Query 042020
Match_columns 538
No_of_seqs 273 out of 875
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 13:10:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042020.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042020hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03000 NPH3: NPH3 family; I 100.0 5.1E-84 1.1E-88 646.4 20.1 228 190-418 1-258 (258)
2 KOG4441 Proteins containing BT 100.0 9.7E-29 2.1E-33 274.0 17.3 231 2-294 34-264 (571)
3 PHA02713 hypothetical protein; 99.9 1.6E-27 3.5E-32 264.0 14.5 224 2-290 23-248 (557)
4 PHA02790 Kelch-like protein; P 99.9 3.1E-26 6.7E-31 249.5 13.3 201 2-267 20-222 (480)
5 PHA03098 kelch-like protein; P 99.9 3.3E-24 7.1E-29 235.3 16.4 224 2-291 7-237 (534)
6 PF00651 BTB: BTB/POZ domain; 99.7 1.1E-16 2.3E-21 139.0 11.6 100 2-112 8-110 (111)
7 smart00225 BTB Broad-Complex, 99.6 1.3E-15 2.9E-20 124.7 8.4 90 6-106 1-90 (90)
8 KOG4350 Uncharacterized conser 99.4 1.5E-12 3.2E-17 135.6 12.4 209 2-276 42-253 (620)
9 KOG2075 Topoisomerase TOP1-int 99.3 5E-11 1.1E-15 126.8 13.1 179 2-231 112-294 (521)
10 KOG4591 Uncharacterized conser 98.8 1.7E-08 3.6E-13 97.4 8.3 115 2-139 64-183 (280)
11 KOG4682 Uncharacterized conser 98.5 4.5E-07 9.7E-12 95.3 8.4 125 3-151 68-194 (488)
12 KOG0783 Uncharacterized conser 98.3 7.6E-07 1.7E-11 100.0 5.5 65 1-68 555-631 (1267)
13 KOG0783 Uncharacterized conser 98.2 1.6E-06 3.5E-11 97.5 5.5 131 5-153 711-849 (1267)
14 PF11822 DUF3342: Domain of un 97.9 1.1E-05 2.4E-10 83.5 5.6 87 15-113 14-104 (317)
15 smart00512 Skp1 Found in Skp1 97.2 0.0012 2.7E-08 57.7 7.7 83 6-91 3-104 (104)
16 KOG2716 Polymerase delta-inter 96.6 0.013 2.8E-07 58.7 9.6 96 7-113 7-105 (230)
17 PF02214 BTB_2: BTB/POZ domain 96.5 0.0023 5.1E-08 54.6 3.1 83 7-93 1-88 (94)
18 KOG3473 RNA polymerase II tran 96.4 0.012 2.7E-07 51.1 7.1 81 7-90 19-111 (112)
19 PF03931 Skp1_POZ: Skp1 family 95.9 0.041 8.9E-07 43.8 7.4 57 7-68 3-59 (62)
20 PF07707 BACK: BTB And C-termi 95.7 0.0011 2.4E-08 56.6 -2.6 69 194-270 34-102 (103)
21 KOG2838 Uncharacterized conser 95.7 0.013 2.8E-07 59.7 4.6 66 3-72 129-196 (401)
22 smart00875 BACK BTB And C-term 94.8 0.041 9E-07 46.2 4.3 65 195-268 35-99 (101)
23 KOG1724 SCF ubiquitin ligase, 94.2 0.24 5.2E-06 47.3 8.5 98 7-115 7-129 (162)
24 KOG2838 Uncharacterized conser 89.8 0.39 8.5E-06 49.3 4.3 56 16-75 262-329 (401)
25 KOG0511 Ankyrin repeat protein 81.0 2 4.2E-05 46.2 4.4 75 15-93 301-379 (516)
26 KOG2714 SETA binding protein S 77.1 7.2 0.00016 42.6 7.2 83 7-93 13-99 (465)
27 PF01466 Skp1: Skp1 family, di 72.9 3.2 6.9E-05 34.5 2.7 35 73-114 10-44 (78)
28 COG5201 SKP1 SCF ubiquitin lig 65.7 39 0.00084 31.4 8.2 115 6-145 3-142 (158)
29 KOG0511 Ankyrin repeat protein 65.2 2.1 4.5E-05 45.9 0.0 59 5-68 150-209 (516)
30 PF08581 Tup_N: Tup N-terminal 64.0 10 0.00022 32.1 3.9 25 493-517 39-63 (79)
31 PF04508 Pox_A_type_inc: Viral 59.6 12 0.00025 24.5 2.6 18 494-511 2-19 (23)
32 KOG1665 AFH1-interacting prote 56.1 38 0.00082 34.3 6.9 89 7-107 11-105 (302)
33 PF14363 AAA_assoc: Domain ass 55.3 7 0.00015 34.0 1.6 42 371-413 30-71 (98)
34 TIGR01834 PHA_synth_III_E poly 54.2 15 0.00032 38.9 4.0 30 492-521 288-317 (320)
35 PF01166 TSC22: TSC-22/dip/bun 52.4 31 0.00067 27.6 4.5 33 484-516 12-44 (59)
36 KOG3840 Uncharaterized conserv 47.0 43 0.00092 35.4 5.9 82 7-92 98-185 (438)
37 KOG1987 Speckle-type POZ prote 43.9 13 0.00029 37.9 1.8 89 15-113 110-201 (297)
38 PF14077 WD40_alt: Alternative 39.1 20 0.00043 27.3 1.6 19 496-514 14-32 (48)
39 PF10473 CENP-F_leu_zip: Leuci 35.9 50 0.0011 31.0 4.0 36 483-518 77-112 (140)
40 PF10929 DUF2811: Protein of u 33.3 29 0.00064 27.6 1.8 19 380-398 8-26 (57)
41 COG2433 Uncharacterized conser 32.9 51 0.0011 37.7 4.2 165 335-517 300-467 (652)
42 PF10932 DUF2783: Protein of u 30.9 39 0.00084 27.2 2.1 22 379-403 10-31 (60)
43 KOG4196 bZIP transcription fac 30.2 1E+02 0.0022 28.6 5.0 56 483-538 78-135 (135)
44 PF08776 VASP_tetra: VASP tetr 29.6 99 0.0022 22.9 3.8 14 489-502 14-27 (40)
45 COG3510 CmcI Cephalosporin hyd 29.4 40 0.00086 33.6 2.3 34 368-401 183-218 (237)
46 KOG4571 Activating transcripti 29.3 63 0.0014 33.8 3.9 42 482-523 251-292 (294)
47 PF07407 Seadorna_VP6: Seadorn 28.6 60 0.0013 34.5 3.6 28 483-510 36-63 (420)
48 PRK15322 invasion protein OrgB 27.4 1.5E+02 0.0032 29.7 5.8 81 314-394 90-204 (210)
49 TIGR02894 DNA_bind_RsfA transc 27.2 1E+02 0.0022 29.6 4.6 32 486-517 118-149 (161)
50 KOG3713 Voltage-gated K+ chann 26.9 2.4E+02 0.0051 31.7 7.9 90 6-107 32-134 (477)
51 KOG2715 Uncharacterized conser 26.9 1.9E+02 0.0041 28.2 6.3 96 7-113 23-122 (210)
52 PHA01750 hypothetical protein 25.5 1.2E+02 0.0026 24.9 4.0 34 485-518 41-74 (75)
53 PLN03205 ATR interacting prote 25.5 69 0.0015 35.2 3.5 39 486-524 134-172 (652)
54 PF07716 bZIP_2: Basic region 25.3 1.5E+02 0.0033 22.7 4.5 30 490-519 22-51 (54)
55 PF11123 DNA_Packaging_2: DNA 25.2 45 0.00098 28.1 1.6 16 380-395 31-46 (82)
56 PF11365 DUF3166: Protein of u 24.1 1.2E+02 0.0026 26.7 4.1 36 485-520 7-42 (96)
57 PF08172 CASP_C: CASP C termin 22.7 79 0.0017 32.3 3.2 32 485-516 92-123 (248)
58 KOG4603 TBP-1 interacting prot 22.3 1.2E+02 0.0025 29.6 4.0 39 485-523 106-146 (201)
59 PF15294 Leu_zip: Leucine zipp 21.3 1.2E+02 0.0026 31.6 4.2 36 484-519 130-165 (278)
60 PF13075 DUF3939: Protein of u 20.9 75 0.0016 29.8 2.3 43 312-355 76-122 (140)
61 PF00170 bZIP_1: bZIP transcri 20.3 1.9E+02 0.0041 22.8 4.3 29 487-515 34-62 (64)
No 1
>PF03000 NPH3: NPH3 family; InterPro: IPR004249 The RPT2 protein is a signal transducer of the phototropic response in Arabidopsis thaliana. The RPT2 gene is light inducible; encodes a novel protein with putative phosphorylation sites, a nuclear localization signal, a BTB/POZ domain (IPR000210 from INTERPRO), and a coiled-coil domain. RPT2 belongs to a large gene family that includes the recently isolated NPH3 gene []. The NPH3 protein is a NPH1 photoreceptor-interacting protein that is essential for phototropism. Phototropism of A. thaliana seedlings in response to a blue light source is initiated by nonphototropic hypocotyl 1 (NPH1), a light-activated serine-threonine protein kinase []. NPH3 is a member of a large protein family, apparently specific to higher plants, and may function as an adapter or scaffold protein to bring together the enzymatic components of a NPH1-activated phosphorelay []. Many of the proteins in this group also contain the BTB/POZ domain (IPR000210 from INTERPRO) at the N-terminal.; GO: 0004871 signal transducer activity, 0009416 response to light stimulus
Probab=100.00 E-value=5.1e-84 Score=646.40 Aligned_cols=228 Identities=47% Similarity=0.772 Sum_probs=217.6
Q ss_pred CccchhhcccCChhHHHHHHHHHhhcCCChHHHHHHHHhhhhhcCCCc----------------chHHHhHHHHHHHHhh
Q 042020 190 RRWWFEDLMFLNVDFVDKVSKMMITQNFEHDLICKFLLHYRKSRFCSA----------------SQVEKCKMTEVVINLL 253 (538)
Q Consensus 190 ~~WW~EDl~~L~~d~~~rvI~am~~~g~~~e~I~~aL~~Yak~~l~~~----------------~~~~~r~LLE~Vv~lL 253 (538)
+||||||++.|++++|+|||.+|+++|+++++|+++|++||++|+|+. ...++|.+||+||+||
T Consensus 1 ~dWW~eDl~~L~id~f~rvi~a~~~~~~~~~~I~~~l~~Ya~k~l~~~~~~~~~~~~~~~~~~~~~~~~r~llEtiV~lL 80 (258)
T PF03000_consen 1 KDWWFEDLSELSIDLFKRVISAMKSKGMKPEVIGEALMHYAKKWLPGLSRSSSGSSSSAESSTSSENEQRELLETIVSLL 80 (258)
T ss_pred CCccHHHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcccccccccccccccchhHHHHHHHHHHHHHhC
Confidence 489999999999999999999999999999999999999999999987 4678999999999999
Q ss_pred cccCCCCCChhhHHHHHHHhhhcccCHHHHHHHHHHHhccccccCcccccccC-CCCCCccchhHHHHHHHHHHHhccc-
Q 042020 254 SLLDRSTPSCKSLFNIFHVALSLKISRIYRKKLESLIGSQLDQATLDYLLVPS-PCGKDYIYDVSLVLRLVKVFLFENR- 331 (538)
Q Consensus 254 p~~~~~~vs~~fL~~LLr~a~~l~as~~cr~~LE~rIg~qLd~AtldDLLips-~~~~~~~ydvd~v~ri~~~Fl~~~~- 331 (538)
|+ +++++||+|||+|||+|+++++|..||.+||+|||.|||||||||||||+ +++.+|+||||+|+|||++|+.+.+
T Consensus 81 P~-e~~svsc~FL~~LLr~A~~l~as~~cr~~Le~rIg~qLd~AtldDLLIP~~~~~~~t~yDVd~V~riv~~Fl~~~~~ 159 (258)
T PF03000_consen 81 PP-EKGSVSCSFLFRLLRAAIMLGASSACRNELERRIGSQLDQATLDDLLIPSSPSGEDTLYDVDLVQRIVEHFLSQEEE 159 (258)
T ss_pred CC-CCCcccHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhhccHHHhcccCCCCcccchhhHHHHHHHHHHHHhcccc
Confidence 76 99999999999999999999999999999999999999999999999999 4466699999999999999998731
Q ss_pred ------------cccchhHHHHHHhhhhhhhhhccCCCCCChhHHHHHHHhcCCccccccchhhHHHHHHHHhcCCCCHH
Q 042020 332 ------------SWLSMSRLNKVAGLVDSYLAEVSPDSHLKPSKFVALLKVLPDFTRQSHDGLYHTMDMYLQVHAGLCEE 399 (538)
Q Consensus 332 ------------~~~~~~~~~~VakLvD~yLaEiA~D~~L~~~kF~~Lae~lP~~aR~~~DgLYrAIDiyLk~Hp~ls~~ 399 (538)
...+.+++.+||||||+||+|||+|+||+|+||++|||++|++||++|||||||||||||+||+||++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~VakLvD~YLaEiA~D~~L~~~kF~~Lae~lP~~aR~~hD~LYrAID~YLk~Hp~ls~~ 239 (258)
T PF03000_consen 160 AGEEEESESESGSSPSSSSLVKVAKLVDGYLAEIAPDPNLKPSKFVALAEALPDSARPSHDGLYRAIDIYLKAHPGLSEE 239 (258)
T ss_pred cccccccccccccCCChHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHCCHhhhhccchHHHHHHHHHHHcccCCHH
Confidence 24567899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhccccccccCCHHHH
Q 042020 400 EKLRVCSALKYEKLSADAL 418 (538)
Q Consensus 400 Er~~lC~~ldc~KLS~eac 418 (538)
||++||++|||||||+|||
T Consensus 240 Er~~lC~~ldc~KLS~EAC 258 (258)
T PF03000_consen 240 ERKRLCRLLDCQKLSPEAC 258 (258)
T ss_pred HHHHHHhhCCcccCCcccC
Confidence 9999999999999999998
No 2
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.96 E-value=9.7e-29 Score=274.04 Aligned_cols=231 Identities=18% Similarity=0.200 Sum_probs=192.0
Q ss_pred CcceeEEEEecCceeEEchHHHHhhccHHHHHhhcCCCCCCCCceEEecCCCCCHHHHHHHHHHHhhcCeeeechhhHHh
Q 042020 2 EVCCDLEVDVNGEETFMVDKKILASFSGRFNKLFSGLNGSTSNLKVIFHDFPGGAEGFELIARYCYSLGKIKITASNIVL 81 (538)
Q Consensus 2 ~~~~Dv~i~V~g~~~F~lHK~vLas~S~yfr~lf~~~~~e~~~~~v~L~~~pgG~e~felv~~FcY~~~~i~it~~NV~~ 81 (538)
..+|||+|.| |+++|++||.|||++|+||++||+++++|+.+.+|+|++++ +++++++++|+|| +++.|+.+||+.
