ 142 (169)
..++..++++|..+-+.+...+..+.+.+......+..|+.+...+...|.
T Consensus 443 ~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~ 493 (1041)
T KOG0243|consen 443 KKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQ 493 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666666777766666666666666666665555543
No 329
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=43.36 E-value=1e+02 Score=22.84 Aligned_cols=34 Identities=21% Similarity=0.290 Sum_probs=18.4
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042014 112 KLNHVSGCHDKVIQENAELKVEATELRQMLTDLQ 145 (169)
Q Consensus 112 ~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l~ 145 (169)
++..+.++.+.|..||..|+.|.......+...+
T Consensus 24 k~~ka~~~~~kL~~en~qlk~Ek~~~~~qvkn~~ 57 (87)
T PF10883_consen 24 KVKKAKKQNAKLQKENEQLKTEKAVAETQVKNAK 57 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555556666666666555555554443
No 330
>COG3159 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.33 E-value=1.1e+02 Score=26.37 Aligned_cols=13 Identities=23% Similarity=0.414 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHH
Q 042014 105 ENHQLVDKLNHVS 117 (169)
Q Consensus 105 eN~~L~~~l~~l~ 117 (169)
+|..+..++-.++
T Consensus 70 ~N~~lf~r~~~lq 82 (218)
T COG3159 70 ANERLFYRLHALQ 82 (218)
T ss_pred hhHHHHHHHHHHH
Confidence 4444444444333
No 331
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=43.25 E-value=1.3e+02 Score=29.29 Aligned_cols=19 Identities=21% Similarity=0.263 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 042014 119 CHDKVIQENAELKVEATEL 137 (169)
Q Consensus 119 ~~~~l~~EN~~Lr~e~~~L 137 (169)
.+..|.+||..|++.+..|
T Consensus 567 ~l~~L~~En~~L~~~l~~l 585 (722)
T PF05557_consen 567 TLEALQAENEDLLARLRSL 585 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 3677777888877777554
No 332
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=43.09 E-value=67 Score=24.96 Aligned_cols=36 Identities=19% Similarity=0.242 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 82 RRSRMRKQKHLDELWSQVVWLRNENHQLVDKLNHVS 117 (169)
Q Consensus 82 RRSR~RKq~~leeLe~qV~~L~~eN~~L~~~l~~l~ 117 (169)
.||+.+.++.-+.+..+++.|+.+...|..+++...
T Consensus 97 ~Rs~~ke~~Ke~~~~~~l~~L~~~i~~L~~~~~~~~ 132 (134)
T PF07047_consen 97 WRSARKEAKKEEELQERLEELEERIEELEEQVEKQQ 132 (134)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555555566777788888887777777766543
No 333
>PRK14160 heat shock protein GrpE; Provisional
Probab=43.04 E-value=2e+02 Score=24.46 Aligned_cols=42 Identities=19% Similarity=0.274 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 042014 92 LDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVE 133 (169)
Q Consensus 92 leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e 133 (169)
+..|+.++..|..++..|..++..+..++.++.++-.-.|..
T Consensus 56 ~~~l~~e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR 97 (211)
T PRK14160 56 IEELKDENNKLKEENKKLENELEALKDRLLRTVAEYDNYRKR 97 (211)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555556666666666666666666666665554444433
No 334
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=42.98 E-value=2.7e+02 Score=27.57 Aligned_cols=10 Identities=20% Similarity=0.474 Sum_probs=4.0
Q ss_pred HHHHHHHHhh
Q 042014 136 ELRQMLTDLQ 145 (169)
Q Consensus 136 ~Lr~~L~~l~ 145 (169)
+|+..|.+|.
T Consensus 304 kL~N~i~eLk 313 (670)
T KOG0239|consen 304 KLHNEILELK 313 (670)
T ss_pred HHHHHHHHhh
Confidence 3334444443
No 335
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=42.80 E-value=1.9e+02 Score=23.75 Aligned_cols=56 Identities=14% Similarity=0.164 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHHHHHHHH
Q 042014 87 RKQKHLDELWSQVVWLRNENHQLVDKLNHVSGCHDK-VIQENAELKVEATELRQMLT 142 (169)
Q Consensus 87 RKq~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~-l~~EN~~Lr~e~~~Lr~~L~ 142 (169)
.-...+.+|+.+...|..+-..|..++..+...... ...++.....++..|++.-.
T Consensus 124 ~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk~~~~ 180 (189)
T PF10211_consen 124 ELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKHQEEIDFLKKQNQ 180 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777777777777777777777665543 34456666666666655433
No 336
>PRK10722 hypothetical protein; Provisional
Probab=42.74 E-value=98 Score=27.21 Aligned_cols=25 Identities=16% Similarity=0.146 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 119 CHDKVIQENAELKVEATELRQMLTD 143 (169)
Q Consensus 119 ~~~~l~~EN~~Lr~e~~~Lr~~L~~ 143 (169)
+++.+..++..|..++....++|..
T Consensus 177 qlD~lrqq~~~Lq~~L~~t~rKLEn 201 (247)
T PRK10722 177 ELDALRQQQQRLQYQLELTTRKLEN 201 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444443
No 337
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=42.60 E-value=1.1e+02 Score=23.87 Aligned_cols=37 Identities=8% Similarity=0.046 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 042014 94 ELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAEL 130 (169)
Q Consensus 94 eLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~L 130 (169)
||.++++.|+.|+..+..-...|...+.-|+......
T Consensus 29 EmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkqE 65 (134)
T PF08232_consen 29 EMKARIAFLEGERRGQENLKKDLKRRIKMLEYALKQE 65 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555444444444444444444433333
No 338
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=42.50 E-value=3.1e+02 Score=26.16 Aligned_cols=46 Identities=15% Similarity=0.193 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 042014 86 MRKQKHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELK 131 (169)
Q Consensus 86 ~RKq~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr 131 (169)
.+-++.+..+..|...|+.+...|..+-..+..+.+.|.++-..|.
T Consensus 133 ~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ 178 (499)
T COG4372 133 AKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQ 178 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555555555555555555555555555555554444
No 339
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=42.48 E-value=2.2e+02 Score=24.36 Aligned_cols=11 Identities=36% Similarity=0.084 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 042014 94 ELWSQVVWLRN 104 (169)
Q Consensus 94 eLe~qV~~L~~ 104 (169)
+|+++++....
T Consensus 85 eLe~~L~~~~q 95 (203)
T KOG3433|consen 85 ELESQLATGSQ 95 (203)
T ss_pred HHHHHHHHhhh
Confidence 33333333333
No 340
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=42.33 E-value=87 Score=30.13 Aligned_cols=72 Identities=19% Similarity=0.244 Sum_probs=41.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH--------HHHHHHHHHHHHHHHHHHHH
Q 042014 70 KQRRMISNRESARRSRMRKQKHLDELWSQVVWLRNENHQLVDKLNHVSGCHD--------KVIQENAELKVEATELRQML 141 (169)
Q Consensus 70 R~RR~isNRESARRSR~RKq~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~--------~l~~EN~~Lr~e~~~Lr~~L 141 (169)
+.++|.+.=|.-+| -.+.+.+|..+++.-+.|+....-+--.|..... .--.||..++.|+..||..|
T Consensus 243 hv~km~kdle~Lq~----aEqsl~dlQk~Lekar~e~rnvavek~~lerkl~ea~rl~elreg~e~e~~rkelE~lR~~L 318 (575)
T KOG4403|consen 243 HVNKMMKDLEGLQR----AEQSLEDLQKRLEKAREEQRNVAVEKLDLERKLDEAPRLSELREGVENETSRKELEQLRVAL 318 (575)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHH
Confidence 45555555554433 3456667777777666665543333333332222 11357888888999999888
Q ss_pred HHhh
Q 042014 142 TDLQ 145 (169)
Q Consensus 142 ~~l~ 145 (169)
....
T Consensus 319 ~kAE 322 (575)
T KOG4403|consen 319 EKAE 322 (575)
T ss_pred HHHH
Confidence 7654
No 341
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=42.29 E-value=1.6e+02 Score=23.61 Aligned_cols=8 Identities=25% Similarity=0.381 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 042014 121 DKVIQENA 128 (169)
Q Consensus 121 ~~l~~EN~ 128 (169)
..+..++.
T Consensus 125 ~~l~~~~q 132 (145)
T COG1730 125 EQLEQEAQ 132 (145)
T ss_pred HHHHHHHH
Confidence 33333333
No 342
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=42.26 E-value=4.7e+02 Score=28.21 Aligned_cols=18 Identities=22% Similarity=0.150 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 042014 98 QVVWLRNENHQLVDKLNH 115 (169)
Q Consensus 98 qV~~L~~eN~~L~~~l~~ 115 (169)
+...|..++..+..++..
T Consensus 509 ~~~~l~~~~~~~~eele~ 526 (1317)
T KOG0612|consen 509 KKRKLEALVRQLEEELED 526 (1317)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 343
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=42.11 E-value=2.7e+02 Score=28.46 Aligned_cols=40 Identities=18% Similarity=0.175 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 042014 91 HLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAEL 130 (169)
Q Consensus 91 ~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~L 130 (169)
+++.-..+...++.+|..++.++..+...+.++..|-+.+
T Consensus 719 ~le~e~nr~~~~~~e~~~~qeE~~~l~~r~~~le~e~r~~ 758 (961)
T KOG4673|consen 719 SLEKERNRAAENRQEYLAAQEEADTLEGRANQLEVEIREL 758 (961)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444443333
No 344
>PF08912 Rho_Binding: Rho Binding; InterPro: IPR015008 Rho is responsible for the recognition and binding of Rho binding domain-containing proteins (such as ROCK) to Rho, resulting in activation of the GTPase which in turn modulates the phosphorylation of various signalling proteins. This domain is within an amphipathic alpha-helical coiled-coil and interacts with Rho through predominantly hydrophobic interactions []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0000910 cytokinesis, 0006468 protein phosphorylation; PDB: 1UIX_A 1S1C_X.
Probab=41.92 E-value=1.3e+02 Score=21.58 Aligned_cols=33 Identities=27% Similarity=0.282 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 042014 95 LWSQVVWLRNENHQLVDKLNHVSGCHDKVIQEN 127 (169)
Q Consensus 95 Le~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN 127 (169)
|...|..|..|+..|..++..+.+.+..+..+-
T Consensus 1 L~kdv~~l~~EkeeL~~klk~~qeel~~~k~~~ 33 (69)
T PF08912_consen 1 LTKDVANLAKEKEELNNKLKKQQEELQKLKEEE 33 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777888888888888777777666554444
No 345
>PF14645 Chibby: Chibby family
Probab=41.90 E-value=84 Score=24.19 Aligned_cols=19 Identities=42% Similarity=0.410 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 042014 124 IQENAELKVEATELRQMLT 142 (169)
Q Consensus 124 ~~EN~~Lr~e~~~Lr~~L~ 142 (169)
..||.-||-++.-|=.+|+
T Consensus 84 ~EENN~Lklk~elLlDMLt 102 (116)
T PF14645_consen 84 EEENNLLKLKIELLLDMLT 102 (116)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443
No 346
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=41.87 E-value=1.7e+02 Score=23.77 Aligned_cols=49 Identities=20% Similarity=0.197 Sum_probs=31.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 042014 74 MISNRESARRSRMRKQKHLDELWSQVVWLRNENHQLVDKLNHVSGCHDK 122 (169)
Q Consensus 74 ~isNRESARRSR~RKq~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~ 122 (169)
+..=.|+||..-.+-++.++++..+|...-.+...|.........++..
T Consensus 18 If~I~E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~e 66 (159)
T PF05384_consen 18 IFEIAEQARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAE 66 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334677787777888888888877776666666665555544444433
No 347
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=41.80 E-value=1.7e+02 Score=28.56 Aligned_cols=22 Identities=32% Similarity=0.318 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 042014 120 HDKVIQENAELKVEATELRQML 141 (169)
Q Consensus 120 ~~~l~~EN~~Lr~e~~~Lr~~L 141 (169)
...+.+|-..|..+-+++-+.+
T Consensus 270 ~~ql~aE~~EleDkyAE~m~~~ 291 (596)
T KOG4360|consen 270 QRQLTAELEELEDKYAECMQML 291 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 348
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=41.54 E-value=2.2e+02 Score=24.15 Aligned_cols=32 Identities=9% Similarity=0.079 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 042014 94 ELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQ 125 (169)
Q Consensus 94 eLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~ 125 (169)
....++..|..+....+.+|..|..+++.|..
T Consensus 151 q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~ 182 (192)
T PF11180_consen 151 QARQEAQALEAERRAAQAQLRQLQRQVRQLQR 182 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444433
No 349
>smart00340 HALZ homeobox associated leucin zipper.
Probab=41.46 E-value=72 Score=21.05 Aligned_cols=26 Identities=19% Similarity=0.181 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 92 LDELWSQVVWLRNENHQLVDKLNHVS 117 (169)
Q Consensus 92 leeLe~qV~~L~~eN~~L~~~l~~l~ 117 (169)
.+-|..=.+.|..||..|+.++..|.
T Consensus 7 Ce~LKrcce~LteeNrRL~ke~~eLr 32 (44)
T smart00340 7 CELLKRCCESLTEENRRLQKEVQELR 32 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667788888888888887664
No 350
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=41.34 E-value=1.7e+02 Score=22.85 Aligned_cols=66 Identities=21% Similarity=0.255 Sum_probs=47.8
Q ss_pred HHHHhhhccHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 042014 57 EEQQQQSMIINERKQRRMIS-NRESARRSRMRKQKHLDELWSQVVWLRNENHQLVDKLNHVSGCHDK 122 (169)
Q Consensus 57 ~eq~~~~~~~deRR~RR~is-NRESARRSR~RKq~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~ 122 (169)
-.|++..+..+-+..|+=++ -=.-+--||..=..++|||..+|..|+..-..|...+..++.-.+.
T Consensus 6 ~~~q~~~l~~~v~~lRed~r~SEdrsa~SRa~mhrRlDElV~Rv~~lEs~~~~lk~dVsemKpVT~d 72 (112)
T PF07439_consen 6 LHQQLGTLNAEVKELREDIRRSEDRSAASRASMHRRLDELVERVTTLESSVSTLKADVSEMKPVTDD 72 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHhhHHhccchHHH
Confidence 45666666677777776443 1223456788888999999999999998888888888877654333
No 351
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=41.34 E-value=1.8e+02 Score=23.19 Aligned_cols=36 Identities=19% Similarity=0.163 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 042014 97 SQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKV 132 (169)
Q Consensus 97 ~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~ 132 (169)
..+..++.++..|...+.....+...|..-|..+..
T Consensus 73 ~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~ 108 (140)
T PF10473_consen 73 LELDTLRSEKENLDKELQKKQEKVSELESLNSSLEN 108 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 333344444444444444444444444444444433
No 352
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=41.24 E-value=1.1e+02 Score=24.36 Aligned_cols=15 Identities=20% Similarity=0.226 Sum_probs=5.8
Q ss_pred HHhHHHHHHHHHHHH
Q 042014 116 VSGCHDKVIQENAEL 130 (169)
Q Consensus 116 l~~~~~~l~~EN~~L 130 (169)
|.++++.+...|..|
T Consensus 113 Lr~~L~~~~~~n~~L 127 (131)
T PF04859_consen 113 LREKLDELNRANKSL 127 (131)
T ss_pred HHHHHHHHHHHHHHh
Confidence 333333334444433
No 353
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=40.60 E-value=25 Score=33.59 Aligned_cols=25 Identities=20% Similarity=0.387 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 91 HLDELWSQVVWLRNENHQLVDKLNH 115 (169)
Q Consensus 91 ~leeLe~qV~~L~~eN~~L~~~l~~ 115 (169)
++++|++|+++|+++...|.+++..
T Consensus 32 kie~L~kql~~Lk~q~~~l~~~v~k 56 (489)
T PF11853_consen 32 KIEALKKQLEELKAQQDDLNDRVDK 56 (489)
T ss_pred HHHHHHHHHHHHHHhhcccccccch
Confidence 5666666666666665555554443
No 354
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=40.59 E-value=99 Score=28.14 Aligned_cols=25 Identities=24% Similarity=0.073 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 119 CHDKVIQENAELKVEATELRQMLTD 143 (169)
Q Consensus 119 ~~~~l~~EN~~Lr~e~~~Lr~~L~~ 143 (169)
.+..+..||.+|++|...|+.++..
