RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 042017
(156 letters)
>gnl|CDD|236161 PRK08137, PRK08137, amidase; Provisional.
Length = 497
Score = 177 bits (450), Expect = 5e-54
Identities = 79/152 (51%), Positives = 97/152 (63%), Gaps = 5/152 (3%)
Query: 1 NPYVLSADPCGSSSGSAISVAANLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAG 60
NPY L PCGSSSGS +VAA LAAV++GTETDGSI CP++ N +VGLKPT+GL SR G
Sbjct: 151 NPYALDRSPCGSSSGSGAAVAAGLAAVAIGTETDGSITCPAAINGLVGLKPTVGLVSRDG 210
Query: 61 VIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYDPATRAASEYIPRGGYKQFLRPHGLK 120
++PI+ QD+ GP+ RTVADAA VL AIAG D DPAT +A Y L L+
Sbjct: 211 IVPISHSQDTAGPMTRTVADAAAVLTAIAGGDPADPATASAPAPAVD--YVAALDADALR 268
Query: 121 GKRLGIVRNPFFNFDEGSPLAQVFDHHLHTLR 152
G RLG+ RN E + F+ L L+
Sbjct: 269 GARLGVARNYLGYHPE---VDAQFERALAELK 297
>gnl|CDD|180715 PRK06828, PRK06828, amidase; Provisional.
Length = 491
Score = 168 bits (426), Expect = 1e-50
Identities = 71/156 (45%), Positives = 92/156 (58%), Gaps = 5/156 (3%)
Query: 1 NPY---VLSADPCGSSSGSAISVAANLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTS 57
NPY GSS+GSAI+VAAN VS+GTETDGSIL P+ NSVVG+KPT+GL S
Sbjct: 158 NPYGTGEDDMFVGGSSTGSAIAVAANFTVVSVGTETDGSILSPAVQNSVVGIKPTVGLIS 217
Query: 58 RAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYDPATRAASEYIPRGGYKQFLRPH 117
R G+IP T QD+ GP RTV DAA +L ++ G D D T SE I Y ++L +
Sbjct: 218 RRGIIPFTYSQDTAGPFARTVTDAAILLGSLTGVDEKDVVT-HKSEGIAEHDYTKYLDAN 276
Query: 118 GLKGKRLGIVRNPFFNFDEGSPLAQ-VFDHHLHTLR 152
GL G ++G+ N + E + +F + LR
Sbjct: 277 GLNGAKIGVYNNAPKEYYESGEYDEKLFKETIEVLR 312
>gnl|CDD|223232 COG0154, GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit
and related amidases [Translation, ribosomal structure
and biogenesis].
Length = 475
Score = 142 bits (359), Expect = 7e-41
Identities = 58/152 (38%), Positives = 78/152 (51%), Gaps = 6/152 (3%)
Query: 1 NPYVLSADPCGSSSGSAISVAANLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAG 60
NP+ L P GSS GSA +VAA L ++LG++T GSI P++ +VGLKPT G SR G
Sbjct: 146 NPWNLERVPGGSSGGSAAAVAAGLVPLALGSDTGGSIRIPAAFCGLVGLKPTYGRVSRYG 205
Query: 61 VIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYDPATRAASEYIPRGGYKQFLRPHGLK 120
V+P+ D +GP+ RTV DAA +LD IAG D D P L LK
Sbjct: 206 VVPLASSLDQIGPLARTVRDAALLLDVIAGPDPRDSPLPPPPPVPPA------LAGKDLK 259
Query: 121 GKRLGIVRNPFFNFDEGSPLAQVFDHHLHTLR 152
G R+G+ + + F+ + L
Sbjct: 260 GLRIGVPKELGGGGPLDPDVRAAFEAAVKALE 291
>gnl|CDD|235855 PRK06707, PRK06707, amidase; Provisional.
Length = 536
Score = 136 bits (345), Expect = 1e-38
Identities = 58/131 (44%), Positives = 84/131 (64%), Gaps = 2/131 (1%)
Query: 1 NPY-VLSADPCGSSSGSAISVAANLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRA 59
NPY + D GSSSGSA VAA+ A +++GTET GSI+ P++ SVVGL+P+LG+ SR
Sbjct: 215 NPYGPIKFDTSGSSSGSATVVAADFAPLAVGTETTGSIVAPAAQQSVVGLRPSLGMVSRT 274
Query: 60 GVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYDPATRAASEYIPRGGYKQFLRPHGL 119
G+IP+ D+ GP+ RTV DAA + +A+ G+D D + R Y + L GL
Sbjct: 275 GIIPLAETLDTAGPMARTVKDAATLFNAMIGYDEKD-VMTEKVKDKERIDYTKDLSIDGL 333
Query: 120 KGKRLGIVRNP 130
KGK++G++ +
Sbjct: 334 KGKKIGLLFSV 344
>gnl|CDD|216494 pfam01425, Amidase, Amidase.
