Query 042017
Match_columns 156
No_of_seqs 118 out of 1215
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 22:46:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042017.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042017hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ip4_A Glutamyl-tRNA(Gln) amid 100.0 1.6E-49 5.6E-54 330.9 15.6 150 1-156 143-292 (485)
2 2gi3_A Glutamyl-tRNA(Gln) amid 100.0 1.1E-48 3.9E-53 325.2 13.9 149 1-156 131-279 (476)
3 3h0l_A Glutamyl-tRNA(Gln) amid 100.0 1.2E-48 4.3E-53 325.0 14.1 150 1-156 136-285 (478)
4 3a1k_A Amidase; AS family enzy 100.0 4.6E-49 1.6E-53 330.4 10.7 152 1-156 160-311 (521)
5 3kfu_E Glutamyl-tRNA(Gln) amid 100.0 3.7E-48 1.3E-52 321.5 15.4 148 1-156 130-277 (471)
6 1m22_A Peptide amidase, PAM; e 100.0 3.6E-48 1.2E-52 324.0 14.7 152 1-156 154-305 (503)
7 3a2q_A 6-aminohexanoate-cyclic 100.0 6.3E-48 2.2E-52 321.9 11.6 151 1-156 139-293 (493)
8 1o9p_A Malonamidase E2; malona 100.0 1.8E-46 6.3E-51 307.2 12.8 136 1-156 120-255 (414)
9 2dc0_A Probable amidase; struc 100.0 9.1E-47 3.1E-51 310.6 11.0 134 1-156 136-269 (434)
10 3ppm_A Fatty-acid amide hydrol 100.0 4E-46 1.4E-50 314.9 10.9 147 1-156 200-352 (573)
11 2hw2_A Rifampin ADP-ribosyl tr 38.3 72 0.0025 21.6 5.1 34 120-156 104-138 (143)
12 3pu6_A Uncharacterized protein 32.5 60 0.0021 22.1 4.2 32 123-154 109-144 (157)
13 1oeg_A Apolipoprotein E; siali 27.8 21 0.00071 17.1 0.8 17 138-154 4-20 (26)
14 1wj5_A Hypothetical protein (r 27.5 70 0.0024 21.0 3.5 21 135-155 71-91 (120)
15 2e85_A Hydrogenase 3 maturatio 27.0 49 0.0017 22.7 3.0 33 123-155 113-146 (159)
16 2vri_A Non-structural protein 26.2 13 0.00045 26.1 -0.2 16 35-50 121-136 (174)
17 3gqe_A Non-structural protein 23.3 19 0.00065 25.2 0.2 18 34-51 103-120 (168)
18 4hp8_A 2-deoxy-D-gluconate 3-d 20.8 44 0.0015 24.8 1.8 20 1-20 3-27 (247)
19 3ejg_A Non-structural protein 20.2 25 0.00085 25.3 0.3 16 35-50 142-157 (193)
20 1qys_A TOP7; alpha-beta, novel 20.2 76 0.0026 19.4 2.5 20 137-156 26-45 (106)
No 1
>3ip4_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, ATP-binding, nucleotide-bindi protein biosynthesis; 1.90A {Staphylococcus aureus subsp} SCOP: c.117.1.1 PDB: 2df4_A 2dqn_A* 2g5h_A 2g5i_A* 2f2a_A
Probab=100.00 E-value=1.6e-49 Score=330.90 Aligned_cols=150 Identities=34% Similarity=0.509 Sum_probs=135.5
Q ss_pred CCCCCCCCCCCCChHHHHHHhcCCCceeeeccCCCccchhhhcCCcceecCCCCCccCCCCCCCCCCCcccccccCCHHH
Q 042017 1 NPYVLSADPCGSSSGSAISVAANLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVAD 80 (156)
Q Consensus 1 Np~~~~~~~gGSS~Gsaaava~g~~~~aiGtD~gGSiR~PA~~~Gv~g~kpt~g~~s~~G~~~~~~~~d~~Gplar~v~D 80 (156)
||||+.|+|||||||||++||+|++++++|||||||||+||+||||||||||+||||+.|++|+++++|++|||||+|+|
T Consensus 143 NP~~~~~~pGGSSgGsAaaVAag~~~~alGtDtgGSIRiPAa~cGv~GlKPT~Grvs~~G~~p~~~sld~~Gp~aRsv~D 222 (485)
T 3ip4_A 143 NPFDHKAVPGGSSGGSAAAVAAGLVPLSLGSDTGGSIRQPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPLTRNVKD 222 (485)
T ss_dssp BTTBTTBCCCSSSHHHHHHHHTTSCSEEEEECSSSTTHHHHHHTTCEEEECCTTSBCCTTBCCSCTTTCCEEEEESSHHH
T ss_pred CccccCcCCCCCccHHHHHhhcCCCceeeeccCCcchhhhHHHhCCeeecCCCCcccCCCCCCcccccceeccccCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCcccccccccCCCCcccccccCCCCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHhCCC
Q 042017 81 AAYVLDAIAGFDHYDPATRAASEYIPRGGYKQFLRPHGLKGKRLGIVRNPFFNFDEGSPLAQVFDHHLHTLRLNYA 156 (156)
