Query 042021
Match_columns 125
No_of_seqs 110 out of 863
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 13:10:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042021.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042021hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03148 Blue copper-like prot 100.0 3E-43 6.6E-48 261.1 12.6 107 17-124 14-120 (167)
2 PF02298 Cu_bind_like: Plastoc 100.0 6.8E-35 1.5E-39 195.4 4.8 82 34-115 1-85 (85)
3 PRK02710 plastocyanin; Provisi 98.9 4.9E-08 1.1E-12 68.6 11.5 88 22-122 27-119 (119)
4 PF00127 Copper-bind: Copper b 98.8 7E-08 1.5E-12 65.5 8.5 82 33-122 11-99 (99)
5 TIGR02656 cyanin_plasto plasto 98.6 5E-07 1.1E-11 61.4 9.0 89 25-122 2-99 (99)
6 TIGR03102 halo_cynanin halocya 98.5 1.1E-06 2.4E-11 62.0 9.6 88 22-122 22-115 (115)
7 COG3794 PetE Plastocyanin [Ene 98.5 1.2E-06 2.7E-11 62.8 9.0 84 26-123 40-128 (128)
8 TIGR02375 pseudoazurin pseudoa 98.4 3.6E-06 7.9E-11 59.3 8.9 74 46-124 16-89 (116)
9 TIGR02657 amicyanin amicyanin. 97.7 0.00025 5.4E-09 46.5 7.7 70 46-122 12-83 (83)
10 TIGR03095 rusti_cyanin rusticy 97.5 0.00072 1.6E-08 49.4 7.4 73 47-122 54-148 (148)
11 PF06525 SoxE: Sulfocyanin (So 97.0 0.0047 1E-07 47.3 8.2 77 48-124 89-188 (196)
12 TIGR03094 sulfo_cyanin sulfocy 96.1 0.053 1.2E-06 41.3 8.5 29 96-124 159-187 (195)
13 PF13473 Cupredoxin_1: Cupredo 96.1 0.0069 1.5E-07 41.0 3.3 63 46-121 36-104 (104)
14 PF00812 Ephrin: Ephrin; Inte 95.3 0.024 5.2E-07 41.5 3.8 75 48-122 25-144 (145)
15 COG4454 Uncharacterized copper 95.0 0.052 1.1E-06 40.3 4.8 79 45-123 63-158 (158)
16 KOG3858 Ephrin, ligand for Eph 94.5 0.38 8.2E-06 37.9 8.6 75 48-123 46-161 (233)
17 PRK02888 nitrous-oxide reducta 94.0 0.23 5E-06 44.1 7.3 67 46-123 556-634 (635)
18 PF07172 GRP: Glycine rich pro 94.0 0.027 5.9E-07 38.4 1.2 16 1-16 1-16 (95)
19 TIGR03096 nitroso_cyanin nitro 93.1 0.16 3.4E-06 36.8 4.0 55 45-108 61-121 (135)
20 TIGR02695 azurin azurin. Azuri 92.2 2 4.3E-05 30.8 8.6 29 91-120 91-124 (125)
21 PF00116 COX2: Cytochrome C ox 92.2 0.61 1.3E-05 32.7 5.9 66 45-121 46-119 (120)
22 TIGR02866 CoxB cytochrome c ox 91.5 0.38 8.2E-06 36.4 4.6 68 46-124 118-193 (201)
23 TIGR02376 Cu_nitrite_red nitri 90.7 1.1 2.3E-05 36.3 6.7 74 47-123 61-146 (311)
24 PF07732 Cu-oxidase_3: Multico 90.5 0.41 8.9E-06 33.3 3.7 76 46-124 27-116 (117)
25 PLN02604 oxidoreductase 90.0 3.6 7.7E-05 36.0 9.8 76 46-123 56-144 (566)
26 PRK10378 inactive ferrous ion 90.0 2.2 4.7E-05 35.8 8.2 27 92-123 91-117 (375)
27 PLN02354 copper ion binding / 88.2 5.7 0.00012 34.8 9.8 73 47-123 60-146 (552)
28 PLN00044 multi-copper oxidase- 87.0 6.3 0.00014 34.9 9.4 73 47-123 62-148 (596)
29 COG1622 CyoA Heme/copper-type 86.7 2.5 5.5E-05 33.4 6.2 86 28-124 118-213 (247)
30 PF02839 CBM_5_12: Carbohydrat 82.6 0.77 1.7E-05 25.8 1.2 18 40-57 1-18 (41)
31 MTH00047 COX2 cytochrome c oxi 82.0 2.1 4.6E-05 32.6 3.8 32 92-125 159-193 (194)
32 TIGR03388 ascorbase L-ascorbat 77.8 7.3 0.00016 33.8 6.2 76 46-124 33-122 (541)
33 PF10731 Anophelin: Thrombin i 76.4 1.9 4.2E-05 27.2 1.7 30 1-31 1-30 (65)
34 cd06555 ASCH_PF0470_like ASC-1 74.6 3.2 6.9E-05 29.0 2.6 29 47-75 30-60 (109)
35 PF05382 Amidase_5: Bacterioph 71.9 14 0.0003 27.0 5.5 48 31-82 62-114 (145)
36 PF10377 ATG11: Autophagy-rela 70.9 7.8 0.00017 27.6 4.0 18 47-64 41-58 (129)
37 MTH00140 COX2 cytochrome c oxi 70.4 4.7 0.0001 31.2 2.9 31 92-124 183-216 (228)
38 PF09451 ATG27: Autophagy-rela 69.6 4.7 0.0001 31.9 2.8 31 15-45 215-245 (268)
39 PF09792 But2: Ubiquitin 3 bin 65.7 24 0.00053 25.5 5.7 29 92-123 100-128 (143)
40 PTZ00047 cytochrome c oxidase 63.8 7.8 0.00017 28.9 2.8 31 92-124 116-149 (162)
41 PF12961 DUF3850: Domain of Un 63.3 4.4 9.6E-05 26.3 1.3 13 46-58 26-38 (72)
42 PF02157 Man-6-P_recep: Mannos 62.4 2.5 5.4E-05 34.1 0.0 37 24-61 211-247 (278)
43 MTH00168 COX2 cytochrome c oxi 61.9 8.5 0.00018 29.8 2.9 31 92-124 183-216 (225)
44 MTH00154 COX2 cytochrome c oxi 61.8 9.3 0.0002 29.7 3.1 31 92-124 183-216 (227)
45 MTH00139 COX2 cytochrome c oxi 61.0 8.4 0.00018 29.7 2.7 31 92-124 183-216 (226)
46 TIGR01165 cbiN cobalt transpor 61.0 5.5 0.00012 27.0 1.5 11 37-47 48-58 (91)
47 TIGR01432 QOXA cytochrome aa3 60.7 8.4 0.00018 29.5 2.6 31 92-124 173-206 (217)
48 MTH00117 COX2 cytochrome c oxi 60.5 11 0.00023 29.3 3.2 31 92-124 183-216 (227)
49 PRK13838 conjugal transfer pil 60.4 2.9 6.2E-05 31.3 0.0 15 46-60 48-62 (176)
50 TIGR01433 CyoA cytochrome o ub 60.3 8.5 0.00018 29.9 2.6 31 92-124 182-215 (226)
51 PLN00115 pollen allergen group 58.1 17 0.00037 25.7 3.6 32 1-32 1-34 (118)
52 MTH00129 COX2 cytochrome c oxi 57.8 10 0.00022 29.5 2.6 31 92-124 183-216 (230)
53 PF08980 DUF1883: Domain of un 57.6 2.1 4.5E-05 29.2 -1.0 76 46-124 8-88 (94)
54 KOG2315 Predicted translation 57.4 24 0.00052 31.2 5.1 61 45-105 211-277 (566)
55 MTH00023 COX2 cytochrome c oxi 55.4 12 0.00027 29.2 2.8 31 92-124 194-227 (240)
56 MTH00038 COX2 cytochrome c oxi 55.0 14 0.00029 28.7 3.0 31 92-124 183-216 (229)
57 PF02362 B3: B3 DNA binding do 54.0 6.6 0.00014 25.5 0.9 20 42-61 67-86 (100)
58 PLN02835 oxidoreductase 53.9 62 0.0013 28.3 7.1 77 46-122 61-147 (539)
59 MTH00098 COX2 cytochrome c oxi 53.5 14 0.0003 28.7 2.8 31 92-124 183-216 (227)
60 PF06291 Lambda_Bor: Bor prote 52.0 22 0.00048 24.3 3.3 19 13-31 9-27 (97)
61 PLN02191 L-ascorbate oxidase 51.0 50 0.0011 29.1 6.1 75 46-122 55-142 (574)
62 MTH00008 COX2 cytochrome c oxi 50.6 16 0.00035 28.4 2.7 31 92-124 183-216 (228)
63 PRK11528 hypothetical protein; 49.9 21 0.00046 28.3 3.4 35 32-67 26-69 (254)
64 TIGR01480 copper_res_A copper- 49.3 59 0.0013 28.8 6.3 86 34-121 488-586 (587)
65 MTH00051 COX2 cytochrome c oxi 49.2 16 0.00034 28.5 2.5 31 92-124 187-220 (234)
66 PF06462 Hyd_WA: Propeller; I 49.1 40 0.00086 18.1 3.4 25 92-116 3-27 (32)
67 PLN02168 copper ion binding / 49.0 79 0.0017 27.8 7.0 78 46-123 58-145 (545)
68 MTH00076 COX2 cytochrome c oxi 48.4 18 0.00038 28.1 2.7 31 92-124 183-216 (228)
69 TIGR01480 copper_res_A copper- 48.4 61 0.0013 28.7 6.2 74 46-123 77-162 (587)
70 smart00495 ChtBD3 Chitin-bindi 48.0 11 0.00024 21.0 1.1 18 40-57 1-18 (41)
71 TIGR03389 laccase laccase, pla 45.9 83 0.0018 27.3 6.7 74 46-123 35-122 (539)
72 MTH00027 COX2 cytochrome c oxi 44.9 23 0.0005 28.2 2.9 31 92-124 217-250 (262)
73 TIGR02228 sigpep_I_arch signal 44.6 1E+02 0.0022 22.5 6.1 25 47-71 59-87 (158)
74 PF14801 GCD14_N: tRNA methylt 44.4 19 0.00042 22.1 1.9 29 46-74 3-32 (54)
75 MTH00080 COX2 cytochrome c oxi 43.5 27 0.00058 27.3 3.0 31 92-124 186-219 (231)
76 PLN02792 oxidoreductase 42.4 1E+02 0.0022 27.0 6.7 75 47-121 49-133 (536)
77 MTH00185 COX2 cytochrome c oxi 41.8 27 0.00059 27.1 2.8 31 92-124 183-216 (230)
78 PF11008 DUF2846: Protein of u 38.6 1.2E+02 0.0027 20.5 6.2 27 45-71 41-67 (117)
79 PF00686 CBM_20: Starch bindin 38.5 44 0.00094 21.8 3.1 38 24-61 17-68 (96)
80 PF07731 Cu-oxidase_2: Multico 37.0 18 0.00039 24.8 1.0 33 92-124 105-137 (138)
81 PF04014 Antitoxin-MazE: Antid 35.0 14 0.00029 21.3 0.1 33 27-62 2-34 (47)
82 COG4043 Preprotein translocase 34.6 16 0.00035 25.4 0.5 16 45-60 30-45 (111)
83 PF13605 DUF4141: Domain of un 34.2 62 0.0013 19.9 3.0 17 17-33 13-29 (55)
84 PF15240 Pro-rich: Proline-ric 33.8 25 0.00054 26.7 1.4 15 7-21 2-16 (179)
85 KOG3416 Predicted nucleic acid 33.6 42 0.0009 24.3 2.4 32 25-59 40-72 (134)
86 PRK10525 cytochrome o ubiquino 33.0 56 0.0012 26.8 3.4 29 92-122 194-225 (315)
87 PF14326 DUF4384: Domain of un 32.9 36 0.00077 21.8 1.9 16 48-63 2-17 (83)
88 PF11604 CusF_Ec: Copper bindi 32.5 26 0.00056 22.1 1.1 21 42-62 36-56 (70)
89 PRK02898 cobalt transport prot 32.3 27 0.00058 24.1 1.2 11 37-47 48-58 (100)
90 PRK11479 hypothetical protein; 31.7 66 0.0014 25.9 3.6 21 39-59 50-75 (274)
91 cd02859 AMPKbeta_GBD_like AMP- 29.5 1.5E+02 0.0033 18.7 5.6 16 54-69 3-18 (79)
92 PLN02991 oxidoreductase 29.0 2.5E+02 0.0054 24.7 6.9 78 46-123 60-147 (543)
93 TIGR01451 B_ant_repeat conserv 28.5 42 0.00091 19.9 1.5 17 44-60 3-19 (53)
94 PF01345 DUF11: Domain of unkn 28.5 40 0.00086 20.9 1.5 21 40-60 28-48 (76)
95 PF02933 CDC48_2: Cell divisio 28.4 52 0.0011 20.0 2.0 16 46-61 16-31 (64)
96 COG5510 Predicted small secret 28.4 45 0.00097 19.6 1.6 14 8-21 9-22 (44)
97 KOG1263 Multicopper oxidases [ 28.0 3.1E+02 0.0068 24.3 7.4 76 47-125 61-149 (563)
98 COG1930 CbiN ABC-type cobalt t 27.5 73 0.0016 21.8 2.7 10 37-46 46-55 (97)
99 PF02553 CbiN: Cobalt transpor 26.2 53 0.0011 21.4 1.8 11 37-47 46-56 (74)
100 cd05829 Sortase_E Sortase E (S 25.7 1.4E+02 0.003 21.2 4.1 26 46-71 70-95 (144)
101 COG4446 Uncharacterized protei 25.4 57 0.0012 23.6 2.0 26 45-71 88-113 (141)
102 PRK09723 putative fimbrial-lik 25.2 4.4E+02 0.0096 22.7 10.0 43 22-68 26-69 (421)
103 COG3627 PhnJ Uncharacterized e 25.1 53 0.0011 26.0 1.9 24 91-114 257-280 (291)
104 TIGR02594 conserved hypothetic 23.8 48 0.001 23.4 1.4 17 48-64 73-89 (129)
105 PF02402 Lysis_col: Lysis prot 23.7 26 0.00057 20.7 -0.0 20 11-30 9-29 (46)
106 cd05810 CBM20_alpha_MTH Glucan 23.6 63 0.0014 21.4 1.8 37 24-60 17-63 (97)
107 COG1430 Uncharacterized conser 23.5 44 0.00096 23.8 1.1 20 42-61 104-123 (126)
108 COG5569 Uncharacterized conser 23.4 68 0.0015 22.3 2.0 26 44-69 79-106 (108)
109 PRK03760 hypothetical protein; 23.2 38 0.00083 23.6 0.7 17 43-59 100-116 (117)
110 PF12195 End_beta_barrel: Beta 22.8 71 0.0015 21.1 1.9 24 46-69 25-53 (83)
111 PF09065 Haemadin: Haemadin; 22.8 32 0.0007 17.7 0.2 12 104-115 7-18 (27)
112 cd05808 CBM20_alpha_amylase Al 22.6 65 0.0014 20.6 1.7 37 24-60 16-62 (95)
113 PF14478 DUF4430: Domain of un 22.4 50 0.0011 20.3 1.1 14 45-58 55-68 (68)
114 PTZ00213 asparagine synthetase 22.2 88 0.0019 26.1 2.7 21 24-46 198-227 (348)
115 cd04466 S1_YloQ_GTPase S1_YloQ 22.1 1.1E+02 0.0025 18.1 2.7 19 48-66 37-55 (68)
116 PF11766 Candida_ALS_N: Cell-w 21.9 35 0.00076 27.1 0.4 35 46-80 6-47 (249)
117 PF05257 CHAP: CHAP domain; I 21.6 77 0.0017 21.4 2.0 25 34-58 46-72 (124)
118 PRK10861 signal peptidase I; P 21.3 1.5E+02 0.0032 24.5 3.9 15 47-61 124-138 (324)
119 COG1188 Ribosome-associated he 21.2 1.3E+02 0.0027 20.8 3.0 20 46-65 46-65 (100)
120 PF04225 OapA: Opacity-associa 20.2 1.1E+02 0.0023 20.0 2.4 21 48-69 42-62 (85)
121 PF14699 hGDE_N: N-terminal do 20.1 1.9E+02 0.004 19.0 3.6 32 92-124 49-81 (86)
122 cd00645 AsnA Asparagine synthe 20.1 98 0.0021 25.5 2.6 38 24-70 187-233 (309)
No 1
>PLN03148 Blue copper-like protein; Provisional
Probab=100.00 E-value=3e-43 Score=261.14 Aligned_cols=107 Identities=39% Similarity=0.754 Sum_probs=100.8
Q ss_pred hccccceeEEEecCCCCCccCCCchhhcCCCeEEeCCEEEEEecCCceeEEEECcccCccCCCCCCccccccCceEEEec
Q 042021 17 ASTATSATKFIVGDDSGWTVGFDYQAWAKGKVFHVGDKLVFQYPVGAHNVFKVNGTAFQNCQKPPLREALTTGNDVIVLA 96 (125)
Q Consensus 17 ~l~~~~a~~~~VG~~~gW~~~~~Y~~Wa~~~~f~vGD~L~F~~~~~~hsV~~v~~~~y~~C~~~~~~~~~~~G~~~v~l~ 96 (125)
+...++|++|+|||+.||+.+.||++||++++|++||+|+|+|+++.|||+||++++|++|+.++|+..+++|++.|+|+
T Consensus 14 ~~~~~~a~~~~VGd~~GW~~~~~Y~~WA~~k~F~VGD~LvF~Y~~~~hnV~~V~~~~Y~~C~~~~pi~~~tsG~d~v~L~ 93 (167)
T PLN03148 14 SASATTATDHIVGANKGWNPGINYTLWANNQTFYVGDLISFRYQKTQYNVFEVNQTGYDNCTTEGAAGNWTSGKDFIPLN 93 (167)
T ss_pred hhhhccceEEEeCCCCCcCCCCChhHhhcCCCCccCCEEEEEecCCCceEEEEChHHcCcccCCCCcceecCCCcEEEec
Confidence 34444899999999999999899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccEEEEeCCCCCCccCCeEEEEecCC
Q 042021 97 TPGRKWYICGVRNHCNYGQKLVITVLPQ 124 (125)
Q Consensus 97 ~~G~~YFic~~~~HC~~Gmkl~I~V~~~ 124 (125)
++|++||||+ .+||++||||.|+|.+.
