BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042018
(346 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q3SWZ6|SBDS_BOVIN Ribosome maturation protein SBDS OS=Bos taurus GN=SBDS PE=2 SV=1
Length = 250
Score = 230 bits (587), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 119/246 (48%), Positives = 165/246 (67%), Gaps = 15/246 (6%)
Query: 4 TLVQPVGQKRLTNVAVVRLKKHGMRFEIACYKNKVLSWRSQVEKDLDEVLQSHTVYSNVS 63
++ P Q RLTNVAVVR+K+ G RFEIACYKNKV+ WRS VEKDLDEVLQ+H+V+ NVS
Sbjct: 2 SIFTPTNQIRLTNVAVVRMKRAGKRFEIACYKNKVVGWRSGVEKDLDEVLQTHSVFVNVS 61
Query: 64 KGILAKSKDLIQHL-----------ILEKGELQVAGKERETQFSNQFRDIATIVMQKTVN 112
KG +AK +DLI IL KGE+QV+ KER TQ FRDIATIV K VN
Sbjct: 62 KGQVAKKEDLISAFGTDDQTEICKQILTKGEVQVSDKERHTQLEQMFRDIATIVADKCVN 121
Query: 113 SETQRPYTISMIERLMHEIHFAVDPNSSSKKQALEVIRELQKHFPIKRSPMRVGLTVPEQ 172
ET+RPYT+ +IER M +IH++V PN S+K+QALEVI++L++ I+R+ MR+ +P
Sbjct: 122 PETKRPYTVILIERAMKDIHYSVKPNKSTKQQALEVIKQLKEKMKIERAHMRLRFILP-V 180
Query: 173 NISSLMEKLDAWNASIVSKDNSGSQLSLICEMEPGLFRDCDTLLR---NLQGRLEILAVS 229
N +++ ++ ++ G QL ++C ++PG FR+ D L++ +G LE+L++
Sbjct: 181 NEGKKLKEKLKPLIKVIESEDYGQQLEIVCLIDPGCFREVDELIKKETKGKGSLEVLSLK 240
Query: 230 VHAEGD 235
EGD
Sbjct: 241 DVEEGD 246
>sp|P70122|SBDS_MOUSE Ribosome maturation protein SBDS OS=Mus musculus GN=Sbds PE=1 SV=4
Length = 250
Score = 228 bits (581), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 119/246 (48%), Positives = 164/246 (66%), Gaps = 15/246 (6%)
Query: 4 TLVQPVGQKRLTNVAVVRLKKHGMRFEIACYKNKVLSWRSQVEKDLDEVLQSHTVYSNVS 63
++ P Q RLTNVAVVR+K+ G RFEIACYKNKV+ WRS VEKDLDEVLQ+H+V+ NVS
Sbjct: 2 SIFTPTNQIRLTNVAVVRMKRGGKRFEIACYKNKVVGWRSGVEKDLDEVLQTHSVFVNVS 61
Query: 64 KGILAKSKDLIQHL-----------ILEKGELQVAGKERETQFSNQFRDIATIVMQKTVN 112
KG +AK +DLI IL KGE+QV+ KER TQ FRDIATIV K VN
Sbjct: 62 KGQVAKKEDLISAFGTDDQTEICKQILTKGEVQVSDKERHTQLEQMFRDIATIVADKCVN 121
Query: 113 SETQRPYTISMIERLMHEIHFAVDPNSSSKKQALEVIRELQKHFPIKRSPMRVGLTVPEQ 172
ET+RPYT+ +IER M +IH++V PN S+K+QALEVI++L++ I+R+ MR+ +P
Sbjct: 122 PETKRPYTVILIERAMKDIHYSVKPNKSTKQQALEVIKQLKEKMKIERAHMRLRFILP-V 180
Query: 173 NISSLMEKLDAWNASIVSKDNSGSQLSLICEMEPGLFRDCDTLLR---NLQGRLEILAVS 229
N +++ +V ++ QL ++C ++PG FR+ D L++ +G LE+L++
Sbjct: 181 NEGKKLKEKLKPLMKVVESEDYSQQLEIVCLIDPGCFREIDELIKKETKGRGSLEVLSLK 240
Query: 230 VHAEGD 235
EGD
Sbjct: 241 DVEEGD 246
>sp|Q5RK30|SBDS_RAT Ribosome maturation protein SBDS OS=Rattus norvegicus GN=Sbds PE=2
SV=1
Length = 250
Score = 228 bits (580), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 119/246 (48%), Positives = 164/246 (66%), Gaps = 15/246 (6%)
Query: 4 TLVQPVGQKRLTNVAVVRLKKHGMRFEIACYKNKVLSWRSQVEKDLDEVLQSHTVYSNVS 63
++ P Q RLTNVAVVR+K+ G RFEIACYKNKV+ WRS VEKDLDEVLQ+H+V+ NVS
Sbjct: 2 SIFTPTNQIRLTNVAVVRMKRGGKRFEIACYKNKVVGWRSGVEKDLDEVLQTHSVFVNVS 61
Query: 64 KGILAKSKDLIQHL-----------ILEKGELQVAGKERETQFSNQFRDIATIVMQKTVN 112
KG +AK +DLI IL KGE+QV+ KER TQ FRDIATIV K VN
Sbjct: 62 KGQVAKKEDLISAFGTDDQTEICKQILTKGEVQVSDKERHTQLEQMFRDIATIVADKCVN 121
Query: 113 SETQRPYTISMIERLMHEIHFAVDPNSSSKKQALEVIRELQKHFPIKRSPMRVGLTVPEQ 172
ET+RPYT+ +IER M +IH++V PN S+K+QALEVI++L++ I+R+ MR+ +P
Sbjct: 122 PETKRPYTVILIERAMKDIHYSVKPNKSTKQQALEVIKQLKEKMKIERAHMRLRFLLP-V 180
Query: 173 NISSLMEKLDAWNASIVSKDNSGSQLSLICEMEPGLFRDCDTLLR---NLQGRLEILAVS 229
N +++ +V ++ QL ++C ++PG FR+ D L++ +G LE+L++
Sbjct: 181 NEGKKLKEKLKPLMKVVESEDYSQQLEIVCLIDPGCFREIDELIKKETKGKGSLEVLSLK 240
Query: 230 VHAEGD 235
EGD
Sbjct: 241 DVEEGD 246
>sp|Q5RAZ2|SBDS_PONAB Ribosome maturation protein SBDS OS=Pongo abelii GN=SBDS PE=2 SV=1
Length = 250
Score = 226 bits (576), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 118/246 (47%), Positives = 163/246 (66%), Gaps = 15/246 (6%)