Q Consensus 81 ~~~~~~~l~g~d~~d~~s~~~~~~~p~~~~~~~~~~~~l~~lrIg~~~~~~~~~~~~~~v~~~~~~ai~~L~~~Ga 156 (156)
+++++++|.|+|+.|+.+.. .|...|...+. ..++++||||+++.++ ...+++++++++++++.|+++|+
T Consensus 223 ~a~~l~vl~g~d~~d~~~~~----~~~~~~~~~~~-~~~~~lrigv~~~~~~-~~~~~~v~~a~~~a~~~L~~~G~ 292 (485)
T 3ip4_A 223 NAIVLEAISGADVNDSTSAP----VDDVDFTSEIG-KDIKGLKVALPKEYLG-EGVADDVKEAVQNAVETLKSLGA 292 (485)
T ss_dssp HHHHHHHHBSCCTTCTTSCC----CCCCCCSTTTT-CCCTTCEEEEEGGGGS-TTSCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhcCCCcccccccc----cCccchhhhhc-cCccCcEEEEECCccc-CCCCHHHHHHHHHHHHHHHHCCC
Confidence 99999999999999987654 23334555443 4678999999876443 36899999999999999999985
No 2
>2gi3_A Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1272, structural genomics, joint center for structura genomics, JCSG; HET: MSE MPD; 1.80A {Thermotoga maritima} SCOP: c.117.1.1 PDB: 3al0_A*
Probab=100.00 E-value=1.1e-48 Score=325.17 Aligned_cols=149 Identities=34% Similarity=0.531 Sum_probs=133.5
Q ss_pred CCCCCCCCCCCCChHHHHHHhcCCCceeeeccCCCccchhhhcCCcceecCCCCCccCCCCCCCCCCCcccccccCCHHH
Q 042017 1 NPYVLSADPCGSSSGSAISVAANLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVAD 80 (156)
Q Consensus 1 Np~~~~~~~gGSS~Gsaaava~g~~~~aiGtD~gGSiR~PA~~~Gv~g~kpt~g~~s~~G~~~~~~~~d~~Gplar~v~D 80 (156)
||||+.|+|||||||||++||+|++++++|||||||||+||+||||||||||+||||+.|++|+++++|++|||||+|+|
T Consensus 131 NP~~~~~~pGGSSgGsAaAVAag~~~~alGtDtgGSIRiPAa~cGv~GlKPT~G~vs~~G~~p~~~sld~~Gp~arsv~D 210 (476)
T 2gi3_A 131 NPWDLERVPGGSSGGSAAAVSAGMVVAALGSDTGGSVRQPASLCGVVGYKPTYGLVSRYGLVAFASSLDQIGPITKTVRD 210 (476)
T ss_dssp BTTBTTBCCCSSSHHHHHHHHTTSSSEEEEEESSSTTHHHHHHHTSEEEECCTTSBCCTTBCCSCTTTCEEEEEESSHHH
T ss_pred CCCCCCCCCCcchHHHHHHHHcCCCceEeecCCCchhhhhHHHcCCeEEeCCCCcCCCCCCCCcccCCCeeeeeeCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCcccccccccCCCCcccccccCCCCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHhCCC
Q 042017 81 AAYVLDAIAGFDHYDPATRAASEYIPRGGYKQFLRPHGLKGKRLGIVRNPFFNFDEGSPLAQVFDHHLHTLRLNYA 156 (156)
Q Consensus 81 ~~~~~~~l~g~d~~d~~s~~~~~~~p~~~~~~~~~~~~l~~lrIg~~~~~~~~~~~~~~v~~~~~~ai~~L~~~Ga 156 (156)
+++++++|.|+|+.|+.+.. .|. .|...+. ..++++||||+++.+. ...+++++++++++++.|+++|+
T Consensus 211 ~a~~l~~l~g~d~~d~~~~~----~p~-~~~~~~~-~~~~~lrig~~~~~~~-~~~~~~v~~a~~~a~~~L~~~G~ 279 (476)
T 2gi3_A 211 AAILMEIISGRDENDATTVN----RKV-DFLSEIE-EGVSGMKFAVPEEIYE-HDIEEGVSERFEEALKLLERLGA 279 (476)
T ss_dssp HHHHHHHHBSCBTTBTTCCS----CCC-CSSTTTT-SCCTTCEEEEEGGGGG-SCCCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhhCCCCCCccccC----CCc-chhhhhh-cCCCCCEEEEECcccc-CCCCHHHHHHHHHHHHHHHHCCC
Confidence 99999999999998876643 222 3444433 3568899999876443 36789999999999999999985
No 3
>3h0l_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_A 3h0r_A*
Probab=100.00 E-value=1.2e-48 Score=324.97 Aligned_cols=150 Identities=34% Similarity=0.555 Sum_probs=135.2
Q ss_pred CCCCCCCCCCCCChHHHHHHhcCCCceeeeccCCCccchhhhcCCcceecCCCCCccCCCCCCCCCCCcccccccCCHHH
Q 042017 1 NPYVLSADPCGSSSGSAISVAANLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVAD 80 (156)
Q Consensus 1 Np~~~~~~~gGSS~Gsaaava~g~~~~aiGtD~gGSiR~PA~~~Gv~g~kpt~g~~s~~G~~~~~~~~d~~Gplar~v~D 80 (156)
||||+.|+|||||||||++||+|++++++|||||||||+||+||||||||||+||+|+.|++++++++|++|||+|+|+|
T Consensus 136 NP~~~~~~~GGSSgGsaaaVAag~~~~a~GtDtgGSiR~PAa~cGv~GlKPT~G~v~~~g~~~~~~~~d~~Gp~arsv~D 215 (478)
T 3h0l_A 136 NPWDLERVPGGSSGGSAASVAVLSAPVSLGSDTGGSIRQPASFCGVIGIKPTYGRVSRYGLVAFASSLDQIGVFGRRTED 215 (478)