T Consensus 34 ~~lcDv~L~v-~~~~~~aHR~VLAa~S~YFraMFt~~l~e~~~~~i~l~~v~--~~~l~~ll~y~Yt-~~i~i~~~nVq~ 109 (571)
T KOG4441|consen 34 GLLCDVTLLV-GDREFPAHRVVLAACSPYFRAMFTSGLKESKQKEINLEGVD--PETLELLLDYAYT-GKLEISEDNVQE 109 (571)
T ss_pred CCCceEEEEE-CCeeechHHHHHHhccHHHHHHhcCCcccccceEEEEecCC--HHHHHHHHHHhhc-ceEEechHhHHH
Confidence 4799999999 77999999999999999999999999999999999999988 7899999999999 999999999999
Q ss_pred HHHHHhhhcccCCCCCcchHHHHHHHHHHHhhcCchhhHHHHHhcccchHhhhhhhCchhhhHHHHHHHHhhcccCCCCc
Q 042020 82 LSCAARFMEMGGDGHGNLNLIDQIEKSLEEISYWTWPELLVALKQCQVLLPTTDYLFVPEKVLSGLVERIALSFVASPYT 161 (538)
Q Consensus 82 L~cAA~~LqM~e~~~~~~NL~~~ce~FL~~~v~~sw~~~la~L~~C~~l~~~Ae~~~iv~rci~sLa~ka~~~~~~s~~~ 161 (538)
|+.||.+|||++ |++.|++||.+++.+ .||.++..+|+.+++ ..|..+|...
T Consensus 110 ll~aA~~lQi~~-------v~~~C~~fL~~~l~~---------~Nclgi~~~a~~~~~-----~~L~~~a~~~------- 161 (571)
T KOG4441|consen 110 LLEAASLLQIPE-------VVDACCEFLESQLDP---------SNCLGIRRFAELHSC-----TELLEVADEY------- 161 (571)
T ss_pred HHHHHHHhhhHH-------HHHHHHHHHHhcCCH---------HHHHHHHHHHHhcCc-----HHHHHHHHHH-------
Confidence 999999999997 999999999999965 566665566665554 3444443321
Q ss_pred cCCCCCCccccccCCCcccccccccccCCccchhhcccCChhHHHHHHHHHhhcCCChHHHHHHHHhhhhhcCCCcchHH
Q 042020 162 SFSGYFNSTFQFSGDTERCDSLMNICRQRRWWFEDLMFLNVDFVDKVSKMMITQNFEHDLICKFLLHYRKSRFCSASQVE 241 (538)
Q Consensus 162 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~WW~EDl~~L~~d~~~rvI~am~~~g~~~e~I~~aL~~Yak~~l~~~~~~~ 241 (538)
...+| ...|-.|||..||.+.+..+|+......-+|+.|+.+++.|++++.+. +...
T Consensus 162 -------i~~~F---------------~~v~~~eefl~L~~~~l~~ll~~d~l~v~~E~~vf~a~~~Wv~~d~~~-R~~~ 218 (571)
T KOG4441|consen 162 -------ILQHF---------------AEVSKTEEFLLLSLEELIGLLSSDDLNVDSEEEVFEAAMRWVKHDFEE-REEH 218 (571)
T ss_pred -------HHHHH---------------HHHhccHHhhCCCHHHHHhhccccCCCcCCHHHHHHHHHHHHhcCHhh-HHHH
Confidence 01122 123336899999999988888888888889999999999999987662 2233
Q ss_pred HhHHHHHHHHhhcccCCCCCChhhHHHHHHHhhhcccCHHHHHHHHHHHhccc
Q 042020 242 KCKMTEVVINLLSLLDRSTPSCKSLFNIFHVALSLKISRIYRKKLESLIGSQL 294 (538)
Q Consensus 242 ~r~LLE~Vv~lLp~~~~~~vs~~fL~~LLr~a~~l~as~~cr~~LE~rIg~qL 294 (538)
-..++++|. .+.+++.||.+.+....+++.++.|+..|......+|
T Consensus 219 ~~~ll~~vr-------~~ll~~~~l~~~v~~~~~~~~~~~c~~~l~ea~~~~~ 264 (571)
T KOG4441|consen 219 LPALLEAVR-------LPLLPPQFLVEIVESEPLIKRDSACRDLLDEAKKYHL 264 (571)
T ss_pred HHHHHHhcC-------ccCCCHHHHHHHHhhhhhhccCHHHHHHHHHHHHHhh
Confidence 447888774 4789999999999999999999999999999884443
No 3
>PHA02713 hypothetical protein; Provisional
Probab=99.95 E-value=1.6e-27 Score=263.99 Aligned_cols=224 Identities=13% Similarity=0.156 Sum_probs=175.7
Q ss_pred CcceeEEEEecCceeEEchHHHHhhccHHHHHhhcCCCCCCC-CceEEecCCCCCHHHHHHHHHHHhhcCeeeechhhHH
Q 042020 2 EVCCDLEVDVNGEETFMVDKKILASFSGRFNKLFSGLNGSTS-NLKVIFHDFPGGAEGFELIARYCYSLGKIKITASNIV 80 (538)
Q Consensus 2 ~~~~Dv~i~V~g~~~F~lHK~vLas~S~yfr~lf~~~~~e~~-~~~v~L~~~pgG~e~felv~~FcY~~~~i~it~~NV~ 80 (538)
+.+|||+|.|+++++|++||.|||++|+||++||+++++|+. +.+|+|++++ +++|+.+++|+|| |+ ||++||+
T Consensus 23 ~~l~DV~L~v~~~~~f~~Hr~vLaa~S~YF~amF~~~~~e~~~~~~v~l~~v~--~~~~~~ll~y~Yt-~~--i~~~nv~ 97 (557)
T PHA02713 23 DILCDVIITIGDGEEIKAHKTILAAGSKYFRTLFTTPMIIRDLVTRVNLQMFD--KDAVKNIVQYLYN-RH--ISSMNVI 97 (557)
T ss_pred CCCCCEEEEeCCCCEEeehHHHHhhcCHHHHHHhcCCchhhccCceEEeccCC--HHHHHHHHHHhcC-CC--CCHHHHH
Confidence 579999999942789999999999999999999999998764 6789999998 7899999999999 76 7999999
Q ss_pred hHHHHHhhhcccCCCCCcchHHHHHHHHHHHhhcCchhhHHHHHhcccchHhhhhhhCchhhhHHHHHHHHhhcccCCCC
Q 042020 81 LLSCAARFMEMGGDGHGNLNLIDQIEKSLEEISYWTWPELLVALKQCQVLLPTTDYLFVPEKVLSGLVERIALSFVASPY 160 (538)
Q Consensus 81 ~L~cAA~~LqM~e~~~~~~NL~~~ce~FL~~~v~~sw~~~la~L~~C~~l~~~Ae~~~iv~rci~sLa~ka~~~~~~s~~ 160 (538)
.|+.||++||++. |++.|++||.+++.+ .||.++...|+.+++ ..|..+|...
T Consensus 98 ~ll~aA~~lqi~~-------l~~~C~~~l~~~l~~---------~NCl~i~~~~~~~~~-----~~L~~~a~~~------ 150 (557)
T PHA02713 98 DVLKCADYLLIDD-------LVTDCESYIKDYTNH---------DTCIYMYHRLYEMSH-----IPIVKYIKRM------ 150 (557)
T ss_pred HHHHHHHHHCHHH-------HHHHHHHHHHhhCCc---------cchHHHHHHHHhccc-----hHHHHHHHHH------
Confidence 9999999999997 999999999999954 677777766666654 2244443332
Q ss_pred ccCCCCCCccccccCCCcccccccccccCCccchhhcccCChhHHHHHHHHHhh-cCCChHHHHHHHHhhhhhcCCCcch
Q 042020 161 TSFSGYFNSTFQFSGDTERCDSLMNICRQRRWWFEDLMFLNVDFVDKVSKMMIT-QNFEHDLICKFLLHYRKSRFCSASQ 239 (538)
Q Consensus 161 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~WW~EDl~~L~~d~~~rvI~am~~-~g~~~e~I~~aL~~Yak~~l~~~~~ 239 (538)
...+|. + +. -.|||..|+.+.+..+|+.... ...+|+.|++++++|++++....
T Consensus 151 --------i~~~f~------~-v~--------~~~ef~~L~~~~l~~lL~~d~~l~v~~Ee~v~eav~~W~~~d~~~r-- 205 (557)
T PHA02713 151 --------LMSNIP------T-LI--------TTDAFKKTVFEILFDIISTNDNVYLYREGYKVTILLKWLEYNYITE-- 205 (557)
T ss_pred --------HHHHHH------H-Hh--------CChhhhhCCHHHHHHHhccccccCCCcHHHHHHHHHHHHhcCHHHH--
Confidence 111231 0 11 1489999999998777777553 44579999999999999875421
Q ss_pred HHHhHHHHHHHHhhcccCCCCCChhhHHHHHHHhhhcccCHHHHHHHHHHH
Q 042020 240 VEKCKMTEVVINLLSLLDRSTPSCKSLFNIFHVALSLKISRIYRKKLESLI 290 (538)
Q Consensus 240 ~~~r~LLE~Vv~lLp~~~~~~vs~~fL~~LLr~a~~l~as~~cr~~LE~rI 290 (538)
.....||++|+ .+.++.++++ .+.....++.++.|+..|++..
T Consensus 206 ~~~~~ll~~VR-------~~~l~~~~~~-~~~~~~~i~~~~~c~~~l~~a~ 248 (557)
T PHA02713 206 EQLLCILSCID-------IQNLDKKSRL-LLYSNKTINMYPSCIQFLLDNK 248 (557)
T ss_pred HHHhhhHhhhh-------Hhhcchhhhh-hhcchHHHHhhHHHHHHHhhhh
Confidence 22347888885 2457788887 5666788889999999987754
No 4
>PHA02790 Kelch-like protein; Provisional
Probab=99.93 E-value=3.1e-26 Score=249.53 Aligned_cols=201 Identities=15% Similarity=0.137 Sum_probs=156.9
Q ss_pred CcceeEEEEecCceeEEchHHHHhhccHHHHHhhcCCCCCCCCceEEec--CCCCCHHHHHHHHHHHhhcCeeeechhhH
Q 042020 2 EVCCDLEVDVNGEETFMVDKKILASFSGRFNKLFSGLNGSTSNLKVIFH--DFPGGAEGFELIARYCYSLGKIKITASNI 79 (538)
Q Consensus 2 ~~~~Dv~i~V~g~~~F~lHK~vLas~S~yfr~lf~~~~~e~~~~~v~L~--~~pgG~e~felv~~FcY~~~~i~it~~NV 79 (538)
.++|||+..+ | .+|++||.|||++|+|||+||+++++|+.. +|.+. |++ +++|+.+++|+|| |+|.||.+||
T Consensus 20 ~~~~~~~~~~-~-~~~~~HR~VLAa~S~YFraMF~~~~~Es~~-~v~~~~~~v~--~~~l~~lldy~YT-g~l~it~~nV 93 (480)
T PHA02790 20 KKFKTIIEAI-G-GNIIVNSTILKKLSPYFRTHLRQKYTKNKD-PVTRVCLDLD--IHSLTSIVIYSYT-GKVYIDSHNV 93 (480)
T ss_pred hhhceEEEEc-C-cEEeeehhhhhhcCHHHHHHhcCCcccccc-ceEEEecCcC--HHHHHHHHHhhee-eeEEEecccH
Confidence 4789999988 5 479999999999999999999999998854 56653 787 7899999999999 9999999999
Q ss_pred HhHHHHHhhhcccCCCCCcchHHHHHHHHHHHhhcCchhhHHHHHhcccchHhhhhhhCchhhhHHHHHHHHhhcccCCC
Q 042020 80 VLLSCAARFMEMGGDGHGNLNLIDQIEKSLEEISYWTWPELLVALKQCQVLLPTTDYLFVPEKVLSGLVERIALSFVASP 159 (538)
Q Consensus 80 ~~L~cAA~~LqM~e~~~~~~NL~~~ce~FL~~~v~~sw~~~la~L~~C~~l~~~Ae~~~iv~rci~sLa~ka~~~~~~s~ 159 (538)
+.|+.||.+|||++ |++.|++||.+++.+ .||.++..+|+.|++ +.|..+|...
T Consensus 94 ~~ll~aA~~Lqi~~-------v~~~C~~fL~~~l~~---------~NCl~i~~~A~~y~~-----~~L~~~a~~f----- 147 (480)
T PHA02790 94 VNLLRASILTSVEF-------IIYTCINFILRDFRK---------EYCVECYMMGIEYGL-----SNLLCHTKDF----- 147 (480)
T ss_pred HHHHHHHHHhChHH-------HHHHHHHHHHhhCCc---------chHHHHHHHHHHhCH-----HHHHHHHHHH-----
Confidence 99999999999997 999999999999954 688888888888877 7777776553
Q ss_pred CccCCCCCCccccccCCCcccccccccccCCccchhhcccCChhHHHHHHHHHhhcCCChHHHHHHHHhhhhhcCCCcch
Q 042020 160 YTSFSGYFNSTFQFSGDTERCDSLMNICRQRRWWFEDLMFLNVDFVDKVSKMMITQNFEHDLICKFLLHYRKSRFCSASQ 239 (538)
Q Consensus 160 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~WW~EDl~~L~~d~~~rvI~am~~~g~~~e~I~~aL~~Yak~~l~~~~~ 239 (538)
...+|. + +. . .-+|||..|++ ..+|+......-+|+.|++++++|+++. .
T Consensus 148 ---------i~~nF~------~-v~-----~-~~~~ef~~L~~---~~lLssd~L~v~~Ee~V~eav~~Wl~~~-----~ 197 (480)
T PHA02790 148 ---------IAKHFL------E-LE-----D-DIIDNFDYLSM---KLILESDELNVPDEDYVVDFVIKWYMKR-----R 197 (480)
T ss_pred ---------HHHhHH------H-Hh-----c-ccchhhhhCCH---HHhcccccCCCccHHHHHHHHHHHHHhh-----H
Confidence 112331 0 11 0 00378988986 4566666666668999999999999963 2
Q ss_pred HHHhHHHHHHHHhhcccCCCCCChhhHH
Q 042020 240 VEKCKMTEVVINLLSLLDRSTPSCKSLF 267 (538)
Q Consensus 240 ~~~r~LLE~Vv~lLp~~~~~~vs~~fL~ 267 (538)
.+...+++.|...+ ..+.++..++-
T Consensus 198 ~~~~~l~~~vr~~i---r~~~l~~~~l~ 222 (480)
T PHA02790 198 NRLGNLLLLIKNVI---RSNYLSPRGIN 222 (480)
T ss_pred HHHHHHHHHHHhcC---ChhhCCHHHHH
Confidence 44557788774312 24666766663
No 5
>PHA03098 kelch-like protein; Provisional
Probab=99.91 E-value=3.3e-24 Score=235.34 Aligned_cols=224 Identities=17% Similarity=0.188 Sum_probs=176.2
Q ss_pred CcceeEEEEe-cCceeEEchHHHHhhccHHHHHhhcCCCCCCCCceEEecCCCCCHHHHHHHHHHHhhcCeeeechhhHH
Q 042020 2 EVCCDLEVDV-NGEETFMVDKKILASFSGRFNKLFSGLNGSTSNLKVIFHDFPGGAEGFELIARYCYSLGKIKITASNIV 80 (538)
Q Consensus 2 ~~~~Dv~i~V-~g~~~F~lHK~vLas~S~yfr~lf~~~~~e~~~~~v~L~~~pgG~e~felv~~FcY~~~~i~it~~NV~ 80 (538)
+.+|||+|.| .||++|++||.+|+++|+||++||+++++ +.+|+|++ + +++|+.+++|+|| |++.|+.+||.
