RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 042017
(156 letters)
>d2f2aa1 c.117.1.1 (A:1-485) Glutamyl-tRNA(Gln) amidotransferase
subunit A {Staphylococcus aureus [TaxId: 1280]}
Length = 485
Score = 111 bits (277), Expect = 5e-30
Identities = 50/152 (32%), Positives = 79/152 (51%), Gaps = 6/152 (3%)
Query: 1 NPYVLSADPCGSSSGSAISVAANLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAG 60
NP+ A P GSS GSA +VAA L +SLG++T GSI P++ VVG+KPT G SR G
Sbjct: 143 NPFDHKAVPGGSSGGSAAAVAAGLVPLSLGSDTGGSIRQPAAYCGVVGMKPTYGRVSRFG 202
Query: 61 VIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYDPATRAASEYIPRGGYKQFLRPHGLK 120
++ D +GP+ R V D A VL+AI+G D D + + + + +K
Sbjct: 203 LVAFASSLDQIGPLTRNVKDNAIVLEAISGADVNDSTSAP----VDDVDFTSEIGK-DIK 257
Query: 121 GKRLGIVRNPFFNFDEGSPLAQVFDHHLHTLR 152
G ++ + + + + + + + TL+
Sbjct: 258 GLKVALPKE-YLGEGVADDVKEAVQNAVETLK 288
>d2gi3a1 c.117.1.1 (A:1-475) Glutamyl-tRNA(Gln) amidotransferase
subunit A {Thermotoga maritima [TaxId: 2336]}
Length = 475
Score = 90.7 bits (224), Expect = 1e-22
Identities = 44/138 (31%), Positives = 68/138 (49%), Gaps = 7/138 (5%)
Query: 15 GSAISVAANLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPI 74
GSA +V+A + +LG++T GS+ P+S VVG KPT GL SR G++ D +GPI
Sbjct: 144 GSAAAVSAGMVVAALGSDTGGSVRQPASLCGVVGYKPTYGLVSRYGLVAFASSLDQIGPI 203
Query: 75 CRTVADAAYVLDAIAGFDHYDPATRAASEYIPRGGYKQFLRPHGLKGKRLGIVRNPFFNF 134
+TV DAA +++ I+G D D + R G+ G + V +
Sbjct: 204 TKTVRDAAILMEIISGRDENDA------TTVNRKVDFLSEIEEGVSGMK-FAVPEEIYEH 256
Query: 135 DEGSPLAQVFDHHLHTLR 152
D +++ F+ L L
Sbjct: 257 DIEEGVSERFEEALKLLE 274
>d1m22a_ c.117.1.1 (A:) Peptide amidase Pam {Stenotrophomonas
maltophilia [TaxId: 40324]}
Length = 490
Score = 52.0 bits (123), Expect = 4e-09
Identities = 79/149 (53%), Positives = 101/149 (67%), Gaps = 1/149 (0%)
Query: 1 NPYVLSADPCGSSSGSAISVAANLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAG 60
NPY +S PCGSSSGSA++VAANLA+V++GTETDGSI+CP++ N VVGLKPT+GL SR G
Sbjct: 150 NPYRISHSPCGSSSGSAVAVAANLASVAIGTETDGSIVCPAAINGVVGLKPTVGLVSRDG 209
Query: 61 VIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYDPATRAASEYIPRGGYKQFLRPHGLK 120
+IPI+ QD+ GP+ R+VADAA VL AIAG D DP A Y L P GL+
Sbjct: 210 IIPISFSQDTAGPMARSVADAAAVLTAIAGRDDADP-ATATMPGRAVYDYTARLDPQGLR 268
Query: 121 GKRLGIVRNPFFNFDEGSPLAQVFDHHLH 149
GKR+G+++ P + PL + L
Sbjct: 269 GKRIGLLQTPLLKYRGMPPLIEQAATELR 297
>d1ocka_ c.117.1.1 (A:) Malonamidase E2 {Bradyrhizobium japonicum
[TaxId: 375]}
Length = 412
Score = 30.9 bits (68), Expect = 0.065
Identities = 25/81 (30%), Positives = 41/81 (50%)
Query: 14 SGSAISVAANLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGP 73