T ss_dssp CTTCTTBCCCSSSHHHHHHHHHTSSSCEEEECSSSTTHHHHHHHTCEEEECCTTSBCCTTBCCSCTTTCCEEEEESSHHH
T ss_pred CCccCCCCCCcchHHHHHHHHCCCCceeeecCCCCcchhhhHHhCCeeEeCCCCcccCCCCCCCccCCCeecceeCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCcccccccccCCCCcccccccCCCCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHhCCC
Q 042017 81 AAYVLDAIAGFDHYDPATRAASEYIPRGGYKQFLRPHGLKGKRLGIVRNPFFNFDEGSPLAQVFDHHLHTLRLNYA 156 (156)
Q Consensus 81 ~~~~~~~l~g~d~~d~~s~~~~~~~p~~~~~~~~~~~~l~~lrIg~~~~~~~~~~~~~~v~~~~~~ai~~L~~~Ga 156 (156)
+++++++|.|+|+.|+.+.. .|...|...+. ..++++||||+++.++ ...+++++++++++++.|+++|+
T Consensus 216 ~a~~l~vl~g~d~~d~~~~~----~p~~~~~~~~~-~~~~~lrIgv~~~~~~-~~~~p~v~~a~~~a~~~L~~~G~ 285 (478)
T 3h0l_A 216 VALVLEVISGWDEKDSTSAK----VPVPEWSEEVK-KEVKGLKIGLPKEFFE-YELQPQVKEAFENFIKELEKEGF 285 (478)
T ss_dssp HHHHHHHHBSCCTTCTTSCC----CCCCCHHHHTT-CCCTTCEEEEEGGGGG-SCCCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhcCCCcccccccc----cCccchhhhhc-cCCCCCEEEEECCccc-CCCCHHHHHHHHHHHHHHHHCCC
Confidence 99999999999999987653 23334544443 4678999999876443 36899999999999999999985
No 4
>3a1k_A Amidase; AS family enzyme, hydrolase; 2.17A {Rhodococcus SP} PDB: 3a1i_A
Probab=100.00 E-value=4.6e-49 Score=330.43 Aligned_cols=152 Identities=36% Similarity=0.511 Sum_probs=134.7
Q ss_pred CCCCCCCCCCCCChHHHHHHhcCCCceeeeccCCCccchhhhcCCcceecCCCCCccCCCCCCCCCCCcccccccCCHHH
Q 042017 1 NPYVLSADPCGSSSGSAISVAANLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVAD 80 (156)
Q Consensus 1 Np~~~~~~~gGSS~Gsaaava~g~~~~aiGtD~gGSiR~PA~~~Gv~g~kpt~g~~s~~G~~~~~~~~d~~Gplar~v~D 80 (156)
||||+.|+|||||||||++||+|++++++|||||||||+||+||||||||||+||||++|++|+++++|++|||||+|+|
T Consensus 160 NP~~~~~~pGGSSgGSAAAVAag~~~~alGtDtgGSIR~PAa~cGvvGlKPT~Grvs~~G~~p~~~sld~~Gp~aRsv~D 239 (521)
T 3a1k_A 160 NPWDRQREAGGSSGGSAALVANGDVDFAIGGDQGGSIRIPAAFCGVVGHKPTFGLVPYTGAFPIERTIDHLGPITRTVHD 239 (521)
T ss_dssp ETTEEEEECCSSSHHHHHHHHTTSSSEEEEEESSSTTHHHHHHHTSEEEECSTTTSCCTTBCCSCGGGCEEEEEESSHHH
T ss_pred CCCCCCCCCCCCCchHHHHHhcCCcceecccCCCCCCCcChHHcCCeeEecCCCcCCCCCCCCcccccCeeCceeCcHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCcccccccccCCCCcccccccCCCCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHhCCC
Q 042017 81 AAYVLDAIAGFDHYDPATRAASEYIPRGGYKQFLRPHGLKGKRLGIVRNPFFNFDEGSPLAQVFDHHLHTLRLNYA 156 (156)
Q Consensus 81 ~~~~~~~l~g~d~~d~~s~~~~~~~p~~~~~~~~~~~~l~~lrIg~~~~~~~~~~~~~~v~~~~~~ai~~L~~~Ga 156 (156)
+++++++|.|+|+.|+.+... .|..+|...+. ..++++||||+++.+.....+++++++++++++.|+++|+
T Consensus 240 ~a~~l~vlag~d~~D~~~~~~---~~~~~~~~~l~-~~~~~lrIgv~~~~~~~~~~~~~v~~a~~~a~~~L~~~Ga 311 (521)
T 3a1k_A 240 AALMLSVIAGRDGNDPRQADS---VEAGDYLSTLD-SDVDGLRIGIVREGFGHAVSQPEVDDAVRAAAHSLTEIGC 311 (521)
T ss_dssp HHHHHHHHCSCCSSCTTSCTT---CCCCCSSTTTT-SCCTTCEEEEEGGGSCCSSSCHHHHHHHHHHHHGGGGGTC
T ss_pred HHHHHHHHhCCCCCCcccccc---CCCcchhhhhc-cCccCcEEEEECccccccCCCHHHHHHHHHHHHHHHHCCC
Confidence 999999999999998765211 22234555543 4578999999876443335789999999999999999986
No 5
>3kfu_E Glutamyl-tRNA(Gln) amidotransferase subunit A; ASPRS, gatcab, ATP-binding, aminoacyl-tRNA synthetase, ligas nucleotide-binding, protein biosynthesis, ligase-RNA comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus}
Probab=100.00 E-value=3.7e-48 Score=321.55 Aligned_cols=148 Identities=36% Similarity=0.556 Sum_probs=134.1
Q ss_pred CCCCCCCCCCCCChHHHHHHhcCCCceeeeccCCCccchhhhcCCcceecCCCCCccCCCCCCCCCCCcccccccCCHHH