T Consensus 58 ~y~~L~~EN~~Lk~Ena~L~~~l~~ 82 (337)
T PRK14872 58 HALVLETENFLLKERIALLEERLKS 82 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666666666555554443
No 355
>PRK15396 murein lipoprotein; Provisional
Probab=40.58 E-value=1.4e+02 Score=21.66 Aligned_cols=30 Identities=27% Similarity=0.282 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 042014 91 HLDELWSQVVWLRNENHQLVDKLNHVSGCH 120 (169)
Q Consensus 91 ~leeLe~qV~~L~~eN~~L~~~l~~l~~~~ 120 (169)
.++.|..+|..|..+-.+|...++.+....
T Consensus 26 kvd~LssqV~~L~~kvdql~~dv~~~~~~~ 55 (78)
T PRK15396 26 KIDQLSSDVQTLNAKVDQLSNDVNAMRSDV 55 (78)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666655554433
No 356
>PRK11546 zraP zinc resistance protein; Provisional
Probab=40.48 E-value=1.9e+02 Score=23.23 Aligned_cols=30 Identities=20% Similarity=0.279 Sum_probs=16.8
Q ss_pred HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Q 042014 86 MRKQKHLDELW-------SQVVWLRNENHQLVDKLNH 115 (169)
Q Consensus 86 ~RKq~~leeLe-------~qV~~L~~eN~~L~~~l~~ 115 (169)
.=|+..+..|- .+|..|..|...|+.++..
T Consensus 71 ~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e 107 (143)
T PRK11546 71 VSKRYEYNALLTANPPDSSKINAVAKEMENLRQSLDE 107 (143)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 33555565553 3466666666666665543
No 357
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=40.34 E-value=3.1e+02 Score=25.51 Aligned_cols=47 Identities=13% Similarity=0.004 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 042014 100 VWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTDLQL 146 (169)
Q Consensus 100 ~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l~~ 146 (169)
..+..-...+..++..+..+...+..+=..|++++.+|++.|..+..
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~ 173 (525)
T TIGR02231 127 KEWFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNELNALLT 173 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 44555555566666666666667777777777778888877777654
No 358
>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=40.13 E-value=2e+02 Score=23.38 Aligned_cols=50 Identities=16% Similarity=-0.007 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 042014 90 KHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQ 139 (169)
Q Consensus 90 ~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~ 139 (169)
.+.+.|..++..+..+...|...+.....++..+...=..+...+...+.
T Consensus 79 ~~r~~l~~~~~~~e~~~a~l~~~l~~~~~~ia~~~raIarn~a~id~~~e 128 (158)
T PF09486_consen 79 RYRDVLEERVRAAEAELAALRQALRAAEDEIAATRRAIARNDARIDVCRE 128 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 34444444444444444444444444443333333333333333333333
No 359
>PF13118 DUF3972: Protein of unknown function (DUF3972)
Probab=40.07 E-value=1.5e+02 Score=23.45 Aligned_cols=43 Identities=23% Similarity=0.156 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 042014 90 KHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKV 132 (169)
Q Consensus 90 ~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~ 132 (169)
+-++....-+..|+.||.-|+..+-.+++-+..=...=..|++
T Consensus 78 Kvl~aKdETI~~lk~EN~fLKeAl~s~QE~y~ed~kTI~~L~~ 120 (126)
T PF13118_consen 78 KVLDAKDETIEALKNENRFLKEALYSMQELYEEDRKTIELLRE 120 (126)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3455556677888888888888887777655444333333333
No 360
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.95 E-value=1.4e+02 Score=29.61 Aligned_cols=51 Identities=25% Similarity=0.290 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042014 95 LWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTDLQ 145 (169)
Q Consensus 95 Le~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l~ 145 (169)
.+.+|.+|+.+...|..++.++.+...+...=--.|-++...|.+++.+|+
T Consensus 6 aeq~ve~lr~eierLT~el~q~t~e~~qaAeyGL~lLeeK~~Lkqq~eEle 56 (772)
T KOG0999|consen 6 AEQEVEKLRQEIERLTEELEQTTEEKIQAAEYGLELLEEKEDLKQQLEELE 56 (772)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 361
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=39.78 E-value=1.4e+02 Score=23.16 Aligned_cols=54 Identities=20% Similarity=0.216 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 042014 96 WSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTDLQLNSH 149 (169)
Q Consensus 96 e~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l~~~~~ 149 (169)
..++..++..+..|..++=.+......+..-+..|..+=..|+.+|..|.....
T Consensus 71 ~~rl~~~r~r~~~L~hR~l~v~~~~eilr~~g~~l~~eEe~L~~~le~l~~~l~ 124 (141)
T PF13874_consen 71 SARLEEARRRHQELSHRLLRVLRKQEILRNRGYALSPEEEELRKRLEALEAQLN 124 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHc
Confidence 344444444444444444444444444444555565566666666666654433
No 362
>PRK05892 nucleoside diphosphate kinase regulator; Provisional
Probab=39.35 E-value=2e+02 Score=23.02 Aligned_cols=58 Identities=21% Similarity=0.128 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhH--------HHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 042014 90 KHLDELWSQVVWLRNENHQLVDKLNHVSGC--------HDKVIQENAELKVEATELRQMLTDLQLN 147 (169)
Q Consensus 90 ~~leeLe~qV~~L~~eN~~L~~~l~~l~~~--------~~~l~~EN~~Lr~e~~~Lr~~L~~l~~~ 147 (169)
+-++.|+.++.+|+.+-..+...+...... ++....+-..+...+..|..+|...++-
T Consensus 11 eg~~~L~~EL~~L~~~r~~i~~~i~~Ar~~GDlsENaey~aak~~q~~~e~RI~~L~~~L~~A~ii 76 (158)
T PRK05892 11 AARDHLEAELARLRARRDRLAVEVNDRGMIGDHGDQAEAIQRADELARLDDRINELDRRLRTGPTP 76 (158)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHhCEEe
Confidence 446677888888877666666666444332 4555556667777888888888876653
No 363
>KOG0483 consensus Transcription factor HEX, contains HOX and HALZ domains [Transcription]
Probab=38.73 E-value=64 Score=27.19 Aligned_cols=45 Identities=20% Similarity=0.293 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 99 VVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTD 143 (169)
Q Consensus 99 V~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~ 143 (169)
..+|+.+-..|+..+..|......+..|+..|++++..+......
T Consensus 107 ~kqlE~d~~~Lk~~~~~l~~~~~~Lq~e~~eL~~~~~~~~~~~~~ 151 (198)
T KOG0483|consen 107 TKQLEKDYESLKRQLESLRSENDRLQSEVQELVAELSSLKREMQK 151 (198)
T ss_pred chhhhhhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhcc
Confidence 355666667777777888888888888999999998888776655
No 364
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=38.43 E-value=1.5e+02 Score=21.32 Aligned_cols=25 Identities=24% Similarity=0.130 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhH
Q 042014 95 LWSQVVWLRNENHQLVDKLNHVSGC 119 (169)
Q Consensus 95 Le~qV~~L~~eN~~L~~~l~~l~~~ 119 (169)
+--+.=.|+......+.++....-+
T Consensus 20 ~mLE~f~LRk~l~~~rqELs~aLYq 44 (70)
T PF08606_consen 20 LMLENFTLRKQLDQTRQELSHALYQ 44 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444443333
No 365
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=38.30 E-value=1.7e+02 Score=21.78 Aligned_cols=45 Identities=18% Similarity=0.104 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 98 QVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLT 142 (169)
Q Consensus 98 qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~ 142 (169)
+|.+|..+.+.|..++..+....+.+...=..-++|..+.-++|-
T Consensus 25 kvdqLss~V~~L~~kvdql~~dv~~a~aaa~aAk~EA~RAN~RiD 69 (85)
T PRK09973 25 KVNQLASNVQTLNAKIARLEQDMKALRPQIYAAKSEANRANTRLD 69 (85)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 566666666666666666665555555544444455555555543
No 366
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=38.21 E-value=3.1e+02 Score=24.97 Aligned_cols=30 Identities=13% Similarity=0.080 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCCC
Q 042014 122 KVIQENAELKVEATELRQMLTDLQLNSHYS 151 (169)
Q Consensus 122 ~l~~EN~~Lr~e~~~Lr~~L~~l~~~~~~~ 151 (169)
.+..+=..+++++..++..|....+.+|+.
T Consensus 295 ~~~~~l~~~~~~l~~a~~~l~~~~I~AP~d 324 (457)
T TIGR01000 295 DLNQKLLELESKIKSLKEDSQKGVIKAPED 324 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCEEECCCC
Confidence 333333444444555555555566667775
No 367
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=37.83 E-value=5.2e+02 Score=27.36 Aligned_cols=49 Identities=20% Similarity=0.240 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 042014 99 VVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTDLQLN 147 (169)
Q Consensus 99 V~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l~~~ 147 (169)
+..+-..|..|..++....++.+.+..+|.+.+..+..+++.+..++.+
T Consensus 260 i~~~~~~N~~Ls~~L~~~t~~~n~l~~~~~~~~~~l~~~~q~~~~i~eQ 308 (1109)
T PRK10929 260 IVAQFKINRELSQALNQQAQRMDLIASQQRQAASQTLQVRQALNTLREQ 308 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444466999999999999999999999999888888888777765543
No 368
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=37.64 E-value=86 Score=23.81 Aligned_cols=16 Identities=19% Similarity=0.160 Sum_probs=7.7
Q ss_pred HHHHHHHHhHHHHHHH
Q 042014 69 RKQRRMISNRESARRS 84 (169)
Q Consensus 69 RR~RR~isNRESARRS 84 (169)
++.+|.+-.+..+=..
T Consensus 21 ~~~~~~l~~~l~~~l~ 36 (117)
T COG2919 21 VRRRRILTLVLLALLA 36 (117)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445555555554433
No 369
>PF08961 DUF1875: Domain of unknown function (DUF1875); InterPro: IPR015056 MIT can be found in the Nuclear receptor-binding factor 2, it has no known function. ; PDB: 2CRB_A.
Probab=37.57 E-value=11 Score=32.81 Aligned_cols=42 Identities=21% Similarity=0.363 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 042014 89 QKHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATEL 137 (169)
Q Consensus 89 q~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~L 137 (169)
|..++|...++.+|+. .+..|..+...|..||.+|+++.+.|
T Consensus 121 KT~IEEQ~T~I~dLrr-------lVe~L~aeNErLr~EnkqL~ae~arL 162 (243)
T PF08961_consen 121 KTRIEEQATKIADLRR-------LVEFLLAENERLRRENKQLKAENARL 162 (243)
T ss_dssp -------------------------------------------------
T ss_pred hhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555554 44444445556677888888887777
No 370
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=37.54 E-value=4.3e+02 Score=26.60 Aligned_cols=56 Identities=13% Similarity=0.047 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 042014 95 LWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTDLQLNSHY 150 (169)
Q Consensus 95 Le~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l~~~~~~ 150 (169)
|..++....+.-..+...+..+...+.....-+.+|.+++..|+..|..++.....
T Consensus 571 Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~k~~~~~ 626 (698)
T KOG0978|consen 571 LQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLERLKKEESG 626 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 33333333333333333333333334444445677777778888888777766553
No 371
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=37.38 E-value=35 Score=22.66 Aligned_cols=15 Identities=27% Similarity=0.255 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHH
Q 042014 88 KQKHLDELWSQVVWL 102 (169)
Q Consensus 88 Kq~~leeLe~qV~~L 102 (169)
.++.++.++.+++.|
T Consensus 53 ~~k~l~~le~e~~~l 67 (68)
T PF06305_consen 53 LRKELKKLEKELEQL 67 (68)
T ss_pred HHHHHHHHHHHHHhc
Confidence 344555555555544
No 372
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=37.36 E-value=2e+02 Score=27.67 Aligned_cols=10 Identities=10% Similarity=0.129 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 042014 92 LDELWSQVVW 101 (169)
Q Consensus 92 leeLe~qV~~ 101 (169)
+++|+.++..
T Consensus 211 ~~~le~el~~ 220 (650)
T TIGR03185 211 IEALEAELKE 220 (650)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 373
>PRK11281 hypothetical protein; Provisional
Probab=37.19 E-value=4.8e+02 Score=27.57 Aligned_cols=47 Identities=19% Similarity=0.165 Sum_probs=29.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 68 ERKQRRMISNRESARRSRMRKQ-----------KHLDELWSQVVWLRNENHQLVDKLN 114 (169)
Q Consensus 68 eRR~RR~isNRESARRSR~RKq-----------~~leeLe~qV~~L~~eN~~L~~~l~ 114 (169)
||.+.++-.|+.-.+.-+.+-+ .+...|+.+...+..+|..++.++.
T Consensus 159 ERAQ~~lsea~~RlqeI~~~L~~~~~~~~~l~~~~~~~l~ae~~~l~~~~~~~~~~l~ 216 (1113)
T PRK11281 159 ERAQAALYANSQRLQQIRNLLKGGKVGGKALRPSQRVLLQAEQALLNAQNDLQRKSLE 216 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5566677666665555554442 3456667777777777766665544
No 374
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=37.13 E-value=4.8e+02 Score=26.82 Aligned_cols=75 Identities=21% Similarity=0.256 Sum_probs=42.4
Q ss_pred cHHHHH-HHHHHHhHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHHHhHH
Q 042014 65 IINERK-QRRMISNRESARRSRMRKQKHLDELW-----------------------SQVVWLRNENHQLVDKLNHVSGCH 120 (169)
Q Consensus 65 ~~deRR-~RR~isNRESARRSR~RKq~~leeLe-----------------------~qV~~L~~eN~~L~~~l~~l~~~~ 120 (169)
.++|+- +++..--|++|---|.|.+..+++-. ...+.|..+-..+++.+..+...-
T Consensus 160 ~~eer~~kl~~~~qe~naeL~rarqreemneeh~~rlsdtvdErlqlhlkermaAle~kn~L~~e~~s~kk~l~~~~~~k 239 (916)
T KOG0249|consen 160 NIEERTRKLEEQLEELNAELQRARQREKMNEEHNKRLSDTVDERLQLHLKERMAALEDKNRLEQELESVKKQLEEMRHDK 239 (916)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556653 33445557777777776665443311 123445555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 042014 121 DKVIQENAELKVEATELRQ 139 (169)
Q Consensus 121 ~~l~~EN~~Lr~e~~~Lr~ 139 (169)
+.+...+..|+.++..|+.
T Consensus 240 ~rl~~d~E~Lr~e~~qL~~ 258 (916)
T KOG0249|consen 240 DKLRTDIEDLRGELDQLRR 258 (916)
T ss_pred HHHhhhHHHHHHHHHHHHH
Confidence 6666666666666666664
No 375
>PF13942 Lipoprotein_20: YfhG lipoprotein
Probab=37.05 E-value=1.7e+02 Score=24.53 Aligned_cols=28 Identities=18% Similarity=0.216 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042014 118 GCHDKVIQENAELKVEATELRQMLTDLQ 145 (169)
Q Consensus 118 ~~~~~l~~EN~~Lr~e~~~Lr~~L~~l~ 145 (169)
.+++.|..++..|+.++..-+++|..|.