Length = 431
Score = 134 bits (339), Expect = 2e-38
Identities = 64/152 (42%), Positives = 85/152 (55%), Gaps = 6/152 (3%)
Query: 1 NPYVLSADPCGSSSGSAISVAANLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAG 60
NP+ LS P GSS GSA +VAA L +++GT+T GSI P++ +VGLKPT G SR G
Sbjct: 119 NPWDLSRTPGGSSGGSAAAVAAGLVPLAIGTDTGGSIRIPAAFCGLVGLKPTYGRVSRYG 178
Query: 61 VIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYDPATRAASEYIPRGGYKQFLRPHGLK 120
V+P + D VGP+ RTV DAA +LD IAG+D DP S P + + L+ LK
Sbjct: 179 VVPYSSSLDHVGPLARTVEDAALLLDVIAGYDPADP----TSAPSPVPDFAEPLKKS-LK 233
Query: 121 GKRLGIVRNPFFNFDEGSPLAQVFDHHLHTLR 152
G R+G+ R F F + + L
Sbjct: 234 GLRIGVPRE-DFYFSLDPEVQRAVRKAAAALE 264
>gnl|CDD|234572 PRK00012, gatA, aspartyl/glutamyl-tRNA amidotransferase subunit A;
Reviewed.
Length = 459
Score = 124 bits (315), Expect = 1e-34
Identities = 57/129 (44%), Positives = 75/129 (58%), Gaps = 5/129 (3%)
Query: 1 NPYVLSADPCGSSSGSAISVAANLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAG 60
NP+ L P GSS GSA +VAA LA +LG++T GSI P++ VVGLKPT G SR G
Sbjct: 128 NPWDLERVPGGSSGGSAAAVAAGLAPAALGSDTGGSIRQPAAFCGVVGLKPTYGRVSRYG 187
Query: 61 VIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYDPATRAASEYIPRGGYKQFLRPHGLK 120
+I D +GP RTV DAA +L+AIAG D D + S +P Y L +K
Sbjct: 188 LIAFASSLDQIGPFARTVEDAALLLNAIAGHDPKD----STSADVPVPDYTAALGK-DIK 242
Query: 121 GKRLGIVRN 129
G ++G+ +
Sbjct: 243 GLKIGVPKE 251
>gnl|CDD|232842 TIGR00132, gatA, aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase,
A subunit. In many species, Gln--tRNA ligase is
missing. tRNA(Gln) is misacylated with Glu after which a
heterotrimeric amidotransferase converts Glu to Gln.
This model represents the amidase chain of that
heterotrimer, encoded by the gatA gene. In the Archaea,
Asn--tRNA ligase is also missing. This amidase subunit
may also function in the conversion of Asp-tRNA(Asn) to
Asn-tRNA(Asn), presumably with a different recognition
unit to replace gatB. Both Methanococcus jannaschii and
Methanobacterium thermoautotrophicum have both authentic
gatB and a gatB-related gene, but only one gene like
gatA. It has been shown that gatA can be expressed only
when gatC is also expressed. In most species expressing
the amidotransferase, the gatC ortholog is about 90
residues in length, but in Mycoplasma genitalium and
Mycoplasma pneumoniae the gatC equivalent is as the
C-terminal domain of a much longer protein. Not
surprisingly, the Mycoplasmas also represent the most
atypical lineage of gatA orthology. This orthology group
is more narrowly defined here than in Proc Natl Acad Aci
USA 94, 11819-11826 (1997). In particular, a Rhodococcus
homolog found in association with nitrile hydratase
genes and described as an enantiomer-selective amidase
active on several 2-aryl propionamides, is excluded
here. It is likely, however, that the amidase subunit
GatA is not exclusively a part of the Glu-tRNA(Gln)
amidotransferase heterotrimer and restricted to that
function in all species [Protein synthesis, tRNA
aminoacylation].
Length = 460
Score = 116 bits (293), Expect = 2e-31
Identities = 55/137 (40%), Positives = 74/137 (54%), Gaps = 5/137 (3%)
Query: 1 NPYVLSADPCGSSSGSAISVAANLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAG 60
NP+ L P GSS GSA +VAA+LA SLG++T GSI P+S VVG KPT G SR G
Sbjct: 128 NPWNLDRVPGGSSGGSAAAVAADLAPFSLGSDTGGSIRQPASFCGVVGFKPTYGRVSRYG 187
Query: 61 VIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYDPATRAASEYIPRGGYKQFLRPHGLK 120
++ D +GP RTV D A +LD I+G D D + + K+ LK
Sbjct: 188 LVAYASSLDQIGPFARTVEDIALLLDVISGHDKRDSTSAKVPDPEFFEELKKD-----LK 242
Query: 121 GKRLGIVRNPFFNFDEG 137
G ++G+V+ D+
Sbjct: 243 GLKVGVVKEFSEEMDKE 259
>gnl|CDD|183377 PRK11910, PRK11910, amidase; Provisional.
Length = 615
Score = 100 bits (250), Expect = 2e-25
Identities = 51/127 (40%), Positives = 75/127 (59%), Gaps = 17/127 (13%)
Query: 1 NPYVLSADPCGSSSGSAISVAANLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAG 60
NPY + DP GSSSGSA + ++ AA+++GTET+GSI+ P+S+ S VG KP+ GL + G
Sbjct: 307 NPYSSNLDPSGSSSGSATAATSDFAAIAIGTETNGSIITPASAQSAVGYKPSQGLVNNKG 366
Query: 61 VIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYDPATRAASEYIPRGGYKQFLRPHGLK 120
+IP++ R D+ GP+ RTV DA +A+ P + A LK
Sbjct: 367 IIPLSSRFDTPGPLTRTVNDAYLTTNALTNTTSNPPLSTDA-----------------LK 409
Query: 121 GKRLGIV 127
GKR+G++
Sbjct: 410 GKRIGLL 416
>gnl|CDD|235979 PRK07235, PRK07235, amidase; Provisional.