Q 042017 1 NPYVLSADPCGSSSGSAISVAANLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVAD 80 (156)
Q Consensus 1 Np~~~~~~~gGSS~Gsaaava~g~~~~aiGtD~gGSiR~PA~~~Gv~g~kpt~g~~s~~G~~~~~~~~d~~Gplar~v~D 80 (156)
||||+.++|||||||||++||+|++++++|||||||||+||+||||||||||+||+|+.|++++++++|++|||+|+|+|
T Consensus 130 NP~~~~~~~GGSSgGsaaaVAag~~~~a~GtDtgGSiR~PAa~cGv~GlKPT~G~v~~~g~~~~~~~~d~~Gp~arsv~D 209 (471)
T 3kfu_E 130 NPFDPDRVPGGSSGGSAAALAADLAPLALGSDTGGSVRQPAAFCGVYGLKPTYGRVSRFGLIAYASSLDQIGPMARSVRD 209 (471)
T ss_dssp BTTBTTBCCCSSSHHHHHHHHTTSCSEEEEEESSSTTHHHHHHTTCEEEECCTTSSCCTTBCCSCTTTCEEEEEESSHHH
T ss_pred CCCccCcCCCCCcHHHHHHHHCCCCccccccCCCCccccChhhcCceeeeCCCCCccCCCCCCcccccCeecceeCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCcccccccccCCCCcccccccCCCCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHhCCC
Q 042017 81 AAYVLDAIAGFDHYDPATRAASEYIPRGGYKQFLRPHGLKGKRLGIVRNPFFNFDEGSPLAQVFDHHLHTLRLNYA 156 (156)
Q Consensus 81 ~~~~~~~l~g~d~~d~~s~~~~~~~p~~~~~~~~~~~~l~~lrIg~~~~~~~~~~~~~~v~~~~~~ai~~L~~~Ga 156 (156)
+++++++|.|+|+.|+.+.. .| ..|...+. ..++++||||+++.+ ...+++++++++++++.|+++|+
T Consensus 210 ~a~~~~~l~g~d~~d~~~~~----~~-~~~~~~~~-~~~~~lrIgv~~~~~--~~~~p~v~~a~~~a~~~L~~~G~ 277 (471)
T 3kfu_E 210 LALLMDAAAGPDPLDATSLD----LP-PRFQEALE-GPLPPLRLGVVREAL--AGNSPGVERALEEALKVFRELGL 277 (471)
T ss_dssp HHHHHHHHCSCCTTCTTCCC----CC-CCTTCCSC-CCCSSCEEEEEGGGT--TTCCHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHhcCCCcccccccC----CC-cchhhhhc-cCCCCCEEEEECCcc--CCCCHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999987643 22 23444433 357899999988754 47899999999999999999985
No 6
>1m22_A Peptide amidase, PAM; eleven-stranded beta sheet, covered double layers of alpha helices on TOP and bottom, hydrolase; HET: EPE; 1.40A {Stenotrophomonas maltophilia} SCOP: c.117.1.1 PDB: 1m21_A*
Probab=100.00 E-value=3.6e-48 Score=324.00 Aligned_cols=152 Identities=53% Similarity=0.830 Sum_probs=133.8
Q ss_pred CCCCCCCCCCCCChHHHHHHhcCCCceeeeccCCCccchhhhcCCcceecCCCCCccCCCCCCCCCCCcccccccCCHHH
Q 042017 1 NPYVLSADPCGSSSGSAISVAANLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVAD 80 (156)
Q Consensus 1 Np~~~~~~~gGSS~Gsaaava~g~~~~aiGtD~gGSiR~PA~~~Gv~g~kpt~g~~s~~G~~~~~~~~d~~Gplar~v~D 80 (156)
||||+.|+|||||||||++||+|++++++|||||||||+||+||||||||||+||||+.|++|+++++|++|||||+|+|
T Consensus 154 NP~~~~~~pGGSSgGsAaAVAag~~~~alGtDtgGSIRiPAa~cGvvGlKPT~Grvs~~G~~p~~~sld~~Gp~arsv~D 233 (503)
T 1m22_A 154 NPYRISHSPCGSSSGSAVAVAANLASVAIGTETDGSIVCPAAINGVVGLKPTVGLVSRDGIIPISFSQDTAGPMARSVAD 233 (503)
T ss_dssp CTTSTTBCCCSSSHHHHHHHHTTSSSEEEEEESSSTTHHHHHHTTSEEEECCTTSSCCTTBCCSCTTTCEEEEEESSHHH
T ss_pred CCCCCCCCCCccHHHHHHHHHcCCCceeeecCCCchhhhhHHHhCceEEECCCCCcCCCCcCCccCCCCeeCcccCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCcccccccccCCCCcccccccCCCCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHhCCC
Q 042017 81 AAYVLDAIAGFDHYDPATRAASEYIPRGGYKQFLRPHGLKGKRLGIVRNPFFNFDEGSPLAQVFDHHLHTLRLNYA 156 (156)
Q Consensus 81 ~~~~~~~l~g~d~~d~~s~~~~~~~p~~~~~~~~~~~~l~~lrIg~~~~~~~~~~~~~~v~~~~~~ai~~L~~~Ga 156 (156)
+++++++|.|+|+.|+.+...+.. +...|...+....++++||||+++++ . .+++++++++++++.|+++|+
T Consensus 234 ~a~~l~vl~g~d~~d~~~~~~~~~-~~~~~~~~~~~~~~~~lrIgv~~~~~-~--~~~~v~~a~~~a~~~L~~~G~ 305 (503)
T 1m22_A 234 AAAVLTAIAGRDDADPATATMPGR-AVYDYTARLDPQGLRGKRIGLLQTPL-L--KYRGMPPLIEQAATELRRAGA 305 (503)
T ss_dssp HHHHHHHHCCCCTTCGGGGGCTTC-CCCCGGGGCCTTTTTTCEEEEECSGG-G--GSTTHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCCCCCccccccccc-cccchhhhccccCCCCCEEEEECccc-c--CCHHHHHHHHHHHHHHHHcCC