T Consensus 130 ~~lD~Lr~qq~~Lq~qL~~T~RKLEnLT 157 (179)
T PF13942_consen 130 SELDALRQQQQRLQYQLDTTTRKLENLT 157 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3566777777777777777777776543
No 376
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=37.03 E-value=3.4e+02 Score=26.55 Aligned_cols=60 Identities=15% Similarity=0.160 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042014 85 RMRKQKHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTDL 144 (169)
Q Consensus 85 R~RKq~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l 144 (169)
-+|-.+.+.+.+..+...+.+-..|--++.....+.+....+|.+++.++..+..++..+
T Consensus 44 ~~r~~ae~~~~~~~L~Ka~tk~~~ldvklkha~~~vda~ik~rr~ae~d~~~~E~~i~~i 103 (604)
T KOG3564|consen 44 WKRTDAELGKYKDLLAKAETKRSALDVKLKHARNQVDAEIKRRRRAEADCEKLETQIQLI 103 (604)
T ss_pred HhhhhHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 333445555556667777777778888888888899999999999999988888776543
No 377
>PF14077 WD40_alt: Alternative WD40 repeat motif
Probab=36.84 E-value=41 Score=22.57 Aligned_cols=21 Identities=33% Similarity=0.327 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 042014 90 KHLDELWSQVVWLRNENHQLV 110 (169)
Q Consensus 90 ~~leeLe~qV~~L~~eN~~L~ 110 (169)
-++.|||.+|..|+.-|..|-
T Consensus 18 vrv~eLEeEV~~LrKINrdLf 38 (48)
T PF14077_consen 18 VRVSELEEEVRTLRKINRDLF 38 (48)
T ss_pred eeHHHHHHHHHHHHHHhHHHH
Confidence 356788888888887776654
No 378
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=36.71 E-value=86 Score=24.66 Aligned_cols=26 Identities=19% Similarity=0.170 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 91 HLDELWSQVVWLRNENHQLVDKLNHV 116 (169)
Q Consensus 91 ~leeLe~qV~~L~~eN~~L~~~l~~l 116 (169)
.++.|..++.+|...|..|..+...|
T Consensus 68 EVe~Lk~qI~eL~er~~~Le~EN~lL 93 (123)
T KOG4797|consen 68 EVEVLKEQIRELEERNSALERENSLL 93 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555555444
No 379
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=36.66 E-value=2.5e+02 Score=23.31 Aligned_cols=58 Identities=19% Similarity=0.237 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 042014 66 INERKQRRMISNRESARRSRMRKQKHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKV 123 (169)
Q Consensus 66 ~deRR~RR~isNRESARRSR~RKq~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l 123 (169)
.+-...++.+.+-++-+.+=..-+.++..++.++..|+-++..|..++..+....+.+
T Consensus 69 ~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL 126 (201)
T PF13851_consen 69 EEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDEL 126 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444677788888888888777788888888888888888888888777776654433
No 380
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=36.49 E-value=1.8e+02 Score=21.69 Aligned_cols=28 Identities=14% Similarity=0.164 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 042014 122 KVIQENAELKVEATELRQMLTDLQLNSH 149 (169)
Q Consensus 122 ~l~~EN~~Lr~e~~~Lr~~L~~l~~~~~ 149 (169)
.+..+-..-+....-++..+..+=.+|-
T Consensus 62 ~~~~~lk~~r~~~~v~k~v~q~lI~gSg 89 (106)
T PF05837_consen 62 KLEKELKKSRQRWRVMKNVFQALIVGSG 89 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3344444444455555555555554443
No 381
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=36.42 E-value=2.7e+02 Score=24.70 Aligned_cols=50 Identities=18% Similarity=0.167 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 042014 88 KQKHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATEL 137 (169)
Q Consensus 88 Kq~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~L 137 (169)
-+...+.|..+...+..|+......-..|..=|..|..+|..|+++...+
T Consensus 48 ~~Kk~~~l~kek~~l~~E~~k~~~~k~KLE~LCRELQk~Nk~lkeE~~~~ 97 (309)
T PF09728_consen 48 LQKKQEQLQKEKDQLQSELSKAILAKSKLESLCRELQKQNKKLKEESKRR 97 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777888888887777666777777888888888888776543
No 382
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=36.34 E-value=2.1e+02 Score=22.40 Aligned_cols=19 Identities=42% Similarity=0.435 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 042014 92 LDELWSQVVWLRNENHQLV 110 (169)
Q Consensus 92 leeLe~qV~~L~~eN~~L~ 110 (169)
+..+..++..|+..+..|.
T Consensus 57 ~~~~~~~~~~l~~~~~kl~ 75 (136)
T PF04871_consen 57 LEELASEVKELEAEKEKLK 75 (136)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444445555544444444
No 383
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=36.19 E-value=12 Score=36.36 Aligned_cols=34 Identities=24% Similarity=0.261 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 042014 87 RKQKHLDELWSQVVWLRNENHQLVDKLNHVSGCH 120 (169)
Q Consensus 87 RKq~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~ 120 (169)
+|-+.+++|..+|..|+..|..|......+.+++
T Consensus 322 kKLed~~~lk~qvk~Lee~N~~l~e~~~~LEeel 355 (713)
T PF05622_consen 322 KKLEDLEDLKRQVKELEEDNAVLLETKAMLEEEL 355 (713)
T ss_dssp ----------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4557788888899999988887777766665543
No 384
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=36.00 E-value=2.5e+02 Score=25.48 Aligned_cols=26 Identities=27% Similarity=0.344 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 90 KHLDELWSQVVWLRNENHQLVDKLNH 115 (169)
Q Consensus 90 ~~leeLe~qV~~L~~eN~~L~~~l~~ 115 (169)
++++.|+.++..+..+-..|..+++.
T Consensus 242 ~~~~~l~~~~~~~~~~i~~l~~~l~~ 267 (406)
T PF02388_consen 242 EYLESLQEKLEKLEKEIEKLEEKLEK 267 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66777777777777777766665543
No 385
>PF06937 EURL: EURL protein; InterPro: IPR009704 This family consists of several animal EURL proteins. EURL is preferentially expressed in chick retinal precursor cells as well as in the anterior epithelial cells of the lens at early stages of development. EURL transcripts are found primarily in the peripheral dorsal retina, i.e., the most undifferentiated part of the dorsal retina. EURL transcripts are also detected in the lens at stage 18 and remain abundant in the proliferating epithelial cells of the lens until at least day 11. The distribution pattern of EURL in the developing retina and lens suggest a role before the events leading to cell determination and differentiation [].
Probab=35.92 E-value=1.8e+02 Score=26.11 Aligned_cols=48 Identities=19% Similarity=0.189 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042014 98 QVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTDLQ 145 (169)
Q Consensus 98 qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l~ 145 (169)
-+.+|..-|..|+.+|..+.+.+...++|-..|-+|+.--.-.|..|-
T Consensus 220 t~~EL~qL~~~L~~qIq~vfeeLt~~vQEKDsLaSElhVRHVaIEQLl 267 (285)
T PF06937_consen 220 TLDELKQLNEKLLQQIQDVFEELTQQVQEKDSLASELHVRHVAIEQLL 267 (285)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777888899999999999999999999999888876665555443
No 386
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=35.88 E-value=3.8e+02 Score=25.30 Aligned_cols=57 Identities=19% Similarity=0.228 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042014 89 QKHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTDLQ 145 (169)
Q Consensus 89 q~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l~ 145 (169)
+..+..|+..|..|+.+-......+..+.+........-..|..++..++..|..+.
T Consensus 301 k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~ 357 (522)
T PF05701_consen 301 KEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAK 357 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444445555566666666666665544
No 387
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=35.84 E-value=2.3e+02 Score=27.65 Aligned_cols=62 Identities=21% Similarity=0.231 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH----HHHHHHHHHHHHHhhhcCCC
Q 042014 89 QKHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAEL----KVEATELRQMLTDLQLNSHY 150 (169)
Q Consensus 89 q~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~L----r~e~~~Lr~~L~~l~~~~~~ 150 (169)
++++++++.-+++|.+++..+..++..+...|.....+|... +.|+..|...|..+++-+..
T Consensus 486 ee~i~~~~~~i~El~~~l~~~e~~L~~a~s~~~~~ke~~e~e~~a~~~E~eklE~el~~lnL~s~t 551 (622)
T COG5185 486 EEDIKNLKHDINELTQILEKLELELSEANSKFELSKEENERELVAQRIEIEKLEKELNDLNLLSKT 551 (622)
T ss_pred HHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhccc
Confidence 578888899999999999999999998888888777776554 56888899999988876544
No 388
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=35.77 E-value=57 Score=21.63 Aligned_cols=14 Identities=21% Similarity=0.162 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHH
Q 042014 93 DELWSQVVWLRNEN 106 (169)
Q Consensus 93 eeLe~qV~~L~~eN 106 (169)
..++.+++.++.++
T Consensus 51 ~~~~k~l~~le~e~ 64 (68)
T PF06305_consen 51 RRLRKELKKLEKEL 64 (68)
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444444333
No 389
>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]
Probab=35.67 E-value=2.9e+02 Score=23.83 Aligned_cols=34 Identities=21% Similarity=0.264 Sum_probs=18.3
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 70 KQRRMISNRESARRSRMRKQKHLDELWSQVVWLR 103 (169)
Q Consensus 70 R~RR~isNRESARRSR~RKq~~leeLe~qV~~L~ 103 (169)
|.||+..--.+-|.-|.-=+.=.++|..-|-..+
T Consensus 59 k~rrr~aHtqaEqkRRdAIk~GYddLq~LvP~cq 92 (229)
T KOG1319|consen 59 KDRRRRAHTQAEQKRRDAIKRGYDDLQTLVPTCQ 92 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHhchHHHHHhccccc
Confidence 5566544444444444444555677776665443
No 390
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=35.56 E-value=2e+02 Score=21.99 Aligned_cols=72 Identities=19% Similarity=0.211 Sum_probs=42.8
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 70 KQRRMISNRESARRSRMRKQKHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTD 143 (169)
Q Consensus 70 R~RR~isNRESARRSR~RKq~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~ 143 (169)
+..=+..|+.-|...=. ++..++++..++..+-.+-..|..++..+..++..+ ..+-....-...|+..+..
T Consensus 36 ~~~l~~~n~~lAe~nL~-~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l-~~~~s~~~l~~~L~~~~~e 107 (150)
T PF07200_consen 36 REELLAENEELAEQNLS-LEPELEELRSQLQELYEELKELESEYQEKEQQQDEL-SSNYSPDALLARLQAAASE 107 (150)
T ss_dssp HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HccCCHHHHHHHHHHHHHH
Confidence 34445677777765533 356777777777777777777777777777666666 4444444444445544443
No 391
>cd07588 BAR_Amphiphysin The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Amphiphysins function primarily in endocytosis and other membrane remodeling events. They contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. This subfamily is composed of different isoforms of amphiphysin and Bridging integrator 2 (Bin2). Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin and synaptojanin. They function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of th
Probab=35.53 E-value=1.4e+02 Score=25.14 Aligned_cols=56 Identities=20% Similarity=0.184 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 042014 84 SRMRKQKHLDELWSQVVWLRNENH----QLVDKLNHVSGCHDKVIQENAELKVEATELRQ 139 (169)
Q Consensus 84 SR~RKq~~leeLe~qV~~L~~eN~----~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~ 139 (169)
-|.+|+--++.....+..|...-. .|..--+.+...-..-..-|..|+.|+..|-.
T Consensus 112 KR~~KllDYDr~r~~~~kL~~K~~kde~KL~kae~el~~Ak~~Ye~lN~~L~~ELP~L~~ 171 (211)
T cd07588 112 KRGRKLVDYDSARHNLEALKAKKKVDDQKLTKAEEELQQAKKVYEELNTELHEELPALYD 171 (211)
T ss_pred HHhhHHHhHHHHHHHHHHHHhcccccHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 356677788888888888764422 12222222222223334558999999887753
No 392
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=35.51 E-value=1.5e+02 Score=22.95 Aligned_cols=43 Identities=16% Similarity=0.125 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 101 WLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTD 143 (169)
Q Consensus 101 ~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~ 143 (169)
.|...--.+...++.+......+..|...|+.++..|...|.+
T Consensus 83 ~L~hR~l~v~~~~eilr~~g~~l~~eEe~L~~~le~l~~~l~~ 125 (141)
T PF13874_consen 83 ELSHRLLRVLRKQEILRNRGYALSPEEEELRKRLEALEAQLNA 125 (141)
T ss_dssp HHHHHHHHHHHHHHHHHH-------------------------
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 3333333334444444444444555555555555555555443
No 393
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=35.42 E-value=1.6e+02 Score=20.74 Aligned_cols=33 Identities=21% Similarity=0.314 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 042014 92 LDELWSQVVWLRNENHQLVDKLNHVSGCHDKVI 124 (169)
Q Consensus 92 leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~ 124 (169)
++.+..+|..|+..-..|...+..+...+..+.
T Consensus 16 l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~~ 48 (92)
T PF14712_consen 16 LDRLDQQLQELRQSQEELLQQIDRLNEKLKELN 48 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666655555555555555444333
No 394
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=35.40 E-value=2.7e+02 Score=23.46 Aligned_cols=60 Identities=12% Similarity=0.188 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-----HHHHHHHHHHHHHHHHHHhhhcC
Q 042014 89 QKHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQ-----ENAELKVEATELRQMLTDLQLNS 148 (169)
Q Consensus 89 q~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~-----EN~~Lr~e~~~Lr~~L~~l~~~~ 148 (169)
....+.+..++..|......+...+..+..+...+-. .+..|...+.+.+.+|.+|+...
T Consensus 79 ~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~l~~~l~ea~~mL~emr~r~ 143 (264)
T PF06008_consen 79 NNNTERTLQRAQDLEQFIQNLQDNIQELIEQVESLNENGDQLPSEDLQRALAEAQRMLEEMRKRD 143 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHHHHHHHHHHhcc
Confidence 4445556666666666666666666666666655555 45666666677777777776654
No 395
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=35.37 E-value=2.6e+02 Score=27.39 Aligned_cols=54 Identities=20% Similarity=0.183 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042014 92 LDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTDLQ 145 (169)
Q Consensus 92 leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l~ 145 (169)
++.|+.++.....+|..|..-+....+++..+...-..+..+..+....|..|+
T Consensus 96 lE~L~~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lq 149 (617)
T PF15070_consen 96 LESLEEQLQAQVENNEQLSRLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQ 149 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 455555555544455555444444444555555555555555555555554444
No 396
>cd07598 BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of Family with sequence similarity 92 (FAM92). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins from the family with sequence similarity 92 (FAM92), which were originally identified by the presence of the unknown domain DUF1208. This domain shows similarity to the BAR domains of sorting nexins. Mammals contain at least two member types, FAM92A and FAM92B, which may exist in many variants. The Xenopus homolog of FAM92A1, xVAP019, is essential for embryo survival and cell differentiation. FAM92A1 may be involved in regulating cell proliferation and apoptosis. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=35.33 E-value=2.2e+02 Score=23.86 Aligned_cols=56 Identities=25% Similarity=0.291 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHHHHHHHHHHHhh
Q 042014 90 KHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKV-IQENAELKVEATELRQMLTDLQ 145 (169)
Q Consensus 90 ~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l-~~EN~~Lr~e~~~Lr~~L~~l~ 145 (169)
+|+.+|-..+..|......|+.....+...+..+ ..||-.|+.-+..|-..+..++
T Consensus 18 ~hl~~l~~~~~~lv~k~~~L~~~~~~fak~~~~la~~E~~~L~~~L~~lae~~~~i~ 74 (211)
T cd07598 18 KHFGELCQDFAAYTRKTARLRDKGDELAKSINAYADTENPSLKQGLKNFAECLAALQ 74 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555555555444333 4568888887777776655544
No 397
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=35.30 E-value=1.5e+02 Score=29.58 Aligned_cols=51 Identities=24% Similarity=0.173 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 042014 90 KHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQM 140 (169)
Q Consensus 90 ~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~ 140 (169)
+.+++|..+-..|+.|+..-+.--..|.+++..++.|=..+|+++...|+.
T Consensus 329 akVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ea~~ar~~ 379 (832)
T KOG2077|consen 329 AKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAEAEDARQK 379 (832)
T ss_pred HHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 346777777777777766655555556666666666666666666666554
No 398
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=35.29 E-value=85 Score=22.86 Aligned_cols=18 Identities=17% Similarity=0.412 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 042014 99 VVWLRNENHQLVDKLNHV 116 (169)
Q Consensus 99 V~~L~~eN~~L~~~l~~l 116 (169)
+..|..||.+|..+|..+
T Consensus 2 i~ei~eEn~~Lk~eiqkl 19 (76)
T PF07334_consen 2 IHEIQEENARLKEEIQKL 19 (76)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 345667777777666544
No 399
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=35.04 E-value=2.3e+02 Score=22.46 Aligned_cols=50 Identities=20% Similarity=0.153 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 94 ELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTD 143 (169)
Q Consensus 94 eLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~ 143 (169)
.+..+...++.+.......+..+...+..+..+-..++.....|+.....
T Consensus 88 ~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~~ 137 (177)
T PF13870_consen 88 FLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQGGL 137 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 44455555555555555555555555555555555555555555554433
No 400
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=34.99 E-value=2.2e+02 Score=22.16 Aligned_cols=21 Identities=29% Similarity=0.352 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 042014 126 ENAELKVEATELRQMLTDLQL 146 (169)
Q Consensus 126 EN~~Lr~e~~~Lr~~L~~l~~ 146 (169)
+=..|++++..|++++.+++.