T Consensus 94 ~~G~~YFIcg-~ghC~~GmKl~I~V~~~ 120 (167)
T PLN03148 94 KAKRYYFICG-NGQCFNGMKVTILVHPL 120 (167)
T ss_pred CCccEEEEcC-CCccccCCEEEEEEcCC
Confidence 9999999999 68999999999999753
No 2
>PF02298 Cu_bind_like: Plastocyanin-like domain; InterPro: IPR003245 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved. This domain is found in a variety of plant cyanins and pollern allergen. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 3.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1JER_A 1WS7_A 1WS8_D 1F56_B 1X9R_B 1X9U_A 2CBP_A.
Probab=100.00 E-value=6.8e-35 Score=195.43 Aligned_cols=82 Identities=43% Similarity=0.944 Sum_probs=69.1
Q ss_pred CccCC---CchhhcCCCeEEeCCEEEEEecCCceeEEEECcccCccCCCCCCccccccCceEEEecCCccEEEEeCCCCC
Q 042021 34 WTVGF---DYQAWAKGKVFHVGDKLVFQYPVGAHNVFKVNGTAFQNCQKPPLREALTTGNDVIVLATPGRKWYICGVRNH 110 (125)
Q Consensus 34 W~~~~---~Y~~Wa~~~~f~vGD~L~F~~~~~~hsV~~v~~~~y~~C~~~~~~~~~~~G~~~v~l~~~G~~YFic~~~~H 110 (125)
|+.++ +|++||++++|++||+|+|+|+++.|||+||++++|++|+.++|+..+++|++.|+|+++|++||||++++|
T Consensus 1 W~~~~~~~~Y~~Wa~~~~F~vGD~LvF~y~~~~h~V~~V~~~~y~~C~~~~~~~~~~~G~~~v~L~~~G~~YFic~~~~H 80 (85)
T PF02298_consen 1 WTIPTNASNYTDWASGKTFRVGDTLVFNYDSGQHSVVEVSKADYDSCNSSNPISTYSTGNDTVTLTKPGPHYFICGVPGH 80 (85)
T ss_dssp SSSSSSTTHHHHHHCTS-BETTEEEEEE--TTTB-EEEESHHHHHHT--STTSEEE-SSEEEEEE-SSEEEEEE--STTT
T ss_pred CccCCCccchhHhhcCCcEeCCCEEEEEecCCCCeEEecChhhCccCCCCCceecccCCCEEEEeCCCcCeEEEeCCCCc
Confidence 88887 899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCC
Q 042021 111 CNYGQ 115 (125)
Q Consensus 111 C~~Gm 115 (125)
|+.||
T Consensus 81 C~~Gq 85 (85)
T PF02298_consen 81 CQKGQ 85 (85)
T ss_dssp TTTT-
T ss_pred ccccC
Confidence 99998
No 3
>PRK02710 plastocyanin; Provisional
Probab=98.89 E-value=4.9e-08 Score=68.60 Aligned_cols=88 Identities=23% Similarity=0.268 Sum_probs=58.3
Q ss_pred ceeEEE--ecCCCCC-ccCCCchhhcCCCeEEeCCEEEEEec-CCceeEEEECcccCccCCCCCCccccccCc-eEEEec
Q 042021 22 SATKFI--VGDDSGW-TVGFDYQAWAKGKVFHVGDKLVFQYP-VGAHNVFKVNGTAFQNCQKPPLREALTTGN-DVIVLA 96 (125)
Q Consensus 22 ~a~~~~--VG~~~gW-~~~~~Y~~Wa~~~~f~vGD~L~F~~~-~~~hsV~~v~~~~y~~C~~~~~~~~~~~G~-~~v~l~ 96 (125)
.+++++ +|.++|+ .+.|+ ..++.+||+|.|... ...||+.-- .. +....++ .....|. ..++++
T Consensus 27 ~a~~~~V~~~~~~~~~~F~P~------~i~v~~Gd~V~~~N~~~~~H~v~~~-~~--~~~~~~~--~~~~pg~t~~~tF~ 95 (119)
T PRK02710 27 SAETVEVKMGSDAGMLAFEPS------TLTIKAGDTVKWVNNKLAPHNAVFD-GA--KELSHKD--LAFAPGESWEETFS 95 (119)
T ss_pred ccceEEEEEccCCCeeEEeCC------EEEEcCCCEEEEEECCCCCceEEec-CC--ccccccc--cccCCCCEEEEEec
Confidence 444444 6655443 55553 679999999999874 468998632 11 1111111 1123343 478888
Q ss_pred CCccEEEEeCCCCCCccCCeEEEEec
Q 042021 97 TPGRKWYICGVRNHCNYGQKLVITVL 122 (125)
Q Consensus 97 ~~G~~YFic~~~~HC~~Gmkl~I~V~ 122 (125)
.+|.|-|+|. .|=+.||+..|.|.
T Consensus 96 ~~G~y~y~C~--~H~~~gM~G~I~V~ 119 (119)
T PRK02710 96 EAGTYTYYCE--PHRGAGMVGKITVE 119 (119)
T ss_pred CCEEEEEEcC--CCccCCcEEEEEEC
Confidence 9999999999 68889999999984
No 4
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=98.76 E-value=7e-08 Score=65.49 Aligned_cols=82 Identities=23% Similarity=0.276 Sum_probs=57.7
Q ss_pred CCccCCCchhhcCCCeEEeCCEEEEEe-cCCceeEEEECcc--cCccCCCCCC---ccccccCce-EEEecCCccEEEEe
Q 042021 33 GWTVGFDYQAWAKGKVFHVGDKLVFQY-PVGAHNVFKVNGT--AFQNCQKPPL---REALTTGND-VIVLATPGRKWYIC 105 (125)
Q Consensus 33 gW~~~~~Y~~Wa~~~~f~vGD~L~F~~-~~~~hsV~~v~~~--~y~~C~~~~~---~~~~~~G~~-~v~l~~~G~~YFic 105 (125)
+-.+.|. ..++++||+|.|.+ ....|++...+.. .-.......+ ......|.+ .++++++|.|.|+|
T Consensus 11 ~~~F~P~------~i~V~~G~tV~~~n~~~~~Hnv~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~tF~~~G~y~y~C 84 (99)
T PF00127_consen 11 DMAFDPS------EITVKAGDTVTFVNNDSMPHNVVFVADGMPAGADSDYVPPGDSSPLLAPGETYSVTFTKPGTYEYYC 84 (99)
T ss_dssp TSSEESS------EEEEETTEEEEEEEESSSSBEEEEETTSSHTTGGHCHHSTTCEEEEBSTTEEEEEEEESSEEEEEEE
T ss_pred ccEEeCC------EEEECCCCEEEEEECCCCCceEEEecccccccccccccCccccceecCCCCEEEEEeCCCeEEEEEc
Confidence 3555553 67899999999999 4779999988631 1111221111 112234443 67888999999999
Q ss_pred CCCCCCccCCeEEEEec
Q 042021 106 GVRNHCNYGQKLVITVL 122 (125)
Q Consensus 106 ~~~~HC~~Gmkl~I~V~ 122 (125)
. + |...||+..|.|.
T Consensus 85 ~-P-H~~~GM~G~i~V~ 99 (99)
T PF00127_consen 85 T-P-HYEAGMVGTIIVE 99 (99)
T ss_dssp T-T-TGGTTSEEEEEEE
T ss_pred C-C-CcccCCEEEEEEC
Confidence 9 8 9999999999984
No 5
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=98.61 E-value=5e-07 Score=61.40 Aligned_cols=89 Identities=20% Similarity=0.213 Sum_probs=59.6
Q ss_pred EEEecCC-CCCccCCCchhhcCCCeEEeCCEEEEEec-CCceeEEEECcccCc------cCCCCCCccccccCce-EEEe
Q 042021 25 KFIVGDD-SGWTVGFDYQAWAKGKVFHVGDKLVFQYP-VGAHNVFKVNGTAFQ------NCQKPPLREALTTGND-VIVL 95 (125)
Q Consensus 25 ~~~VG~~-~gW~~~~~Y~~Wa~~~~f~vGD~L~F~~~-~~~hsV~~v~~~~y~------~C~~~~~~~~~~~G~~-~v~l 95 (125)
+..+|.+ .+-.+.|+ ..++++||+|.|... ...|+++..+.. .. .............|.+ .+++
T Consensus 2 ~v~~g~~~g~~~F~P~------~i~v~~G~~V~~~N~~~~~H~~~~~~~~-~~~~~~~~~~~~~~~~~~~~pG~t~~~tF 74 (99)
T TIGR02656 2 TVKMGADKGALVFEPA------KISIAAGDTVEWVNNKGGPHNVVFDEDA-VPAGVKELAKSLSHKDLLNSPGESYEVTF 74 (99)
T ss_pred EEEEecCCCceeEeCC------EEEECCCCEEEEEECCCCCceEEECCCC-CccchhhhcccccccccccCCCCEEEEEe
Confidence 3456653 34777774 779999999999975 468999864321 00 0011000111233443 6888
Q ss_pred cCCccEEEEeCCCCCCccCCeEEEEec
Q 042021 96 ATPGRKWYICGVRNHCNYGQKLVITVL 122 (125)
Q Consensus 96 ~~~G~~YFic~~~~HC~~Gmkl~I~V~ 122 (125)
+.+|.|-|+|. +|++.||+..|.|.
T Consensus 75 ~~~G~y~y~C~--~H~~aGM~G~I~V~ 99 (99)
T TIGR02656 75 STPGTYTFYCE--PHRGAGMVGKITVE 99 (99)
T ss_pred CCCEEEEEEcC--CccccCCEEEEEEC
Confidence 89999999999 89999999999884
No 6
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=98.54 E-value=1.1e-06 Score=61.96 Aligned_cols=88 Identities=20% Similarity=0.322 Sum_probs=62.1
Q ss_pred ceeEEEec--CC-CCCccCCCchhhcCCCeEEeCCEEEEEecC--CceeEEEECcccCccCCCCCCccccccC-ceEEEe
Q 042021 22 SATKFIVG--DD-SGWTVGFDYQAWAKGKVFHVGDKLVFQYPV--GAHNVFKVNGTAFQNCQKPPLREALTTG-NDVIVL 95 (125)
Q Consensus 22 ~a~~~~VG--~~-~gW~~~~~Y~~Wa~~~~f~vGD~L~F~~~~--~~hsV~~v~~~~y~~C~~~~~~~~~~~G-~~~v~l 95 (125)
...+..|| ++ .+..+.|. ..++++||+|.|.++. ..|+|.-.....|++ .. .....| ...+++
T Consensus 22 ~~~~v~~G~~~~~g~~~F~P~------~ltV~~GdTVtw~~~~d~~~HnV~s~~~~~f~s----~~-~~~~~G~t~s~Tf 90 (115)
T TIGR03102 22 DEVTVDVGAEANGGGFAFDPP------AIRVDPGTTVVWEWTGEGGGHNVVSDGDGDLDE----SE-RVSEEGTTYEHTF 90 (115)
T ss_pred ceEEEEecccCCCCceeEeCC------EEEECCCCEEEEEECCCCCCEEEEECCCCCccc----cc-cccCCCCEEEEEe
Confidence 44667788 32 24777774 6799999999999863 689998533233441 11 112334 347899
Q ss_pred cCCccEEEEeCCCCCCccCCeEEEEec
Q 042021 96 ATPGRKWYICGVRNHCNYGQKLVITVL 122 (125)
Q Consensus 96 ~~~G~~YFic~~~~HC~~Gmkl~I~V~ 122 (125)
+++|.|-|+|.. |=..|||..|.|.