T Consensus 7 ~~~~Dv~l~~~~~~~~~~~Hk~vLaa~S~yF~~mf~~~~~---~~~i~l~~-~--~~~~~~~l~y~Yt-g~~~i~~~~~~ 79 (534)
T PHA03098 7 QKFCDESIIIVNGGGIIKVHKIILSSSSEYFKKMFKNNFK---ENEINLNI-D--YDSFNEVIKYIYT-GKINITSNNVK 79 (534)
T ss_pred CCCCCEEEEEEcCCEEEEeHHHHHHhhhHHHHHHHhCCCC---CceEEecC-C--HHHHHHHHHHhcC-CceEEcHHHHH
Confidence 4799999997 25689999999999999999999998876 56799988 6 7899999999999 99999999999
Q ss_pred hHHHHHhhhcccCCCCCcchHHHHHHHHHHHhhcCchhhHHHHHhcccchHhhhhhhCchhhhHHHHHHHHhhcccCCCC
Q 042020 81 LLSCAARFMEMGGDGHGNLNLIDQIEKSLEEISYWTWPELLVALKQCQVLLPTTDYLFVPEKVLSGLVERIALSFVASPY 160 (538)
Q Consensus 81 ~L~cAA~~LqM~e~~~~~~NL~~~ce~FL~~~v~~sw~~~la~L~~C~~l~~~Ae~~~iv~rci~sLa~ka~~~~~~s~~ 160 (538)
.|+.||++||+++ |++.|++||.+.+ ...||..++.+|+.|++ +.|...+-...
T Consensus 80 ~ll~~A~~l~~~~-------l~~~C~~~l~~~l---------~~~nc~~~~~~a~~~~~-----~~L~~~~~~~i----- 133 (534)
T PHA03098 80 DILSIANYLIIDF-------LINLCINYIIKII---------DDNNCIDIYRFSFFYGC-----KKLYSAAYNYI----- 133 (534)
T ss_pred HHHHHHHHhCcHH-------HHHHHHHHHHHhC---------CHhHHHHHHHHHHHcCc-----HHHHHHHHHHH-----
Confidence 9999999999997 9999999999988 45788888888888876 44444433210
Q ss_pred ccCCCCCCccccccCCCcccccccccccCCccchhhcccCChhHHHHHHHHHhhcCCChHHHHHHHHhhhhhcCCCcchH
Q 042020 161 TSFSGYFNSTFQFSGDTERCDSLMNICRQRRWWFEDLMFLNVDFVDKVSKMMITQNFEHDLICKFLLHYRKSRFCSASQV 240 (538)
Q Consensus 161 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~WW~EDl~~L~~d~~~rvI~am~~~g~~~e~I~~aL~~Yak~~l~~~~~~ 240 (538)
..+|. + +.+ .+||..|+.+.+..+|+.....-.+|+.|+++++.|+++..... ..
T Consensus 134 ---------~~nf~------~-v~~--------~~~f~~l~~~~l~~ll~~~~L~v~~E~~v~~av~~W~~~~~~~r-~~ 188 (534)
T PHA03098 134 ---------RNNIE------L-IYN--------DPDFIYLSKNELIKILSDDKLNVSSEDVVLEIIIKWLTSKKNNK-YK 188 (534)
T ss_pred ---------HHHHH------H-Hhc--------CchhhcCCHHHHHHHhcCCCcCcCCHHHHHHHHHHHHhcChhhh-Hh
Confidence 01221 0 111 47899999999888877766666689999999999999765411 22
Q ss_pred HHhHHHHHHHHhhcccCCCCCChhhHHHHHH------HhhhcccCHHHHHHHHHHHh
Q 042020 241 EKCKMTEVVINLLSLLDRSTPSCKSLFNIFH------VALSLKISRIYRKKLESLIG 291 (538)
Q Consensus 241 ~~r~LLE~Vv~lLp~~~~~~vs~~fL~~LLr------~a~~l~as~~cr~~LE~rIg 291 (538)
....|+++|+ .+.++..+|..+.+ ...++ .+..|+..+.....
T Consensus 189 ~~~~ll~~vR-------~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 237 (534)
T PHA03098 189 DICLILKVLR-------ITFLSEEGIKKLKRWKLRIKKKKIV-FNKRCIKIIYSKKY 237 (534)
T ss_pred HHHHHHhhcc-------ccccCHHHHHHHHHHHhhcCCccee-ccccchHHHHHHHh
Confidence 3347888885 57899999998876 33445 77889888766553
No 6
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=99.70 E-value=1.1e-16 Score=138.99 Aligned_cols=100 Identities=32% Similarity=0.443 Sum_probs=88.0
Q ss_pred CcceeEEEEecC-ceeEEchHHHHhhccHHHHHhhcCC-CCCCCCceEEecCCCCCHHHHHHHHHHHhhcCeeeec-hhh
Q 042020 2 EVCCDLEVDVNG-EETFMVDKKILASFSGRFNKLFSGL-NGSTSNLKVIFHDFPGGAEGFELIARYCYSLGKIKIT-ASN 78 (538)
Q Consensus 2 ~~~~Dv~i~V~g-~~~F~lHK~vLas~S~yfr~lf~~~-~~e~~~~~v~L~~~pgG~e~felv~~FcY~~~~i~it-~~N 78 (538)
+.+||++|.| | +.+|++||.+|+++|+||++||.+. ..+....+|.+++++ +++|+.+++|+|+ +++.++ .+|
T Consensus 8 ~~~~D~~i~v-~d~~~~~vhk~iL~~~S~~F~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~l~~~Y~-~~~~~~~~~~ 83 (111)
T PF00651_consen 8 NEFSDVTIRV-GDGKTFYVHKNILAARSPYFRNLFEGSKFKESTVPEISLPDVS--PEAFEAFLEYMYT-GEIEINSDEN 83 (111)
T ss_dssp TTS--EEEEE-TTTEEEEE-HHHHHHHBHHHHHHHTTTTSTTSSEEEEEETTSC--HHHHHHHHHHHHH-SEEEEE-TTT
T ss_pred CCCCCEEEEE-CCCEEEeechhhhhccchhhhhccccccccccccccccccccc--ccccccccccccC-CcccCCHHHH
Confidence 4689999999 6 7899999999999999999999987 344444578999999 7899999999999 899999 999
Q ss_pred HHhHHHHHhhhcccCCCCCcchHHHHHHHHHHHh
Q 042020 79 IVLLSCAARFMEMGGDGHGNLNLIDQIEKSLEEI 112 (538)
Q Consensus 79 V~~L~cAA~~LqM~e~~~~~~NL~~~ce~FL~~~ 112 (538)
+..++.+|++|+|++ |.+.|++||.+.
T Consensus 84 ~~~ll~lA~~~~~~~-------L~~~~~~~l~~~ 110 (111)
T PF00651_consen 84 VEELLELADKLQIPE-------LKKACEKFLQES 110 (111)
T ss_dssp HHHHHHHHHHTTBHH-------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcHH-------HHHHHHHHHHhC
Confidence 999999999999996 999999999874
No 7
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=99.62 E-value=1.3e-15 Score=124.72 Aligned_cols=90 Identities=28% Similarity=0.501 Sum_probs=82.0
Q ss_pred eEEEEecCceeEEchHHHHhhccHHHHHhhcCCCCCCCCceEEecCCCCCHHHHHHHHHHHhhcCeeeechhhHHhHHHH
Q 042020 6 DLEVDVNGEETFMVDKKILASFSGRFNKLFSGLNGSTSNLKVIFHDFPGGAEGFELIARYCYSLGKIKITASNIVLLSCA 85 (538)
Q Consensus 6 Dv~i~V~g~~~F~lHK~vLas~S~yfr~lf~~~~~e~~~~~v~L~~~pgG~e~felv~~FcY~~~~i~it~~NV~~L~cA 85 (538)
||+|.| |+.+|++||.+|+++|+||++||.+...+.....+.+++++ +++|+.+++|+|+ +++.+++.|+..++.+
T Consensus 1 dv~i~v-~~~~~~~h~~iL~~~s~~f~~~~~~~~~~~~~~~i~l~~~~--~~~f~~~l~~ly~-~~~~~~~~~~~~l~~~ 76 (90)
T smart00225 1 DVTLVV-GGKKFKAHKAVLAACSPYFKALFSGDFKESKKSEIYLDDVS--PEDFRALLEFLYT-GKLDLPEENVEELLEL 76 (90)
T ss_pred CeEEEE-CCEEEehHHHHHhhcCHHHHHHHcCCCccCCCCEEEecCCC--HHHHHHHHHeecC-ceeecCHHHHHHHHHH
Confidence 789999 78999999999999999999999987665566789999987 7899999999999 8999999999999999
Q ss_pred HhhhcccCCCCCcchHHHHHH
Q 042020 86 ARFMEMGGDGHGNLNLIDQIE 106 (538)
Q Consensus 86 A~~LqM~e~~~~~~NL~~~ce 106 (538)
|++++|++ |+..|+
T Consensus 77 a~~~~~~~-------l~~~c~ 90 (90)
T smart00225 77 ADYLQIPG-------LVELCE 90 (90)
T ss_pred HHHHCcHH-------HHhhhC
Confidence 99999996 888774
No 8
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.41 E-value=1.5e-12 Score=135.57 Aligned_cols=209 Identities=17% Similarity=0.134 Sum_probs=142.1
Q ss_pred CcceeEEEEecCceeEEchHHHHhhccHHHHHhhcCCCCCCCCceEEecCCCCCHHHHHHHHHHHhhcCeeeechh---h
Q 042020 2 EVCCDLEVDVNGEETFMVDKKILASFSGRFNKLFSGLNGSTSNLKVIFHDFPGGAEGFELIARYCYSLGKIKITAS---N 78 (538)
Q Consensus 2 ~~~~Dv~i~V~g~~~F~lHK~vLas~S~yfr~lf~~~~~e~~~~~v~L~~~pgG~e~felv~~FcY~~~~i~it~~---N 78 (538)
+..+||++.| ++..|++||.+||++|.|||+|+-++|.|+.+..|.|++-. +++|..+++|+|| |++.++.. -
T Consensus 42 e~y~DVtfvv-e~~rfpAHRvILAaRs~yFRAlLYgGm~Es~q~~ipLq~t~--~eAF~~lLrYiYt-g~~~l~~~~ed~ 117 (620)
T KOG4350|consen 42 EDYSDVTFVV-EDTRFPAHRVILAARSSYFRALLYGGMQESHQQLIPLQETN--SEAFRALLRYIYT-GKIDLAGVEEDI 117 (620)
T ss_pred CcccceEEEE-eccccchhhhhHHHHHHHHHHHHhhhhhhhhhccccccccc--HHHHHHHHHHHhh-cceecccchHHH
Confidence 4678999999 67899999999999999999999999999988889888765 8999999999999 99998753 3
Q ss_pred HHhHHHHHhhhcccCCCCCcchHHHHHHHHHHHhhcCchhhHHHHHhcccchHhhhhhhCchhhhHHHHHHHHhhcccCC
Q 042020 79 IVLLSCAARFMEMGGDGHGNLNLIDQIEKSLEEISYWTWPELLVALKQCQVLLPTTDYLFVPEKVLSGLVERIALSFVAS 158 (538)
Q Consensus 79 V~~L~cAA~~LqM~e~~~~~~NL~~~ce~FL~~~v~~sw~~~la~L~~C~~l~~~Ae~~~iv~rci~sLa~ka~~~~~~s 158 (538)
....+.-|...++.+ |-..+.+||.+.+ .+.|--.++..|.-|++ ..|....+...+-
T Consensus 118 lld~LslAh~Ygf~~-------Le~aiSeYl~~iL---------~~~NvCmifdaA~ly~l-----~~Lt~~C~mfmDr- 175 (620)
T KOG4350|consen 118 LLDYLSLAHRYGFIQ-------LETAISEYLKEIL---------KNENVCMIFDAAYLYQL-----TDLTDYCMMFMDR- 175 (620)
T ss_pred HHHHHHHHHhcCcHH-------HHHHHHHHHHHHH---------cccceeeeeeHHHHhcc-----hHHHHHHHHHHhc-
Confidence 344455555556654 9999999999987 34554455666666655 4444444442100
Q ss_pred CCccCCCCCCccccccCCCcccccccccccCCccchhhcccCChhHHHHHHHHHhhcCCChHHHHHHHHhhhhhcCCCcc
Q 042020 159 PYTSFSGYFNSTFQFSGDTERCDSLMNICRQRRWWFEDLMFLNVDFVDKVSKMMITQNFEHDLICKFLLHYRKSRFCSAS 238 (538)
Q Consensus 159 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~WW~EDl~~L~~d~~~rvI~am~~~g~~~e~I~~aL~~Yak~~l~~~~ 238 (538)
+ . .+.--.+-|..|+-+-.+.++.... --..|..|+-++..|-++...
T Consensus 176 -------------n-------A--------~~lL~~~sFn~LSk~sL~e~l~RDs-FfApE~~IFlAv~~W~~~Nsk--- 223 (620)
T KOG4350|consen 176 -------------N-------A--------DQLLEDPSFNRLSKDSLKELLARDS-FFAPELKIFLAVRSWHQNNSK--- 223 (620)
T ss_pred -------------C-------H--------HhhhcCcchhhhhHHHHHHHHhhhc-ccchHHHHHHHHHHHHhcCch---
Confidence 0 0 0000023345566666555543221 112556899999999885432
Q ss_pred hHHHhHHHHHHHHhhcccCCCCCChhhHHHHHHHhhhc
Q 042020 239 QVEKCKMTEVVINLLSLLDRSTPSCKSLFNIFHVALSL 276 (538)
Q Consensus 239 ~~~~r~LLE~Vv~lLp~~~~~~vs~~fL~~LLr~a~~l 276 (538)
...+.++|.|+ | |.++-.-|+..+|-.-++
T Consensus 224 -e~~k~~~~~VR--L-----PLm~lteLLnvVRPsGll 253 (620)
T KOG4350|consen 224 -EASKVLLELVR--L-----PLMTLTELLNVVRPSGLL 253 (620)
T ss_pred -hhHHHHHHHHh--h-----hhccHHHHHhccCcccCc
Confidence 44567888874 3 456666666666655444
No 9
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=99.25 E-value=5e-11 Score=126.78 Aligned_cols=179 Identities=19% Similarity=0.147 Sum_probs=138.2
Q ss_pred CcceeEEEEecC----ceeEEchHHHHhhccHHHHHhhcCCCCCCCCceEEecCCCCCHHHHHHHHHHHhhcCeeeechh
Q 042020 2 EVCCDLEVDVNG----EETFMVDKKILASFSGRFNKLFSGLNGSTSNLKVIFHDFPGGAEGFELIARYCYSLGKIKITAS 77 (538)
Q Consensus 2 ~~~~Dv~i~V~g----~~~F~lHK~vLas~S~yfr~lf~~~~~e~~~~~v~L~~~pgG~e~felv~~FcY~~~~i~it~~ 77 (538)
+..+|+.+.|.+ -+.||+||++|+..|.-|.+||.++..+....+|+++|+. |.+|...++|.|+ ..+.+.++
T Consensus 112 ~~~adv~fivg~~~~~~q~~paHk~vla~gS~VFdaMf~g~~a~~~s~ei~lpdve--paaFl~~L~flYs-dev~~~~d 188 (521)
T KOG2075|consen 112 ELLADVHFIVGEEDGGSQRIPAHKLVLADGSDVFDAMFYGGLAEDASLEIRLPDVE--PAAFLAFLRFLYS-DEVKLAAD 188 (521)
T ss_pred cccceeEEEeccCCCcccccchhhhhhhcchHHHHHHhccCcccccCceeecCCcC--hhHhHHHHHHHhc-chhhhhHH
Confidence 357899999931 3689999999999999999999998888767899999998 7899999999999 79999999
Q ss_pred hHHhHHHHHhhhcccCCCCCcchHHHHHHHHHHHhhcCchhhHHHHHhcccchHhhhhhhCchhhhHHHHHHHHhhcccC
Q 042020 78 NIVLLSCAARFMEMGGDGHGNLNLIDQIEKSLEEISYWTWPELLVALKQCQVLLPTTDYLFVPEKVLSGLVERIALSFVA 157 (538)
Q Consensus 78 NV~~L~cAA~~LqM~e~~~~~~NL~~~ce~FL~~~v~~sw~~~la~L~~C~~l~~~Ae~~~iv~rci~sLa~ka~~~~~~ 157 (538)
||..++.||.-.-.+. |...|.+||+..+.. .+.+..|-+|..+ .++-.++++|++.|......-
T Consensus 189 tvi~tl~~AkKY~Vpa-------Ler~CVkflr~~l~~--~naf~~L~q~A~l---f~ep~Li~~c~e~id~~~~~a--- 253 (521)
T KOG2075|consen 189 TVITTLYAAKKYLVPA-------LERQCVKFLRKNLMA--DNAFLELFQRAKL---FDEPSLISICLEVIDKSFEDA--- 253 (521)
T ss_pred HHHHHHHHHHHhhhHH-------HHHHHHHHHHHhcCC--hHHHHHHHHHHHh---hcCHHHHHHHHHHhhhHHHhh---
Confidence 9999999998756664 999999999998865 5666777777444 345568888988876544220
Q ss_pred CCCccCCCCCCccccccCCCcccccccccccCCccchhhcccCChhHHHHHHHHHhhcCCChHHHHHHHHhhhh
Q 042020 158 SPYTSFSGYFNSTFQFSGDTERCDSLMNICRQRRWWFEDLMFLNVDFVDKVSKMMITQNFEHDLICKFLLHYRK 231 (538)
Q Consensus 158 s~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~WW~EDl~~L~~d~~~rvI~am~~~g~~~e~I~~aL~~Yak 231 (538)
-..-||-|+-.+ .+.|..|++.-. .++++-.+++++++|+.
