Query 042014
Match_columns 169
No_of_seqs 149 out of 651
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 22:43:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042014.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042014hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dh3_A Transcription factor CR 99.6 1.1E-15 3.9E-20 102.7 7.0 52 69-120 1-52 (55)
2 2wt7_A Proto-oncogene protein 99.4 9.4E-13 3.2E-17 90.1 8.9 51 68-118 1-51 (63)
3 2dgc_A Protein (GCN4); basic d 99.3 3.9E-12 1.3E-16 87.5 7.0 51 70-120 10-60 (63)
4 1t2k_D Cyclic-AMP-dependent tr 99.3 1.2E-11 4.1E-16 83.8 8.7 59 69-134 1-59 (61)
5 1jnm_A Proto-oncogene C-JUN; B 99.2 2E-11 6.9E-16 83.0 7.3 50 69-118 1-50 (62)
6 1gd2_E Transcription factor PA 99.1 6.3E-10 2.1E-14 78.2 8.8 61 70-130 9-69 (70)
7 1ci6_A Transcription factor AT 99.1 5.1E-10 1.8E-14 76.7 8.0 59 69-134 2-60 (63)
8 1hjb_A Ccaat/enhancer binding 98.7 1.5E-07 5.1E-12 68.5 9.4 48 68-115 14-61 (87)
9 1gu4_A CAAT/enhancer binding p 98.6 1.7E-07 6E-12 66.9 9.0 49 69-117 15-63 (78)
10 3a5t_A Transcription factor MA 98.6 3.8E-09 1.3E-13 79.7 -0.6 65 67-145 35-99 (107)
11 2wt7_B Transcription factor MA 98.3 5.9E-06 2E-10 60.6 10.3 66 66-145 24-89 (90)
12 2jee_A YIIU; FTSZ, septum, coi 96.8 0.011 3.8E-07 42.4 8.9 53 92-144 22-74 (81)
13 1skn_P DNA-binding domain of S 96.6 0.0014 4.8E-08 48.1 3.1 32 66-97 59-90 (92)
14 2oqq_A Transcription factor HY 96.5 0.0088 3E-07 38.1 6.1 39 89-134 2-40 (42)
15 1deb_A APC protein, adenomatou 96.1 0.025 8.6E-07 37.5 6.9 49 91-139 4-52 (54)
16 3hnw_A Uncharacterized protein 95.7 0.1 3.5E-06 40.2 9.8 59 87-145 72-130 (138)
17 2jee_A YIIU; FTSZ, septum, coi 94.6 0.32 1.1E-05 34.8 9.0 54 91-144 7-60 (81)
18 1go4_E MAD1 (mitotic arrest de 94.4 0.2 6.9E-06 37.0 7.9 28 121-148 71-98 (100)
19 3s9g_A Protein hexim1; cyclin 94.4 0.26 8.8E-06 36.7 8.4 45 94-138 41-92 (104)
20 2w6a_A ARF GTPase-activating p 94.2 0.24 8.1E-06 33.8 7.2 42 91-132 21-62 (63)
21 3vmx_A Voltage-gated hydrogen 93.3 0.43 1.5E-05 31.1 6.9 38 96-133 3-40 (48)
22 3a2a_A Voltage-gated hydrogen 92.9 0.31 1.1E-05 32.8 6.0 38 96-133 10-47 (58)
23 2c9l_Y EB1, zebra, BZLF1 trans 92.6 0.82 2.8E-05 30.8 7.7 24 73-96 5-28 (63)
24 3m48_A General control protein 91.5 0.23 7.8E-06 30.1 3.6 26 92-117 2-27 (33)
25 2oxj_A Hybrid alpha/beta pepti 91.4 0.34 1.2E-05 29.5 4.3 26 91-116 2-27 (34)
26 2dfs_A Myosin-5A; myosin-V, in 91.1 3.8 0.00013 40.5 13.9 60 85-144 986-1049(1080)
27 3hnw_A Uncharacterized protein 91.0 3.1 0.00011 31.8 10.7 55 89-143 81-135 (138)
28 2kz5_A Transcription factor NF 90.2 0.02 6.8E-07 41.9 -2.3 24 67-90 64-87 (91)
29 3he5_A Synzip1; heterodimeric 89.4 1.8 6.2E-05 27.6 6.7 40 91-130 4-43 (49)
30 2xdj_A Uncharacterized protein 89.4 2.8 9.7E-05 29.6 8.5 43 92-134 22-64 (83)
31 2w83_C C-JUN-amino-terminal ki 89.4 3.9 0.00013 28.9 9.1 56 92-147 4-66 (77)
32 1kd8_B GABH BLL, GCN4 acid bas 89.0 0.96 3.3E-05 27.8 4.9 28 91-118 2-29 (36)
33 3cve_A Homer protein homolog 1 88.9 3 0.0001 29.0 8.1 47 94-140 4-50 (72)
34 1t6f_A Geminin; coiled-coil, c 88.8 0.74 2.5E-05 28.4 4.3 30 103-132 6-35 (37)
35 2zxx_A Geminin; coiled-coil, c 88.6 1.1 3.9E-05 31.8 5.9 44 102-145 32-75 (79)
36 3c3f_A Alpha/beta peptide with 88.5 0.8 2.7E-05 27.8 4.3 26 91-116 2-27 (34)
37 1ci6_A Transcription factor AT 88.1 1.4 4.9E-05 29.3 5.9 32 113-144 25-56 (63)
38 3cvf_A Homer-3, homer protein 88.0 1.6 5.4E-05 31.0 6.3 46 92-137 8-53 (79)
39 2eqb_B RAB guanine nucleotide 87.9 4.6 0.00016 29.6 9.0 9 125-133 83-91 (97)
40 1t2k_D Cyclic-AMP-dependent tr 87.9 1.6 5.3E-05 28.7 5.9 33 113-145 24-56 (61)
41 3c3g_A Alpha/beta peptide with 87.3 1.1 3.6E-05 27.1 4.3 25 92-116 2-26 (33)
42 1gd2_E Transcription factor PA 86.5 1.7 5.8E-05 29.9 5.7 35 109-143 34-68 (70)
43 2dgc_A Protein (GCN4); basic d 86.4 1 3.6E-05 30.2 4.4 32 111-142 30-61 (63)
44 1jnm_A Proto-oncogene C-JUN; B 86.0 1.7 5.9E-05 28.6 5.4 34 112-145 23-56 (62)
45 2bni_A General control protein 86.0 1 3.6E-05 27.3 3.8 26 91-116 2-27 (34)
46 1gu4_A CAAT/enhancer binding p 86.0 2 6.9E-05 30.1 5.9 26 91-116 44-69 (78)
47 2oxj_A Hybrid alpha/beta pepti 86.0 1.3 4.6E-05 26.8 4.3 30 113-142 3-32 (34)
48 2wq1_A General control protein 85.8 1.4 4.9E-05 26.5 4.3 26 92-117 2-27 (33)
49 1kd8_A GABH AIV, GCN4 acid bas 85.6 1.3 4.5E-05 27.1 4.2 27 91-117 2-28 (36)
50 3m48_A General control protein 85.3 0.98 3.4E-05 27.3 3.4 28 114-141 3-30 (33)
51 3s9g_A Protein hexim1; cyclin 84.9 6.1 0.00021 29.3 8.3 29 89-117 64-92 (104)
52 2hy6_A General control protein 84.8 1.3 4.4E-05 26.9 3.8 27 91-117 2-28 (34)
53 1uo4_A General control protein 84.7 1.3 4.5E-05 26.8 3.8 26 91-116 2-27 (34)
54 3s4r_A Vimentin; alpha-helix, 84.6 6.2 0.00021 28.1 8.2 33 113-145 58-90 (93)
55 3mq7_A Bone marrow stromal ant 84.5 6.4 0.00022 29.9 8.4 33 99-131 73-105 (121)
56 2v71_A Nuclear distribution pr 84.5 5.8 0.0002 32.1 8.8 51 92-142 90-140 (189)
57 2yy0_A C-MYC-binding protein; 84.4 2.1 7E-05 27.9 5.0 20 97-116 19-38 (53)
58 2v71_A Nuclear distribution pr 84.1 7.7 0.00026 31.4 9.4 20 125-144 95-114 (189)
59 3efg_A Protein SLYX homolog; x 83.9 3.7 0.00013 28.6 6.5 50 90-146 14-63 (78)
60 3o0z_A RHO-associated protein 83.9 9.5 0.00033 30.4 9.7 58 81-145 81-138 (168)
61 2lw1_A ABC transporter ATP-bin 83.2 8.7 0.0003 26.7 8.3 58 88-145 20-83 (89)
62 3efg_A Protein SLYX homolog; x 82.9 4.2 0.00014 28.3 6.5 11 134-144 44-54 (78)
63 2w83_C C-JUN-amino-terminal ki 82.6 2.5 8.4E-05 29.9 5.1 42 93-134 33-74 (77)
64 2oqq_A Transcription factor HY 82.6 2.5 8.6E-05 26.7 4.6 26 88-113 15-40 (42)
65 3c3g_A Alpha/beta peptide with 82.0 2.6 8.7E-05 25.4 4.3 29 114-142 3-31 (33)
66 1dh3_A Transcription factor CR 81.9 1.5 5.3E-05 28.5 3.7 30 112-141 23-52 (55)
67 3a7p_A Autophagy protein 16; c 81.6 17 0.00059 28.5 13.1 51 88-138 87-137 (152)
68 3m9b_A Proteasome-associated A 81.4 2.3 8E-05 35.9 5.5 26 91-116 55-80 (251)
69 1uii_A Geminin; human, DNA rep 81.3 4.6 0.00016 28.9 6.2 36 102-137 44-79 (83)
70 3c3f_A Alpha/beta peptide with 81.0 2.9 9.8E-05 25.3 4.3 30 113-142 3-32 (34)
71 2v66_B Nuclear distribution pr 81.0 12 0.00039 28.0 8.6 52 91-142 36-87 (111)
72 1p9i_A Cortexillin I/GCN4 hybr 80.6 2.4 8.3E-05 24.7 3.8 22 120-141 8-29 (31)
73 3m91_A Proteasome-associated A 80.2 9.7 0.00033 24.7 7.1 25 92-116 11-35 (51)
74 3a7p_A Autophagy protein 16; c 80.1 20 0.00067 28.2 11.0 60 84-143 76-135 (152)
75 1dip_A Delta-sleep-inducing pe 80.0 1.2 4.2E-05 31.5 2.8 29 105-133 16-44 (78)
76 3ra3_B P2F; coiled coil domain 79.9 2.3 7.9E-05 24.3 3.4 24 122-145 4-27 (28)
77 2yy0_A C-MYC-binding protein; 79.6 4.3 0.00015 26.4 5.2 24 121-144 22-45 (53)
78 1i84_S Smooth muscle myosin he 79.1 20 0.00067 35.4 11.9 27 119-145 914-940 (1184)
79 2dfs_A Myosin-5A; myosin-V, in 78.8 26 0.0009 34.6 12.7 28 92-119 986-1013(1080)
80 4h22_A Leucine-rich repeat fli 78.5 16 0.00055 27.0 8.6 50 93-142 33-82 (103)
81 2wuj_A Septum site-determining 78.5 1.9 6.5E-05 28.2 3.2 25 116-140 32-56 (57)
82 4h22_A Leucine-rich repeat fli 77.8 11 0.00038 27.9 7.6 11 67-77 8-18 (103)
83 2r2v_A GCN4 leucine zipper; co 76.9 4.7 0.00016 24.4 4.3 27 91-117 2-28 (34)
84 1fmh_A General control protein 76.2 5.9 0.0002 23.4 4.5 26 92-117 3-28 (33)
85 3ra3_A P1C; coiled coil domain 76.0 3.2 0.00011 23.7 3.3 25 121-145 3-27 (28)
86 3oja_A Leucine-rich immune mol 75.8 24 0.00082 30.5 10.5 25 117-141 441-465 (487)
87 4etp_A Kinesin-like protein KA 75.3 13 0.00043 32.7 8.6 27 93-119 6-32 (403)
88 3mq7_A Bone marrow stromal ant 75.3 20 0.00068 27.2 8.5 54 92-145 59-112 (121)
89 1uo4_A General control protein 74.7 3.9 0.00013 24.7 3.6 28 114-141 4-31 (34)
90 1gk6_A Vimentin; intermediate 74.3 15 0.00052 23.9 7.1 50 93-142 3-52 (59)
91 3m91_A Proteasome-associated A 74.3 15 0.00051 23.8 6.9 11 131-141 36-46 (51)
92 1nkp_B MAX protein, MYC proto- 74.3 4.4 0.00015 27.7 4.4 27 118-144 54-80 (83)
93 2j5u_A MREC protein; bacterial 74.1 1.6 5.5E-05 36.1 2.4 32 101-132 23-57 (255)
94 1kd8_B GABH BLL, GCN4 acid bas 74.0 7.7 0.00026 23.7 4.8 30 114-143 4-33 (36)
95 1p9i_A Cortexillin I/GCN4 hybr 73.9 5 0.00017 23.4 3.8 27 92-118 1-27 (31)
96 4etp_A Kinesin-like protein KA 73.4 13 0.00045 32.5 8.2 51 88-138 8-58 (403)
97 2xdj_A Uncharacterized protein 73.4 21 0.00072 25.1 7.9 37 86-122 23-59 (83)
98 3u06_A Protein claret segregat 72.9 12 0.00042 33.0 7.9 24 93-116 6-29 (412)
99 3jsv_C NF-kappa-B essential mo 72.8 25 0.00084 25.6 10.6 72 76-147 9-83 (94)
100 2v4h_A NF-kappa-B essential mo 72.5 27 0.00094 26.0 10.6 57 86-142 41-107 (110)
101 2bni_A General control protein 72.5 4.2 0.00014 24.6 3.3 29 114-142 4-32 (34)
102 1nlw_A MAD protein, MAX dimeri 71.9 8.7 0.0003 26.6 5.4 20 122-141 58-77 (80)
103 1ic2_A Tropomyosin alpha chain 71.9 21 0.00071 24.4 7.5 54 90-143 20-73 (81)
104 1go4_E MAD1 (mitotic arrest de 71.6 11 0.00039 27.6 6.2 39 112-150 13-51 (100)
105 1wt6_A Myotonin-protein kinase 71.6 24 0.00083 25.0 7.8 59 77-145 14-72 (81)
106 3m9b_A Proteasome-associated A 71.3 5.3 0.00018 33.7 4.9 39 108-146 58-96 (251)
107 1jcd_A Major outer membrane li 71.2 18 0.00063 23.5 7.6 44 91-141 5-48 (52)
108 2wvr_A Geminin; DNA replicatio 71.1 34 0.0011 28.2 9.5 40 102-141 113-152 (209)
109 3u1c_A Tropomyosin alpha-1 cha 71.0 26 0.00088 25.0 9.2 49 90-138 23-71 (101)
110 3oja_B Anopheles plasmodium-re 70.5 55 0.0019 28.7 14.3 35 107-141 526-560 (597)
111 1hjb_A Ccaat/enhancer binding 69.7 27 0.00092 24.8 8.8 25 91-115 44-68 (87)
112 3iv1_A Tumor susceptibility ge 69.6 26 0.0009 24.6 10.2 59 88-146 16-74 (78)
113 2oa5_A Hypothetical protein BQ 69.5 2.7 9.3E-05 31.5 2.5 26 90-115 8-33 (110)
114 3e98_A GAF domain of unknown f 69.0 17 0.00058 29.9 7.5 44 94-141 69-112 (252)
115 2hy6_A General control protein 68.6 8.6 0.00029 23.2 4.1 29 114-142 4-32 (34)
116 1am9_A Srebp-1A, protein (ster 67.5 9.6 0.00033 26.2 4.9 67 78-145 11-77 (82)
117 3nmd_A CGMP dependent protein 66.9 16 0.00056 25.3 5.9 28 88-115 38-65 (72)
118 1wlq_A Geminin; coiled-coil; 2 66.6 32 0.0011 24.5 9.0 38 102-139 36-73 (83)
119 1nkp_B MAX protein, MYC proto- 66.6 9 0.00031 26.1 4.6 12 124-135 67-78 (83)
120 2wuj_A Septum site-determining 66.1 6.8 0.00023 25.5 3.7 29 90-118 27-55 (57)
121 3oja_A Leucine-rich immune mol 66.1 64 0.0022 27.7 12.3 56 91-146 422-477 (487)
122 1joc_A EEA1, early endosomal a 65.5 38 0.0013 24.9 9.3 44 90-133 11-54 (125)
123 3na7_A HP0958; flagellar bioge 65.4 48 0.0016 26.8 9.5 24 92-115 34-57 (256)
124 1a93_B MAX protein, coiled coi 65.1 11 0.00038 22.8 4.1 18 118-135 14-31 (34)
125 3u59_A Tropomyosin beta chain; 65.1 34 0.0012 24.2 9.0 48 90-137 23-70 (101)
126 3cvf_A Homer-3, homer protein 65.0 33 0.0011 24.0 8.7 52 90-148 27-78 (79)
127 1dip_A Delta-sleep-inducing pe 64.8 7.8 0.00027 27.3 3.9 20 91-110 23-42 (78)
128 2xv5_A Lamin-A/C; structural p 64.7 31 0.0011 23.7 8.4 51 85-142 7-57 (74)
129 3he5_B Synzip2; heterodimeric 64.6 25 0.00085 22.5 6.6 22 123-144 22-43 (52)
130 3i00_A HIP-I, huntingtin-inter 64.1 42 0.0014 25.0 9.5 48 85-139 35-82 (120)
131 4emc_A Monopolin complex subun 64.1 16 0.00054 29.7 6.2 24 91-114 14-37 (190)
132 2ocy_A RAB guanine nucleotide 63.6 35 0.0012 26.7 7.9 30 118-147 108-137 (154)
133 2wq1_A General control protein 63.2 14 0.00048 22.2 4.3 27 115-141 4-30 (33)
134 1nkp_A C-MYC, MYC proto-oncoge 63.2 20 0.0007 25.0 6.0 15 123-137 71-85 (88)
135 2v66_B Nuclear distribution pr 62.2 46 0.0016 24.7 11.3 47 89-135 55-101 (111)
136 2fxo_A Myosin heavy chain, car 61.9 45 0.0015 24.5 9.8 51 93-143 65-115 (129)
137 3u06_A Protein claret segregat 61.9 38 0.0013 29.8 8.8 46 90-135 10-55 (412)
138 1am9_A Srebp-1A, protein (ster 61.3 36 0.0012 23.2 7.9 50 66-115 12-75 (82)
139 1kd8_A GABH AIV, GCN4 acid bas 61.2 23 0.00078 21.6 5.0 29 115-143 5-33 (36)
140 2j5u_A MREC protein; bacterial 61.0 4.7 0.00016 33.3 2.6 7 124-130 32-38 (255)
141 3vkg_A Dynein heavy chain, cyt 60.9 88 0.003 34.8 12.8 20 122-141 2081-2100(3245)
142 3trt_A Vimentin; cytoskeleton, 60.8 34 0.0012 22.7 9.1 9 93-101 38-46 (77)
143 1nkp_A C-MYC, MYC proto-oncoge 60.5 29 0.00099 24.2 6.4 33 113-145 54-86 (88)
144 1nlw_A MAD protein, MAX dimeri 60.3 14 0.00049 25.4 4.7 23 90-112 47-69 (80)
145 3w03_C DNA repair protein XRCC 60.2 15 0.0005 29.6 5.3 19 123-141 164-182 (184)
146 1wt6_A Myotonin-protein kinase 60.0 43 0.0015 23.7 7.3 37 87-123 35-71 (81)
147 3bbp_D GRIP and coiled-coil do 59.1 11 0.00037 26.2 3.8 19 119-137 44-62 (71)
148 4emc_A Monopolin complex subun 58.9 33 0.0011 27.8 7.2 26 93-118 23-48 (190)
149 1deb_A APC protein, adenomatou 58.6 27 0.00092 22.9 5.4 30 115-144 7-36 (54)
150 2ve7_C Kinetochore protein NUF 58.6 5.3 0.00018 33.1 2.5 81 65-145 116-203 (250)
151 3w03_C DNA repair protein XRCC 58.3 38 0.0013 27.2 7.4 25 92-116 154-178 (184)
152 1jcd_A Major outer membrane li 58.3 35 0.0012 22.1 7.6 37 91-130 12-48 (52)
153 2wt7_B Transcription factor MA 58.2 17 0.00057 26.2 4.8 33 91-123 56-88 (90)
154 2r2v_A GCN4 leucine zipper; co 57.8 20 0.00067 21.7 4.3 29 114-142 4-32 (34)
155 2oto_A M protein; helical coil 57.3 59 0.002 24.4 8.8 33 91-123 51-83 (155)
156 3bas_A Myosin heavy chain, str 56.9 46 0.0016 23.1 12.8 54 89-142 34-87 (89)
157 2lz1_A Nuclear factor erythroi 56.9 0.15 5.2E-06 37.2 -6.2 22 68-89 65-86 (90)
158 1gk7_A Vimentin; intermediate 55.7 19 0.00064 22.0 4.1 19 117-135 19-37 (39)
159 3swf_A CGMP-gated cation chann 55.6 49 0.0017 23.0 7.3 48 93-143 3-50 (74)
160 3ol1_A Vimentin; structural ge 55.6 57 0.002 23.8 9.5 38 102-139 67-104 (119)
161 3he5_A Synzip1; heterodimeric 55.5 37 0.0013 21.5 6.7 18 99-116 5-22 (49)
162 2ve7_C Kinetochore protein NUF 54.7 18 0.00063 29.8 5.2 38 108-145 145-182 (250)
163 3q0x_A Centriole protein; cent 54.6 59 0.002 26.8 8.2 50 67-122 161-210 (228)
164 3q8t_A Beclin-1; autophagy, AT 54.5 55 0.0019 23.2 8.6 49 93-141 42-90 (96)
165 3nmd_A CGMP dependent protein 54.3 21 0.00072 24.8 4.6 27 112-138 41-67 (72)
166 1zme_C Proline utilization tra 54.1 13 0.00044 23.7 3.4 24 90-113 44-67 (70)
167 3tnu_B Keratin, type II cytosk 53.1 26 0.00088 25.8 5.3 30 91-120 44-73 (129)
168 2wt7_A Proto-oncogene protein 52.4 46 0.0016 21.7 10.3 34 112-145 24-57 (63)
169 3o0z_A RHO-associated protein 50.9 91 0.0031 24.7 9.1 35 94-128 38-72 (168)
170 1fmh_A General control protein 50.8 28 0.00097 20.4 4.1 24 116-139 6-29 (33)
171 2w6a_A ARF GTPase-activating p 50.3 56 0.0019 22.1 6.9 39 108-146 17-55 (63)
172 2e7s_A RAB guanine nucleotide 50.2 70 0.0024 24.5 7.5 25 121-145 99-123 (135)
173 3q0x_A Centriole protein; cent 49.7 71 0.0024 26.3 8.0 24 95-118 169-192 (228)
174 1wle_A Seryl-tRNA synthetase; 49.3 1.5E+02 0.0052 26.8 10.9 19 123-141 121-139 (501)
175 1x8y_A Lamin A/C; structural p 49.1 63 0.0021 22.3 10.3 54 89-142 27-80 (86)
176 3a7o_A Autophagy protein 16; c 48.2 67 0.0023 22.4 7.2 20 119-138 54-73 (75)
177 3s4r_A Vimentin; alpha-helix, 47.3 62 0.0021 22.8 6.4 27 89-115 55-81 (93)
178 3plt_A Sphingolipid long chain 46.8 66 0.0023 26.7 7.4 31 66-96 90-121 (234)
179 3swy_A Cyclic nucleotide-gated 46.5 53 0.0018 20.8 6.8 24 94-117 2-25 (46)
180 1uix_A RHO-associated kinase; 46.3 70 0.0024 22.0 7.5 30 95-124 2-31 (71)
181 3swk_A Vimentin; cytoskeleton, 46.2 72 0.0025 22.1 7.9 25 93-117 3-27 (86)
182 1hlo_A Protein (transcription 46.2 48 0.0016 22.3 5.5 51 89-139 28-78 (80)
183 3vkg_A Dynein heavy chain, cyt 45.9 1.1E+02 0.0039 34.0 10.7 47 97-143 2028-2074(3245)
184 3i00_A HIP-I, huntingtin-inter 45.1 92 0.0032 23.1 9.9 21 126-146 62-82 (120)
185 1gk4_A Vimentin; intermediate 44.3 74 0.0025 21.8 10.5 56 87-142 23-78 (84)
186 3oa7_A Head morphogenesis prot 43.4 1E+02 0.0035 25.2 7.8 39 100-138 33-71 (206)
187 2oto_A M protein; helical coil 43.2 1E+02 0.0035 23.1 8.8 27 115-141 54-80 (155)
188 2zvf_A Alanyl-tRNA synthetase; 42.7 23 0.00078 26.5 3.7 17 124-140 38-54 (171)
189 2efr_A General control protein 42.6 1.2E+02 0.004 23.6 10.2 49 83-131 98-146 (155)
190 2xv5_A Lamin-A/C; structural p 42.2 80 0.0027 21.5 7.6 45 98-142 6-50 (74)
191 2ve7_A Kinetochore protein HEC 41.9 38 0.0013 28.7 5.3 32 96-127 184-215 (315)
192 3qh9_A Liprin-beta-2; coiled-c 41.9 90 0.0031 22.1 8.8 29 90-118 26-54 (81)
193 3he4_A Synzip6; heterodimeric 41.9 12 0.00041 24.3 1.7 24 122-145 28-51 (56)
194 3na7_A HP0958; flagellar bioge 41.1 1.4E+02 0.0047 24.0 12.6 8 154-161 194-201 (256)
195 3iox_A AGI/II, PA; alpha helix 41.1 1.4E+02 0.0046 27.5 9.0 29 92-120 36-64 (497)
196 1zxa_A CGMP-dependent protein 40.9 63 0.0022 21.9 5.3 28 88-115 23-50 (67)
197 4fla_A Regulation of nuclear P 40.8 1.2E+02 0.0041 23.2 8.3 11 75-85 64-74 (152)
198 2w6b_A RHO guanine nucleotide 40.7 73 0.0025 21.1 5.4 21 94-114 14-34 (56)
199 3cve_A Homer protein homolog 1 39.7 90 0.0031 21.4 8.3 38 89-126 20-57 (72)
200 2fxo_A Myosin heavy chain, car 39.2 1.1E+02 0.0038 22.3 13.0 58 88-145 67-124 (129)
201 4ath_A MITF, microphthalmia-as 38.9 77 0.0026 22.4 5.7 29 90-118 49-77 (83)
202 3a5t_A Transcription factor MA 38.7 1.8 6.1E-05 32.2 -3.1 21 97-117 72-92 (107)
203 1uii_A Geminin; human, DNA rep 38.1 1.1E+02 0.0036 21.8 7.1 18 92-109 55-72 (83)
204 2er8_A Regulatory protein Leu3 37.9 19 0.00064 23.2 2.2 21 89-109 48-68 (72)
205 2z5i_A TM, general control pro 37.6 78 0.0027 20.1 5.7 37 79-115 8-44 (52)
206 3bas_A Myosin heavy chain, str 37.6 1E+02 0.0034 21.4 9.5 55 91-145 29-83 (89)
207 2ve7_A Kinetochore protein HEC 37.5 86 0.0029 26.4 6.8 28 90-117 185-212 (315)
208 3tnu_B Keratin, type II cytosk 37.4 1.2E+02 0.004 22.1 9.5 50 91-140 76-125 (129)
209 3tnu_A Keratin, type I cytoske 37.3 1.2E+02 0.0041 22.2 9.4 51 91-141 78-128 (131)
210 3tnu_A Keratin, type I cytoske 36.3 1.2E+02 0.0043 22.1 10.0 20 95-114 50-69 (131)