Length = 502
Score = 99.3 bits (248), Expect = 4e-25
Identities = 52/131 (39%), Positives = 67/131 (51%), Gaps = 4/131 (3%)
Query: 1 NPYVLSADPCGSSSGSAISVAANLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAG 60
NP GSSSGSA VAA +++G + GSI PS+ + G+KPT GL G
Sbjct: 160 NPRDPGYSAGGSSSGSAALVAAGEVDMAIGGDQGGSIRIPSAWCGIYGMKPTHGLVPYTG 219
Query: 61 VIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYDPATRAASEYIPRGGYKQFLRPHGLK 120
PI D +GP+ TV D A +L+ IAG D DP A P Y L G+K
Sbjct: 220 AFPIERTIDHLGPMTATVRDNALLLEVIAGRDGLDPRQPAQ---PPVDDYTAALD-RGVK 275
Query: 121 GKRLGIVRNPF 131
G ++GI+R F
Sbjct: 276 GLKIGILREGF 286
>gnl|CDD|236030 PRK07488, PRK07488, indole acetimide hydrolase; Validated.
Length = 472
Score = 97.0 bits (242), Expect = 3e-24
Identities = 56/132 (42%), Positives = 74/132 (56%), Gaps = 19/132 (14%)
Query: 1 NPYVLSADPCGSSSGSAISVAANLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAG 60
NPY + GSS G+A +VAA LA LGT+T GS+ P++ VVGL+PT+G S G
Sbjct: 146 NPYDPARIAGGSSGGTAAAVAARLAPAGLGTDTGGSVRIPAALCGVVGLRPTVGRYSGDG 205
Query: 61 VIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYDPATRAASEYIPRGGYKQFLRPHGLK 120
V+PI+ +D+VGPI R+VAD A +LDA+ D A A P L
Sbjct: 206 VVPISHTRDTVGPIARSVADLA-LLDAVI---TGDAALPA---------------PVALA 246
Query: 121 GKRLGIVRNPFF 132
G RLG+ PF+
Sbjct: 247 GLRLGVPAAPFW 258
>gnl|CDD|236177 PRK08186, PRK08186, allophanate hydrolase; Provisional.
Length = 600
Score = 92.6 bits (231), Expect = 1e-22
Identities = 59/145 (40%), Positives = 74/145 (51%), Gaps = 15/145 (10%)
Query: 11 GSSSGSAISVAANLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDS 70
GSSSGSA++VA L + +LGT+T GS P++ N++VGLKPTLGL S GV+P D
Sbjct: 150 GSSSGSAVAVALGLVSFALGTDTAGSGRVPAAFNNIVGLKPTLGLLSTRGVVPACRTLDC 209
Query: 71 VGPICRTVADAAYVLDAIAGFDHYDPATRAASEYIPRGGYKQFLRPHGLKGKRLGIVRN- 129
V TV DA VL +AGFD DP +RA P P G R+G+ R
Sbjct: 210 VSVFALTVDDADAVLAVMAGFDPADPYSRANPADAPAA------LPAGP---RVGVPRAA 260
Query: 130 --PFFNFDEGSPLAQVFDHHLHTLR 152
FF D + F L L
Sbjct: 261 QLEFFG-DAEA--EAAFAAALARLE 282
>gnl|CDD|235921 PRK07056, PRK07056, amidase; Provisional.
Length = 454
Score = 91.9 bits (229), Expect = 1e-22
Identities = 49/145 (33%), Positives = 73/145 (50%), Gaps = 21/145 (14%)
Query: 9 PCGSSSGSAISVAANLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQ 68
P GSSSG+A+SVA +AA +LGT+T GSI P++ + G KPT G +P++
Sbjct: 157 PGGSSSGAAVSVADGMAAAALGTDTGGSIRIPAALCGLTGFKPTARRVPLQGAVPLSTTL 216
Query: 69 DSVGPICRTVADAAYVLDAI-AGFDHYDPATRAASEYIPRGGYKQFLRPHGLKGKRLGIV 127
DS+GP+ R+VA A ++DA+ AG + PA R L+G RL +
Sbjct: 217 DSIGPLARSVACCA-LVDAVLAGEEPVVPAARP------------------LEGLRLAVP 257
Query: 128 RNPFFNFDEGSPLAQVFDHHLHTLR 152
+ + +A F+ L L
Sbjct: 258 TTVVLD-GLDATVAAAFERALKRLS 281
>gnl|CDD|233981 TIGR02713, allophanate_hyd, allophanate hydrolase. Allophanate
hydrolase catalyzes the second reaction in an
ATP-dependent two-step degradation of urea to ammonia
and C02, following the action of the biotin-containing
urea carboxylase. The yeast enzyme, a fusion of
allophanate hydrolase to urea carboxylase, is designated
urea amidolyase [Central intermediary metabolism,
Nitrogen metabolism].