T Consensus 254 -------------------------------l~~EGf~did~~-~dt~~evl~r~~-l~~~e~~lfeA~lkw~~ 294 (521)
T KOG2075|consen 254 -------------------------------LTPEGFCDIDST-RDTYEEVLRRDT-LEAREFRLFEAALKWAE 294 (521)
T ss_pred -------------------------------hCccceeehhhH-HHHHHHHHhhcc-cchhHHHHHHHHHhhcc
Confidence 011234555444 777655554332 23467799999999986
No 10
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=98.78 E-value=1.7e-08 Score=97.37 Aligned_cols=115 Identities=19% Similarity=0.254 Sum_probs=94.1
Q ss_pred CcceeEEEEecC---ceeEEchHHHHhhccHHHHHhhcCCCCCCCCceEEecCCCCCHHHHHHHHHHHhhcCeeeechhh
Q 042020 2 EVCCDLEVDVNG---EETFMVDKKILASFSGRFNKLFSGLNGSTSNLKVIFHDFPGGAEGFELIARYCYSLGKIKITASN 78 (538)
Q Consensus 2 ~~~~Dv~i~V~g---~~~F~lHK~vLas~S~yfr~lf~~~~~e~~~~~v~L~~~pgG~e~felv~~FcY~~~~i~it~~N 78 (538)
+.++||++.+ | ++.+++||+||+++|++.+ |.++..| ......+.|.. +++|-.+++++|| .+|++..+.
T Consensus 64 ~qfSDlk~K~-~gns~k~i~AHKfVLAARsD~Wk--faN~~de-kse~~~~dDad--~Ea~~t~iRWIYT-DEidfk~dD 136 (280)
T KOG4591|consen 64 EQFSDLKFKF-AGNSDKHIPAHKFVLAARSDFWK--FANGGDE-KSEELDLDDAD--FEAFHTAIRWIYT-DEIDFKEDD 136 (280)
T ss_pred ccccceeEEe-cCCccccCchhhhhhhhhcchhh--hccCCCc-chhhhcccccC--HHHHHHhheeeec-cccccccch
Confidence 4789999999 5 5779999999999999764 4443322 23456677877 8999999999999 799998776
Q ss_pred HH--hHHHHHhhhcccCCCCCcchHHHHHHHHHHHhhcCchhhHHHHHhcccchHhhhhhhCc
Q 042020 79 IV--LLSCAARFMEMGGDGHGNLNLIDQIEKSLEEISYWTWPELLVALKQCQVLLPTTDYLFV 139 (538)
Q Consensus 79 V~--~L~cAA~~LqM~e~~~~~~NL~~~ce~FL~~~v~~sw~~~la~L~~C~~l~~~Ae~~~i 139 (538)
+. .|...|.-+|..- |.++|+.=+...+ ...||..++.+||+...
T Consensus 137 ~~L~el~e~An~FqLe~-------Lke~C~k~l~a~l---------~V~NCIk~Ye~AEe~n~ 183 (280)
T KOG4591|consen 137 EFLLELCELANRFQLEL-------LKERCEKGLGALL---------HVDNCIKFYEFAEELNA 183 (280)
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHhhHh---------hHhhHHHHHHHHHHhhH
Confidence 65 4778899999986 9999999988877 56899999999999854
No 11
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=98.45 E-value=4.5e-07 Score=95.29 Aligned_cols=125 Identities=17% Similarity=0.125 Sum_probs=104.9
Q ss_pred cceeEEEEecCceeEEchHHHHhhccHHHHHhhcCCCCCCCCce--EEecCCCCCHHHHHHHHHHHhhcCeeeechhhHH
Q 042020 3 VCCDLEVDVNGEETFMVDKKILASFSGRFNKLFSGLNGSTSNLK--VIFHDFPGGAEGFELIARYCYSLGKIKITASNIV 80 (538)
Q Consensus 3 ~~~Dv~i~V~g~~~F~lHK~vLas~S~yfr~lf~~~~~e~~~~~--v~L~~~pgG~e~felv~~FcY~~~~i~it~~NV~ 80 (538)
.-+||+|.+ -|.+.++||.-| ..|+||..||.+..+|+.... ++|+|=.-..++|..++.=.|. .+|+|.++-|.
T Consensus 68 enSDv~l~a-lg~eWrlHk~yL-~QS~yf~smf~Gtw~es~~~iIqleI~Dp~Id~~al~~a~gsLY~-dEveI~l~dv~ 144 (488)
T KOG4682|consen 68 ENSDVILEA-LGFEWRLHKPYL-FQSEYFKSMFSGTWKESSMNIIQLEIPDPNIDVVALQVAFGSLYR-DEVEIKLSDVV 144 (488)
T ss_pred CCcceehhh-ccceeeeeeeee-eccHHHHHHhccccChhhCceEEEEcCCCcccHHHHHHHHhhhhh-hheeccHHHHH
Confidence 458999998 567899999877 789999999998887776654 4555533348899999999998 89999999999
Q ss_pred hHHHHHhhhcccCCCCCcchHHHHHHHHHHHhhcCchhhHHHHHhcccchHhhhhhhCchhhhHHHHHHHH
Q 042020 81 LLSCAARFMEMGGDGHGNLNLIDQIEKSLEEISYWTWPELLVALKQCQVLLPTTDYLFVPEKVLSGLVERI 151 (538)
Q Consensus 81 ~L~cAA~~LqM~e~~~~~~NL~~~ce~FL~~~v~~sw~~~la~L~~C~~l~~~Ae~~~iv~rci~sLa~ka 151 (538)
.+++||.+||.+. |+++|.+-+.+.+.+ ++..+....+..||+ +++-.+.
T Consensus 145 gvlAaA~~lqldg-------l~qrC~evMie~lsp---------kta~~yYea~ckYgl-----e~vk~kc 194 (488)
T KOG4682|consen 145 GVLAAACLLQLDG-------LIQRCGEVMIETLSP---------KTACGYYEAACKYGL-----ESVKKKC 194 (488)
T ss_pred HHHHHHHHHHHhh-------HHHHHHHHHHHhcCh---------hhhhHhhhhhhhhhh-----HHHHHHH
Confidence 9999999999996 999999999999955 566778888889987 6665553
No 12
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=98.28 E-value=7.6e-07 Score=100.00 Aligned_cols=65 Identities=28% Similarity=0.383 Sum_probs=54.4
Q ss_pred CCcceeEEEEecCceeEEchHHHHhhccHHHHHhhcCCCCCC------------CCceEEecCCCCCHHHHHHHHHHHhh
Q 042020 1 MEVCCDLEVDVNGEETFMVDKKILASFSGRFNKLFSGLNGST------------SNLKVIFHDFPGGAEGFELIARYCYS 68 (538)
Q Consensus 1 m~~~~Dv~i~V~g~~~F~lHK~vLas~S~yfr~lf~~~~~e~------------~~~~v~L~~~pgG~e~felv~~FcY~ 68 (538)
|+-+.|||+.| |+..||+||++|+++|++||+||-...+.+ ..++|.+.++| |.+||+++.|+||
T Consensus 555 ~ds~hDVtf~v-g~~~F~aHKfIl~~rs~flrkL~l~~~~~s~~~dIY~~~~~~~~~~~~ve~i~--p~mfe~lL~~iYt 631 (1267)
T KOG0783|consen 555 KDSFHDVTFYV-GTSMFHAHKFILCARSSFLRKLLLQKKKSSVSNDIYIEEITQSHSTIRVEDIP--PLMFEILLHYIYT 631 (1267)
T ss_pred ccccceEEEEe-cCeecccceEEEEeccHHHHHHHHhhccccccceeeeecccccCceeeeccCC--HHHHHHHHHHHhc
Confidence 45678999999 889999999999999999999997543221 23456688999 6799999999999
No 13
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=98.19 E-value=1.6e-06 Score=97.45 Aligned_cols=131 Identities=17% Similarity=0.173 Sum_probs=99.4
Q ss_pred eeEEEEecCceeEEchHHHHhhccHHHHHhhcCCCCCCCCceEEecCCCCCHHHHHHHHHHHhhcCeeeec-----hhhH
Q 042020 5 CDLEVDVNGEETFMVDKKILASFSGRFNKLFSGLNGSTSNLKVIFHDFPGGAEGFELIARYCYSLGKIKIT-----ASNI 79 (538)
Q Consensus 5 ~Dv~i~V~g~~~F~lHK~vLas~S~yfr~lf~~~~~e~~~~~v~L~~~pgG~e~felv~~FcY~~~~i~it-----~~NV 79 (538)
-|+.|...+|+.|++||.+|++++.||..||.....|+.. |...+.|-.+|.++.|++|.|+..+..+- .+=+
T Consensus 711 ~d~~i~~KDGkvl~aHkc~L~aRlEYF~smf~~~w~E~sS--~t~~~~p~~~e~m~ivLdylYs~d~~~~~k~~~~~dF~ 788 (1267)
T KOG0783|consen 711 MDTVIKLKDGKVLKAHKCFLSARLEYFSSMFQFVWMESSS--ITVNLSPLTVEHMSIVLDYLYSDDKVELFKDLKESDFM 788 (1267)
T ss_pred eeEEEEecCCcCcccceeEeeeHHHHHHHHHHHHHhhhcc--ceeecCcchHHHHHHHHHHHHccchHHHHhccchhhhh
Confidence 3556655567789999999999999999999876656554 44555565589999999999953444331 2335
Q ss_pred HhHHHHHhhhcccCCCCCcchHHHHHHHHHHHhhcCchhhHHHHHhcccchHhhhhhhC---chhhhHHHHHHHHhh
Q 042020 80 VLLSCAARFMEMGGDGHGNLNLIDQIEKSLEEISYWTWPELLVALKQCQVLLPTTDYLF---VPEKVLSGLVERIAL 153 (538)
Q Consensus 80 ~~L~cAA~~LqM~e~~~~~~NL~~~ce~FL~~~v~~sw~~~la~L~~C~~l~~~Ae~~~---iv~rci~sLa~ka~~ 153 (538)
..++..|+.|=+++ |.+.||.-|.+.+ .|++|..|+.+|..|+ +-.+|++-|......
T Consensus 789 ~~il~iaDqlli~~-------Lk~Ice~~ll~kl---------~lk~~~~llefaamY~ak~L~~~C~dfic~N~~~ 849 (1267)
T KOG0783|consen 789 FEILSIADQLLILE-------LKSICEQSLLRKL---------NLKTLPTLLEFAAMYHAKELYSRCIDFICHNIEF 849 (1267)
T ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHhHh---------cccchHHHHHHHHHhhHHHHHHHHHHHHHHhHHH
Confidence 56788898888887 9999999999988 7899999999998884 456777766554433
No 14
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=97.94 E-value=1.1e-05 Score=83.51 Aligned_cols=87 Identities=21% Similarity=0.317 Sum_probs=73.6
Q ss_pred eeEEchHHHHhhccHHHHHhhcC---CCCCCCCceEEec-CCCCCHHHHHHHHHHHhhcCeeeechhhHHhHHHHHhhhc
Q 042020 15 ETFMVDKKILASFSGRFNKLFSG---LNGSTSNLKVIFH-DFPGGAEGFELIARYCYSLGKIKITASNIVLLSCAARFME 90 (538)
Q Consensus 15 ~~F~lHK~vLas~S~yfr~lf~~---~~~e~~~~~v~L~-~~pgG~e~felv~~FcY~~~~i~it~~NV~~L~cAA~~Lq 90 (538)
+.|.|.+.+|.+.=+||+..+.. +..+.....|..+ |+. +|+-+.+|+++ ....||++||++++--++|||
T Consensus 14 rdF~C~~~lL~~~M~YF~~~l~~~~~~~~~~~~idisVhCDv~----iF~WLm~yv~~-~~p~l~~~NvvsIliSS~FL~ 88 (317)
T PF11822_consen 14 RDFTCPRDLLVSEMRYFAEYLSRYINDSQRWEEIDISVHCDVH----IFEWLMRYVKG-EPPSLTPSNVVSILISSEFLQ 88 (317)
T ss_pred eeeeccHHHHHHhhHHHHHHHhhcccccCcCCCcceEEecChh----HHHHHHHHhhc-CCCcCCcCcEEEeEehhhhhc
Confidence 57999999999999999999954 3333333344444 664 99999999998 899999999999999999999
Q ss_pred ccCCCCCcchHHHHHHHHHHHhh
Q 042020 91 MGGDGHGNLNLIDQIEKSLEEIS 113 (538)
Q Consensus 91 M~e~~~~~~NL~~~ce~FL~~~v 113 (538)
|++ |++.|-.|+..++
T Consensus 89 M~~-------Lve~cl~y~~~~~ 104 (317)
T PF11822_consen 89 MES-------LVEECLQYCHDHM 104 (317)
T ss_pred cHH-------HHHHHHHHHHHhH
Confidence 997 9999999997765
No 15
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=97.23 E-value=0.0012 Score=57.71 Aligned_cols=83 Identities=16% Similarity=0.286 Sum_probs=63.7
Q ss_pred eEEEEecCceeEEchHHHHhhccHHHHHhhcCCCCCC-CCceEEecCCCCCHHHHHHHHHHHhhcCe-------------
Q 042020 6 DLEVDVNGEETFMVDKKILASFSGRFNKLFSGLNGST-SNLKVIFHDFPGGAEGFELIARYCYSLGK------------- 71 (538)
Q Consensus 6 Dv~i~V~g~~~F~lHK~vLas~S~yfr~lf~~~~~e~-~~~~v~L~~~pgG~e~felv~~FcY~~~~------------- 71 (538)
-|++.-.+|..|.+.+.+. ..|+-++.|+.+...+. ....|.|++++ +.+++.|++||+-...