211 2dq0_A Seryl-tRNA synthetase; 36.3 1.7E+02 0.0059 25.8 8.9 19 123-141 74-92 (455)
212 4gkw_A Spindle assembly abnorm 36.1 1.5E+02 0.0052 23.0 8.1 46 93-138 115-160 (167)
213 1f5n_A Interferon-induced guan 35.2 2.7E+02 0.0091 25.6 12.0 17 131-147 566-582 (592)
214 3q8t_A Beclin-1; autophagy, AT 35.1 1.2E+02 0.004 21.4 11.4 27 97-123 25-51 (96)
215 3swk_A Vimentin; cytoskeleton, 33.3 52 0.0018 22.9 4.0 52 90-141 7-58 (86)
216 3mud_A DNA repair protein XRCC 33.3 1.8E+02 0.0062 23.1 7.8 18 96-113 134-151 (175)
217 3qne_A Seryl-tRNA synthetase, 33.2 2.4E+02 0.008 25.5 9.3 17 90-106 47-63 (485)
218 1s1c_X RHO-associated, coiled- 33.2 1.2E+02 0.004 20.9 7.4 31 94-124 3-33 (71)
219 1wle_A Seryl-tRNA synthetase; 33.0 2.7E+02 0.0093 25.0 10.6 21 122-142 127-147 (501)
220 1hlo_A Protein (transcription 32.7 42 0.0014 22.6 3.4 17 65-81 17-33 (80)
221 1joc_A EEA1, early endosomal a 32.5 1E+02 0.0035 22.5 5.8 38 94-131 8-45 (125)
222 3m0d_C TNF receptor-associated 31.8 1.1E+02 0.0037 20.0 9.7 58 88-145 4-61 (65)
223 3thf_A Protein shroom; coiled- 30.9 1.7E+02 0.0058 23.6 7.2 30 85-114 14-43 (190)
224 4b4t_K 26S protease regulatory 30.5 67 0.0023 28.3 5.2 45 94-145 46-90 (428)
225 4b4t_K 26S protease regulatory 30.3 90 0.0031 27.5 6.0 29 92-120 51-79 (428)
226 2zvf_A Alanyl-tRNA synthetase; 30.2 71 0.0024 23.7 4.7 25 94-118 29-53 (171)
227 3mov_A Lamin-B1; LMNB1, B-type 30.1 1.5E+02 0.005 21.0 10.2 51 91-141 38-88 (95)
228 2l5g_B Putative uncharacterize 30.0 83 0.0028 19.7 4.1 31 116-146 7-37 (42)
229 3trt_A Vimentin; cytoskeleton, 29.5 1.2E+02 0.0041 19.9 7.2 16 130-145 54-69 (77)
230 1fxk_C Protein (prefoldin); ar 29.1 1.6E+02 0.0054 21.1 6.4 25 94-118 99-123 (133)
231 2fic_A Bridging integrator 1; 28.9 2E+02 0.007 22.3 8.1 11 127-137 199-209 (251)
232 4ati_A MITF, microphthalmia-as 28.5 40 0.0014 24.7 2.9 15 123-137 96-110 (118)
233 3he5_B Synzip2; heterodimeric 28.5 1.2E+02 0.004 19.4 6.8 24 95-118 8-31 (52)
234 2eqb_B RAB guanine nucleotide 28.2 1.7E+02 0.0058 21.1 9.0 52 90-141 12-63 (97)
235 2v4h_A NF-kappa-B essential mo 28.1 1.8E+02 0.0063 21.5 10.5 40 91-130 63-109 (110)
236 3u1c_A Tropomyosin alpha-1 cha 27.9 1.6E+02 0.0055 20.7 12.6 57 88-144 42-98 (101)
237 2i1j_A Moesin; FERM, coiled-co 27.8 1.7E+02 0.0059 26.6 7.6 72 65-136 309-381 (575)
238 2l5g_A GPS2 protein, G protein 27.6 78 0.0027 19.4 3.6 18 91-108 16-33 (38)
239 3htk_A Structural maintenance 27.3 1.2E+02 0.004 19.0 8.8 28 89-116 11-38 (60)
240 3ghg_A Fibrinogen alpha chain; 27.2 3.8E+02 0.013 25.0 9.6 30 92-121 112-141 (562)
241 4dk0_A Putative MACA; alpha-ha 27.1 2.5E+02 0.0086 22.7 8.2 23 129-151 140-162 (369)
242 2i1j_A Moesin; FERM, coiled-co 26.9 1.3E+02 0.0046 27.3 6.7 8 82-89 310-317 (575)
243 4dzo_A Mitotic spindle assembl 26.5 1.5E+02 0.0053 21.8 5.9 23 91-113 5-27 (123)
244 3bbp_D GRIP and coiled-coil do 25.2 69 0.0024 22.1 3.4 43 104-146 22-64 (71)
245 4gkw_A Spindle assembly abnorm 25.0 2.4E+02 0.0083 21.9 9.3 11 102-112 65-75 (167)
246 1ez3_A Syntaxin-1A; three heli 25.0 1.8E+02 0.006 20.3 5.8 13 131-143 94-106 (127)
247 3n7n_E Monopolin complex subun 24.4 16 0.00054 26.7 0.0 49 100-149 39-87 (95)
248 2q6q_A Spindle POLE BODY compo 24.1 1.8E+02 0.0062 20.1 8.7 54 94-147 7-60 (74)
249 3gp4_A Transcriptional regulat 24.0 2.2E+02 0.0074 20.9 6.8 29 89-117 87-115 (142)
250 4ati_A MITF, microphthalmia-as 23.9 1.3E+02 0.0043 21.9 4.9 22 126-147 92-113 (118)
251 3q4f_C DNA repair protein XRCC 23.7 1.7E+02 0.0058 23.6 5.9 9 43-51 69-77 (186)
252 3v86_A De novo design helix; c 22.5 1.1E+02 0.0038 17.1 4.0 9 98-106 8-16 (27)
253 1x8y_A Lamin A/C; structural p 22.5 1.9E+02 0.0065 19.8 6.6 30 89-118 34-63 (86)
254 3viq_B Mating-type switching p 22.1 2.1E+02 0.0073 20.1 8.9 55 91-145 9-68 (85)
255 2wg5_A General control protein 22.0 83 0.0028 22.6 3.5 25 122-146 11-35 (109)
256 1deq_A Fibrinogen (alpha chain 21.6 4.3E+02 0.015 23.5 9.1 38 108-145 117-154 (390)
257 3a2a_A Voltage-gated hydrogen 21.2 1.9E+02 0.0064 19.2 6.2 22 93-114 21-42 (58)
258 2oa5_A Hypothetical protein BQ 21.1 55 0.0019 24.4 2.4 20 115-134 12-31 (110)
259 3fx0_A NF-kappa-B essential mo 20.8 43 0.0015 24.4 1.7 17 87-103 35-51 (96)
260 1ses_A Seryl-tRNA synthetase; 20.8 3.5E+02 0.012 23.5 8.0 65 85-149 37-102 (421)
261 1g6u_A Domain swapped dimer; d 20.4 1.7E+02 0.0058 18.3 4.9 25 120-144 22-46 (48)
262 3kin_B Kinesin heavy chain; mo 20.3 1.8E+02 0.0063 21.0 5.1 15 99-113 91-105 (117)
263 3qne_A Seryl-tRNA synthetase, 20.2 4.8E+02 0.016 23.5 11.3 20 123-142 76-95 (485)
264 3swf_A CGMP-gated cation chann 20.0 2.2E+02 0.0077 19.6 6.2 19 108-126 11-29 (74)
No 1
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=99.61 E-value=1.1e-15 Score=102.71 Aligned_cols=52 Identities=31% Similarity=0.518 Sum_probs=48.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 042014 69 RKQRRMISNRESARRSRMRKQKHLDELWSQVVWLRNENHQLVDKLNHVSGCH 120 (169)
Q Consensus 69 RR~RR~isNRESARRSR~RKq~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~ 120 (169)
||.+||++||+||++||+||++|+++|+.+|..|..+|..|..++..|.+.+
T Consensus 1 kr~rR~~~NResA~rSR~RKk~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~ 52 (55)
T 1dh3_A 1 KREVRLMKNREAARESRRKKKEYVKSLENRVAVLENQNKTLIEELKALKDLY 52 (55)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred ChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5889999999999999999999999999999999999999999988877654
No 2
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=99.42 E-value=9.4e-13 Score=90.15 Aligned_cols=51 Identities=22% Similarity=0.312 Sum_probs=47.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042014 68 ERKQRRMISNRESARRSRMRKQKHLDELWSQVVWLRNENHQLVDKLNHVSG 118 (169)
Q Consensus 68 eRR~RR~isNRESARRSR~RKq~~leeLe~qV~~L~~eN~~L~~~l~~l~~ 118 (169)
|||.+|+++||+||++||.||++++++|+.+|..|..+|..|..++..|..
T Consensus 1 Ekr~rrrerNR~AA~rcR~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~ 51 (63)
T 2wt7_A 1 EKRRIRRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLK 51 (63)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 589999999999999999999999999999999999999999998865443
No 3
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=99.31 E-value=3.9e-12 Score=87.53 Aligned_cols=51 Identities=27% Similarity=0.311 Sum_probs=42.3
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 042014 70 KQRRMISNRESARRSRMRKQKHLDELWSQVVWLRNENHQLVDKLNHVSGCH 120 (169)
Q Consensus 70 R~RR~isNRESARRSR~RKq~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~ 120 (169)
..++..+||+||+|||.||++|+++|+.+|..|..+|..|..++..|.+.+
T Consensus 10 ~~~KR~rNreAArrsR~RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 10 AALKRARNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445699999999999999999999999999999988888877766543
No 4
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=99.30 E-value=1.2e-11 Score=83.84 Aligned_cols=59 Identities=25% Similarity=0.280 Sum_probs=50.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 042014 69 RKQRRMISNRESARRSRMRKQKHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEA 134 (169)
Q Consensus 69 RR~RR~isNRESARRSR~RKq~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~ 134 (169)
||++|+++||+||++||.||++++++|+.+|..|..+|..|..++..| ..|+..|+..+
T Consensus 1 kR~~r~erNr~AA~k~R~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L-------~~e~~~Lk~~l 59 (61)
T 1t2k_D 1 KRRKFLERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLL-------RNEVAQLKQLL 59 (61)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
T ss_pred CHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHh
Confidence 578999999999999999999999999999999999999999988764 44555555443
No 5
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=99.24 E-value=2e-11 Score=83.05 Aligned_cols=50 Identities=28% Similarity=0.402 Sum_probs=44.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042014 69 RKQRRMISNRESARRSRMRKQKHLDELWSQVVWLRNENHQLVDKLNHVSG 118 (169)
Q Consensus 69 RR~RR~isNRESARRSR~RKq~~leeLe~qV~~L~~eN~~L~~~l~~l~~ 118 (169)
|+.||+.+||+||++||.||+.++++|+.+|..|..+|..|..++..|..
T Consensus 1 K~errr~rNr~AA~k~R~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~ 50 (62)
T 1jnm_A 1 KAERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLRE 50 (62)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36788899999999999999999999999999999999999988876543
No 6
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=99.07 E-value=6.3e-10 Score=78.23 Aligned_cols=61 Identities=26% Similarity=0.269 Sum_probs=49.3
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 042014 70 KQRRMISNRESARRSRMRKQKHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAEL 130 (169)
Q Consensus 70 R~RR~isNRESARRSR~RKq~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~L 130 (169)
..||+..||.|+|.+|.||++|+.+|+.+|..|+..+..|..++..|..++..|..||..|
T Consensus 9 ~~kR~~qNR~AQRafReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~l 69 (70)
T 1gd2_E 9 SSKRKAQNRAAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRIL 69 (70)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHC
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4689999999999999999999999999999999988876665555555555555555444
No 7
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=99.07 E-value=5.1e-10 Score=76.67 Aligned_cols=59 Identities=24% Similarity=0.300 Sum_probs=46.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 042014 69 RKQRRMISNRESARRSRMRKQKHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEA 134 (169)
Q Consensus 69 RR~RR~isNRESARRSR~RKq~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~ 134 (169)
|+.+++.+||.||+|+|.||+++.++|+.++..|..+|..|..++..| ..|+..|+.-+
T Consensus 2 k~~rKr~rNr~AA~R~R~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L-------~~E~~~Lk~ll 60 (63)
T 1ci6_A 2 KKLKKMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEALKERADSL-------AKEIQYLKDLI 60 (63)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
T ss_pred chHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
Confidence 678899999999999999999999999999999999999999988754 45666666544
No 8
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=98.66 E-value=1.5e-07 Score=68.53 Aligned_cols=48 Identities=25% Similarity=0.243 Sum_probs=43.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 68 ERKQRRMISNRESARRSRMRKQKHLDELWSQVVWLRNENHQLVDKLNH 115 (169)
Q Consensus 68 eRR~RR~isNRESARRSR~RKq~~leeLe~qV~~L~~eN~~L~~~l~~ 115 (169)
++...|..+|.++|+|||.+++..-.+++.+|..|+.+|..|..+|..
T Consensus 14 ~~Y~~rR~rNN~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~ 61 (87)
T 1hjb_A 14 DEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQ 61 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566779999999999999999999999999999999999998765
No 9
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=98.64 E-value=1.7e-07 Score=66.91 Aligned_cols=49 Identities=27% Similarity=0.247 Sum_probs=42.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 69 RKQRRMISNRESARRSRMRKQKHLDELWSQVVWLRNENHQLVDKLNHVS 117 (169)
Q Consensus 69 RR~RR~isNRESARRSR~RKq~~leeLe~qV~~L~~eN~~L~~~l~~l~ 117 (169)
.-..|..+|.++|+|||.+++....+++.+|..|+.+|..|..+|..|.
T Consensus 15 ~Y~~rR~rNN~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~ 63 (78)
T 1gu4_A 15 EYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLS 63 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445567999999999999999999999999999999999998877543
No 10
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=98.60 E-value=3.8e-09 Score=79.70 Aligned_cols=65 Identities=31% Similarity=0.410 Sum_probs=44.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042014 67 NERKQRRMISNRESARRSRMRKQKHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTDLQ 145 (169)
Q Consensus 67 deRR~RR~isNRESARRSR~RKq~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l~ 145 (169)
.-|..||.++||.+|+.||.||.+..++|+.++..|..+... |..||..|+.++..++.++..|.
T Consensus 35 ~lK~~RR~lKNR~yAq~CR~rk~~~~~~LE~e~~~L~~e~e~--------------L~~En~~l~~E~~~lk~k~e~L~ 99 (107)
T 3a5t_A 35 QLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEK--------------LASENASMKLELDALRSKYEALQ 99 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSTTTT--------------TTSTTSHHHHTTTSSSSCC----
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 348999999999999999999999999999777666554333 33455555555555555444443
No 11
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=98.32 E-value=5.9e-06 Score=60.55 Aligned_cols=66 Identities=24% Similarity=0.282 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042014 66 INERKQRRMISNRESARRSRMRKQKHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTDLQ 145 (169)
Q Consensus 66 ~deRR~RR~isNRESARRSR~RKq~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l~ 145 (169)
..-|..||.++||.+|+-+|.||....++||.++..|..+-..|. .||..+..+...+++++.+|.
T Consensus 24 ~~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~--------------~e~~~~~~e~d~~k~k~~~L~ 89 (90)
T 2wt7_B 24 IRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLK--------------QEVSRLARERDAYKVKSEKLA 89 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHhc
Confidence 456788999999999999999999999999988888876654444 466677777777777776653
No 12
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=96.75 E-value=0.011 Score=42.38 Aligned_cols=53 Identities=19% Similarity=0.287 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042014 92 LDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTDL 144 (169)
Q Consensus 92 leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l 144 (169)
+.-|..+|+.|+.+|..|..+.+.+......+..||.+|+.+......+|..|
T Consensus 22 I~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~L 74 (81)
T 2jee_A 22 ITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQAL 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466688888888888888888888888889999999999999988888765
No 13
>1skn_P DNA-binding domain of SKN-1; complex (transcription factor/DNA), transcription/DNA complex; HET: DNA LDA; 2.50A {Caenorhabditis elegans} SCOP: a.37.1.1
Probab=96.56 E-value=0.0014 Score=48.06 Aligned_cols=32 Identities=31% Similarity=0.313 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 042014 66 INERKQRRMISNRESARRSRMRKQKHLDELWS 97 (169)
Q Consensus 66 ~deRR~RR~isNRESARRSR~RKq~~leeLe~ 97 (169)
...|..||..+||.+|+++|+||....+.|+.
T Consensus 59 ~~ir~~RRR~KNr~AA~~CRkrK~~~~d~l~~ 90 (92)
T 1skn_P 59 QLIRKIRRRGKNKVAARTCRQRRTDRHDKMSH 90 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTC--
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhc
Confidence 35678999999999999999999999888763
No 14
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=96.49 E-value=0.0088 Score=38.10 Aligned_cols=39 Identities=31% Similarity=0.324 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 042014 89 QKHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEA 134 (169)
Q Consensus 89 q~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~ 134 (169)
|+|+.+||.++..|...|.+|-.++.- +..||.-||.-+
T Consensus 2 KaYl~eLE~r~k~le~~naeLEervst-------Lq~EN~mLRqvl 40 (42)
T 2oqq_A 2 SAYLSELENRVKDLENKNSELEERLST-------LQNENQMLRHIL 40 (42)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhHHHHHHHh
Confidence 579999999999999999988888765 566888877643
No 15
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=96.11 E-value=0.025 Score=37.50 Aligned_cols=49 Identities=29% Similarity=0.302 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 042014 91 HLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQ 139 (169)
Q Consensus 91 ~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~ 139 (169)
..+.|-.||+.|+.||..|++++..-+.++..++.|-.-+|+-+..|..
T Consensus 4 sYdQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk~lq~ 52 (54)
T 1deb_A 4 SYDQLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVLKQLQG 52 (54)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHcc
Confidence 3578999999999999999999999999999999988887776666543
No 16
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=95.67 E-value=0.1 Score=40.22 Aligned_cols=59 Identities=20% Similarity=0.160 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042014 87 RKQKHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTDLQ 145 (169)
Q Consensus 87 RKq~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l~ 145 (169)
+.+...+.|+.++..+..|...|..++..+..++..+..++..|+.++..|+..+..++
T Consensus 72 k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le 130 (138)
T 3hnw_A 72 KAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLE 130 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567888889999999999999999999988999999999999999999988887775
No 17
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=94.58 E-value=0.32 Score=34.76 Aligned_cols=54 Identities=15% Similarity=0.121 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042014 91 HLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTDL 144 (169)
Q Consensus 91 ~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l 144 (169)
-++.|+.+|..+-....-|+-++..|.++...+..+|..++.....|.+....+
T Consensus 7 lleqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qL 60 (81)
T 2jee_A 7 VFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHL 60 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 478899999999998888888888888888888888888666555555544443
No 18
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=94.42 E-value=0.2 Score=37.04 Aligned_cols=28 Identities=18% Similarity=0.459 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 042014 121 DKVIQENAELKVEATELRQMLTDLQLNS 148 (169)
Q Consensus 121 ~~l~~EN~~Lr~e~~~Lr~~L~~l~~~~ 148 (169)
.....+=..|++|+..||.+|..|+.+.
