BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042017
(156 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1M21|A Chain A, Crystal Structure Analysis Of The Peptide Amidase Pam In
Complex With The Competitive Inhibitor Chymostatin
pdb|1M21|B Chain B, Crystal Structure Analysis Of The Peptide Amidase Pam In
Complex With The Competitive Inhibitor Chymostatin
pdb|1M22|A Chain A, X-Ray Structure Of Native Peptide Amidase From
Stenotrophomonas Maltophilia At 1.4 A
pdb|1M22|B Chain B, X-Ray Structure Of Native Peptide Amidase From
Stenotrophomonas Maltophilia At 1.4 A
Length = 503
Score = 135 bits (339), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 72/147 (48%), Positives = 93/147 (63%), Gaps = 11/147 (7%)
Query: 1 NPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAG 60
NPY +S PC NLA+V++GTETDGSI+CP++ N VVGLKPT+GL SR G
Sbjct: 154 NPYRISHSPCGSSSGSAVAVAANLASVAIGTETDGSIVCPAAINGVVGLKPTVGLVSRDG 213
Query: 61 VIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYDPAT-----RAASEYIPRGGYKQFLR 115
+IPI+ QD+ GP+ R+VADAA VL AIAG D DPAT RA +Y R L
Sbjct: 214 IIPISFSQDTAGPMARSVADAAAVLTAIAGRDDADPATATMPGRAVYDYTAR------LD 267
Query: 116 PHGLKGKRLGIVRNPFFNFDEGSPLAQ 142
P GL+GKR+G+++ P + PL +
Sbjct: 268 PQGLRGKRIGLLQTPLLKYRGMPPLIE 294
>pdb|3AL0|A Chain A, Crystal Structure Of The Glutamine Transamidosome From
Thermotoga Maritima In The Glutamylation State
Length = 475
Score = 68.6 bits (166), Expect = 2e-12, Method: Composition-based stats.
Identities = 36/98 (36%), Positives = 51/98 (52%)
Query: 1 NPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAG 60
NP+ L P + +LG++T GS+ P+S VVG KPT GL SR G
Sbjct: 130 NPWDLERVPGGSSGGSAAAVSAGMVVAALGSDTGGSVRQPASLCGVVGYKPTYGLVSRYG 189
Query: 61 VIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYDPAT 98
++ D +GPI +TV DAA +++ I+G D D T
Sbjct: 190 LVAFASSLDQIGPITKTVRDAAILMEIISGRDENDATT 227
>pdb|3H0L|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|D Chain D, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|G Chain G, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|J Chain J, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|M Chain M, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|P Chain P, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|S Chain S, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|V Chain V, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|D Chain D, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|G Chain G, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|J Chain J, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|M Chain M, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|P Chain P, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|S Chain S, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|V Chain V, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|D Chain D, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|G Chain G, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|J Chain J, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|M Chain M, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|P Chain P, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|S Chain S, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|V Chain V, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
Length = 478
Score = 66.6 bits (161), Expect = 5e-12, Method: Composition-based stats.
Identities = 40/127 (31%), Positives = 69/127 (54%), Gaps = 6/127 (4%)
Query: 25 AAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYV 84
A VSLG++T GSI P+S V+G+KPT G SR G++ D +G R D A V
Sbjct: 160 APVSLGSDTGGSIRQPASFCGVIGIKPTYGRVSRYGLVAFASSLDQIGVFGRRTEDVALV 219
Query: 85 LDAIAGFDHYDPATRAASEYIPRGGYKQFLRPHGLKGKRLGIVRNPFFNFDEGSPLAQVF 144
L+ I+G+D D + S +P + + ++ +KG ++G+ + FF ++ + + F
Sbjct: 220 LEVISGWDEKD----STSAKVPVPEWSEEVKKE-VKGLKIGLPKE-FFEYELQPQVKEAF 273
Query: 145 DHHLHTL 151
++ + L
Sbjct: 274 ENFIKEL 280
>pdb|2DF4|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab
Complexed With Mn2+
pdb|2DQN|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab
Complexed With Asn
pdb|2G5H|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab
pdb|2G5I|A Chain A, Structure Of Trna-dependent Amidotransferase Gatcab
Complexed With Adp-alf4
pdb|3IP4|A Chain A, The High Resolution Structure Of Gatcab
pdb|2F2A|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab
Complexed With Gln
Length = 485
Score = 66.2 bits (160), Expect = 7e-12, Method: Composition-based stats.