Query: 4 TLVQPVGQKRLTNVAVVRLKKHGMRFEIACYKNKVLSWRSQVEKDLDEVLQSHTVYSNVS 63
++ P Q RLTNVAVVR+K+ G RFEIACYKNKV+ WRS VEKDLDEVLQ+H+V+ NVS
Sbjct: 2 SIFTPTNQIRLTNVAVVRMKRAGKRFEIACYKNKVVGWRSGVEKDLDEVLQTHSVFVNVS 61
Query: 64 KGILAKSKDLIQHL-----------ILEKGELQVAGKERETQFSNQFRDIATIVMQKTVN 112
KG +AK +DLI IL KGE+QV+ KER TQ FRDIATIV K VN
Sbjct: 62 KGQVAKKEDLISAFGTDDQTEICKQILTKGEVQVSDKERHTQLEQMFRDIATIVADKCVN 121
Query: 113 SETQRPYTISMIERLMHEIHFAVDPNSSSKKQALEVIRELQKHFPIKRSPMRVGLTVPEQ 172
ET+RPYT+ +IER M +IH++V N S+K+QALEVI++L++ I+R+ MR+ +P
Sbjct: 122 PETKRPYTVILIERAMKDIHYSVKTNKSTKQQALEVIKQLKEKMKIERAHMRLRFILP-V 180
Query: 173 NISSLMEKLDAWNASIVSKDNSGSQLSLICEMEPGLFRDCDTLLR---NLQGRLEILAVS 229
N +++ ++ ++ G QL ++C ++PG FR+ D L++ +G LE+L +
Sbjct: 181 NEGKKLKEKLKPLIKVIESEDYGQQLEIVCLIDPGCFREIDELIKKETKGKGSLEVLNLK 240
Query: 230 VHAEGD 235
EGD
Sbjct: 241 DVEEGD 246
>sp|Q9Y3A5|SBDS_HUMAN Ribosome maturation protein SBDS OS=Homo sapiens GN=SBDS PE=1 SV=4
Length = 250
Score = 226 bits (576), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 118/246 (47%), Positives = 163/246 (66%), Gaps = 15/246 (6%)
Query: 4 TLVQPVGQKRLTNVAVVRLKKHGMRFEIACYKNKVLSWRSQVEKDLDEVLQSHTVYSNVS 63
++ P Q RLTNVAVVR+K+ G RFEIACYKNKV+ WRS VEKDLDEVLQ+H+V+ NVS
Sbjct: 2 SIFTPTNQIRLTNVAVVRMKRAGKRFEIACYKNKVVGWRSGVEKDLDEVLQTHSVFVNVS 61
Query: 64 KGILAKSKDLIQHL-----------ILEKGELQVAGKERETQFSNQFRDIATIVMQKTVN 112
KG +AK +DLI IL KGE+QV+ KER TQ FRDIATIV K VN
Sbjct: 62 KGQVAKKEDLISAFGTDDQTEICKQILTKGEVQVSDKERHTQLEQMFRDIATIVADKCVN 121
Query: 113 SETQRPYTISMIERLMHEIHFAVDPNSSSKKQALEVIRELQKHFPIKRSPMRVGLTVPEQ 172
ET+RPYT+ +IER M +IH++V N S+K+QALEVI++L++ I+R+ MR+ +P
Sbjct: 122 PETKRPYTVILIERAMKDIHYSVKTNKSTKQQALEVIKQLKEKMKIERAHMRLRFILP-V 180
Query: 173 NISSLMEKLDAWNASIVSKDNSGSQLSLICEMEPGLFRDCDTLLR---NLQGRLEILAVS 229
N +++ ++ ++ G QL ++C ++PG FR+ D L++ +G LE+L +
Sbjct: 181 NEGKKLKEKLKPLIKVIESEDYGQQLEIVCLIDPGCFREIDELIKKETKGKGSLEVLNLK 240
Query: 230 VHAEGD 235
EGD
Sbjct: 241 DVEEGD 246
>sp|Q5ZIY4|SBDS_CHICK Ribosome maturation protein SBDS OS=Gallus gallus GN=SBDS PE=2 SV=1
Length = 250
Score = 226 bits (575), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 116/246 (47%), Positives = 166/246 (67%), Gaps = 15/246 (6%)
Query: 4 TLVQPVGQKRLTNVAVVRLKKHGMRFEIACYKNKVLSWRSQVEKDLDEVLQSHTVYSNVS 63
++ P Q RLTNVAVVR ++ G RFEIACY+NKV+ WRS EKD+DEVLQ+HTV+ NVS
Sbjct: 2 SIFTPTNQIRLTNVAVVRARRAGKRFEIACYRNKVMGWRSGAEKDIDEVLQTHTVFVNVS 61
Query: 64 KGILAKSKDLIQ-----------HLILEKGELQVAGKERETQFSNQFRDIATIVMQKTVN 112
KG +AK +DL++ +IL KGELQV+ KER+TQ FRDIATIV K VN
Sbjct: 62 KGQVAKKEDLVRAFGTDDQTEICKVILSKGELQVSDKERQTQLEQMFRDIATIVADKCVN 121
Query: 113 SETQRPYTISMIERLMHEIHFAVDPNSSSKKQALEVIRELQKHFPIKRSPMRVGLTVPEQ 172
ET+RPYT+ +IER M +IH++V PN S+K+QALEVIR+L++ I+R+ MR+ +P +
Sbjct: 122 PETKRPYTVILIERAMKDIHYSVKPNKSTKQQALEVIRQLKETMQIERAHMRLRFILPVK 181
Query: 173 NISSLMEKLDAWNASIVSKDNSGSQLSLICEMEPGLFRDCDTLLRNL---QGRLEILAVS 229
+++ ++ ++ QL ++C ++PG FR+ D L+R+ +G LE+L++
Sbjct: 182 E-GKKLKEKLKPLIKVIENEDFHDQLEIVCLIDPGCFREIDELIRSETKGKGTLEVLSLK 240
Query: 230 VHAEGD 235
EGD
Sbjct: 241 DVEEGD 246
>sp|A5D8M6|SBDS_XENLA Ribosome maturation protein SBDS OS=Xenopus laevis GN=sbds PE=2
SV=1
Length = 250
Score = 223 bits (567), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 123/246 (50%), Positives = 165/246 (67%), Gaps = 15/246 (6%)
Query: 4 TLVQPVGQKRLTNVAVVRLKKHGMRFEIACYKNKVLSWRSQVEKDLDEVLQSHTVYSNVS 63
++ P Q RLTNVAVVR+KK G RFEIACYKNKV+SWRS EKDLDEVLQ+H+V+ NVS
Sbjct: 2 SIFTPTNQIRLTNVAVVRMKKGGKRFEIACYKNKVMSWRSGAEKDLDEVLQTHSVFMNVS 61
Query: 64 KGILAKSKDLIQHL-----------ILEKGELQVAGKERETQFSNQFRDIATIVMQKTVN 112
KG AK +DL++ IL KGELQV+ KER TQ FRDIATIV K VN
Sbjct: 62 KGQGAKKEDLLKAFGTEDQTEICKQILSKGELQVSEKERSTQLEQMFRDIATIVADKCVN 121