T Consensus 91 ~~~G~Y~Y~C~p--H~~~gM~G~I~V~ 115 (115)
T TIGR03102 91 EEPGIYLYVCVP--HEALGMKGAVVVE 115 (115)
T ss_pred cCCcEEEEEccC--CCCCCCEEEEEEC
Confidence 999999999994 7677999999984
No 7
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=98.50 E-value=1.2e-06 Score=62.84 Aligned_cols=84 Identities=24% Similarity=0.230 Sum_probs=60.5
Q ss_pred EEecC-CCCCccCCCchhhcCCCeEEeCCEEEEEecCC-ceeEEEECcccCccCCCCCCccccccC--c-eEEEecCCcc
Q 042021 26 FIVGD-DSGWTVGFDYQAWAKGKVFHVGDKLVFQYPVG-AHNVFKVNGTAFQNCQKPPLREALTTG--N-DVIVLATPGR 100 (125)
Q Consensus 26 ~~VG~-~~gW~~~~~Y~~Wa~~~~f~vGD~L~F~~~~~-~hsV~~v~~~~y~~C~~~~~~~~~~~G--~-~~v~l~~~G~ 100 (125)
..++. ...-.+.|. ..++.+||+|.|.+... .|||.-.... ++ ........+ . .+.++++||.
T Consensus 40 ~~~~~~~~~~vF~PA------~v~v~pGDTVtw~~~d~~~Hnv~~~~~~-----~~-~g~~~~~~~~~~s~~~Tfe~~G~ 107 (128)
T COG3794 40 VNKGVDIGAMVFEPA------EVTVKPGDTVTWVNTDSVGHNVTAVGGM-----DP-EGSGTLKAGINESFTHTFETPGE 107 (128)
T ss_pred eeeeccCcceeEcCc------EEEECCCCEEEEEECCCCCceEEEeCCC-----Cc-ccccccccCCCcceEEEecccce
Confidence 33443 345777774 78999999999999976 9999987554 11 111112222 2 2688899999
Q ss_pred EEEEeCCCCCCccCCeEEEEecC
Q 042021 101 KWYICGVRNHCNYGQKLVITVLP 123 (125)
Q Consensus 101 ~YFic~~~~HC~~Gmkl~I~V~~ 123 (125)
|.|+|.. |=..|||..|.|..
T Consensus 108 Y~Y~C~P--H~~~gM~G~IvV~~ 128 (128)
T COG3794 108 YTYYCTP--HPGMGMKGKIVVGE 128 (128)
T ss_pred EEEEecc--CCCCCcEEEEEeCC
Confidence 9999986 88999999999863
No 8
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=98.38 E-value=3.6e-06 Score=59.34 Aligned_cols=74 Identities=18% Similarity=0.141 Sum_probs=52.9
Q ss_pred CCeEEeCCEEEEEecCCceeEEEECcccCccCCCCCCccccccCceEEEecCCccEEEEeCCCCCCccCCeEEEEecCC
Q 042021 46 GKVFHVGDKLVFQYPVGAHNVFKVNGTAFQNCQKPPLREALTTGNDVIVLATPGRKWYICGVRNHCNYGQKLVITVLPQ 124 (125)
Q Consensus 46 ~~~f~vGD~L~F~~~~~~hsV~~v~~~~y~~C~~~~~~~~~~~G~~~v~l~~~G~~YFic~~~~HC~~Gmkl~I~V~~~ 124 (125)
..++.+||+|.|.+....|+|..+....-+. .++...-.+..-.++++++|.|-|+|. .|=..||+..|.|...
T Consensus 16 ~v~V~~GdTV~f~n~d~~Hnv~~~~~~~p~g---~~~~~s~~g~~~~~tF~~~G~Y~Y~C~--pH~~~GM~G~V~Vg~~ 89 (116)
T TIGR02375 16 YIRAAPGDTVTFVPTDKGHNVETIKGMIPEG---AEAFKSKINEEYTVTVTEEGVYGVKCT--PHYGMGMVALIQVGDP 89 (116)
T ss_pred EEEECCCCEEEEEECCCCeeEEEccCCCcCC---cccccCCCCCEEEEEeCCCEEEEEEcC--CCccCCCEEEEEECCC
Confidence 6799999999999987789998653211100 111111112223789999999999999 6999999999999763
No 9
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=97.74 E-value=0.00025 Score=46.54 Aligned_cols=70 Identities=17% Similarity=0.143 Sum_probs=47.7
Q ss_pred CCeEEeCCEEEEEecC-CceeEEEECcccCccCCCCCCccccccCc-eEEEecCCccEEEEeCCCCCCccCCeEEEEec
Q 042021 46 GKVFHVGDKLVFQYPV-GAHNVFKVNGTAFQNCQKPPLREALTTGN-DVIVLATPGRKWYICGVRNHCNYGQKLVITVL 122 (125)
Q Consensus 46 ~~~f~vGD~L~F~~~~-~~hsV~~v~~~~y~~C~~~~~~~~~~~G~-~~v~l~~~G~~YFic~~~~HC~~Gmkl~I~V~ 122 (125)
..++.+||+|.|.... ..|||...+... ..=+...+ ....|. ..+++++||+|-|.|.... .||..|.|.
T Consensus 12 ~i~v~~GdtVt~~N~d~~~Hnv~~~~g~~-~~~~~~~~--~~~~g~~~~~tf~~~G~y~y~C~~Hp----~M~G~v~V~ 83 (83)
T TIGR02657 12 ELHVKVGDTVTWINREAMPHNVHFVAGVL-GEAALKGP--MMKKEQAYSLTFTEAGTYDYHCTPHP----FMRGKVVVE 83 (83)
T ss_pred EEEECCCCEEEEEECCCCCccEEecCCCC-cccccccc--ccCCCCEEEEECCCCEEEEEEcCCCC----CCeEEEEEC
Confidence 5689999999999984 489998654221 01000111 113343 3789999999999999865 499999874
No 10
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=97.45 E-value=0.00072 Score=49.40 Aligned_cols=73 Identities=22% Similarity=0.288 Sum_probs=48.7
Q ss_pred CeEEeCCEEEEEecCC----ceeEEEECc-ccCc------------cCCCCCCccccccC-----ceEEEecCCccEEEE
Q 042021 47 KVFHVGDKLVFQYPVG----AHNVFKVNG-TAFQ------------NCQKPPLREALTTG-----NDVIVLATPGRKWYI 104 (125)
Q Consensus 47 ~~f~vGD~L~F~~~~~----~hsV~~v~~-~~y~------------~C~~~~~~~~~~~G-----~~~v~l~~~G~~YFi 104 (125)
.+++.||+|.|...+. .|+...... ..+. .|....+ ..+| +-+++++++|+|||.
T Consensus 54 I~v~~Gd~V~v~v~N~~~~~~H~~~I~~~g~~~~~~p~mdG~~~~~~~~i~p~---~~~g~~~~~~~tf~f~~aGtywyh 130 (148)
T TIGR03095 54 IVIPEGVTVHFTVINTDTDSGHNFDISKRGPPYPYMPGMDGLGFVAGTGFLPP---PKSGKFGYTDFTYHFSTAGTYWYL 130 (148)
T ss_pred EEEcCCCEEEEEEEeCCCCccccEEeecCCCccccccccCCCCccccCcccCC---CCCCccceeEEEEECCCCeEEEEE
Confidence 4678999999988753 677665432 1110 1211111 1122 236777899999999
Q ss_pred eCCCCCCccCCeEEEEec
Q 042021 105 CGVRNHCNYGQKLVITVL 122 (125)
Q Consensus 105 c~~~~HC~~Gmkl~I~V~ 122 (125)
|.+++|=+.||.-.|.|.
T Consensus 131 C~~pgH~~~GM~G~iiV~ 148 (148)
T TIGR03095 131 CTYPGHAENGMYGKIVVK 148 (148)
T ss_pred cCChhHHHCCCEEEEEEC
Confidence 999999999999988873
No 11
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=97.04 E-value=0.0047 Score=47.32 Aligned_cols=77 Identities=19% Similarity=0.318 Sum_probs=50.5
Q ss_pred eEEeCCEEEEEecCC---ceeEEEECc-ccCccCCCC---CCcc-------------ccccCceE--EEec-CCccEEEE
Q 042021 48 VFHVGDKLVFQYPVG---AHNVFKVNG-TAFQNCQKP---PLRE-------------ALTTGNDV--IVLA-TPGRKWYI 104 (125)
Q Consensus 48 ~f~vGD~L~F~~~~~---~hsV~~v~~-~~y~~C~~~---~~~~-------------~~~~G~~~--v~l~-~~G~~YFi 104 (125)
-+..|-.+.|+|... .|++..+.. .....+..- +.+. .-..|... +..+ .+|.||++
T Consensus 89 ~VPAGw~V~i~f~N~~~l~Hnl~iv~~~~~~p~~~~i~~DgkIl~~~G~s~~~~~~~GI~~G~s~~~~~~~l~aG~Ywlv 168 (196)
T PF06525_consen 89 YVPAGWNVQITFTNQESLPHNLVIVQNDTPTPNNPPISSDGKILLYVGASPGNYTSNGISSGQSASGVYNDLPAGYYWLV 168 (196)
T ss_pred EEcCCCEEEEEEEcCCCCCeeEEEEeCCCCCCCccccCCCCceeeeccCCCCccccCCccCCceeeEEEccCCCceEEEE
Confidence 445798999988643 899988844 433344211 1111 01133332 2223 68999999
Q ss_pred eCCCCCCccCCeEEEEecCC
Q 042021 105 CGVRNHCNYGQKLVITVLPQ 124 (125)
Q Consensus 105 c~~~~HC~~Gmkl~I~V~~~ 124 (125)
|+.++|=+.||-..+.|.++
T Consensus 169 C~ipGHA~sGMw~~LiVs~~ 188 (196)
T PF06525_consen 169 CGIPGHAESGMWGVLIVSSN 188 (196)
T ss_pred ccCCChhhcCCEEEEEEecC
Confidence 99999999999999988765
No 12
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=96.14 E-value=0.053 Score=41.32 Aligned_cols=29 Identities=28% Similarity=0.724 Sum_probs=25.9
Q ss_pred cCCccEEEEeCCCCCCccCCeEEEEecCC
Q 042021 96 ATPGRKWYICGVRNHCNYGQKLVITVLPQ 124 (125)
Q Consensus 96 ~~~G~~YFic~~~~HC~~Gmkl~I~V~~~ 124 (125)
.+||.||++|+.++|-+.||=..+.|.++
T Consensus 159 ~~~G~YwlvCgipGHAesGMw~~lIVSs~ 187 (195)
T TIGR03094 159 TSAGKYWLVCGITGHAESGMWAVVIVSSN 187 (195)
T ss_pred CCCeeEEEEcccCChhhcCcEEEEEEecC
Confidence 38999999999999999999888887765
No 13
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=96.08 E-value=0.0069 Score=40.96 Aligned_cols=63 Identities=17% Similarity=0.324 Sum_probs=29.9
Q ss_pred CCeEEeCC--EEEEEec-CCceeEEEECcccCccCCCCCCccccccCce-EEEe--cCCccEEEEeCCCCCCccCCeEEE
Q 042021 46 GKVFHVGD--KLVFQYP-VGAHNVFKVNGTAFQNCQKPPLREALTTGND-VIVL--ATPGRKWYICGVRNHCNYGQKLVI 119 (125)
Q Consensus 46 ~~~f~vGD--~L~F~~~-~~~hsV~~v~~~~y~~C~~~~~~~~~~~G~~-~v~l--~~~G~~YFic~~~~HC~~Gmkl~I 119 (125)
..+++.|+ +|.|+.. ...|++.. ++ -+.......|.+ ++++ .+||.|=|+|+.+.+ ||..|
T Consensus 36 ~i~v~~G~~v~l~~~N~~~~~h~~~i-~~--------~~~~~~l~~g~~~~~~f~~~~~G~y~~~C~~~~~----m~G~l 102 (104)
T PF13473_consen 36 TITVKAGQPVTLTFTNNDSRPHEFVI-PD--------LGISKVLPPGETATVTFTPLKPGEYEFYCTMHPN----MKGTL 102 (104)
T ss_dssp EEEEETTCEEEEEEEE-SSS-EEEEE-GG--------GTEEEEE-TT-EEEEEEEE-S-EEEEEB-SSS-T----TB---
T ss_pred EEEEcCCCeEEEEEEECCCCcEEEEE-CC--------CceEEEECCCCEEEEEEcCCCCEEEEEEcCCCCc----ceecc
Confidence 67999999 5555544 34676653 22 111122333443 4555 899999999998663 66665
Q ss_pred Ee
Q 042021 120 TV 121 (125)
Q Consensus 120 ~V 121 (125)
.|
T Consensus 103 iV 104 (104)
T PF13473_consen 103 IV 104 (104)
T ss_dssp --
T ss_pred cC
Confidence 54
No 14
>PF00812 Ephrin: Ephrin; InterPro: IPR001799 Ephrins are a family of proteins [] that are ligands of class V (EPH-related) receptor protein-tyrosine kinases (see IPR001426 from INTERPRO). These receptors and their ligands have been implicated in regulating neuronal axon guidance and in patterning of the developing nervous system and may also serve a patterning and compartmentalisation role outside of the nervous system as well. Ephrins are membrane-attached proteins of 205 to 340 residues. Attachment appears to be crucial for their normal function. Type-A ephrins are linked to the membrane via a glycosylphosphatidylinositol (GPI)-linkage, while type-B ephrins are type-I membrane proteins.; GO: 0016020 membrane; PDB: 3HEI_P 3CZU_B 3MBW_B 1KGY_E 1IKO_P 2WO3_B 2I85_A 2VSK_B 3GXU_B 2VSM_B ....
Probab=95.33 E-value=0.024 Score=41.46 Aligned_cols=75 Identities=23% Similarity=0.321 Sum_probs=45.4
Q ss_pred eEEeCCEEEEEecCC-----------ceeEEEECcccCccCCCC-CCccc------c-ccCceEEEec------------
Q 042021 48 VFHVGDKLVFQYPVG-----------AHNVFKVNGTAFQNCQKP-PLREA------L-TTGNDVIVLA------------ 96 (125)
Q Consensus 48 ~f~vGD~L~F~~~~~-----------~hsV~~v~~~~y~~C~~~-~~~~~------~-~~G~~~v~l~------------ 96 (125)
.++.||.|-+.=+.. ...+++|++++|+.|+.. .+... . ..|+..+++.