T Consensus 71 ~~~~~~~e~Lq~E~erLr~~v~~lEeg~ 98 (100)
T 1go4_E 71 QRLREDHSQLQAECERLRGLLRAMERGG 98 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 4455666788889999999988887654
No 19
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=94.42 E-value=0.26 Score=36.70 Aligned_cols=45 Identities=24% Similarity=0.252 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 042014 94 ELWSQVVWLRNENHQLVD-------KLNHVSGCHDKVIQENAELKVEATELR 138 (169)
Q Consensus 94 eLe~qV~~L~~eN~~L~~-------~l~~l~~~~~~l~~EN~~Lr~e~~~Lr 138 (169)
+|+..++.+..+|..|+. ++..|...+..|..||..|+.+-...+
T Consensus 41 ~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~~e~~~~~ 92 (104)
T 3s9g_A 41 ELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLLTENELHR 92 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 455555555555555554 555555555566666666665554444
No 20
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=94.20 E-value=0.24 Score=33.81 Aligned_cols=42 Identities=26% Similarity=0.234 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 042014 91 HLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKV 132 (169)
Q Consensus 91 ~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~ 132 (169)
-+..-+++|.+|..-|..|..++..++..++.+..||..||.
T Consensus 21 ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr~ 62 (63)
T 2w6a_A 21 ALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLRQ 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhcc
Confidence 455668899999999999999999999999999999999873
No 21
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=93.29 E-value=0.43 Score=31.10 Aligned_cols=38 Identities=26% Similarity=0.216 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 042014 96 WSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVE 133 (169)
Q Consensus 96 e~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e 133 (169)
+.++..|+.-|..|..++..+...|..+++|+.+|+.=
T Consensus 3 eq~l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~L 40 (48)
T 3vmx_A 3 ERQILRLKQINIQLATKIQHLEFSCSEKEQEIERLNKL 40 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 57899999999999999999999999999998888654
No 22
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=92.91 E-value=0.31 Score=32.75 Aligned_cols=38 Identities=26% Similarity=0.210 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 042014 96 WSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVE 133 (169)
Q Consensus 96 e~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e 133 (169)
+.++..|+..|..|..++++|..+|...++|+.+|..-
T Consensus 10 e~q~~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~~L 47 (58)
T 3a2a_A 10 ERQLLRLKQMNVQLAAKIQHLEFSCSEKEQEIERLNKL 47 (58)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56888999999999999999999999999988887653
No 23
>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y
Probab=92.57 E-value=0.82 Score=30.79 Aligned_cols=24 Identities=29% Similarity=0.394 Sum_probs=18.6
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHH
Q 042014 73 RMISNRESARRSRMRKQKHLDELW 96 (169)
Q Consensus 73 R~isNRESARRSR~RKq~~leeLe 96 (169)
..-+||.++|++|.|=+..++--.
T Consensus 5 kryknr~asrk~rakfkn~lqh~r 28 (63)
T 2c9l_Y 5 KRYKNRVAARKSRAKFKQLLQHYR 28 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456899999999999877665443
No 24
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=91.54 E-value=0.23 Score=30.08 Aligned_cols=26 Identities=19% Similarity=0.269 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 92 LDELWSQVVWLRNENHQLVDKLNHVS 117 (169)
Q Consensus 92 leeLe~qV~~L~~eN~~L~~~l~~l~ 117 (169)
|..||.+|+.|-.+|..|..++..|.
T Consensus 2 M~QLE~kVEeLl~~n~~Le~EV~RLk 27 (33)
T 3m48_A 2 MAQLEAKVEELLSKNWNLENEVARLK 27 (33)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 55677777777777666666655443
No 25
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=91.42 E-value=0.34 Score=29.47 Aligned_cols=26 Identities=19% Similarity=0.275 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 91 HLDELWSQVVWLRNENHQLVDKLNHV 116 (169)
Q Consensus 91 ~leeLe~qV~~L~~eN~~L~~~l~~l 116 (169)
+|..||.+|+.|-.+|..|..++..|
T Consensus 2 RMnQLE~kVEeLl~~n~~Le~eV~rL 27 (34)
T 2oxj_A 2 RMXQLEXKVXELLXKNXHLEXEVXRL 27 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 46677777777776666666655444
No 26
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=91.13 E-value=3.8 Score=40.47 Aligned_cols=60 Identities=17% Similarity=0.222 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042014 85 RMRKQKHLDELWSQVVWLRNENHQLVDKLNHVS----GCHDKVIQENAELKVEATELRQMLTDL 144 (169)
Q Consensus 85 R~RKq~~leeLe~qV~~L~~eN~~L~~~l~~l~----~~~~~l~~EN~~Lr~e~~~Lr~~L~~l 144 (169)
-...++.+++|+.++..+..|...|..++..+. +....|..||..|+.++.+|...+...
T Consensus 986 v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e~~~L~qq~~~l~~~~~~~ 1049 (1080)
T 2dfs_A 986 VLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQ 1049 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555555444443332 445566777777777777777554433
No 27
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=91.04 E-value=3.1 Score=31.75 Aligned_cols=55 Identities=13% Similarity=0.053 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 89 QKHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTD 143 (169)
Q Consensus 89 q~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~ 143 (169)
.+.++++..++..|..+...+.-++..+......+..++..|..++..|...+.+
T Consensus 81 ~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~~ 135 (138)
T 3hnw_A 81 SLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELND 135 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555666666666666666666666666666666667777777777666655543
No 28
>2kz5_A Transcription factor NF-E2 45 kDa subunit; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=90.23 E-value=0.02 Score=41.91 Aligned_cols=24 Identities=33% Similarity=0.286 Sum_probs=20.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHH
Q 042014 67 NERKQRRMISNRESARRSRMRKQK 90 (169)
Q Consensus 67 deRR~RR~isNRESARRSR~RKq~ 90 (169)
--|..||.-+||.+|+++|+||..
T Consensus 64 lIrdiRRRgKNKvAAqnCRKRKld 87 (91)
T 2kz5_A 64 LVRDIRRRGKNKVAAQNYRKRKLE 87 (91)
T ss_dssp HHHHHHHHHHHHHHTTSCCCCCCC
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHH
Confidence 456889999999999999999853
No 29
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=89.40 E-value=1.8 Score=27.61 Aligned_cols=40 Identities=30% Similarity=0.226 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 042014 91 HLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAEL 130 (169)
Q Consensus 91 ~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~L 130 (169)
.+..|+.+|..|+.||..|..+.-.-..-++.++.|=+-|
T Consensus 4 lvaqlenevaslenenetlkkknlhkkdliaylekeianl 43 (49)
T 3he5_A 4 LVAQLENEVASLENENETLKKKNLHKKDLIAYLEKEIANL 43 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccHHHHHhcccHHHHHHHHHHHHHHH
Confidence 3567899999999999999887655444444444443333
No 30
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=89.39 E-value=2.8 Score=29.64 Aligned_cols=43 Identities=12% Similarity=0.159 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 042014 92 LDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEA 134 (169)
Q Consensus 92 leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~ 134 (169)
+-+|..++..|+.|...|+..++.+..++..+......+...+
T Consensus 22 ~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dL 64 (83)
T 2xdj_A 22 LTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQI 64 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666666666555555555444444333
No 31
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=89.36 E-value=3.9 Score=28.91 Aligned_cols=56 Identities=23% Similarity=0.170 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 042014 92 LDELWSQVVWLRNENHQLVDKLN-------HVSGCHDKVIQENAELKVEATELRQMLTDLQLN 147 (169)
Q Consensus 92 leeLe~qV~~L~~eN~~L~~~l~-------~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l~~~ 147 (169)
+.++-.+|+.|-.||.+|...-+ .|..+.+.|..|+..|+.++..+++....++..
T Consensus 4 ~~gmgkevEnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~r 66 (77)
T 2w83_C 4 PEFMGREVENLILENTQLLETKNALNIVKNDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEK 66 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677888999999988876543 345678889999999999999988887777643
No 32
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=88.98 E-value=0.96 Score=27.76 Aligned_cols=28 Identities=18% Similarity=0.260 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042014 91 HLDELWSQVVWLRNENHQLVDKLNHVSG 118 (169)
Q Consensus 91 ~leeLe~qV~~L~~eN~~L~~~l~~l~~ 118 (169)
+|..|+.+|+.|-.+|..|..++..|..
T Consensus 2 RMnQLE~KVEeLl~~~~~Le~eV~RLk~ 29 (36)
T 1kd8_B 2 KVKQLKAKVEELKSKLWHLKNKVARLKK 29 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 5677888888887777777766655443
No 33
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=88.87 E-value=3 Score=29.02 Aligned_cols=47 Identities=13% Similarity=0.155 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 042014 94 ELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQM 140 (169)
Q Consensus 94 eLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~ 140 (169)
++..++..++.+|..|..++..+...+..-..+-..++.++..+-..
T Consensus 4 ~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~ 50 (72)
T 3cve_A 4 NSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEI 50 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777888888888888888777777666666666665554443
No 34
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=88.77 E-value=0.74 Score=28.36 Aligned_cols=30 Identities=23% Similarity=0.295 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 042014 103 RNENHQLVDKLNHVSGCHDKVIQENAELKV 132 (169)
Q Consensus 103 ~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~ 132 (169)
-.||.+|...+..-.++++.|..||..|.+
T Consensus 6 L~ENekLhk~ie~KdeeIa~Lk~eN~eL~E 35 (37)
T 1t6f_A 6 LKENEKLHKEIEQKDNEIARLKKENKELAE 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHh
Confidence 368999999999999999999999998864
No 35
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=88.62 E-value=1.1 Score=31.76 Aligned_cols=44 Identities=18% Similarity=0.237 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042014 102 LRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTDLQ 145 (169)
Q Consensus 102 L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l~ 145 (169)
--.||..|..++..+.+.+..+..||..|++-+...+....-++
T Consensus 32 aL~EN~~Lh~~ie~~~eEi~~LkeEN~~L~el~~~~~~laevl~ 75 (79)
T 2zxx_A 32 ALKENEKLHKEIEQKDSEIARLRKENKDLAEVAEHVQYMAEVIE 75 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34689999999999999999999999999887777776654443
No 36
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=88.55 E-value=0.8 Score=27.78 Aligned_cols=26 Identities=0% Similarity=0.079 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 91 HLDELWSQVVWLRNENHQLVDKLNHV 116 (169)
Q Consensus 91 ~leeLe~qV~~L~~eN~~L~~~l~~l 116 (169)
+|..||.+|+.|-.+|..|..++..|
T Consensus 2 RMnQLEdKVEeLl~~~~~Le~EV~RL 27 (34)
T 3c3f_A 2 RMXQIEXKLEXILSXLYHXENEXARI 27 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 46667777777766666666655544
No 37
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=88.15 E-value=1.4 Score=29.35 Aligned_cols=32 Identities=22% Similarity=0.279 Sum_probs=20.4
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042014 113 LNHVSGCHDKVIQENAELKVEATELRQMLTDL 144 (169)
Q Consensus 113 l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l 144 (169)
+..+......|..+|..|+.++..|+..+..|
T Consensus 25 ~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~L 56 (63)
T 1ci6_A 25 QEALTGECKELEKKNEALKERADSLAKEIQYL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555666667777777777777666554
No 38
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=88.02 E-value=1.6 Score=30.95 Aligned_cols=46 Identities=17% Similarity=0.177 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 042014 92 LDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATEL 137 (169)
Q Consensus 92 leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~L 137 (169)
.+++..++..++.+|..|..++..+...+..-..+-..++.++..+
T Consensus 8 ~e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l 53 (79)
T 3cvf_A 8 REETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRA 53 (79)
T ss_dssp --CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777777777777777777776666665555555554433
No 39
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=87.91 E-value=4.6 Score=29.62 Aligned_cols=9 Identities=22% Similarity=0.113 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 042014 125 QENAELKVE 133 (169)
Q Consensus 125 ~EN~~Lr~e 133 (169)
..|..|+++
T Consensus 83 ~kn~~L~~q 91 (97)
T 2eqb_B 83 ILNKRLTEQ 91 (97)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 40
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=87.88 E-value=1.6 Score=28.68 Aligned_cols=33 Identities=21% Similarity=0.308 Sum_probs=22.4
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042014 113 LNHVSGCHDKVIQENAELKVEATELRQMLTDLQ 145 (169)
Q Consensus 113 l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l~ 145 (169)
+..|......+..+|..|+.++..|+..+..|.
T Consensus 24 ~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk 56 (61)
T 1t2k_D 24 VQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLK 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666677777777777777777766654
No 41
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=87.34 E-value=1.1 Score=27.09 Aligned_cols=25 Identities=4% Similarity=0.162 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 92 LDELWSQVVWLRNENHQLVDKLNHV 116 (169)
Q Consensus 92 leeLe~qV~~L~~eN~~L~~~l~~l 116 (169)
|..||.+|+.|-.+|..|..++..|
T Consensus 2 MnQLEdKvEeLl~~~~~Le~EV~RL 26 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXENXLARI 26 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHH
Confidence 4566667766666666655555443
No 42
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=86.47 E-value=1.7 Score=29.94 Aligned_cols=35 Identities=20% Similarity=0.266 Sum_probs=21.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 109 LVDKLNHVSGCHDKVIQENAELKVEATELRQMLTD 143 (169)
Q Consensus 109 L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~ 143 (169)
|..++..+......+..||..|+.++..|+..+..
T Consensus 34 LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~ 68 (70)
T 1gd2_E 34 LETQVVTLKELHSSTTLENDQLRQKVRQLEEELRI 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444455667777777777777766654
No 43
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=86.41 E-value=1 Score=30.17 Aligned_cols=32 Identities=13% Similarity=0.387 Sum_probs=23.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 111 DKLNHVSGCHDKVIQENAELKVEATELRQMLT 142 (169)
Q Consensus 111 ~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~ 142 (169)
..+..|..+...|..+|..|+.++..|+..|.
T Consensus 30 ~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 30 QRMKQLEDKVEELLSKNYHLENEVARLKKLVG 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566666777788899999999999988764
No 44
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=86.04 E-value=1.7 Score=28.60 Aligned_cols=34 Identities=21% Similarity=0.336 Sum_probs=24.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042014 112 KLNHVSGCHDKVIQENAELKVEATELRQMLTDLQ 145 (169)
Q Consensus 112 ~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l~ 145 (169)
.+..|......+..+|..|+.++..|+..+..|.
T Consensus 23 ~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk 56 (62)
T 1jnm_A 23 RIARLEEKVKTLKAQNSELASTANMLREQVAQLK 56 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666777888888888888888776654
No 45
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=86.01 E-value=1 Score=27.30 Aligned_cols=26 Identities=8% Similarity=0.330 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 91 HLDELWSQVVWLRNENHQLVDKLNHV 116 (169)
Q Consensus 91 ~leeLe~qV~~L~~eN~~L~~~l~~l 116 (169)
+|..||.+|+.|-.+|..|..++..+
T Consensus 2 RMnQLEdKvEeLl~~~~~L~~EV~RL 27 (34)
T 2bni_A 2 RMKQIEDKLEEILSKGHHICNELARI 27 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHccHHHHHHHHHH
Confidence 45667777777776666666665544
No 46
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=85.99 E-value=2 Score=30.12 Aligned_cols=26 Identities=23% Similarity=0.236 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 91 HLDELWSQVVWLRNENHQLVDKLNHV 116 (169)
Q Consensus 91 ~leeLe~qV~~L~~eN~~L~~~l~~l 116 (169)
.+++|+.+=..|+.+...|..++..|
T Consensus 44 r~~~L~~eN~~L~~~v~~L~~E~~~L 69 (78)
T 1gu4_A 44 KVLELTAENERLQKKVEQLSRELSTL 69 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444
No 47
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=85.98 E-value=1.3 Score=26.80 Aligned_cols=30 Identities=13% Similarity=0.277 Sum_probs=23.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 113 LNHVSGCHDKVIQENAELKVEATELRQMLT 142 (169)
Q Consensus 113 l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~ 142 (169)
.++|..+...|..+|..|..++..|+..|.
T Consensus 3 MnQLE~kVEeLl~~n~~Le~eV~rLk~ll~ 32 (34)
T 2oxj_A 3 MXQLEXKVXELLXKNXHLEXEVXRLKXLVX 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 345666677788899999999998887763
No 48
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=85.82 E-value=1.4 Score=26.52 Aligned_cols=26 Identities=4% Similarity=0.022 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 92 LDELWSQVVWLRNENHQLVDKLNHVS 117 (169)
Q Consensus 92 leeLe~qV~~L~~eN~~L~~~l~~l~ 117 (169)
|..||.+|+.|-.+|..|..++..+.
T Consensus 2 MnQLEdKVEell~~~~~le~EV~Rl~ 27 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNTNEIARNT 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 56788888888777777777665543
No 49
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=85.62 E-value=1.3 Score=27.14 Aligned_cols=27 Identities=15% Similarity=0.244 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 91 HLDELWSQVVWLRNENHQLVDKLNHVS 117 (169)
Q Consensus 91 ~leeLe~qV~~L~~eN~~L~~~l~~l~ 117 (169)
+|..|+.+|+.|-.+|..|..++..|.
T Consensus 2 RMnQLE~kVEeLl~~~~~Le~EV~RL~ 28 (36)
T 1kd8_A 2 EVKQLEAEVEEIESEVWHLENEVARLE 28 (36)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 466788888888777777776665544
No 50
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=85.28 E-value=0.98 Score=27.27 Aligned_cols=28 Identities=14% Similarity=0.360 Sum_probs=22.4
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 114 NHVSGCHDKVIQENAELKVEATELRQML 141 (169)
Q Consensus 114 ~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L 141 (169)
++|..+...|..+|..|..|+..|+..|
T Consensus 3 ~QLE~kVEeLl~~n~~Le~EV~RLk~Ll 30 (33)
T 3m48_A 3 AQLEAKVEELLSKNWNLENEVARLKKLV 30 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 3555667778889999999999998765
No 51
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=84.90 E-value=6.1 Score=29.30 Aligned_cols=29 Identities=28% Similarity=0.234 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 89 QKHLDELWSQVVWLRNENHQLVDKLNHVS 117 (169)
Q Consensus 89 q~~leeLe~qV~~L~~eN~~L~~~l~~l~ 117 (169)
-..+.+|+.+|..|+.||+.|+.+.....
T Consensus 64 ~~~v~eLe~everL~~ENq~L~~e~~~~~ 92 (104)
T 3s9g_A 64 DARVRELELELDRLRAENLQLLTENELHR 92 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 56788999999999999999888765543
No 52
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=84.83 E-value=1.3 Score=26.88 Aligned_cols=27 Identities=19% Similarity=0.255 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 91 HLDELWSQVVWLRNENHQLVDKLNHVS 117 (169)
Q Consensus 91 ~leeLe~qV~~L~~eN~~L~~~l~~l~ 117 (169)
+|..|+.+|+.|-.+|..|..++..|.
T Consensus 2 RMnQLEdkVEeLl~~~~~Le~eV~RL~ 28 (34)
T 2hy6_A 2 KVKQLADAVEELASANYHLANAVARLA 28 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 456677777777777777666665543
No 53
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=84.68 E-value=1.3 Score=26.85 Aligned_cols=26 Identities=4% Similarity=0.092 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 91 HLDELWSQVVWLRNENHQLVDKLNHV 116 (169)
Q Consensus 91 ~leeLe~qV~~L~~eN~~L~~~l~~l 116 (169)
+|..||.+|+.|-.+|..|..++..+
T Consensus 2 RM~QLEdKVEeLl~~n~~Le~EV~RL 27 (34)
T 1uo4_A 2 RMKQIEDKGEEILSKLYHIENELARI 27 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHH
Confidence 35567777777766666666665544
No 54
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=84.64 E-value=6.2 Score=28.14 Aligned_cols=33 Identities=18% Similarity=0.344 Sum_probs=19.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042014 113 LNHVSGCHDKVIQENAELKVEATELRQMLTDLQ 145 (169)
Q Consensus 113 l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l~ 145 (169)
|..|..++..+..||..|..++..|+..+..++
T Consensus 58 i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k 90 (93)
T 3s4r_A 58 MRELRRQVDQLTNDKARVEVERDNLAEDIMRLR 90 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555566666666666666666555543
No 55
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=84.49 E-value=6.4 Score=29.93 Aligned_cols=33 Identities=30% Similarity=0.269 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 042014 99 VVWLRNENHQLVDKLNHVSGCHDKVIQENAELK 131 (169)
Q Consensus 99 V~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr 131 (169)
|..|+.|+..|..+|........++..+|..|.
T Consensus 73 vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~ 105 (121)
T 3mq7_A 73 VEELEGEITTLNHKLQDASAEVERLRRENQVLS 105 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhh
Confidence 444554444444444444444444444444433
No 56
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=84.48 E-value=5.8 Score=32.10 Aligned_cols=51 Identities=14% Similarity=0.154 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 92 LDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLT 142 (169)
Q Consensus 92 leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~ 142 (169)
+..|+.++..|+..+..|...|..|....+.+....+..-+-+..+..++.
T Consensus 90 ~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln 140 (189)
T 2v71_A 90 VSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLN 140 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHH
Confidence 445555555555555555555555555555555555555555555555543
No 57
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=84.43 E-value=2.1 Score=27.94 Aligned_cols=20 Identities=20% Similarity=0.335 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 042014 97 SQVVWLRNENHQLVDKLNHV 116 (169)
Q Consensus 97 ~qV~~L~~eN~~L~~~l~~l 116 (169)
..|+.|+.||..|+.++..|
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L 38 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAI 38 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 45666666666666655443
No 58
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=84.06 E-value=7.7 Score=31.35 Aligned_cols=20 Identities=10% Similarity=0.295 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 042014 125 QENAELKVEATELRQMLTDL 144 (169)
Q Consensus 125 ~EN~~Lr~e~~~Lr~~L~~l 144 (169)
.|...|+.....|+..|.++
T Consensus 95 ~el~~l~~~~~~l~~~ireL 114 (189)
T 2v71_A 95 DDLSQTRAIKEQLHKYVREL 114 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444433
No 59
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=83.87 E-value=3.7 Score=28.60 Aligned_cols=50 Identities=16% Similarity=0.102 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 042014 90 KHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTDLQL 146 (169)
Q Consensus 90 ~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l~~ 146 (169)
.++.+||.+++.+..-...|...+..- ..+-..|+.++..|..+|.++..