Query: 113 SETQRPYTISMIERLMHEIHFAVDPNSSSKKQALEVIRELQKHFPIKRSPMRVGLTVPEQ 172
ET+RPYT+++IER M +IH++V S+K+QAL+VI++L++ I+R+ MR+ VP +
Sbjct: 122 PETKRPYTVNLIERAMKDIHYSVKATKSTKQQALDVIKQLKETMQIERAHMRLRFIVPAK 181
Query: 173 NISSLMEKLDAWNASIVSKDNSGSQLSLICEMEPGLFRDCDTLLR---NLQGRLEILAVS 229
+ L EKL I S +N +L ++C ++PG FR+ D L+R +G LE+L++
Sbjct: 182 DGKKLKEKLKPLIKHIES-ENFDQELEIVCLIDPGCFREIDELIRCETKGKGTLEVLSLK 240
Query: 230 VHAEGD 235
EGD
Sbjct: 241 DVEEGD 246
>sp|Q6DIT8|SBDS_XENTR Ribosome maturation protein SBDS OS=Xenopus tropicalis GN=sbds PE=2
SV=1
Length = 250
Score = 221 bits (563), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 121/246 (49%), Positives = 165/246 (67%), Gaps = 15/246 (6%)
Query: 4 TLVQPVGQKRLTNVAVVRLKKHGMRFEIACYKNKVLSWRSQVEKDLDEVLQSHTVYSNVS 63
++ P Q RLTNVAVVR+KK G RFEIACYKNKV+SWRS EKDLDEVLQ+H+V+ NVS
Sbjct: 2 SIFTPTNQIRLTNVAVVRMKKGGKRFEIACYKNKVMSWRSGAEKDLDEVLQTHSVFMNVS 61
Query: 64 KGILAKSKDLIQHL-----------ILEKGELQVAGKERETQFSNQFRDIATIVMQKTVN 112
KG +AK +DL++ IL KGELQV+ KER TQ FRDIATIV K VN
Sbjct: 62 KGQVAKKEDLLKSFGTEDPTEICKQILSKGELQVSEKERSTQLEQMFRDIATIVADKCVN 121
Query: 113 SETQRPYTISMIERLMHEIHFAVDPNSSSKKQALEVIRELQKHFPIKRSPMRVGLTVPEQ 172
ET+RPYT+++IER M +IH++V S+K+QAL+VI++L++ I+R+ MR+ +P +
Sbjct: 122 PETKRPYTVNLIERAMKDIHYSVKATKSTKQQALDVIKQLKETMQIERAHMRLRFILPAK 181
Query: 173 NISSLMEKLDAWNASIVSKDNSGSQLSLICEMEPGLFRDCDTLLR---NLQGRLEILAVS 229
+ L EKL S +N +L ++C ++PG FR+ D L+R +G LE+L++
Sbjct: 182 DGKKLKEKLKPLIKHTES-ENFDQELEIVCLIDPGCFREIDELIRCETKGKGTLEVLSLK 240
Query: 230 VHAEGD 235
EGD
Sbjct: 241 DVEEGD 246
>sp|Q86KZ5|SBDS_DICDI Ribosome maturation protein SBDS OS=Dictyostelium discoideum
GN=sbds PE=3 SV=2
Length = 274
Score = 221 bits (562), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 110/252 (43%), Positives = 170/252 (67%), Gaps = 15/252 (5%)
Query: 4 TLVQPVGQKRLTNVAVVRLKKHGMRFEIACYKNKVLSWRSQVEKDLDEVLQSHTVYSNVS 63
++ PV K LTN+ VVR KK +FEIACY +KV S+RS++EKDL+EV+Q H +++NVS
Sbjct: 2 SIFTPVNNKTLTNIVVVRYKKGAAKFEIACYPSKVQSYRSKIEKDLNEVIQIHRIFTNVS 61
Query: 64 KGILAKSKDLIQH-----------LILEKGELQVAGKERETQFSNQFRDIATIVMQKTVN 112
KGI+AK +LI+ LILEKGELQV+ KER+ Q F+DIATIV +K VN
Sbjct: 62 KGIIAKKDELIKAFGTDNEQEIILLILEKGELQVSSKERDNQSEQTFKDIATIVAEKCVN 121
Query: 113 SETQRPYTISMIERLMHEIHFAVDPNSSSKKQALEVIRELQKHFPIKRSPMRVGLTVPEQ 172
+ETQRP +S+IE+ M ++H+++ P SSK+Q+LEVI+++ PI+R+ MR+ +T+P +
Sbjct: 122 TETQRPIPVSIIEKAMKDVHYSIHPTKSSKQQSLEVIKQISSVIPIQRAQMRLNITIPTK 181
Query: 173 NISSL-MEKLDAWNASIVSKDNSGSQLSLICEMEPGLFRDCDTLLRN---LQGRLEILAV 228
+L +KL + I +D G LS++C ++PG +R D L++ +G ++I+ +
Sbjct: 182 ESKTLNRDKLMVLVSKIEEEDRDGGGLSIVCLVDPGSYRKIDELIKQETKGKGFIDIINL 241
Query: 229 SVHAEGDTSVDH 240
+V EG+T ++
Sbjct: 242 AVAKEGETKINE 253
>sp|Q23202|SBDS_CAEEL Ribosome maturation protein SBDS OS=Caenorhabditis elegans
GN=sbds-1 PE=3 SV=2
Length = 253
Score = 205 bits (522), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 108/252 (42%), Positives = 162/252 (64%), Gaps = 14/252 (5%)
Query: 1 MSKTLVQPVGQKRLTNVAVVRLKKHGMRFEIACYKNKVLSWRSQVEKDLDEVLQSHTVYS 60
MSK + P QK LTNVAVVR+KK G RFEIACYKNKV++WR++ EKD+DEVLQ+HTV+S
Sbjct: 1 MSKNIKTPTNQKVLTNVAVVRMKKTGKRFEIACYKNKVVNWRNKSEKDIDEVLQTHTVFS 60
Query: 61 NVSKGILAKSKDLIQ-----------HLILEKGELQVAGKERETQFSNQFRDIATIVMQK 109
NVSKG L+K ++LI +IL+KG+LQV+ KER+ ++++ ++
Sbjct: 61 NVSKGQLSKKEELIAAFGIEDQLEICKIILDKGDLQVSEKERQAASDQSLKEVSQLIASM 120
Query: 110 TVNSETQRPYTISMIERLMHEIHFAVDPNSSSKKQALEVIRELQKHFPIKRSPMRVGLTV 169
VN ET+RP S+I++ + E+HF++ PN SSK+QAL+ I +L++ I+R+ M++ + +
Sbjct: 121 VVNPETKRPVPPSVIDKALQEMHFSLKPNRSSKQQALDAIPKLRETLKIERAKMKIRVAI 180
Query: 170 PEQNISSLMEKLDAWNASIVSKDNSGSQLSLICEMEPGLFRDCDTLLRNL---QGRLEIL 226
P + S+ KL + + D L ++ +EPG FR D L+RN GRLEIL