Identities = 37/98 (37%), Positives = 51/98 (52%)
Query: 1 NPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAG 60
NP+ A P L +SLG++T GSI P++ VVG+KPT G SR G
Sbjct: 143 NPFDHKAVPGGSSGGSAAAVAAGLVPLSLGSDTGGSIRQPAAYCGVVGMKPTYGRVSRFG 202
Query: 61 VIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYDPAT 98
++ D +GP+ R V D A VL+AI+G D D +
Sbjct: 203 LVAFASSLDQIGPLTRNVKDNAIVLEAISGADVNDSTS 240
>pdb|3A1K|A Chain A, Crystal Structure Of Rhodococcus Sp. N771 Amidase
Length = 521
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 55/104 (52%), Gaps = 4/104 (3%)
Query: 28 SLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDA 87
++G + GSI P++ VVG KPT GL G PI D +GPI RTV DAA +L
Sbjct: 187 AIGGDQGGSIRIPAAFCGVVGHKPTFGLVPYTGAFPIERTIDHLGPITRTVHDAALMLSV 246
Query: 88 IAGFDHYDPATRAASEYIPRGGYKQFLRPHGLKGKRLGIVRNPF 131
IAG D DP ++ + G Y L + G R+GIVR F
Sbjct: 247 IAGRDGNDPRQ---ADSVEAGDYLSTLDSD-VDGLRIGIVREGF 286
>pdb|3A1I|A Chain A, Crystal Structure Of Rhodococcus Sp. N-771 Amidase
Complexed With Benzamide
Length = 521
Score = 64.3 bits (155), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 55/104 (52%), Gaps = 4/104 (3%)
Query: 28 SLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDA 87
++G + G+I P++ VVG KPT GL G PI D +GPI RTV DAA +L
Sbjct: 187 AIGGDQGGAIRIPAAFCGVVGHKPTFGLVPYTGAFPIERTIDHLGPITRTVHDAALMLSV 246
Query: 88 IAGFDHYDPATRAASEYIPRGGYKQFLRPHGLKGKRLGIVRNPF 131
IAG D DP ++ + G Y L + G R+GIVR F
Sbjct: 247 IAGRDGNDPRQ---ADSVEAGDYLSTLDSD-VDGLRIGIVREGF 286
>pdb|2GI3|A Chain A, Crystal Structure Of Glutamyl-Trna(Gln) Amidotransferase
Subunit A (Tm1272) From Thermotoga Maritima At 1.80 A
Resolution
Length = 476
Score = 63.9 bits (154), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 49/98 (50%)
Query: 1 NPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAG 60
NP+ L P +LG++T GS+ P+S VVG KPT GL SR G
Sbjct: 131 NPWDLERVPGGSSGGSAAAVSAGXVVAALGSDTGGSVRQPASLCGVVGYKPTYGLVSRYG 190
Query: 61 VIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYDPAT 98
++ D +GPI +TV DAA + + I+G D D T
Sbjct: 191 LVAFASSLDQIGPITKTVRDAAILXEIISGRDENDATT 228
>pdb|2DC0|A Chain A, Crystal Structure Of Amidase
pdb|2DC0|B Chain B, Crystal Structure Of Amidase
Length = 434
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 56/115 (48%), Gaps = 15/115 (13%)
Query: 28 SLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDA 87
SLGT+T GSI P+ N VVG KP+ G S G +P++ D GP+ R+V DA ++ +
Sbjct: 163 SLGTDTGGSIRIPAGFNGVVGFKPSYGRVSLEGALPLSRSTDHAGPLTRSVRDAHFLTEI 222
Query: 88 IAGFDHYDPATRAASEYIPRGGYKQ--FLRPHGLKGKRLGI-VRNPFFNFDEGSP 139
+AG E IP G + F P RLG+ VR F E P
Sbjct: 223 LAG------------ESIPLEGVQNPVFGVPLDFLEGRLGVEVRKAFTRLLEDLP 265
>pdb|3KFU|E Chain E, Crystal Structure Of The Transamidosome
pdb|3KFU|H Chain H, Crystal Structure Of The Transamidosome
Length = 471
Score = 53.9 bits (128), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 39/65 (60%)
Query: 31 TETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAG 90
++T GS+ P++ V GLKPT G SR G+I D +GP+ R+V D A ++DA AG
Sbjct: 160 SDTGGSVRQPAAFCGVYGLKPTYGRVSRFGLIAYASSLDQIGPMARSVRDLALLMDAAAG 219
Query: 91 FDHYD 95
D D
Sbjct: 220 PDPLD 224
>pdb|4GYR|A Chain A, Granulibacter Bethesdensis Allophanate Hydrolase Apo
pdb|4GYR|B Chain B, Granulibacter Bethesdensis Allophanate Hydrolase Apo
pdb|4GYS|A Chain A, Granulibacter Bethesdensis Allophanate Hydrolase
Co-crystallized With Malonate