T Consensus 84 ~~~~l~~rvd~Lerqv~~Len 104 (108)
T COG3937 84 EMDELTERVDALERQVADLEN 104 (108)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 347788888888888887763
No 401
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.77 E-value=5.3e+02 Score=26.86 Aligned_cols=6 Identities=50% Similarity=0.479 Sum_probs=2.2
Q ss_pred HHHHHH
Q 042014 94 ELWSQV 99 (169)
Q Consensus 94 eLe~qV 99 (169)
+|+.+|
T Consensus 689 eL~~~v 694 (970)
T KOG0946|consen 689 ELEEEV 694 (970)
T ss_pred HHHHHH
Confidence 333333
No 402
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=34.73 E-value=2.4e+02 Score=25.35 Aligned_cols=37 Identities=22% Similarity=0.210 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 042014 87 RKQKHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKV 123 (169)
Q Consensus 87 RKq~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l 123 (169)
+..+.+.+|+.+...|..+|...+..+..+...+..+
T Consensus 105 ~L~~~~~el~~~k~~l~~~~~~k~~~L~~l~~~L~~l 141 (355)
T PF09766_consen 105 RLEEQLKELEQRKKKLQQENKKKKKFLDSLPPQLKSL 141 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3445556666666666666666555555555444433
No 403
>KOG4426 consensus Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=34.62 E-value=1.3e+02 Score=29.17 Aligned_cols=74 Identities=19% Similarity=0.186 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH----HHHHHHHHHHHHHHHHhhhc-CCC-C------CCCCCCCCC
Q 042014 93 DELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQEN----AELKVEATELRQMLTDLQLN-SHY-S------SLKDLDDVP 160 (169)
Q Consensus 93 eeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN----~~Lr~e~~~Lr~~L~~l~~~-~~~-~------~~~~l~~~~ 160 (169)
+-|+.-+.+++.+|..|+-++..+....+...+.| ..+..++..|-..--.+... -|. | +..-|+|.-
T Consensus 32 e~L~~~l~~~q~~n~klk~r~sil~KSia~~~a~~~~~~~ni~~~L~~lF~~aik~a~Pd~~~vp~liaps~~~kFGDYQ 111 (656)
T KOG4426|consen 32 ELLEHILVQLQKENDKLKYRLSILEKSIAEEAAKNEKFTSNIFRRLQSLFDVAIKLAFPDLPDVPLLIAPSPNAKFGDYQ 111 (656)
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccHHHHHHHHHHHHHHHhCCCCCCCCceeccCccccccccc
Confidence 34555589999999999999999988777766655 23333443333221111111 111 1 225688999
Q ss_pred Ccchhh
Q 042014 161 CCNAAD 166 (169)
Q Consensus 161 ~~~~~~ 166 (169)
||+|--
T Consensus 112 CNnAMg 117 (656)
T KOG4426|consen 112 CNNAMG 117 (656)
T ss_pred ccchhh
Confidence 999743
No 404
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=34.47 E-value=3.2e+02 Score=23.95 Aligned_cols=21 Identities=19% Similarity=0.205 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 042014 125 QENAELKVEATELRQMLTDLQ 145 (169)
Q Consensus 125 ~EN~~Lr~e~~~Lr~~L~~l~ 145 (169)
..-..|+.++.+++.+|..+.
T Consensus 214 ~~i~~L~~~l~~~~~~l~~l~ 234 (362)
T TIGR01010 214 SLISTLEGELIRVQAQLAQLR 234 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334566667777777776655
No 405
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=34.43 E-value=3.5e+02 Score=24.39 Aligned_cols=45 Identities=16% Similarity=0.114 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHHHHHHHHH
Q 042014 97 SQVVWLRNENHQLVDKLNHVSGCHDKV-IQENAELKVEATELRQML 141 (169)
Q Consensus 97 ~qV~~L~~eN~~L~~~l~~l~~~~~~l-~~EN~~Lr~e~~~Lr~~L 141 (169)
.+.+.++..+..+......++..--.. .++=.+.+++-.+-|+++
T Consensus 117 ~~~k~~~ks~~~~~~a~~r~q~~e~~~~~qkRrreK~e~~eaRqRV 162 (290)
T KOG2689|consen 117 EREKQRRKSGDEMSAAKRRLQDDEMRRAAQKRRREKAEDEEARQRV 162 (290)
T ss_pred hhHHhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 455566666666666555555433322 333444454555555544
No 406
>PLN03188 kinesin-12 family protein; Provisional
Probab=34.29 E-value=1.5e+02 Score=31.75 Aligned_cols=43 Identities=26% Similarity=0.264 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHh------------------------HHHHHHHHHHHHHHHHHHHHHHH
Q 042014 99 VVWLRNENHQLVDKLNHVSG------------------------CHDKVIQENAELKVEATELRQML 141 (169)
Q Consensus 99 V~~L~~eN~~L~~~l~~l~~------------------------~~~~l~~EN~~Lr~e~~~Lr~~L 141 (169)
...|+.||..|+.+|....+ +...++.||..++.++.+|.++-
T Consensus 1175 r~~~~~enk~l~~qlrdtaeav~aagellvrl~eaeea~~~a~~r~~~~eqe~~~~~k~~~klkrkh 1241 (1320)
T PLN03188 1175 RRYLRDENKSLQAQLRDTAEAVQAAGELLVRLKEAEEALTVAQKRAMDAEQEAAEAYKQIDKLKRKH 1241 (1320)
T ss_pred HHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445558888877665433 34567889999999999998765
No 407
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=34.17 E-value=1.6e+02 Score=28.21 Aligned_cols=52 Identities=23% Similarity=0.261 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHh------------------------HHHHHHHHHHHHHHHH
Q 042014 90 KHLDELWSQVVWLRN-----------ENHQLVDKLNHVSG------------------------CHDKVIQENAELKVEA 134 (169)
Q Consensus 90 ~~leeLe~qV~~L~~-----------eN~~L~~~l~~l~~------------------------~~~~l~~EN~~Lr~e~ 134 (169)
+-+..|.+++..|+. ||..|+.++....+ ....+..||..++.++
T Consensus 385 rF~~slaaEiSalr~erEkEr~~l~~eNk~L~~QLrDTAEAVqAagEllvrl~eaeea~~~a~~r~~~~eqe~ek~~kqi 464 (488)
T PF06548_consen 385 RFINSLAAEISALRAEREKERRFLKDENKGLQIQLRDTAEAVQAAGELLVRLREAEEAASVAQERAMDAEQENEKAKKQI 464 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555 88888877765533 2455678899999999
Q ss_pred HHHHHHH
Q 042014 135 TELRQML 141 (169)
Q Consensus 135 ~~Lr~~L 141 (169)
..|...-
T Consensus 465 ekLK~kh 471 (488)
T PF06548_consen 465 EKLKRKH 471 (488)
T ss_pred HHHHHHH
Confidence 8888753
No 408
>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]
Probab=33.85 E-value=78 Score=31.00 Aligned_cols=55 Identities=22% Similarity=0.221 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 042014 89 QKHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTDLQLNSHY 150 (169)
Q Consensus 89 q~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l~~~~~~ 150 (169)
+..+..|+.++..+..++++|. +-.+.+.++|..|+.++.-.+.-+..++.-.+.
T Consensus 422 ~~e~s~l~~~~vt~~~q~~el~-------~~v~~l~~~n~~l~s~~~~~r~nl~~~kp~~~~ 476 (669)
T KOG0818|consen 422 KSELSDLRKQAVTLTKQVQELT-------EVVHALQASNAKLQSLMKVNRENLYNLKPTNPT 476 (669)
T ss_pred hhhhhhHhhcchhhHHHHHHHH-------HHHHHHHhhhHHHHHHHhhccccccccccCCcc
Confidence 4456666666666666655544 445667889999999998888777666654444
No 409
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=33.74 E-value=2.6e+02 Score=27.00 Aligned_cols=72 Identities=10% Similarity=0.299 Sum_probs=42.5
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhHHHH----HHHHHHHHHHHHHHHHHHHHH
Q 042014 75 ISNRESARRSRMRKQKHLDELWSQVVWLRNEN-------HQLVDKLNHVSGCHDK----VIQENAELKVEATELRQMLTD 143 (169)
Q Consensus 75 isNRESARRSR~RKq~~leeLe~qV~~L~~eN-------~~L~~~l~~l~~~~~~----l~~EN~~Lr~e~~~Lr~~L~~ 143 (169)
..++..++....-++..+++++.+|+.++..+ .+...++..|...... +..-...|......+++.+.+
T Consensus 176 ~~~~w~~~~~~Lp~~~~~~~yk~~v~~i~~~~ik~p~~i~~~~~e~d~lk~e~~~~~~~i~~~~~~l~~~~~~~~~~~~~ 255 (555)
T TIGR03545 176 MQQKWKKRKKDLPNKQDLEEYKKRLEAIKKKDIKNPLELQKIKEEFDKLKKEGKADKQKIKSAKNDLQNDKKQLKADLAE 255 (555)
T ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 34566666666666778888899999888751 1233344444333322 444445555556666666666
Q ss_pred hhh
Q 042014 144 LQL 146 (169)
Q Consensus 144 l~~ 146 (169)
++.
T Consensus 256 lk~ 258 (555)
T TIGR03545 256 LKK 258 (555)
T ss_pred HHh
Confidence 654
No 410
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=33.63 E-value=1.7e+02 Score=22.20 Aligned_cols=28 Identities=14% Similarity=0.163 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 042014 94 ELWSQVVWLRNENHQLVDKLNHVSGCHD 121 (169)
Q Consensus 94 eLe~qV~~L~~eN~~L~~~l~~l~~~~~ 121 (169)
.|+..+..|..+-..+..+++.+.....
T Consensus 105 ~l~~~~~~l~~~l~~~~~~~~~~~~~l~ 132 (140)
T PRK03947 105 ELEKALEKLEEALQKLASRIAQLAQELQ 132 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444443333
No 411
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=33.20 E-value=4.1e+02 Score=25.18 Aligned_cols=66 Identities=21% Similarity=0.329 Sum_probs=34.7
Q ss_pred cHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 042014 65 IINERKQRRMISNRESARRSRMRKQKHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVE 133 (169)
Q Consensus 65 ~~deRR~RR~isNRESARRSR~RKq~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e 133 (169)
..-|+|.|..|+.=|.-|....+-.+.=++| +.+|+.|-.+|..+|+--.++....+.+-..|..+
T Consensus 110 aAaE~khrKli~dLE~dRe~haqdaaeGDDl---t~~LEKEReqL~QQiEFe~~e~kK~E~~k~Kl~~q 175 (561)
T KOG1103|consen 110 AAAEKKHRKLIKDLEADREAHAQDAAEGDDL---TAHLEKEREQLQQQIEFEIEEKKKAEIAKDKLEMQ 175 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhccchH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777766665544333333333333 45666666667666665554444444444444333
No 412
>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=33.16 E-value=2.2e+02 Score=21.65 Aligned_cols=23 Identities=17% Similarity=0.260 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHH
Q 042014 104 NENHQLVDKLNHVSGCHDKVIQE 126 (169)
Q Consensus 104 ~eN~~L~~~l~~l~~~~~~l~~E 126 (169)
.++..|..++..+..+......+
T Consensus 80 ~ei~~l~~~l~~l~~~~~~~~~~ 102 (108)
T PF06210_consen 80 QEIERLHRKLDALREKLGELLER 102 (108)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHH
Confidence 34445555555555444444443
No 413
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=33.14 E-value=1.9e+02 Score=21.07 Aligned_cols=52 Identities=21% Similarity=0.142 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 042014 94 ELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTDLQL 146 (169)
Q Consensus 94 eLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l~~ 146 (169)
+|..++..-+.|...|..-++.+...+.....-|..|..+...++.. .....
T Consensus 9 ~L~~kL~~K~eEI~rLn~lv~sLR~KLiKYt~LnkkLq~~~~~~~~~-~~~~~ 60 (76)
T PF11544_consen 9 ELKKKLNDKQEEIDRLNILVGSLRGKLIKYTELNKKLQDQLLNLQRS-NDLNK 60 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccchh
Confidence 44555555555555555555555555556666777777777777765 44443
No 414
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=32.92 E-value=2.9e+02 Score=23.06 Aligned_cols=59 Identities=15% Similarity=0.236 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042014 86 MRKQKHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTDL 144 (169)
Q Consensus 86 ~RKq~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l 144 (169)
.|=..+++.++.++..|..+...+...+..+..........-..+..++..|..+|...
T Consensus 130 e~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkea 188 (237)
T PF00261_consen 130 ERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEA 188 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
No 415
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=32.91 E-value=4.8e+02 Score=27.79 Aligned_cols=67 Identities=10% Similarity=0.009 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH----HHHHHHHHHHHHHHHHHhh
Q 042014 79 ESARRSRMRKQKHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQE----NAELKVEATELRQMLTDLQ 145 (169)
Q Consensus 79 ESARRSR~RKq~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~E----N~~Lr~e~~~Lr~~L~~l~ 145 (169)
..|.+....-++++++++..+...+.+-..+..++..+..++..+..- -..|.+++..++++|..+.
T Consensus 871 ~~A~~~~~~a~~~le~ae~~l~~~~~e~~~~~~e~~~a~~~l~~l~e~l~~~~eel~a~L~e~r~rL~~l~ 941 (1353)
T TIGR02680 871 RHAATRAAEQRARAARAESDAREAAEDAAEARAEAEEASLRLRTLEESVGAMVDEIRARLAETRAALASGG 941 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 416
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=32.88 E-value=3.5e+02 Score=23.94 Aligned_cols=52 Identities=25% Similarity=0.239 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 91 HLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLT 142 (169)
Q Consensus 91 ~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~ 142 (169)
.+.+.+.++...+.+-..+..++..+...+.....|...|..++.....+|.
T Consensus 229 ~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~ 280 (344)
T PF12777_consen 229 ELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLE 280 (344)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3344444444444444444555555555555555555555555555444443
No 417
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=32.75 E-value=6.1e+02 Score=26.69 Aligned_cols=54 Identities=19% Similarity=0.188 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042014 91 HLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTDL 144 (169)
Q Consensus 91 ~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l 144 (169)
.+++||.+-..+...-..|+.....+.+..+.|..+-+.+.+++.++...+-.+
T Consensus 352 k~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~~l~aerqeQidelKn~if~~ 405 (1265)
T KOG0976|consen 352 KLNELEKKRDMALMDVRSIQEKKENVEEELQSLLELQAERQEQIDELKNHIFRL 405 (1265)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 344555555555555555555555555555555555555555555555444433
No 418
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=32.62 E-value=1.9e+02 Score=20.69 Aligned_cols=12 Identities=0% Similarity=-0.045 Sum_probs=4.3
Q ss_pred HHHHHHHHHHHH
Q 042014 126 ENAELKVEATEL 137 (169)
Q Consensus 126 EN~~Lr~e~~~L 137 (169)
++...++-+..+
T Consensus 67 ~i~~k~~~L~~~ 78 (83)
T PF07544_consen 67 QIRKKREVLQKF 78 (83)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 419
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=32.62 E-value=2.3e+02 Score=22.10 Aligned_cols=49 Identities=12% Similarity=0.068 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 042014 89 QKHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATEL 137 (169)
Q Consensus 89 q~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~L 137 (169)
...++.|+.++.........-...|..+...+..+..++..+...+...
T Consensus 40 ~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~~~~v 88 (160)
T PF13094_consen 40 LHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKKAHPV 88 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchh
No 420
>PF14282 FlxA: FlxA-like protein
Probab=32.55 E-value=2.1e+02 Score=21.31 Aligned_cols=12 Identities=25% Similarity=0.194 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHH
Q 042014 93 DELWSQVVWLRN 104 (169)
Q Consensus 93 eeLe~qV~~L~~ 104 (169)
..|..++..|..
T Consensus 29 ~~Lq~ql~~l~~ 40 (106)
T PF14282_consen 29 KQLQEQLQELSQ 40 (106)
T ss_pred HHHHHHHHHHHc
Confidence 334444444443
No 421
>PF12737 Mating_C: C-terminal domain of homeodomain 1; InterPro: IPR024441 Mating in fungi is controlled by the loci that determine the mating type of an individual, and only individuals with differing mating types can mate. Basidiomycete fungi have evolved a unique mating system, termed tetrapolar or bifactorial incompatibility, in which mating type is determined by two unlinked loci; compatibility at both loci is required for mating to occur. The multi-allelic tetrapolar mating system is considered to be a novel innovation that could have only evolved once, and is thus unique to the mushroom fungi. This domain is found in the C-terminal of some mating-type proteins.