T Consensus 3 ~v~L~S~Dg~~f~v~~~~a-~~S~~i~~~l~~~~~~~~~~~~Ipl~~v~--~~~L~~Vi~yc~~h~~~~~~~~~~~~~~~ 79 (104)
T smart00512 3 YIKLISSDGEVFEVEREVA-RQSKTIKAMIEDLGVDDENNNPIPLPNVT--SKILSKVIEYCEHHVDDPPSVADKDDIPT 79 (104)
T ss_pred eEEEEeCCCCEEEecHHHH-HHHHHHHHHHHccCcccCCCCCccCCCcC--HHHHHHHHHHHHHcccCCCCccccccccH
Confidence 3677776788999999966 79999999998643222 22478999999 5799999999984210
Q ss_pred -----eeechhhHHhHHHHHhhhcc
Q 042020 72 -----IKITASNIVLLSCAARFMEM 91 (538)
Q Consensus 72 -----i~it~~NV~~L~cAA~~LqM 91 (538)
+.+..+++..|+.||.||++
T Consensus 80 wD~~F~~~d~~~l~dLl~AAnyL~I 104 (104)
T smart00512 80 WDAEFLKIDQETLFELILAANYLDI 104 (104)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 11666789999999999985
No 16
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism]
Probab=96.57 E-value=0.013 Score=58.72 Aligned_cols=96 Identities=20% Similarity=0.388 Sum_probs=75.9
Q ss_pred EEEEecCceeEEchHHHHhhccHHHHHhhcCCCC-CCCCceEEecCCCCCHHHHHHHHHHHhhcCeeee--chhhHHhHH
Q 042020 7 LEVDVNGEETFMVDKKILASFSGRFNKLFSGLNG-STSNLKVIFHDFPGGAEGFELIARYCYSLGKIKI--TASNIVLLS 83 (538)
Q Consensus 7 v~i~V~g~~~F~lHK~vLas~S~yfr~lf~~~~~-e~~~~~v~L~~~pgG~e~felv~~FcY~~~~i~i--t~~NV~~L~ 83 (538)
|.+.| ||..|...|.-|.-..|+|+.|+..... +.+.....+-|=+ |+=|++|++|.=. |.+.+ +..++.+|+
T Consensus 7 vkLnv-GG~~F~Tsk~TLtk~dg~fk~m~e~~i~~~~d~s~~IFIDRS--pKHF~~ILNfmRd-Gdv~LPe~~kel~El~ 82 (230)
T KOG2716|consen 7 VKLNV-GGTIFKTSKSTLTKFDGFFKTMLETDIPVEKDESGCIFIDRS--PKHFDTILNFMRD-GDVDLPESEKELKELL 82 (230)
T ss_pred EEEec-CCeEEEeehhhhhhhhhHHHHHhhcCCccccCCcCcEEecCC--hhHHHHHHHhhhc-ccccCccchHHHHHHH
Confidence 56889 8899999999999999999999987642 2222222333333 6899999999996 66665 567788999
Q ss_pred HHHhhhcccCCCCCcchHHHHHHHHHHHhh
Q 042020 84 CAARFMEMGGDGHGNLNLIDQIEKSLEEIS 113 (538)
Q Consensus 84 cAA~~LqM~e~~~~~~NL~~~ce~FL~~~v 113 (538)
.=|+|..+++ |++.|+.=+....
T Consensus 83 ~EA~fYlL~~-------Lv~~C~~~i~~~~ 105 (230)
T KOG2716|consen 83 REAEFYLLDG-------LVELCQSAIARLI 105 (230)
T ss_pred HHHHHhhHHH-------HHHHHHHHhhhcc
Confidence 9999999997 9999999777653
No 17
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=96.45 E-value=0.0023 Score=54.57 Aligned_cols=83 Identities=24% Similarity=0.309 Sum_probs=59.8
Q ss_pred EEEEecCceeEEchHHHHh-hccHHHHHhhcCC---CCCCCCceEEecCCCCCHHHHHHHHHHHhhcCeeeec-hhhHHh
Q 042020 7 LEVDVNGEETFMVDKKILA-SFSGRFNKLFSGL---NGSTSNLKVIFHDFPGGAEGFELIARYCYSLGKIKIT-ASNIVL 81 (538)
Q Consensus 7 v~i~V~g~~~F~lHK~vLa-s~S~yfr~lf~~~---~~e~~~~~v~L~~~pgG~e~felv~~FcY~~~~i~it-~~NV~~ 81 (538)
|+|.| ||+.|.+-+..|. -...+|.+|+... ........+-| |=+ |+.|+.|++|.-+++.+... ...+..
T Consensus 1 V~lNV-GG~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fi-DRd--p~~F~~IL~ylr~~~~l~~~~~~~~~~ 76 (94)
T PF02214_consen 1 VRLNV-GGTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFI-DRD--PELFEYILNYLRTGGKLPIPDEICLEE 76 (94)
T ss_dssp EEEEE-TTEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEE-SS---HHHHHHHHHHHHHTSSB---TTS-HHH
T ss_pred CEEEE-CCEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEe-ccC--hhhhhHHHHHHhhcCccCCCCchhHHH
Confidence 68999 8999999999998 5567999999853 11223345544 333 78999999999984456553 567888
Q ss_pred HHHHHhhhcccC
Q 042020 82 LSCAARFMEMGG 93 (538)
Q Consensus 82 L~cAA~~LqM~e 93 (538)
+...|+|.++.+
T Consensus 77 l~~Ea~fy~l~~ 88 (94)
T PF02214_consen 77 LLEEAEFYGLDE 88 (94)
T ss_dssp HHHHHHHHT-HH
T ss_pred HHHHHHHcCCCc
Confidence 999999999986
No 18
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription]
Probab=96.39 E-value=0.012 Score=51.13 Aligned_cols=81 Identities=22% Similarity=0.407 Sum_probs=63.7
Q ss_pred EEEEecCceeEEchHHHHhhccHHHHHhhcCCCC--CCCCceEEecCCCCCHHHHHHHHHHH-----hhcC-----eeee
Q 042020 7 LEVDVNGEETFMVDKKILASFSGRFNKLFSGLNG--STSNLKVIFHDFPGGAEGFELIARYC-----YSLG-----KIKI 74 (538)
Q Consensus 7 v~i~V~g~~~F~lHK~vLas~S~yfr~lf~~~~~--e~~~~~v~L~~~pgG~e~felv~~Fc-----Y~~~-----~i~i 74 (538)
|.+.-++|++|-+-|- .|--||-+|+|+.+... +....+|.+++|| +-.+|.+..|. |++. +++|
T Consensus 19 VkLvS~Ddhefiikre-~AmtSgTiraml~gpg~~se~~~n~v~f~di~--shiLeKvc~Yl~Yk~rY~~~s~eiPeF~I 95 (112)
T KOG3473|consen 19 VKLVSSDDHEFIIKRE-HAMTSGTIRAMLSGPGVFSEAEKNEVYFRDIP--SHILEKVCEYLAYKVRYTNSSTEIPEFDI 95 (112)
T ss_pred eEeecCCCcEEEEeeh-hhhhhhHHHHHHcCCccccccccceEEeccch--HHHHHHHHHHhhheeeeccccccCCCCCC
Confidence 4555567788888555 78889999999996543 3345689999999 78999999876 5532 3578
Q ss_pred chhhHHhHHHHHhhhc
Q 042020 75 TASNIVLLSCAARFME 90 (538)
Q Consensus 75 t~~NV~~L~cAA~~Lq 90 (538)
-|+-+..|+.||+||+
T Consensus 96 ppemaleLL~aAn~Le 111 (112)
T KOG3473|consen 96 PPEMALELLMAANYLE 111 (112)
T ss_pred CHHHHHHHHHHhhhhc
Confidence 8999999999999996
No 19
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=95.88 E-value=0.041 Score=43.85 Aligned_cols=57 Identities=9% Similarity=0.249 Sum_probs=45.3
Q ss_pred EEEEecCceeEEchHHHHhhccHHHHHhhcCCCCCCCCceEEecCCCCCHHHHHHHHHHHhh
Q 042020 7 LEVDVNGEETFMVDKKILASFSGRFNKLFSGLNGSTSNLKVIFHDFPGGAEGFELIARYCYS 68 (538)
Q Consensus 7 v~i~V~g~~~F~lHK~vLas~S~yfr~lf~~~~~e~~~~~v~L~~~pgG~e~felv~~FcY~ 68 (538)
|++.-.+|+.|.+.+.+. ..|+.++.|+.+...+. . .|.|++++ +.+++.+++||+-
T Consensus 3 v~L~SsDg~~f~V~~~~a-~~S~~i~~ml~~~~~~~-~-~Ipl~~v~--~~~L~kViewc~~ 59 (62)
T PF03931_consen 3 VKLVSSDGQEFEVSREAA-KQSKTIKNMLEDLGDED-E-PIPLPNVS--SRILKKVIEWCEH 59 (62)
T ss_dssp EEEEETTSEEEEEEHHHH-TTSHHHHHHHHCTCCCG-T-EEEETTS---HHHHHHHHHHHHH
T ss_pred EEEEcCCCCEEEeeHHHH-HHhHHHHHHHhhhcccc-c-ccccCccC--HHHHHHHHHHHHh
Confidence 677777889999988855 69999999998643222 2 79999999 6799999999984
No 20
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=95.68 E-value=0.0011 Score=56.60 Aligned_cols=69 Identities=12% Similarity=0.025 Sum_probs=47.5
Q ss_pred hhhcccCChhHHHHHHHHHhhcCCChHHHHHHHHhhhhhcCCCcchHHHhHHHHHHHHhhcccCCCCCChhhHHHHH
Q 042020 194 FEDLMFLNVDFVDKVSKMMITQNFEHDLICKFLLHYRKSRFCSASQVEKCKMTEVVINLLSLLDRSTPSCKSLFNIF 270 (538)
Q Consensus 194 ~EDl~~L~~d~~~rvI~am~~~g~~~e~I~~aL~~Yak~~l~~~~~~~~r~LLE~Vv~lLp~~~~~~vs~~fL~~LL 270 (538)
.++|..||++.+..+++.-.-...+|..|+.+++.|+++..+. +......|++.|+ .+.+|..+|.+.+
T Consensus 34 ~~~f~~L~~~~l~~iL~~~~l~v~~E~~v~~av~~W~~~~~~~-r~~~~~~Ll~~iR-------~~~l~~~~L~~~v 102 (103)
T PF07707_consen 34 SDEFLELPFDQLIEILSSDDLNVSSEDDVFEAVLRWLKHNPEN-REEHLKELLSCIR-------FPLLSPEELQNVV 102 (103)
T ss_dssp SHHHHCS-HHHHHHHHHTSS--ECTCCCHHHHHHHHHHCTHHH-HTTTHHHHHCCCH-------HHCT-HHHHHHCC
T ss_pred chhhhcCCHHHHHHHHhccccccccHHHHHHHHHHHHHhCHHH-HHHHHHHHHHhCC-------cccCCHHHHHHHH
Confidence 4689999999988888765555557889999999999976541 1223446777764 4678888887654
No 21
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=95.66 E-value=0.013 Score=59.68 Aligned_cols=66 Identities=23% Similarity=0.342 Sum_probs=51.6
Q ss_pred cceeEEEEecCceeEEchHHHHhhccHHHHHhhcCCCCCC--CCceEEecCCCCCHHHHHHHHHHHhhcCee
Q 042020 3 VCCDLEVDVNGEETFMVDKKILASFSGRFNKLFSGLNGST--SNLKVIFHDFPGGAEGFELIARYCYSLGKI 72 (538)
Q Consensus 3 ~~~Dv~i~V~g~~~F~lHK~vLas~S~yfr~lf~~~~~e~--~~~~v~L~~~pgG~e~felv~~FcY~~~~i 72 (538)
+..||-|.. ....|++||+.|+++|++|+.+...+.... ....+..-+|. -++|+..+.|.|+ |+.
T Consensus 129 ~c~dldiiF-keTcfpahRA~laaRCpffK~l~nsd~e~~ae~i~dik~ag~d--m~~feafLh~l~t-gEf 196 (401)
T KOG2838|consen 129 VCGDLDIIF-KETCFPAHRAFLAARCPFFKILANSDEEPEAEDICDIKFAGFD--MDAFEAFLHSLIT-GEF 196 (401)
T ss_pred eeccceeee-eeccchHHHHHHHhhCcchhhhccCCCCcchhhhhhhhhhccC--hHHHHHHHHHHHh-ccc
Confidence 346888888 567899999999999999999987654322 22456777887 5799999999999 654
No 22
>smart00875 BACK BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.
Probab=94.76 E-value=0.041 Score=46.21 Aligned_cols=65 Identities=11% Similarity=-0.017 Sum_probs=47.3
Q ss_pred hhcccCChhHHHHHHHHHhhcCCChHHHHHHHHhhhhhcCCCcchHHHhHHHHHHHHhhcccCCCCCChhhHHH
Q 042020 195 EDLMFLNVDFVDKVSKMMITQNFEHDLICKFLLHYRKSRFCSASQVEKCKMTEVVINLLSLLDRSTPSCKSLFN 268 (538)
Q Consensus 195 EDl~~L~~d~~~rvI~am~~~g~~~e~I~~aL~~Yak~~l~~~~~~~~r~LLE~Vv~lLp~~~~~~vs~~fL~~ 268 (538)
++|..||.+.+..++....-....|..++++++.|+++... .. .....+++.|+ .+.+|..+|.+
T Consensus 35 ~~f~~L~~~~l~~iL~~d~l~v~~E~~v~~av~~W~~~~~~-~~-~~~~~ll~~ir-------~~~~~~~~l~~ 99 (101)
T smart00875 35 EEFLELSLEQLLSLLSSDDLNVPSEEEVFEAVLRWVKHDPE-RR-RHLPELLSHVR-------FPLLSPEYLLE 99 (101)
T ss_pred cHHhcCCHHHHHHHhCcccCCCCCHHHHHHHHHHHHHCCHH-HH-HHHHHHHHhCC-------CCCCCHHHHHh
Confidence 78999999998888877666656788999999999997642 11 12335666663 57788887754
No 23
>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones]
Probab=94.21 E-value=0.24 Score=47.30 Aligned_cols=98 Identities=16% Similarity=0.264 Sum_probs=74.0
Q ss_pred EEEEecCceeEEchHHHHhhccHHHHHhhcCCCCCCCCceEEecCCCCCHHHHHHHHHHHhhcCee--------------
Q 042020 7 LEVDVNGEETFMVDKKILASFSGRFNKLFSGLNGSTSNLKVIFHDFPGGAEGFELIARYCYSLGKI-------------- 72 (538)
Q Consensus 7 v~i~V~g~~~F~lHK~vLas~S~yfr~lf~~~~~e~~~~~v~L~~~pgG~e~felv~~FcY~~~~i-------------- 72 (538)
+.|.-.+|+.|.+-..+ +..|.-++.++.+..-..+...|-|+.+. +.+|..|++|||- -+-
T Consensus 7 ikL~SsDG~~f~ve~~~-a~~s~~i~~~~~~~~~~~~~~~IPl~nV~--~~iL~kVIewC~~-Hk~d~~~~~~~~~~~~~ 82 (162)
T KOG1724|consen 7 IKLESSDGEIFEVEEEV-ARQSQTISAHMIEDGCADENDPIPLPNVT--SKILKKVIEWCKK-HKDDDPANPEDKELPEE 82 (162)
T ss_pred EEEEccCCceeehhHHH-HHHhHHHHHHHHHcCCCccCCccccCccC--HHHHHHHHHHHHH-ccccccccccccccccc
Confidence 44555567889998775 57888999988754222222468888998 5799999999996 221
Q ss_pred -----------eechhhHHhHHHHHhhhcccCCCCCcchHHHHHHHHHHHhhcC
Q 042020 73 -----------KITASNIVLLSCAARFMEMGGDGHGNLNLIDQIEKSLEEISYW 115 (538)
Q Consensus 73 -----------~it~~NV~~L~cAA~~LqM~e~~~~~~NL~~~ce~FL~~~v~~ 115 (538)
.+...++..|.-||.||++.. |+..||......+-.