T Consensus 25 ~V~i~D~ldIiCP~~~~~~~~~~~~E~~~lY~Vs~~~y~~C~~~~~~~~l~~C~~P~~~~~~~kft~kFq~fSP~p~G~E 104 (145)
T PF00812_consen 25 EVRIGDYLDIICPHYEPGGPPPEEYEYYILYMVSEEGYESCSLTSRPRLLWECDRPEAPHGPKKFTIKFQEFSPFPLGLE 104 (145)
T ss_dssp EE-TTEEEEEEE--SSSSSSSCSSS-BEEEEEE-HHHHHHTBSSTSEEEEEEE-TTTSTTSSEEEEEESSSS-SSTTSSS
T ss_pred EecCCCEEEEECCCCCCCCCCCCCceEEEEEEEcHHHhcccCCCCCCcEEEEeCCCCCCCCCcEEEEEEEECCCCCCCee
Confidence 677999999965422 456899999999999953 33211 1 2344444331
Q ss_pred -CCc-cEEEEeCC-----------CCCCcc-CCeEEEEec
Q 042021 97 -TPG-RKWYICGV-----------RNHCNY-GQKLVITVL 122 (125)
Q Consensus 97 -~~G-~~YFic~~-----------~~HC~~-Gmkl~I~V~ 122 (125)
+|| .||||++- +|-|.. .|||.+.|.
T Consensus 105 F~pG~~YY~ISts~g~~~g~~~~~gG~C~~~~mkl~~~v~ 144 (145)
T PF00812_consen 105 FQPGHDYYYISTSTGTQEGLDNRRGGLCLSHNMKLRIKVG 144 (145)
T ss_dssp --TTEEEEEEEEESSSSTTTTSSBSCHHHEEEEEEEEECT
T ss_pred ecCCCeEEEEEccCCCCCCcccccccccCcCeeEEEEecC
Confidence 356 68888743 233854 699999874
No 15
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=95.02 E-value=0.052 Score=40.30 Aligned_cols=79 Identities=19% Similarity=0.256 Sum_probs=50.4
Q ss_pred CCCeEEeCCEEEEEecCC---ceeEEEECc---ccC-cc--------CCCCCCc--cccccCceEEEecCCccEEEEeCC
Q 042021 45 KGKVFHVGDKLVFQYPVG---AHNVFKVNG---TAF-QN--------CQKPPLR--EALTTGNDVIVLATPGRKWYICGV 107 (125)
Q Consensus 45 ~~~~f~vGD~L~F~~~~~---~hsV~~v~~---~~y-~~--------C~~~~~~--~~~~~G~~~v~l~~~G~~YFic~~ 107 (125)
+...++.|-++.|.-... .|....-.+ ..+ .. =+..+.+ .+..+|.-.+.++.+|.|=|+|.+
T Consensus 63 ~~~~v~aG~tv~~v~~n~~el~hef~~~~~~~~~~~~~~~~~~~Dme~d~~~~v~L~PG~s~elvv~ft~~g~ye~~C~i 142 (158)
T COG4454 63 SSFEVKAGETVRFVLKNEGELKHEFTMDAPDKNLEHVTHMILADDMEHDDPNTVTLAPGKSGELVVVFTGAGKYEFACNI 142 (158)
T ss_pred CcccccCCcEEeeeecCcccceEEEeccCccccchhHHHhhhCCccccCCcceeEeCCCCcEEEEEEecCCccEEEEecC
Confidence 466888999998877643 454443200 000 00 0111111 122333346788899999999999
Q ss_pred CCCCccCCeEEEEecC
Q 042021 108 RNHCNYGQKLVITVLP 123 (125)
Q Consensus 108 ~~HC~~Gmkl~I~V~~ 123 (125)
++|=+.||...|+|.+
T Consensus 143 PGHy~AGM~g~itV~p 158 (158)
T COG4454 143 PGHYEAGMVGEITVSP 158 (158)
T ss_pred CCcccCCcEEEEEeCC
Confidence 9999999999999975
No 16
>KOG3858 consensus Ephrin, ligand for Eph receptor tyrosine kinase [Signal transduction mechanisms]
Probab=94.46 E-value=0.38 Score=37.88 Aligned_cols=75 Identities=21% Similarity=0.314 Sum_probs=44.1
Q ss_pred eEEeCCEEEEEec---CC-c-----eeEEEECcccCccCCC-CCCccc------------------cccCceEEEecCCc
Q 042021 48 VFHVGDKLVFQYP---VG-A-----HNVFKVNGTAFQNCQK-PPLREA------------------LTTGNDVIVLATPG 99 (125)
Q Consensus 48 ~f~vGD~L~F~~~---~~-~-----hsV~~v~~~~y~~C~~-~~~~~~------------------~~~G~~~v~l~~~G 99 (125)
.+++||.|-+.=+ .+ . .=++.|++++|+.|+. +.+... ++.-...+.+ +||
T Consensus 46 ~v~igD~ldIiCP~~e~~~~~~~E~yilYmV~~~~y~~C~~~s~~~~~~~C~rP~~~~kfsikFq~ftP~p~G~EF-~pG 124 (233)
T KOG3858|consen 46 YVQIGDYLDIICPHYEEGGPEGYEYYILYMVSEEEYDLCELRSKPFKRWECNRPSTPLKFSIKFQRFTPFPLGFEF-QPG 124 (233)
T ss_pred EeccCCEEEEECCCCCCCCCCcceEEEEEEeChHHhhhhhccCCCcEEEEecCCCcchhhhhhheecCCCCCCccc-cCC
Confidence 5567999987543 21 1 2368999999999996 333211 1111112233 456
Q ss_pred -cEEEEeCC-----------CCCCcc-CCeEEEEecC
Q 042021 100 -RKWYICGV-----------RNHCNY-GQKLVITVLP 123 (125)
Q Consensus 100 -~~YFic~~-----------~~HC~~-Gmkl~I~V~~ 123 (125)
.|||||+- ++-|.. .||+.+.|..
T Consensus 125 ~~YY~IStStg~~~g~~~~~ggvc~~~~mk~~~~V~~ 161 (233)
T KOG3858|consen 125 HTYYYISTSTGDAEGLCNLRGGVCVTRNMKLLMKVGQ 161 (233)
T ss_pred CeEEEEeCCCccccccchhhCCEeccCCceEEEEecc
Confidence 57888743 345644 4888887764
No 17
>PRK02888 nitrous-oxide reductase; Validated
Probab=94.03 E-value=0.23 Score=44.12 Aligned_cols=67 Identities=16% Similarity=0.287 Sum_probs=43.9
Q ss_pred CCeEEeCCEEEEEecCC------ceeEEEECcccCccCCCCCCccccccCce---EEEecCCccEEEEeCCCCCCcc---
Q 042021 46 GKVFHVGDKLVFQYPVG------AHNVFKVNGTAFQNCQKPPLREALTTGND---VIVLATPGRKWYICGVRNHCNY--- 113 (125)
Q Consensus 46 ~~~f~vGD~L~F~~~~~------~hsV~~v~~~~y~~C~~~~~~~~~~~G~~---~v~l~~~G~~YFic~~~~HC~~--- 113 (125)
..++++||.+.|..++- .|+... ..| +.......|.. .|+.++||.|+++|+.- |..
T Consensus 556 ~i~Vk~GDeVt~~lTN~d~~~DViHGF~I---p~~------nI~~dv~PG~t~svtF~adkPGvy~~~Ctef--CGa~H~ 624 (635)
T PRK02888 556 EFTVKQGDEVTVIVTNLDKVEDLTHGFAI---PNY------GVNMEVAPQATASVTFTADKPGVYWYYCTWF--CHALHM 624 (635)
T ss_pred eEEecCCCEEEEEEEeCCcccccccceee---ccc------CccEEEcCCceEEEEEEcCCCEEEEEECCcc--cccCcc
Confidence 56899999999999862 344332 111 11112233332 56778999999999983 543
Q ss_pred CCeEEEEecC
Q 042021 114 GQKLVITVLP 123 (125)
Q Consensus 114 Gmkl~I~V~~ 123 (125)
+|...|.|.+
T Consensus 625 ~M~G~~iVep 634 (635)
T PRK02888 625 EMRGRMLVEP 634 (635)
T ss_pred cceEEEEEEe
Confidence 6998888876
No 18
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=93.98 E-value=0.027 Score=38.40 Aligned_cols=16 Identities=38% Similarity=0.378 Sum_probs=9.9
Q ss_pred CCchhHHHHHHHHHHH
Q 042021 1 MAFGRVFVLLLAIAAF 16 (125)
Q Consensus 1 Ma~~~~~~~~~~~~~~ 16 (125)
||+|++|+|+|+++++
T Consensus 1 MaSK~~llL~l~LA~l 16 (95)
T PF07172_consen 1 MASKAFLLLGLLLAAL 16 (95)
T ss_pred CchhHHHHHHHHHHHH
Confidence 9988877664443333
No 19
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=93.10 E-value=0.16 Score=36.84 Aligned_cols=55 Identities=13% Similarity=0.140 Sum_probs=34.3
Q ss_pred CCCeEEeCCEEEEEecC---CceeEEEECcccCccCCCCCCccccccCce---EEEecCCccEEEEeCCC
Q 042021 45 KGKVFHVGDKLVFQYPV---GAHNVFKVNGTAFQNCQKPPLREALTTGND---VIVLATPGRKWYICGVR 108 (125)
Q Consensus 45 ~~~~f~vGD~L~F~~~~---~~hsV~~v~~~~y~~C~~~~~~~~~~~G~~---~v~l~~~G~~YFic~~~ 108 (125)
+..+++.||.+.+.+.. -.|++.. .++. . ......|.. .++.++||.|.|+|+..
T Consensus 61 ~~I~VkaGD~Vtl~vtN~d~~~H~f~i---~~~g---i---s~~I~pGet~TitF~adKpG~Y~y~C~~H 121 (135)
T TIGR03096 61 EALVVKKGTPVKVTVENKSPISEGFSI---DAYG---I---SEVIKAGETKTISFKADKAGAFTIWCQLH 121 (135)
T ss_pred CEEEECCCCEEEEEEEeCCCCccceEE---CCCC---c---ceEECCCCeEEEEEECCCCEEEEEeCCCC
Confidence 45689999999887753 2455443 2221 1 112233443 46668999999999983
No 20
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=92.20 E-value=2 Score=30.81 Aligned_cols=29 Identities=10% Similarity=0.304 Sum_probs=22.0
Q ss_pred eEEEec----CCcc-EEEEeCCCCCCccCCeEEEE
Q 042021 91 DVIVLA----TPGR-KWYICGVRNHCNYGQKLVIT 120 (125)
Q Consensus 91 ~~v~l~----~~G~-~YFic~~~~HC~~Gmkl~I~ 120 (125)
++++++ ++|. |=|+|++|+|=. .||-.+.