Sbjct: 181 PTKEAKSVHTKLKTLFSDVEVDDWQDGSLEMVGLIEPGSFRALDDLVRNETKGHGRLEIL 240
Query: 227 AVSVHAEGDTSV 238
++ EG+ +
Sbjct: 241 SLKDVVEGELQI 252
>sp|O14179|SDO1_SCHPO Ribosome maturation protein sdo1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=sdo1 PE=3 SV=1
Length = 246
Score = 165 bits (417), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 99/239 (41%), Positives = 149/239 (62%), Gaps = 17/239 (7%)
Query: 7 QPVGQKRLTNVAVVRLKKHGMRFEIACYKNKVLSWRSQVEKDLDEVLQSHTVYSNVSKGI 66
QPVGQ RLTNV+VV+ KK G RFE+ACYKNKV WR+++E DLDEVLQ H V++NVSKG
Sbjct: 5 QPVGQIRLTNVSVVKYKKGGKRFEVACYKNKVTEWRNKIETDLDEVLQIHNVFNNVSKGH 64
Query: 67 LAKSKDL--------IQHLILE---KGELQVAGKERETQFSNQFRDIATIVMQKTVNSET 115
+A +DL I +ILE KG+ QV KER Q S+ +RDI + V ++ +
Sbjct: 65 VASRQDLKKAFGTDDIDKIILEILQKGDFQVGEKERHHQMSSTYRDIVSHVTAMCMDPNS 124
Query: 116 QRPYTISMIERLMHEIHFAVDPNSSSKKQALEVIRELQK--HFPIKRSPMRVGLTVPEQN 173
+RPY S+IE+ + + F+V + ++K QALE I++LQ+ PI R+ MR+ + V +
Sbjct: 125 KRPYPASIIEKALSDCGFSVSTSKTAKSQALEAIKKLQEKNEIPIVRARMRIRIVVDVKQ 184
Query: 174 ISSLMEKLDAWNASIVSKDNSGSQLSLICEMEPGLFRDCDTLLRNL---QGRLEILAVS 229
+L E+L + A + ++N + I + PG ++ D L+RN +G +++L +S
Sbjct: 185 GKALRERLRSL-ADEIEEENIDDEYECIALVIPGNYKLIDELVRNETKNRGMVQVLDMS 242
>sp|Q07953|SDO1_YEAST Ribosome maturation protein SDO1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SDO1 PE=1 SV=1
Length = 250
Score = 135 bits (340), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 88/240 (36%), Positives = 139/240 (57%), Gaps = 17/240 (7%)
Query: 7 QPVGQKRLTNVAVVRLKKHGMRFEIACYKNKVLSWRSQVEKDLDEVLQSHTVYSNVSKGI 66
QP GQ +LTNV++VRLKK RFE+ACY+NKV +R +EKDLDEVLQ H V+ NVSKG+
Sbjct: 5 QPSGQIKLTNVSLVRLKKARKRFEVACYQNKVQDYRKGIEKDLDEVLQIHQVFMNVSKGL 64
Query: 67 LAKSKDL-----------IQHLILEKGELQVAGKERETQFSNQFRDIATIVMQKTVNSET 115
+A +DL + I+ KGE+Q++ KER+ + ++ TIV K +N +
Sbjct: 65 VANKEDLQKCFGTTNVDDVIEEIMHKGEIQLSEKERQLMLNKVNNEMLTIVSAKCINPVS 124
Query: 116 QRPYTISMIERLMHEIHFAVDPNSSSKKQALEVIREL--QKHFPIKRSPMRVGLTVPEQN 173
++ Y +MI + + E+ F+ N +K QALE I+ L ++ PI R+ M+V + + E +
Sbjct: 125 KKRYPPTMIHKALQELKFSPVINKPAKLQALEAIKLLVSKQIIPIVRAKMKVKVAISEPS 184
Query: 174 ISS-LMEKLDAWNASIVSKDNSGSQLSLICE--MEPGLFRDCDTLLRNLQGRLEILAVSV 230
L+EK+ AS + C ++P +RD TL + +G +++L ++V
Sbjct: 185 RQPELIEKISKLIASSPGESTKPELDPWTCTGLIDPVNYRDLMTLC-DKKGTVQVLDMAV 243
>sp|Q8SUL0|SDO1_ENCCU Ribosome maturation protein SDO1 OS=Encephalitozoon cuniculi
(strain GB-M1) GN=SDO1 PE=1 SV=1
Length = 223
Score = 74.3 bits (181), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 105/210 (50%), Gaps = 14/210 (6%)
Query: 5 LVQPVGQKRLTNVAVVRLKKHGMRFEIACYKNKVLSWRSQVEKDLDEVLQSHTVYSNVSK 64
+ P+ QK+L NV++V LKK G R+E+A Y NK+ +R+ + L E+LQ+ T+Y +VSK
Sbjct: 1 MFTPLNQKKLVNVSIVTLKKFGRRYELAVYPNKLYEYRNGMRTPLSEILQTDTIYRSVSK 60
Query: 65 GILAKSKDL---------IQHLILEKGELQVAGKERETQFSNQFRDIATIVMQKTVNSET 115
G +A+ DL I IL+ G Q + R + R+I I+ K
Sbjct: 61 GEIARQGDLDLFCRTHEEIVREILDCGYEQKSEATRVYEQEKTEREIVQILRNKVTRG-- 118
Query: 116 QRPYTISMIERLMHEIHFAVDPNSSSKKQALEVIRELQKHFPIKRSPMRVGLTVPEQNIS 175
R + + + + ++H N SKKQ+ E++ +L+K R +RV + + ++
Sbjct: 119 GRHLSEASLREAIGKVHNIYVGN--SKKQSQEILSKLEK-MGFDRVGVRVSVEMSDKVAE 175
Query: 176 SLMEKLDAWNASIVSKDNSGSQLSLICEME 205
+ + + + ++ + + + +CE E
Sbjct: 176 FVKQNGEIHDGYVMIRSDCFPRFKDMCEKE 205
>sp|Q58011|SDO1_METJA Ribosome maturation protein SDO1 homolog OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=MJ0592 PE=3 SV=1
Length = 240
Score = 73.6 bits (179), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 97/207 (46%), Gaps = 13/207 (6%)
Query: 14 LTNVAVVRLKKHGMRFEIACYKNKVLSWRSQVEKDLDEVLQSHTVYSNVSKG------IL 67
L + R HG +FEI + D DE+L V+ + SKG +L
Sbjct: 9 LEEAVIARYTSHGEKFEILVDPYLAAKLKEGQNVDFDELLAIEVVFRDASKGEKAPEELL 68