pdb|4GYS|B Chain B, Granulibacter Bethesdensis Allophanate Hydrolase
Co-crystallized With Malonate
Length = 621
Score = 53.1 bits (126), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 61/124 (49%), Gaps = 11/124 (8%)
Query: 28 SLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDA 87
SLGT+T GS P++ N++VG+KPT GL S +GV+P D V +VA+ +
Sbjct: 193 SLGTDTAGSGRVPAAFNNLVGVKPTKGLLSTSGVVPACRSLDCVTVFAASVAEGTLIRRI 252
Query: 88 IAGFDHYDPATRAASEYIPRGGYKQFLRPHGLKGKRLGIVRNPFFNFDEGSPLAQVFDHH 147
G+D DP +R + K+ L PH G R+G+ R F + A ++
Sbjct: 253 AEGYDAADPYSRPSQ--------KRRL-PH--VGLRVGVPRQDQREFYGNTAYAALYQRA 301
Query: 148 LHTL 151
L +
Sbjct: 302 LDEM 305
>pdb|3A2P|A Chain A, Structure Of 6-Aminohexanoate Cyclic Dimer Hydrolase
Length = 493
Score = 36.2 bits (82), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 9/70 (12%)
Query: 27 VSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSV------GPICRTVAD 80
V+ G + GS+ P+S VVGLKPT G S P+ D+V G R+V D
Sbjct: 165 VAHGNDAAGSVRIPASVCGVVGLKPTRGRISPG---PLVTDSDNVAGAAHEGLFARSVRD 221
Query: 81 AAYVLDAIAG 90
A +LD ++G
Sbjct: 222 IAALLDVVSG 231
>pdb|3A2Q|A Chain A, Structure Of 6-Aminohexanoate Cyclic Dimer Hydrolase
Complexed With Substrate
Length = 493
Score = 35.0 bits (79), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 9/70 (12%)
Query: 27 VSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSV------GPICRTVAD 80
V+ G + G++ P+S VVGLKPT G S P+ D+V G R+V D
Sbjct: 165 VAHGNDAAGAVRIPASVCGVVGLKPTRGRISPG---PLVTDSDNVAGAAHEGLFARSVRD 221
Query: 81 AAYVLDAIAG 90
A +LD ++G
Sbjct: 222 IAALLDVVSG 231
>pdb|1OBK|A Chain A, Crystal Structure Of The R158q Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1OBK|B Chain B, Crystal Structure Of The R158q Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
Length = 414
Score = 32.7 bits (73), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 44/105 (41%), Gaps = 19/105 (18%)
Query: 27 VSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLD 86
++LGT+T GS++ P++ +KP+ + GV + D+VG D A L
Sbjct: 146 LALGTQTGGSVIQPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLL 205
Query: 87 AIAGFDHYDPATRAASEYIPRGGYKQFLRPHGLKGKRLGIVRNPF 131
A+ G + S +P K R+G+VR F
Sbjct: 206 AMTGRSEF-------SGIVP------------AKAPRIGVVRQEF 231
>pdb|1O9N|A Chain A, Crystal Structure Of The K62a Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1O9N|B Chain B, Crystal Structure Of The K62a Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
Length = 414
Score = 32.3 bits (72), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 44/105 (41%), Gaps = 19/105 (18%)
Query: 27 VSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLD 86
++LGT+T GS++ P++ +KP+ + GV + D+VG D A L
Sbjct: 146 LALGTQTGGSVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLL 205
Query: 87 AIAGFDHYDPATRAASEYIPRGGYKQFLRPHGLKGKRLGIVRNPF 131
A+ G + S +P K R+G+VR F
Sbjct: 206 AMTGRSEF-------SGIVP------------AKAPRIGVVRQEF 231
>pdb|1OCK|A Chain A, The Crystal Structure Of Malonamidase E2 From
Bradyrhizobium Japonicum
pdb|1OCK|B Chain B, The Crystal Structure Of Malonamidase E2 From
Bradyrhizobium Japonicum
pdb|1OCL|A Chain A, The Crystal Structure Of Malonamidase E2 Complexed With
Malonate From Bradyrhizobium Japonicum
pdb|1OCL|B Chain B, The Crystal Structure Of Malonamidase E2 Complexed With
Malonate From Bradyrhizobium Japonicum
pdb|1OCM|A Chain A, The Crystal Structure Of Malonamidase E2 Covalently