T Consensus 14 ~Ri~~LE~klAfqE~tIeeLn~~v~~Q-------q~~Id~L~~ql~~L~~rl~~~~~ 63 (78)
T 3efg_A 14 ARLVELETRLSFQEQALTELSEALADA-------RLTGARNAELIRHLLEDLGKVRS 63 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhhh
Confidence 456677777777766665555555444 34445555666666666665553
No 60
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=83.86 E-value=9.5 Score=30.38 Aligned_cols=58 Identities=21% Similarity=0.244 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042014 81 ARRSRMRKQKHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTDLQ 145 (169)
Q Consensus 81 ARRSR~RKq~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l~ 145 (169)
=|+.|.+-.+.+.+|+.++..|..+...+ ......+..||..|-+.+..|...-..+.
T Consensus 81 Er~~r~q~se~~~elq~ri~~L~~El~~~-------k~~~~k~~~e~r~L~Ekl~~lEKe~a~~e 138 (168)
T 3o0z_A 81 ERRDRGHDSEMIGDLQARITSLQEEVKHL-------KHNLEKVEGERKEAQDMLNHSEKEKNNLE 138 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34445555555555555555555544444 44445566667776666666665544443
No 61
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=83.19 E-value=8.7 Score=26.72 Aligned_cols=58 Identities=19% Similarity=0.145 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042014 88 KQKHLDELWSQVVWLRNENHQLVDKLNHVS------GCHDKVIQENAELKVEATELRQMLTDLQ 145 (169)
Q Consensus 88 Kq~~leeLe~qV~~L~~eN~~L~~~l~~l~------~~~~~l~~EN~~Lr~e~~~Lr~~L~~l~ 145 (169)
-|+.++.|+.++..|..+...|...+..-. ..+..+..+=..+..++..+-.++..|.
T Consensus 20 eqrEle~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~erWeeLe 83 (89)
T 2lw1_A 20 LQRELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFERWEYLE 83 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456799999999999999999999986421 3566777788888888888888877654
No 62
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=82.87 E-value=4.2 Score=28.30 Aligned_cols=11 Identities=9% Similarity=0.286 Sum_probs=4.6
Q ss_pred HHHHHHHHHHh
Q 042014 134 ATELRQMLTDL 144 (169)
Q Consensus 134 ~~~Lr~~L~~l 144 (169)
+..|++.|..|
T Consensus 44 Id~L~~ql~~L 54 (78)
T 3efg_A 44 GARNAELIRHL 54 (78)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34444444443
No 63
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=82.60 E-value=2.5 Score=29.94 Aligned_cols=42 Identities=29% Similarity=0.291 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 042014 93 DELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEA 134 (169)
Q Consensus 93 eeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~ 134 (169)
++|-.+|.+|..|+..|+.++..+.+....+...+..|.+++
T Consensus 33 ~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeEl 74 (77)
T 2w83_C 33 NDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEEL 74 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666666666555555555444444443
No 64
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=82.55 E-value=2.5 Score=26.74 Aligned_cols=26 Identities=31% Similarity=0.284 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 88 KQKHLDELWSQVVWLRNENHQLVDKL 113 (169)
Q Consensus 88 Kq~~leeLe~qV~~L~~eN~~L~~~l 113 (169)
......+|+.+|..|..||..|+.-+
T Consensus 15 le~~naeLEervstLq~EN~mLRqvl 40 (42)
T 2oqq_A 15 LENKNSELEERLSTLQNENQMLRHIL 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 34567899999999999999998765
No 65
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=81.96 E-value=2.6 Score=25.41 Aligned_cols=29 Identities=3% Similarity=0.098 Sum_probs=22.6
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 114 NHVSGCHDKVIQENAELKVEATELRQMLT 142 (169)
Q Consensus 114 ~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~ 142 (169)
++|..+...+..+|..|..++..|+..|.
T Consensus 3 nQLEdKvEeLl~~~~~Le~EV~RLk~lL~ 31 (33)
T 3c3g_A 3 KXIEXKLXEIXSKXYHXENXLARIKXLLX 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 45556667788899999999999988763
No 66
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=81.87 E-value=1.5 Score=28.55 Aligned_cols=30 Identities=13% Similarity=0.160 Sum_probs=23.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 112 KLNHVSGCHDKVIQENAELKVEATELRQML 141 (169)
Q Consensus 112 ~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L 141 (169)
.+..|..+...|..||..|+.++..|+..+
T Consensus 23 ~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~ 52 (55)
T 1dh3_A 23 YVKSLENRVAVLENQNKTLIEELKALKDLY 52 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355666677778889999999998887654
No 67
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=81.65 E-value=17 Score=28.50 Aligned_cols=51 Identities=8% Similarity=-0.104 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 042014 88 KQKHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELR 138 (169)
Q Consensus 88 Kq~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr 138 (169)
....+.+-..-+..|..|...|.-+++.+..+...+..||..|-.....-.
T Consensus 87 Leeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM~rk 137 (152)
T 3a7p_A 87 LKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARWLKKT 137 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555677788888888888999998899999999988766554433
No 68
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=81.45 E-value=2.3 Score=35.91 Aligned_cols=26 Identities=19% Similarity=0.345 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 91 HLDELWSQVVWLRNENHQLVDKLNHV 116 (169)
Q Consensus 91 ~leeLe~qV~~L~~eN~~L~~~l~~l 116 (169)
.+.+|+.++..|...|..|...++.+
T Consensus 55 ~l~eL~~ql~~L~arNe~L~~~Lk~a 80 (251)
T 3m9b_A 55 DIHQLEARIDSLAARNSKLMETLKEA 80 (251)
T ss_dssp HHHHHHHHHHHHTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666665555555443
No 69
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=81.29 E-value=4.6 Score=28.88 Aligned_cols=36 Identities=22% Similarity=0.259 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 042014 102 LRNENHQLVDKLNHVSGCHDKVIQENAELKVEATEL 137 (169)
Q Consensus 102 L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~L 137 (169)
--.||..|...+..+.+....+..+|..|+.-+...
T Consensus 44 aL~EN~~Lh~~ie~l~eEi~~lk~en~eL~elae~~ 79 (83)
T 1uii_A 44 ALKENEKLHKEIEQKDNEIARLKKENKELAEVAEHV 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345788888888877776666666666666544443
No 70
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=80.99 E-value=2.9 Score=25.33 Aligned_cols=30 Identities=7% Similarity=0.170 Sum_probs=23.1
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 113 LNHVSGCHDKVIQENAELKVEATELRQMLT 142 (169)
Q Consensus 113 l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~ 142 (169)
.++|..+...+..+|..|..++..|+..|.
T Consensus 3 MnQLEdKVEeLl~~~~~Le~EV~RLk~ll~ 32 (34)
T 3c3f_A 3 MXQIEXKLEXILSXLYHXENEXARIXKLLX 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 345566677788899999999999887763
No 71
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=80.98 E-value=12 Score=27.97 Aligned_cols=52 Identities=15% Similarity=0.170 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 91 HLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLT 142 (169)
Q Consensus 91 ~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~ 142 (169)
.+..|+.++..|+..+..|...|..|.+..+.++...+..-+-+.++..++.
T Consensus 36 ~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n 87 (111)
T 2v66_B 36 QVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLN 87 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHH
Confidence 3556777777777777777777777777777777666666666666665553
No 72
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=80.64 E-value=2.4 Score=24.74 Aligned_cols=22 Identities=27% Similarity=0.299 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 042014 120 HDKVIQENAELKVEATELRQML 141 (169)
Q Consensus 120 ~~~l~~EN~~Lr~e~~~Lr~~L 141 (169)
+..+++||.+|++.+.+|-.++
T Consensus 8 lasleaenkqlkakveellakv 29 (31)
T 1p9i_A 8 LASLEAENKQLKAKVEELLAKV 29 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3456677777777777765543
No 73
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=80.15 E-value=9.7 Score=24.68 Aligned_cols=25 Identities=20% Similarity=0.353 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 92 LDELWSQVVWLRNENHQLVDKLNHV 116 (169)
Q Consensus 92 leeLe~qV~~L~~eN~~L~~~l~~l 116 (169)
+.+|..++..|...|..|...+...
T Consensus 11 ~~~l~~~l~~L~~rN~rL~~~L~~A 35 (51)
T 3m91_A 11 IHQLEARIDSLAARNSKLMETLKEA 35 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666665555554443
No 74
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=80.13 E-value=20 Score=28.19 Aligned_cols=60 Identities=15% Similarity=0.109 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 84 SRMRKQKHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTD 143 (169)
Q Consensus 84 SR~RKq~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~ 143 (169)
-+......+.+|+..+..-...+..|..++..|.-++..++.....|++|-..|=++|..
T Consensus 76 El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM~ 135 (152)
T 3a7p_A 76 ELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARWLK 135 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456677777777777778888888888888888888888888888888888877743
No 75
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=79.99 E-value=1.2 Score=31.49 Aligned_cols=29 Identities=21% Similarity=0.237 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 042014 105 ENHQLVDKLNHVSGCHDKVIQENAELKVE 133 (169)
Q Consensus 105 eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e 133 (169)
|...|+.+|..|.++...|+.||..||.-
T Consensus 16 EVevLKe~I~EL~e~~~qLE~EN~~Lk~~ 44 (78)
T 1dip_A 16 EVEILKEQIRELVEKNSQLERENTLLKTL 44 (78)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455666666666667777888888764
No 76
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=79.88 E-value=2.3 Score=24.33 Aligned_cols=24 Identities=33% Similarity=0.439 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 042014 122 KVIQENAELKVEATELRQMLTDLQ 145 (169)
Q Consensus 122 ~l~~EN~~Lr~e~~~Lr~~L~~l~ 145 (169)
++.+.|++|+.+++.|...+.++.
T Consensus 4 rlkqknarlkqeiaaleyeiaale 27 (28)
T 3ra3_B 4 RLKQKNARLKQEIAALEYEIAALE 27 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHhhhHHHHHHHHHHHHHHHhc
Confidence 456678888888888887777653
No 77
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=79.57 E-value=4.3 Score=26.37 Aligned_cols=24 Identities=21% Similarity=0.142 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 042014 121 DKVIQENAELKVEATELRQMLTDL 144 (169)
Q Consensus 121 ~~l~~EN~~Lr~e~~~Lr~~L~~l 144 (169)
..|..||..|+.++..|...+.++
T Consensus 22 eaLk~E~~eLk~k~~~L~~~~~el 45 (53)
T 2yy0_A 22 ELLRLELAEMKEKYEAIVEENKKL 45 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444433
No 78
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=79.07 E-value=20 Score=35.39 Aligned_cols=27 Identities=11% Similarity=0.175 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042014 119 CHDKVIQENAELKVEATELRQMLTDLQ 145 (169)
Q Consensus 119 ~~~~l~~EN~~Lr~e~~~Lr~~L~~l~ 145 (169)
.+..+..+...|..++.++...+..+.
T Consensus 914 ~l~~l~~~~~~Le~~l~ele~elee~e 940 (1184)
T 1i84_S 914 MRVRLAAKKQELEEILHEMEARIEEEE 940 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555555555555555554433
No 79
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=78.78 E-value=26 Score=34.58 Aligned_cols=28 Identities=21% Similarity=0.216 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 042014 92 LDELWSQVVWLRNENHQLVDKLNHVSGC 119 (169)
Q Consensus 92 leeLe~qV~~L~~eN~~L~~~l~~l~~~ 119 (169)
+..|+.+++.|+.+...+.++...+.+.
T Consensus 986 v~~L~~e~~~l~~~~~~~~ke~~~lee~ 1013 (1080)
T 2dfs_A 986 VLSLQEEIAKLRKELHQTQTEKKTIEEW 1013 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444333
No 80
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=78.55 E-value=16 Score=26.99 Aligned_cols=50 Identities=12% Similarity=0.157 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 93 DELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLT 142 (169)
Q Consensus 93 eeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~ 142 (169)
+-|.-.+..+.....++++++......+..+......|+.++..|+..|.
T Consensus 33 dlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~ 82 (103)
T 4h22_A 33 DTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALK 82 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444455555555555555543
No 81
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=78.54 E-value=1.9 Score=28.23 Aligned_cols=25 Identities=24% Similarity=0.343 Sum_probs=11.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHH
Q 042014 116 VSGCHDKVIQENAELKVEATELRQM 140 (169)
Q Consensus 116 l~~~~~~l~~EN~~Lr~e~~~Lr~~ 140 (169)
+...+..+..||..|+.++..|..+
T Consensus 32 v~~~~~~l~~e~~~L~~~~~~l~~~ 56 (57)
T 2wuj_A 32 VRKDYEIVLRKKTELEAKVNELDER 56 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3334445555555555555555443
No 82
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=77.85 E-value=11 Score=27.85 Aligned_cols=11 Identities=36% Similarity=0.670 Sum_probs=6.1
Q ss_pred HHHHHHHHHHh
Q 042014 67 NERKQRRMISN 77 (169)
Q Consensus 67 deRR~RR~isN 77 (169)
++|=++-|++|
T Consensus 8 EEKyrKAMVsn 18 (103)
T 4h22_A 8 EEKYKKAMVSN 18 (103)
T ss_dssp CCTHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44455556665
No 83
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=76.87 E-value=4.7 Score=24.42 Aligned_cols=27 Identities=11% Similarity=0.140 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 91 HLDELWSQVVWLRNENHQLVDKLNHVS 117 (169)
Q Consensus 91 ~leeLe~qV~~L~~eN~~L~~~l~~l~ 117 (169)
+|..|+.+|+.|-.++..|..++..|.
T Consensus 2 RMnQledKvEel~~~~~~l~nEv~Rl~ 28 (34)
T 2r2v_A 2 KLKQVADKLEEVASKLYHNANELARVA 28 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 456677777777777666666655443
No 84
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=76.17 E-value=5.9 Score=23.37 Aligned_cols=26 Identities=23% Similarity=0.274 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 92 LDELWSQVVWLRNENHQLVDKLNHVS 117 (169)
Q Consensus 92 leeLe~qV~~L~~eN~~L~~~l~~l~ 117 (169)
+..|+.+|.+.+++|-+|..++.++.
T Consensus 3 vaqlekevaqaeaenyqleqevaqle 28 (33)
T 1fmh_A 3 VAQLEKEVAQAEAENYQLEQEVAQLE 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 34566666666666666666555543
No 85
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=76.00 E-value=3.2 Score=23.72 Aligned_cols=25 Identities=28% Similarity=0.401 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 042014 121 DKVIQENAELKVEATELRQMLTDLQ 145 (169)
Q Consensus 121 ~~l~~EN~~Lr~e~~~Lr~~L~~l~ 145 (169)
+.++-||..|...++.|.+++..++
T Consensus 3 dalefendaleqkiaalkqkiaslk 27 (28)
T 3ra3_A 3 DALEFENDALEQKIAALKQKIASLK 27 (28)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHhccHHHHHHHHHHHHHHHHhc
Confidence 4566778888888888888777654
No 86
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=75.83 E-value=24 Score=30.45 Aligned_cols=25 Identities=28% Similarity=0.214 Sum_probs=11.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 117 SGCHDKVIQENAELKVEATELRQML 141 (169)
Q Consensus 117 ~~~~~~l~~EN~~Lr~e~~~Lr~~L 141 (169)
++....+..||++|+.++.++-..+
T Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (487)
T 3oja_A 441 QHKETQLAEENARLKKLNGEADLAL 465 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHhhhhhhhhhhhhhhh
Confidence 3344444445555554444444433
No 87
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=75.34 E-value=13 Score=32.66 Aligned_cols=27 Identities=15% Similarity=0.156 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 042014 93 DELWSQVVWLRNENHQLVDKLNHVSGC 119 (169)
Q Consensus 93 eeLe~qV~~L~~eN~~L~~~l~~l~~~ 119 (169)
+.|+.++..|+.+...|..++..+...
T Consensus 6 ~~~~~~~~~l~~~~~~l~~~~~~~~~~ 32 (403)
T 4etp_A 6 AALKEKIAALKEKIAALKEKIKDTELG 32 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444433
No 88
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=75.30 E-value=20 Score=27.20 Aligned_cols=54 Identities=13% Similarity=0.110 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042014 92 LDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTDLQ 145 (169)
Q Consensus 92 leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l~ 145 (169)
.+.|+.+..+-.....+|..+|..|.+++....+|=.+||.+...|..+|..-.
T Consensus 59 ~~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~~~~~ 112 (121)
T 3mq7_A 59 MASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRRENQVLSVRIADKK 112 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHhhhcc
Confidence 445555555556667788888888888888888888888888877777765443
No 89
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=74.70 E-value=3.9 Score=24.75 Aligned_cols=28 Identities=7% Similarity=0.318 Sum_probs=21.6
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 114 NHVSGCHDKVIQENAELKVEATELRQML 141 (169)
Q Consensus 114 ~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L 141 (169)
+++..+...+..+|..|..|+..|+..|
T Consensus 4 ~QLEdKVEeLl~~n~~Le~EV~RLk~LL 31 (34)
T 1uo4_A 4 KQIEDKGEEILSKLYHIENELARIKKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 4555666778888999999998888765
No 90
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=74.34 E-value=15 Score=23.91 Aligned_cols=50 Identities=18% Similarity=0.272 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 93 DELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLT 142 (169)
Q Consensus 93 eeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~ 142 (169)
.++...+..|+.+...++..+......+..|..=--.|..|++..|..|.
T Consensus 3 ~~~q~~i~~le~el~~~r~e~~~q~~eYq~LlniK~~Le~EIatYRkLLE 52 (59)
T 1gk6_A 3 KQLEDKVEELLSKNYHLENEVARLKKLVGDLLNVKMALDIEIATYRKLLE 52 (59)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHc
Confidence 34556666666666666666766666777777777788888888887774
No 91
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=74.32 E-value=15 Score=23.78 Aligned_cols=11 Identities=18% Similarity=0.323 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q 042014 131 KVEATELRQML 141 (169)
Q Consensus 131 r~e~~~Lr~~L 141 (169)
|.++..|+..|
T Consensus 36 R~el~~Lkeel 46 (51)
T 3m91_A 36 RQQLLALREEV 46 (51)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 92
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=74.32 E-value=4.4 Score=27.73 Aligned_cols=27 Identities=22% Similarity=0.185 Sum_probs=13.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042014 118 GCHDKVIQENAELKVEATELRQMLTDL 144 (169)
Q Consensus 118 ~~~~~l~~EN~~Lr~e~~~Lr~~L~~l 144 (169)
.....+..|...|+.+...|+++|..+
T Consensus 54 ~~~~~l~~e~~~L~~~~~~L~~~l~~L 80 (83)
T 1nkp_B 54 RKNHTHQQDIDDLKRQNALLEQQVRAL 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444445555555555555555443
No 93
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=74.10 E-value=1.6 Score=36.08 Aligned_cols=32 Identities=25% Similarity=0.329 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHH
Q 042014 101 WLRNENHQLVDKLNHVSGC---HDKVIQENAELKV 132 (169)
Q Consensus 101 ~L~~eN~~L~~~l~~l~~~---~~~l~~EN~~Lr~ 132 (169)
.|..||.+|+.++..+... +..+..||.+||+
T Consensus 23 ~l~~eN~~Lk~e~~~l~~~~~~~~~l~~En~rLr~ 57 (255)
T 2j5u_A 23 NTYTENQHLKERLEELAQLESEVADLKKENKDLKE 57 (255)
T ss_dssp ---CTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666655544432 2334444544443
No 94
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=74.02 E-value=7.7 Score=23.71 Aligned_cols=30 Identities=10% Similarity=0.144 Sum_probs=20.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 114 NHVSGCHDKVIQENAELKVEATELRQMLTD 143 (169)
Q Consensus 114 ~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~ 143 (169)
++|..+...|..+|..|..++..|+..+..
T Consensus 4 nQLE~KVEeLl~~~~~Le~eV~RLk~ll~~ 33 (36)
T 1kd8_B 4 KQLKAKVEELKSKLWHLKNKVARLKKKNAE 33 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 344445556677788888888888877764
No 95
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=73.85 E-value=5 Score=23.41 Aligned_cols=27 Identities=30% Similarity=0.384 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042014 92 LDELWSQVVWLRNENHQLVDKLNHVSG 118 (169)
Q Consensus 92 leeLe~qV~~L~~eN~~L~~~l~~l~~ 118 (169)
++.|..-+..|++||.+|..+++.+..
T Consensus 1 mdqlnallasleaenkqlkakveella 27 (31)
T 1p9i_A 1 MDQLNALLASLEAENKQLKAKVEELLA 27 (31)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677788899999999988877643
No 96
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=73.44 E-value=13 Score=32.54 Aligned_cols=51 Identities=16% Similarity=0.115 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 042014 88 KQKHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELR 138 (169)
Q Consensus 88 Kq~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr 138 (169)
.+..+..|+.++..|..+...+..++..+.+++.....+-..|.-++.+|+
T Consensus 8 ~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elk 58 (403)
T 4etp_A 8 LKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELR 58 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 456677777777777777777777777777666655555555544444444
No 97
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=73.39 E-value=21 Score=25.06 Aligned_cols=37 Identities=22% Similarity=0.204 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 042014 86 MRKQKHLDELWSQVVWLRNENHQLVDKLNHVSGCHDK 122 (169)
Q Consensus 86 ~RKq~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~ 122 (169)
..=+..++.|..+|..|+..++.+..+++.+.++...
T Consensus 23 ~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd 59 (83)
T 2xdj_A 23 TQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQ 59 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666666666666666666554333
No 98
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=72.92 E-value=12 Score=32.99 Aligned_cols=24 Identities=25% Similarity=0.311 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 93 DELWSQVVWLRNENHQLVDKLNHV 116 (169)
Q Consensus 93 eeLe~qV~~L~~eN~~L~~~l~~l 116 (169)
++|+.++..|+.....|..++..+
T Consensus 6 ~~l~~el~~~~~~~~~l~~~~~~~ 29 (412)
T 3u06_A 6 AALSTEVVHLRQRTEELLRCNEQQ 29 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444433
No 99
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=72.79 E-value=25 Score=25.60 Aligned_cols=72 Identities=15% Similarity=0.116 Sum_probs=53.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 042014 76 SNRESARRSRMRKQKHLDELWSQVVWLR---NENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTDLQLN 147 (169)
Q Consensus 76 sNRESARRSR~RKq~~leeLe~qV~~L~---~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l~~~ 147 (169)
.|-.+|-..=..|+..+++|...+..++ ..+..|..++..-...+..-.+.=.++.++...|...|..++.+
T Consensus 9 ~~L~~aEeaL~~kq~~id~lke~~~q~~~~~E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~lq~q 83 (94)
T 3jsv_C 9 QQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQRE 83 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 4455666677779999999999888888 55666888877777766666666667777777777777777655
No 100
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=72.54 E-value=27 Score=26.03 Aligned_cols=57 Identities=14% Similarity=0.174 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhHH-------HHHHHHHHHHHHHHHHHHHHHH
Q 042014 86 MRKQKHLDELWSQVVWLRN---ENHQLVDKLNHVSGCH-------DKVIQENAELKVEATELRQMLT 142 (169)
Q Consensus 86 ~RKq~~leeLe~qV~~L~~---eN~~L~~~l~~l~~~~-------~~l~~EN~~Lr~e~~~Lr~~L~ 142 (169)
..|+..+++|..++..++. ....|..++..-...+ ..+..|...|..++..|+.++.