Length = 561
Score = 89.3 bits (222), Expect = 2e-21
Identities = 44/89 (49%), Positives = 54/89 (60%)
Query: 11 GSSSGSAISVAANLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDS 70
GSSSGSA++VA L +LGT+T GS P++ N++VGLKPT GL S GV+P D
Sbjct: 113 GSSSGSAVAVARGLVPFALGTDTAGSGRVPAALNNIVGLKPTKGLVSTTGVVPACRSLDC 172
Query: 71 VGPICRTVADAAYVLDAIAGFDHYDPATR 99
V TVADA VL A D DP +R
Sbjct: 173 VSIFALTVADAEQVLRIAAAPDARDPYSR 201
>gnl|CDD|235698 PRK06102, PRK06102, hypothetical protein; Provisional.
Length = 452
Score = 88.6 bits (220), Expect = 3e-21
Identities = 42/92 (45%), Positives = 58/92 (63%)
Query: 9 PCGSSSGSAISVAANLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQ 68
P GSSSGSA++VAA L V++GT+T GS+ P++ N +VG K T G S GV P+
Sbjct: 153 PGGSSSGSAVAVAAGLVPVAMGTDTGGSVRIPAAFNGLVGYKATRGRYSMDGVFPLAKSL 212
Query: 69 DSVGPICRTVADAAYVLDAIAGFDHYDPATRA 100
DS+GP+CR+V DA ++ A+ G D R
Sbjct: 213 DSLGPLCRSVRDAVWIDAAMRGLTAPDVVRRP 244
>gnl|CDD|236409 PRK09201, PRK09201, amidase; Provisional.
Length = 465
Score = 86.2 bits (214), Expect = 2e-20
Identities = 49/103 (47%), Positives = 61/103 (59%), Gaps = 2/103 (1%)
Query: 1 NPYVLSADPCGSSSGSAISVAANLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAG 60
NP+ L+ GSS GSA +VAA L +LG++T+GSI P+S + GLKPT G SRAG
Sbjct: 145 NPHDLTRIAGGSSGGSAAAVAAGLVPFTLGSDTNGSIRVPASLCGIFGLKPTYGRLSRAG 204
Query: 61 VIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYDP--ATRAA 101
P D +GP R+VAD A V D + G D DP A R A
Sbjct: 205 SFPFVASLDHIGPFARSVADLALVYDVLQGPDPQDPFQADRPA 247
>gnl|CDD|233982 TIGR02715, amido_AtzE, amidohydrolase, AtzE family. Members of
this protein family are aminohydrolases related to, but
distinct from, glutamyl-tRNA(Gln) amidotransferase
subunit A. The best characterized member is the biuret
hydrolase of Pseudomonas sp. ADP, which hydrolyzes
ammonia from the three-nitrogen compound biuret to yield
allophanate. Allophanate is also an intermediate in urea
degradation by the urea carboxylase/allophanate
hydrolase pathway, an alternative to urease [Unknown
function, Enzymes of unknown specificity].
Length = 452
Score = 83.3 bits (206), Expect = 2e-19
Identities = 47/97 (48%), Positives = 56/97 (57%)
Query: 1 NPYVLSADPCGSSSGSAISVAANLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAG 60
NP+ L+ GSS GSA +VAA L SLG++T+GSI P+S V GLKPT G SR G
Sbjct: 138 NPHDLTRIAGGSSGGSAAAVAAGLVPFSLGSDTNGSIRVPASLCGVFGLKPTYGRLSRQG 197
Query: 61 VIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYDPA 97
V P D VGP R+V D A D + G D DP
Sbjct: 198 VFPFVASLDHVGPFARSVEDLALAYDVMQGPDPQDPF 234
>gnl|CDD|168315 PRK05962, PRK05962, amidase; Validated.
Length = 424
Score = 81.0 bits (200), Expect = 1e-18
Identities = 48/143 (33%), Positives = 72/143 (50%), Gaps = 19/143 (13%)
Query: 9 PCGSSSGSAISVAANLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQ 68
P GSSSG+A+SVA + +++G++T GS+ P++ N +VG KPT G P++P
Sbjct: 127 PGGSSSGAAVSVAEGTSEIAIGSDTGGSVRIPAALNGLVGFKPTARRIPLEGAFPLSPSL 186
Query: 69 DSVGPICRTVADAAYVLDAIAGFDHYDPATRAASEYIPRGGYKQFLRPHGLKGKRLGIVR 128
DS+GP+ RTVAD A DA+ A + IP L + G R+G+ +
Sbjct: 187 DSIGPLARTVADCA-AADAVM----------AGEKPIP-------LEVLPVAGLRIGLPK 228
Query: 129 NPFFNFDEGSPLAQVFDHHLHTL 151
E +A F+ L L
Sbjct: 229 GYLLADMEP-DVAAAFEASLAAL 250
>gnl|CDD|180437 PRK06169, PRK06169, putative amidase; Provisional.
Length = 466
Score = 80.5 bits (199), Expect = 2e-18
Identities = 43/134 (32%), Positives = 61/134 (45%), Gaps = 16/134 (11%)
Query: 1 NPYVLSADPCGSSSGSAISVAANLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAG 60
NP+ GSS G+A +VA + +S+GT+ GS+ P+S G KPT G
Sbjct: 145 NPWDTRLTAGGSSGGAAAAVALGMGPLSVGTDGGGSVRIPASFCGTFGFKPTFGR----- 199
Query: 61 VIPITPRQDS-----VGPICRTVADAAYVLDAIAGFDHYDPATRAASEYIPRGGYKQFLR 115
+P+ P VGP+ RTVADAA +LD IA D D + P + L
Sbjct: 200 -VPLYPASPFGTLAHVGPMTRTVADAALLLDVIARPDARDWSALPP----PTTSFLDALD 254
Query: 116 PHGLKGKRLGIVRN 129
++G R+
Sbjct: 255 -RDVRGLRIAYSPT 267
>gnl|CDD|181375 PRK08310, PRK08310, amidase; Provisional.