Query: 68 AK------SKDLIQHLILEKGELQVAGKERETQFSNQFRDIATIVMQKTVNSETQRPYTI 121
+K K++ + +IL KG++Q+ K+RE + R I TI+ + T+N +T P+
Sbjct: 69 SKIFGTTDVKEIAKKIIL-KGQVQLTAKQREEIREQKKRQIITIISRNTINPQTDTPHPP 127
Query: 122 SMIERLMHEIHFAVDPNSSSKKQALEVIRELQKHFPIKRSPMRVGLTVPEQNISSLMEKL 181
IE+ M E+ +D S+++Q E++++L+K PI+ + + +P + S L
Sbjct: 128 HRIEKAMEELRINIDIYKSAEEQVPEIVKKLKKVLPIRFEKRDIAVKIPAEFASKAYNAL 187
Query: 182 DAWNASIVSKDNSGSQLSLICEMEPGL 208
+ A + L ++ E+ G+
Sbjct: 188 YQFGAVKQEEWQPDGSLIVLIEIPSGI 214
>sp|Q9V121|SDO1_PYRAB Ribosome maturation protein SDO1 homolog OS=Pyrococcus abyssi
(strain GE5 / Orsay) GN=PYRAB06080 PE=3 SV=1
Length = 236
Score = 67.8 bits (164), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 80/168 (47%), Gaps = 11/168 (6%)
Query: 19 VVRLKKHGMRFEIACYKNKVLSWRSQVEKDLDEVLQSHTVYSNVSKGILAKSKDL----- 73
+ RLK HG FEI ++ E ++E+L + V+ + KG A K++
Sbjct: 10 IARLKVHGETFEILVDPYLARDFKEGKEVPIEEILATPYVFKDAHKGDKASEKEMEKIFG 69
Query: 74 ------IQHLILEKGELQVAGKERETQFSNQFRDIATIVMQKTVNSETQRPYTISMIERL 127
+ +IL KGE+Q+ ++R + R IATI+ + V+ T P+ + I R
Sbjct: 70 TSDPYEVAKIILRKGEVQLTAQQRREMLEEKKRQIATIIHRHAVDPRTGYPHPVDRILRA 129
Query: 128 MHEIHFAVDPNSSSKKQALEVIRELQKHFPIKRSPMRVGLTVPEQNIS 175
M E+ VD ++ Q +VI+ +++ P++ + + +P + +
Sbjct: 130 MEEVGVRVDIFKDAEAQVQDVIKAIRRILPLRIEMKVIAVKIPSEYVG 177
>sp|Q9YCU5|SDO1_AERPE Ribosome maturation protein SDO1 homolog OS=Aeropyrum pernix
(strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138
/ K1) GN=APE_1167.1 PE=3 SV=2
Length = 233
Score = 65.5 bits (158), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 77/152 (50%), Gaps = 11/152 (7%)
Query: 19 VVRLKKHGMRFEIACYKNKVLSWRSQVEKDLDEVLQSHTVYSNVSKGILAKSKDL----- 73
V ++ G RFEI ++ + + DL++VL + T+Y +V KG+ A +++
Sbjct: 9 VAWMEVRGKRFEILVRPELAFRYKEKGDVDLEDVLWTDTIYRDVRKGLKASPEEVKKAFG 68
Query: 74 ------IQHLILEKGELQVAGKERETQFSNQFRDIATIVMQKTVNSETQRPYTISMIERL 127
+ IL++GE+Q+ ++R + R I + + + ++ T RP + IE
Sbjct: 69 TSDPRRVAEKILKEGEIQLTEEQRRRLLEAKRRQIISYIARNAIDPTTGRPIPEARIEAA 128
Query: 128 MHEIHFAVDPNSSSKKQALEVIRELQKHFPIK 159
+ E+ F ++ ++ QA+E +R + + PI+
Sbjct: 129 LEEVRFPINLWRDAESQAVEAVRLIARVMPIR 160
>sp|O29759|SDO1_ARCFU Ribosome maturation protein SDO1 homolog OS=Archaeoglobus fulgidus
(strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC
100126) GN=AF_0491 PE=1 SV=1
Length = 234
Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/216 (22%), Positives = 94/216 (43%), Gaps = 15/216 (6%)
Query: 14 LTNVAVVRLKKHGMRFEIACYKNKVLSWRSQVEKDLDEVLQSHTVYSNVSKGILAKSKDL 73
L + RL+K G FE+ + E + +++L + V+ + KG A +L
Sbjct: 4 LDKAVIARLRKGGEEFEVLVDPYLARDLKEGKEVNFEDLLAAEEVFKDAKKGERASVDEL 63
Query: 74 -----------IQHLILEKGELQVAGKERETQFSNQFRDIATIVMQKTVNSETQRPYTIS 122
I I+ +GE+Q+ ++R + + I + + T++ T P+ S
Sbjct: 64 RKIFGTDDVFEIARKIILEGEVQITAEQRREMLEAKRKQIINFISRNTIDPRTNAPHPPS 123
Query: 123 MIERLMHEIHFAVDPNSSSKKQALEVIRELQKHFPIKRSPMRVGLTVPEQNISSLMEKLD 182
IER + E +D S + Q ++++ L+ P+K M + + +P ++ + L
Sbjct: 124 RIERALEEAKVHIDIFKSVEAQVKDIVKALKPILPLKFEEMEIAIKIPPEHTGRAISAL- 182
Query: 183 AWNASIVSKDNSGSQLSLICEME--PGLFRDCDTLL 216
+N V+++ S IC M G++ D LL
Sbjct: 183 -YNFGGVTREEWQRDGSWICVMRIPSGMYGDLMDLL 217
>sp|O59220|SDO1_PYRHO Ribosome maturation protein SDO1 homolog OS=Pyrococcus horikoshii
(strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139
/ OT-3) GN=PH1552 PE=3 SV=1
Length = 236
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/201 (23%), Positives = 93/201 (46%), Gaps = 14/201 (6%)
Query: 19 VVRLKKHGMRFEIACYKNKVLSWRSQVEKDLDEVLQSHTVYSNVSKGILAKSKDL----- 73
+ RLK G FEI ++ ++E+L + V+ + KG A K++
Sbjct: 10 IARLKIQGETFEILVDPYLARDFKEGKNVPIEEILATPYVFKDAHKGDKASEKEMEKIFG 69
Query: 74 ------IQHLILEKGELQVAGKERETQFSNQFRDIATIVMQKTVNSETQRPYTISMIERL 127