T Consensus 83 ~~i~~WD~~Flk~d~~tLfdli~AAnyLdi~g-------Ll~~~ck~va~mikg 129 (162)
T KOG1724|consen 83 TDIPEWDAEFLKVDQGTLFDLILAANYLDIKG-------LLDLTCKTVANMIKG 129 (162)
T ss_pred CCccHHHHHHHhcCHHHHHHHHHHhhhcccHH-------HHHHHHHHHHHHHcc
Confidence 234458889999999999995 999999999887743
No 24
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=89.76 E-value=0.39 Score=49.26 Aligned_cols=56 Identities=21% Similarity=0.386 Sum_probs=39.3
Q ss_pred eEEchHHHHhhccHHHHHhhcCCCC---C------CCCceEEecC--CCCCHHHHHH-HHHHHhhcCeeeec
Q 042020 16 TFMVDKKILASFSGRFNKLFSGLNG---S------TSNLKVIFHD--FPGGAEGFEL-IARYCYSLGKIKIT 75 (538)
Q Consensus 16 ~F~lHK~vLas~S~yfr~lf~~~~~---e------~~~~~v~L~~--~pgG~e~fel-v~~FcY~~~~i~it 75 (538)
++.+||.+.+++|++||.|+-..-+ | .....|.+.. || .+|.. .+.|.|| ..++++
T Consensus 262 eikahkai~aaRS~ffRnLL~RkiregeE~sdrtlr~PkRIifdE~I~P---kafA~i~lhclYT-D~lDlS 329 (401)
T KOG2838|consen 262 EIKAHKAIAAARSKFFRNLLLRKIREGEEGSDRTLRRPKRIIFDELIFP---KAFAPIFLHCLYT-DRLDLS 329 (401)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHhhcccccccccccCCceeechhhhcc---hhhhhhhhhhhee-cccchh
Confidence 4789999999999999998742111 1 1245677765 44 56654 5788999 687765
No 25
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=80.96 E-value=2 Score=46.16 Aligned_cols=75 Identities=13% Similarity=0.066 Sum_probs=58.7
Q ss_pred eeEEchHHHHhhccHHHHHhhcCCCCCCC-Cc---eEEecCCCCCHHHHHHHHHHHhhcCeeeechhhHHhHHHHHhhhc
Q 042020 15 ETFMVDKKILASFSGRFNKLFSGLNGSTS-NL---KVIFHDFPGGAEGFELIARYCYSLGKIKITASNIVLLSCAARFME 90 (538)
Q Consensus 15 ~~F~lHK~vLas~S~yfr~lf~~~~~e~~-~~---~v~L~~~pgG~e~felv~~FcY~~~~i~it~~NV~~L~cAA~~Lq 90 (538)
..+|+|..++ +++.||+.||++...|+. +. ...++.+. ....|.+++|.|+ .+-+|-+.-...++-.|+.|-
T Consensus 301 ~RyP~hla~i-~R~eyfk~mf~g~f~e~s~n~~~p~lslp~~~--~~vveI~lr~lY~-d~tdi~~~~A~dvll~ad~la 376 (516)
T KOG0511|consen 301 DRYPAHLARI-LRVEYFKSMFVGDFIESSVNDTRPGLSLPSLA--DVVVEIDLRNLYC-DQTDIIFDVASDVLLFADKLA 376 (516)
T ss_pred ccccHHHHHH-HHHHHHHHHhccchhhhcCCccccccccchHH--HHHHHHHHHHhhc-ccccchHHHHhhHHHHhhHhh
Confidence 4699999988 688899999998776642 22 23344444 4688999999999 799998888888888888887
Q ss_pred ccC
Q 042020 91 MGG 93 (538)
Q Consensus 91 M~e 93 (538)
...
T Consensus 377 l~~ 379 (516)
T KOG0511|consen 377 LAD 379 (516)
T ss_pred hhh
Confidence 764
No 26
>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only]
Probab=77.06 E-value=7.2 Score=42.58 Aligned_cols=83 Identities=22% Similarity=0.276 Sum_probs=60.0
Q ss_pred EEEEecCceeEEchHHHHhhcc--HHHHHhhcCCCCCC-CCceEEecCCCCCHHHHHHHHHHHhhcCeeeechhhHHhHH
Q 042020 7 LEVDVNGEETFMVDKKILASFS--GRFNKLFSGLNGST-SNLKVIFHDFPGGAEGFELIARYCYSLGKIKITASNIVLLS 83 (538)
Q Consensus 7 v~i~V~g~~~F~lHK~vLas~S--~yfr~lf~~~~~e~-~~~~v~L~~~pgG~e~felv~~FcY~~~~i~it~~NV~~L~ 83 (538)
|.+.| ||+.|.--+.-|+.-. .+|.+|+++..... ......+-| -+|+.|..+++|.-| +++.+..--...++
T Consensus 13 V~lNV-GGriF~Ts~qTL~~~~~DSffsaL~s~~~~s~~~~~~~iFID--RDPdlFaviLn~LRT-g~L~~~g~~~~~ll 88 (465)
T KOG2714|consen 13 VKLNV-GGRIFETSAQTLTWIPRDSFFSALLSGRINSLKDESGAIFID--RDPDLFAVILNLLRT-GDLDASGVFPERLL 88 (465)
T ss_pred EEEec-CceEEecchhhhhcCCcchHHHHHhcCccccccCCCCceEec--CCchHHHHHHHHHhc-CCCCCccCchhhhh
Confidence 56789 8999999999887766 79999997544322 222222223 337899999999999 89999554444444
Q ss_pred H-HHhhhcccC
Q 042020 84 C-AARFMEMGG 93 (538)
Q Consensus 84 c-AA~~LqM~e 93 (538)
- =|.|.++++
T Consensus 89 hdEA~fYGl~~ 99 (465)
T KOG2714|consen 89 HDEAMFYGLTP 99 (465)
T ss_pred hhhhhhcCcHH
Confidence 4 899999997
No 27
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=72.93 E-value=3.2 Score=34.54 Aligned_cols=35 Identities=20% Similarity=0.352 Sum_probs=28.7
Q ss_pred eechhhHHhHHHHHhhhcccCCCCCcchHHHHHHHHHHHhhc
Q 042020 73 KITASNIVLLSCAARFMEMGGDGHGNLNLIDQIEKSLEEISY 114 (538)
Q Consensus 73 ~it~~NV~~L~cAA~~LqM~e~~~~~~NL~~~ce~FL~~~v~ 114 (538)
.++...+..|..||.||+|.. |++.|+.++...+.
T Consensus 10 ~~~~~~L~~l~~AA~yL~I~~-------L~~~~~~~iA~~i~ 44 (78)
T PF01466_consen 10 DVDNDELFDLLNAANYLDIKG-------LLDLCCKYIANMIK 44 (78)
T ss_dssp -S-HHHHHHHHHHHHHHT-HH-------HHHHHHHHHHHHHT
T ss_pred HcCHHHHHHHHHHHHHHcchH-------HHHHHHHHHHHHhc
Confidence 347789999999999999996 99999999988773
No 28
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]
Probab=65.71 E-value=39 Score=31.39 Aligned_cols=115 Identities=14% Similarity=0.143 Sum_probs=75.2
Q ss_pred eEEEEecCceeEEchHHHHhhccHHHHHhhcCCCCCCCCceEEecCCCCCHHHHHHHHHHHhhcCeee------------
Q 042020 6 DLEVDVNGEETFMVDKKILASFSGRFNKLFSGLNGSTSNLKVIFHDFPGGAEGFELIARYCYSLGKIK------------ 73 (538)
Q Consensus 6 Dv~i~V~g~~~F~lHK~vLas~S~yfr~lf~~~~~e~~~~~v~L~~~pgG~e~felv~~FcY~~~~i~------------ 73 (538)
-|.|...+|+.|.+.+. .|-+|=.++.|+.... +. +..+.++.+. +..|..+.+||-- -+=.
T Consensus 3 ~i~l~s~dge~F~vd~~-iAerSiLikN~l~d~~-~~-n~p~p~pnVr--Ssvl~kv~ew~eh-h~~s~sede~d~~~rk 76 (158)
T COG5201 3 MIELESIDGEIFRVDEN-IAERSILIKNMLCDST-AC-NYPIPAPNVR--SSVLMKVQEWMEH-HTSSLSEDENDLEIRK 76 (158)
T ss_pred ceEEEecCCcEEEehHH-HHHHHHHHHHHhcccc-cc-CCCCcccchh--HHHHHHHHHHHHh-ccccCCCccChHhhhc
Confidence 35555446778999887 6889999999886532 21 2234556665 6799999999964 2211
Q ss_pred -------------echhhHHhHHHHHhhhcccCCCCCcchHHHHHHHHHHHhhcCchhhHHHHHhcccchHhhhhhhCch
Q 042020 74 -------------ITASNIVLLSCAARFMEMGGDGHGNLNLIDQIEKSLEEISYWTWPELLVALKQCQVLLPTTDYLFVP 140 (538)
Q Consensus 74 -------------it~~NV~~L~cAA~~LqM~e~~~~~~NL~~~ce~FL~~~v~~sw~~~la~L~~C~~l~~~Ae~~~iv 140 (538)
+...-...+.-||.||++.. |++.||+-....+-. ++ -...++.++|.
T Consensus 77 s~p~D~wdr~Fm~vDqemL~eI~laaNYL~ikp-------LLd~gCKivaemirg---------kS---peeir~tfni~ 137 (158)
T COG5201 77 SKPSDFWDRFFMEVDQEMLLEICLAANYLEIKP-------LLDLGCKIVAEMIRG---------KS---PEEIRETFNIE 137 (158)
T ss_pred cCCccHHHHHHHHhhHHHHHHHHHhhccccchH-------HHHHHHHHHHHHHcc---------CC---HHHHHHHhCCC
Confidence 12233456777999999997 999999888876632 22 23455667775
Q ss_pred hhhHH
Q 042020 141 EKVLS 145 (538)
Q Consensus 141 ~rci~ 145 (538)
..|..
T Consensus 138 ndfTp 142 (158)
T COG5201 138 NDFTP 142 (158)
T ss_pred CCCCH
Confidence 54443
No 29
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=65.20 E-value=2.1 Score=45.95 Aligned_cols=59 Identities=12% Similarity=0.088 Sum_probs=41.5
Q ss_pred eeEEEEecCceeEEchHHHHhhccHHHHHhhcCCCCCCCCceE-EecCCCCCHHHHHHHHHHHhh
Q 042020 5 CDLEVDVNGEETFMVDKKILASFSGRFNKLFSGLNGSTSNLKV-IFHDFPGGAEGFELIARYCYS 68 (538)
Q Consensus 5 ~Dv~i~V~g~~~F~lHK~vLas~S~yfr~lf~~~~~e~~~~~v-~L~~~pgG~e~felv~~FcY~ 68 (538)
.|++..+..|..|-+||+.|+++|.||..-+..-. . ...+| ...-+ +++|+..++|.|-
T Consensus 150 ~di~f~~q~g~~f~ahkfll~arSs~~~~k~v~~~-~-~~heI~~~~v~---~~~f~~flk~lyl 209 (516)
T KOG0511|consen 150 HDIDFLQQEGANFDAHKFLLEARSSNYFPKDVMFY-V-QGHEIEAHRVI---LSAFSPFLKQLYL 209 (516)
T ss_pred cchHHHhhccccccHHHHHHHhhhcccCchhhhhc-c-ccCchhhhhhh---HhhhhHHHHHHHH
Confidence 47777777788999999999999998855433211 0 11233 33334 5799999999997
No 30
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=63.97 E-value=10 Score=32.09 Aligned_cols=25 Identities=24% Similarity=0.405 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 042020 493 AQFRGMQRKVMELEKICSIMQTEMG 517 (538)
Q Consensus 493 ~~~~~m~~rv~eLe~~~~~m~~~~~ 517 (538)
.||+.||..|.+||..+.+||+..+
T Consensus 39 ~Em~~ir~~v~eLE~~h~kmK~~YE 63 (79)
T PF08581_consen 39 QEMQQIRQKVYELEQAHRKMKQQYE 63 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999998765
No 31
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=59.57 E-value=12 Score=24.53 Aligned_cols=18 Identities=17% Similarity=0.385 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 042020 494 QFRGMQRKVMELEKICSI 511 (538)
Q Consensus 494 ~~~~m~~rv~eLe~~~~~ 511 (538)
||++.|.|+++||++...
T Consensus 2 E~~rlr~rI~dLer~L~~ 19 (23)
T PF04508_consen 2 EMNRLRNRISDLERQLSE 19 (23)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 688999999999988654
No 32
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=56.14 E-value=38 Score=34.34 Aligned_cols=89 Identities=22% Similarity=0.347 Sum_probs=63.7
Q ss_pred EEEEecCceeEEchHHHHhhcc--HHHHHhhcCCCC---CCCCceEEecCCCCCHHHHHHHHHHHhhcCee-eechhhHH
Q 042020 7 LEVDVNGEETFMVDKKILASFS--GRFNKLFSGLNG---STSNLKVIFHDFPGGAEGFELIARYCYSLGKI-KITASNIV 80 (538)
Q Consensus 7 v~i~V~g~~~F~lHK~vLas~S--~yfr~lf~~~~~---e~~~~~v~L~~~pgG~e~felv~~FcY~~~~i-~it~~NV~ 80 (538)
|.+.+ ||+.|.--..-|.-+= ..+-+||.+... +.++.-+ |-|=+ |.-||-++.|.-. |.| ..+.-|+.
T Consensus 11 vrlni-gGk~f~TTidTlv~rEPDSMLa~MF~~~g~~~~~d~kGa~-lIDRs--p~yFepIlNyLr~-Gq~~~~s~i~~l 85 (302)
T KOG1665|consen 11 VRLNI-GGKKFCTTIDTLVIREPDSMLAAMFSGRGAMCQEDKKGAV-LIDRS--PKYFEPILNYLRD-GQIPSLSDIDCL 85 (302)
T ss_pred heeec-CCeEEEEeehhhcccCchHHHHHHHccCCCccccccCceE-EEccC--chhhHHHHHHHhc-CceeecCCccHH
Confidence 66788 8888887776666654 367889986322 2222333 33333 5799999999998 665 55678999
Q ss_pred hHHHHHhhhcccCCCCCcchHHHHHHH
Q 042020 81 LLSCAARFMEMGGDGHGNLNLIDQIEK 107 (538)
Q Consensus 81 ~L~cAA~~LqM~e~~~~~~NL~~~ce~ 107 (538)
.++.+|.|+|+-. |++..++
T Consensus 86 gvLeeArff~i~s-------L~~hle~ 105 (302)
T KOG1665|consen 86 GVLEEARFFQILS-------LKDHLED 105 (302)
T ss_pred HHHHHhhHHhhHh-------HHhHHhh
Confidence 9999999999985 7776665
No 33
>PF14363 AAA_assoc: Domain associated at C-terminal with AAA
Probab=55.27 E-value=7 Score=34.00 Aligned_cols=42 Identities=21% Similarity=0.453 Sum_probs=32.1
Q ss_pred cCCccccccchhhHHHHHHHHhcCCCCHHHHhhhccccccccC
Q 042020 371 LPDFTRQSHDGLYHTMDMYLQVHAGLCEEEKLRVCSALKYEKL 413 (538)
Q Consensus 371 lP~~aR~~~DgLYrAIDiyLk~Hp~ls~~Er~~lC~~ldc~KL 413 (538)
+|++..-....+|+|+..||.+....+. .|-++++.-|.+.+
T Consensus 30 I~E~~g~~~N~ly~a~~~YL~s~~s~~a-~rL~~~~~~~~~~~ 71 (98)
T PF14363_consen 30 IPEFDGLSRNELYDAAQAYLSSKISPSA-RRLKASKSKNSKNL 71 (98)
T ss_pred EEeCCCccccHHHHHHHHHHhhccCccc-ceeeecccCCCCce
Confidence 4444456688999999999999987665 77788877766653
No 34
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=54.20 E-value=15 Score=38.94 Aligned_cols=30 Identities=7% Similarity=0.385 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 042020 492 EAQFRGMQRKVMELEKICSIMQTEMGNMSQ 521 (538)
Q Consensus 492 r~~~~~m~~rv~eLe~~~~~m~~~~~k~~~ 521 (538)
|.||+.+..|+.||||+...++++++.+.+
T Consensus 288 RsElDe~~krL~ELrR~vr~L~k~l~~l~~ 317 (320)
T TIGR01834 288 RSELDEAHQRIQQLRREVKSLKKRLGDLEA 317 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 568999999999999999999999998765
No 35
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=52.40 E-value=31 Score=27.58 Aligned_cols=33 Identities=12% Similarity=0.287 Sum_probs=29.2
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042020 484 ITTTTEKFEAQFRGMQRKVMELEKICSIMQTEM 516 (538)
Q Consensus 484 ~~~e~~~lr~~~~~m~~rv~eLe~~~~~m~~~~ 516 (538)
++.|-+.||..+.....|+.+||.|+...|+-.