Probab=32.49 E-value=51 Score=30.78 Aligned_cols=22 Identities=41% Similarity=0.413 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 042014 85 RMRKQKHLDELWSQVVWLRNEN 106 (169)
Q Consensus 85 R~RKq~~leeLe~qV~~L~~eN 106 (169)
|.-|++++.+|++|+..|++|.
T Consensus 397 ~~AK~reL~eLeAq~~aL~AEL 418 (419)
T PF12737_consen 397 REAKRRELEELEAQARALRAEL 418 (419)
T ss_pred HHHHHHHHHHHHHHHHHHHhhh
Confidence 4447889999999999999874
No 422
>cd07611 BAR_Amphiphysin_I_II The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysin I and II. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Amphiphysins function primarily in endocytosis and other membrane remodeling events. They contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin and synaptojanin. They function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of the T-tubule network. The N-BAR domain of amphiphysin forms a curved dimer with a posit
Probab=32.47 E-value=2.7e+02 Score=23.70 Aligned_cols=55 Identities=16% Similarity=0.163 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 042014 84 SRMRKQKHLDELWSQVVWLRNEN----HQLVDKLNHVSGCHDKVIQENAELKVEATELR 138 (169)
Q Consensus 84 SR~RKq~~leeLe~qV~~L~~eN----~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr 138 (169)
-|.+|+--.+.....|..|...- ..|.+--+.+...-..-..=|..|+.|+..|-
T Consensus 112 KR~hKllDYD~~r~~~~kL~~k~~kDe~KL~kAe~el~~Ak~~ye~lN~~Lk~ELP~L~ 170 (211)
T cd07611 112 KRSRKLVDYDSARHHLEALQTSKRKDEGRIAKAEEEFQKAQKVFEEFNVDLQEELPSLW 170 (211)
T ss_pred HHHHHHhhHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888888888888887532 12333223333333334455999999998875
No 423
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=32.27 E-value=1.7e+02 Score=22.22 Aligned_cols=30 Identities=17% Similarity=0.276 Sum_probs=13.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 042014 110 VDKLNHVSGCHDKVIQENAELKVEATELRQ 139 (169)
Q Consensus 110 ~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~ 139 (169)
...+.....+++.+.++|..|++++..|+.
T Consensus 56 ~~qi~~~~~e~~~L~~~~~~l~~ei~~L~d 85 (117)
T COG2919 56 QRQIAAQQAELEKLSARNTALEAEIKDLKD 85 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 333333344444444455555555554443
No 424
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=32.22 E-value=2.2e+02 Score=29.85 Aligned_cols=33 Identities=18% Similarity=0.191 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 042014 88 KQKHLDELWSQVVWLRNENHQLVDKLNHVSGCH 120 (169)
Q Consensus 88 Kq~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~ 120 (169)
+.+.+...+.....+.+++.+|..++..+..+.
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (1123)
T PRK11448 175 QQQELVALEGLAAELEEKQQELEAQLEQLQEKA 207 (1123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555566666666666666655443
No 425
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=32.13 E-value=1.2e+02 Score=22.73 Aligned_cols=15 Identities=27% Similarity=-0.008 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHH
Q 042014 123 VIQENAELKVEATEL 137 (169)
Q Consensus 123 l~~EN~~Lr~e~~~L 137 (169)
+..||..|+..+.-.
T Consensus 90 L~~E~diLKKa~~~~ 104 (121)
T PRK09413 90 KTMENELLKEAVEYG 104 (121)
T ss_pred HHHHHHHHHHHHHHh
Confidence 344555555544433
No 426
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=32.12 E-value=4e+02 Score=26.59 Aligned_cols=27 Identities=22% Similarity=0.341 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 91 HLDELWSQVVWLRNENHQLVDKLNHVS 117 (169)
Q Consensus 91 ~leeLe~qV~~L~~eN~~L~~~l~~l~ 117 (169)
.+.+|+.+.+.|+..-+.|..+++.+.
T Consensus 580 ~L~~l~e~~~~l~~~ae~LaeR~e~a~ 606 (717)
T PF10168_consen 580 ELQELQEERKSLRESAEKLAERYEEAK 606 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444455555444444444444443
No 427
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=31.79 E-value=4.9e+02 Score=27.21 Aligned_cols=73 Identities=23% Similarity=0.280 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHH--HHHHHHHHHHHH-------HHHHHH--HHH-HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042014 78 RESARRSRMRKQ--KHLDELWSQVVW-------LRNENH--QLV-DKLNHVSGCHDKVIQENAELKVEATELRQMLTDLQ 145 (169)
Q Consensus 78 RESARRSR~RKq--~~leeLe~qV~~-------L~~eN~--~L~-~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l~ 145 (169)
|+.|+.++..++ .++..+++++.- |-..+. .+. .++..+.++.+.+..|-..|.+++..+-..|..|.
T Consensus 729 ~e~A~~~qq~~q~~srl~~~~aql~~v~~~~~eL~~~~~~~~~~e~E~~~lEe~~d~~~ee~~el~a~v~~~~~qi~~lE 808 (984)
T COG4717 729 REAAREEQQLTQRESRLESLEAQLEGVAAEAYELSASLDQRELKEEELALLEEAIDALDEEVEELHAQVAALSRQIAQLE 808 (984)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 667777777765 344555554441 111111 122 33334444555555555666666666666666666
Q ss_pred hcCCC
Q 042014 146 LNSHY 150 (169)
Q Consensus 146 ~~~~~ 150 (169)
-+..+
T Consensus 809 ~g~~~ 813 (984)
T COG4717 809 GGGTV 813 (984)
T ss_pred cCChH
Confidence 55443
No 428
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=31.75 E-value=3.3e+02 Score=23.26 Aligned_cols=19 Identities=21% Similarity=0.185 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 042014 94 ELWSQVVWLRNENHQLVDK 112 (169)
Q Consensus 94 eLe~qV~~L~~eN~~L~~~ 112 (169)
.|+.+...+..++..|...
T Consensus 51 ~Le~k~~eaee~~~rL~~~ 69 (246)
T PF00769_consen 51 ELEQKRQEAEEEKQRLEEE 69 (246)
T ss_dssp HHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443
No 429
>PRK15396 murein lipoprotein; Provisional
Probab=31.75 E-value=2e+02 Score=20.84 Aligned_cols=26 Identities=15% Similarity=0.213 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 91 HLDELWSQVVWLRNENHQLVDKLNHV 116 (169)
Q Consensus 91 ~leeLe~qV~~L~~eN~~L~~~l~~l 116 (169)
.++.|..+|.++..+-..++..+...
T Consensus 33 qV~~L~~kvdql~~dv~~~~~~~~~a 58 (78)
T PRK15396 33 DVQTLNAKVDQLSNDVNAMRSDVQAA 58 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555544443
No 430
>PRK11281 hypothetical protein; Provisional
Probab=31.73 E-value=6e+02 Score=26.86 Aligned_cols=48 Identities=21% Similarity=0.122 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 042014 99 VVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTDLQL 146 (169)
Q Consensus 99 V~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l~~ 146 (169)
+..+-..|..|...+....++.+.+..+|.+.+..+..+++-+..++.
T Consensus 280 i~~~~~~N~~Ls~~L~~~t~~~~~l~~~~~~~~~~l~~~~q~~~~i~e 327 (1113)
T PRK11281 280 VAQELEINLQLSQRLLKATEKLNTLTQQNLRVKNWLDRLTQSERNIKE 327 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667799999999999999999999999999988888887775543
No 431
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=31.62 E-value=3.9e+02 Score=26.88 Aligned_cols=60 Identities=17% Similarity=0.116 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 042014 81 ARRSRMRKQKHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQM 140 (169)
Q Consensus 81 ARRSR~RKq~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~ 140 (169)
+.++..-=|.+++..+.++.+++.....+..++.........+..|+..|+..+..++..
T Consensus 564 ~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~k~~ 623 (698)
T KOG0978|consen 564 AKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLERLKKE 623 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 455566667889999999999999999999999999999999999999999988777643
No 432
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=31.56 E-value=2.2e+02 Score=22.30 Aligned_cols=26 Identities=12% Similarity=0.173 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042014 120 HDKVIQENAELKVEATELRQMLTDLQ 145 (169)
Q Consensus 120 ~~~l~~EN~~Lr~e~~~Lr~~L~~l~ 145 (169)
...+...-..|++++.+|+..|..+-
T Consensus 86 i~tLekQe~~l~e~l~eLq~~i~~~l 111 (119)
T COG1382 86 IKTLEKQEEKLQERLEELQSEIQKAL 111 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344445556666666776666554
No 433
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=31.07 E-value=4.7e+02 Score=24.86 Aligned_cols=57 Identities=11% Similarity=0.144 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 042014 90 KHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTDLQL 146 (169)
Q Consensus 90 ~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l~~ 146 (169)
.-..+++.++..+..+-..+..+...+.+....+..+-...+..+..++..|..++.
T Consensus 376 ~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr 432 (569)
T PRK04778 376 IAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIKR 432 (569)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335555566666666666666666666666666666666677777777777766663
No 434
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=31.03 E-value=3.3e+02 Score=23.12 Aligned_cols=27 Identities=26% Similarity=0.409 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 042014 121 DKVIQENAELKVEATELRQMLTDLQLN 147 (169)
Q Consensus 121 ~~l~~EN~~Lr~e~~~Lr~~L~~l~~~ 147 (169)
..+..+=..|+.++...+.+|..+..+
T Consensus 119 eemQe~i~~L~kev~~~~erl~~~k~g 145 (201)
T KOG4603|consen 119 EEMQEEIQELKKEVAGYRERLKNIKAG 145 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555666777777777777666654
No 435
>TIGR01461 greB transcription elongation factor GreB. The GreA and GreB transcription elongation factors enable to continuation of RNA transcription past template-encoded arresting sites. Among the Proteobacteria, distinct clades of GreA and GreB are found. GreB differs functionally in that it releases larger oligonucleotides. This model describes proteobacterial GreB.
Probab=31.00 E-value=2.1e+02 Score=22.80 Aligned_cols=56 Identities=14% Similarity=0.176 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHh--------HHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 042014 92 LDELWSQVVWLR-NENHQLVDKLNHVSG--------CHDKVIQENAELKVEATELRQMLTDLQLN 147 (169)
Q Consensus 92 leeLe~qV~~L~-~eN~~L~~~l~~l~~--------~~~~l~~EN~~Lr~e~~~Lr~~L~~l~~~ 147 (169)
++.|+.++.+|. .+-.++..++..... .++....+-..|...+..|..+|...++-
T Consensus 10 ~~~L~~El~~L~~~~r~~~~~~i~~Ar~~GDlsENaeY~aak~~~~~le~rI~~L~~~L~~A~ii 74 (156)
T TIGR01461 10 YEKLKQELNYLWREERPEVTQKVTWAASLGDRSENADYQYGKKRLREIDRRVRFLTKRLENLKVV 74 (156)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHcCCcchhhhhHHHHHHHHHHHHHHHHHHHHHhcCEEe
Confidence 445666666665 345555555554432 23344445557777888888888776664
No 436
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=30.97 E-value=2.3e+02 Score=21.15 Aligned_cols=55 Identities=24% Similarity=0.222 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 89 QKHLDELWSQVVWLRNENHQLVDKLNHV--SGCHDKVIQENAELKVEATELRQMLTD 143 (169)
Q Consensus 89 q~~leeLe~qV~~L~~eN~~L~~~l~~l--~~~~~~l~~EN~~Lr~e~~~Lr~~L~~ 143 (169)
+..++.|..++......-..+-.++..+ ....+.+.-+=..++.++..+...|..
T Consensus 34 ~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~ 90 (106)
T PF10805_consen 34 REDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQG 90 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4444455444444443333344444443 333444444444444444444444443
No 437
>PF09727 CortBP2: Cortactin-binding protein-2; InterPro: IPR019131 This entry represents a N-terminal domain found in cortactin-binding protein 2 and in filamin A interacting protein 1 (Filip1). In addition to being a positional candidate for autism, cortactin-binding protein 2 is expressed at highest levels in the brain in humans. Towards the C-terminal end of this protein are a series of proline-rich regions which are likely to be the points of interaction with the SH3 domain of cortactin. The human protein has six associated ankyrin repeat domains (IPR002110 from INTERPRO) towards the C terminus of the protein which act as protein-protein interaction domains []. Filip1 controls the start of neocortical cell migration from the ventricular zone by acting through a filamin-A/F-actin axis. It may be able to induce the degradation of Filamin A [, ].
Probab=30.85 E-value=3.3e+02 Score=23.00 Aligned_cols=72 Identities=22% Similarity=0.325 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 042014 66 INERKQRRMISNRESARRSRMRKQKHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQM 140 (169)
Q Consensus 66 ~deRR~RR~isNRESARRSR~RKq~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~ 140 (169)
.-|++.||.+.--+--+|....=.+.-++. +.-|+.|-..|...+..=..+...++.|+..+-..+.+=+.+
T Consensus 106 ~aE~rhrr~i~eLe~EKrkh~~~~aqgDD~---t~lLEkEReRLkq~lE~Ek~~~~~~EkE~~K~~~~l~eE~~k 177 (192)
T PF09727_consen 106 AAEKRHRRTIQELEEEKRKHAEDMAQGDDF---TNLLEKERERLKQQLEQEKAQQKKLEKEHKKLVSQLEEERTK 177 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccchH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555444333322233332 345777777788888777778888888887665555444333
No 438
>PF11500 Cut12: Spindle pole body formation-associated protein; InterPro: IPR021589 This is the central coiled-coil region of cut12 also found in other fungi, barring S. cerevisiae. The full protein has two predicted coiled-coil regions, and one consensus phosphorylation site for p34cdc2 and two for MAP kinase. During Schizosaccharomyces japonicus yFS275 mitosis, the duplicated spindle pole bodies (SPBs) nucleate microtubule arrays that interdigitate to form the mitotic spindle. Cut12 is localised to the SPB throughout the cell cycle, predominantly around the inner face of the interphase SPB, adjacent to the nucleus []. Cut12 associates with Fin1 and is important in this context for the activity of Plo1 [].
Probab=30.61 E-value=3e+02 Score=22.44 Aligned_cols=53 Identities=9% Similarity=0.151 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042014 66 INERKQRRMISNRESARRSRMRKQKHLDELWSQVVWLRNENHQLVDKLNHVSG 118 (169)
Q Consensus 66 ~deRR~RR~isNRESARRSR~RKq~~leeLe~qV~~L~~eN~~L~~~l~~l~~ 118 (169)
.-++..+++++.|..|+-.=++|-....+|..++..-+....++...|..+..
T Consensus 81 ~a~~Em~KLi~yk~~aKsyAkkKD~Ea~~L~~KLkeEq~kv~~ME~~v~elas 133 (152)
T PF11500_consen 81 KAEKEMEKLIKYKQLAKSYAKKKDAEAMRLAEKLKEEQEKVAEMERHVTELAS 133 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556788889999999998899999999988877766666666655555443
No 439
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=30.58 E-value=1.7e+02 Score=26.01 Aligned_cols=52 Identities=17% Similarity=0.187 Sum_probs=36.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 042014 68 ERKQRRMISNRESARRSRMRKQKHLDELWSQVVWLRNENHQLVDKLNHVSGC 119 (169)
Q Consensus 68 eRR~RR~isNRESARRSR~RKq~~leeLe~qV~~L~~eN~~L~~~l~~l~~~ 119 (169)
-|..|+++.+....=..+.-.-..+..|+.++..++.++...-.+|..+.++
T Consensus 143 ~R~~r~~l~d~I~kLk~k~P~s~kl~~LeqELvraEae~lvaEAqL~n~kR~ 194 (271)
T PF13805_consen 143 SRDRRRKLQDEIAKLKYKDPQSPKLVVLEQELVRAEAENLVAEAQLSNIKRQ 194 (271)
T ss_dssp HHHHHHHHHHHHHHHHHH-TTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhhHHHHHHHHhhHH
Confidence 4566667777775433333333478999999999999998888778777654
No 440
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=30.52 E-value=5.5e+02 Score=27.68 Aligned_cols=51 Identities=25% Similarity=0.314 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 86 MRKQKHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTD 143 (169)
Q Consensus 86 ~RKq~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~ 143 (169)
.+++..++.++..+..+..+-.+. ...+..+..+-..|+..+.++|+++.+
T Consensus 538 ~e~~~~l~~~k~~l~~~k~e~~~~-------~k~l~~~~~e~~~~~~~~~~~rqrveE 588 (1293)
T KOG0996|consen 538 KEKKTELDDLKEELPSLKQELKEK-------EKELPKLRKEERNLKSQLNKLRQRVEE 588 (1293)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHH-------HHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444443333 333344444444444444444444443
No 441
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=30.52 E-value=3.9e+02 Score=25.41 Aligned_cols=57 Identities=18% Similarity=0.198 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042014 89 QKHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTDLQ 145 (169)
Q Consensus 89 q~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l~ 145 (169)
.+|++-|...+.+....-..+...+..+.++...+..+=..|.-++..|.++-..|+
T Consensus 431 prYvdrl~~~L~qk~~~~~k~~~~~~~l~~kr~e~~~e~~~l~pkL~~l~~~Tr~Lq 487 (507)
T PF05600_consen 431 PRYVDRLVESLQQKLKQEEKLRRKREDLEEKRQEAQEEQQELEPKLDALVERTRELQ 487 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 478888888888888877888888888887777777777777776666666655555
No 442
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=30.51 E-value=4.1e+02 Score=24.05 Aligned_cols=31 Identities=16% Similarity=0.359 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 87 RKQKHLDELWSQVVWLRNENHQLVDKLNHVS 117 (169)
Q Consensus 87 RKq~~leeLe~qV~~L~~eN~~L~~~l~~l~ 117 (169)
|.++.+++-..++..|..||+.|...++.+.