Length = 395
Score = 67.7 bits (166), Expect = 4e-14
Identities = 42/100 (42%), Positives = 56/100 (56%), Gaps = 1/100 (1%)
Query: 1 NPYVLSADPCGSSSGSAISVAANLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAG 60
NP P GSSSGSA +VA LA +LGT+T GS+ P+S + GL+PT G S G
Sbjct: 100 NPAAPDRVPGGSSSGSAAAVAGGLADFALGTDTGGSVRAPASFCGLYGLRPTHGRISLEG 159
Query: 61 VIPITPRQDSVGPICRTVADAAYVLDAIAGFD-HYDPATR 99
V+P+ P D+VG R +A V + + G D P T+
Sbjct: 160 VMPLAPSFDTVGWFARDIALLERVGEVLLGDDAQEFPLTQ 199
>gnl|CDD|235915 PRK07042, PRK07042, amidase; Provisional.
Length = 464
Score = 67.7 bits (166), Expect = 6e-14
Identities = 38/100 (38%), Positives = 54/100 (54%), Gaps = 12/100 (12%)
Query: 1 NPYVLSADPCGSSSGSAISVAANLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAG 60
NP+ L +P GSS+G+ + AA + LGT+ GS+ P+ +VGLKP+LG
Sbjct: 144 NPWDLDQNPGGSSAGAGAAAAAGYGPLHLGTDIGGSVRLPAGWCGIVGLKPSLGR----- 198
Query: 61 VIPITP----RQDSVGPICRTVADAAYVLDAIAGFDHYDP 96
IPI P R GP+ RTV DAA ++ ++ D D
Sbjct: 199 -IPIDPPYTGR--CAGPMTRTVDDAALLMSVLSRPDARDG 235
>gnl|CDD|235686 PRK06061, PRK06061, amidase; Provisional.
Length = 483
Score = 67.4 bits (165), Expect = 8e-14
Identities = 41/116 (35%), Positives = 61/116 (52%), Gaps = 15/116 (12%)
Query: 1 NPYVLSADPCGSSSGSAISVAANLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAG 60
NP+ P GSS GSA +VAA L ++G++ GS+ P++ +VG+KP + G
Sbjct: 153 NPWSRDHTPGGSSGGSAAAVAAGLVTAAIGSDGAGSVRIPAAWTHLVGIKP------QRG 206
Query: 61 VIPITPRQDSV------GPICRTVADAAYVLDAIAG---FDHYDPATRAASEYIPR 107
I P ++ GP+ RTVADAA +LDA +G D + P S+ + R
Sbjct: 207 RISTWPLPEAFNGLTVNGPLARTVADAALLLDAASGNHPGDRHRPPPVTVSDAVGR 262
>gnl|CDD|235723 PRK06170, PRK06170, amidase; Provisional.
Length = 490
Score = 67.0 bits (164), Expect = 1e-13
Identities = 40/102 (39%), Positives = 56/102 (54%), Gaps = 7/102 (6%)
Query: 1 NPYVLSADPCGSSSGSAISVAANLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAG 60
NP+ L+ P GSS GSA ++AA A+S+G++ GS+ P+ V KPTLGL G
Sbjct: 148 NPWDLARTPGGSSGGSAAALAAGFGALSIGSDIGGSLRVPAHYCGVYAHKPTLGLVPLRG 207
Query: 61 -VIPITP----RQD--SVGPICRTVADAAYVLDAIAGFDHYD 95
+ P P + D GP+ R+ D A +LD +AG D D
Sbjct: 208 HIPPPAPALPGQADLAVAGPMARSARDLALLLDVMAGPDPLD 249
>gnl|CDD|166363 PLN02722, PLN02722, indole-3-acetamide amidohydrolase.
Length = 422
Score = 66.5 bits (162), Expect = 1e-13
Identities = 36/96 (37%), Positives = 48/96 (50%)
Query: 1 NPYVLSADPCGSSSGSAISVAANLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAG 60
NP P GSSSGSA++V A L SLGT+T GS+ P+S + G +P+ G S G
Sbjct: 101 NPIAPDRVPGGSSSGSAVAVGAKLVDFSLGTDTGGSVRVPASYCGIFGFRPSHGAVSTVG 160
Query: 61 VIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYDP 96
VIP+ D+VG R V + +P
Sbjct: 161 VIPMAQSFDTVGWFARDPVILKRVGHVLLQQPDVNP 196
>gnl|CDD|180626 PRK06565, PRK06565, amidase; Validated.