T Consensus 12 VrEEVevLK~~I~eL~~~n~~Le~EN~~Lk~~~ 44 (59)
T PF01166_consen 12 VREEVEVLKEQIAELEERNSQLEEENNLLKQNA 44 (59)
T ss_dssp -TTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 466889999999999999999999999998764
No 36
>KOG3840 consensus Uncharaterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=47.00 E-value=43 Score=35.37 Aligned_cols=82 Identities=17% Similarity=0.276 Sum_probs=55.4
Q ss_pred EEEEecCceeEEchHHHHhhccH-HHHHhhcCCC---CCCCCceEEe-cCCCCCHHHHHHHHHHHhhcCeeeec-hhhHH
Q 042020 7 LEVDVNGEETFMVDKKILASFSG-RFNKLFSGLN---GSTSNLKVIF-HDFPGGAEGFELIARYCYSLGKIKIT-ASNIV 80 (538)
Q Consensus 7 v~i~V~g~~~F~lHK~vLas~S~-yfr~lf~~~~---~e~~~~~v~L-~~~pgG~e~felv~~FcY~~~~i~it-~~NV~ 80 (538)
++..| .+..|-.-+++|-+.-. -+-.||..+. ...+..+.+. .|+. ...|..+++|--+ |.|.-- .-.|-
T Consensus 98 ~t~lv-d~~rf~v~q~llt~~p~Tmlg~mf~~g~~f~~pNErgEyeVAdGi~--s~vFRAILdYYks-G~iRCP~~vSvp 173 (438)
T KOG3840|consen 98 VCLLV-DQTRFLVSQRLLTSKPDTMLGRMFSMGADLVSPNERDEFEVADGMT--SSCFRAILDYYQS-GTMRCPSSVSVS 173 (438)
T ss_pred eEEEe-eeEEEEeeeeeecCCcchhhhhhhcccccccCCCcCCceehhcchh--HHHHHHHHHHHhc-CceeCCCCCchH
Confidence 56667 45678888887765543 2345665432 1223345555 4575 6899999999888 777553 35678
Q ss_pred hHHHHHhhhccc
Q 042020 81 LLSCAARFMEMG 92 (538)
Q Consensus 81 ~L~cAA~~LqM~ 92 (538)
.|+.|.+||-+.
T Consensus 174 ELrEACDYLlip 185 (438)
T KOG3840|consen 174 ELREACDYLLVP 185 (438)
T ss_pred HHHhhcceEEee
Confidence 899999999887
No 37
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=43.94 E-value=13 Score=37.88 Aligned_cols=89 Identities=13% Similarity=-0.032 Sum_probs=61.1
Q ss_pred eeEEchHHHHhhccHHHHHhhcCCCCCCCCceEEecCCCCCHHHHHHHHHHHhhcCeeeechhhHH---hHHHHHhhhcc
Q 042020 15 ETFMVDKKILASFSGRFNKLFSGLNGSTSNLKVIFHDFPGGAEGFELIARYCYSLGKIKITASNIV---LLSCAARFMEM 91 (538)
Q Consensus 15 ~~F~lHK~vLas~S~yfr~lf~~~~~e~~~~~v~L~~~pgG~e~felv~~FcY~~~~i~it~~NV~---~L~cAA~~LqM 91 (538)
..+..|+.+++++|+-|+.|+.....+.....+.+.+.. ++.|+.+..|-|. ..=.-+..++- .+.++|.-.+-
T Consensus 110 g~~~~~~~~~~a~~~V~~~~~~~d~~~~~~~~~~~~d~~--~~~~~~~~~F~~~-~s~~~~~~~~~~~~~~~a~~f~~~~ 186 (297)
T KOG1987|consen 110 GFLVAHKLVLVARSEVFEAMGKSDVFKESSKLITLLEEK--PEVLEALNGFQVL-PSQVSSVERIFEKHPDLAAAFKYKN 186 (297)
T ss_pred cEEEcCceEEEeeecceeeecccccchhccccccccccc--hhhHhhhceEEEe-ccchHHHHHhhcCChhhhhcccccc
Confidence 358999999999999999998865544333444555655 6788888999997 33222233332 55556655444
Q ss_pred cCCCCCcchHHHHHHHHHHHhh
Q 042020 92 GGDGHGNLNLIDQIEKSLEEIS 113 (538)
Q Consensus 92 ~e~~~~~~NL~~~ce~FL~~~v 113 (538)
. .|...|...|.+.+
T Consensus 187 ~-------~lk~~~~~~l~~~~ 201 (297)
T KOG1987|consen 187 R-------HLKLACMPVLLSLI 201 (297)
T ss_pred H-------HHHHHHHHHHHHHH
Confidence 4 49999999998765
No 38
>PF14077 WD40_alt: Alternative WD40 repeat motif
Probab=39.13 E-value=20 Score=27.30 Aligned_cols=19 Identities=21% Similarity=0.347 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 042020 496 RGMQRKVMELEKICSIMQT 514 (538)
Q Consensus 496 ~~m~~rv~eLe~~~~~m~~ 514 (538)
+..+.||.|||.|...+|+
T Consensus 14 e~l~vrv~eLEeEV~~LrK 32 (48)
T PF14077_consen 14 EQLRVRVSELEEEVRTLRK 32 (48)
T ss_pred chheeeHHHHHHHHHHHHH
Confidence 4578999999999888765
No 39
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=35.90 E-value=50 Score=30.96 Aligned_cols=36 Identities=22% Similarity=0.389 Sum_probs=27.3
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 042020 483 NITTTTEKFEAQFRGMQRKVMELEKICSIMQTEMGN 518 (538)
Q Consensus 483 ~~~~e~~~lr~~~~~m~~rv~eLe~~~~~m~~~~~k 518 (538)
+++.|++.|-.+++.|+.||.+||.-++.....|+.
T Consensus 77 ~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~ 112 (140)
T PF10473_consen 77 TLRSEKENLDKELQKKQEKVSELESLNSSLENLLQE 112 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 346677778888888888888888888777665543
No 40
>PF10929 DUF2811: Protein of unknown function (DUF2811); InterPro: IPR021231 This is a bacterial family of uncharacterised proteins.
Probab=33.34 E-value=29 Score=27.62 Aligned_cols=19 Identities=16% Similarity=0.392 Sum_probs=16.2
Q ss_pred chhhHHHHHHHHhcCCCCH
Q 042020 380 DGLYHTMDMYLQVHAGLCE 398 (538)
Q Consensus 380 DgLYrAIDiyLk~Hp~ls~ 398 (538)
-.||.|+.-||+.||+-.+
T Consensus 8 e~L~~~m~~fie~hP~WDQ 26 (57)
T PF10929_consen 8 EDLHQAMKDFIETHPNWDQ 26 (57)
T ss_pred HHHHHHHHHHHHcCCCchH
Confidence 3589999999999998654
No 41
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=32.90 E-value=51 Score=37.73 Aligned_cols=165 Identities=15% Similarity=0.182 Sum_probs=91.8
Q ss_pred chhHHHHHHhhhhhhhhhccCCCCCChhHHHHHHHhcCCcccccc--chhhHHHHHHHHhcCCCCHHHHhhhcccccccc
Q 042020 335 SMSRLNKVAGLVDSYLAEVSPDSHLKPSKFVALLKVLPDFTRQSH--DGLYHTMDMYLQVHAGLCEEEKLRVCSALKYEK 412 (538)
Q Consensus 335 ~~~~~~~VakLvD~yLaEiA~D~~L~~~kF~~Lae~lP~~aR~~~--DgLYrAIDiyLk~Hp~ls~~Er~~lC~~ldc~K 412 (538)
.+....|+|.-++.-|. -||..|+++.=+.+-...+-+....| |.|=-|+..|+.--|.|..-||+-==-.+.-+-
T Consensus 300 ~P~~V~KiAasf~A~ly--~P~~dLsveEK~~~~r~~~~~~~ddH~RDALAAA~kAY~~yk~kl~~vEr~~~~~g~~~d~ 377 (652)
T COG2433 300 APETVKKIAASFNAVLY--TPDRDLSVEEKQEALRTLKISVSDDHERDALAAAYKAYLAYKPKLEKVERKLPELGIWKDV 377 (652)
T ss_pred ChHHHHHHHHHcCCccc--CCcccCCHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhH
Confidence 36677888887777664 68999999998888888888888887 899999999998777777777642111110000
Q ss_pred CCHHHHHHHHhCCCCchhHHHHHHHHhhhhccccCCCCCCcccCCCchhhHHHHHHhhhhHHHHHhhhcc-cccchHHHH
Q 042020 413 LSADALKHLAQNSRFPSRLAVISFINQQSKLKCLHPRTHRIVSSSNSLDAKVYIAEKADAAKIIQYAKRN-NITTTTEKF 491 (538)
Q Consensus 413 LS~eac~haaqNerlPlr~vvQvLf~eQ~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~~~l 491 (538)
. .+-.+ ==.-.|+.-++-...-+- +=|. -.++. ...+ .+...+... +....+.+ .+..||+.|
T Consensus 378 ~--rika~--VIrG~~l~eal~~~~e~~-~p~e-~~~~~---~~e~-~ei~~~~~~------i~~~~~~ve~l~~e~~~L 441 (652)
T COG2433 378 E--RIKAL--VIRGYPLAEALSKVKEEE-RPRE-KEGTE---EEER-REITVYEKR------IKKLEETVERLEEENSEL 441 (652)
T ss_pred H--HHHHH--eecCCcHHHHHHHHHhhh-cccc-ccccc---cccc-cchhHHHHH------HHHHHHHHHHHHHHHHHH
Confidence 0 00000 001122222221111110 0000 00000 0000 000111111 11111111 346789999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042020 492 EAQFRGMQRKVMELEKICSIMQTEMG 517 (538)
Q Consensus 492 r~~~~~m~~rv~eLe~~~~~m~~~~~ 517 (538)
+.+++.|+..+++||.+|..|+.++.
T Consensus 442 ~~~~ee~k~eie~L~~~l~~~~r~~~ 467 (652)
T COG2433 442 KRELEELKREIEKLESELERFRREVR 467 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988876
No 42
>PF10932 DUF2783: Protein of unknown function (DUF2783); InterPro: IPR021233 This is a bacterial family of uncharacterised protein.
Probab=30.88 E-value=39 Score=27.21 Aligned_cols=22 Identities=27% Similarity=0.671 Sum_probs=18.1
Q ss_pred cchhhHHHHHHHHhcCCCCHHHHhh
Q 042020 379 HDGLYHTMDMYLQVHAGLCEEEKLR 403 (538)
Q Consensus 379 ~DgLYrAIDiyLk~Hp~ls~~Er~~ 403 (538)
.|+.|.++ +.+|.+||++|-..
T Consensus 10 pD~fY~~L---i~aH~gLs~e~S~~ 31 (60)
T PF10932_consen 10 PDDFYEAL---IEAHRGLSDEQSAA 31 (60)
T ss_pred hhHHHHHH---HHHHhCCCHHHHHH
Confidence 39999885 88999999988543
No 43
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=30.18 E-value=1e+02 Score=28.57 Aligned_cols=56 Identities=5% Similarity=0.103 Sum_probs=36.2
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCC--CCCCCCCCCCCCCC
Q 042020 483 NITTTTEKFEAQFRGMQRKVMELEKICSIMQTEMGNMSQRRL--PWVGNTRYLPGLCS 538 (538)
Q Consensus 483 ~~~~e~~~lr~~~~~m~~rv~eLe~~~~~m~~~~~k~~~~~~--~~~~~~~~~p~~c~ 538 (538)
.+..++.+|..+++.|+..++++..|....+.-.+++..+.. ...+-+-|+|-+|+
T Consensus 78 eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~e~l~~~~~~~~~~~~~pS~p~~~~ 135 (135)
T KOG4196|consen 78 ELEKEKAELQQQVEKLKEENSRLRRELDAYKSKYEALQNSAVSVGASPVSPSSPEFAL 135 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCccccccC
Confidence 345566677777777777777777777777777777765532 22334556666663
No 44
>PF08776 VASP_tetra: VASP tetramerisation domain; InterPro: IPR014885 Vasodilator-stimulated phosphoprotein (VASP) is an actin cytoskeletal regulatory protein. This region corresponds to the tetramerisation domain which forms a right handed alpha helical coiled coil structure []. ; PDB: 1USE_A 1USD_A.
Probab=29.60 E-value=99 Score=22.94 Aligned_cols=14 Identities=7% Similarity=0.401 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHH
Q 042020 489 EKFEAQFRGMQRKV 502 (538)
Q Consensus 489 ~~lr~~~~~m~~rv 502 (538)
+++|.|+++|+..+
T Consensus 14 ~EvrkEl~K~K~EI 27 (40)
T PF08776_consen 14 EEVRKELQKVKEEI 27 (40)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444455554433
No 45
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=29.36 E-value=40 Score=33.59 Aligned_cols=34 Identities=21% Similarity=0.323 Sum_probs=25.8
Q ss_pred HHhcC--CccccccchhhHHHHHHHHhcCCCCHHHH
Q 042020 368 LKVLP--DFTRQSHDGLYHTMDMYLQVHAGLCEEEK 401 (538)
Q Consensus 368 ae~lP--~~aR~~~DgLYrAIDiyLk~Hp~ls~~Er 401 (538)
.+-+| +..+..-+|=|+||.-|||.||+==|.++
T Consensus 183 v~dlp~~~~p~~~g~gP~~AVe~ylr~~p~~yEiD~ 218 (237)
T COG3510 183 VNDLPGPVLPWRFGGGPYEAVEAYLREFPQDYEIDT 218 (237)
T ss_pred ccCCCCcccchhcCCChHHHHHHHHHhCCcccccch
Confidence 34456 66666799999999999999996545444
No 46
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=29.34 E-value=63 Score=33.80 Aligned_cols=42 Identities=14% Similarity=0.222 Sum_probs=31.7
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCC
Q 042020 482 NNITTTTEKFEAQFRGMQRKVMELEKICSIMQTEMGNMSQRR 523 (538)
Q Consensus 482 ~~~~~e~~~lr~~~~~m~~rv~eLe~~~~~m~~~~~k~~~~~ 523 (538)
.++..|.+.|...=++.|.++.+||||..-||+-|..+-+.|
T Consensus 251 E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e~~~~r 292 (294)
T KOG4571|consen 251 EALLGELEGLEKRNEELKDQASELEREIRYLKQLILEVYKKR 292 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344556666666677888999999999999999887665533
No 47
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=28.61 E-value=60 Score=34.48 Aligned_cols=28 Identities=11% Similarity=0.145 Sum_probs=19.3
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHH
Q 042020 483 NITTTTEKFEAQFRGMQRKVMELEKICS 510 (538)
Q Consensus 483 ~~~~e~~~lr~~~~~m~~rv~eLe~~~~ 510 (538)
.+++||..||.|.+..+.+|..||.+..