T Consensus 50 KQKqK~e~ek~e~s~LkREnq~l~e~c~~le 80 (307)
T PF10481_consen 50 KQKQKVEEEKNEYSALKRENQSLMESCENLE 80 (307)
T ss_pred HHHHHHHHHhhhhhhhhhhhhhHHHHHHHHH
Confidence 3334445555667777777777766655553
No 443
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=30.31 E-value=4.6e+02 Score=25.03 Aligned_cols=62 Identities=21% Similarity=0.118 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 042014 79 ESARRSRMRKQKHLDELWS-----QVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQM 140 (169)
Q Consensus 79 ESARRSR~RKq~~leeLe~-----qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~ 140 (169)
+-|-+-+..-+++++.|+. +++++..+-..|..+-..+.+++..++.++..|-.++.+++.+
T Consensus 153 ~~~~~e~~~Y~~~l~~Le~~~~~~~~~~~~~e~~~l~~eE~~L~q~lk~le~~~~~l~~~l~e~~~~ 219 (447)
T KOG2751|consen 153 EDAEDEVDTYKACLQRLEQQNQDVSEEDLLKELKNLKEEEERLLQQLEELEKEEAELDHQLKELEFK 219 (447)
T ss_pred HHHHHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666777777765 3455555555666665666666666666666666666555543
No 444
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=30.25 E-value=4.9e+02 Score=24.86 Aligned_cols=65 Identities=18% Similarity=0.166 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042014 80 SARRSRMRKQKHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTDLQ 145 (169)
Q Consensus 80 SARRSR~RKq~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l~ 145 (169)
..++....+...+.+.+.....+......+. .+..+.+.+..+..+=..++.+...+...+..++
T Consensus 23 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~ 87 (475)
T PRK10361 23 ASYQHAQQKAEQLAEREEMVAELSAAKQQIT-QSEHWRAECELLNNEVRSLQSINTSLEADLREVT 87 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 445
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=30.15 E-value=3.9e+02 Score=23.61 Aligned_cols=25 Identities=28% Similarity=0.287 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 91 HLDELWSQVVWLRNENHQLVDKLNH 115 (169)
Q Consensus 91 ~leeLe~qV~~L~~eN~~L~~~l~~ 115 (169)
.+.+|+.+++.+..+...+..++..
T Consensus 35 ~~~~l~~~~~~~~~~~~~~~~~~~~ 59 (378)
T TIGR01554 35 EKEELETDVEKLKEEIKLLEDAIAD 59 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556665555555555444433
No 446
>PHA02562 46 endonuclease subunit; Provisional
Probab=30.06 E-value=4.4e+02 Score=24.17 Aligned_cols=63 Identities=21% Similarity=0.166 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 81 ARRSRMRKQKHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTD 143 (169)
Q Consensus 81 ARRSR~RKq~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~ 143 (169)
..+-....+..+.+++.++..++..-..+..+...+......+..++..+..++..+...|.+
T Consensus 328 ~~~~~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~ 390 (562)
T PHA02562 328 IMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDK 390 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHH
Confidence 333333344444455444444444444444444444444444444444444444444444443
No 447
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=29.87 E-value=4.3e+02 Score=24.07 Aligned_cols=51 Identities=20% Similarity=0.171 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042014 95 LWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTDLQ 145 (169)
Q Consensus 95 Le~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l~ 145 (169)
|..|+..|..+-...+.++..+++++.....-...+..++.++...|...+
T Consensus 264 iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK 314 (359)
T PF10498_consen 264 INNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVK 314 (359)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 344677777777777777888877777777777777777777776665544
No 448
>cd07591 BAR_Rvs161p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 161 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 161 (Rvs161p) and Schizosaccharomyces pombe Hob3 (homolog of Bin3). S. cerevisiae Rvs161p plays a role in regulating cell polarity, actin cytoskeleton polarization, vesicle trafficking, endocytosis, bud formation, and the mating response. It forms a heterodimer with another BAR domain protein Rvs167p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. S. pombe Hob3 is important in regulating filamentous actin localization an
Probab=29.86 E-value=3e+02 Score=23.13 Aligned_cols=57 Identities=19% Similarity=0.177 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 042014 83 RSRMRKQKHLDELWSQVVWLRNEN----HQLVDKLNHVSGCHDKVIQENAELKVEATELRQ 139 (169)
Q Consensus 83 RSR~RKq~~leeLe~qV~~L~~eN----~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~ 139 (169)
.-|.+|+--.+.+..+|..|.... ..|..--..+...-..-..=|..|++++..|-.
T Consensus 116 kKR~~KllDYD~~~~k~~kl~~K~~kd~~kL~kae~el~~a~~~Ye~lN~~Lk~ELP~l~~ 176 (224)
T cd07591 116 KKRNHKLLDYDAARAKVRKLIDKPSEDPTKLPRAEKELDEAKEVYETLNDQLKTELPQLVD 176 (224)
T ss_pred HHHHhhHhhHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 446677777888888888776432 222222222222333344559999999887765
No 449
>cd07599 BAR_Rvs167p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 167 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 167 (Rvs167p) and Schizosaccharomyces pombe Hob1 (homolog of Bin1). S. cerevisiae Rvs167p plays a role in regulation of the actin cytoskeleton, endocytosis, and sporulation. It forms a heterodimer with another BAR domain protein Rvs161p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. Rvs167p also interacts with the GTPase activating protein (GAP) Gyp5p, which is involved in ER to Golgi vesicle trafficking. BAR domains fo
Probab=29.72 E-value=3.1e+02 Score=22.34 Aligned_cols=61 Identities=20% Similarity=0.213 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHH-------HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 82 RRSRMRKQKHLDELWSQVVW-LRN-------ENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLT 142 (169)
Q Consensus 82 RRSR~RKq~~leeLe~qV~~-L~~-------eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~ 142 (169)
=+-|.+|.--.+.+..++.. +.. ++..|..--..+...-.....-|..|+.++..|-....
T Consensus 116 IkKR~~k~lDyd~~~~k~~k~~~~k~~~~~kd~~kl~kae~~l~~a~~~y~~lN~~Lk~eLP~l~~~~~ 184 (216)
T cd07599 116 IKKRDHKKLDYDKLQNKLNKLLQKKKELSLKDEKQLAKLERKLEEAKEEYEALNELLKSELPKLLALAD 184 (216)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 34466777778888888877 433 23334333334444444556669999999988766543
No 450
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=29.56 E-value=2.8e+02 Score=21.79 Aligned_cols=52 Identities=19% Similarity=0.259 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042014 94 ELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTDLQ 145 (169)
Q Consensus 94 eLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l~ 145 (169)
.|+.=-+.|.....+|..+|+.|-.++++..+-....+.++.+++.-+..+.
T Consensus 51 ql~~vs~~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~ 102 (126)
T PF07889_consen 51 QLEQVSESLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIG 102 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHH
No 451
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=29.48 E-value=5e+02 Score=24.72 Aligned_cols=83 Identities=11% Similarity=0.200 Sum_probs=55.4
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc---C
Q 042014 72 RRMISNRESARRSRMRKQKHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTDLQLN---S 148 (169)
Q Consensus 72 RR~isNRESARRSR~RKq~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l~~~---~ 148 (169)
..+.+.-+.....-..++.-...+...+..+...-..+..+...+...+..+..+-..-|..+..+...|..+.+. +
T Consensus 354 ~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~lek~ 433 (560)
T PF06160_consen 354 KELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLEKS 433 (560)
T ss_pred HHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3344444444444444555566667777777777777777777777777788888888888888888888777653 5
Q ss_pred CCCCCC
Q 042014 149 HYSSLK 154 (169)
Q Consensus 149 ~~~~~~ 154 (169)
.+|.+|
T Consensus 434 nLPGlp 439 (560)
T PF06160_consen 434 NLPGLP 439 (560)
T ss_pred CCCCCC
Confidence 566553
No 452
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=29.16 E-value=4.3e+02 Score=23.80 Aligned_cols=65 Identities=20% Similarity=0.319 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042014 81 ARRSRMRKQKHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTDLQ 145 (169)
Q Consensus 81 ARRSR~RKq~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l~ 145 (169)
++..-..-..++.+|-+++..++.+-..+..++..+.++.+..-.+=-.+-.++.++|...-.|+
T Consensus 149 ~~~k~~e~~~~~~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~h 213 (294)
T COG1340 149 DAKKALEENEKLKELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELH 213 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 453
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=29.12 E-value=2.8e+02 Score=21.68 Aligned_cols=49 Identities=12% Similarity=0.111 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 042014 87 RKQKHLDELWSQVVWLRNEN-HQLVDKLNHVSGCHDKVIQENAELKVEAT 135 (169)
Q Consensus 87 RKq~~leeLe~qV~~L~~eN-~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~ 135 (169)
.....+..|+.....|..+. ..++.++..|.-.+..+..-+..+|..+.
T Consensus 59 ~~~~~~~~l~~~~~kl~~E~~~~~q~EldDLL~ll~Dle~K~~kyk~rLk 108 (136)
T PF04871_consen 59 ELASEVKELEAEKEKLKEEARKEAQSELDDLLVLLGDLEEKRKKYKERLK 108 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHH
Confidence 34444445555455554443 34455555544444444444444433333
No 454
>PF04375 HemX: HemX; InterPro: IPR007470 The majority of proteins in this family are annotated as uroporphyrin-III C-methyltransferase (2.1.1.107 from EC) []; however, there is no direct evidence to support this annotation for these proteins, which come from mainly pathogenic Gram-negative organisms. There is some evidence to suggest that the proteins are membrane anchored as they have a predicted N-terminal signal peptide and transmembrane domain and may be involved in haem transport [].
Probab=29.00 E-value=4.3e+02 Score=23.77 Aligned_cols=57 Identities=26% Similarity=0.256 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHH-----HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 042014 91 HLDELWSQVVWLRNENH-----QLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTDLQLN 147 (169)
Q Consensus 91 ~leeLe~qV~~L~~eN~-----~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l~~~ 147 (169)
.+..|+.++..+..... .+........+....+..+...+..++..+++++..+...
T Consensus 61 ~~~~L~~ql~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~l~~l~~~~~~l~~~ 122 (372)
T PF04375_consen 61 QLQALQQQLQQLQQQLEAQQAQQLRQLQKQQQEQLQQLQQELAQLQQQLAELQQQLAALSQR 122 (372)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34455555555554333 2333333344445566666667777777777777666543
No 455
>PF02646 RmuC: RmuC family; InterPro: IPR003798 This protein contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures []. Proteins in this family are predicted to contain a central endonuclease-like fold domain, surrounded by coiled coils, consistent with a direct role in DNA cleavage [, ].
Probab=28.97 E-value=3.6e+02 Score=23.53 Aligned_cols=29 Identities=21% Similarity=0.307 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Q 042014 89 QKHLDELWSQVVWLRNEN---HQLVDKLNHVS 117 (169)
Q Consensus 89 q~~leeLe~qV~~L~~eN---~~L~~~l~~l~ 117 (169)
.+....|..++..|...| ..|...+..|.
T Consensus 30 ~~~~~~L~~~l~~l~~~~~~~~~l~~~~~~L~ 61 (304)
T PF02646_consen 30 SEEFGSLKEQLKQLSEANGEIQQLSQEASNLT 61 (304)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 344566666666666666 55555554443
No 456
>cd07612 BAR_Bin2 The Bin/Amphiphysin/Rvs (BAR) domain of Bridging integrator 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Bridging integrator 2 (Bin2) is a BAR domain containing protein that is mainly expressed in hematopoietic cells. It is upregulated during granulocyte differentiation and is thought to function primarily in this lineage. The BAR domain of Bin2 is closely related to the BAR domains of amphiphysins, which function primarily in endocytosis and other membrane remodeling events. Amphiphysins contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. Unlike amphiphysins, Bin2 does not appear to contain a C-terminal SH3 domain. Amphiphysin I proteins, enriched in the brain and nervous system, function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (
Probab=28.91 E-value=3.6e+02 Score=22.93 Aligned_cols=54 Identities=20% Similarity=0.160 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 042014 85 RMRKQKHLDELWSQVVWLRNENH----QLVDKLNHVSGCHDKVIQENAELKVEATELR 138 (169)
Q Consensus 85 R~RKq~~leeLe~qV~~L~~eN~----~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr 138 (169)
|.+|+--.+....++..|+..-. .|..--+.+...-..-..=|..|+.|+..|-
T Consensus 113 R~~KllDYD~~R~~~~kl~~k~~kD~~KL~kAe~el~~Ak~~ye~lN~~L~~ELP~L~ 170 (211)
T cd07612 113 RGRKLVDYDSARHHLEALQNAKKKDDAKIAKAEEEFNRAQVVFEDINRELREELPILY 170 (211)
T ss_pred HHHHHhhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777778888888865322 2333333333333344555999999988775
No 457
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=28.69 E-value=2.5e+02 Score=27.20 Aligned_cols=55 Identities=22% Similarity=0.210 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042014 90 KHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTDL 144 (169)
Q Consensus 90 ~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l 144 (169)
.++++.-.+++.+...-.....++..+...++.++.+|..|..+....+..+.+|
T Consensus 37 ~~ld~a~~e~d~le~~l~~y~~~L~~~~~di~~IE~qn~~Lqvq~~N~k~L~~eL 91 (701)
T PF09763_consen 37 EYLDEALAECDELESWLSLYDVELNSVRDDIEYIESQNNGLQVQSANQKLLLNEL 91 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHH
Confidence 4566666666666666666666677777777777777776666655444444443
No 458
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=28.58 E-value=4.6e+02 Score=23.92 Aligned_cols=36 Identities=25% Similarity=0.276 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCCCC-CCCCC
Q 042014 123 VIQENAELKVEATELRQMLTDLQLNSHYSSL-KDLDD 158 (169)
Q Consensus 123 l~~EN~~Lr~e~~~Lr~~L~~l~~~~~~~~~-~~l~~ 158 (169)
+..+=..++.++..++..|...+....+..+ -++++
T Consensus 289 ~~~~l~~~~~~l~~~~~~l~~a~~~l~~~~I~AP~dG 325 (457)
T TIGR01000 289 VKQEITDLNQKLLELESKIKSLKEDSQKGVIKAPEDG 325 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCEEECCCCe
Confidence 3444455566666666666666665555554 47776
No 459
>PF06216 RTBV_P46: Rice tungro bacilliform virus P46 protein; InterPro: IPR009347 This family consists of several Rice tungro bacilliform virus P46 proteins. The function of this family is unknown.
Probab=28.23 E-value=1.8e+02 Score=26.27 Aligned_cols=41 Identities=15% Similarity=0.162 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 042014 85 RMRKQKHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQ 125 (169)
Q Consensus 85 R~RKq~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~ 125 (169)
|.--+.....|..||..|+..|..++.++....+.+..|..