+ +IL+KGE+Q+ ++R + R IATI+ + V+ T P+ + I R
Sbjct: 70 TSDPYEVAKIILKKGEVQLTAQQRREMLEEKKRQIATIIHKHAVDPRTGYPHPVDRILRA 129
Query: 128 MHEIHFAVDPNSSSKKQALEVIRELQKHFPIKRSPMRVGLTVPEQNISSLMEKLDAWNAS 187
M E+ VD ++ Q +VI+ L++ P++ + + +P + + ++ +
Sbjct: 130 MEEVGVRVDIFKDAEAQVQDVIKALRRVLPLRIEMKVIAVKIPGEYVGRSYGEVRKFGR- 188
Query: 188 IVSKDNSGSQLSLICEME-PG 207
+ K+ GS S + +E PG
Sbjct: 189 -IKKEEWGSDGSWMFLIEIPG 208
>sp|O26781|SDO1_METTH Ribosome maturation protein SDO1 homolog OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=MTH_685 PE=1 SV=1
Length = 232
Score = 58.5 bits (140), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/175 (22%), Positives = 80/175 (45%), Gaps = 12/175 (6%)
Query: 14 LTNVAVVRLKKHGMRFEIACYKNKVLSWRSQ-VEKDLDEVLQSHTVYSNVSKGILAKSKD 72
L + + RL+ HG RFE+ + +R + + +++VL V+ + KG A +
Sbjct: 4 LEDAVIARLESHGERFEVLVDPDLAAEFRREDSDVSVEDVLAVQEVFRDARKGDKASEEA 63
Query: 73 L-----------IQHLILEKGELQVAGKERETQFSNQFRDIATIVMQKTVNSETQRPYTI 121
+ + +IL +G +Q+ ++R ++ I + ++ +N + P+
Sbjct: 64 MRKVFETADPLEVTPVILRRGTIQLTAEQRRQMIEDKRLKIINKIAREAINPQNGLPHPP 123
Query: 122 SMIERLMHEIHFAVDPNSSSKKQALEVIRELQKHFPIKRSPMRVGLTVPEQNISS 176
IE+ M E VDP + +Q V++ ++ PIK +RV + +P + S
Sbjct: 124 KRIEKAMEEARVHVDPFKTVDEQVNIVLKAIRTKIPIKFEKVRVAIKIPGERAGS 178
>sp|O59811|YJVF_SCHPO Zinc finger protein C550.15c OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=SPCC550.15c PE=1 SV=1
Length = 463
Score = 52.0 bits (123), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 27/40 (67%)
Query: 287 CSTCNAYVGDAKQYRDHFKSDWHKHNLKRKTRQLPPLTVE 326
C+TC +A+ + H+KSDWH +NLKRK LPPL+ E
Sbjct: 7 CTTCTVAFNNAESQKIHWKSDWHHYNLKRKVASLPPLSAE 46
>sp|Q90Y35|ZN622_CHICK Zinc finger protein 622 OS=Gallus gallus GN=ZNF622 PE=2 SV=1
Length = 405
Score = 52.0 bits (123), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 26/40 (65%)
Query: 287 CSTCNAYVGDAKQYRDHFKSDWHKHNLKRKTRQLPPLTVE 326
C TC DA R H+K+DWH++NLKRK +PP+T E
Sbjct: 6 CITCRVAFKDADIQRAHYKTDWHRYNLKRKVADMPPVTAE 45
>sp|Q7TM96|ZN622_RAT Zinc finger protein 622 OS=Rattus norvegicus GN=Znf622 PE=2 SV=2
Length = 386
Score = 49.3 bits (116), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 26/40 (65%)
Query: 287 CSTCNAYVGDAKQYRDHFKSDWHKHNLKRKTRQLPPLTVE 326
C TC DA+ R H+K+DWH++NL+RK + P+T E
Sbjct: 6 CITCRVAFRDAEMQRAHYKTDWHRYNLRRKVANMAPVTAE 45
>sp|Q969S3|ZN622_HUMAN Zinc finger protein 622 OS=Homo sapiens GN=ZNF622 PE=1 SV=1
Length = 477
Score = 48.9 bits (115), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 25/40 (62%)
Query: 287 CSTCNAYVGDAKQYRDHFKSDWHKHNLKRKTRQLPPLTVE 326
C TC DA R H+K+DWH++NL+RK + P+T E
Sbjct: 6 CITCRVAFRDADMQRAHYKTDWHRYNLRRKVASMAPVTAE 45
>sp|P38344|REI1_YEAST Pre-60S factor REI1 OS=Saccharomyces cerevisiae (strain ATCC 204508
/ S288c) GN=REI1 PE=1 SV=3
Length = 393
Score = 48.5 bits (114), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 27/40 (67%)
Query: 287 CSTCNAYVGDAKQYRDHFKSDWHKHNLKRKTRQLPPLTVE 326
C++C + + R H KSDWH++NLKR+ QLPP++ E
Sbjct: 9 CNSCVLTFDSSDEQRAHMKSDWHRYNLKRRVAQLPPISFE 48
>sp|Q91VY9|ZN622_MOUSE Zinc finger protein 622 OS=Mus musculus GN=Znf622 PE=2 SV=1
Length = 476
Score = 48.5 bits (114), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 26/40 (65%)
Query: 287 CSTCNAYVGDAKQYRDHFKSDWHKHNLKRKTRQLPPLTVE 326
C TC DA+ R H+K+DWH++NL+RK + P+T E
Sbjct: 6 CITCRVAFRDAELQRAHYKTDWHRYNLRRKVAAMAPVTAE 45
>sp|Q66H85|ANKZ1_RAT Ankyrin repeat and zinc finger domain-containing protein 1
OS=Rattus norvegicus GN=Ankzf1 PE=2 SV=1
Length = 722
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Query: 287 CSTCNAYVGDAKQYRDHFKSDWHKHNLKRKTRQLPPLTVEECLADMELDDSKADLKEYS 345
CS C+ + ++ R+H+K DWH+ NLK++ + P L+ +D E S+ DL S