T Consensus 36 aLr~EN~~LKkEN~~Lk~eVerLE~e~l 63 (420)
T PF07407_consen 36 ALRMENHSLKKENNDLKIEVERLENEML 63 (420)
T ss_pred hHHHHhHHHHHHHHHHHHHHHHHHHHhh
Confidence 3566777777777777777777775544
No 48
>PRK15322 invasion protein OrgB; Provisional
Probab=27.39 E-value=1.5e+02 Score=29.65 Aligned_cols=81 Identities=16% Similarity=0.105 Sum_probs=53.9
Q ss_pred chhHHHHHHHHHHHhcccc--ccc----hhHHHHHHhhhhhhhhhccCCC--------------------CCChhHHHHH
Q 042020 314 YDVSLVLRLVKVFLFENRS--WLS----MSRLNKVAGLVDSYLAEVSPDS--------------------HLKPSKFVAL 367 (538)
Q Consensus 314 ydvd~v~ri~~~Fl~~~~~--~~~----~~~~~~VakLvD~yLaEiA~D~--------------------~L~~~kF~~L 367 (538)
=++|...++++.|+..... .+- +..-+.-+.-+-.||.+..+++ ..+|..|++.
T Consensus 90 d~pd~LL~~le~Wl~~l~~~~~pL~l~lP~~ak~~~~~L~~~l~e~w~~~~~i~yhd~~rFV~~~g~qIaEFsPq~~v~~ 169 (210)
T PRK15322 90 DHPETLLTVLDEWLRDFDKPEGQLFLTLPVNAKKDHQKLMVLLMENWPGTFNLKYHQEQRFIMSCGDQIAEFSPEQFVET 169 (210)
T ss_pred cCHHHHHHHHHHHHHhCccccCceeEecChhhhhhHHHHHHHHHHhcCCCeEEEEcCCCceEEEeCCchhccCHHHHHHH
Confidence 3578899999999975432 110 2334445555566666655433 4689999999
Q ss_pred HHh--------cCCccccccchhhHHHHHHHHhcC
Q 042020 368 LKV--------LPDFTRQSHDGLYHTMDMYLQVHA 394 (538)
Q Consensus 368 ae~--------lP~~aR~~~DgLYrAIDiyLk~Hp 394 (538)
|+. +|.-+|...||=-.|.=-|||.|-
T Consensus 170 a~~~l~~~~d~~~~~~r~ls~~~l~al~~~~~~~~ 204 (210)
T PRK15322 170 AVGVIKHHLDELPQDCRTISDNAINALIDEWKTKT 204 (210)
T ss_pred HHHHHHhCccchHHHHHHHhHHHHHHHHHHHHHhc
Confidence 986 566777777777777766777663
No 49
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=27.17 E-value=1e+02 Score=29.60 Aligned_cols=32 Identities=13% Similarity=0.290 Sum_probs=15.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042020 486 TTTEKFEAQFRGMQRKVMELEKICSIMQTEMG 517 (538)
Q Consensus 486 ~e~~~lr~~~~~m~~rv~eLe~~~~~m~~~~~ 517 (538)
.+|+.|+.+++++..+...+|.++..|-+-|+
T Consensus 118 ~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~ 149 (161)
T TIGR02894 118 KRNEELEKELEKLRQRLSTIEEDYQTLIDIMD 149 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555544443
No 50
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]
Probab=26.87 E-value=2.4e+02 Score=31.68 Aligned_cols=90 Identities=13% Similarity=0.233 Sum_probs=55.2
Q ss_pred eEEEEecCceeEEchHHHHhhc-cHHHHHhhcCCCCC----------CCCceEEecCCCCCHHHHHHHHHHHhhcCeeee
Q 042020 6 DLEVDVNGEETFMVDKKILASF-SGRFNKLFSGLNGS----------TSNLKVIFHDFPGGAEGFELIARYCYSLGKIKI 74 (538)
Q Consensus 6 Dv~i~V~g~~~F~lHK~vLas~-S~yfr~lf~~~~~e----------~~~~~v~L~~~pgG~e~felv~~FcY~~~~i~i 74 (538)
-|.|.| ||..+.+-+..|... =.++.++......+ ....+.-+ +-.|.+|..|++|-+| |++..
T Consensus 32 ~i~lNV-GG~r~~l~~~tL~~~P~TRL~rL~~~~~~~~~l~~cDdyd~~~~EyfF---DR~P~~F~~Vl~fYrt-GkLH~ 106 (477)
T KOG3713|consen 32 RVRLNV-GGTRHELYWSTLKRFPLTRLGRLADCNSHEERLELCDDYDPVTNEYFF---DRHPGAFAYVLNFYRT-GKLHV 106 (477)
T ss_pred EEEEee-CCeeEEehHHHHhhCchhHHHHHHhcccchhhhhhccccCcccCeeee---ccChHHHHHHHHHHhc-Ceecc
Confidence 477889 899999988887662 12344444321111 11223333 3335699999999999 89987
Q ss_pred chhhHHhHHH--HHhhhcccCCCCCcchHHHHHHH
Q 042020 75 TASNIVLLSC--AARFMEMGGDGHGNLNLIDQIEK 107 (538)
Q Consensus 75 t~~NV~~L~c--AA~~LqM~e~~~~~~NL~~~ce~ 107 (538)
|.+|..+.- =-+|-++++ +-++.||.
T Consensus 107 -p~~vC~~~F~eEL~yWgI~~------~~le~CC~ 134 (477)
T KOG3713|consen 107 -PADVCPLSFEEELDYWGIDE------AHLESCCW 134 (477)
T ss_pred -ccccchHHHHHHHHHhCCCh------hhhhHHhH
Confidence 555555433 345667776 35666654
No 51
>KOG2715 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=26.86 E-value=1.9e+02 Score=28.24 Aligned_cols=96 Identities=17% Similarity=0.195 Sum_probs=66.4
Q ss_pred EEEEecCceeEEchHHHHhhcc-HHHHHhhcCCCC---CCCCceEEecCCCCCHHHHHHHHHHHhhcCeeeechhhHHhH
Q 042020 7 LEVDVNGEETFMVDKKILASFS-GRFNKLFSGLNG---STSNLKVIFHDFPGGAEGFELIARYCYSLGKIKITASNIVLL 82 (538)
Q Consensus 7 v~i~V~g~~~F~lHK~vLas~S-~yfr~lf~~~~~---e~~~~~v~L~~~pgG~e~felv~~FcY~~~~i~it~~NV~~L 82 (538)
|.+.| ||.-|.--|.-|.--+ .++.+++...+. ..+....-|-|=+ |.-|.-|++|.-- |++-+++--=..+
T Consensus 23 VRlNV-GGt~f~TtktTl~rdp~sFl~rl~q~~~~l~sdrDetGAYlIDRD--P~~FgpvLNylRh-gklvl~~l~eeGv 98 (210)
T KOG2715|consen 23 VRLNV-GGTVFLTTKTTLPRDPKSFLYRLCQREKDLPSDRDETGAYLIDRD--PFYFGPVLNYLRH-GKLVLNKLSEEGV 98 (210)
T ss_pred EEEec-CCEEEEeeeeccccCcHHHHHHHHhcccCCCCCccccCceEeccC--cchHHHHHHHHhc-chhhhhhhhhhcc
Confidence 55678 8888999999888887 566666654321 1122223333333 6799999999997 8999998555568
Q ss_pred HHHHhhhcccCCCCCcchHHHHHHHHHHHhh
Q 042020 83 SCAARFMEMGGDGHGNLNLIDQIEKSLEEIS 113 (538)
Q Consensus 83 ~cAA~~LqM~e~~~~~~NL~~~ce~FL~~~v 113 (538)
+.-|+|...+. |+....+-+++..
T Consensus 99 L~EAefyn~~~-------li~likd~i~dRd 122 (210)
T KOG2715|consen 99 LEEAEFYNDPS-------LIQLIKDRIQDRD 122 (210)
T ss_pred chhhhccCChH-------HHHHHHHHHHHHh
Confidence 88888888775 7776666665543
No 52
>PHA01750 hypothetical protein
Probab=25.48 E-value=1.2e+02 Score=24.91 Aligned_cols=34 Identities=9% Similarity=0.253 Sum_probs=25.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 042020 485 TTTTEKFEAQFRGMQRKVMELEKICSIMQTEMGN 518 (538)
Q Consensus 485 ~~e~~~lr~~~~~m~~rv~eLe~~~~~m~~~~~k 518 (538)
..|-..||.+++..+.|.-+||+....+|+.+.|
T Consensus 41 ~~ELdNL~~ei~~~kikqDnl~~qv~eik~k~dk 74 (75)
T PHA01750 41 NSELDNLKTEIEELKIKQDELSRQVEEIKRKLDK 74 (75)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcc
Confidence 3466778888888888888888887777776544
No 53
>PLN03205 ATR interacting protein; Provisional
Probab=25.48 E-value=69 Score=35.17 Aligned_cols=39 Identities=8% Similarity=0.342 Sum_probs=32.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCC
Q 042020 486 TTTEKFEAQFRGMQRKVMELEKICSIMQTEMGNMSQRRL 524 (538)
Q Consensus 486 ~e~~~lr~~~~~m~~rv~eLe~~~~~m~~~~~k~~~~~~ 524 (538)
-|+..||.|+++...++.+.|+||+.+|+...|-+.+|.
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (652)
T PLN03205 134 LEIDRLKKELERVSKQLLDVEQECSQLKKGKNKEMESKN 172 (652)
T ss_pred hhHHHHHHHHHHHHHHHhhHHHHHHHHhcccccchhhcc
Confidence 478899999999999999999999999887666555543
No 54
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=25.27 E-value=1.5e+02 Score=22.70 Aligned_cols=30 Identities=17% Similarity=0.310 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 042020 490 KFEAQFRGMQRKVMELEKICSIMQTEMGNM 519 (538)
Q Consensus 490 ~lr~~~~~m~~rv~eLe~~~~~m~~~~~k~ 519 (538)
.-|..++.|..+|.+|+.+...+++++..|
T Consensus 22 rkk~~~~~le~~~~~L~~en~~L~~~i~~L 51 (54)
T PF07716_consen 22 RKKQREEELEQEVQELEEENEQLRQEIAQL 51 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567778888888888888888877665
No 55
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=25.24 E-value=45 Score=28.08 Aligned_cols=16 Identities=25% Similarity=0.343 Sum_probs=14.5
Q ss_pred chhhHHHHHHHHhcCC
Q 042020 380 DGLYHTMDMYLQVHAG 395 (538)
Q Consensus 380 DgLYrAIDiyLk~Hp~ 395 (538)
=.||-||+-||..|..
T Consensus 31 PQLYnAI~k~L~RHkF 46 (82)
T PF11123_consen 31 PQLYNAIGKLLDRHKF 46 (82)
T ss_pred hHHHHHHHHHHHHccc
Confidence 4799999999999985
No 56
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=24.06 E-value=1.2e+02 Score=26.67 Aligned_cols=36 Identities=19% Similarity=0.224 Sum_probs=29.2
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 042020 485 TTTTEKFEAQFRGMQRKVMELEKICSIMQTEMGNMS 520 (538)
Q Consensus 485 ~~e~~~lr~~~~~m~~rv~eLe~~~~~m~~~~~k~~ 520 (538)
.+.-+=.+.|-+-||.+++|||++-..|..|+.|..
T Consensus 7 R~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk 42 (96)
T PF11365_consen 7 RRQLQFVEEEAELLRRKLSELEDENKQLTEELNKYK 42 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455556778899999999999999999999975
No 57
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=22.70 E-value=79 Score=32.32 Aligned_cols=32 Identities=13% Similarity=0.289 Sum_probs=23.9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042020 485 TTTTEKFEAQFRGMQRKVMELEKICSIMQTEM 516 (538)
Q Consensus 485 ~~e~~~lr~~~~~m~~rv~eLe~~~~~m~~~~ 516 (538)
..-|.+|..|+.+.+..+.+|..|..++|.+=
T Consensus 92 R~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN 123 (248)
T PF08172_consen 92 RQRNAELEEELRKQQQTISSLRREVESLRADN 123 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44577777788888888888888877777763
No 58
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=22.34 E-value=1.2e+02 Score=29.61 Aligned_cols=39 Identities=15% Similarity=0.238 Sum_probs=29.0
Q ss_pred cchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhhhcccCC
Q 042020 485 TTTTEKFEAQ--FRGMQRKVMELEKICSIMQTEMGNMSQRR 523 (538)
Q Consensus 485 ~~e~~~lr~~--~~~m~~rv~eLe~~~~~m~~~~~k~~~~~ 523 (538)
..|..+|... ++.|+..+.+|-++|..|+..+.++....
T Consensus 106 eaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~k~g~ 146 (201)
T KOG4603|consen 106 EAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKNIKAGT 146 (201)
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455555544 67889999999999999999888875543
No 59
>PF15294 Leu_zip: Leucine zipper
Probab=21.28 E-value=1.2e+02 Score=31.62 Aligned_cols=36 Identities=11% Similarity=0.286 Sum_probs=30.1
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 042020 484 ITTTTEKFEAQFRGMQRKVMELEKICSIMQTEMGNM 519 (538)
Q Consensus 484 ~~~e~~~lr~~~~~m~~rv~eLe~~~~~m~~~~~k~ 519 (538)
+..|+..|+.|-+++|.|+..+|+.|..+-.|-.++
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl 165 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKL 165 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356899999999999999999999999886555444
No 60
>PF13075 DUF3939: Protein of unknown function (DUF3939)
Probab=20.86 E-value=75 Score=29.75 Aligned_cols=43 Identities=19% Similarity=0.201 Sum_probs=29.9
Q ss_pred ccchhHHHHHHHHHHHhccccc----cchhHHHHHHhhhhhhhhhccC
Q 042020 312 YIYDVSLVLRLVKVFLFENRSW----LSMSRLNKVAGLVDSYLAEVSP 355 (538)
Q Consensus 312 ~~ydvd~v~ri~~~Fl~~~~~~----~~~~~~~~VakLvD~yLaEiA~ 355 (538)
..|.+|.||+.|++|+...+.- .+...-..-.|| .+||.|+-+
T Consensus 76 ip~~iD~VQ~AVD~Y~~e~~~lPi~~~~~~~~Vd~~kL-~~YL~E~P~ 122 (140)
T PF13075_consen 76 IPKEIDKVQKAVDQYVKETGKLPIIPYDELRQVDFFKL-GHYLDELPK 122 (140)
T ss_pred CHHHHHHHHHHHHHHHHhcCccCCcCCCccceeeHHHH-HHHHhcCCC
Confidence 4588999999999999876521 123333445667 999998754
No 61
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=20.27 E-value=1.9e+02 Score=22.84 Aligned_cols=29 Identities=17% Similarity=0.368 Sum_probs=15.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042020 487 TTEKFEAQFRGMQRKVMELEKICSIMQTE 515 (538)
Q Consensus 487 e~~~lr~~~~~m~~rv~eLe~~~~~m~~~ 515 (538)
....|..+-+.++..+..|++++..++.+
T Consensus 34 ~~~~L~~en~~L~~~~~~L~~~~~~L~~e 62 (64)
T PF00170_consen 34 KVEELESENEELKKELEQLKKEIQSLKSE 62 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444455555555555555555555554
Done!