Complexed With Pyrophosphate From Bradyrhizobium
Japonicum
pdb|1OCM|B Chain B, The Crystal Structure Of Malonamidase E2 Covalently
Complexed With Pyrophosphate From Bradyrhizobium
Japonicum
Length = 412
Score = 32.3 bits (72), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 44/105 (41%), Gaps = 19/105 (18%)
Query: 27 VSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLD 86
++LGT+T GS++ P++ +KP+ + GV + D+VG D A L
Sbjct: 146 LALGTQTGGSVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLL 205
Query: 87 AIAGFDHYDPATRAASEYIPRGGYKQFLRPHGLKGKRLGIVRNPF 131
A+ G + S +P K R+G+VR F
Sbjct: 206 AMTGRSEF-------SGIVP------------AKAPRIGVVRQEF 231
>pdb|1OBL|A Chain A, Crystal Structure Of The S133a Mutant Of Malonamidase E2
Complexed With Malonate From Bradyrhizobium Japonicum
pdb|1OBL|B Chain B, Crystal Structure Of The S133a Mutant Of Malonamidase E2
Complexed With Malonate From Bradyrhizobium Japonicum
Length = 414
Score = 32.3 bits (72), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 44/105 (41%), Gaps = 19/105 (18%)
Query: 27 VSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLD 86
++LGT+T GS++ P++ +KP+ + GV + D+VG D A L
Sbjct: 146 LALGTQTGGSVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLL 205
Query: 87 AIAGFDHYDPATRAASEYIPRGGYKQFLRPHGLKGKRLGIVRNPF 131
A+ G + S +P K R+G+VR F
Sbjct: 206 AMTGRSEF-------SGIVP------------AKAPRIGVVRQEF 231
>pdb|1O9O|A Chain A, Crystal Structure Of The S131a Mutant Of Malonamidase E2
Complexed With Malonamate From Bradyrhizobium Japonicum
pdb|1O9O|B Chain B, Crystal Structure Of The S131a Mutant Of Malonamidase E2
Complexed With Malonamate From Bradyrhizobium Japonicum
pdb|1O9P|A Chain A, Crystal Structure Of The S131a Mutant Of Malonamidase E2
Complexed With Malonate From Bradyrhizobium Japonicum
pdb|1O9P|B Chain B, Crystal Structure Of The S131a Mutant Of Malonamidase E2
Complexed With Malonate From Bradyrhizobium Japonicum
Length = 414
Score = 32.3 bits (72), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 44/105 (41%), Gaps = 19/105 (18%)
Query: 27 VSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLD 86
++LGT+T GS++ P++ +KP+ + GV + D+VG D A L
Sbjct: 146 LALGTQTGGSVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLL 205
Query: 87 AIAGFDHYDPATRAASEYIPRGGYKQFLRPHGLKGKRLGIVRNPF 131
A+ G + S +P K R+G+VR F
Sbjct: 206 AMTGRSEF-------SGIVP------------AKAPRIGVVRQEF 231
>pdb|1OBI|A Chain A, Crystal Structure Of The G130a Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1OBI|B Chain B, Crystal Structure Of The G130a Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
Length = 414
Score = 32.0 bits (71), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 44/105 (41%), Gaps = 19/105 (18%)
Query: 27 VSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLD 86
++LGT+T GS++ P++ +KP+ + GV + D+VG D A L
Sbjct: 146 LALGTQTGGSVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLL 205
Query: 87 AIAGFDHYDPATRAASEYIPRGGYKQFLRPHGLKGKRLGIVRNPF 131
A+ G + S +P K R+G+VR F
Sbjct: 206 AMTGRSEF-------SGIVP------------AKAPRIGVVRQEF 231
>pdb|2WAP|A Chain A, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With The Drug-Like Urea
Inhibitor Pf-3845
pdb|2WAP|B Chain B, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With The Drug-Like Urea
Inhibitor Pf-3845
Length = 543
Score = 31.6 bits (70), Expect = 0.20, Method: Composition-based stats.
Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Query: 31 TETDGSILCPSSSNSVVGLKPTLGLTSRAG----VIPITPRQDSVGPICRTV 78
T+ GSI PS+ + GLKPT S++G V T Q S+GP+ R V
Sbjct: 206 TDIGGSIRFPSAFCGICGLKPTGNRLSKSGLKGCVYGQTAVQLSLGPMARDV 257
>pdb|2VYA|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase Conjugated
With The Drug-Like Inhibitor Pf-750
pdb|2VYA|B Chain B, Crystal Structure Of Fatty Acid Amide Hydrolase Conjugated
With The Drug-Like Inhibitor Pf-750
Length = 587
Score = 31.6 bits (70), Expect = 0.20, Method: Composition-based stats.
Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Query: 31 TETDGSILCPSSSNSVVGLKPTLGLTSRAG----VIPITPRQDSVGPICRTV 78
T+ GSI PS+ + GLKPT S++G V T Q S+GP+ R V
Sbjct: 244 TDIGGSIRFPSAFCGICGLKPTGNRLSKSGLKGCVYGQTAVQLSLGPMARDV 295
>pdb|3QK5|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase With Small
Molecule Inhibitor
pdb|3QK5|B Chain B, Crystal Structure Of Fatty Acid Amide Hydrolase With Small
Molecule Inhibitor
pdb|3QJ8|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|3QJ8|B Chain B, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|3QJ9|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase With Small
Molecule Inhibitor
pdb|3QJ9|B Chain B, Crystal Structure Of Fatty Acid Amide Hydrolase With Small
Molecule Inhibitor
pdb|3QKV|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase With Small
Molecule Compound
pdb|3QKV|B Chain B, Crystal Structure Of Fatty Acid Amide Hydrolase With Small
Molecule Compound
Length = 587
Score = 31.6 bits (70), Expect = 0.21, Method: Composition-based stats.
Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Query: 31 TETDGSILCPSSSNSVVGLKPTLGLTSRAG----VIPITPRQDSVGPICRTV 78
T+ GSI PS+ + GLKPT S++G V T Q S+GP+ R V
Sbjct: 244 TDIGGSIRFPSAFCGICGLKPTGNRLSKSGLKGCVYGQTAVQLSLGPMARDV 295
>pdb|4HBP|A Chain A, Crystal Structure Of Faah In Complex With Inhibitor
pdb|4HBP|B Chain B, Crystal Structure Of Faah In Complex With Inhibitor
Length = 550
Score = 31.6 bits (70), Expect = 0.21, Method: Composition-based stats.
Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Query: 31 TETDGSILCPSSSNSVVGLKPTLGLTSRAG----VIPITPRQDSVGPICRTV 78
T+ GSI PS+ + GLKPT S++G V T Q S+GP+ R V
Sbjct: 207 TDIGGSIRFPSAFCGICGLKPTGNRLSKSGLKGCVYGQTAVQLSLGPMARDV 258
>pdb|1MT5|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|B Chain B, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|C Chain C, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|D Chain D, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|E Chain E, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|F Chain F, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|G Chain G, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|H Chain H, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|I Chain I, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|J Chain J, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|K Chain K, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|L Chain L, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|M Chain M, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|N Chain N, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|O Chain O, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|P Chain P, Crystal Structure Of Fatty Acid Amide Hydrolase
Length = 537
Score = 31.6 bits (70), Expect = 0.21, Method: Composition-based stats.
Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Query: 31 TETDGSILCPSSSNSVVGLKPTLGLTSRAG----VIPITPRQDSVGPICRTV 78
T+ GSI PS+ + GLKPT S++G V T Q S+GP+ R V
Sbjct: 200 TDIGGSIRFPSAFCGICGLKPTGNRLSKSGLKGCVYGQTAVQLSLGPMARDV 251
>pdb|4DO3|A Chain A, Structure Of Faah With A Non-steroidal Anti-inflammatory
Drug
pdb|4DO3|B Chain B, Structure Of Faah With A Non-steroidal Anti-inflammatory
Drug
Length = 571
Score = 31.2 bits (69), Expect = 0.23, Method: Composition-based stats.
Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Query: 31 TETDGSILCPSSSNSVVGLKPTLGLTSRAG----VIPITPRQDSVGPICRTV 78
T+ GSI PS+ + GLKPT S++G V T Q S+GP+ R V
Sbjct: 226 TDIGGSIRFPSAFCGICGLKPTGNRLSKSGLKGCVYGQTAVQLSLGPMARDV 277
>pdb|2WJ1|A Chain A, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With
7-Phenyl-1-(4-(Pyridin-2- Yl)oxazol-2-Yl)heptan-1-One,
An Alpha-Ketooxazole
pdb|2WJ1|B Chain B, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With
7-Phenyl-1-(4-(Pyridin-2- Yl)oxazol-2-Yl)heptan-1-One,
An Alpha-Ketooxazole
pdb|2WJ2|A Chain A, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With
7-Phenyl-1-(5-(Pyridin-2- Yl)oxazol-2-Yl)heptan-1-One,
An Alpha-Ketooxazole
pdb|2WJ2|B Chain B, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With
7-Phenyl-1-(5-(Pyridin-2- Yl)oxazol-2-Yl)heptan-1-One,
An Alpha-Ketooxazole
pdb|3K7F|A Chain A, Crystal Structure Analysis Of A
PhenhexylOXAZOLECARBOXYPYRIDINE ALPHA-Ketoheterocycle
Inhibitor Bound To A Humanized Variant Of Fatty Acid
Amide Hydrolase'
pdb|3K7F|B Chain B, Crystal Structure Analysis Of A
PhenhexylOXAZOLECARBOXYPYRIDINE ALPHA-Ketoheterocycle
Inhibitor Bound To A Humanized Variant Of Fatty Acid
Amide Hydrolase'
pdb|3K83|A Chain A, Crystal Structure Analysis Of A
BiphenylOXAZOLECARBOXYPYRIDINE ALPHA-Ketoheterocycle
Inhibitor Bound To A Humanized Variant Of Fatty Acid
Amide Hydrolase
pdb|3K83|B Chain B, Crystal Structure Analysis Of A
BiphenylOXAZOLECARBOXYPYRIDINE ALPHA-Ketoheterocycle
Inhibitor Bound To A Humanized Variant Of Fatty Acid
Amide Hydrolase
pdb|3K84|A Chain A, Crystal Structure Analysis Of A OleylOXADIAZOLEPYRIDINE
Inhibitor Bound To A Humanized Variant Of Fatty Acid