T Consensus 73 ~~sy~~e~~~l~~qvs~l~~~~~~~r~~~~~~~~~~eglre 113 (389)
T PF06216_consen 73 RQSYSNEWISLNDQVSHLQHQNSEQRQQIREMREIIEGLRE 113 (389)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
No 460
>PF13942 Lipoprotein_20: YfhG lipoprotein
Probab=28.17 E-value=2.8e+02 Score=23.33 Aligned_cols=38 Identities=16% Similarity=0.141 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 042014 88 KQKHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQ 125 (169)
Q Consensus 88 Kq~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~ 125 (169)
-++-...-..++..|+.++..|+.+++..++++..|..
T Consensus 121 y~rLQqssD~~lD~Lr~qq~~Lq~qL~~T~RKLEnLTD 158 (179)
T PF13942_consen 121 YQRLQQSSDSELDALRQQQQRLQYQLDTTTRKLENLTD 158 (179)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 33344455678888888888888888877776655443
No 461
>PLN02678 seryl-tRNA synthetase
Probab=28.11 E-value=3.9e+02 Score=25.13 Aligned_cols=56 Identities=23% Similarity=0.232 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042014 90 KHLDELWSQVVWLRNENHQLVDKLNHVS---GCHDKVIQENAELKVEATELRQMLTDLQ 145 (169)
Q Consensus 90 ~~leeLe~qV~~L~~eN~~L~~~l~~l~---~~~~~l~~EN~~Lr~e~~~Lr~~L~~l~ 145 (169)
+..-+|..+++.|+.+-..+.+++..+. +....+.++=..|++++..|...+..++
T Consensus 40 ~~~r~l~~~~e~lr~erN~~sk~I~~~k~~~~~~~~l~~~~~~Lk~ei~~le~~~~~~~ 98 (448)
T PLN02678 40 KEWRQRQFELDSLRKEFNKLNKEVAKLKIAKEDATELIAETKELKKEITEKEAEVQEAK 98 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
No 462
>PHA00728 hypothetical protein
Probab=28.08 E-value=77 Score=25.50 Aligned_cols=21 Identities=33% Similarity=0.495 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 042014 97 SQVVWLRNENHQLVDKLNHVS 117 (169)
Q Consensus 97 ~qV~~L~~eN~~L~~~l~~l~ 117 (169)
.+|++|+.||.+|.+++..+.
T Consensus 5 teveql~keneelkkkla~le 25 (151)
T PHA00728 5 TEVEQLKKENEELKKKLAELE 25 (151)
T ss_pred hHHHHHHHhHHHHHHHHHHHH
Confidence 457778888888777776554
No 463
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=27.92 E-value=5.7e+02 Score=27.20 Aligned_cols=70 Identities=19% Similarity=0.234 Sum_probs=35.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 74 MISNRESARRSRMRKQKHLDELWSQVV-------WLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTD 143 (169)
Q Consensus 74 ~isNRESARRSR~RKq~~leeLe~qV~-------~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~ 143 (169)
+..-++.+.+--..|-.++.+|+..+. .+-+++..+..++..+...-..+-.|-..|+..+..+...|..
T Consensus 416 lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~l~~~i~~~~~dl~~ 492 (1200)
T KOG0964|consen 416 LQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWREEKKLRSLIANLEEDLSR 492 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555544443 4444444444555555544455555556666666666655543
No 464
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=27.56 E-value=3.5e+02 Score=22.33 Aligned_cols=50 Identities=6% Similarity=0.081 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 042014 90 KHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQ 139 (169)
Q Consensus 90 ~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~ 139 (169)
..+..|+.++..++.....|...+..|..++..+...=..|.+.....+.
T Consensus 99 ~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a 148 (219)
T TIGR02977 99 ELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAASS 148 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666777777777777777777776666666555555554444443
No 465
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=27.55 E-value=3.6e+02 Score=27.72 Aligned_cols=25 Identities=20% Similarity=0.436 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 042014 120 HDKVIQENAELKVEATELRQMLTDL 144 (169)
Q Consensus 120 ~~~l~~EN~~Lr~e~~~Lr~~L~~l 144 (169)
+..+..+-.+|+.....||+.+..|
T Consensus 232 l~~~~~~k~rl~~d~E~Lr~e~~qL 256 (916)
T KOG0249|consen 232 LEEMRHDKDKLRTDIEDLRGELDQL 256 (916)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 3333333334444444444444433
No 466
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=27.51 E-value=1.1e+02 Score=24.10 Aligned_cols=22 Identities=23% Similarity=0.231 Sum_probs=13.2
Q ss_pred HHHHhHHHHHHHHHHHHHHHHH
Q 042014 114 NHVSGCHDKVIQENAELKVEAT 135 (169)
Q Consensus 114 ~~l~~~~~~l~~EN~~Lr~e~~ 135 (169)
+.|..++..|.-||..||.++.
T Consensus 6 EeLaaeL~kLqmENk~LKkkl~ 27 (118)
T PF05812_consen 6 EELAAELQKLQMENKALKKKLR 27 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455566677777766553
No 467
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=27.35 E-value=4.7e+02 Score=27.73 Aligned_cols=32 Identities=25% Similarity=0.224 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 042014 88 KQKHLDELWSQVVWLRNENHQLVDKLNHVSGC 119 (169)
Q Consensus 88 Kq~~leeLe~qV~~L~~eN~~L~~~l~~l~~~ 119 (169)
|+..+.+|....+.|..+...+-..|..+.++
T Consensus 408 k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQ 439 (1243)
T KOG0971|consen 408 KNSELEELRRQKERLSRELDQAESTIADLKEQ 439 (1243)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444333344444443
No 468
>PF06424 PRP1_N: PRP1 splicing factor, N-terminal; InterPro: IPR010491 This domain is specific to the N-terminal part of the prp1 splicing factor, which is involved in mRNA splicing (and possibly also poly(A)+ RNA nuclear export and cell cycle progression). This domain is specific to the N terminus of the RNA splicing factor encoded by prp1 []. It is involved in mRNA splicing and possibly also poly(A)and RNA nuclear export and cell cycle progression.; GO: 0000398 nuclear mRNA splicing, via spliceosome, 0005634 nucleus
Probab=27.33 E-value=84 Score=25.01 Aligned_cols=28 Identities=11% Similarity=0.137 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 042014 95 LWSQVVWLRNENHQLVDKLNHVSGCHDK 122 (169)
Q Consensus 95 Le~qV~~L~~eN~~L~~~l~~l~~~~~~ 122 (169)
+..++...+.+|..+..++..|.+.+..
T Consensus 88 ~~~e~e~~~~~~pkI~~QFaDLKR~La~ 115 (133)
T PF06424_consen 88 EKEEIEKYRKENPKIQQQFADLKRSLAT 115 (133)
T ss_pred hhhHHHhhhccCchHHHHHHHHHHHHcc
Confidence 3444444555555555555544444433
No 469
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=27.21 E-value=1.8e+02 Score=30.08 Aligned_cols=58 Identities=16% Similarity=0.038 Sum_probs=39.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHhHHHHHHHHHHHHHH
Q 042014 73 RMISNRESARRSRMRKQKHLDELWSQVVWLRNENHQLV-----DKLNHVSGCHDKVIQENAELKV 132 (169)
Q Consensus 73 R~isNRESARRSR~RKq~~leeLe~qV~~L~~eN~~L~-----~~l~~l~~~~~~l~~EN~~Lr~ 132 (169)
|.|+|.-.+.. +.+..++..|..|+..|+.++.... .+++.+..+...+...|..|..
T Consensus 315 k~iknk~vvN~--d~~~~~~~~lK~ql~~l~~ell~~~~~~~~~ei~sl~~e~~~l~~~~d~~~~ 377 (913)
T KOG0244|consen 315 KQIKNKPVVNQ--DPKSFEMLKLKAQLEPLQVELLSKAGDELDAEINSLPFENVTLEETLDALLQ 377 (913)
T ss_pred HHhcccccccc--cHHHHHHHHHHHHHHHHHHHHHhhccccchhHHhhhhhhhhhhhhhHHHHhc
Confidence 45666666655 8999999999999999999988775 4555555444444444444433
No 470
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=27.14 E-value=4.8e+02 Score=23.73 Aligned_cols=72 Identities=22% Similarity=0.196 Sum_probs=43.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-------HHHHHHHHHHHHHhhh
Q 042014 75 ISNRESARRSRMRKQKHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAEL-------KVEATELRQMLTDLQL 146 (169)
Q Consensus 75 isNRESARRSR~RKq~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~L-------r~e~~~Lr~~L~~l~~ 146 (169)
+|--+--..++++-.++--+|-.--..|+...+.+..+++.+..++..+..+-+.| |.|+..+|++|..|+.
T Consensus 83 ls~~~~~~~~~~~aa~Rplel~e~Ekvlk~aIq~i~~~~q~~~~~Lnnvasdea~L~~Kierrk~ElEr~rkRle~Lqs 161 (338)
T KOG3647|consen 83 LSKELLHKESLMSAAQRPLELLEVEKVLKSAIQAIQVRLQSSRAQLNNVASDEAALGSKIERRKAELERTRKRLEALQS 161 (338)
T ss_pred HHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33334444555555555555544445566666666666666666665555554444 5667778888888874
No 471
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=27.08 E-value=3.7e+02 Score=22.37 Aligned_cols=55 Identities=16% Similarity=0.201 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 042014 92 LDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTDLQL 146 (169)
Q Consensus 92 leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l~~ 146 (169)
+++|+.++......-..+...+......+..+..-=..+...+.+.++++..+..
T Consensus 80 ~~eLeq~l~~~~~~L~~~q~~l~~~~~~l~~~~~~p~~aq~~l~~~~~~l~ei~~ 134 (240)
T PF12795_consen 80 LEELEQRLSQEQAQLQELQEQLQQENSQLIEIQTRPERAQQQLSEARQRLQEIRN 134 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666665555555555555555555555556666667777777766553
No 472
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=27.03 E-value=2.3e+02 Score=19.91 Aligned_cols=14 Identities=29% Similarity=0.356 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHH
Q 042014 128 AELKVEATELRQML 141 (169)
Q Consensus 128 ~~Lr~e~~~Lr~~L 141 (169)
..|..++.++...|
T Consensus 86 ~~l~~~l~~~~~~l 99 (106)
T PF01920_consen 86 KYLEKKLKELKKKL 99 (106)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333344444333
No 473
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=27.01 E-value=2.1e+02 Score=19.52 Aligned_cols=32 Identities=25% Similarity=0.392 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 042014 100 VWLRNENHQLVDKLNHVSGCHDKVIQENAELKV 132 (169)
Q Consensus 100 ~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~ 132 (169)
.-|+.-|..|..+.... +....|..+|.+|+.
T Consensus 23 ~~l~rY~~vL~~R~~l~-~e~~~L~~qN~eLr~ 54 (60)
T PF14775_consen 23 NFLKRYNKVLLDRAALI-QEKESLEQQNEELRS 54 (60)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 34555666666654432 223444455554443
No 474
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=26.99 E-value=1.6e+02 Score=19.66 Aligned_cols=21 Identities=24% Similarity=0.276 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 042014 93 DELWSQVVWLRNENHQLVDKL 113 (169)
Q Consensus 93 eeLe~qV~~L~~eN~~L~~~l 113 (169)
+.|..||..|+.+...|+..+
T Consensus 2 ~aLrqQv~aL~~qv~~Lq~~f 22 (46)
T PF09006_consen 2 NALRQQVEALQGQVQRLQAAF 22 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555544444433
No 475
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=26.80 E-value=2e+02 Score=20.43 Aligned_cols=23 Identities=26% Similarity=0.346 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 042014 92 LDELWSQVVWLRNENHQLVDKLN 114 (169)
Q Consensus 92 leeLe~qV~~L~~eN~~L~~~l~ 114 (169)
+.||+.++.-|+.|...|..++.
T Consensus 27 V~El~eRIalLq~EIeRlkAe~~ 49 (65)
T COG5509 27 VAELEERIALLQAEIERLKAELA 49 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777777666666554
No 476
>COG5570 Uncharacterized small protein [Function unknown]
Probab=26.59 E-value=1.3e+02 Score=20.85 Aligned_cols=50 Identities=20% Similarity=0.161 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 042014 91 HLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQM 140 (169)
Q Consensus 91 ~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~ 140 (169)
|+.+|+.+-..|..+.++-.+.=..=-..+..|..---+||+++..|+.+
T Consensus 6 hl~eL~kkHg~le~ei~ea~n~Ps~dd~~i~eLKRrKL~lKeeIEkLka~ 55 (57)
T COG5570 6 HLAELEKKHGNLEREIQEAMNSPSSDDLAIRELKRRKLRLKEEIEKLKAQ 55 (57)
T ss_pred HHHHHHHhhchHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHhcc
No 477
>PF14916 CCDC92: Coiled-coil domain of unknown function
Probab=26.58 E-value=2.3e+02 Score=19.75 Aligned_cols=58 Identities=16% Similarity=0.209 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC-CCCCCCCCCCc
Q 042014 102 LRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTDLQLNSHYS-SLKDLDDVPCC 162 (169)
Q Consensus 102 L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l~~~~~~~-~~~~l~~~~~~ 162 (169)
|......+.+.|.-|++++..+.. .|.+|+..|+++..+++-.-.+. +...-+++.|+
T Consensus 1 l~~qv~s~e~~i~FLq~eH~~tL~---~LH~EIe~Lq~~~~dL~~kL~m~~~~~~~~~~s~~ 59 (60)
T PF14916_consen 1 LEQQVQSLEKSILFLQQEHAQTLK---GLHAEIERLQKRNKDLTFKLIMKQPSSSQDGSSSS 59 (60)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhccccceeeeecCCCCCCcccccc
No 478
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=26.55 E-value=3.2e+02 Score=21.47 Aligned_cols=67 Identities=10% Similarity=0.162 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042014 79 ESARRSRMRKQKHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTDLQ 145 (169)
Q Consensus 79 ESARRSR~RKq~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l~ 145 (169)
++-+..|+.=.++++.|..++++...-......++..+......+-.+=..+..-+..|..+|..++
T Consensus 57 ~~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie 123 (126)
T PF07889_consen 57 ESLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEIE 123 (126)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
No 479
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=26.55 E-value=6.9e+02 Score=25.37 Aligned_cols=76 Identities=25% Similarity=0.219 Sum_probs=0.0
Q ss_pred HHHHHHHhHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 042014 70 KQRRMISNRESAR-------------RSRMRKQKHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATE 136 (169)
Q Consensus 70 R~RR~isNRESAR-------------RSR~RKq~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~ 136 (169)
++=|-++||-+|. ++|.+=...+..|......|+.+-..-...+..+..++......=.....+...
T Consensus 481 qqLReERdRl~aeLqlSa~liqqeV~~ArEqgeaE~~~Lse~aqqLE~~Lq~~qe~la~l~~QL~~Ar~~lqes~eea~~ 560 (739)
T PF07111_consen 481 QQLREERDRLDAELQLSARLIQQEVGRAREQGEAERQQLSEVAQQLEQELQEKQESLAELEEQLEAARKSLQESTEEAAE 560 (739)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q ss_pred HHHHHHHhh
Q 042014 137 LRQMLTDLQ 145 (169)
Q Consensus 137 Lr~~L~~l~ 145 (169)
||..|.-.+
T Consensus 561 lR~EL~~QQ 569 (739)
T PF07111_consen 561 LRRELTQQQ 569 (739)
T ss_pred HHHHHHHHH
No 480
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=26.51 E-value=3.7e+02 Score=22.18 Aligned_cols=59 Identities=14% Similarity=0.124 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHhhhc
Q 042014 89 QKHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQE-NAELKVEATELRQMLTDLQLN 147 (169)
Q Consensus 89 q~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~E-N~~Lr~e~~~Lr~~L~~l~~~ 147 (169)
+..+++|+..++.|......+.+.++-+..++.+-..= =..|.+++.+|...+......
T Consensus 78 ~eelerLe~~iKdl~~lye~Vs~d~Npf~s~~~qes~~~veel~eqV~el~~i~emv~~d 137 (157)
T COG3352 78 KEELERLEENIKDLVSLYELVSRDFNPFMSKTPQESRGIVEELEEQVNELKMIVEMVIKD 137 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
No 481
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=26.22 E-value=6e+02 Score=28.51 Aligned_cols=72 Identities=17% Similarity=0.176 Sum_probs=0.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042014 74 MISNRESARRSRMRKQKHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTDLQ 145 (169)
Q Consensus 74 ~isNRESARRSR~RKq~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l~ 145 (169)
+-++|.-+..--.+.+...+.|...-..+..+-..|...+..+...+..+..+|..|..++..++..+.+++
T Consensus 92 ~~~~~~~l~~~~~~~~~~~~~l~~~~se~~~qkr~l~~~le~~~~ele~l~~~n~~l~~ql~ss~~~~~e~e 163 (1822)
T KOG4674|consen 92 LSSERSNLSWEIDALKLENSQLRRAKSELQEQKRQLMELLERQKAELEALESENKDLNDQLKSSTKTLSELE 163 (1822)
T ss_pred hhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 482
>cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX30 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=26.15 E-value=4.3e+02 Score=22.89 Aligned_cols=54 Identities=15% Similarity=0.164 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 042014 83 RSRMRKQKHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQ 139 (169)
Q Consensus 83 RSR~RKq~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~ 139 (169)
+.|..||..+++|...+..-+..-..|..+++.++... ++=|..+++++.....