T Consensus 91 ~svtF~~~~l~~g~~Y~f~CSFPGH~~-~MkG~l~ 124 (125)
T TIGR02695 91 TSVTFDVSKLSAGEDYTFFCSFPGHWA-MMRGTVK 124 (125)
T ss_pred EEEEEECCCCCCCCcceEEEcCCCcHH-hceEEEe
Confidence 356665 4675 999999999986 6887764
No 21
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=92.15 E-value=0.61 Score=32.68 Aligned_cols=66 Identities=17% Similarity=0.305 Sum_probs=42.1
Q ss_pred CCCeEEeCCEEEEEecCC--ceeEEEECcccCccCCCCCCccccccCce---EEEecCCccEEEEeCCCCCCccC---Ce
Q 042021 45 KGKVFHVGDKLVFQYPVG--AHNVFKVNGTAFQNCQKPPLREALTTGND---VIVLATPGRKWYICGVRNHCNYG---QK 116 (125)
Q Consensus 45 ~~~~f~vGD~L~F~~~~~--~hsV~~v~~~~y~~C~~~~~~~~~~~G~~---~v~l~~~G~~YFic~~~~HC~~G---mk 116 (125)
+...+..|+.+.|.-.+. .|+... ++.. .......|.. .++.++||.|++.|+. .|..| |+
T Consensus 46 ~~l~lp~g~~v~~~ltS~DViHsf~i-p~~~--------~k~d~~PG~~~~~~~~~~~~G~y~~~C~e--~CG~gH~~M~ 114 (120)
T PF00116_consen 46 NELVLPAGQPVRFHLTSEDVIHSFWI-PELG--------IKMDAIPGRTNSVTFTPDKPGTYYGQCAE--YCGAGHSFMP 114 (120)
T ss_dssp SEEEEETTSEEEEEEEESSS-EEEEE-TTCT--------EEEEEBTTCEEEEEEEESSSEEEEEEE-S--SSSTTGGG-E
T ss_pred ceecccccceEeEEEEcCCccccccc-cccC--------cccccccccceeeeeeeccCCcEEEcCcc--ccCcCcCCCe
Confidence 345778999999999853 666653 2211 0111123332 5778899999999998 68877 88
Q ss_pred EEEEe
Q 042021 117 LVITV 121 (125)
Q Consensus 117 l~I~V 121 (125)
..|.|
T Consensus 115 ~~v~V 119 (120)
T PF00116_consen 115 GKVIV 119 (120)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 88876
No 22
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=91.51 E-value=0.38 Score=36.43 Aligned_cols=68 Identities=15% Similarity=0.178 Sum_probs=42.5
Q ss_pred CCeEEeCCEEEEEecCC--ceeEEEECcccCccCCCCCCccccccCce---EEEecCCccEEEEeCCCCCCcc---CCeE
Q 042021 46 GKVFHVGDKLVFQYPVG--AHNVFKVNGTAFQNCQKPPLREALTTGND---VIVLATPGRKWYICGVRNHCNY---GQKL 117 (125)
Q Consensus 46 ~~~f~vGD~L~F~~~~~--~hsV~~v~~~~y~~C~~~~~~~~~~~G~~---~v~l~~~G~~YFic~~~~HC~~---Gmkl 117 (125)
...+.+|+.+.|.-++. .|+-.. +. + +.....-.|.. .++.++||.|+..|+. .|.. .|++
T Consensus 118 ~l~vp~g~~v~~~~ts~DV~Hsf~i-p~--~------~~k~da~PG~~~~~~~~~~~~G~y~~~c~e--~cG~~h~~M~~ 186 (201)
T TIGR02866 118 ELVVPAGTPVRLQVTSKDVIHSFWV-PE--L------GGKIDAIPGQYNALWFNADEPGVYYGYCAE--LCGAGHSLMLF 186 (201)
T ss_pred EEEEEcCCEEEEEEEeCchhhcccc-cc--c------CceEEecCCcEEEEEEEeCCCEEEEEEehh--hCCcCccCCeE
Confidence 34788999999988763 233221 11 0 00111123332 4678899999999998 4554 4999
Q ss_pred EEEecCC
Q 042021 118 VITVLPQ 124 (125)
Q Consensus 118 ~I~V~~~ 124 (125)
.|.|.++
T Consensus 187 ~v~v~~~ 193 (201)
T TIGR02866 187 KVVVVER 193 (201)
T ss_pred EEEEECH
Confidence 9998764
No 23
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=90.71 E-value=1.1 Score=36.33 Aligned_cols=74 Identities=24% Similarity=0.225 Sum_probs=47.0
Q ss_pred CeEEeCCEEEEEecCC-----ceeEEEECcccCccCCCCCCccccccCce---EEEecCCccEEEEeCC----CCCCccC
Q 042021 47 KVFHVGDKLVFQYPVG-----AHNVFKVNGTAFQNCQKPPLREALTTGND---VIVLATPGRKWYICGV----RNHCNYG 114 (125)
Q Consensus 47 ~~f~vGD~L~F~~~~~-----~hsV~~v~~~~y~~C~~~~~~~~~~~G~~---~v~l~~~G~~YFic~~----~~HC~~G 114 (125)
.+++.||.++.++.+. .|++..=-.... +..........|.+ .|+++.+|+|||-|.. ..|=..|
T Consensus 61 irv~~Gd~v~v~v~N~~~~~~~h~~h~H~~~~~---dg~~~~~~I~PG~t~ty~F~~~~~Gty~YH~H~~~~~~~q~~~G 137 (311)
T TIGR02376 61 IRVHEGDYVELTLINPPTNTMPHNVDFHAATGA---LGGAALTQVNPGETATLRFKATRPGAFVYHCAPPGMVPWHVVSG 137 (311)
T ss_pred EEEECCCEEEEEEEeCCCCCCceeeeecCCCcc---CCCCcceeECCCCeEEEEEEcCCCEEEEEEcCCCCchhHHhhcC
Confidence 5889999999887653 566653110000 00011111234443 5777899999999995 4577889
Q ss_pred CeEEEEecC
Q 042021 115 QKLVITVLP 123 (125)
Q Consensus 115 mkl~I~V~~ 123 (125)
|...+.|.+
T Consensus 138 l~G~liV~~ 146 (311)
T TIGR02376 138 MNGAIMVLP 146 (311)
T ss_pred cceEEEeec
Confidence 988888865
No 24
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=90.48 E-value=0.41 Score=33.29 Aligned_cols=76 Identities=14% Similarity=0.122 Sum_probs=46.9
Q ss_pred CCeEEeCCEEEEEecC---CceeEEEE----Ccc-cCcc--CCCCCCccccccCce---EEEecC-CccEEEEeCCCCCC
Q 042021 46 GKVFHVGDKLVFQYPV---GAHNVFKV----NGT-AFQN--CQKPPLREALTTGND---VIVLAT-PGRKWYICGVRNHC 111 (125)
Q Consensus 46 ~~~f~vGD~L~F~~~~---~~hsV~~v----~~~-~y~~--C~~~~~~~~~~~G~~---~v~l~~-~G~~YFic~~~~HC 111 (125)
..+++.||+|.+++.+ ..+++.-= +.. ..|. .....++ ..|.+ .++++. +|++||-|...+|=
T Consensus 27 tI~v~~Gd~v~i~~~N~l~~~~siH~HG~~~~~~~~~DG~~~~~~~~i---~pG~~~~Y~~~~~~~~Gt~wYH~H~~~~~ 103 (117)
T PF07732_consen 27 TIRVREGDTVRITVTNNLDEPTSIHWHGLHQPPSPWMDGVPGVTQCPI---APGESFTYEFTANQQAGTYWYHSHVHGQQ 103 (117)
T ss_dssp EEEEETTEEEEEEEEEESSSGBSEEEETSBSTTGGGGSGGTTTSGSSB---STTEEEEEEEEESSCSEEEEEEECSTTHH
T ss_pred EEEEEcCCeeEEEEEeccccccccccceeeeeeeeecCCcccccceeE---EeecceeeeEeeeccccceeEeeCCCchh
Confidence 4588999999999974 24555431 111 0111 0011122 23332 678887 99999999998854
Q ss_pred ccCCeEEEEecCC
Q 042021 112 NYGQKLVITVLPQ 124 (125)
Q Consensus 112 ~~Gmkl~I~V~~~ 124 (125)
..||--.+.|.+.
T Consensus 104 ~~GL~G~~iV~~~ 116 (117)
T PF07732_consen 104 VMGLYGAIIVEPP 116 (117)
T ss_dssp HTTEEEEEEEE-T
T ss_pred cCcCEEEEEEcCC
Confidence 4899988888765
No 25
>PLN02604 oxidoreductase
Probab=90.03 E-value=3.6 Score=35.98 Aligned_cols=76 Identities=14% Similarity=0.156 Sum_probs=47.2
Q ss_pred CCeEEeCCEEEEEecCC----ceeEEE-----ECcccCccCCCCCCc-cccccCce---EEEecCCccEEEEeCCCCCCc
Q 042021 46 GKVFHVGDKLVFQYPVG----AHNVFK-----VNGTAFQNCQKPPLR-EALTTGND---VIVLATPGRKWYICGVRNHCN 112 (125)
Q Consensus 46 ~~~f~vGD~L~F~~~~~----~hsV~~-----v~~~~y~~C~~~~~~-~~~~~G~~---~v~l~~~G~~YFic~~~~HC~ 112 (125)
..++..||+|+++.... .|++.. .....+|. ..... .....|.+ .|+++.+|++||=|-...|-.
T Consensus 56 ~i~~~~Gd~v~v~v~N~l~~~~~~iH~HG~~~~~~~~~DG--~~~~tq~~i~pg~s~~y~f~~~~~Gt~wyH~H~~~q~~ 133 (566)
T PLN02604 56 TILAQQGDTVIVELKNSLLTENVAIHWHGIRQIGTPWFDG--TEGVTQCPILPGETFTYEFVVDRPGTYLYHAHYGMQRE 133 (566)
T ss_pred cEEEECCCEEEEEEEeCCCCCCCCEEeCCCCCCCCccccC--CCccccCccCCCCeEEEEEEcCCCEEEEEeeCcHHHHh
Confidence 56899999999988753 233321 11000111 00000 11233443 677889999999999999999
Q ss_pred cCCeEEEEecC
Q 042021 113 YGQKLVITVLP 123 (125)
Q Consensus 113 ~Gmkl~I~V~~ 123 (125)
.||.-.|.|.+
T Consensus 134 ~Gl~G~liV~~ 144 (566)
T PLN02604 134 AGLYGSIRVSL 144 (566)
T ss_pred CCCeEEEEEEe
Confidence 99988887764
No 26
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=90.02 E-value=2.2 Score=35.80 Aligned_cols=27 Identities=26% Similarity=0.283 Sum_probs=18.6
Q ss_pred EEEecCCccEEEEeCCCCCCccCCeEEEEecC
Q 042021 92 VIVLATPGRKWYICGVRNHCNYGQKLVITVLP 123 (125)
Q Consensus 92 ~v~l~~~G~~YFic~~~~HC~~Gmkl~I~V~~ 123 (125)
.++| +||.|-|+|+. | ..|+-.|+|..
T Consensus 91 ~~~L-~pGtY~~~C~~--~--~~~~g~l~Vtg 117 (375)
T PRK10378 91 TANL-QPGEYDMTCGL--L--TNPKGKLIVKG 117 (375)
T ss_pred EEec-CCceEEeecCc--C--CCCCceEEEeC
Confidence 4555 79999999976 4 33466666653
No 27
>PLN02354 copper ion binding / oxidoreductase
Probab=88.21 E-value=5.7 Score=34.78 Aligned_cols=73 Identities=12% Similarity=-0.032 Sum_probs=45.9
Q ss_pred CeEEeCCEEEEEecCC--------ceeEEEECcccCc-----cCCCCCCccccccCceEEEe-cCCccEEEEeCCCCCCc
Q 042021 47 KVFHVGDKLVFQYPVG--------AHNVFKVNGTAFQ-----NCQKPPLREALTTGNDVIVL-ATPGRKWYICGVRNHCN 112 (125)
Q Consensus 47 ~~f~vGD~L~F~~~~~--------~hsV~~v~~~~y~-----~C~~~~~~~~~~~G~~~v~l-~~~G~~YFic~~~~HC~ 112 (125)
.++..||+|+.+.... -|.+.|-.....| .| |+.+..+=.-.|++ +.+|++||=+-...+-.
T Consensus 60 I~~~~GD~v~V~v~N~l~~~ttiHWHGi~q~~~~~~DGv~~TQc----pI~PG~sf~Y~F~~~~q~GT~WYHsH~~~Q~~ 135 (552)
T PLN02354 60 INSTSNNNIVINVFNNLDEPFLLTWSGIQQRKNSWQDGVPGTNC----PIPPGTNFTYHFQPKDQIGSYFYYPSTGMHRA 135 (552)
T ss_pred EEEeCCCEEEEEEEECCCCCcccccccccCCCCcccCCCcCCcC----CCCCCCcEEEEEEeCCCCcceEEecCccceec
Confidence 4889999999887643 3445443221112 23 22221111226777 47899999998888888
Q ss_pred cCCeEEEEecC
Q 042021 113 YGQKLVITVLP 123 (125)
Q Consensus 113 ~Gmkl~I~V~~ 123 (125)
.|+.-.|.|.+
T Consensus 136 ~Gl~G~lII~~ 146 (552)
T PLN02354 136 AGGFGGLRVNS 146 (552)
T ss_pred CCccceEEEcC
Confidence 89888877764
No 28
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=86.98 E-value=6.3 Score=34.93 Aligned_cols=73 Identities=18% Similarity=0.034 Sum_probs=46.8
Q ss_pred CeEEeCCEEEEEecCC--------ceeEEEECcccCc-----cCCCCCCccccccCceEEEe-cCCccEEEEeCCCCCCc
Q 042021 47 KVFHVGDKLVFQYPVG--------AHNVFKVNGTAFQ-----NCQKPPLREALTTGNDVIVL-ATPGRKWYICGVRNHCN 112 (125)
Q Consensus 47 ~~f~vGD~L~F~~~~~--------~hsV~~v~~~~y~-----~C~~~~~~~~~~~G~~~v~l-~~~G~~YFic~~~~HC~ 112 (125)
.++..||+|+.+.... -|.+.|-.....| .| |+....+=.-.|++ +.+|++||=+..+.+-.
T Consensus 62 I~~~~GD~v~V~V~N~L~~~ttIHWHGl~q~~t~w~DGv~~TQc----PI~PG~sftY~F~~~dq~GT~WYHsH~~~Q~~ 137 (596)
T PLN00044 62 LNVTTNWNLVVNVRNALDEPLLLTWHGVQQRKSAWQDGVGGTNC----AIPAGWNWTYQFQVKDQVGSFFYAPSTALHRA 137 (596)
T ss_pred EEEECCCEEEEEEEeCCCCCccEEECCccCCCCccccCCCCCcC----CcCCCCcEEEEEEeCCCCceeEeeccchhhhh
Confidence 4888999999887643 2445443221112 23 22221111226788 48999999998888888
Q ss_pred cCCeEEEEecC
Q 042021 113 YGQKLVITVLP 123 (125)
Q Consensus 113 ~Gmkl~I~V~~ 123 (125)
.|+...|.|.+
T Consensus 138 ~Gl~GalII~~ 148 (596)
T PLN00044 138 AGGYGAITINN 148 (596)
T ss_pred CcCeeEEEEcC
Confidence 89988888765
No 29
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=86.74 E-value=2.5 Score=33.40 Aligned_cols=86 Identities=20% Similarity=0.265 Sum_probs=52.5
Q ss_pred ecCCCCCccC-CCchhhcCC-CeEEeCCEEEEEecCC--ceeEEEECcccCccCCCCCCccccccCc---eEEEecCCcc
Q 042021 28 VGDDSGWTVG-FDYQAWAKG-KVFHVGDKLVFQYPVG--AHNVFKVNGTAFQNCQKPPLREALTTGN---DVIVLATPGR 100 (125)
Q Consensus 28 VG~~~gW~~~-~~Y~~Wa~~-~~f~vGD~L~F~~~~~--~hsV~~v~~~~y~~C~~~~~~~~~~~G~---~~v~l~~~G~ 100 (125)
+|-.-.|.+. |+|.-+..+ ..+.+|..+.|+-++. -|+-.. ++-.. ....-.|. ..++.+++|.
T Consensus 118 ~~~qw~W~f~Yp~~~~~t~n~l~lPv~~~V~f~ltS~DViHsF~I-P~l~~--------k~d~iPG~~~~~~~~~~~~G~ 188 (247)
T COG1622 118 TAYQWKWLFIYPDYGIATVNELVLPVGRPVRFKLTSADVIHSFWI-PQLGG--------KIDAIPGMTTELWLTANKPGT 188 (247)
T ss_pred EEEEEEEEEEccCcCccccceEEEeCCCeEEEEEEechhceeEEe-cCCCc--------eeeecCCceEEEEEecCCCeE
Confidence 4433345543 233334433 4899999999999874 344332 22110 00112222 2567889999
Q ss_pred EEEEeCCCCCCccC---CeEEEEecCC
Q 042021 101 KWYICGVRNHCNYG---QKLVITVLPQ 124 (125)
Q Consensus 101 ~YFic~~~~HC~~G---mkl~I~V~~~ 124 (125)
|+.+|+. .|..| |++.|.|.++
T Consensus 189 Y~g~Cae--~CG~gH~~M~~~v~vvs~ 213 (247)
T COG1622 189 YRGICAE--YCGPGHSFMRFKVIVVSQ 213 (247)
T ss_pred EEEEcHh--hcCCCcccceEEEEEEcH
Confidence 9999987 67665 9999998875
No 30
>PF02839 CBM_5_12: Carbohydrate binding domain; InterPro: IPR003610 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM5 from CAZY and CBM12 from CAZY. These modules have a core structure consisting of a 3-stranded meander beta-sheet, which contain six aromatic groups that may be important for binding. CBM5/12 is found in proteins such as chitinase A1, chitinase B [], and endoglucanase Z []. The overall topology of the CBM is structurally similar to the C-terminal chitin-binding domains (ChBD) of chitinase A1 and chitinase B, however the binding mechanism for the ChBD may be different from that of the CBM [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0005576 extracellular region; PDB: 1ED7_A 1W1V_A 1E15_B 1UR8_A 1E6Z_B 1E6P_A 1W1T_A 1W1P_B 1UR9_A 1E6R_A ....