Amide Hydrolase
pdb|3K84|B Chain B, Crystal Structure Analysis Of A OleylOXADIAZOLEPYRIDINE
Inhibitor Bound To A Humanized Variant Of Fatty Acid
Amide Hydrolase
pdb|3LJ6|A Chain A, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With The Drug-Like Urea
Inhibitor Pf-3845 At 2.42a Resolution
pdb|3LJ6|B Chain B, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With The Drug-Like Urea
Inhibitor Pf-3845 At 2.42a Resolution
pdb|3LJ7|A Chain A, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With Carbamate Inhibitor
Urb597
pdb|3LJ7|B Chain B, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With Carbamate Inhibitor
Urb597
pdb|3OJ8|A Chain A, Alpha-Ketoheterocycle Inhibitors Of Fatty Acid Amide
Hydrolase Containing Additional Conformational
Contraints In The Acyl Side Chain
pdb|3OJ8|B Chain B, Alpha-Ketoheterocycle Inhibitors Of Fatty Acid Amide
Hydrolase Containing Additional Conformational
Contraints In The Acyl Side Chain
pdb|3PPM|A Chain A, Crystal Structure Of A Noncovalently Bound
Alpha-Ketoheterocycle Inhibitor
(PhenhexylOXADIAZOLEPYRIDINE) TO A HUMANIZED VARIANT OF
Fatty Acid Amide Hydrolase
pdb|3PPM|B Chain B, Crystal Structure Of A Noncovalently Bound
Alpha-Ketoheterocycle Inhibitor
(PhenhexylOXADIAZOLEPYRIDINE) TO A HUMANIZED VARIANT OF
Fatty Acid Amide Hydrolase
pdb|3PR0|A Chain A, Crystal Structure Of A Covalently Bound
Alpha-Ketoheterocycle Inhibitor
(PhenhexylOXADIAZOLEPYRIDINE) TO A HUMANIZED VARIANT OF
Fatty Acid Amide Hydrolase
pdb|3PR0|B Chain B, Crystal Structure Of A Covalently Bound
Alpha-Ketoheterocycle Inhibitor
(PhenhexylOXADIAZOLEPYRIDINE) TO A HUMANIZED VARIANT OF
Fatty Acid Amide Hydrolase
Length = 573
Score = 31.2 bits (69), Expect = 0.23, Method: Composition-based stats.
Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Query: 31 TETDGSILCPSSSNSVVGLKPTLGLTSRAG----VIPITPRQDSVGPICRTV 78
T+ GSI PS+ + GLKPT S++G V T Q S+GP+ R V
Sbjct: 230 TDIGGSIRFPSAFCGICGLKPTGNRLSKSGLKGCVYGQTAVQLSLGPMARDV 281
>pdb|1O9Q|A Chain A, Crystal Structure Of The S155c Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1O9Q|B Chain B, Crystal Structure Of The S155c Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1OCH|A Chain A, Crystal Structure Of The S155c Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1OCH|B Chain B, Crystal Structure Of The S155c Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
Length = 414
Score = 30.4 bits (67), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 43/105 (40%), Gaps = 19/105 (18%)
Query: 27 VSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLD 86
++LGT+T G ++ P++ +KP+ + GV + D+VG D A L
Sbjct: 146 LALGTQTGGXVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLL 205
Query: 87 AIAGFDHYDPATRAASEYIPRGGYKQFLRPHGLKGKRLGIVRNPF 131
A+ G + S +P K R+G+VR F
Sbjct: 206 AMTGRSEF-------SGIVP------------AKAPRIGVVRQEF 231
>pdb|1OBJ|A Chain A, Crystal Structure Of The T150a Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1OBJ|B Chain B, Crystal Structure Of The T150a Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
Length = 414
Score = 30.4 bits (67), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 43/105 (40%), Gaps = 19/105 (18%)
Query: 27 VSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLD 86
++LG +T GS++ P++ +KP+ + GV + D+VG D A L
Sbjct: 146 LALGAQTGGSVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLL 205
Query: 87 AIAGFDHYDPATRAASEYIPRGGYKQFLRPHGLKGKRLGIVRNPF 131
A+ G + S +P K R+G+VR F
Sbjct: 206 AMTGRSEF-------SGIVP------------AKAPRIGVVRQEF 231