Sbjct: 72 CSACDQVFQNHQEQREHYKLDWHRFNLKQRLKNKPLLSA----SDFERQSSRGDLSSIS 126
>sp|Q9H8Y5|ANKZ1_HUMAN Ankyrin repeat and zinc finger domain-containing protein 1 OS=Homo
sapiens GN=ANKZF1 PE=1 SV=1
Length = 726
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Query: 287 CSTCNAYVGDAKQYRDHFKSDWHKHNLKRKTRQLPPLTVEECLADMELDDSKADLKEYS 345
CSTC+ + ++ R+H+K DWH+ NLK++ + P L+ D E S DL S
Sbjct: 74 CSTCDQTFQNHQEQREHYKLDWHRFNLKQRLKDKPLLSA----LDFEKQSSTGDLSSIS 128
>sp|Q58CQ5|ANKZ1_BOVIN Ankyrin repeat and zinc finger domain-containing protein 1 OS=Bos
taurus GN=ANKZF1 PE=2 SV=2
Length = 728
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Query: 287 CSTCNAYVGDAKQYRDHFKSDWHKHNLKRKTRQLPPLTVEECLADMELDDSKADL 341
CSTC+ + ++ R+H+K DWH+ NLK++ + P L+ D E S DL
Sbjct: 74 CSTCDQVFQNHQEQREHYKLDWHRFNLKQRLKDKPLLSA----LDFEKQSSTGDL 124
>sp|Q80UU1|ANKZ1_MOUSE Ankyrin repeat and zinc finger domain-containing protein 1 OS=Mus
musculus GN=Ankzf1 PE=2 SV=2
Length = 748
Score = 42.0 bits (97), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Query: 287 CSTCNAYVGDAKQYRDHFKSDWHKHNLKRKTRQLPPLTVEECLADMELDDSKADL 341
CS C+ + ++ R+H+K DWH+ NLK++ + P L+ +D E S DL
Sbjct: 98 CSACDQIFQNHQEQREHYKLDWHRFNLKQRLKNKPLLSA----SDFEQQSSTGDL 148
>sp|Q06709|REH1_YEAST Zinc finger protein REH1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=REH1 PE=1 SV=1
Length = 432
Score = 40.8 bits (94), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Query: 287 CSTCNAYVGDAKQYRDHFKSDWHKHNLKRKTRQLPPLTVEECLADMELDD---SKADLKE 343
C+ C + R H K++WH++NLKR+ LPP+ E+ +++ + ++ + E
Sbjct: 8 CNCCVIQFKTSDLQRYHMKTEWHRYNLKRRIANLPPIGAEQFAEKLQISEKEQAENQVDE 67
Query: 344 YSF 346
+ F
Sbjct: 68 FGF 70
>sp|O74977|VMS1_SCHPO VMS1 homolog C1827.04 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=SPCC1827.04 PE=1 SV=1
Length = 600
Score = 39.3 bits (90), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Query: 287 CSTCNAYVGDAKQYRDHFKSDWHKHNLKRKTRQLPPLTVEECLADME 333
C N + D + + H KSDWH+ N KRK +LPP++ +E + +E
Sbjct: 57 CQIDNLHTLDER--KSHIKSDWHRFNTKRKITKLPPVSQDEFESIIE 101
>sp|Q6Q2C2|HYES_PIG Bifunctional epoxide hydrolase 2 OS=Sus scrofa GN=EPHX2 PE=2 SV=1
Length = 555
Score = 36.6 bits (83), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 48/105 (45%), Gaps = 3/105 (2%)
Query: 138 NSSSKKQALEVIRELQKHFPIKRSPMRVGLTVPEQNISSLM-EKLDAWNASIVSKDNSGS 196
+S+ + +++ EL+ HF RVG+ P+ I LM + L A +V D+ G+
Sbjct: 129 DSAQRGSRAQLMCELRPHFDFLIESCRVGMAKPDPQIYKLMLDTLKAEPNEVVFLDDVGT 188
Query: 197 QLSLI--CEMEPGLFRDCDTLLRNLQGRLEILAVSVHAEGDTSVD 239
L + M L RD DT LR L+ + + A TS D
Sbjct: 189 HLKPVRDLGMATILVRDTDTALRELEKVTGVQLLQTPALPPTSCD 233
>sp|Q04311|VMS1_YEAST Protein VMS1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=VMS1 PE=1 SV=1
Length = 632
Score = 36.2 bits (82), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 286 KCSTCNAYVGDAKQYRDHFKSDWHKHNLKRKTRQLPPLTVEE 327
+CS C + + H+++D+H N+KR R L L+VEE
Sbjct: 73 RCSVCQMSFDSRNEQKAHYQTDYHLMNVKRNLRGLDILSVEE 114
>sp|Q74ZJ5|SEN54_ASHGO tRNA-splicing endonuclease subunit SEN54 OS=Ashbya gossypii (strain
ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056)
GN=SEN54 PE=3 SV=1
Length = 455
Score = 33.5 bits (75), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 39/203 (19%), Positives = 74/203 (36%), Gaps = 50/203 (24%)
Query: 127 LMHEIHFAVDPNSSSKKQALEVIRELQKHFPIKRSPMRVGLTVPEQNISSLMEKLDAWNA 186
L H +HF + +SS ++ EL +H P K+ P + E+N L + W
Sbjct: 232 LYHPLHFLLHRYTSSP----QLYEELSQHIPFKKVPHDINELREERNNGILNPNVKQWKI 287
Query: 187 S-----------------------IVSKDNSGSQLSLICEMEPGLFRDCDTLLRNLQGRL 223
+ + +KDN+G Q E FR ++ L R
Sbjct: 288 AFNVWKPKSSFKKKTPGLPDFQVVVYNKDNAGQQFPTYDE-----FR---SIFHRLDYRF 339
Query: 224 EILAVSVHAEGDTSVDHYDDHEDVPSLPPKESADDVLKLSEKIEKQSLSSGNGNTEGKVK 283