Confidence 999999999999999876543210 11235544433357889999987643 2 678999999999999999985
No 7
>3a2q_A 6-aminohexanoate-cyclic-dimer hydrolase; alpha/beta fold, nylon degradation; 1.80A {Arthrobacter SP} PDB: 3a2p_A
Probab=100.00 E-value=6.3e-48 Score=321.89 Aligned_cols=151 Identities=28% Similarity=0.325 Sum_probs=132.8
Q ss_pred CCCCCCCCCCCCChHHHHHHhcCCCceeeeccCCCccchhhhcCCcceecCCCCCccCCCC--C-CCCCCCcccccccCC
Q 042017 1 NPYVLSADPCGSSSGSAISVAANLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGV--I-PITPRQDSVGPICRT 77 (156)
Q Consensus 1 Np~~~~~~~gGSS~Gsaaava~g~~~~aiGtD~gGSiR~PA~~~Gv~g~kpt~g~~s~~G~--~-~~~~~~d~~Gplar~ 77 (156)
||||+.|+|||||||||++||+|++++++|||||||||+||+||||||||||+||||+.|+ . ++++++|++|||||+
T Consensus 139 NP~~~~~~pGGSSgGsAAAVAaG~~~~alGtDtgGSIRiPAa~cGv~GlKPT~Grvs~~g~~~~~~~~~sld~~Gp~ars 218 (493)
T 3a2q_A 139 NPWNLGRSVGGSSGGSGAAVAAALSPVAHGNDAAGAVRIPASVCGVVGLKPTRGRISPGPLVTDSDNVAGAAHEGLFARS 218 (493)
T ss_dssp BTTBTTBCCCSSSHHHHHHHHTTSCSEEEEEESSSTTHHHHHHHTSEEEECSTTSBCCCSSCCHHHHHHTTCEEEEEESS
T ss_pred CCCCCCCCCCcCcHHHHHHHHcCCCceeeecCCCcccccchhhcCcceEEcCCCccCCCCCcccccccccCceecCccCC
Confidence 9999999999999999999999999999999999999999999999999999999999998 5 777889999999999
Q ss_pred HHHHHHHHHHHhCCCCCCcccccccccCCCCcccccccCCCCCCCEEEEeCCCCC-CCCCCHHHHHHHHHHHHHHHhCCC
Q 042017 78 VADAAYVLDAIAGFDHYDPATRAASEYIPRGGYKQFLRPHGLKGKRLGIVRNPFF-NFDEGSPLAQVFDHHLHTLRLNYA 156 (156)
Q Consensus 78 v~D~~~~~~~l~g~d~~d~~s~~~~~~~p~~~~~~~~~~~~l~~lrIg~~~~~~~-~~~~~~~v~~~~~~ai~~L~~~Ga 156 (156)
|+|+++++++|.|+|++|+.+.. .|..+|..... ..++++||||+.++++ ....+++++++++++++.|+++|+
T Consensus 219 v~D~a~~l~~l~g~d~~d~~~~~----~p~~~~~~~~~-~~~~~lrIgv~~~~~~~~~~~~~~v~~a~~~a~~~L~~~G~ 293 (493)
T 3a2q_A 219 VRDIAALLDVVSGHRPGDTFCAP----TASRPYAQGIS-ENPGSLRVGVLTHNPVGDFALDPECAAAARGAAAALAALGH 293 (493)
T ss_dssp HHHHHHHHHHHBSCCTTCSCCCC----CCSSCHHHHTT-SCCCSCEEEECCSCTTCSSCCCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcCCCCCCccccc----CCCcchhhhcc-cCCCCCEEEEECCccccCCCCCHHHHHHHHHHHHHHHHCCC
Confidence 99999999999999999976543 22233544332 3468899999887653 346799999999999999999985
No 8
>1o9p_A Malonamidase E2; malonate; 1.8A {Bradyrhizobium japonicum} SCOP: c.117.1.1 PDB: 1o9o_A 1obl_A 1och_A 1obk_A 1obi_A 1o9q_A* 1obj_A 1o9n_A 1ock_A 1ocl_A 1ocm_A
Probab=100.00 E-value=1.8e-46 Score=307.21 Aligned_cols=136 Identities=28% Similarity=0.346 Sum_probs=124.3
Q ss_pred CCCCCCCCCCCCChHHHHHHhcCCCceeeeccCCCccchhhhcCCcceecCCCCCccCCCCCCCCCCCcccccccCCHHH
Q 042017 1 NPYVLSADPCGSSSGSAISVAANLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVAD 80 (156)
Q Consensus 1 Np~~~~~~~gGSS~Gsaaava~g~~~~aiGtD~gGSiR~PA~~~Gv~g~kpt~g~~s~~G~~~~~~~~d~~Gplar~v~D 80 (156)
||||+.|+|||||||||++||+|++++++|||||||||+||+||||||||||+||+|+.|++|+++++|++|||||+|+|
T Consensus 120 NP~~~~~~pGGSSgGsAaaVAag~~~~alGtDtgGSIRiPAa~cGv~GlKPT~G~vs~~G~~~~~~s~d~~Gp~arsv~D 199 (414)
T 1o9p_A 120 NPHNTGHSPGGASSGSAAAVGAGMIPLALGTQTGGSVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAED 199 (414)
T ss_dssp BTTBTTBCCCSSSHHHHHHHHTTSCSEEEEEESSSTTHHHHHHHTCEEEECSTTSSCCTTBCCSCTTTCEEEEEESSHHH
T ss_pred CCCCCCCCCCcchHHHHHHHHcCCCceEEeeCCchhhhHhHHHhCCeeEECCCCCCCCCCCCCCCCccCeeccccCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCcccccccccCCCCcccccccCCCCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHhCCC
Q 042017 81 AAYVLDAIAGFDHYDPATRAASEYIPRGGYKQFLRPHGLKGKRLGIVRNPFFNFDEGSPLAQVFDHHLHTLRLNYA 156 (156)
Q Consensus 81 ~~~~~~~l~g~d~~d~~s~~~~~~~p~~~~~~~~~~~~l~~lrIg~~~~~~~~~~~~~~v~~~~~~ai~~L~~~Ga 156 (156)
+++++++|.+++ ++ .+ ...++++||||++++++. ..+++++++++++++.|+++|+
T Consensus 200 ~a~~~~~l~g~~--~~--------~~---------~~~~~~lrig~~~~~~~~-~~~~~v~~a~~~a~~~L~~~G~ 255 (414)
T 1o9p_A 200 LARGLLAMTGRS--EF--------SG---------IVPAKAPRIGVVRQEFAG-AVEPAAEQGLQAAIKAAERAGA 255 (414)
T ss_dssp HHHHHHHHHCCG--GG--------SS---------CCCCSSCEEEECCCGGGC-CCCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhcCCC--cc--------cc---------ccCCCCCEEEEECccccC-CCCHHHHHHHHHHHHHHHHCCC
Confidence 999999999975 11 00 123578999998876654 6799999999999999999985
No 9
>2dc0_A Probable amidase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Thermus thermophilus}
Probab=100.00 E-value=9.1e-47 Score=310.64 Aligned_cols=134 Identities=34% Similarity=0.499 Sum_probs=124.4
Q ss_pred CCCCCCCCCCCCChHHHHHHhcCCCceeeeccCCCccchhhhcCCcceecCCCCCccCCCCCCCCCCCcccccccCCHHH
Q 042017 1 NPYVLSADPCGSSSGSAISVAANLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVAD 80 (156)
Q Consensus 1 Np~~~~~~~gGSS~Gsaaava~g~~~~aiGtD~gGSiR~PA~~~Gv~g~kpt~g~~s~~G~~~~~~~~d~~Gplar~v~D 80 (156)
||||+.|+|||||||||++||+|++++++|||||||||+||+||||||||||+||+|+.|++|+++++|++|||||+|+|
T Consensus 136 NP~~~~~~pGGSSgGsAaaVAag~~~~alGtDtgGSIRiPAa~cGv~GlKPT~G~vs~~g~~~~~~s~d~~Gp~arsv~D 215 (434)
T 2dc0_A 136 NAVDPSRQAGGSSGGSAVAVALGIGLASLGTDTGGSIRIPAGFNGVVGFKPSYGRVSLEGALPLSRSTDHAGPLTRSVRD 215 (434)
T ss_dssp CSSCTTBBCCSSSHHHHHHHHHTSSSCEEEECSSSTTHHHHHHHTCEEEECSTTSSCCTTSCCSCTTTCCEEEEESSHHH
T ss_pred CCCCCCCCCcccHHHHHHHHHcCCCceeeecCCChhhhhhHHhCCCEEEECCCCCCCCCCCCCCCCccCeeCcccCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCcccccccccCCCCcccccccCCCCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHhCCC
Q 042017 81 AAYVLDAIAGFDHYDPATRAASEYIPRGGYKQFLRPHGLKGKRLGIVRNPFFNFDEGSPLAQVFDHHLHTLRLNYA 156 (156)
Q Consensus 81 ~~~~~~~l~g~d~~d~~s~~~~~~~p~~~~~~~~~~~~l~~lrIg~~~~~~~~~~~~~~v~~~~~~ai~~L~~~Ga 156 (156)
+++++++|.++ +.|+. .++++||||++++++. ..+++++++++++++.|+++|+
T Consensus 216 ~a~~l~~l~g~-~~d~~--------------------~~~~lrig~~~~~~~~-~~~~~v~~a~~~a~~~L~~~G~ 269 (434)
T 2dc0_A 216 AHFLTEILAGE-SIPLE--------------------GVQNPVFGVPLDFLEG-RLGVEVRKAFTRLLEDLPALRA 269 (434)
T ss_dssp HHHHHHHHHTS-CCCCC--------------------CCCSCEEEECHHHHTT-CSCHHHHHHHHHHHHHTTTTTC
T ss_pred HHHHHHHHhCC-CCCcc--------------------cccCCEEEEECccccC-CCCHHHHHHHHHHHHHHHHCCC
Confidence 99999999998 65531 2477999998765544 6789999999999999999985
No 10
>3ppm_A Fatty-acid amide hydrolase 1; protein-inhibitor complex, FAAH, oxazole, oxadiazole, endoca degradation, membrane protein; HET: JG1 1DO; 1.78A {Rattus norvegicus} PDB: 2wj2_A* 3k7f_A* 3k83_A* 3k84_A* 3lj6_A* 3lj7_A 3oj8_A* 2wj1_A* 3pr0_A* 2wap_A* 1mt5_A* 2vya_A* 3qk5_A* 3qj8_A* 3qj9_A* 3qkv_A*
Probab=100.00 E-value=4e-46 Score=314.88 Aligned_cols=147 Identities=26% Similarity=0.353 Sum_probs=128.6
Q ss_pred CCCCCCCCCCCCChHHHHHHhcCCCceeeeccCCCccchhhhcCCcceecCCCCCccCCCCCCCCCC----CcccccccC
Q 042017 1 NPYVLSADPCGSSSGSAISVAANLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPR----QDSVGPICR 76 (156)
Q Consensus 1 Np~~~~~~~gGSS~Gsaaava~g~~~~aiGtD~gGSiR~PA~~~Gv~g~kpt~g~~s~~G~~~~~~~----~d~~Gplar 76 (156)
||||+.++|||||||||++||+|++++|+|||||||||+||+||||||||||+||+|+.|+++++++ +|++|||||