T Consensus 153 K~RdqkQ~d~E~l~E~l~~rre~~~kLe~~ie~~~~~v---e~f~~~~~~E~~~Fe~ 206 (240)
T cd07667 153 KKRDQVQAEYEAKLEAVALRKEERPKVPTDVEKCQDRV---ECFNADLKADMERWQN 206 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
No 483
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=26.02 E-value=4.8e+02 Score=23.48 Aligned_cols=52 Identities=19% Similarity=0.237 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042014 93 DELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTDL 144 (169)
Q Consensus 93 eeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l 144 (169)
+.+-.++.+=-.+-..|..+++.+..+...+..+|...+..+..|...|..+
T Consensus 90 ~lml~RL~~EL~~Rk~L~~~~~el~~~k~~l~~~~~~k~~~L~~l~~~L~~l 141 (355)
T PF09766_consen 90 QLMLARLEFELEQRKRLEEQLKELEQRKKKLQQENKKKKKFLDSLPPQLKSL 141 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
No 484
>cd07590 BAR_Bin3 The Bin/Amphiphysin/Rvs (BAR) domain of Bridging integrator 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Bridging integrator 3 (Bin3) is widely expressed in many tissues except in the brain. It plays roles in regulating filamentous actin localization and in cell division. In humans, the Bin3 gene is located in chromosome 8p21.3, a region that is implicated in cancer suppression. Homozygous inactivation of the Bin3 gene in mice led to the development of cataracts and an increased likelihood of lymphomas during aging, suggesting a role for Bin3 in lens development and cancer suppression. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=25.99 E-value=3.1e+02 Score=23.34 Aligned_cols=58 Identities=17% Similarity=0.176 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhHHHHHHHH----HHHHHHHHHHH
Q 042014 80 SARRSRMRKQKHLDELWSQVVWLRNENHQLV--DKLNHVSGCHDKVIQE----NAELKVEATEL 137 (169)
Q Consensus 80 SARRSR~RKq~~leeLe~qV~~L~~eN~~L~--~~l~~l~~~~~~l~~E----N~~Lr~e~~~L 137 (169)
.|-.-|.+|..-.+.....|..|...-..=. .++....+.+.....+ |..|+.|+..|
T Consensus 112 ~~I~KR~~Kl~DYD~~r~~~~kl~~K~~k~~~~~KL~kae~el~~Ak~~ye~~N~~L~~ELP~l 175 (225)
T cd07590 112 AAIKRREQSLQEYERLQAKVEKLAEKEKTGPNLAKLEQAEKALAAARADFEKQNIKLLEELPKF 175 (225)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
No 485
>COG3264 Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]
Probab=25.96 E-value=2.8e+02 Score=28.50 Aligned_cols=57 Identities=18% Similarity=0.179 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042014 89 QKHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTDLQ 145 (169)
Q Consensus 89 q~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l~ 145 (169)
.++++..+++++.+..+|.+|.+-...+.+-...+.+....|+..+...+.++..++
T Consensus 71 sq~L~~~~~r~n~~~~dd~~l~~l~~ql~q~~r~i~eq~~~lr~sL~l~~~~~~q~~ 127 (835)
T COG3264 71 SQALNQQTERLNALASDDRQLANLLLQLLQSSRTIREQIAVLRGSLLLSRILLQQLG 127 (835)
T ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhc
No 486
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=25.90 E-value=5.2e+02 Score=23.75 Aligned_cols=74 Identities=26% Similarity=0.253 Sum_probs=0.0
Q ss_pred HHHHHhHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH----------HHHHHHHHHHHHHH
Q 042014 72 RRMISNRESARRSRMRK-----QKHLDELWSQVVWLRNENHQLVDKLNHVSGCHDK----------VIQENAELKVEATE 136 (169)
Q Consensus 72 RR~isNRESARRSR~RK-----q~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~----------l~~EN~~Lr~e~~~ 136 (169)
+-+..|.+-.+++=.+| -..+-+|..+...|..+-..|+.+.+.++.++.. +..+-..|++++.+
T Consensus 5 k~ir~n~~~v~~~l~~R~~~~~vd~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~ 84 (425)
T PRK05431 5 KLIRENPEAVKEALAKRGFPLDVDELLELDEERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKA 84 (425)
T ss_pred HHHHhCHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhh
Q 042014 137 LRQMLTDLQ 145 (169)
Q Consensus 137 Lr~~L~~l~ 145 (169)
+...+..+.
T Consensus 85 ~~~~~~~~~ 93 (425)
T PRK05431 85 LEAELDELE 93 (425)
T ss_pred HHHHHHHHH
No 487
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=25.89 E-value=4.9e+02 Score=26.76 Aligned_cols=80 Identities=16% Similarity=0.152 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cCCCCCCCCCCCCCCcchh
Q 042014 87 RKQKHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTDLQL-NSHYSSLKDLDDVPCCNAA 165 (169)
Q Consensus 87 RKq~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l~~-~~~~~~~~~l~~~~~~~~~ 165 (169)
+-|..++.|+.++..|..+-..++.+.+. +...+.-.+...+..+..-.+-..++.. ..++.+-++++-++..+-.
T Consensus 736 ~~qeE~~~l~~r~~~le~e~r~~k~~~~q---~lq~~ll~ve~~~k~~e~~~~~~~~lers~a~i~Ssp~~s~~~SgSne 812 (961)
T KOG4673|consen 736 AAQEEADTLEGRANQLEVEIRELKRKHKQ---ELQEVLLHVELIQKDLEREKASRLDLERSTARINSSPVSSQLPSGSNE 812 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhHHHHHHHHHHHHhhhCHHHHhhcccccCccCCCCchhhCCCCchH
Q ss_pred hhhC
Q 042014 166 DLLG 169 (169)
Q Consensus 166 ~~~~ 169 (169)
|.+|
T Consensus 813 e~ag 816 (961)
T KOG4673|consen 813 EIAG 816 (961)
T ss_pred hHhc
No 488
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=25.73 E-value=3.1e+02 Score=21.79 Aligned_cols=58 Identities=16% Similarity=0.209 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042014 87 RKQKHLDELWSQVVWLRNENHQLV-----DKLNHVSGCHDKVIQENAELKVEATELRQMLTDL 144 (169)
Q Consensus 87 RKq~~leeLe~qV~~L~~eN~~L~-----~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l 144 (169)
+.-....+|..++.+|+.|...+. .+-..+.++++.+..|-..++++...-+..+...
T Consensus 37 ~~~~~~~~l~~Ei~~l~~E~~~iS~qDeFAkwaKl~Rk~~kl~~el~~~~~~~~~~~~~~~~~ 99 (161)
T PF04420_consen 37 KSSKEQRQLRKEILQLKRELNAISAQDEFAKWAKLNRKLDKLEEELEKLNKSLSSEKSSFDKS 99 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTS-TTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 489
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=25.70 E-value=3.8e+02 Score=22.10 Aligned_cols=106 Identities=19% Similarity=0.178 Sum_probs=0.0
Q ss_pred cCCCCcCCCCCCCChHHHHHHhhhc------cHHHHHHHHHHHhHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Q 042014 40 NSQTSSFSSNNSTSDEAEEQQQQSM------IINERKQRRMISNRESARRSR-----MRKQKHLDELWSQVVWLRNENHQ 108 (169)
Q Consensus 40 ~~~~~~~s~~~s~sde~~eq~~~~~------~~deRR~RR~isNRESARRSR-----~RKq~~leeLe~qV~~L~~eN~~ 108 (169)
++.+.++++++..++++++...+-. ..+--|.++-+.-+.-|+++| +|=..-.++|+.-+.-.+.+...
T Consensus 9 ~~~~~~~~g~~~~~~~~e~~s~sals~f~AkEeeIErkKmeVrekVq~~LgrveEetkrLa~ireeLE~l~dP~RkEv~~ 88 (159)
T PF04949_consen 9 NSGSISFNGSSMMDDEDEEMSRSALSAFRAKEEEIERKKMEVREKVQAQLGRVEEETKRLAEIREELEVLADPMRKEVEM 88 (159)
T ss_pred cCCCCCCCCCcccchhHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhccchHHHHHH
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042014 109 LVDKLNHVSGCHDKVIQENAELKVEATELRQMLTDLQ 145 (169)
Q Consensus 109 L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l~ 145 (169)
++.+|..+..++..+..-=..=..+..+.-..+.+.+
T Consensus 89 vRkkID~vNreLkpl~~~cqKKEkEykealea~nEkn 125 (159)
T PF04949_consen 89 VRKKIDSVNRELKPLGQSCQKKEKEYKEALEAFNEKN 125 (159)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
No 490
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=25.59 E-value=5e+02 Score=23.38 Aligned_cols=64 Identities=17% Similarity=0.253 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042014 82 RRSRMRKQKHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTDLQ 145 (169)
Q Consensus 82 RRSR~RKq~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l~ 145 (169)
+.+.......-++|..++..+...-..|..++..+.+....+..+=..+-.++..++..-.++.
T Consensus 19 k~~~~e~~ekR~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein 82 (294)
T COG1340 19 KEEIEELKEKRDELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEIN 82 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 491
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=25.53 E-value=3.2e+02 Score=21.19 Aligned_cols=72 Identities=15% Similarity=0.187 Sum_probs=0.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 69 RKQRRMISNRESARRSRMRKQKHLDELWS-------QVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQML 141 (169)
Q Consensus 69 RR~RR~isNRESARRSR~RKq~~leeLe~-------qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L 141 (169)
+++.++...-+.+...-.+|++.++.|.. +|..|+.+...+...+..+...+..+ +..++.|+..+....
T Consensus 110 ~~R~~~~~~~~~~~~~l~~k~~~~~kl~~~~~~~~~ki~~l~~~i~~~e~~~~~~~~~~~~i---~~~~~~El~~f~~~~ 186 (218)
T cd07596 110 DDRADALLTLQSLKKDLASKKAQLEKLKAAPGIKPAKVEELEEELEEAESALEEARKRYEEI---SERLKEELKRFHEER 186 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Q ss_pred HH
Q 042014 142 TD 143 (169)
Q Consensus 142 ~~ 143 (169)
..
T Consensus 187 ~~ 188 (218)
T cd07596 187 AR 188 (218)
T ss_pred HH
No 492
>PRK11530 hypothetical protein; Provisional
Probab=25.48 E-value=1.7e+02 Score=24.72 Aligned_cols=32 Identities=19% Similarity=0.208 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 042014 97 SQVVWLRNENHQLVDKLNHVSGCHDKVIQENA 128 (169)
Q Consensus 97 ~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~ 128 (169)
.||.+|..+..+|..++..|..+.-+++.+|.
T Consensus 24 ~ev~ql~~~vs~LNqem~~Lt~qa~aleqQn~ 55 (183)
T PRK11530 24 SEVRQMHNSVSTLNQEMTQLTQQAVAIEQQNR 55 (183)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 493
>PHA02109 hypothetical protein
Probab=25.41 E-value=2.4e+02 Score=24.15 Aligned_cols=39 Identities=23% Similarity=0.256 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 042014 88 KQKHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQE 126 (169)
Q Consensus 88 Kq~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~E 126 (169)
|-+++.+|+.+++.|..|-.+++.++..+.+....-..|
T Consensus 191 ~L~~I~~L~~ki~~LS~E~~Q~~~Ki~N~R~~Vk~~LSE 229 (233)
T PHA02109 191 KLKQISELTIKLEALSDEACQVKHKILNLRAEVKRRLSE 229 (233)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 494
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=25.26 E-value=2e+02 Score=25.30 Aligned_cols=40 Identities=18% Similarity=0.203 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 042014 92 LDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELK 131 (169)
Q Consensus 92 leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr 131 (169)
++.|+.++.+|+.+...+..+++.+..+...+..+...++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 (364)
T TIGR01242 1 ISELDVRIRKLEDEKRSLEKEKIRLERELERLRSEIERLR 40 (364)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 495
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=25.19 E-value=8.6e+02 Score=25.99 Aligned_cols=79 Identities=18% Similarity=0.196 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042014 67 NERKQRRMISNRESARRSRMRKQKHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTDLQ 145 (169)
Q Consensus 67 deRR~RR~isNRESARRSR~RKq~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l~ 145 (169)
+.++..-.+.-...-..|++|.......|...+..+...-..+...+..+...+-....+=..+..++...+..|.+..
T Consensus 400 ~~~~~~elE~r~k~l~~sver~~~~~~~L~~~i~s~~~~~~e~~~d~~~l~~~~~~~~~~~~e~n~eL~~~~~ql~das 478 (1141)
T KOG0018|consen 400 ELERRAELEARIKQLKESVERLDKRRNKLAAKITSLSRSYEELKHDLDSLESLVSSAEEEPYELNEELVEVLDQLLDAS 478 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhh
No 496
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=25.10 E-value=2.3e+02 Score=24.91 Aligned_cols=39 Identities=18% Similarity=0.266 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042014 107 HQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTDLQ 145 (169)
Q Consensus 107 ~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l~ 145 (169)
..|..++..+.++...+..|...++.++..++.+|..++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 (364)
T TIGR01242 2 SELDVRIRKLEDEKRSLEKEKIRLERELERLRSEIERLR 40 (364)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 497
>KOG1691 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.99 E-value=2.7e+02 Score=23.96 Aligned_cols=50 Identities=10% Similarity=0.145 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 042014 88 KQKHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATEL 137 (169)
Q Consensus 88 Kq~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~L 137 (169)
|+..++-+|.++..|+.--..+..++.-|..+-..+...|..--..+.-+
T Consensus 132 Kkeklep~E~elrrLed~~~sI~~e~~YLr~REeemr~~nesTNsrv~~f 181 (210)
T KOG1691|consen 132 KKEKLEPLEVELRRLEDLVESIHEEMYYLREREEEMRNTNESTNSRVAWF 181 (210)
T ss_pred hhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHH
No 498
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=24.94 E-value=2.4e+02 Score=20.21 Aligned_cols=34 Identities=21% Similarity=0.190 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 042014 90 KHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKV 123 (169)
Q Consensus 90 ~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l 123 (169)
..+.+|+.++..|+.+...+..++..+..+..-+
T Consensus 70 ~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~L 103 (104)
T PF13600_consen 70 PELKELEEELEALEDELAALQDEIQALEAQIAFL 103 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 499
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=24.76 E-value=3.8e+02 Score=21.70 Aligned_cols=73 Identities=14% Similarity=0.179 Sum_probs=0.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042014 73 RMISNRESARRSRMRKQKHLD----ELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTDLQ 145 (169)
Q Consensus 73 R~isNRESARRSR~RKq~~le----eLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l~ 145 (169)
+++.--+.-+..|.+....+. .++.+...|......|......|...+..+......|.+.-..|...+..|+
T Consensus 61 ~L~~q~~~ek~~r~~~e~~l~~~Ed~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~q~~rlee~e~~l~~e~~~l~ 137 (158)
T PF09744_consen 61 QLETQYEREKELRKQAEEELLELEDQWRQERKDLQSQVEQLEEENRQLELKLKNLSDQSSRLEEREAELKKEYNRLH 137 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHH
No 500
>PRK14143 heat shock protein GrpE; Provisional
Probab=24.67 E-value=4.1e+02 Score=22.94 Aligned_cols=50 Identities=10% Similarity=0.119 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 94 ELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTD 143 (169)
Q Consensus 94 eLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~ 143 (169)
+...++..|..+...|..++..+..++.++.++-.-+|.....=+..+..
T Consensus 64 ~~~~~~~~l~~el~~l~~e~~elkd~~lR~~AdfeN~RKR~~kE~e~~~~ 113 (238)
T PRK14143 64 DNAARLAQLEQELESLKQELEELNSQYMRIAADFDNFRKRTSREQEDLRL 113 (238)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Done!