>pdb|1N6D|A Chain A, Tricorn Protease In Complex With Tetrapeptide Chloromethyl
Ketone Derivative
pdb|1N6D|B Chain B, Tricorn Protease In Complex With Tetrapeptide Chloromethyl
Ketone Derivative
pdb|1N6D|C Chain C, Tricorn Protease In Complex With Tetrapeptide Chloromethyl
Ketone Derivative
pdb|1N6D|D Chain D, Tricorn Protease In Complex With Tetrapeptide Chloromethyl
Ketone Derivative
pdb|1N6D|E Chain E, Tricorn Protease In Complex With Tetrapeptide Chloromethyl
Ketone Derivative
pdb|1N6D|F Chain F, Tricorn Protease In Complex With Tetrapeptide Chloromethyl
Ketone Derivative
pdb|1N6E|A Chain A, Tricorn Protease In Complex With A Tridecapeptide
Chloromethyl Ketone Derivative
pdb|1N6E|C Chain C, Tricorn Protease In Complex With A Tridecapeptide
Chloromethyl Ketone Derivative
pdb|1N6E|E Chain E, Tricorn Protease In Complex With A Tridecapeptide
Chloromethyl Ketone Derivative
pdb|1N6E|G Chain G, Tricorn Protease In Complex With A Tridecapeptide
Chloromethyl Ketone Derivative
pdb|1N6E|I Chain I, Tricorn Protease In Complex With A Tridecapeptide
Chloromethyl Ketone Derivative
pdb|1N6E|K Chain K, Tricorn Protease In Complex With A Tridecapeptide
Chloromethyl Ketone Derivative
pdb|1N6F|A Chain A, Tricorn Protease In Complex With Z-Phe-Diketo-Arg-Glu-Phe
pdb|1N6F|B Chain B, Tricorn Protease In Complex With Z-Phe-Diketo-Arg-Glu-Phe
pdb|1N6F|C Chain C, Tricorn Protease In Complex With Z-Phe-Diketo-Arg-Glu-Phe
pdb|1N6F|D Chain D, Tricorn Protease In Complex With Z-Phe-Diketo-Arg-Glu-Phe
pdb|1N6F|E Chain E, Tricorn Protease In Complex With Z-Phe-Diketo-Arg-Glu-Phe
pdb|1N6F|F Chain F, Tricorn Protease In Complex With Z-Phe-Diketo-Arg-Glu-Phe
Length = 1071
Score = 26.2 bits (56), Expect = 9.1, Method: Composition-based stats.
Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
Query: 33 TDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSV-GPICRTVADAAYVLDAIAGF 91
+DG I S S +GL +G + GV+ ITP++ + G + A + DA G
Sbjct: 965 SDGDIF--SFSFKKLGLGKLIGTRTWGGVVGITPKRRLIDGTVLTQPEFAFWFRDAGFGV 1022
Query: 92 DHYDPATRAASEYIP 106
++Y EY P
Sbjct: 1023 ENYGVDPDVEIEYAP 1037
>pdb|1K32|A Chain A, Crystal Structure Of The Tricorn Protease
pdb|1K32|B Chain B, Crystal Structure Of The Tricorn Protease
pdb|1K32|C Chain C, Crystal Structure Of The Tricorn Protease
pdb|1K32|D Chain D, Crystal Structure Of The Tricorn Protease
pdb|1K32|E Chain E, Crystal Structure Of The Tricorn Protease
pdb|1K32|F Chain F, Crystal Structure Of The Tricorn Protease
Length = 1045
Score = 25.8 bits (55), Expect = 9.3, Method: Composition-based stats.
Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
Query: 33 TDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSV-GPICRTVADAAYVLDAIAGF 91
+DG I S S +GL +G + GV+ ITP++ + G + A + DA G
Sbjct: 939 SDGDIF--SFSFKKLGLGKLIGTRTWGGVVGITPKRRLIDGTVLTQPEFAFWFRDAGFGV 996
Query: 92 DHYDPATRAASEYIP 106
++Y EY P
Sbjct: 997 ENYGVDPDVEIEYAP 1011
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.139 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,618,841
Number of Sequences: 62578
Number of extensions: 178477
Number of successful extensions: 338
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 310
Number of HSP's gapped (non-prelim): 29
length of query: 156
length of database: 14,973,337
effective HSP length: 91
effective length of query: 65
effective length of database: 9,278,739
effective search space: 603118035
effective search space used: 603118035
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)