T Consensus 200 NP~~~~~~~GGSSgGsaaaVAag~~~~alGtDtgGSIRiPAa~cGv~GlKPT~Grvs~~G~~~~~~~~~~~~~~~Gp~ar 279 (573)
T 3ppm_A 200 NPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGGSIRFPSAFCGICGLKPTGNRLSKSGLKGCVYGQTAVQLSLGPMAR 279 (573)
T ss_dssp CTTCTTBCCCSSSHHHHHHHHTTSCSEEEEEESSSTTHHHHHHHTCEEEECCGGGSCCTTBCCSCCSCCSSCCEEEEEES
T ss_pred CCCCCCCCCCCCCchHHHHHHcCCCcEEEecCCCcchhhhhHHhCeeEEeCCCCcccCCCCCCcccccCcccccccceeC
Confidence 9999999999999999999999999999999999999999999999999999999999999998876 789999999
Q ss_pred CHHHHHHHHHHHhCCCC--CCcccccccccCCCCcccccccCCCCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHhC
Q 042017 77 TVADAAYVLDAIAGFDH--YDPATRAASEYIPRGGYKQFLRPHGLKGKRLGIVRNPFFNFDEGSPLAQVFDHHLHTLRLN 154 (156)
Q Consensus 77 ~v~D~~~~~~~l~g~d~--~d~~s~~~~~~~p~~~~~~~~~~~~l~~lrIg~~~~~~~~~~~~~~v~~~~~~ai~~L~~~ 154 (156)
+|+|+++++++|.+.|+ .|+.. ++.+|..... ..++++||||++++++. ..+|+++++++++++.|+++
T Consensus 280 sv~D~a~~l~~l~~~d~~~~d~~~-------~~~~~~~~~~-~~~~~lrigv~~~~~~~-~~~p~v~~a~~~a~~~L~~~ 350 (573)
T 3ppm_A 280 DVESLALCLKALLCEHLFTLDPTV-------PPLPFREEVY-RSSRPLRVGYYETDNYT-MPSPAMRRALIETKQRLEAA 350 (573)
T ss_dssp SHHHHHHHHHHHSSHHHHHHCTTS-------CCCCCCHHHH-TCCCCCEEEECSCCSSS-CCCHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHhcccccccCCCC-------Cccccchhhc-ccCCCCEEEEEcccCCC-CCCHHHHHHHHHHHHHHHHC
Confidence 99999999999999874 34432 1123443322 34688999998876665 56899999999999999999
Q ss_pred CC
Q 042017 155 YA 156 (156)
Q Consensus 155 Ga 156 (156)
|+
T Consensus 351 G~ 352 (573)
T 3ppm_A 351 GH 352 (573)
T ss_dssp TC
T ss_pred CC
Confidence 85
No 11
>2hw2_A Rifampin ADP-ribosyl transferase; protein-antibiotic complex, ADP-ribosylation; HET: RFP; 1.45A {Mycobacterium smegmatis}
Probab=38.28 E-value=72 Score=21.64 Aligned_cols=34 Identities=12% Similarity=0.117 Sum_probs=25.4
Q ss_pred CCCEE-EEeCCCCCCCCCCHHHHHHHHHHHHHHHhCCC
Q 042017 120 KGKRL-GIVRNPFFNFDEGSPLAQVFDHHLHTLRLNYA 156 (156)
Q Consensus 120 ~~lrI-g~~~~~~~~~~~~~~v~~~~~~ai~~L~~~Ga 156 (156)
.++|| |-+ .+|. ..+||..+.|+.-++.|+++|.
T Consensus 104 ~PLrIvgEv-~~W~--~h~pE~lq~mr~~La~l~~~g~ 138 (143)
T 2hw2_A 104 EPVWIVGEL-TDWV--GHPPEQLAAMRQGLEELRRKGL 138 (143)
T ss_dssp SCEEEEEEE-CCCC--CCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCcEEEEEe-cccC--CCCHHHHHHHHHHHHHHHhccc
Confidence 46764 444 4454 4579999999999999999873
No 12
>3pu6_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.60A {Wolinella succinogenes}
Probab=32.49 E-value=60 Score=22.15 Aligned_cols=32 Identities=16% Similarity=-0.043 Sum_probs=23.6
Q ss_pred EEEEeCC----CCCCCCCCHHHHHHHHHHHHHHHhC
Q 042017 123 RLGIVRN----PFFNFDEGSPLAQVFDHHLHTLRLN 154 (156)
Q Consensus 123 rIg~~~~----~~~~~~~~~~v~~~~~~ai~~L~~~ 154 (156)
-||+-.. ..+....+++++++++++++.+++.
T Consensus 109 liGiep~~~~~~~~g~~LS~~V~~av~~a~~~i~~~ 144 (157)
T 3pu6_A 109 FLGISVLLENVLHFSEGLSQGASDSAFVALGRIKEL 144 (157)
T ss_dssp EEEEEECGGGGSSCBCSCCHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEeecCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 4677444 2233578999999999999998763
No 13
>1oeg_A Apolipoprotein E; sialic acid, heparin-binding, repeat, signal, disease mutation, polymorphism; NMR {Homo sapiens} SCOP: j.39.1.1
Probab=27.79 E-value=21 Score=17.10 Aligned_cols=17 Identities=0% Similarity=0.124 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHhC
Q 042017 138 SPLAQVFDHHLHTLRLN 154 (156)
Q Consensus 138 ~~v~~~~~~ai~~L~~~ 154 (156)
+.+++.|+..++++++.