T Consensus 41 ~~Kq~~idelk~ei~q~~~~lE~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q~~ 107 (110)
T 2v4h_A 41 VAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFN 107 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3355556666655555555 3333444444433333 3344555555555555555443
No 101
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=72.53 E-value=4.2 Score=24.62 Aligned_cols=29 Identities=7% Similarity=0.298 Sum_probs=21.6
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 114 NHVSGCHDKVIQENAELKVEATELRQMLT 142 (169)
Q Consensus 114 ~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~ 142 (169)
+++..+...+..+|..|..++..|+..|.
T Consensus 4 nQLEdKvEeLl~~~~~L~~EV~RLk~lL~ 32 (34)
T 2bni_A 4 KQIEDKLEEILSKGHHICNELARIKKLLG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred hHHHHHHHHHHHccHHHHHHHHHHHHHhc
Confidence 45555666788889999999988887654
No 102
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=71.88 E-value=8.7 Score=26.59 Aligned_cols=20 Identities=25% Similarity=0.438 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 042014 122 KVIQENAELKVEATELRQML 141 (169)
Q Consensus 122 ~l~~EN~~Lr~e~~~Lr~~L 141 (169)
.+..|...|+.+...|+++|
T Consensus 58 ~l~~e~~~L~~e~~~L~~~L 77 (80)
T 1nlw_A 58 KAVHQIDQLQREQRHLKRQL 77 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444
No 103
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=71.86 E-value=21 Score=24.38 Aligned_cols=54 Identities=11% Similarity=0.023 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 90 KHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTD 143 (169)
Q Consensus 90 ~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~ 143 (169)
..++.++.++.........+-.++..|...+..+..+=......+......|..
T Consensus 20 ~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLee 73 (81)
T 1ic2_A 20 DRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLEL 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555554555555555554444444444444445555544443
No 104
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=71.60 E-value=11 Score=27.58 Aligned_cols=39 Identities=18% Similarity=0.204 Sum_probs=28.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 042014 112 KLNHVSGCHDKVIQENAELKVEATELRQMLTDLQLNSHY 150 (169)
Q Consensus 112 ~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l~~~~~~ 150 (169)
++..+...+..|..||..|+.++..|..+|....+..-|
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~ 51 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDY 51 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 556666667777888888888888888888776655544
No 105
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=71.58 E-value=24 Score=25.02 Aligned_cols=59 Identities=17% Similarity=0.280 Sum_probs=35.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042014 77 NRESARRSRMRKQKHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTDLQ 145 (169)
Q Consensus 77 NRESARRSR~RKq~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l~ 145 (169)
|=.||=.+-.+-|+- +..++...+..|..+..++.. ....|..|..++..|+..+.+++
T Consensus 14 eLQSALeaEIqAKQ~---i~EELs~vr~~ni~~eskL~e-------ae~rn~eL~~e~~~l~~~~eelq 72 (81)
T 1wt6_A 14 ELQEALEEEVLTRQS---LSREMEAIRTDNQNFASQLRE-------AEARNRDLEAHVRQLQERMELLQ 72 (81)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 444454444443332 334556677777777766654 45667777777777777777765
No 106
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=71.27 E-value=5.3 Score=33.72 Aligned_cols=39 Identities=18% Similarity=0.298 Sum_probs=20.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 042014 108 QLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTDLQL 146 (169)
Q Consensus 108 ~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l~~ 146 (169)
.|..++..+..+...|..+-..++.++..|+..|..|+.
T Consensus 58 eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 58 QLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 344444444444444555555555566666666665553
No 107
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=71.21 E-value=18 Score=23.47 Aligned_cols=44 Identities=16% Similarity=0.087 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 91 HLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQML 141 (169)
Q Consensus 91 ~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L 141 (169)
.++.|..+|..|......|...+..+.. +-..-++|....-.+|
T Consensus 5 ki~~Lss~V~~L~~kVdqLssdV~al~~-------~v~~ak~eA~RAN~Rl 48 (52)
T 1jcd_A 5 KADQASSDAQTANAKADQASNDANAARS-------DAQAAKDDAARANQRA 48 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhh
Confidence 4556666666666666555555555443 3334445555555544
No 108
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=71.15 E-value=34 Score=28.17 Aligned_cols=40 Identities=23% Similarity=0.258 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 102 LRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQML 141 (169)
Q Consensus 102 L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L 141 (169)
--.||..|..+|..+.+.+..+..||..|+.-+..++...
T Consensus 113 aLeEN~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~~q~la 152 (209)
T 2wvr_A 113 ALKENEKLHKEIEQKDNEIARLKKENKELAEVAEHVQYMA 152 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3468999999999999999999999999988666555443
No 109
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=71.01 E-value=26 Score=25.05 Aligned_cols=49 Identities=8% Similarity=0.014 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 042014 90 KHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELR 138 (169)
Q Consensus 90 ~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr 138 (169)
...+.++.++..+...+..+-.++..|..++..+..+=..+...+....
T Consensus 23 drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~ 71 (101)
T 3u1c_A 23 DRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSE 71 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555554444444444333333333333
No 110
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=70.49 E-value=55 Score=28.66 Aligned_cols=35 Identities=14% Similarity=0.080 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 107 HQLVDKLNHVSGCHDKVIQENAELKVEATELRQML 141 (169)
Q Consensus 107 ~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L 141 (169)
..+..+++...+.+..+..|...|+.++.+.++++
T Consensus 526 ~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~ 560 (597)
T 3oja_B 526 QARRTEADAKQKETEDLEQENIALEKQLDNKRAKQ 560 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHH
Confidence 33333333333333433444444444333333333
No 111
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=69.72 E-value=27 Score=24.77 Aligned_cols=25 Identities=24% Similarity=0.222 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 91 HLDELWSQVVWLRNENHQLVDKLNH 115 (169)
Q Consensus 91 ~leeLe~qV~~L~~eN~~L~~~l~~ 115 (169)
.+++|+.+-..|+.+...|..++..
T Consensus 44 r~~~Le~EN~~Lr~~v~~L~~E~~~ 68 (87)
T 1hjb_A 44 KVLELTAENERLQKKVEQLSRELST 68 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444555554444444433
No 112
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=69.59 E-value=26 Score=24.58 Aligned_cols=59 Identities=15% Similarity=0.166 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 042014 88 KQKHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTDLQL 146 (169)
Q Consensus 88 Kq~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l~~ 146 (169)
=++.++.-..++..|+.-...|..-=..+..-+..+..|-..|...+..|+.+..+|..
T Consensus 16 l~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~~ 74 (78)
T 3iv1_A 16 MKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEELSS 74 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667777777777777777777776677777778888888888889999988888764
No 113
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=69.49 E-value=2.7 Score=31.53 Aligned_cols=26 Identities=31% Similarity=0.406 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 90 KHLDELWSQVVWLRNENHQLVDKLNH 115 (169)
Q Consensus 90 ~~leeLe~qV~~L~~eN~~L~~~l~~ 115 (169)
.-+++|.+++..|+-||..|++++..
T Consensus 8 ~t~EeLaaeL~kLqmENK~LKkkl~~ 33 (110)
T 2oa5_A 8 KTYEEMVKEVERLKLENKTLKQKVKS 33 (110)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45899999999999999999999974
No 114
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=69.00 E-value=17 Score=29.87 Aligned_cols=44 Identities=27% Similarity=0.263 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 94 ELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQML 141 (169)
Q Consensus 94 eLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L 141 (169)
=.+.|+..|+.+|..|..++..|.+ ...+|..+-.++..+...|
T Consensus 69 L~erQ~~~LR~r~~~Le~~L~~Li~----~A~~Ne~l~~~~~~l~l~L 112 (252)
T 3e98_A 69 LVERQVRLLRERNIEMRHRLSQLMD----VARENDRLFDKTRRLVLDL 112 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 3445666666666666666665543 4556666665555544443
No 115
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=68.63 E-value=8.6 Score=23.23 Aligned_cols=29 Identities=10% Similarity=0.209 Sum_probs=20.4
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 114 NHVSGCHDKVIQENAELKVEATELRQMLT 142 (169)
Q Consensus 114 ~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~ 142 (169)
++|..+...|..+|..|..++..|+..|.
T Consensus 4 nQLEdkVEeLl~~~~~Le~eV~RL~~ll~ 32 (34)
T 2hy6_A 4 KQLADAVEELASANYHLANAVARLAKAVG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 34444555677788888888888887664
No 116
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=67.50 E-value=9.6 Score=26.24 Aligned_cols=67 Identities=19% Similarity=0.128 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042014 78 RESARRSRMRKQKHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTDLQ 145 (169)
Q Consensus 78 RESARRSR~RKq~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l~ 145 (169)
-.+-|+-|.+=...+.+|..-|-.... ...=..-|....+.+..|..++..|.++...|+..+...+
T Consensus 11 ~~~ErrRR~~in~~f~~L~~lvP~~~~-k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~~~~~ 77 (82)
T 1am9_A 11 NAIEKRYRSSINDKIIELKDLVVGTEA-KLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRTAVHKSK 77 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCSSC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHhccCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 344444444445666677666553200 0000111233334455566677777777777777666543
No 117
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=66.95 E-value=16 Score=25.34 Aligned_cols=28 Identities=18% Similarity=0.165 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 88 KQKHLDELWSQVVWLRNENHQLVDKLNH 115 (169)
Q Consensus 88 Kq~~leeLe~qV~~L~~eN~~L~~~l~~ 115 (169)
|...+++|+.++.+...+...|+.++..
T Consensus 38 kd~~I~eLEk~L~ekd~eI~~LqseLDK 65 (72)
T 3nmd_A 38 RDALIDELELELDQKDELIQMLQNELDK 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556777777777777666666666543
No 118
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=66.64 E-value=32 Score=24.48 Aligned_cols=38 Identities=18% Similarity=0.233 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 042014 102 LRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQ 139 (169)
Q Consensus 102 L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~ 139 (169)
--.||..|...+..+.+.+..+..||..|++-+...+.
T Consensus 36 aL~EN~~Lh~~ie~~~eEi~~Lk~en~~L~elA~~~q~ 73 (83)
T 1wlq_A 36 ALKENEKLHKEIEQKDSEIARLRKENKDLAEVAEHVQY 73 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34578888888888888888888899888875555443
No 119
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=66.61 E-value=9 Score=26.15 Aligned_cols=12 Identities=25% Similarity=0.274 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHH
Q 042014 124 IQENAELKVEAT 135 (169)
Q Consensus 124 ~~EN~~Lr~e~~ 135 (169)
..+|..|+.++.
T Consensus 67 ~~~~~~L~~~l~ 78 (83)
T 1nkp_B 67 KRQNALLEQQVR 78 (83)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 334444444443
No 120
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=66.13 E-value=6.8 Score=25.48 Aligned_cols=29 Identities=14% Similarity=0.217 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042014 90 KHLDELWSQVVWLRNENHQLVDKLNHVSG 118 (169)
Q Consensus 90 ~~leeLe~qV~~L~~eN~~L~~~l~~l~~ 118 (169)
+.|+.+...+..|..+|..|..++..+.+
T Consensus 27 ~FLd~v~~~~~~l~~e~~~L~~~~~~l~~ 55 (57)
T 2wuj_A 27 EFLAQVRKDYEIVLRKKTELEAKVNELDE 55 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46777788888888888888888776654
No 121
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=66.08 E-value=64 Score=27.74 Aligned_cols=56 Identities=13% Similarity=0.025 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 042014 91 HLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTDLQL 146 (169)
Q Consensus 91 ~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l~~ 146 (169)
...+++.+....+.+-...+.+++.+.+..+.+..+...+..++.+.++.|.++..
T Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (487)
T 3oja_A 422 MYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELVV 477 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHH
Confidence 44455555556666677777777777777778888888888888888888777654
No 122
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=65.50 E-value=38 Score=24.91 Aligned_cols=44 Identities=16% Similarity=0.190 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 042014 90 KHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVE 133 (169)
Q Consensus 90 ~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e 133 (169)
+..-..+.+|..|+.++.+|+..+.........+..+|..|...
T Consensus 11 ~~~~~~e~e~~~l~~~~~el~~~l~~~~~~~~e~g~~~~~lq~~ 54 (125)
T 1joc_A 11 ERCLKGEGEIEKLQTKVLELQRKLDNTTAAVQELGRENQSLQIK 54 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc
Confidence 34445566788888888888888887776666677777776543
No 123
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=65.42 E-value=48 Score=26.78 Aligned_cols=24 Identities=13% Similarity=-0.029 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 92 LDELWSQVVWLRNENHQLVDKLNH 115 (169)
Q Consensus 92 leeLe~qV~~L~~eN~~L~~~l~~ 115 (169)
+.+|+.++..+...-..+..++..
T Consensus 34 l~~le~~~~~l~~~~~~~~~~l~d 57 (256)
T 3na7_A 34 LDKALNDKEAKNKAILNLEEEKLA 57 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 124
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=65.10 E-value=11 Score=22.76 Aligned_cols=18 Identities=22% Similarity=0.195 Sum_probs=9.4
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 042014 118 GCHDKVIQENAELKVEAT 135 (169)
Q Consensus 118 ~~~~~l~~EN~~Lr~e~~ 135 (169)
+.++.+..+|..|.+++.
T Consensus 14 qDIddlkrQN~~Le~Qir 31 (34)
T 1a93_B 14 QDIDDLKRQNALLEQQVR 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 333444556666666554
No 125
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=65.07 E-value=34 Score=24.21 Aligned_cols=48 Identities=8% Similarity=-0.004 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 042014 90 KHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATEL 137 (169)
Q Consensus 90 ~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~L 137 (169)
...+.++.++..+...+..+-.++..|..++..+..+=......+...
T Consensus 23 d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a 70 (101)
T 3u59_A 23 DRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEA 70 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555555555444444433333333333
No 126
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=64.95 E-value=33 Score=24.04 Aligned_cols=52 Identities=19% Similarity=0.185 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 042014 90 KHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTDLQLNS 148 (169)
Q Consensus 90 ~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l~~~~ 148 (169)
..+..|+.++++-+.+-..++.++..+.+.++.-.. ++.+||+-|+.+-..+
T Consensus 27 ~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~-------eL~elRqgLakL~~~~ 78 (79)
T 3cvf_A 27 HQLRAMERSLEEARAERERARAEVGRAAQLLDVSLF-------ELSELREGLARLAEAA 78 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH-------HHHHHHHHHHHhcccC
Confidence 445566666666666666666666666666655555 3555566665554443
No 127
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=64.80 E-value=7.8 Score=27.34 Aligned_cols=20 Identities=30% Similarity=0.285 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 042014 91 HLDELWSQVVWLRNENHQLV 110 (169)
Q Consensus 91 ~leeLe~qV~~L~~eN~~L~ 110 (169)
++.+|+.++.+|+.||.-|+
T Consensus 23 ~I~EL~e~~~qLE~EN~~Lk 42 (78)
T 1dip_A 23 QIRELVEKNSQLERENTLLK 42 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555554444
No 128
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=64.72 E-value=31 Score=23.66 Aligned_cols=51 Identities=14% Similarity=0.191 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 85 RMRKQKHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLT 142 (169)
Q Consensus 85 R~RKq~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~ 142 (169)
|...+..+..|+.++.++ +..+......+..|..=--.|..|++..|..|.
T Consensus 7 ~~~~~~~i~~lE~eL~~~-------r~e~~~ql~EYq~LlniKl~Le~EIatYRkLLE 57 (74)
T 2xv5_A 7 RDTSRRLLAEKEREMAEM-------RARMQQQLDEYQELLDIKLALDMEIHAYRKLLE 57 (74)
T ss_dssp HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444455555555554 444444445556666666677788888887774
No 129
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=64.64 E-value=25 Score=22.52 Aligned_cols=22 Identities=18% Similarity=0.321 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 042014 123 VIQENAELKVEATELRQMLTDL 144 (169)
Q Consensus 123 l~~EN~~Lr~e~~~Lr~~L~~l 144 (169)
++..-.-|..-++.||..|..+
T Consensus 22 lerdeqnlekiianlrdeiarl 43 (52)
T 3he5_B 22 LERDEQNLEKIIANLRDEIARL 43 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHhhHHHHHHHHHHHHHHH
Confidence 3333333444444444444433
No 130
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=64.13 E-value=42 Score=24.99 Aligned_cols=48 Identities=19% Similarity=0.202 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 042014 85 RMRKQKHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQ 139 (169)
Q Consensus 85 R~RKq~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~ 139 (169)
...-+.++..|..+|..|..+...-+.. .+....||..|+.++..++.
T Consensus 35 ~~E~q~~v~ql~~~i~~Le~eL~e~r~~-------~q~a~~e~e~Lr~e~~~l~~ 82 (120)
T 3i00_A 35 KTESQRVVLQLKGHVSELEADLAEQQHL-------RQQAADDCEFLRAELDELRR 82 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 4456677888888888888776655433 34456778888888877643
No 131
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=64.13 E-value=16 Score=29.73 Aligned_cols=24 Identities=38% Similarity=0.354 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 91 HLDELWSQVVWLRNENHQLVDKLN 114 (169)
Q Consensus 91 ~leeLe~qV~~L~~eN~~L~~~l~ 114 (169)
+++.-..-|..|..||..|..++.
T Consensus 14 ql~~ad~LV~~L~~En~~L~~ql~ 37 (190)
T 4emc_A 14 QIDSADLLVANLVNENFVLSEKLD 37 (190)
T ss_dssp ------CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334445555555554444444
No 132
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=63.62 E-value=35 Score=26.69 Aligned_cols=30 Identities=20% Similarity=0.135 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 042014 118 GCHDKVIQENAELKVEATELRQMLTDLQLN 147 (169)
Q Consensus 118 ~~~~~l~~EN~~Lr~e~~~Lr~~L~~l~~~ 147 (169)
...+.+...|..|+.++.+-...|..++.+
T Consensus 108 ~~~~~~e~r~~~L~~ql~e~~~~l~~lq~q 137 (154)
T 2ocy_A 108 KEKYAIEILNKRLTEQLREKDTLLDTLTLQ 137 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777888888888888888777654
No 133
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=63.23 E-value=14 Score=22.15 Aligned_cols=27 Identities=4% Similarity=-0.025 Sum_probs=17.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 115 HVSGCHDKVIQENAELKVEATELRQML 141 (169)
Q Consensus 115 ~l~~~~~~l~~EN~~Lr~e~~~Lr~~L 141 (169)
+|..+...+..+|..|..++..|+..|
T Consensus 4 QLEdKVEell~~~~~le~EV~Rl~~ll 30 (33)
T 2wq1_A 4 QLEDKIEENTSKIYHNTNEIARNTKLV 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 344455556677777777777777665
No 134
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=63.19 E-value=20 Score=25.00 Aligned_cols=15 Identities=20% Similarity=0.315 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHH
Q 042014 123 VIQENAELKVEATEL 137 (169)
Q Consensus 123 l~~EN~~Lr~e~~~L 137 (169)
+..+|..|+.++..|
T Consensus 71 L~~~n~~L~~rl~~L 85 (88)
T 1nkp_A 71 LRKRREQLKHKLEQL 85 (88)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 444555555555444
No 135
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=62.16 E-value=46 Score=24.69 Aligned_cols=47 Identities=21% Similarity=0.150 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 042014 89 QKHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEAT 135 (169)
Q Consensus 89 q~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~ 135 (169)
+.++-+||..-..|..........+..+...++.+...|+-|-.++.
T Consensus 55 ~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n~aiErnalLE~El~ 101 (111)
T 2v66_B 55 HKYVRELEQANDDLERAKRATIVSLEDFEQRLNQAIERNAFLESELD 101 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444445555555555544443
No 136
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=61.91 E-value=45 Score=24.54 Aligned_cols=51 Identities=18% Similarity=0.153 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 93 DELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTD 143 (169)
Q Consensus 93 eeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~ 143 (169)
.+.+.....|......|-.++..+..++......|..|-+....|...+..
T Consensus 65 ~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~ 115 (129)
T 2fxo_A 65 ADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSE 115 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555555555555555555444444444444333
No 137
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=61.89 E-value=38 Score=29.83 Aligned_cols=46 Identities=17% Similarity=0.030 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 042014 90 KHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEAT 135 (169)
Q Consensus 90 ~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~ 135 (169)
..+.+|..++..|..++.++..++..+.+++.....+-..|.-++.
T Consensus 10 ~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~ 55 (412)
T 3u06_A 10 TEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVM 55 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666666666666666666555554444433333333333
No 138
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=61.32 E-value=36 Score=23.25 Aligned_cols=50 Identities=16% Similarity=0.158 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHhHHHHHHHH-------H-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 66 INERKQRRMISNRESARRSR-------M-------RKQKHLDELWSQVVWLRNENHQLVDKLNH 115 (169)
Q Consensus 66 ~deRR~RR~isNRESARRSR-------~-------RKq~~leeLe~qV~~L~~eN~~L~~~l~~ 115 (169)
.-||+.|-.|..+-.+=++= + +--.|+..|+.++..|..++..|...++.
T Consensus 12 ~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~~~ 75 (82)
T 1am9_A 12 AIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRTAVHK 75 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666666676665553332 1 22367777777777777777777666543
No 139
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=61.17 E-value=23 Score=21.60 Aligned_cols=29 Identities=14% Similarity=0.155 Sum_probs=18.3
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 115 HVSGCHDKVIQENAELKVEATELRQMLTD 143 (169)
Q Consensus 115 ~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~ 143 (169)
+|..+...+..+|..|..++..|+..|..
T Consensus 5 QLE~kVEeLl~~~~~Le~EV~RL~~ll~~ 33 (36)
T 1kd8_A 5 QLEAEVEEIESEVWHLENEVARLEKENAE 33 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhcc
Confidence 33444455666777777777777776654
No 140
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=61.01 E-value=4.7 Score=33.27 Aligned_cols=7 Identities=29% Similarity=0.221 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 042014 124 IQENAEL 130 (169)
Q Consensus 124 ~~EN~~L 130 (169)
..||..|
T Consensus 32 k~e~~~l 38 (255)
T 2j5u_A 32 KERLEEL 38 (255)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 141
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=60.90 E-value=88 Score=34.81 Aligned_cols=20 Identities=5% Similarity=0.194 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 042014 122 KVIQENAELKVEATELRQML 141 (169)
Q Consensus 122 ~l~~EN~~Lr~e~~~Lr~~L 141 (169)
.|..|+.+..+.+..+...+
T Consensus 2081 gL~~Ek~RW~~~~~~l~~~~ 2100 (3245)
T 3vkg_A 2081 NLNSERGRWEQQSENFNTQM 2100 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhccccHHHHHHHHHHHH
Confidence 34455555555555554443
No 142
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=60.79 E-value=34 Score=22.73 Aligned_cols=9 Identities=11% Similarity=-0.020 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q 042014 93 DELWSQVVW 101 (169)
Q Consensus 93 eeLe~qV~~ 101 (169)
++|...|..