SGSA +V A + ++LGT+T GS++ P++ +KP+ + GV + D+VG
Sbjct: 133 SGSAAAVGAGMIPLALGTQTGGSVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGL 192
Query: 74 ICRTVADAAYVLDAIAGFDHY 94
D A L A+ G +
Sbjct: 193 FGARAEDLARGLLAMTGRSEF 213
>d1u09a_ e.8.1.4 (A:) Viral RNA polymerase {Foot-and-mouth disease
virus [TaxId: 12110]}
Length = 476
Score = 29.2 bits (65), Expect = 0.20
Identities = 15/59 (25%), Positives = 22/59 (37%), Gaps = 14/59 (23%)
Query: 86 DAIAGFDHYDPATRAASEYIPRGGYKQFLRPHGLKGKRLGIVRNPFFNFDEGSPLAQVF 144
+AI G D D + G P L+GKR R +F+ G+ +V
Sbjct: 100 EAIKGVDGLDAMEPDTAP-----GL-----PWALQGKR----RGALIDFENGTVGPEVE 144
>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048
{Vibrio cholerae [TaxId: 666]}
Length = 167
Score = 27.9 bits (61), Expect = 0.40
Identities = 7/61 (11%), Positives = 18/61 (29%), Gaps = 8/61 (13%)
Query: 73 PICRTVADAAYVLDAIA--------GFDHYDPATRAASEYIPRGGYKQFLRPHGLKGKRL 124
P+ + + + + GF+ +D + + G + L +L
Sbjct: 94 PLAASAQECENLYELAEKHHQPLYVGFNGFDAMVQDWLQVAAAGKLPTHIIERNLASHQL 153
Query: 125 G 125
Sbjct: 154 A 154
>d1hbna2 d.58.31.2 (A:2-269) Alpha chain {Archaeon Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 268
Score = 27.2 bits (60), Expect = 0.77
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
Query: 95 DPATRAASEYIPRGGYKQFLRPHGLK--GKRLGIVRN-PFFNFDEGSPLAQ 142
P + + Y GG+KQ R GK + R P +N D G+PL Q
Sbjct: 16 SPEEKKTTFYT-LGGWKQSERKTEFVNAGKEVAAKRGIPQYNPDIGTPLGQ 65
>d1e6va2 d.58.31.2 (A:8-272) Alpha chain {Archaeon Methanopyrus
kandleri [TaxId: 2320]}
Length = 265
Score = 27.2 bits (60), Expect = 0.94
Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 4/51 (7%)
Query: 95 DPATRAASEYIPRGGYKQFLRPHGLK--GKRLGIVRN-PFFNFDEGSPLAQ 142
P + YI GG+KQ R K ++ R P +N D G PL Q
Sbjct: 13 SPEEKYTKFYI-FGGWKQSERKKEFKEWADKIVEERGVPHYNPDIGVPLGQ 62
>d1wkva1 c.79.1.1 (A:2-383) O-acetylserine sulfhydrylase (Cysteine
synthase) {Archaeon Aeropyrum pernix [TaxId: 56636]}
Length = 382
Score = 24.4 bits (52), Expect = 7.2
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 10 CGSSSGSAISVAANLAA 26
G S G+A+ A AA
Sbjct: 337 IGPSGGAAVKALAKKAA 353
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.136 0.408
Gapped
Lambda K H
0.267 0.0477 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 568,297
Number of extensions: 24718
Number of successful extensions: 54
Number of sequences better than 10.0: 1
Number of HSP's gapped: 54
Number of HSP's successfully gapped: 9
Length of query: 156
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 78
Effective length of database: 1,336,656
Effective search space: 104259168
Effective search space used: 104259168
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.3 bits)