Length = 566
Score = 65.2 bits (159), Expect = 5e-13
Identities = 50/147 (34%), Positives = 66/147 (44%), Gaps = 17/147 (11%)
Query: 3 YVLSADPCGSSSGSAISVAANLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVI 62
Y+ + GSS+G+ + AA+ +A L ET S P+S+N + P+ G+ S G
Sbjct: 153 YLTAPFASGSSNGAGTATAASFSAFGLAEETWSSGRGPASNNGLCAYTPSRGVISVRGNW 212
Query: 63 PITPRQDSVGPICRTVADAAYVLDAIAGFDHYDPATR-------------AASEYIPRGG 109
P+TP D V P RT+AD VLD I DP TR ASE P
Sbjct: 213 PLTPTMDVVVPYARTMADLLEVLDVIVA---DDPDTRGDLWRLQPWVPIPKASEVRPASY 269
Query: 110 YKQFLRPHGLKGKRLGIVRNPFFNFDE 136
LKGKR G+ R + N D
Sbjct: 270 LALAAGADALKGKRFGVPRM-YINADP 295
>gnl|CDD|236029 PRK07487, PRK07487, amidase; Provisional.
Length = 469
Score = 64.6 bits (158), Expect = 7e-13
Identities = 44/105 (41%), Positives = 57/105 (54%), Gaps = 13/105 (12%)
Query: 1 NPYVLSADPCGSSSGSAISVAANLAAVSLGTETDGSILCPSSSNSVVGLKPTLG------ 54
NP+ S P GSS G+A +VAA + A++ GT+ GSI P+ + V GL+PTLG
Sbjct: 145 NPWDPSLTPGGSSGGAAAAVAAGIGAIAHGTDIGGSIRYPAYACGVHGLRPTLGRVPAYN 204
Query: 55 --LTSRAGVIPITPRQDSV-GPICRTVADAAYVLDAIAGFDHYDP 96
R PI + SV GP+ RTVAD L A+A D DP
Sbjct: 205 ASSPER----PIGAQLMSVQGPLARTVADLRLALAAMAAPDPRDP 245
>gnl|CDD|171524 PRK12470, PRK12470, amidase; Provisional.
Length = 462
Score = 64.1 bits (156), Expect = 1e-12
Identities = 38/88 (43%), Positives = 48/88 (54%)
Query: 1 NPYVLSADPCGSSSGSAISVAANLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAG 60
NP+ + P GSS GSA +VAA LA V+LG++ GSI PS+ + GLKP S
Sbjct: 144 NPWDPNRTPGGSSGGSAAAVAAGLAPVALGSDGGGSIRIPSTWCGLFGLKPQRDRISLEP 203
Query: 61 VIPITPRQDSVGPICRTVADAAYVLDAI 88
GPI R+V DAA +LDA
Sbjct: 204 HDGAWQGLSVNGPIARSVMDAALLLDAT 231
>gnl|CDD|236028 PRK07486, PRK07486, amidase; Provisional.
Length = 484
Score = 63.9 bits (156), Expect = 1e-12
Identities = 42/132 (31%), Positives = 64/132 (48%), Gaps = 18/132 (13%)
Query: 1 NPYVLSADPCGSSSGSAISVAANLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAG 60
NPY S GSS G+A ++A + V+ G++ GS+ P++ N+V G +P+ G
Sbjct: 150 NPYDPSRSAGGSSGGAAAALALRMLPVADGSDMMGSLRNPAAFNNVYGFRPSQGR----- 204
Query: 61 VIPITPRQD-------SVGPICRTVADAAYVLDAIAGFDHYDPATRAASEYIPRGGYKQF 113
+P P D + GP+ RTV D A +L AG+D DP + A P +
Sbjct: 205 -VPHGPGGDVFVQQLGTEGPMGRTVEDVALLLAVQAGYDPRDPLSLAED---PARFAQPL 260
Query: 114 LRPHGLKGKRLG 125
L+GKR+
Sbjct: 261 EAD--LRGKRIA 270
>gnl|CDD|235945 PRK07139, PRK07139, amidase; Provisional.
Length = 439
Score = 56.2 bits (136), Expect = 5e-10
Identities = 29/85 (34%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 11 GSSSGSAISVAANLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDS 70
GSSSGSA + N++ ++G++T S+ P+S VG KP+ G SR G+ D+
Sbjct: 119 GSSSGSAATFNKNIS-FAIGSDTGDSVRLPASFIGKVGFKPSYGAISRYGLFAYASSLDT 177
Query: 71 VGPICRTVADAAYVLDAIAGFDHYD 95
V V DA + + G D D
Sbjct: 178 VAYFTHNVNDAIILSKVLFGKDEND 202
>gnl|CDD|181154 PRK07869, PRK07869, amidase; Provisional.
Length = 468
Score = 46.1 bits (110), Expect = 2e-06
Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 5/90 (5%)
Query: 1 NPYVLSADPCGSSSGSAISVAANLAAVSLGTETDGSILCPSSSNSVVGLKPTLG--LTSR 58
NP+ SS GSA VAA + ++ + GSI P++ +VGLKP+ G
Sbjct: 146 NPWNTDYSAGASSGGSAALVAAGVVPIAHANDGGGSIRIPAACCGLVGLKPSRGRLPLDP 205
Query: 59 AG-VIPITPRQDSVGPICRTVADAAYVLDA 87
+P+ + G + RTV D A
Sbjct: 206 ELRRLPV--NIVANGVLTRTVRDTAAFYRE 233
>gnl|CDD|180608 PRK06529, PRK06529, amidase; Provisional.