T Consensus 38 eel~~~~~~ 46 (77)
T 3trt_A 38 ADLSEAANR 46 (77)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 344444333
No 143
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=60.53 E-value=29 Score=24.21 Aligned_cols=33 Identities=24% Similarity=0.338 Sum_probs=19.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042014 113 LNHVSGCHDKVIQENAELKVEATELRQMLTDLQ 145 (169)
Q Consensus 113 l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l~ 145 (169)
|..|......+..+...|+.+...|+.+|..|+
T Consensus 54 I~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L~ 86 (88)
T 1nkp_A 54 ILSVQAEEQKLISEEDLLRKRREQLKHKLEQLG 86 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333444444555555666667777777766654
No 144
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=60.31 E-value=14 Score=25.45 Aligned_cols=23 Identities=17% Similarity=0.058 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 042014 90 KHLDELWSQVVWLRNENHQLVDK 112 (169)
Q Consensus 90 ~~leeLe~qV~~L~~eN~~L~~~ 112 (169)
.|+..|+.+...|..+...|+.+
T Consensus 47 ~yI~~L~~~~~~l~~e~~~L~~e 69 (80)
T 1nlw_A 47 LHIKKLEDSDRKAVHQIDQLQRE 69 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444333
No 145
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=60.20 E-value=15 Score=29.60 Aligned_cols=19 Identities=16% Similarity=0.247 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 042014 123 VIQENAELKVEATELRQML 141 (169)
Q Consensus 123 l~~EN~~Lr~e~~~Lr~~L 141 (169)
+..||.+|+.+..+...++
T Consensus 164 LqkeNeRL~~E~n~~l~ql 182 (184)
T 3w03_C 164 LQKENERLLRDWNDVQGRF 182 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3345555555554444443
No 146
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=59.95 E-value=43 Score=23.71 Aligned_cols=37 Identities=11% Similarity=0.068 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 042014 87 RKQKHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKV 123 (169)
Q Consensus 87 RKq~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l 123 (169)
+=+.-.-.++.++...+..|..|..++..+..+...+
T Consensus 35 ~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eel 71 (81)
T 1wt6_A 35 AIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555667788888888888887777766655543
No 147
>3bbp_D GRIP and coiled-coil domain-containing protein 2; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens}
Probab=59.14 E-value=11 Score=26.24 Aligned_cols=19 Identities=21% Similarity=0.233 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 042014 119 CHDKVIQENAELKVEATEL 137 (169)
Q Consensus 119 ~~~~l~~EN~~Lr~e~~~L 137 (169)
....|..+|..||.|+..|
T Consensus 44 tnarL~eq~~lLK~EIRRl 62 (71)
T 3bbp_D 44 TNAILMEQIKLLKSEIRRL 62 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 3444555566666555544
No 148
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=58.89 E-value=33 Score=27.85 Aligned_cols=26 Identities=8% Similarity=0.106 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042014 93 DELWSQVVWLRNENHQLVDKLNHVSG 118 (169)
Q Consensus 93 eeLe~qV~~L~~eN~~L~~~l~~l~~ 118 (169)
..|..++..|..++.....++..|.+
T Consensus 23 ~~L~~En~~L~~ql~~k~~ei~~L~~ 48 (190)
T 4emc_A 23 ANLVNENFVLSEKLDTKATEIKQLQK 48 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444333333333333333
No 149
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=58.60 E-value=27 Score=22.92 Aligned_cols=30 Identities=23% Similarity=0.259 Sum_probs=17.3
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042014 115 HVSGCHDKVIQENAELKVEATELRQMLTDL 144 (169)
Q Consensus 115 ~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l 144 (169)
+|.++...+..||.-||.|+..=-..|..+
T Consensus 7 QL~~QVe~Lk~ENshLrrEL~dNS~~lskL 36 (54)
T 1deb_A 7 QLLKQVEALKMENSNLRQELEDNSNHLTKL 36 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHhhHHHHHHH
Confidence 344455556667777776666555555444
No 150
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=58.57 E-value=5.3 Score=33.09 Aligned_cols=81 Identities=15% Similarity=0.174 Sum_probs=38.5
Q ss_pred cHHHHHHHHHHHh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 042014 65 IINERKQRRMISN-------RESARRSRMRKQKHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATEL 137 (169)
Q Consensus 65 ~~deRR~RR~isN-------RESARRSR~RKq~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~L 137 (169)
.++.+|-+|.+|- ||+..--=....++.+++..++.+|..+|..+..+|+.+.....+..++=.-.+..+..|
T Consensus 116 kP~~~Rt~~iLSalINF~~FRE~~~~~~~e~~~~~e~~~~~i~ql~~En~~le~~Ie~Lk~e~~e~~te~~p~~k~~~ql 195 (250)
T 2ve7_C 116 CPKAKRTSRFLSGIINFIHFREACRETYMEFLWQYKSSADKMQQLNAAHQEALMKLERLEKEVDEDTTVTIPSAVYVAQL 195 (250)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHSCC-------------CTTTHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHH
Confidence 6788899998764 333333333344455555566666666666666666665555444333322223445555
Q ss_pred HHHHHHhh
Q 042014 138 RQMLTDLQ 145 (169)
Q Consensus 138 r~~L~~l~ 145 (169)
...+..++
T Consensus 196 y~~vt~i~ 203 (250)
T 2ve7_C 196 YHQVSKIE 203 (250)
T ss_dssp HHHHHCCE
T ss_pred HHHHhhce
Confidence 55555444
No 151
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=58.33 E-value=38 Score=27.19 Aligned_cols=25 Identities=28% Similarity=0.356 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 92 LDELWSQVVWLRNENHQLVDKLNHV 116 (169)
Q Consensus 92 leeLe~qV~~L~~eN~~L~~~l~~l 116 (169)
+.+|..++.+|+.+|..|+.+.+.+
T Consensus 154 ~~~L~~~n~~LqkeNeRL~~E~n~~ 178 (184)
T 3w03_C 154 IAENQAKNEHLQKENERLLRDWNDV 178 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444433
No 152
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=58.32 E-value=35 Score=22.12 Aligned_cols=37 Identities=5% Similarity=-0.006 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 042014 91 HLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAEL 130 (169)
Q Consensus 91 ~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~L 130 (169)
.++.|..+|.+|..+...|+..+....+ ....-|.+|
T Consensus 12 ~V~~L~~kVdqLssdV~al~~~v~~ak~---eA~RAN~Rl 48 (52)
T 1jcd_A 12 DAQTANAKADQASNDANAARSDAQAAKD---DAARANQRA 48 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhh
Confidence 4667777888888877777777665443 333445554
No 153
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=58.17 E-value=17 Score=26.16 Aligned_cols=33 Identities=21% Similarity=0.190 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 042014 91 HLDELWSQVVWLRNENHQLVDKLNHVSGCHDKV 123 (169)
Q Consensus 91 ~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l 123 (169)
....|..++..|..|+..+..++..+.+.+..|
T Consensus 56 e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~~L 88 (90)
T 2wt7_B 56 EKTQLIQQVEQLKQEVSRLARERDAYKVKSEKL 88 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445667777777777777777777776666543
No 154
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=57.83 E-value=20 Score=21.65 Aligned_cols=29 Identities=14% Similarity=0.131 Sum_probs=19.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 114 NHVSGCHDKVIQENAELKVEATELRQMLT 142 (169)
Q Consensus 114 ~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~ 142 (169)
++|..+...|..+|..|..|+..|+..|.
T Consensus 4 nQledKvEel~~~~~~l~nEv~Rl~~lLg 32 (34)
T 2r2v_A 4 KQVADKLEEVASKLYHNANELARVAKLLG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 44445555667778888888888877664
No 155
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=57.33 E-value=59 Score=24.44 Aligned_cols=33 Identities=21% Similarity=0.178 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 042014 91 HLDELWSQVVWLRNENHQLVDKLNHVSGCHDKV 123 (169)
Q Consensus 91 ~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l 123 (169)
..++|+.++..|...|..|..++..+..++..+
T Consensus 51 ~~~eL~~~~~~Le~~n~~L~~~lke~~~~~~~l 83 (155)
T 2oto_A 51 RAEELEKAKQALEDQRKDLETKLKELQQDYDLA 83 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788888888888888888888887766444
No 156
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=56.91 E-value=46 Score=23.12 Aligned_cols=54 Identities=19% Similarity=0.307 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 89 QKHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLT 142 (169)
Q Consensus 89 q~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~ 142 (169)
.....+|+.+...|..+...|..++..+.+.+..+......|...+.+|..+|.
T Consensus 34 e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~~rl~ 87 (89)
T 3bas_A 34 ERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLKKLVG 87 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344567788888888888888887888888899999999999999998888774
No 157
>2lz1_A Nuclear factor erythroid 2-related factor 2; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=56.89 E-value=0.15 Score=37.17 Aligned_cols=22 Identities=36% Similarity=0.357 Sum_probs=19.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHH
Q 042014 68 ERKQRRMISNRESARRSRMRKQ 89 (169)
Q Consensus 68 eRR~RR~isNRESARRSR~RKq 89 (169)
-|..||.-+||.+|+++|+||.
T Consensus 65 IrdiRRRgKNkvAAqnCRKRKl 86 (90)
T 2lz1_A 65 IRDIRRRGKNKVAAQNCRKRKL 86 (90)
T ss_dssp HHHHHHHSCSCCCCCCCSCCCC
T ss_pred HHHHHHhhhhHHHHHHcchhhc
Confidence 4578889999999999999874
No 158
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=55.66 E-value=19 Score=21.98 Aligned_cols=19 Identities=21% Similarity=-0.025 Sum_probs=13.0
Q ss_pred HhHHHHHHHHHHHHHHHHH
Q 042014 117 SGCHDKVIQENAELKVEAT 135 (169)
Q Consensus 117 ~~~~~~l~~EN~~Lr~e~~ 135 (169)
..+...++.+|..|..++.
T Consensus 19 idkVR~LE~~N~~Le~~i~ 37 (39)
T 1gk7_A 19 IDKVRFLEQQNKILLAELE 37 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455667888888877654
No 159
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=55.61 E-value=49 Score=23.01 Aligned_cols=48 Identities=15% Similarity=0.169 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 93 DELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTD 143 (169)
Q Consensus 93 eeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~ 143 (169)
++||.+|..|..--..|+.++..|...+. .-...||..+..|-..+..
T Consensus 3 ~dlEEKv~~LE~sld~LQTrfARLLaEy~---ssQ~KLKqRit~LE~~~~~ 50 (74)
T 3swf_A 3 MGLEEKVTRMESSVDLLQTRFARILAEYE---SMQQKLKQRLTKVEKFLKP 50 (74)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhcc
Confidence 45777787777766666666655543332 2345677777777776665
No 160
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=55.60 E-value=57 Score=23.79 Aligned_cols=38 Identities=13% Similarity=0.129 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 042014 102 LRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQ 139 (169)
Q Consensus 102 L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~ 139 (169)
++.+...|++.+..+.-....|+.+=..|++++.-|+.
T Consensus 67 ~E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl~FLKk 104 (119)
T 3ol1_A 67 AENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKK 104 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555544443444445555556666655553
No 161
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=55.48 E-value=37 Score=21.50 Aligned_cols=18 Identities=28% Similarity=0.274 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 042014 99 VVWLRNENHQLVDKLNHV 116 (169)
Q Consensus 99 V~~L~~eN~~L~~~l~~l 116 (169)
|.+|+.|...|..+.+-+
T Consensus 5 vaqlenevaslenenetl 22 (49)
T 3he5_A 5 VAQLENEVASLENENETL 22 (49)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccHHH
Confidence 445555554444444433
No 162
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=54.69 E-value=18 Score=29.79 Aligned_cols=38 Identities=5% Similarity=0.066 Sum_probs=17.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042014 108 QLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTDLQ 145 (169)
Q Consensus 108 ~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l~ 145 (169)
++..+.+.+..+..++..||..+++++.+|++.+.+.+
T Consensus 145 e~~~~~e~~~~~i~ql~~En~~le~~Ie~Lk~e~~e~~ 182 (250)
T 2ve7_C 145 EFLWQYKSSADKMQQLNAAHQEALMKLERLEKEVDEDT 182 (250)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHHSCC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 33444444555556667778888888888777766544
No 163
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=54.58 E-value=59 Score=26.79 Aligned_cols=50 Identities=14% Similarity=0.223 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 042014 67 NERKQRRMISNRESARRSRMRKQKHLDELWSQVVWLRNENHQLVDKLNHVSGCHDK 122 (169)
Q Consensus 67 deRR~RR~isNRESARRSR~RKq~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~ 122 (169)
++...|+-+..|-.+=+ +.+..|+.++.+.+.|+..+...+....++.+.
T Consensus 161 sde~Ik~yLa~R~~~lK------~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~ 210 (228)
T 3q0x_A 161 NDSVVKQFLAFRLSEVK------GTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQ 210 (228)
T ss_dssp CHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456666665554332 345666677777776666666666554444333
No 164
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=54.53 E-value=55 Score=23.22 Aligned_cols=49 Identities=10% Similarity=0.068 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 93 DELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQML 141 (169)
Q Consensus 93 eeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L 141 (169)
..++.+...|..+-.....+.+....+...+..|-..|..++......|
T Consensus 42 ~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~~~~qL 90 (96)
T 3q8t_A 42 EKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMRYAQMQL 90 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333334444444444444433333
No 165
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=54.26 E-value=21 Score=24.76 Aligned_cols=27 Identities=15% Similarity=0.030 Sum_probs=14.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 042014 112 KLNHVSGCHDKVIQENAELKVEATELR 138 (169)
Q Consensus 112 ~l~~l~~~~~~l~~EN~~Lr~e~~~Lr 138 (169)
.|..+...+.....+...|+.++.+++
T Consensus 41 ~I~eLEk~L~ekd~eI~~LqseLDKfr 67 (72)
T 3nmd_A 41 LIDELELELDQKDELIQMLQNELDKYR 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444444555555555655555543
No 166
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=54.12 E-value=13 Score=23.74 Aligned_cols=24 Identities=29% Similarity=0.237 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 90 KHLDELWSQVVWLRNENHQLVDKL 113 (169)
Q Consensus 90 ~~leeLe~qV~~L~~eN~~L~~~l 113 (169)
.+++.|+.+|..|+.....|...+
T Consensus 44 ~~~~~L~~ri~~Le~~l~~l~~~l 67 (70)
T 1zme_C 44 KYLQQLQKDLNDKTEENNRLKALL 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888888888887777666544
No 167
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=53.05 E-value=26 Score=25.79 Aligned_cols=30 Identities=7% Similarity=0.142 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 042014 91 HLDELWSQVVWLRNENHQLVDKLNHVSGCH 120 (169)
Q Consensus 91 ~leeLe~qV~~L~~eN~~L~~~l~~l~~~~ 120 (169)
.+..|+.++..++..+..|...+..+..++
T Consensus 44 ~iq~L~~el~~l~~~~~~LE~~l~e~e~~~ 73 (129)
T 3tnu_B 44 MIQRLRAEIDNVKKQCANLQNAIADAEQRG 73 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 455666666666666666666666665543
No 168
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=52.38 E-value=46 Score=21.67 Aligned_cols=34 Identities=18% Similarity=0.242 Sum_probs=24.4
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042014 112 KLNHVSGCHDKVIQENAELKVEATELRQMLTDLQ 145 (169)
Q Consensus 112 ~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l~ 145 (169)
.+..|......|..+|..|+.++..|+..+..|.
T Consensus 24 ~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk 57 (63)
T 2wt7_A 24 LTDTLQAETDQLEDEKSALQTEIANLLKEKEKLE 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566667777888888888888887776654
No 169
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=50.94 E-value=91 Score=24.69 Aligned_cols=35 Identities=11% Similarity=0.157 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 042014 94 ELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENA 128 (169)
Q Consensus 94 eLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~ 128 (169)
++...+..+...+..|...+..+......|..|..
T Consensus 38 El~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~ 72 (168)
T 3o0z_A 38 EMSKSISQLESLNRELQERNRILENSKSQTDKDYY 72 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444333433333
No 170
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=50.82 E-value=28 Score=20.41 Aligned_cols=24 Identities=21% Similarity=0.231 Sum_probs=16.7
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHH
Q 042014 116 VSGCHDKVIQENAELKVEATELRQ 139 (169)
Q Consensus 116 l~~~~~~l~~EN~~Lr~e~~~Lr~ 139 (169)
+.....+.++||-+|..+++.|..
T Consensus 6 lekevaqaeaenyqleqevaqleh 29 (33)
T 1fmh_A 6 LEKEVAQAEAENYQLEQEVAQLEH 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHH
Confidence 334445677888888888877754
No 171
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=50.34 E-value=56 Score=22.07 Aligned_cols=39 Identities=21% Similarity=0.274 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 042014 108 QLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTDLQL 146 (169)
Q Consensus 108 ~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l~~ 146 (169)
++++.+..-..+.++|..=|..|-+|+..++..|..|+.
T Consensus 17 evK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQs 55 (63)
T 2w6a_A 17 ELKKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQA 55 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHh
Confidence 445555555566777888889999999888888888774
No 172
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=50.24 E-value=70 Score=24.49 Aligned_cols=25 Identities=20% Similarity=0.133 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 042014 121 DKVIQENAELKVEATELRQMLTDLQ 145 (169)
Q Consensus 121 ~~l~~EN~~Lr~e~~~Lr~~L~~l~ 145 (169)
+.+...|..|++++.+-...|..++
T Consensus 99 ~~~e~r~~~L~~ql~e~e~ll~~lq 123 (135)
T 2e7s_A 99 YAIEILNKRLTEQLREKDMLLDTLT 123 (135)
T ss_dssp HHHHHHHHHHHHTTTHHHHCC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444333
No 173
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=49.72 E-value=71 Score=26.32 Aligned_cols=24 Identities=21% Similarity=0.267 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 042014 95 LWSQVVWLRNENHQLVDKLNHVSG 118 (169)
Q Consensus 95 Le~qV~~L~~eN~~L~~~l~~l~~ 118 (169)
|..++..++.++..|..++..+..
T Consensus 169 La~R~~~lK~kl~~l~~~L~~~~~ 192 (228)
T 3q0x_A 169 LAFRLSEVKGTCHDLSDDLSRTRD 192 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444333
No 174
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=49.28 E-value=1.5e+02 Score=26.75 Aligned_cols=19 Identities=16% Similarity=0.086 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 042014 123 VIQENAELKVEATELRQML 141 (169)
Q Consensus 123 l~~EN~~Lr~e~~~Lr~~L 141 (169)
+.+|=..|++++..|...+
T Consensus 121 l~~~~~~l~~~i~~l~~~~ 139 (501)
T 1wle_A 121 LRARGREIRKQLTLLYPKE 139 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444443333
No 175
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=49.11 E-value=63 Score=22.32 Aligned_cols=54 Identities=11% Similarity=0.147 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 89 QKHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLT 142 (169)
Q Consensus 89 q~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~ 142 (169)
...+..+...+..|+.+-..++..+......+..|..=--.|..+++..|..|.
T Consensus 27 ~~~l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~EIatYRkLLE 80 (86)
T 1x8y_A 27 ARERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLLE 80 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHc
Confidence 445666667777777777777777777777777787777888888988888775
No 176
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=48.24 E-value=67 Score=22.37 Aligned_cols=20 Identities=20% Similarity=0.097 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 042014 119 CHDKVIQENAELKVEATELR 138 (169)
Q Consensus 119 ~~~~l~~EN~~Lr~e~~~Lr 138 (169)
.+-.+--||..|...+.+|.
T Consensus 54 EiislNIENNlL~~rl~~l~ 73 (75)
T 3a7o_A 54 ELISGTIENNVLQQKLSDLK 73 (75)
T ss_dssp HHHHHHHHHHHHHHHHC---
T ss_pred HHHHhHHHHHHHHHHHHHHh
Confidence 34445667777776666554
No 177
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=47.33 E-value=62 Score=22.81 Aligned_cols=27 Identities=22% Similarity=0.289 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 89 QKHLDELWSQVVWLRNENHQLVDKLNH 115 (169)
Q Consensus 89 q~~leeLe~qV~~L~~eN~~L~~~l~~ 115 (169)
..++.+|..+|..+..++..|..++..
T Consensus 55 e~~i~~Lr~~i~~~~~ek~~l~~e~dn 81 (93)
T 3s4r_A 55 EEEMRELRRQVDQLTNDKARVEVERDN 81 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666665555443
No 178
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=46.85 E-value=66 Score=26.73 Aligned_cols=31 Identities=35% Similarity=0.309 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHhHHHH-HHHHHHHHHHHHHHH
Q 042014 66 INERKQRRMISNRESA-RRSRMRKQKHLDELW 96 (169)
Q Consensus 66 ~deRR~RR~isNRESA-RRSR~RKq~~leeLe 96 (169)
.+-|-.=.-|+|||.. +.+|.||+.-.+++.
T Consensus 90 d~yR~~LK~IR~~E~svqp~R~~R~~l~~~I~ 121 (234)
T 3plt_A 90 DQYRVTLKSIRNIEASVQPSRDRKEKITDEIA 121 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3445555667888765 667777765555443
No 179
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=46.54 E-value=53 Score=20.77 Aligned_cols=24 Identities=17% Similarity=0.126 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 94 ELWSQVVWLRNENHQLVDKLNHVS 117 (169)
Q Consensus 94 eLe~qV~~L~~eN~~L~~~l~~l~ 117 (169)
++|.+|..|..--..|+.++..+.
T Consensus 2 dlEekv~~Le~~ld~LqTr~ArLl 25 (46)
T 3swy_A 2 ALEEKVEQLGSSLDTLQTRFARLL 25 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777777766555555555443
No 180
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=46.32 E-value=70 Score=22.03 Aligned_cols=30 Identities=27% Similarity=0.242 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 042014 95 LWSQVVWLRNENHQLVDKLNHVSGCHDKVI 124 (169)
Q Consensus 95 Le~qV~~L~~eN~~L~~~l~~l~~~~~~l~ 124 (169)
|...|..|..|+..|..++..+.+.+..+.
T Consensus 2 ~~k~v~~l~~E~eel~~klk~~~ee~~~~~ 31 (71)
T 1uix_A 2 STSDVANLANEKEELNNKLKEAQEQLSRLK 31 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677777777777777777776665554
No 181
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=46.16 E-value=72 Score=22.14 Aligned_cols=25 Identities=24% Similarity=0.270 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 93 DELWSQVVWLRNENHQLVDKLNHVS 117 (169)
Q Consensus 93 eeLe~qV~~L~~eN~~L~~~l~~l~ 117 (169)
.+|..|+..+..+|..|..++..+.
T Consensus 3 ~eLr~qi~~l~~e~~~l~~e~dn~~ 27 (86)
T 3swk_A 3 RELRRQVDQLTNDKARVEVERDNLA 27 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4555666666666665555555443
No 182
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=46.15 E-value=48 Score=22.30 Aligned_cols=51 Identities=14% Similarity=0.208 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 042014 89 QKHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQ 139 (169)
Q Consensus 89 q~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~ 139 (169)
...+++|..-|-.+...-..=..-|....+.+..|..++..|..++..|++
T Consensus 28 n~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~e~~~L~~ 78 (80)
T 1hlo_A 28 KDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKR 78 (80)
T ss_dssp HHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455667766665543111001111222334455677777777777777765
No 183
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=45.91 E-value=1.1e+02 Score=33.95 Aligned_cols=47 Identities=11% Similarity=0.125 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 97 SQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTD 143 (169)
Q Consensus 97 ~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~ 143 (169)
.++...+++-..|..++..++.+++....|-..|+.++.....+|..