T Consensus 4 e~mr~Q~~~lveKvq~a 20 (26)
T 1oeg_A 4 EDMQRQWAGLVEKVQAA 20 (26)
T ss_dssp HHTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 46788899999988864
No 14
>1wj5_A Hypothetical protein (riken cDNA 0610009H20); winged helix, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.4.5.59
Probab=27.55 E-value=70 Score=21.04 Aligned_cols=21 Identities=19% Similarity=0.221 Sum_probs=18.7
Q ss_pred CCCHHHHHHHHHHHHHHHhCC
Q 042017 135 DEGSPLAQVFDHHLHTLRLNY 155 (156)
Q Consensus 135 ~~~~~v~~~~~~ai~~L~~~G 155 (156)
..+..++..|++||+.|++.|
T Consensus 71 stSk~i~sifKeAi~~Lqe~G 91 (120)
T 1wj5_A 71 GTSGVAQRVFKNALQLLQEKG 91 (120)
T ss_dssp SSCHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHHCC
Confidence 457889999999999999987
No 15
>2e85_A Hydrogenase 3 maturation protease; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.70A {Escherichia coli} PDB: 2i8l_A
Probab=27.03 E-value=49 Score=22.65 Aligned_cols=33 Identities=18% Similarity=0.224 Sum_probs=23.5
Q ss_pred EEEEeCCCC-CCCCCCHHHHHHHHHHHHHHHhCC
Q 042017 123 RLGIVRNPF-FNFDEGSPLAQVFDHHLHTLRLNY 155 (156)
Q Consensus 123 rIg~~~~~~-~~~~~~~~v~~~~~~ai~~L~~~G 155 (156)
-||+-.... +....+++++++++++++.|++.+
T Consensus 113 liGi~p~~~~~g~~LS~~v~~av~~a~~~l~~~~ 146 (159)
T 2e85_A 113 FLGIQPDIVGFYYPMTQPIKDAVETVYQRLEGWE 146 (159)
T ss_dssp EEEECCSCCCTTCCCCHHHHHHHHHHHTTSTTCC
T ss_pred EEEEEEeEcCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 466644322 334789999999999999887654
No 16
>2vri_A Non-structural protein 3; RNA replication, nucleotide-binding, endonuclease, macro domain, viral protein, ATP-binding, exonuclease; 1.8A {Human coronavirus NL63}
Probab=26.23 E-value=13 Score=26.10 Aligned_cols=16 Identities=31% Similarity=0.497 Sum_probs=14.3
Q ss_pred CccchhhhcCCcceec
Q 042017 35 GSILCPSSSNSVVGLK 50 (156)
Q Consensus 35 GSiR~PA~~~Gv~g~k 50 (156)
+||-+|+--||+|||.
T Consensus 121 ~SIAfP~IstG~~g~p 136 (174)
T 2vri_A 121 GIPLMPLLSCGIFGVR 136 (174)
T ss_dssp SCEEEECSSCGGGCCC
T ss_pred CcEEeCccccCCCCCC
Confidence 5999999999999874
No 17
>3gqe_A Non-structural protein 3; macro domain, X domain, venezuelan equine encephalitis virus alphavirus; HET: BCN; 2.30A {Venezuelan equine encephalitis virus} PDB: 3gqo_A*
Probab=23.25 E-value=19 Score=25.20 Aligned_cols=18 Identities=17% Similarity=0.095 Sum_probs=15.4
Q ss_pred CCccchhhhcCCcceecC
Q 042017 34 DGSILCPSSSNSVVGLKP 51 (156)
Q Consensus 34 gGSiR~PA~~~Gv~g~kp 51 (156)
--||-+|+-.||+|||-+
T Consensus 103 ~~SIAfP~IstG~~g~p~ 120 (168)
T 3gqe_A 103 YKSVAIPLLSTGIFSGNK 120 (168)
T ss_dssp CSEEEEECTTSSTTSCSS
T ss_pred CCEEEECCcccCCCCCCH
Confidence 369999999999998864
No 18
>4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens}
Probab=20.81 E-value=44 Score=24.75 Aligned_cols=20 Identities=35% Similarity=0.579 Sum_probs=13.9
Q ss_pred CCCCCC----CCCCCCCh-HHHHHH
Q 042017 1 NPYVLS----ADPCGSSS-GSAISV 20 (156)
Q Consensus 1 Np~~~~----~~~gGSS~-Gsaaav 20 (156)
|||+.+ ..+|||+| |.+.+.
T Consensus 3 n~f~L~GKvalVTGas~GIG~aiA~ 27 (247)
T 4hp8_A 3 NPFSLEGRKALVTGANTGLGQAIAV 27 (247)
T ss_dssp CTTCCTTCEEEETTTTSHHHHHHHH
T ss_pred CCcCCCCCEEEEeCcCCHHHHHHHH
Confidence 788765 57899888 555444
No 19
>3ejg_A Non-structural protein 3; HCOV 229E, X-domain, macro domain, NSP3, ADRP, hydrolase, ribosomal frameshifting, RNA-binding; 1.78A {Human coronavirus 229E} PDB: 3ewr_A* 3ewq_A*
Probab=20.24 E-value=25 Score=25.25 Aligned_cols=16 Identities=38% Similarity=0.611 Sum_probs=14.3
Q ss_pred CccchhhhcCCcceec
Q 042017 35 GSILCPSSSNSVVGLK 50 (156)
Q Consensus 35 GSiR~PA~~~Gv~g~k 50 (156)
+||-+|+-.||+|||-
T Consensus 142 ~SIAfPaIstGi~G~P 157 (193)
T 3ejg_A 142 GTPLTPILSCGIFGIK 157 (193)
T ss_dssp SCEEECCTTCGGGCCC
T ss_pred CceeecccccCCCCCC
Confidence 6999999999999874
No 20
>1qys_A TOP7; alpha-beta, novel fold, de novo protein; 2.50A {Computationally designed sequence} SCOP: k.41.1.1
Probab=20.19 E-value=76 Score=19.39 Aligned_cols=20 Identities=20% Similarity=0.270 Sum_probs=17.9
Q ss_pred CHHHHHHHHHHHHHHHhCCC
Q 042017 137 GSPLAQVFDHHLHTLRLNYA 156 (156)
Q Consensus 137 ~~~v~~~~~~ai~~L~~~Ga 156 (156)
..|.+..+++..+.++++||
T Consensus 26 eselqkvlnelmdyikkqga 45 (106)
T 1qys_A 26 ESELQKVLNELMDYIKKQGA 45 (106)
T ss_dssp SSHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHhcCC
Confidence 45799999999999999996
Done!