+ L E D +DD+ +P +E +++ ++ ++ G +
Sbjct: 340 DFL-----NELDVDDSAWDDYTYTDGMPTREF----------MQRNKIAPSQPHSGGDSR 384
Query: 284 QNKCSTCNAYVGDAKQYRDHFKS 306
+ K T ++ ++ + FKS
Sbjct: 385 KKKARTYPQHIAQIRRLKSGFKS 407
>sp|O70320|PLB1_CAVPO Phospholipase B1, membrane-associated OS=Cavia porcellus GN=PLB1
PE=1 SV=1
Length = 1463
Score = 33.5 bits (75), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 58/126 (46%), Gaps = 25/126 (19%)
Query: 139 SSSKKQALE--VIRELQKHFPIKRSPMRVGLTVPEQNISSLME---KLDAWNASIVSKDN 193
+SS K LE + E +K+FP SP ++GL +P +++ +L KL A + + +
Sbjct: 24 TSSGKSTLEGQLWPETKKNFPFSCSPKKLGLNMPSESVHTLTPADIKLIAAIGDMETPPD 83
Query: 194 SGS---QLSLICEMEPGLFRDCDTLLRNLQGRLEILAVSVHAEGDTSVDHYDDHEDVPSL 250
SG+ S E EP +R C G + +L+ + H++ +P+
Sbjct: 84 SGAVNLDTSERTEKEP--WRGC-------MGMMTVLS--------DIISHFNPSVLLPTC 126
Query: 251 PPKESA 256
PP SA
Sbjct: 127 PPWRSA 132
>sp|Q0VD35|ZMAT4_BOVIN Zinc finger matrin-type protein 4 OS=Bos taurus GN=ZMAT4 PE=2 SV=1
Length = 229
Score = 31.6 bits (70), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 276 GNTEGKVKQNKCSTCNAYVGDAKQYRDHFKSDWHKHNLKRK 316
G G + +C+TC+ + +QY H K H+ NLK K
Sbjct: 189 GELRGLRRNYRCTTCSVSLNSIEQYHAHLKGSKHQTNLKNK 229
>sp|O16140|TOP2_BOMMO DNA topoisomerase 2 OS=Bombyx mori GN=TOP2 PE=2 SV=1
Length = 1547
Score = 31.6 bits (70), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 52/120 (43%), Gaps = 21/120 (17%)
Query: 206 PGLFRDCDTLLRNLQG------RLEILAVSVHAEGDTSVDHYDDHEDVPSLPPKESADDV 259
PGL++ D +L N +++++ + ++ E +T + Y++ +P + K D+
Sbjct: 87 PGLYKIYDEILVNAADNKQRDPKMDVIKIDINQETNT-ISVYNNGSGIPVVMHK---DEK 142
Query: 260 LKLSEKIEKQSLSSGNGNTE-----GKVKQNKCSTCNAYVGD------AKQYRDHFKSDW 308
+ + I L+S N N E G CN + +KQY+ HFK W
Sbjct: 143 MYVPTMIFGHLLTSSNYNDEEEKVTGGRNGYGAKLCNIFSTKFTVETASKQYKKHFKQTW 202
>sp|P34511|VMS1_CAEEL Protein vms-1 OS=Caenorhabditis elegans GN=vms-1 PE=2 SV=2
Length = 618
Score = 31.6 bits (70), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 7/60 (11%)
Query: 285 NKCSTCNAYV--GDAKQYRDHFKSDWHKHNLKRKTRQLPPLTVEECLADME-LDDSKADL 341
++C+TCN V GD +H++S +H+ N RK R + T E D E +++S+ DL
Sbjct: 59 DQCTTCNCPVDFGDRAVLLEHYQSLFHRTNTLRKARNMTVYTEE----DFEGIENSENDL 114
>sp|Q9X1K8|DAPB_THEMA 4-hydroxy-tetrahydrodipicolinate reductase OS=Thermotoga maritima
(strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099)
GN=dapB PE=1 SV=1
Length = 216
Score = 31.6 bits (70), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 138 NSSSKKQALEVIRELQKHFPIKRS-PMRVGLTVPEQNISSLMEKLDAWNASIV 189
++ K++ L+++REL K P+ ++ +G+ V ++ +S L++ L+ W+ IV
Sbjct: 72 TTALKEEHLQMLRELSKEVPVVQAYNFSIGINVLKRFLSELVKVLEDWDVEIV 124
>sp|B1LBR0|DAPB_THESQ 4-hydroxy-tetrahydrodipicolinate reductase OS=Thermotoga sp.
(strain RQ2) GN=dapB PE=3 SV=1
Length = 216
Score = 31.6 bits (70), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 138 NSSSKKQALEVIRELQKHFPIKRS-PMRVGLTVPEQNISSLMEKLDAWNASIV 189
++ K++ L+++REL K P+ ++ +G+ V ++ +S L++ L+ W+ IV
Sbjct: 72 TTALKEEHLQMLRELSKEVPVVQAYNFSIGINVLKRFLSELVKVLEDWDVEIV 124
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.130 0.366
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 123,457,167
Number of Sequences: 539616
Number of extensions: 4998459
Number of successful extensions: 12542
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 46
Number of HSP's that attempted gapping in prelim test: 12455
Number of HSP's gapped (non-prelim): 109
length of query: 346
length of database: 191,569,459
effective HSP length: 118
effective length of query: 228
effective length of database: 127,894,771
effective search space: 29160007788
effective search space used: 29160007788
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 62 (28.5 bits)