T Consensus 2028 ~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~r 2074 (3245)
T 3vkg_A 2028 LKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDR 2074 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555566666666677777777777777777777766643
No 184
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=45.08 E-value=92 Score=23.10 Aligned_cols=21 Identities=19% Similarity=0.164 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 042014 126 ENAELKVEATELRQMLTDLQL 146 (169)
Q Consensus 126 EN~~Lr~e~~~Lr~~L~~l~~ 146 (169)
+....+.+...||..+..+..
T Consensus 62 ~~q~a~~e~e~Lr~e~~~l~~ 82 (120)
T 3i00_A 62 LRQQAADDCEFLRAELDELRR 82 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444556667766666543
No 185
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=44.33 E-value=74 Score=21.77 Aligned_cols=56 Identities=11% Similarity=0.168 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 87 RKQKHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLT 142 (169)
Q Consensus 87 RKq~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~ 142 (169)
|-...+..+...+..|+.+-..++..+......+..|..=--.|..+++..|..|.
T Consensus 23 ~~~~~~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~EIatYRkLLE 78 (84)
T 1gk4_A 23 NFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLE 78 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHc
Confidence 33445666777777777777777777777777777787777788888888887763
No 186
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=43.39 E-value=1e+02 Score=25.25 Aligned_cols=39 Identities=21% Similarity=0.285 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 042014 100 VWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELR 138 (169)
Q Consensus 100 ~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr 138 (169)
.+|+++-.....+.+.|+..+..+.+||..|+..+..|.
T Consensus 33 ~~~~a~~~s~~s~~~dl~~s~~~l~ae~~~L~~~l~kLe 71 (206)
T 3oa7_A 33 QQLRVNYGSFVSEYNDLTKSHNTLSKELDNLRSRFGNLE 71 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcc
Confidence 344555555555556666666666666666666666554
No 187
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=43.24 E-value=1e+02 Score=23.08 Aligned_cols=27 Identities=15% Similarity=0.265 Sum_probs=13.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 115 HVSGCHDKVIQENAELKVEATELRQML 141 (169)
Q Consensus 115 ~l~~~~~~l~~EN~~Lr~e~~~Lr~~L 141 (169)
.+......|...|..|+.++..++...
T Consensus 54 eL~~~~~~Le~~n~~L~~~lke~~~~~ 80 (155)
T 2oto_A 54 ELEKAKQALEDQRKDLETKLKELQQDY 80 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555555443
No 188
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=42.66 E-value=23 Score=26.48 Aligned_cols=17 Identities=18% Similarity=0.315 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 042014 124 IQENAELKVEATELRQM 140 (169)
Q Consensus 124 ~~EN~~Lr~e~~~Lr~~ 140 (169)
..|+..|+.++..|+..
T Consensus 38 ~~e~k~l~ke~~~l~~~ 54 (171)
T 2zvf_A 38 FEEWKDQRKEIERLKSV 54 (171)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 189
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=42.61 E-value=1.2e+02 Score=23.57 Aligned_cols=49 Identities=14% Similarity=0.287 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 042014 83 RSRMRKQKHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELK 131 (169)
Q Consensus 83 RSR~RKq~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr 131 (169)
|+=.+-+..++.|+..+..-+..+..+...+..+...+..+..-|-.|.
T Consensus 98 Rsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~~~~~~~~~ 146 (155)
T 2efr_A 98 RSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEELLSKNYHLE 146 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHH
Confidence 3333333344444444443333333344433333333333333333333
No 190
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=42.16 E-value=80 Score=21.54 Aligned_cols=45 Identities=11% Similarity=-0.016 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 98 QVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLT 142 (169)
Q Consensus 98 qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~ 142 (169)
+...++.....|..++..+.........|-..|-.-...|-..|+
T Consensus 6 e~~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~EIa 50 (74)
T 2xv5_A 6 ERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIH 50 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444555554444444454444444444444443
No 191
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=41.95 E-value=38 Score=28.66 Aligned_cols=32 Identities=13% Similarity=0.128 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 042014 96 WSQVVWLRNENHQLVDKLNHVSGCHDKVIQEN 127 (169)
Q Consensus 96 e~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN 127 (169)
+.+++.|+.+++.|..+++.+......+...|
T Consensus 184 ~~eie~L~~~~~~L~eEi~~Le~~~e~~~k~n 215 (315)
T 2ve7_A 184 AFKLESLEAKNRALNEQIARLEQERSTANKAN 215 (315)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 44666666666666666666655544444444
No 192
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=41.90 E-value=90 Score=22.06 Aligned_cols=29 Identities=31% Similarity=0.233 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042014 90 KHLDELWSQVVWLRNENHQLVDKLNHVSG 118 (169)
Q Consensus 90 ~~leeLe~qV~~L~~eN~~L~~~l~~l~~ 118 (169)
+.+.+|.-+|.+|..|--+.-.++.....
T Consensus 26 qEi~~Lr~kv~elEnErlQyEkKLKsTK~ 54 (81)
T 3qh9_A 26 QELRHLKIKVEELENERNQYEWKLKATKA 54 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 45566666666666665555555554443
No 193
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=41.90 E-value=12 Score=24.35 Aligned_cols=24 Identities=21% Similarity=0.465 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 042014 122 KVIQENAELKVEATELRQMLTDLQ 145 (169)
Q Consensus 122 ~l~~EN~~Lr~e~~~Lr~~L~~l~ 145 (169)
+++..|+-|...++.|..-|..+.
T Consensus 28 rlendnanlekdianlekdianle 51 (56)
T 3he4_A 28 RLENDNANLEKDIANLEKDIANLE 51 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcccchHHHHHHHHHHHHHHHH
Confidence 344455555555555555555443
No 194
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=41.15 E-value=1.4e+02 Score=23.99 Aligned_cols=8 Identities=13% Similarity=0.518 Sum_probs=3.0
Q ss_pred CCCCCCCC
Q 042014 154 KDLDDVPC 161 (169)
Q Consensus 154 ~~l~~~~~ 161 (169)
.++.+..|
T Consensus 194 v~v~~~~C 201 (256)
T 3na7_A 194 VTIKKQAC 201 (256)
T ss_dssp EECBTTBC
T ss_pred EEeeCCcc
Confidence 33344333
No 195
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=41.13 E-value=1.4e+02 Score=27.52 Aligned_cols=29 Identities=10% Similarity=-0.030 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 042014 92 LDELWSQVVWLRNENHQLVDKLNHVSGCH 120 (169)
Q Consensus 92 leeLe~qV~~L~~eN~~L~~~l~~l~~~~ 120 (169)
+.+..++=+.+.+||..++.+.......+
T Consensus 36 ~ae~~a~n~~i~aeNeaikkrNa~aka~Y 64 (497)
T 3iox_A 36 VAANNAANAALTAENTAIKKRNADAKADY 64 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555556666655555554443
No 196
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=40.86 E-value=63 Score=21.94 Aligned_cols=28 Identities=25% Similarity=0.303 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 88 KQKHLDELWSQVVWLRNENHQLVDKLNH 115 (169)
Q Consensus 88 Kq~~leeLe~qV~~L~~eN~~L~~~l~~ 115 (169)
|...+.+|+..+..-..++.+|+.++..
T Consensus 23 Kde~I~eLE~~L~~kd~eI~eLr~~LdK 50 (67)
T 1zxa_A 23 KEERIKELEKRLSEKEEEIQELKRKLHK 50 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777777777666666666655543
No 197
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=40.84 E-value=1.2e+02 Score=23.22 Aligned_cols=11 Identities=36% Similarity=0.616 Sum_probs=5.2
Q ss_pred HHhHHHHHHHH
Q 042014 75 ISNRESARRSR 85 (169)
Q Consensus 75 isNRESARRSR 85 (169)
++.|+++.+--
T Consensus 64 lkDk~~~e~l~ 74 (152)
T 4fla_A 64 ITDKEAAERLS 74 (152)
T ss_dssp CCSHHHHHHHH
T ss_pred cccHHHHHHHH
Confidence 34555554433
No 198
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=40.74 E-value=73 Score=21.07 Aligned_cols=21 Identities=29% Similarity=0.397 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 042014 94 ELWSQVVWLRNENHQLVDKLN 114 (169)
Q Consensus 94 eLe~qV~~L~~eN~~L~~~l~ 114 (169)
.|.-+|..|+.+|..|.+.++
T Consensus 14 aLkDqV~eL~qe~k~m~k~lE 34 (56)
T 2w6b_A 14 ALKDEVQELRQDNKKMKKSLE 34 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455667777777766666554
No 199
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=39.70 E-value=90 Score=21.43 Aligned_cols=38 Identities=18% Similarity=0.177 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 042014 89 QKHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQE 126 (169)
Q Consensus 89 q~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~E 126 (169)
...+..|+.++++-+.+-..++.++..+.+.++.-..|
T Consensus 20 e~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~e 57 (72)
T 3cve_A 20 EGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFE 57 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 34556666666666666666666666666666555554
No 200
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=39.25 E-value=1.1e+02 Score=22.35 Aligned_cols=58 Identities=17% Similarity=0.326 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042014 88 KQKHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTDLQ 145 (169)
Q Consensus 88 Kq~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l~ 145 (169)
....++.|..+-..|......|..++.........+..+-..|..++..|...|.++.
T Consensus 67 ~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~e 124 (129)
T 2fxo_A 67 AEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDLE 124 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666666666666666666666666666677777777777777777766654
No 201
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=38.87 E-value=77 Score=22.36 Aligned_cols=29 Identities=14% Similarity=0.193 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042014 90 KHLDELWSQVVWLRNENHQLVDKLNHVSG 118 (169)
Q Consensus 90 ~~leeLe~qV~~L~~eN~~L~~~l~~l~~ 118 (169)
+++.+.+.+...|+..|..|..++++|..
T Consensus 49 ~r~~e~e~r~k~le~~n~~l~~riqELE~ 77 (83)
T 4ath_A 49 QRAKDLENRQKKLEHANRHLLLRVQELEM 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 44555666666777777777776666544
No 202
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=38.73 E-value=1.8 Score=32.22 Aligned_cols=21 Identities=24% Similarity=0.260 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 042014 97 SQVVWLRNENHQLVDKLNHVS 117 (169)
Q Consensus 97 ~qV~~L~~eN~~L~~~l~~l~ 117 (169)
.+++.|..||..|..++..+.
T Consensus 72 ~e~e~L~~En~~l~~E~~~lk 92 (107)
T 3a5t_A 72 QEVEKLASENASMKLELDALR 92 (107)
T ss_dssp STTTTTTSTTSHHHHTTTSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444333333
No 203
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=38.11 E-value=1.1e+02 Score=21.76 Aligned_cols=18 Identities=22% Similarity=0.470 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 042014 92 LDELWSQVVWLRNENHQL 109 (169)
Q Consensus 92 leeLe~qV~~L~~eN~~L 109 (169)
++.|+.++..|+.+|..|
T Consensus 55 ie~l~eEi~~lk~en~eL 72 (83)
T 1uii_A 55 IEQKDNEIARLKKENKEL 72 (83)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 204
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=37.89 E-value=19 Score=23.19 Aligned_cols=21 Identities=10% Similarity=0.019 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 042014 89 QKHLDELWSQVVWLRNENHQL 109 (169)
Q Consensus 89 q~~leeLe~qV~~L~~eN~~L 109 (169)
..++++|+.+|..|+.....|
T Consensus 48 ~~~~~~Le~ri~~Le~~l~~l 68 (72)
T 2er8_A 48 RARNEAIEKRFKELTRTLTNL 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 467888888888887655443
No 205
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=37.65 E-value=78 Score=20.15 Aligned_cols=37 Identities=16% Similarity=0.217 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 79 ESARRSRMRKQKHLDELWSQVVWLRNENHQLVDKLNH 115 (169)
Q Consensus 79 ESARRSR~RKq~~leeLe~qV~~L~~eN~~L~~~l~~ 115 (169)
|-|-||=.|-++.++.|+.++..-+..+..+..++..
T Consensus 8 efAERsV~KLek~ID~LEdeL~~eKek~~~i~~eLD~ 44 (52)
T 2z5i_A 8 YHLENEVARLKKLVDDLEDELYAQKLKYKAISEELDH 44 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4566666666666666666665555555555554443
No 206
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=37.64 E-value=1e+02 Score=21.35 Aligned_cols=55 Identities=18% Similarity=0.189 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042014 91 HLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTDLQ 145 (169)
Q Consensus 91 ~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l~ 145 (169)
.+...+.....|...+..|..+.+.|..++..+..-...|-..-.+|-..|.+|+
T Consensus 29 ~l~k~e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~ 83 (89)
T 3bas_A 29 DLAKTERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLK 83 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666777777777777777776666666667777777777777777665
No 207
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=37.46 E-value=86 Score=26.42 Aligned_cols=28 Identities=14% Similarity=0.087 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 90 KHLDELWSQVVWLRNENHQLVDKLNHVS 117 (169)
Q Consensus 90 ~~leeLe~qV~~L~~eN~~L~~~l~~l~ 117 (169)
+.++.|+.+...|+.|-..|..+...+.
T Consensus 185 ~eie~L~~~~~~L~eEi~~Le~~~e~~~ 212 (315)
T 2ve7_A 185 FKLESLEAKNRALNEQIARLEQERSTAN 212 (315)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3555555555555555555554444443
No 208
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=37.37 E-value=1.2e+02 Score=22.11 Aligned_cols=50 Identities=12% Similarity=0.205 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 042014 91 HLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQM 140 (169)
Q Consensus 91 ~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~ 140 (169)
.+..+...+..|+.+-..++..+......+..|..=--.|..|++..|..
T Consensus 76 ~l~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Ld~EIatYRkL 125 (129)
T 3tnu_B 76 ALKDARNKLAELEEALQKAKQDMARLLREYQELMNTKLALDVEIATYRKL 125 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444445555555555555555555555555555445555555555543
No 209
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=37.32 E-value=1.2e+02 Score=22.17 Aligned_cols=51 Identities=14% Similarity=0.185 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 91 HLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQML 141 (169)
Q Consensus 91 ~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L 141 (169)
.+..+...+..|..+-..++..+......+..|..=--.|..|++..|..|
T Consensus 78 ~l~~~q~~i~~lE~eL~~~r~em~~ql~EYq~Ll~vKl~Ld~EIatYRkLL 128 (131)
T 3tnu_A 78 QLAQIQEMIGSVEEQLAQLRCEMEQQNQEYKILLDVKTRLEQEIATYRRLL 128 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 334444445555555555555555555555555544455555555555443
No 210
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=36.34 E-value=1.2e+02 Score=22.08 Aligned_cols=20 Identities=15% Similarity=0.023 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 042014 95 LWSQVVWLRNENHQLVDKLN 114 (169)
Q Consensus 95 Le~qV~~L~~eN~~L~~~l~ 114 (169)
|+.++..++..+..|...+.
T Consensus 50 L~~el~~l~~~~~sLE~~l~ 69 (131)
T 3tnu_A 50 LEIELQSQLSMKASLENSLE 69 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHH
Confidence 33333333333333333333
No 211
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=36.26 E-value=1.7e+02 Score=25.83 Aligned_cols=19 Identities=16% Similarity=0.281 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 042014 123 VIQENAELKVEATELRQML 141 (169)
Q Consensus 123 l~~EN~~Lr~e~~~Lr~~L 141 (169)
+.++=..|++++..|...+
T Consensus 74 l~~~~~~~~~~~~~~~~~~ 92 (455)
T 2dq0_A 74 LLAKSREIVKRIGELENEV 92 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333344444444443333
No 212
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=36.14 E-value=1.5e+02 Score=23.04 Aligned_cols=46 Identities=24% Similarity=0.201 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 042014 93 DELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELR 138 (169)
Q Consensus 93 eeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr 138 (169)
+.|..-|-.|+.|-..=+-+...+...+..|.-||..+++.+...|
T Consensus 115 e~LT~TiG~LrKELEdEklK~~E~MdSFE~LkvENE~vkerl~mYR 160 (167)
T 4gkw_A 115 ESLTETIGILRKELENEKLKAAENMDSFEKLSMENENLKEKIAHYR 160 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHH
Confidence 3333333334333333333333444445555556666655554433
No 213
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=35.22 E-value=2.7e+02 Score=25.57 Aligned_cols=17 Identities=24% Similarity=0.384 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHhhhc
Q 042014 131 KVEATELRQMLTDLQLN 147 (169)
Q Consensus 131 r~e~~~Lr~~L~~l~~~ 147 (169)
+.++..|...|.+|+..
T Consensus 566 ~~~~~~~~~ei~~l~~~ 582 (592)
T 1f5n_A 566 QKESRIMKNEIQDLQTK 582 (592)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 34566677777777655
No 214
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=35.07 E-value=1.2e+02 Score=21.43 Aligned_cols=27 Identities=7% Similarity=0.228 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 042014 97 SQVVWLRNENHQLVDKLNHVSGCHDKV 123 (169)
Q Consensus 97 ~qV~~L~~eN~~L~~~l~~l~~~~~~l 123 (169)
.++..|..+...|..+|..+......+
T Consensus 25 ~eL~~lEke~~~l~~el~~le~E~~~L 51 (96)
T 3q8t_A 25 QELEDVEKNRKVVAENLEKVQAEAERL 51 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444443333333
No 215
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=33.31 E-value=52 Score=22.87 Aligned_cols=52 Identities=13% Similarity=0.210 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 90 KHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQML 141 (169)
Q Consensus 90 ~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L 141 (169)
.+++.+...-..|..+...++..+.....++..-..--.....++..|+.-+
T Consensus 7 ~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~Lrkdv 58 (86)
T 3swk_A 7 RQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDV 58 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 3455555555555555555665555555555433333333344444444433
No 216
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=33.29 E-value=1.8e+02 Score=23.08 Aligned_cols=18 Identities=11% Similarity=0.060 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 042014 96 WSQVVWLRNENHQLVDKL 113 (169)
Q Consensus 96 e~qV~~L~~eN~~L~~~l 113 (169)
+..|..|+.+|..|..++
T Consensus 134 ertV~kLqkeiD~LEDeL 151 (175)
T 3mud_A 134 LDTTAKNEKSIDDLEEKV 151 (175)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444433
No 217
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=33.23 E-value=2.4e+02 Score=25.53 Aligned_cols=17 Identities=24% Similarity=0.133 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 042014 90 KHLDELWSQVVWLRNEN 106 (169)
Q Consensus 90 ~~leeLe~qV~~L~~eN 106 (169)
..+++|.++.+.+..+.
T Consensus 47 ~~~~~l~~~rn~~sk~i 63 (485)
T 3qne_A 47 FDLDEHNKKLNSVQKEI 63 (485)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444333
No 218
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=33.23 E-value=1.2e+02 Score=20.85 Aligned_cols=31 Identities=23% Similarity=0.219 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 042014 94 ELWSQVVWLRNENHQLVDKLNHVSGCHDKVI 124 (169)
Q Consensus 94 eLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~ 124 (169)
+|...|..|..|+..|..++..+.+.+..+.
T Consensus 3 ~L~k~i~~l~~E~eel~~klk~~~ee~~~~~ 33 (71)
T 1s1c_X 3 MLTKDIEILRRENEELTEKMKKAEEEYKLEK 33 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5777888888888888888888777666554
No 219
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=33.04 E-value=2.7e+02 Score=25.04 Aligned_cols=21 Identities=10% Similarity=0.140 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 042014 122 KVIQENAELKVEATELRQMLT 142 (169)
Q Consensus 122 ~l~~EN~~Lr~e~~~Lr~~L~ 142 (169)
.+..+=..|.+++.++...|.
T Consensus 127 ~l~~~i~~l~~~~~~~~~~l~ 147 (501)
T 1wle_A 127 EIRKQLTLLYPKEAQLEEQFY 147 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444443
No 220
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=32.75 E-value=42 Score=22.61 Aligned_cols=17 Identities=29% Similarity=0.249 Sum_probs=8.7
Q ss_pred cHHHHHHHHHHHhHHHH
Q 042014 65 IINERKQRRMISNRESA 81 (169)
Q Consensus 65 ~~deRR~RR~isNRESA 81 (169)
..-||+.|..+...-..
T Consensus 17 n~~Er~RR~~in~~f~~ 33 (80)
T 1hlo_A 17 NALERKRRDHIKDSFHS 33 (80)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 34455555555554443
No 221
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=32.46 E-value=1e+02 Score=22.52 Aligned_cols=38 Identities=18% Similarity=0.111 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 042014 94 ELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELK 131 (169)
Q Consensus 94 eLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr 131 (169)
.|-.+....+.|...|+.++..+...++....--..|.
T Consensus 8 ~~~~~~~~~e~e~~~l~~~~~el~~~l~~~~~~~~e~g 45 (125)
T 1joc_A 8 ALLERCLKGEGEIEKLQTKVLELQRKLDNTTAAVQELG 45 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555666777777777777776655544433333
No 222
>3m0d_C TNF receptor-associated factor 1; trimeric helix coiled coiled, acetylation, alternative splic apoptosis, coiled coil, cytoplasm; 2.80A {Homo sapiens}
Probab=31.80 E-value=1.1e+02 Score=20.04 Aligned_cols=58 Identities=21% Similarity=0.147 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042014 88 KQKHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTDLQ 145 (169)
Q Consensus 88 Kq~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l~ 145 (169)
|..-+.+|+.++..++.--..+.+++..+.-....+..++..=+..+..|.+++..+.
T Consensus 4 ~~~~~~~le~kl~~lEnIv~~l~~eve~~~~~lea~~rq~~~d~~~Ie~Le~kv~~l~ 61 (65)
T 3m0d_C 4 KEKLLAELEGKLRVFENIVAVLNKEVEASHLALATSIHQSQLDRERILSLEQRVVELQ 61 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 3445667777777766666666666666555555554444444555666666665554
No 223
>3thf_A Protein shroom; coiled-coil, anti-parallel, helical, RHO-kinase, actin-bindi protein binding, cytoskeleton regulator; 2.70A {Drosophila melanogaster}
Probab=30.92 E-value=1.7e+02 Score=23.60 Aligned_cols=30 Identities=13% Similarity=0.332 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 85 RMRKQKHLDELWSQVVWLRNENHQLVDKLN 114 (169)
Q Consensus 85 R~RKq~~leeLe~qV~~L~~eN~~L~~~l~ 114 (169)
+.||.+-++-|..++..|+.+-..|..++.
T Consensus 14 ~~Kk~ELi~~L~~kL~~L~~eqe~l~ee~~ 43 (190)
T 3thf_A 14 KQKMDELIKHLNQKIVSLKREQQTISEECS 43 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888888888888877777654
No 224
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=30.46 E-value=67 Score=28.30 Aligned_cols=45 Identities=18% Similarity=0.231 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042014 94 ELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTDLQ 145 (169)
Q Consensus 94 eLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l~ 145 (169)
+|..++..|+.+...|..+.+. +..|...|+.++..++..+..++
T Consensus 46 dl~~~lk~le~~~~~L~~e~e~-------l~~~~~~~~~e~~~~~ee~~~l~ 90 (428)
T 4b4t_K 46 DIYFKLKKLEKEYELLTLQEDY-------IKDEQRHLKRELKRAQEEVKRIQ 90 (428)
T ss_dssp --CHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHc
Confidence 3444444444444444333332 33344445555555555555554
No 225
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=30.35 E-value=90 Score=27.45 Aligned_cols=29 Identities=17% Similarity=0.155 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 042014 92 LDELWSQVVWLRNENHQLVDKLNHVSGCH 120 (169)
Q Consensus 92 leeLe~qV~~L~~eN~~L~~~l~~l~~~~ 120 (169)
+..|+.+...|..++..+..++..+..++
T Consensus 51 lk~le~~~~~L~~e~e~l~~~~~~~~~e~ 79 (428)
T 4b4t_K 51 LKKLEKEYELLTLQEDYIKDEQRHLKREL 79 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455666666666666666665544433
No 226
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=30.25 E-value=71 Score=23.66 Aligned_cols=25 Identities=12% Similarity=0.084 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 042014 94 ELWSQVVWLRNENHQLVDKLNHVSG 118 (169)
Q Consensus 94 eLe~qV~~L~~eN~~L~~~l~~l~~ 118 (169)
++..+|..|..++..|.+++..+..