Probab=82.55 E-value=0.77 Score=25.83 Aligned_cols=18 Identities=33% Similarity=1.042 Sum_probs=11.0
Q ss_pred chhhcCCCeEEeCCEEEE
Q 042021 40 YQAWAKGKVFHVGDKLVF 57 (125)
Q Consensus 40 Y~~Wa~~~~f~vGD~L~F 57 (125)
|.+|...+....||.+.|
T Consensus 1 ~p~W~~~~~Y~~Gd~V~~ 18 (41)
T PF02839_consen 1 YPAWDPGTTYNAGDRVSY 18 (41)
T ss_dssp --B--TTCEE-TT-EEEE
T ss_pred CCCcCCCCEEcCCCEEEE
Confidence 578999999999999995
No 31
>MTH00047 COX2 cytochrome c oxidase subunit II; Provisional
Probab=81.99 E-value=2.1 Score=32.59 Aligned_cols=32 Identities=22% Similarity=0.292 Sum_probs=26.6
Q ss_pred EEEecCCccEEEEeCCCCCCccC---CeEEEEecCCC
Q 042021 92 VIVLATPGRKWYICGVRNHCNYG---QKLVITVLPQA 125 (125)
Q Consensus 92 ~v~l~~~G~~YFic~~~~HC~~G---mkl~I~V~~~~ 125 (125)
.++.+++|.|+..|+. -|..| |++.|.|.+++
T Consensus 159 ~~~~~~~G~y~g~C~e--~CG~~H~~M~~~v~v~~~~ 193 (194)
T MTH00047 159 FFCPDRHGVFVGYCSE--LCGVGHSYMPIVIEVVDVD 193 (194)
T ss_pred EEEcCCCEEEEEEeeh--hhCcCcccCcEEEEEEcCC
Confidence 4567899999999987 68765 99999998764
No 32
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=77.78 E-value=7.3 Score=33.82 Aligned_cols=76 Identities=13% Similarity=0.088 Sum_probs=47.3
Q ss_pred CCeEEeCCEEEEEecCCc----eeEE-----EECcccCcc-CC-CCCCccccccCce---EEEecCCccEEEEeCCCCCC
Q 042021 46 GKVFHVGDKLVFQYPVGA----HNVF-----KVNGTAFQN-CQ-KPPLREALTTGND---VIVLATPGRKWYICGVRNHC 111 (125)
Q Consensus 46 ~~~f~vGD~L~F~~~~~~----hsV~-----~v~~~~y~~-C~-~~~~~~~~~~G~~---~v~l~~~G~~YFic~~~~HC 111 (125)
..++..||.|+++..... +++. +......|. -. ..-++ ..|.+ .|+++.+|++||-|-.+.|-
T Consensus 33 ~i~~~~Gd~v~v~v~N~l~~~~t~iHwHGl~~~~~~~~DG~~~vtq~~I---~PG~s~~y~f~~~~~Gt~wyH~H~~~q~ 109 (541)
T TIGR03388 33 TIRAQAGDTIVVELTNKLHTEGVVIHWHGIRQIGTPWADGTAGVTQCAI---NPGETFIYNFVVDRPGTYFYHGHYGMQR 109 (541)
T ss_pred eEEEEcCCEEEEEEEECCCCCCccEEecCcCCcCCcccCCCCccccCCc---CCCCEEEEEEEcCCCEEEEEEecchHHh
Confidence 458999999999886531 2222 211100111 00 00112 23332 67888999999999998899
Q ss_pred ccCCeEEEEecCC
Q 042021 112 NYGQKLVITVLPQ 124 (125)
Q Consensus 112 ~~Gmkl~I~V~~~ 124 (125)
..||...|.|.+.
T Consensus 110 ~~Gl~G~liV~~~ 122 (541)
T TIGR03388 110 SAGLYGSLIVDVP 122 (541)
T ss_pred hccceEEEEEecC
Confidence 9999988888753
No 33
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=76.42 E-value=1.9 Score=27.18 Aligned_cols=30 Identities=23% Similarity=0.371 Sum_probs=19.7
Q ss_pred CCchhHHHHHHHHHHHhccccceeEEEecCC
Q 042021 1 MAFGRVFVLLLAIAAFASTATSATKFIVGDD 31 (125)
Q Consensus 1 Ma~~~~~~~~~~~~~~~l~~~~a~~~~VG~~ 31 (125)
||+|.+++. ++++++.....+|-+|.-|+.
T Consensus 1 MA~Kl~via-lLC~aLva~vQ~APQYa~Gee 30 (65)
T PF10731_consen 1 MASKLIVIA-LLCVALVAIVQSAPQYAPGEE 30 (65)
T ss_pred CcchhhHHH-HHHHHHHHHHhcCcccCCCCC
Confidence 888777765 444444443447788888875
No 34
>cd06555 ASCH_PF0470_like ASC-1 homology domain, subfamily similar to Pyrococcus furiosus Pf0470. The ASCH domain, a small beta-barrel domain found in all three kingdoms of life, resembles the RNA-binding PUA domain and may also interact with RNA. ASCH has been proposed to function as an RNA-binding domain during coactivation, RNA-processing and the regulation of prokaryotic translation.
Probab=74.62 E-value=3.2 Score=28.95 Aligned_cols=29 Identities=28% Similarity=0.463 Sum_probs=17.8
Q ss_pred CeEEeCCEEEEEecC-CceeEEEECc-ccCc
Q 042021 47 KVFHVGDKLVFQYPV-GAHNVFKVNG-TAFQ 75 (125)
Q Consensus 47 ~~f~vGD~L~F~~~~-~~hsV~~v~~-~~y~ 75 (125)
+.|++||.|+|+=.. +.-=+++|.. ..|+
T Consensus 30 ~~ikvGD~I~f~~~~~~~~l~v~V~~i~~Y~ 60 (109)
T cd06555 30 QQIKVGDKILFNDLDTGQQLLVKVVDIRKYD 60 (109)
T ss_pred hcCCCCCEEEEEEcCCCcEEEEEEEEEEecC
Confidence 489999999996643 2223344443 4443
No 35
>PF05382 Amidase_5: Bacteriophage peptidoglycan hydrolase ; InterPro: IPR008044 This entry is represented by Bacteriophage SFi21, lysin (Cell wall hydrolase; 3.5.1.28 from EC). At least one of proteins in this entry, the Pal protein from the pneumococcal bacteriophage Dp-1 (O03979 from SWISSPROT) has been shown to be an N-acetylmuramoyl-L-alanine amidase []. According to the known modular structure of this and other peptidoglycan hydrolases from the pneumococcal system, the active site should reside within this domain while a C-terminal domain binds to the choline residues of the cell wall teichoic acids [, ].
Probab=71.87 E-value=14 Score=27.00 Aligned_cols=48 Identities=13% Similarity=0.216 Sum_probs=34.0
Q ss_pred CCCCccCCCchhhcCCCeEEeCCEEEEEec-----CCceeEEEECcccCccCCCCCC
Q 042021 31 DSGWTVGFDYQAWAKGKVFHVGDKLVFQYP-----VGAHNVFKVNGTAFQNCQKPPL 82 (125)
Q Consensus 31 ~~gW~~~~~Y~~Wa~~~~f~vGD~L~F~~~-----~~~hsV~~v~~~~y~~C~~~~~ 82 (125)
..||..-+.+.. ...+.||++++.-. +..|..+-+++...-.|+....
T Consensus 62 ~~G~~~I~~~~~----~~~q~GDI~I~g~~g~S~G~~GHtgif~~~~~iIhc~y~~~ 114 (145)
T PF05382_consen 62 KNGFKKISENVD----WNLQRGDIFIWGRRGNSAGAGGHTGIFMDNDTIIHCNYGAN 114 (145)
T ss_pred hCCcEEeccCCc----ccccCCCEEEEcCCCCCCCCCCeEEEEeCCCcEEEecCCCC
Confidence 456665544322 46899999998654 2369999988888889997533
No 36
>PF10377 ATG11: Autophagy-related protein 11; InterPro: IPR019460 This family consists of proteins involved in telomere maintenance. In Schizosaccharomyces pombe (fission yeast) this protein is called Taf1 (taz1 interacting factor) and is part of the telomere cap complex. In Saccharomyces cerevisiae (baker's yeast) this protein is called ATG11 and is known to be involved in vacuolar targeting and peroxisome degradation [, ].
Probab=70.94 E-value=7.8 Score=27.58 Aligned_cols=18 Identities=28% Similarity=0.484 Sum_probs=15.5
Q ss_pred CeEEeCCEEEEEecCCce
Q 042021 47 KVFHVGDKLVFQYPVGAH 64 (125)
Q Consensus 47 ~~f~vGD~L~F~~~~~~h 64 (125)
++|.+||.+.|-+++..|
T Consensus 41 ~~f~~GDlvLflpt~~~~ 58 (129)
T PF10377_consen 41 RNFQVGDLVLFLPTRNHN 58 (129)
T ss_pred ecCCCCCEEEEEecCCCC
Confidence 389999999999998655
No 37
>MTH00140 COX2 cytochrome c oxidase subunit II; Provisional
Probab=70.43 E-value=4.7 Score=31.20 Aligned_cols=31 Identities=19% Similarity=0.385 Sum_probs=25.5
Q ss_pred EEEecCCccEEEEeCCCCCCccC---CeEEEEecCC
Q 042021 92 VIVLATPGRKWYICGVRNHCNYG---QKLVITVLPQ 124 (125)
Q Consensus 92 ~v~l~~~G~~YFic~~~~HC~~G---mkl~I~V~~~ 124 (125)
.++.++||.||..|+. -|..| |++.|.|.++
T Consensus 183 ~~~~~~~g~y~~~C~e--~CG~~H~~M~~~v~v~~~ 216 (228)
T MTH00140 183 SFEPKRPGVFYGQCSE--ICGANHSFMPIVVEAVPL 216 (228)
T ss_pred EEEeCCCEEEEEECcc--ccCcCcCCCeEEEEEECH
Confidence 4567899999999997 68776 9999988764
No 38
>PF09451 ATG27: Autophagy-related protein 27; InterPro: IPR018939 Autophagy is a degradative transport pathway that delivers cytosolic proteins to the lysosome (vacuole) [] and is induced by starvation []. Cytosolic proteins appear inside the vacuole enclosed in autophagic vesicles. Autophagy significantly differs from other transport pathways by using double membrane layered transport intermediates, called autophagosomes [, ]. The breakdown of vesicular transport intermediates is a unique feature of autophagy []. Autophagy can also function in the elimination of invading bacteria and antigens []. There are more than 25 AuTophaGy-related (ATG) genes that are essential for autophagy, although it is still not known how the autophagosome is made. Atg9 is a potential membrane carrier to deliver lipids that are used to form the vesicle. Atg27 is another transmembrane protein, and is a cycling protein []. It acts as an effector of VPS34 phosphatidylinositol 3-phosphate kinase signalling and regulates the cytoplasm to vacuole transport (Cvt) vesicle formation. It is also required for autophagy-dependent cycling of ATG9.
Probab=69.62 E-value=4.7 Score=31.87 Aligned_cols=31 Identities=13% Similarity=0.073 Sum_probs=24.9
Q ss_pred HHhccccceeEEEecCCCCCccCCCchhhcC
Q 042021 15 AFASTATSATKFIVGDDSGWTVGFDYQAWAK 45 (125)
Q Consensus 15 ~~~l~~~~a~~~~VG~~~gW~~~~~Y~~Wa~ 45 (125)
++.+...+...|..++..||.+-|+++-|.+
T Consensus 215 ~~Y~i~g~~~n~~~~g~~g~e~iP~~dfw~~ 245 (268)
T PF09451_consen 215 AAYLIFGSWYNYNRYGARGFELIPHFDFWRS 245 (268)
T ss_pred HHHhhhhhheeeccCCCCCceecccHhHHHh
Confidence 4445555778999999999999999888875
No 39
>PF09792 But2: Ubiquitin 3 binding protein But2 C-terminal domain; InterPro: IPR018620 This entry represents a presumed C-terminal domain of ubiquitin 3 binding proteins (But2). But2 is conserved in yeasts. It binds to Uba3 and is involved in the NEDD8 signalling pathway [].
Probab=65.68 E-value=24 Score=25.47 Aligned_cols=29 Identities=17% Similarity=0.324 Sum_probs=23.1
Q ss_pred EEEecCCccEEEEeCCCCCCccCCeEEEEecC
Q 042021 92 VIVLATPGRKWYICGVRNHCNYGQKLVITVLP 123 (125)
Q Consensus 92 ~v~l~~~G~~YFic~~~~HC~~Gmkl~I~V~~ 123 (125)
.+++.. |..|-|.+ ..|..||++...+.+
T Consensus 100 ~~~~~p-G~~y~i~~--f~Cp~g~~v~ye~~~ 128 (143)
T PF09792_consen 100 TFTVSP-GNSYVINT--FPCPAGQAVSYEMSS 128 (143)
T ss_pred ceEECC-CCceEeCc--EeCCCCCEEEEEEEe
Confidence 466764 99999996 479999988887764
No 40
>PTZ00047 cytochrome c oxidase subunit II; Provisional
Probab=63.77 E-value=7.8 Score=28.93 Aligned_cols=31 Identities=13% Similarity=0.235 Sum_probs=23.8
Q ss_pred EEEecCCccEEEEeCCCCCCccC---CeEEEEecCC
Q 042021 92 VIVLATPGRKWYICGVRNHCNYG---QKLVITVLPQ 124 (125)
Q Consensus 92 ~v~l~~~G~~YFic~~~~HC~~G---mkl~I~V~~~ 124 (125)
.++.+++|.+|..|+. -|..| |.+.|.|.++
T Consensus 116 ~~~~~~~G~y~gqCsE--lCG~gHs~M~~~V~vvs~ 149 (162)
T PTZ00047 116 NTFILREGVFYGQCSE--MCGTLHGFMPIVVEAVSP 149 (162)
T ss_pred EEecCCCeEEEEEcch--hcCcCccCceEEEEEeCH
Confidence 3566899999999987 56544 8888887653
No 41
>PF12961 DUF3850: Domain of Unknown Function with PDB structure (DUF3850)
Probab=63.26 E-value=4.4 Score=26.33 Aligned_cols=13 Identities=46% Similarity=0.810 Sum_probs=11.3
Q ss_pred CCeEEeCCEEEEE
Q 042021 46 GKVFHVGDKLVFQ 58 (125)
Q Consensus 46 ~~~f~vGD~L~F~ 58 (125)
++.|+|||.|.++
T Consensus 26 DRdf~VGD~L~L~ 38 (72)
T PF12961_consen 26 DRDFQVGDILVLR 38 (72)
T ss_pred CCCCCCCCEEEEE
Confidence 6789999999974
No 42
>PF02157 Man-6-P_recep: Mannose-6-phosphate receptor; PDB: 2RLB_A 3K42_A 2RL9_A 3K43_A 1C39_A 1M6P_A 3CY4_A 1KEO_B 2RL7_D 2RL8_B ....