Length = 482
Score = 40.6 bits (95), Expect = 1e-04
Identities = 23/56 (41%), Positives = 35/56 (62%), Gaps = 6/56 (10%)
Query: 11 GSSSGSAISVAANLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITP 66
GSS G+A V++ + A++ ++ GSI P+S N ++GLKP SR G IP+ P
Sbjct: 146 GSSGGAAALVSSGIVALAAASDGGGSIRIPASFNGLIGLKP-----SR-GRIPVGP 195
>gnl|CDD|100090 cd03088, ManB, ManB is a bacterial phosphomannomutase (PMM) that
catalyzes the conversion of mannose 6-phosphate to
mannose-1-phosphate in the second of three steps in the
GDP-mannose pathway, in which GDP-D-mannose is
synthesized from fructose-6-phosphate. In Mycobacterium
tuberculosis, the causative agent of tuberculosis, PMM
is involved in the biosynthesis of mannosylated
lipoglycans that participate in the association of
mycobacteria with host macrophage phagocytic receptors.
ManB belongs to the the alpha-D-phosphohexomutase
superfamily which includes several related enzymes that
catalyze a reversible intramolecular phosphoryl transfer
on their sugar substrates. Other members of this
superfamily include the phosphoglucomutases (PGM1 and
PGM2), phosphoglucosamine mutase (PNGM),
phosphoacetylglucosamine mutase (PAGM), the bacterial
phosphoglucosamine mutase GlmM, and the bifunctional
phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of
these enzymes has four domains with a centrally located
active site formed by four loops, one from each domain.
All four domains are included in this alignment model.
Length = 459
Score = 30.2 bits (69), Expect = 0.37
Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 96 PATRAASEYIPRGGYKQFLRPHGLKGKRLGI 126
P T AA YI R Y F LKG R+G+
Sbjct: 142 PDTDAADAYIAR--YTDFFGAGALKGLRIGV 170
>gnl|CDD|236170 PRK08166, PRK08166, NADH dehydrogenase subunit G; Validated.
Length = 791
Score = 28.0 bits (63), Expect = 2.2
Identities = 26/97 (26%), Positives = 38/97 (39%), Gaps = 18/97 (18%)
Query: 10 CGSSSGSA--ISVAANLAAVSLGTETDGSILC-PSSSNSVVGLKPTLGLTSRAGVIPITP 66
G+S+GS I AAN+A G D I +NS +GL G
Sbjct: 444 SGTSAGSPAIIEAAANVAKALKGRGADVGITLVAPEANS-------MGLALLGG----GS 492
Query: 67 RQDSVGPICRTVADAAYVLDAIAGFDHYDPATRAASE 103
++++ + ADA VL+ D Y A A +
Sbjct: 493 LEEALEELESGRADAVIVLEN----DLYRHAPAARVD 525
>gnl|CDD|184949 PRK14987, PRK14987, gluconate operon transcriptional regulator;
Provisional.
Length = 331
Score = 27.7 bits (61), Expect = 2.6
Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 11/57 (19%)
Query: 52 TLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYDPATRAASEYIPRG 108
TL + AG IP+ DS P LD GFD+++ A + + I RG
Sbjct: 134 TLKMIEVAG-IPVVELMDSQSP----------CLDIAVGFDNFEAARQMTTAIIARG 179
>gnl|CDD|217352 pfam03071, GNT-I, GNT-I family. Alpha-1,3-mannosyl-glycoprotein
beta-1,2-N-acetylglucosaminyltransferase (GNT-I,
GLCNAC-T I) EC:2.4.1.101 transfers
N-acetyl-D-glucosamine from UDP to high-mannose
glycoprotein N-oligosaccharide. This is an essential
step in the synthesis of complex or hybrid-type N-linked
oligosaccharides. The enzyme is an integral membrane
protein localised to the Golgi apparatus, and is
probably distributed in all tissues. The catalytic
domain is located at the C-terminus.
Length = 434
Score = 27.5 bits (61), Expect = 3.5
Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 11/45 (24%)
Query: 111 KQFLRPHGLKGKRLGIVRNPFFNF-DEGSPLAQVFDHHLHTLRLN 154
+Q +RP I R NF EGS Q F HL ++LN
Sbjct: 291 RQCIRPE--------ISRT--MNFGKEGSSKGQFFSQHLEKIKLN 325
>gnl|CDD|202370 pfam02745, MCR_alpha_N, Methyl-coenzyme M reductase alpha subunit,
N-terminal domain. Methyl-coenzyme M reductase (MCR) is
the enzyme responsible for microbial formation of
methane. It is a hexamer composed of 2 alpha (this
family), 2 beta (pfam02241), and 2 gamma (pfam02240)
subunits with two identical nickel porphinoid active
sites. The N-terminal domain has a ferredoxin-like fold.
Length = 267
Score = 27.1 bits (60), Expect = 3.5
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
Query: 95 DPATRAASEYIPRGGYKQFLRPHGLK--GKRLGIVRN-PFFNFDEGSPLAQ 142
DP + Y GG+KQ R K++ R PF+N D G PL Q
Sbjct: 16 DPEEKYTKFYR-FGGWKQSERKKEFVEAAKKIAEKRGIPFYNPDIGVPLGQ 65
>gnl|CDD|240651 cd12174, PGDH_like_3, Putative D-3-Phosphoglycerate Dehydrogenases,
NAD-binding and catalytic domains. Phosphoglycerate
dehydrogenases (PGDHs) catalyze the initial step in the
biosynthesis of L-serine from D-3-phosphoglycerate.