T Consensus 29 ~l~~~v~~l~~e~k~l~ke~~~l~~ 53 (171)
T 2zvf_A 29 KLPKTVERFFEEWKDQRKEIERLKS 53 (171)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444433
No 227
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=30.09 E-value=1.5e+02 Score=20.99 Aligned_cols=51 Identities=14% Similarity=0.201 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 91 HLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQML 141 (169)
Q Consensus 91 ~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L 141 (169)
.+..+...+..|+.+-..++..+..-...+..|..=--.|..+++..|..|
T Consensus 38 e~~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Le~EIatYrkLL 88 (95)
T 3mov_A 38 EKDNSRRMLTDKEREMAEIRDQMQQQLNDYEQLLDVKLALDMEISAYRKLL 88 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555566665555556666666667777788777765
No 228
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=29.96 E-value=83 Score=19.68 Aligned_cols=31 Identities=16% Similarity=0.194 Sum_probs=17.6
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 042014 116 VSGCHDKVIQENAELKVEATELRQMLTDLQL 146 (169)
Q Consensus 116 l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l~~ 146 (169)
|.++++.+..|=+.-++++.+|+.++..+..
T Consensus 7 l~qkI~kVdrEI~Kte~kI~~lqkKlkeLee 37 (42)
T 2l5g_B 7 LIQNMDRVDREITMVEQQISKLKKKQQQLEE 37 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555556666666666665553
No 229
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=29.54 E-value=1.2e+02 Score=19.87 Aligned_cols=16 Identities=38% Similarity=0.476 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHhh
Q 042014 130 LKVEATELRQMLTDLQ 145 (169)
Q Consensus 130 Lr~e~~~Lr~~L~~l~ 145 (169)
.|.++.+|+..|..|+
T Consensus 54 ~k~Ei~elrr~iq~L~ 69 (77)
T 3trt_A 54 AKQESTEYRRQVQSLT 69 (77)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445555555555444
No 230
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=29.14 E-value=1.6e+02 Score=21.07 Aligned_cols=25 Identities=20% Similarity=0.166 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 042014 94 ELWSQVVWLRNENHQLVDKLNHVSG 118 (169)
Q Consensus 94 eLe~qV~~L~~eN~~L~~~l~~l~~ 118 (169)
.|+.++..|...-..++.++..+.+
T Consensus 99 ~l~~~~~~l~~~l~~l~~~i~~~~~ 123 (133)
T 1fxk_C 99 ELESTLQKMGENLRAITDIMMKLSP 123 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444333
No 231
>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A
Probab=28.89 E-value=2e+02 Score=22.30 Aligned_cols=11 Identities=36% Similarity=0.513 Sum_probs=7.0
Q ss_pred HHHHHHHHHHH
Q 042014 127 NAELKVEATEL 137 (169)
Q Consensus 127 N~~Lr~e~~~L 137 (169)
|..|+.++..+
T Consensus 199 n~~L~~eLp~l 209 (251)
T 2fic_A 199 NVDLQEELPSL 209 (251)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666666555
No 232
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=28.55 E-value=40 Score=24.68 Aligned_cols=15 Identities=27% Similarity=0.350 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHH
Q 042014 123 VIQENAELKVEATEL 137 (169)
Q Consensus 123 l~~EN~~Lr~e~~~L 137 (169)
+..+|..|...+.+|
T Consensus 96 l~~~n~~L~~riqeL 110 (118)
T 4ati_A 96 LEHANRHLLLRVQEL 110 (118)
T ss_dssp ---------------
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444333
No 233
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=28.50 E-value=1.2e+02 Score=19.35 Aligned_cols=24 Identities=21% Similarity=0.317 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 042014 95 LWSQVVWLRNENHQLVDKLNHVSG 118 (169)
Q Consensus 95 Le~qV~~L~~eN~~L~~~l~~l~~ 118 (169)
|..++..|...|-+|.+.-+.+..
T Consensus 8 lrkkiarlkkdnlqlerdeqnlek 31 (52)
T 3he5_B 8 LRKKIARLKKDNLQLERDEQNLEK 31 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhhhhhHhhHHH
Confidence 344555666666555554444433
No 234
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=28.16 E-value=1.7e+02 Score=21.15 Aligned_cols=52 Identities=17% Similarity=0.208 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 90 KHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQML 141 (169)
Q Consensus 90 ~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L 141 (169)
..+..|+.++.....+...|...+..-......+..+...+..++.+|...|
T Consensus 12 e~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasL 63 (97)
T 2eqb_B 12 EDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASL 63 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666666666666666666666666777777776666554
No 235
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=28.10 E-value=1.8e+02 Score=21.50 Aligned_cols=40 Identities=18% Similarity=0.171 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHhHHHHHHHHHHHH
Q 042014 91 HLDELWSQVVWLRNEN-------HQLVDKLNHVSGCHDKVIQENAEL 130 (169)
Q Consensus 91 ~leeLe~qV~~L~~eN-------~~L~~~l~~l~~~~~~l~~EN~~L 130 (169)
.+.-|+.||.--+..- ..+..+...|..++..|..+|.+|
T Consensus 63 ~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q~~~l 109 (110)
T 2v4h_A 63 TVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFNKL 109 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHHHHHhc
Confidence 6777777877655433 335555666666566665555543
No 236
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=27.86 E-value=1.6e+02 Score=20.74 Aligned_cols=57 Identities=12% Similarity=0.129 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042014 88 KQKHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTDL 144 (169)
Q Consensus 88 Kq~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l 144 (169)
+-..+..|..++..|..+-..+...+......+......-..--+++..|.++|+-+
T Consensus 42 ~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~Rriqll 98 (101)
T 3u1c_A 42 LEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNRRIQLV 98 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444443333333333322222222222233677777777654
No 237
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=27.80 E-value=1.7e+02 Score=26.59 Aligned_cols=72 Identities=13% Similarity=0.117 Sum_probs=29.2
Q ss_pred cHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 042014 65 IINERKQRRMISNRESA-RRSRMRKQKHLDELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATE 136 (169)
Q Consensus 65 ~~deRR~RR~isNRESA-RRSR~RKq~~leeLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~ 136 (169)
..++|-+|.+.++|-.. +.-|..=.....+|+.++.+++.+.......+....+....|..+-....++...
T Consensus 309 a~e~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~~~e~~~ 381 (575)
T 2i1j_A 309 AREEKLAKQAQREKLQLEIAARERAEKKQQEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAAKEE 381 (575)
T ss_dssp HHHHHHHHHHHHTTCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 34454455455554221 1112222233567777777777777776666666555555554444444444333
No 238
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=27.62 E-value=78 Score=19.39 Aligned_cols=18 Identities=28% Similarity=0.411 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 042014 91 HLDELWSQVVWLRNENHQ 108 (169)
Q Consensus 91 ~leeLe~qV~~L~~eN~~ 108 (169)
++..|+.++..|+.|.++
T Consensus 16 Qi~~l~~kl~~LkeEKHQ 33 (38)
T 2l5g_A 16 QILKLEEKLLALQEEKHQ 33 (38)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444443
No 239
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=27.28 E-value=1.2e+02 Score=18.96 Aligned_cols=28 Identities=18% Similarity=0.304 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 89 QKHLDELWSQVVWLRNENHQLVDKLNHV 116 (169)
Q Consensus 89 q~~leeLe~qV~~L~~eN~~L~~~l~~l 116 (169)
+..++++..++.....+-..+...+..+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~k~~~~~~ 38 (60)
T 3htk_A 11 ENQVEELTEKCSLKTDEFLKAKEKINEI 38 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444333
No 240
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=27.15 E-value=3.8e+02 Score=24.99 Aligned_cols=30 Identities=13% Similarity=0.165 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 042014 92 LDELWSQVVWLRNENHQLVDKLNHVSGCHD 121 (169)
Q Consensus 92 leeLe~qV~~L~~eN~~L~~~l~~l~~~~~ 121 (169)
-++|+.++..|+.+...-...|..|+..+.
T Consensus 112 S~ELRRrIqyLKekVdnQlsnIrvLQsnLe 141 (562)
T 3ghg_A 112 SEDLRSRIEVLKRKVIEKVQHIQLLQKNVR 141 (562)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444443333333333333333
No 241
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=27.06 E-value=2.5e+02 Score=22.72 Aligned_cols=23 Identities=13% Similarity=0.153 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCC
Q 042014 129 ELKVEATELRQMLTDLQLNSHYS 151 (169)
Q Consensus 129 ~Lr~e~~~Lr~~L~~l~~~~~~~ 151 (169)
.++.++..++..|....+.+|+.
T Consensus 140 ~~~~~l~~a~~~l~~~~i~AP~~ 162 (369)
T 4dk0_A 140 QAEIEVNTAETNLGYTKITSPID 162 (369)
T ss_dssp HHHHHHHHHHHTTCCSSCCCSCC
T ss_pred HHHHHHHHHHHHhhcCEEECCCC
Confidence 34444455555555555666665
No 242
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=26.92 E-value=1.3e+02 Score=27.31 Aligned_cols=8 Identities=38% Similarity=0.671 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 042014 82 RRSRMRKQ 89 (169)
Q Consensus 82 RRSR~RKq 89 (169)
|..|.||+
T Consensus 310 ~e~~~~~~ 317 (575)
T 2i1j_A 310 REEKLAKQ 317 (575)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 243
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=26.46 E-value=1.5e+02 Score=21.81 Aligned_cols=23 Identities=26% Similarity=0.237 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 042014 91 HLDELWSQVVWLRNENHQLVDKL 113 (169)
Q Consensus 91 ~leeLe~qV~~L~~eN~~L~~~l 113 (169)
.+.+|+.+|+.++..+.+|..-.
T Consensus 5 e~~~l~~qi~~~ekr~~RLKevF 27 (123)
T 4dzo_A 5 EVAELKKQVESAELKNQRLKEVF 27 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666655555554433
No 244
>3bbp_D GRIP and coiled-coil domain-containing protein 2; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens}
Probab=25.24 E-value=69 Score=22.13 Aligned_cols=43 Identities=16% Similarity=0.173 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 042014 104 NENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTDLQL 146 (169)
Q Consensus 104 ~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l~~ 146 (169)
..-..+.+++..+..-+..-++-|++|-+++.-|...|..+..
T Consensus 22 ~~L~~~~k~~~Hl~~LL~EsEatnarL~eq~~lLK~EIRRlER 64 (71)
T 3bbp_D 22 QKLSSTTKSADHLNGLLRETEATNAILMEQIKLLKSEIRRLER 64 (71)
T ss_dssp -------CTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHh
Confidence 3333334444555555555666677887777777777776654
No 245
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=25.02 E-value=2.4e+02 Score=21.89 Aligned_cols=11 Identities=27% Similarity=0.166 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 042014 102 LRNENHQLVDK 112 (169)
Q Consensus 102 L~~eN~~L~~~ 112 (169)
|++|+..+++.
T Consensus 65 Lrae~~~~QRn 75 (167)
T 4gkw_A 65 LRAELGTAQRN 75 (167)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 33333333333
No 246
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=24.99 E-value=1.8e+02 Score=20.31 Aligned_cols=13 Identities=15% Similarity=0.363 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHH
Q 042014 131 KVEATELRQMLTD 143 (169)
Q Consensus 131 r~e~~~Lr~~L~~ 143 (169)
+.+...|...|.+
T Consensus 94 ~~q~~~L~~kf~e 106 (127)
T 1ez3_A 94 KTQHSTLSRKFVE 106 (127)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4455666665544
No 247
>3n7n_E Monopolin complex subunit LRS4; meiosis, rDNA, replication; 3.90A {Saccharomyces cerevisiae}
Probab=24.39 E-value=16 Score=26.69 Aligned_cols=49 Identities=18% Similarity=0.157 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 042014 100 VWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTDLQLNSH 149 (169)
Q Consensus 100 ~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l~~~~~ 149 (169)
..+..|.-.|++++..|..++..+..||..||+ +.+....|.+.++.+.
T Consensus 39 ~~~~~Etl~LQrQv~qLt~~lQ~~~~Ene~Lke-~qKtqkal~ESKL~~~ 87 (95)
T 3n7n_E 39 KKVVDETLFLQRQIAQLNKQLQLSFQENEKLLS-VQKNQKALYQSKLSSK 87 (95)
T ss_dssp --------------------------------------------------
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 345666777888888888888888888988875 3333444444444443
No 248
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=24.05 E-value=1.8e+02 Score=20.06 Aligned_cols=54 Identities=19% Similarity=0.172 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 042014 94 ELWSQVVWLRNENHQLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTDLQLN 147 (169)
Q Consensus 94 eLe~qV~~L~~eN~~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l~~~ 147 (169)
+|..+|..-+.|...|..-++.+...+-.-..=|..|..+...++..+.++...
T Consensus 7 eL~~kl~~Kq~EI~rLnvlvgslR~KLiKYtelnKKLe~~~~~~q~s~~~l~k~ 60 (74)
T 2q6q_A 7 ELNFKLREKQNEIFELKKIAETLRSKLEKYVDITKKLEDQNLNLQIKISDLEKK 60 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhh
Confidence 444445544555555555555555455555556777777778888888777754
No 249
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=23.99 E-value=2.2e+02 Score=20.90 Aligned_cols=29 Identities=17% Similarity=0.157 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042014 89 QKHLDELWSQVVWLRNENHQLVDKLNHVS 117 (169)
Q Consensus 89 q~~leeLe~qV~~L~~eN~~L~~~l~~l~ 117 (169)
++++++|+.++..|+.....|...+....
T Consensus 87 ~~~~~~l~~~i~~L~~~~~~L~~~i~~~~ 115 (142)
T 3gp4_A 87 KKQRIELKNRIDVMQEALDRLDFKIDNYD 115 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555554444433
No 250
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=23.87 E-value=1.3e+02 Score=21.95 Aligned_cols=22 Identities=14% Similarity=0.262 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhc
Q 042014 126 ENAELKVEATELRQMLTDLQLN 147 (169)
Q Consensus 126 EN~~Lr~e~~~Lr~~L~~l~~~ 147 (169)
++..|...-..|..+|.++..+
T Consensus 92 ~~~~l~~~n~~L~~riqeLE~~ 113 (118)
T 4ati_A 92 RQKKLEHANRHLLLRVQELEMQ 113 (118)
T ss_dssp ----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555566666666665543
No 251
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=23.65 E-value=1.7e+02 Score=23.59 Aligned_cols=9 Identities=22% Similarity=0.335 Sum_probs=3.8
Q ss_pred CCcCCCCCC
Q 042014 43 TSSFSSNNS 51 (169)
Q Consensus 43 ~~~~s~~~s 51 (169)
-|+|.+-.|
T Consensus 69 qSaW~G~VS 77 (186)
T 3q4f_C 69 HSAWTGTVS 77 (186)
T ss_dssp SCEEEEEEE
T ss_pred cceeeeEEC
Confidence 344444333
No 252
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=22.51 E-value=1.1e+02 Score=17.10 Aligned_cols=9 Identities=33% Similarity=0.224 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 042014 98 QVVWLRNEN 106 (169)
Q Consensus 98 qV~~L~~eN 106 (169)
+|-+|..|.
T Consensus 8 evgelkgev 16 (27)
T 3v86_A 8 EVGELKGEV 16 (27)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhHH
Confidence 333333333
No 253
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=22.50 E-value=1.9e+02 Score=19.77 Aligned_cols=30 Identities=17% Similarity=0.207 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042014 89 QKHLDELWSQVVWLRNENHQLVDKLNHVSG 118 (169)
Q Consensus 89 q~~leeLe~qV~~L~~eN~~L~~~l~~l~~ 118 (169)
+..+..|+.++.+++.+-.....+...|..
T Consensus 34 q~~i~~lE~el~~~r~e~~~ql~EYq~Lln 63 (86)
T 1x8y_A 34 RRLLAEKEREMAEMRARMQQQLDEYQELLD 63 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444433
No 254
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=22.07 E-value=2.1e+02 Score=20.15 Aligned_cols=55 Identities=15% Similarity=0.117 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----HHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042014 91 HLDELWSQVVWLRNENHQLVDKLN-----HVSGCHDKVIQENAELKVEATELRQMLTDLQ 145 (169)
Q Consensus 91 ~leeLe~qV~~L~~eN~~L~~~l~-----~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l~ 145 (169)
.+..|+.+...|..+-..+..++. .....+-.+..+-..+|.-...|-.+|+++.
T Consensus 9 ~i~~L~~q~~~L~~ei~~~~a~L~~~~~~~~~~~hI~~Lh~YNeiKD~gq~L~g~iA~~r 68 (85)
T 3viq_B 9 RVHLLEQQKEQLESSLQDALAKLKNRDAKQTVQKHIDLLHTYNEIRDIALGMIGKVAEHE 68 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHc
Confidence 344444444444444444433221 1223444555566666666666666666654
No 255
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=22.00 E-value=83 Score=22.56 Aligned_cols=25 Identities=16% Similarity=0.175 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q 042014 122 KVIQENAELKVEATELRQMLTDLQL 146 (169)
Q Consensus 122 ~l~~EN~~Lr~e~~~Lr~~L~~l~~ 146 (169)
++..+...|+.++..++..|..++.
T Consensus 11 ~l~~~~~~l~~~i~~lkeel~~L~~ 35 (109)
T 2wg5_A 11 QLEDKVEELLSKNYHLENEVARLRS 35 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3455556666666666666666654
No 256
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=21.58 E-value=4.3e+02 Score=23.50 Aligned_cols=38 Identities=11% Similarity=0.063 Sum_probs=17.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042014 108 QLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTDLQ 145 (169)
Q Consensus 108 ~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l~ 145 (169)
.|..++..|++....-...=..|+.-+.+++..+..|.
T Consensus 117 eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE 154 (390)
T 1deq_A 117 DLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLE 154 (390)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444443333333445555555555554444
No 257
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=21.20 E-value=1.9e+02 Score=19.16 Aligned_cols=22 Identities=9% Similarity=0.087 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 042014 93 DELWSQVVWLRNENHQLVDKLN 114 (169)
Q Consensus 93 eeLe~qV~~L~~eN~~L~~~l~ 114 (169)
..|-.+|.+|+..+.+--.++.
T Consensus 21 ~~L~~kv~~Le~~c~e~eQEie 42 (58)
T 3a2a_A 21 VQLAAKIQHLEFSCSEKEQEIE 42 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555444444
No 258
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=21.13 E-value=55 Score=24.39 Aligned_cols=20 Identities=20% Similarity=0.207 Sum_probs=11.5
Q ss_pred HHHhHHHHHHHHHHHHHHHH
Q 042014 115 HVSGCHDKVIQENAELKVEA 134 (169)
Q Consensus 115 ~l~~~~~~l~~EN~~Lr~e~ 134 (169)
.|..++.+|.-||..||.++
T Consensus 12 eLaaeL~kLqmENK~LKkkl 31 (110)
T 2oa5_A 12 EMVKEVERLKLENKTLKQKV 31 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444555666777666554
No 259
>3fx0_A NF-kappa-B essential modulator; coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia, HOST-virus interaction; 3.20A {Homo sapiens}
Probab=20.82 E-value=43 Score=24.44 Aligned_cols=17 Identities=24% Similarity=0.235 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 042014 87 RKQKHLDELWSQVVWLR 103 (169)
Q Consensus 87 RKq~~leeLe~qV~~L~ 103 (169)
.|+..+++|...+..++
T Consensus 35 ~KQ~~ideLKe~i~q~~ 51 (96)
T 3fx0_A 35 AKQEVIDKLKEEAEQHK 51 (96)
T ss_dssp TTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 36667777777666665
No 260
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=20.81 E-value=3.5e+02 Score=23.46 Aligned_cols=65 Identities=14% Similarity=0.059 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 042014 85 RMRKQKHLDELWSQVVWLRNENH-QLVDKLNHVSGCHDKVIQENAELKVEATELRQMLTDLQLNSH 149 (169)
Q Consensus 85 R~RKq~~leeLe~qV~~L~~eN~-~L~~~l~~l~~~~~~l~~EN~~Lr~e~~~Lr~~L~~l~~~~~ 149 (169)
|+.-+..+++|.++.+.+..+.. .-......+..+...+..+=..|.+++.++...|..+-..-|
T Consensus 37 ~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip 102 (421)
T 1ses_A 37 VQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALREKEARLEALLLQVP 102 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
No 261
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=20.39 E-value=1.7e+02 Score=18.32 Aligned_cols=25 Identities=20% Similarity=0.194 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 042014 120 HDKVIQENAELKVEATELRQMLTDL 144 (169)
Q Consensus 120 ~~~l~~EN~~Lr~e~~~Lr~~L~~l 144 (169)
+..++.|=..|...+..|...|+.+
T Consensus 22 laaleselqalekklaalksklqal 46 (48)
T 1g6u_A 22 LAALESELQALEKKLAALKSKLQAL 46 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445555555555555555555544
No 262
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=20.27 E-value=1.8e+02 Score=20.96 Aligned_cols=15 Identities=13% Similarity=0.082 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHHH
Q 042014 99 VVWLRNENHQLVDKL 113 (169)
Q Consensus 99 V~~L~~eN~~L~~~l 113 (169)
+.....++..|+.++
T Consensus 91 ~~~e~~~~~~L~~~i 105 (117)
T 3kin_B 91 YEKEKEKNKALKSVI 105 (117)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 263
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=20.21 E-value=4.8e+02 Score=23.49 Aligned_cols=20 Identities=25% Similarity=0.310 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 042014 123 VIQENAELKVEATELRQMLT 142 (169)
Q Consensus 123 l~~EN~~Lr~e~~~Lr~~L~ 142 (169)
+.+|=..|++++.+|...+.
T Consensus 76 l~~~~~~l~~~i~~le~~~~ 95 (485)
T 3qne_A 76 LIAEKEKLSNEKKEIIEKEA 95 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444455555544444443
No 264
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=20.03 E-value=2.2e+02 Score=19.61 Aligned_cols=19 Identities=5% Similarity=0.272 Sum_probs=7.3
Q ss_pred HHHHHHHHHHhHHHHHHHH
Q 042014 108 QLVDKLNHVSGCHDKVIQE 126 (169)
Q Consensus 108 ~L~~~l~~l~~~~~~l~~E 126 (169)
.|...+..|+.++++|.+|
T Consensus 11 ~LE~sld~LQTrfARLLaE 29 (74)
T 3swf_A 11 RMESSVDLLQTRFARILAE 29 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
Done!