Probab=62.44 E-value=2.5 Score=34.12 Aligned_cols=37 Identities=22% Similarity=0.254 Sum_probs=0.0
Q ss_pred eEEEecCCCCCccCCCchhhcCCCeEEeCCEEEEEecC
Q 042021 24 TKFIVGDDSGWTVGFDYQAWAKGKVFHVGDKLVFQYPV 61 (125)
Q Consensus 24 ~~~~VG~~~gW~~~~~Y~~Wa~~~~f~vGD~L~F~~~~ 61 (125)
...+|-+..||..-|||.-|+.--.|. -|-..|....
T Consensus 211 YqR~v~garG~eqiPN~~fW~~l~~l~-~Dg~~f~crs 247 (278)
T PF02157_consen 211 YQRFVMGARGWEQIPNYSFWAGLPSLV-ADGCDFVCRS 247 (278)
T ss_dssp --------------------------------------
T ss_pred HHHHHhcCchhhhCcCHHHHHhhHHHH-HHHHhheecc
Confidence 444455578999999999999776766 5888877554
No 43
>MTH00168 COX2 cytochrome c oxidase subunit II; Provisional
Probab=61.91 E-value=8.5 Score=29.78 Aligned_cols=31 Identities=19% Similarity=0.462 Sum_probs=25.0
Q ss_pred EEEecCCccEEEEeCCCCCCccC---CeEEEEecCC
Q 042021 92 VIVLATPGRKWYICGVRNHCNYG---QKLVITVLPQ 124 (125)
Q Consensus 92 ~v~l~~~G~~YFic~~~~HC~~G---mkl~I~V~~~ 124 (125)
.++.+++|.+|..|+. -|..| |.+.|.|.++
T Consensus 183 ~~~~~~~G~~~g~CsE--~CG~~Hs~M~~~v~vv~~ 216 (225)
T MTH00168 183 AFLSSRPGSFYGQCSE--ICGANHSFMPIVVEFVPW 216 (225)
T ss_pred EEEcCCCEEEEEEccc--ccCcCcCCCeEEEEEeCH
Confidence 4667899999999987 57766 8998887764
No 44
>MTH00154 COX2 cytochrome c oxidase subunit II; Provisional
Probab=61.79 E-value=9.3 Score=29.67 Aligned_cols=31 Identities=19% Similarity=0.382 Sum_probs=24.8
Q ss_pred EEEecCCccEEEEeCCCCCCccC---CeEEEEecCC
Q 042021 92 VIVLATPGRKWYICGVRNHCNYG---QKLVITVLPQ 124 (125)
Q Consensus 92 ~v~l~~~G~~YFic~~~~HC~~G---mkl~I~V~~~ 124 (125)
.++.++||.||..|+. -|..| |++.|.|.++
T Consensus 183 ~~~~~~~G~y~g~Cse--~CG~~H~~M~~~v~vv~~ 216 (227)
T MTH00154 183 NFLINRPGLFFGQCSE--ICGANHSFMPIVIESVSV 216 (227)
T ss_pred EEEEcCceEEEEEeec--hhCcCccCCeEEEEEeCH
Confidence 4677899999999987 57665 8888887653
No 45
>MTH00139 COX2 cytochrome c oxidase subunit II; Provisional
Probab=60.97 E-value=8.4 Score=29.75 Aligned_cols=31 Identities=16% Similarity=0.386 Sum_probs=25.1
Q ss_pred EEEecCCccEEEEeCCCCCCccC---CeEEEEecCC
Q 042021 92 VIVLATPGRKWYICGVRNHCNYG---QKLVITVLPQ 124 (125)
Q Consensus 92 ~v~l~~~G~~YFic~~~~HC~~G---mkl~I~V~~~ 124 (125)
.++.++||.||..|+. -|..| |.+.|.|.++
T Consensus 183 ~~~~~~~G~y~g~CsE--~CG~~Hs~M~~~v~vv~~ 216 (226)
T MTH00139 183 GFFINRPGVFYGQCSE--ICGANHSFMPIVVEAISP 216 (226)
T ss_pred EEEcCCCEEEEEEChh--hcCcCcCCCeEEEEEeCH
Confidence 4677899999999987 57766 8998887654
No 46
>TIGR01165 cbiN cobalt transport protein. This model describes the cobalt transporter in bacteria and its equivalents in archaea. It principally functions in the ion uptake mechanism. It is a multisubunit transporter with two integral membrane proteins and two closely associated cytoplasmic subunits. This transporter belongs to the ABC transporter superfamily (ATP stands for ATP Binding Cassette). This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=60.96 E-value=5.5 Score=27.04 Aligned_cols=11 Identities=36% Similarity=0.770 Sum_probs=8.5
Q ss_pred CCCchhhcCCC
Q 042021 37 GFDYQAWAKGK 47 (125)
Q Consensus 37 ~~~Y~~Wa~~~ 47 (125)
.|+|+.|.+..
T Consensus 48 ~p~Y~PWf~Pl 58 (91)
T TIGR01165 48 GPDYKPWFSPL 58 (91)
T ss_pred CCCCccccccc
Confidence 57899998763
No 47
>TIGR01432 QOXA cytochrome aa3 quinol oxidase, subunit II. This enzyme catalyzes the oxidation of quinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. This subunit contains two transmembrane helices and a large external domain responsible for the binding and oxidation of quinol. QuoX is (presently) only found in gram positive bacteria of the Bacillus/Staphylococcus group. Like CyoA, the ubiquinol oxidase found in proteobacteria, the residues responsible for the ligation of Cu(a) and cytochrome c (found in the related cyt. c oxidases) are absent. Unlike CyoA, QoxA is in complex with a subunit I which contains cytochromes a similar to the cyt. c oxidases (as opposed to cytochromes b).
Probab=60.73 E-value=8.4 Score=29.51 Aligned_cols=31 Identities=10% Similarity=0.020 Sum_probs=25.9
Q ss_pred EEEecCCccEEEEeCCCCCCccC---CeEEEEecCC
Q 042021 92 VIVLATPGRKWYICGVRNHCNYG---QKLVITVLPQ 124 (125)
Q Consensus 92 ~v~l~~~G~~YFic~~~~HC~~G---mkl~I~V~~~ 124 (125)
.++.++||.||-.|+. -|..| |++.|.|.++
T Consensus 173 ~~~~~~~G~y~g~Cae--~CG~~Hs~M~~~v~v~~~ 206 (217)
T TIGR01432 173 YLQADQVGTYRGRNAN--FNGEGFADQTFDVNAVSE 206 (217)
T ss_pred EEEeCCCEEEEEEehh--hcCccccCCeEEEEEeCH
Confidence 5778899999999997 68766 9999998764
No 48
>MTH00117 COX2 cytochrome c oxidase subunit II; Provisional
Probab=60.46 E-value=11 Score=29.31 Aligned_cols=31 Identities=19% Similarity=0.448 Sum_probs=24.9
Q ss_pred EEEecCCccEEEEeCCCCCCccC---CeEEEEecCC
Q 042021 92 VIVLATPGRKWYICGVRNHCNYG---QKLVITVLPQ 124 (125)
Q Consensus 92 ~v~l~~~G~~YFic~~~~HC~~G---mkl~I~V~~~ 124 (125)
.++.++||.||-.|+. -|..| |.+.|.|.++
T Consensus 183 ~~~~~~~G~y~g~CsE--~CG~~Hs~M~~~v~vv~~ 216 (227)
T MTH00117 183 SFITTRPGVFYGQCSE--ICGANHSFMPIVVESVPL 216 (227)
T ss_pred EEEEcccceEEEEecc--ccccCccCCeEEEEEcCH
Confidence 4677899999999997 57665 9998887654
No 49
>PRK13838 conjugal transfer pilin processing protease TraF; Provisional
Probab=60.38 E-value=2.9 Score=31.28 Aligned_cols=15 Identities=27% Similarity=0.399 Sum_probs=12.6
Q ss_pred CCeEEeCCEEEEEec
Q 042021 46 GKVFHVGDKLVFQYP 60 (125)
Q Consensus 46 ~~~f~vGD~L~F~~~ 60 (125)
..+.+.||.++|.-+
T Consensus 48 ~~~~~rGDiVvf~~P 62 (176)
T PRK13838 48 DRPVAVGDLVFICPP 62 (176)
T ss_pred CCCCCCCcEEEEECC
Confidence 457899999999865
No 50
>TIGR01433 CyoA cytochrome o ubiquinol oxidase subunit II. This enzyme catalyzes the oxidation of ubiquinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. Subunit II is responsible for binding and oxidation of the ubiquinone substrate. This sequence is closely related to QoxA, which oxidizes quinol in gram positive bacteria but which is in complex with subunits which utilize cytochromes a in the reduction of molecular oxygen. Slightly more distantly related is subunit II of cytochrome c oxidase which uses cyt. c as the oxidant.
Probab=60.25 E-value=8.5 Score=29.88 Aligned_cols=31 Identities=16% Similarity=0.089 Sum_probs=25.4
Q ss_pred EEEecCCccEEEEeCCCCCCccC---CeEEEEecCC
Q 042021 92 VIVLATPGRKWYICGVRNHCNYG---QKLVITVLPQ 124 (125)
Q Consensus 92 ~v~l~~~G~~YFic~~~~HC~~G---mkl~I~V~~~ 124 (125)
.++.++||.|+-.|+. .|..| |.+.|.|.++
T Consensus 182 ~~~~~~~G~y~g~CaE--~CG~~Ha~M~~~V~v~~~ 215 (226)
T TIGR01433 182 HLIANEPGVYDGISAN--YSGPGFSGMKFKAIATDR 215 (226)
T ss_pred EEEeCCCEEEEEEchh--hcCcCccCCeEEEEEECH
Confidence 5678899999999987 67665 9999988654
No 51
>PLN00115 pollen allergen group 3; Provisional
Probab=58.08 E-value=17 Score=25.66 Aligned_cols=32 Identities=28% Similarity=0.403 Sum_probs=19.7
Q ss_pred CCchhHHHHHHHHHHHhcccc--ceeEEEecCCC
Q 042021 1 MAFGRVFVLLLAIAAFASTAT--SATKFIVGDDS 32 (125)
Q Consensus 1 Ma~~~~~~~~~~~~~~~l~~~--~a~~~~VG~~~ 32 (125)
|+++..|++..++++++..+. ...+++|++..
T Consensus 1 ~~~~~~~~~~~~~a~l~~~~~~g~~v~F~V~~gS 34 (118)
T PLN00115 1 MSSLSFLLLAVALAALFAVGSCATEVTFKVGKGS 34 (118)
T ss_pred CchhHHHHHHHHHHHHhhhhhcCCceEEEECCCC
Confidence 777666555444555544433 56788899754
No 52
>MTH00129 COX2 cytochrome c oxidase subunit II; Provisional
Probab=57.77 E-value=10 Score=29.54 Aligned_cols=31 Identities=19% Similarity=0.478 Sum_probs=24.2
Q ss_pred EEEecCCccEEEEeCCCCCCccC---CeEEEEecCC
Q 042021 92 VIVLATPGRKWYICGVRNHCNYG---QKLVITVLPQ 124 (125)
Q Consensus 92 ~v~l~~~G~~YFic~~~~HC~~G---mkl~I~V~~~ 124 (125)
.+..++||.||..|+. -|..| |++.|.|.++
T Consensus 183 ~~~~~~~G~~~g~C~e--~CG~~H~~M~~~v~vv~~ 216 (230)
T MTH00129 183 AFIASRPGVFYGQCSE--ICGANHSFMPIVVEAVPL 216 (230)
T ss_pred EEEeCCceEEEEEChh--hccccccCCcEEEEEECH
Confidence 4567899999999987 56654 8888887653
No 53
>PF08980 DUF1883: Domain of unknown function (DUF1883); InterPro: IPR015073 This family consist of hypothetical bacterial proteins. ; PDB: 2B1Y_A.
Probab=57.64 E-value=2.1 Score=29.25 Aligned_cols=76 Identities=18% Similarity=0.224 Sum_probs=17.0
Q ss_pred CCeEEeCCEEEEEecCCceeEEEECcccCcc-CCCCCCc---cccccCceEEEecCCccEEEEeCCCCCCccC-CeEEEE
Q 042021 46 GKVFHVGDKLVFQYPVGAHNVFKVNGTAFQN-CQKPPLR---EALTTGNDVIVLATPGRKWYICGVRNHCNYG-QKLVIT 120 (125)
Q Consensus 46 ~~~f~vGD~L~F~~~~~~hsV~~v~~~~y~~-C~~~~~~---~~~~~G~~~v~l~~~G~~YFic~~~~HC~~G-mkl~I~ 120 (125)
.....-||+|+.+-+. .-+|.++++..|.+ ++...-. ..+..-+..+++..+|..|.+=.. |+..| -+-.|.