PGDHs come in 3 distinct structural forms, with this
first group being related to 2-hydroxy acid
dehydrogenases, sharing structural similarity to formate
and glycerate dehydrogenases of the D-specific
2-hydroxyacid dehydrogenase superfamily, which also
include groups such as L-alanine dehydrogenase and
S-adenosylhomocysteine hydrolase. Despite often low
sequence identity, these proteins typically have a
characteristic arrangement of 2 similar subdomains of
the alpha/beta Rossmann fold NAD+ binding form. The NAD+
binding domain is inserted within the linear sequence of
the mostly N-terminal catalytic domain, which has a
similar domain structure to the internal NAD binding
domain. Structurally, these domains are connected by
extended alpha helices and create a cleft in which NAD
is bound, primarily to the C-terminal portion of the 2nd
(internal) domain. Some related proteins have similar
structural subdomain but with a tandem arrangement of
the catalytic and NAD-binding subdomains in the linear
sequence. Many, not all, members of this family are
dimeric.
Length = 305
Score = 27.1 bits (61), Expect = 4.2
Identities = 9/19 (47%), Positives = 12/19 (63%), Gaps = 1/19 (5%)
Query: 109 GYKQFLRPHGLKGKRLGIV 127
G KQF L+GK LG++
Sbjct: 124 GKKQF-VGTELRGKTLGVI 141
>gnl|CDD|241494 cd13340, PH-GRAM_MTMR5, Myotubularian (MTM) related 5 protein
(MTMR5) Pleckstrin Homology-Glucosyltransferases,
Rab-like GTPase activators and Myotubularins (PH-GRAM)
domain. MTMR5 (also called SBF1/SET binding factor 1)
is a catalytically inactive phosphatase that plays a
role as an adapter for the phosphatase myotubularin to
regulate myotubularintracellular location. It lacks
several amino acids in the dsPTPase catalytic pocket
which renders it catalytically inactive as a
phosphatase. MTMR5 is the most well-studied inactive
member of this family and has been implicated in
cellular growth control and oncogenic transformation.
MTMR5 and MTMR13 contain an N-terminal DENN domain, a
PH-GRAM domain, an inactive PTP domain, a SET
interaction domain, a coiled-coil domain, and a
C-terminal PH domain. Myotubularin-related proteins are
a subfamily of protein tyrosine phosphatases (PTPs) that
dephosphorylate D3-phosphorylated inositol lipids.
Mutations in this family cause the human neuromuscular
disorders myotubular myopathy and type 4B
Charcot-Marie-Tooth syndrome. 6 of the 13 MTMRs (MTMRs
5, 9-13) contain naturally occurring substitutions of
residues required for catalysis by PTP family enzymes.
Although these proteins are predicted to be
enzymatically inactive, they are thought to function as
antagonists of endogenous phosphatase activity or
interaction modules. Most MTMRs contain a N-terminal
PH-GRAM domain, a Rac-induced recruitment domain (RID)
domain, a PTP domain (which may be active or inactive),
a SET-interaction domain, and a C-terminal coiled-coil
region. In addition some members contain DENN domain
N-terminal to the PH-GRAM domain and FYVE, PDZ, and PH
domains C-terminal to the coiled-coil region. The GRAM
domain, found in myotubularins, glucosyltransferases,
and other putative membrane-associated proteins, is part
of a larger motif with a pleckstrin homology (PH) domain
fold. The PH domain family possesses multiple functions
including the ability to bind phosphoinositides via its
beta1/beta2, beta3/beta4, and beta6/beta7 connecting
loops and to other proteins. However, no
phosphoinositide binding sites have been found for the
MTMRs to date.
Length = 185
Score = 26.8 bits (59), Expect = 5.0
Identities = 12/21 (57%), Positives = 13/21 (61%), Gaps = 2/21 (9%)
Query: 134 FDE--GSPLAQVFDHHLHTLR 152
FDE S A+VF HLH LR
Sbjct: 136 FDEEVASDSAEVFRKHLHKLR 156
>gnl|CDD|215071 PLN00137, PLN00137, NHAD transporter family protein; Provisional.
Length = 424
Score = 26.6 bits (59), Expect = 6.6
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 16 SAISVAANLAAVSLGTETDGSILCPSSSNSVVGLKP 51
SA+S+A LA +SL +E +GS S + + P
Sbjct: 188 SAVSLAVPLALMSLTSEENGSPQDSSPLLASEQMAP 223
>gnl|CDD|226544 COG4058, McrA, Methyl coenzyme M reductase, alpha subunit [Coenzyme
metabolism].
Length = 553
Score = 26.3 bits (58), Expect = 8.3
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Query: 95 DPATRAASEYIPRGGYKQFLRPHGLK--GKRLGIVRN-PFFNFDEGSPLAQ 142
DP + Y+ GG++Q R K++ R PF+N D G PL Q
Sbjct: 20 DPEEKYTKFYV-FGGWRQSARKQEFVKAAKKIAEKRGIPFYNPDIGVPLGQ 69
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.136 0.408
Gapped
Lambda K H
0.267 0.0581 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,953,560
Number of extensions: 726842
Number of successful extensions: 655
Number of sequences better than 10.0: 1
Number of HSP's gapped: 635
Number of HSP's successfully gapped: 46
Length of query: 156
Length of database: 10,937,602
Length adjustment: 89
Effective length of query: 67
Effective length of database: 6,990,096
Effective search space: 468336432
Effective search space used: 468336432
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.3 bits)