T Consensus 8 ~~~~~~Gd~V~V~ls~-~~nV~LMd~~Nf~~y~~g~~~~y~GG~~~~~Pa~i~VP~sG~W~vvID~--~g~~~~~~~si~ 84 (94)
T PF08980_consen 8 LGHLKRGDTVVVRLSH-QANVRLMDDSNFQRYKNGRRFKYIGGVAKRSPARITVPYSGHWNVVIDS--HGQSGEVEHSIS 84 (94)
T ss_dssp -----TT-------SS-S-------HHHHHHHHHHTT---S-----SSS------SSS----------TTSSS-------
T ss_pred hhccCCCCEEEEEeCC-cccEEEcChhHhhhhccCCcceEEeeecccCceEEECCCCceEEEEEEC--CCCcEEEEEEEE
Confidence 3467889999999985 67899998887765 5433221 123344456777778887776554 55555 345555
Q ss_pred ecCC
Q 042021 121 VLPQ 124 (125)
Q Consensus 121 V~~~ 124 (125)
|.|+
T Consensus 85 v~p~ 88 (94)
T PF08980_consen 85 VIPP 88 (94)
T ss_dssp ----
T ss_pred ecCC
Confidence 5443
No 54
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=57.43 E-value=24 Score=31.19 Aligned_cols=61 Identities=15% Similarity=0.174 Sum_probs=44.7
Q ss_pred CCCeEEeCCEEEEEecCCceeEEEECcccCccCCCC---C-Cc-cccccCce-EEEecCCccEEEEe
Q 042021 45 KGKVFHVGDKLVFQYPVGAHNVFKVNGTAFQNCQKP---P-LR-EALTTGND-VIVLATPGRKWYIC 105 (125)
Q Consensus 45 ~~~~f~vGD~L~F~~~~~~hsV~~v~~~~y~~C~~~---~-~~-~~~~~G~~-~v~l~~~G~~YFic 105 (125)
+.++|..-|.++|+|+...-.++.+...+.|.-+.+ . .. .....|++ .|.|.+.||.|=++
T Consensus 211 a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~ 277 (566)
T KOG2315|consen 211 ANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVT 277 (566)
T ss_pred hhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEE
Confidence 568999999999999987778887777777776654 1 11 11234666 78999999987665
No 55
>MTH00023 COX2 cytochrome c oxidase subunit II; Validated
Probab=55.43 E-value=12 Score=29.23 Aligned_cols=31 Identities=19% Similarity=0.369 Sum_probs=25.1
Q ss_pred EEEecCCccEEEEeCCCCCCccC---CeEEEEecCC
Q 042021 92 VIVLATPGRKWYICGVRNHCNYG---QKLVITVLPQ 124 (125)
Q Consensus 92 ~v~l~~~G~~YFic~~~~HC~~G---mkl~I~V~~~ 124 (125)
.++.++||.+|..|+. -|..| |.+.|.|.++
T Consensus 194 ~~~~~~~G~y~g~C~e--~CG~~Hs~M~~~v~vv~~ 227 (240)
T MTH00023 194 GFFIKRPGVFYGQCSE--ICGANHSFMPIVIEAVSL 227 (240)
T ss_pred EEEcCCCEEEEEEchh--hcCcCccCCeEEEEEECH
Confidence 4667899999999987 67766 8988887764
No 56
>MTH00038 COX2 cytochrome c oxidase subunit II; Provisional
Probab=55.00 E-value=14 Score=28.75 Aligned_cols=31 Identities=19% Similarity=0.393 Sum_probs=24.8
Q ss_pred EEEecCCccEEEEeCCCCCCccC---CeEEEEecCC
Q 042021 92 VIVLATPGRKWYICGVRNHCNYG---QKLVITVLPQ 124 (125)
Q Consensus 92 ~v~l~~~G~~YFic~~~~HC~~G---mkl~I~V~~~ 124 (125)
.++.+++|.+|..|+. -|..| |.+.|.|.++
T Consensus 183 ~~~~~~~G~~~g~Cse--~CG~~Hs~M~~~v~vv~~ 216 (229)
T MTH00038 183 TFFISRTGLFYGQCSE--ICGANHSFMPIVIESVPF 216 (229)
T ss_pred EEEcCCCEEEEEEccc--ccCcCcCCCeEEEEEeCH
Confidence 4667899999999987 57666 9999887653
No 57
>PF02362 B3: B3 DNA binding domain; InterPro: IPR003340 Two DNA binding proteins, RAV1 and RAV2 from Arabidopsis thaliana contain two distinct amino acid sequence domains found only in higher plant species. The N-terminal regions of RAV1 and RAV2 are homologous to the AP2 DNA-binding domain (see IPR001471 from INTERPRO) present in a family of transcription factors, while the C-terminal region exhibits homology to the highly conserved C-terminal domain, designated B3, of VP1/ABI3 transcription factors []. The AP2 and B3-like domains of RAV1 bind autonomously to the CAACA and CACCTG motifs, respectively, and together achieve a high affinity and specificity of binding. It has been suggested that the AP2 and B3-like domains of RAV1 are connected by a highly flexible structure enabling the two domains to bind to the CAACA and CACCTG motifs in various spacings and orientations [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1WID_A 1YEL_A.
Probab=54.00 E-value=6.6 Score=25.48 Aligned_cols=20 Identities=20% Similarity=0.312 Sum_probs=12.5
Q ss_pred hhcCCCeEEeCCEEEEEecC
Q 042021 42 AWAKGKVFHVGDKLVFQYPV 61 (125)
Q Consensus 42 ~Wa~~~~f~vGD~L~F~~~~ 61 (125)
+-+..+.+++||.++|.+..
T Consensus 67 ~Fv~~n~L~~GD~~~F~~~~ 86 (100)
T PF02362_consen 67 KFVRDNGLKEGDVCVFELIG 86 (100)
T ss_dssp HHHHHCT--TT-EEEEEE-S
T ss_pred HHHHHcCCCCCCEEEEEEec
Confidence 34556789999999999985
No 58
>PLN02835 oxidoreductase
Probab=53.92 E-value=62 Score=28.29 Aligned_cols=77 Identities=9% Similarity=-0.093 Sum_probs=45.3
Q ss_pred CCeEEeCCEEEEEecCC--------ceeEEEECcccCcc-CCCCCCccccccCceEEEe-cCCccEEEEeCCCCCCccCC
Q 042021 46 GKVFHVGDKLVFQYPVG--------AHNVFKVNGTAFQN-CQKPPLREALTTGNDVIVL-ATPGRKWYICGVRNHCNYGQ 115 (125)
Q Consensus 46 ~~~f~vGD~L~F~~~~~--------~hsV~~v~~~~y~~-C~~~~~~~~~~~G~~~v~l-~~~G~~YFic~~~~HC~~Gm 115 (125)
..++..||+|+.+.... -|.+.+-.....|. -...-|+.+..+=...|++ +.+|++||=|-...+-..|+
T Consensus 61 ~I~~~~GD~v~v~v~N~L~~~ttiHWHGl~~~~~~~~DGv~~tQ~pI~PG~sf~Y~F~~~~q~GT~WYHsH~~~q~~~Gl 140 (539)
T PLN02835 61 RLDVVTNDNIILNLINKLDQPFLLTWNGIKQRKNSWQDGVLGTNCPIPPNSNYTYKFQTKDQIGTFTYFPSTLFHKAAGG 140 (539)
T ss_pred CEEEECCCEEEEEEEeCCCCCCcEEeCCcccCCCCCCCCCccCcCCCCCCCcEEEEEEECCCCEeEEEEeCccchhcCcc
Confidence 35899999999887643 24444432211121 0001122221111226766 47999999998888888898
Q ss_pred eEEEEec
Q 042021 116 KLVITVL 122 (125)
Q Consensus 116 kl~I~V~ 122 (125)
.-.+.|.
T Consensus 141 ~G~lIV~ 147 (539)
T PLN02835 141 FGAINVY 147 (539)
T ss_pred cceeEEe
Confidence 8777774
No 59
>MTH00098 COX2 cytochrome c oxidase subunit II; Validated
Probab=53.52 E-value=14 Score=28.72 Aligned_cols=31 Identities=19% Similarity=0.494 Sum_probs=24.3
Q ss_pred EEEecCCccEEEEeCCCCCCccC---CeEEEEecCC
Q 042021 92 VIVLATPGRKWYICGVRNHCNYG---QKLVITVLPQ 124 (125)
Q Consensus 92 ~v~l~~~G~~YFic~~~~HC~~G---mkl~I~V~~~ 124 (125)
.++.++||.+|..|+. -|..| |.+.|.|.++
T Consensus 183 ~~~~~~~G~~~g~Cse--~CG~~H~~M~~~v~v~~~ 216 (227)
T MTH00098 183 TLMSTRPGLYYGQCSE--ICGSNHSFMPIVLELVPL 216 (227)
T ss_pred EEecCCcEEEEEECcc--ccCcCcCCceEEEEEeCH
Confidence 4567899999999987 57665 8888887653
No 60
>PF06291 Lambda_Bor: Bor protein; InterPro: IPR010438 This family consists of several Bacteriophage lambda Bor and Escherichia coli Iss proteins. Expression of bor significantly increases the survival of the E. coli host cell in animal serum. This property is a well known bacterial virulence determinant indeed, bor and its adjacent sequences are highly homologous to the iss serum resistance locus of the plasmid ColV2-K94, which confers virulence in animals. It has been suggested that lysogeny may generally have a role in bacterial survival in animal hosts, and perhaps in pathogenesis [].
Probab=51.98 E-value=22 Score=24.26 Aligned_cols=19 Identities=26% Similarity=0.403 Sum_probs=14.2
Q ss_pred HHHHhccccceeEEEecCC
Q 042021 13 IAAFASTATSATKFIVGDD 31 (125)
Q Consensus 13 ~~~~~l~~~~a~~~~VG~~ 31 (125)
+++++|.+++..++.||+.
T Consensus 9 ~lallLtgCatqt~~~~~~ 27 (97)
T PF06291_consen 9 ALALLLTGCATQTFTVGNQ 27 (97)
T ss_pred HHHHHHcccceeEEEeCCC
Confidence 3355788888899999963
No 61
>PLN02191 L-ascorbate oxidase
Probab=50.97 E-value=50 Score=29.05 Aligned_cols=75 Identities=15% Similarity=0.143 Sum_probs=45.5
Q ss_pred CCeEEeCCEEEEEecCCc---------eeEEEECcccCccCCCCCCc-cccccCce---EEEecCCccEEEEeCCCCCCc
Q 042021 46 GKVFHVGDKLVFQYPVGA---------HNVFKVNGTAFQNCQKPPLR-EALTTGND---VIVLATPGRKWYICGVRNHCN 112 (125)
Q Consensus 46 ~~~f~vGD~L~F~~~~~~---------hsV~~v~~~~y~~C~~~~~~-~~~~~G~~---~v~l~~~G~~YFic~~~~HC~ 112 (125)
..++..||+|+.+..... |.+.+-.....|.= +... ..-..|.+ .|+++.+|++||=|-.+.+-.
T Consensus 55 ~i~~~~Gd~v~v~v~N~l~~~~tsiHwHGl~~~~~~~~DGv--~gvtq~pI~PG~s~~Y~f~~~~~GT~wYHsH~~~q~~ 132 (574)
T PLN02191 55 TIDAVAGDTIVVHLTNKLTTEGLVIHWHGIRQKGSPWADGA--AGVTQCAINPGETFTYKFTVEKPGTHFYHGHYGMQRS 132 (574)
T ss_pred eEEEEcCCEEEEEEEECCCCCCccEECCCCCCCCCccccCC--CccccCCcCCCCeEEEEEECCCCeEEEEeeCcHHHHh
Confidence 348899999998876431 22322111001110 0000 11123332 678889999999999988889
Q ss_pred cCCeEEEEec
Q 042021 113 YGQKLVITVL 122 (125)
Q Consensus 113 ~Gmkl~I~V~ 122 (125)
.||.-.|.|.
T Consensus 133 ~Gl~G~liV~ 142 (574)
T PLN02191 133 AGLYGSLIVD 142 (574)
T ss_pred CCCEEEEEEc
Confidence 9998888875
No 62
>MTH00008 COX2 cytochrome c oxidase subunit II; Validated
Probab=50.60 E-value=16 Score=28.35 Aligned_cols=31 Identities=16% Similarity=0.371 Sum_probs=24.5
Q ss_pred EEEecCCccEEEEeCCCCCCccC---CeEEEEecCC
Q 042021 92 VIVLATPGRKWYICGVRNHCNYG---QKLVITVLPQ 124 (125)
Q Consensus 92 ~v~l~~~G~~YFic~~~~HC~~G---mkl~I~V~~~ 124 (125)
.++.++||.+|..|+. -|..| |.+.|.|.++
T Consensus 183 ~~~~~~~G~~~g~Cse--~CG~~Hs~M~~~v~vv~~ 216 (228)
T MTH00008 183 GFTITRPGVFYGQCSE--ICGANHSFMPIVLEAVDT 216 (228)
T ss_pred EEEeCCCEEEEEEChh--hcCcCccCceeEEEEECH
Confidence 4667899999999987 57655 8888887653
No 63
>PRK11528 hypothetical protein; Provisional
Probab=49.95 E-value=21 Score=28.27 Aligned_cols=35 Identities=14% Similarity=0.300 Sum_probs=22.0
Q ss_pred CCCc-cCCCchhhcCCCeEEeCC--------EEEEEecCCceeEE
Q 042021 32 SGWT-VGFDYQAWAKGKVFHVGD--------KLVFQYPVGAHNVF 67 (125)
Q Consensus 32 ~gW~-~~~~Y~~Wa~~~~f~vGD--------~L~F~~~~~~hsV~ 67 (125)
.+|. ...+|-.|.+....+.++ .|+|++.. .++.-
T Consensus 26 ~~w~dis~~yl~W~~~~e~~~~~~~~~~d~~ylelE~g~-~~~wG 69 (254)
T PRK11528 26 GGFANISLNYLDWTSRTTEKSSDKSHKDDFGYLELEGGA-GFSWG 69 (254)
T ss_pred ccccceeehhhhhhccccccccccCCcCCCcEEEEEccc-cCCeE
Confidence 3576 456888898886654432 67777765 35443
No 64
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=49.27 E-value=59 Score=28.82 Aligned_cols=86 Identities=19% Similarity=0.231 Sum_probs=51.4
Q ss_pred CccCC-CchhhcCCCeEEeCCEEEEEecCC---ceeE------EEECcccCccCCCCCCccccccCce---EEEecCCcc
Q 042021 34 WTVGF-DYQAWAKGKVFHVGDKLVFQYPVG---AHNV------FKVNGTAFQNCQKPPLREALTTGND---VIVLATPGR 100 (125)
Q Consensus 34 W~~~~-~Y~~Wa~~~~f~vGD~L~F~~~~~---~hsV------~~v~~~~y~~C~~~~~~~~~~~G~~---~v~l~~~G~ 100 (125)
|+++- .|.. +...+++.||.+.+.+.+. .|.+ .++...+-. =.+..-+.....|.+ .|..+.||.
T Consensus 488 wtiNG~~~~~-~~pl~v~~Gervri~l~N~t~~~HpmHlHG~~f~v~~~~G~-~~~~~dTv~V~Pg~t~~~~f~ad~pG~ 565 (587)
T TIGR01480 488 WSFDGEAFGL-KTPLRFNYGERLRVVLVNDTMMAHPIHLHGMWSELEDGQGE-FQVRKHTVDVPPGGKRSFRVTADALGR 565 (587)
T ss_pred EEECCccCCC-CCceEecCCCEEEEEEECCCCCCcceeEcCceeeeecCCCc-ccccCCceeeCCCCEEEEEEECCCCeE
Confidence 87753 2332 2356899999999999753 3443 233211100 000000111223332 467789999
Q ss_pred EEEEeCCCCCCccCCeEEEEe
Q 042021 101 KWYICGVRNHCNYGQKLVITV 121 (125)
Q Consensus 101 ~YFic~~~~HC~~Gmkl~I~V 121 (125)
++|=|-...|=+.||--.+.|
T Consensus 566 w~~HCH~l~H~~~GM~~~~~v 586 (587)
T TIGR01480 566 WAYHCHMLLHMEAGMFREVTV 586 (587)
T ss_pred EEEcCCCHHHHhCcCcEEEEe
Confidence 999999999999999877776
No 65
>MTH00051 COX2 cytochrome c oxidase subunit II; Provisional
Probab=49.17 E-value=16 Score=28.50 Aligned_cols=31 Identities=19% Similarity=0.357 Sum_probs=24.8
Q ss_pred EEEecCCccEEEEeCCCCCCccC---CeEEEEecCC
Q 042021 92 VIVLATPGRKWYICGVRNHCNYG---QKLVITVLPQ 124 (125)
Q Consensus 92 ~v~l~~~G~~YFic~~~~HC~~G---mkl~I~V~~~ 124 (125)
.++.++||.+|..|+. -|..| |.+.|.|.++
T Consensus 187 ~~~~~~~G~y~g~Cse--~CG~~Hs~M~i~v~vv~~ 220 (234)
T MTH00051 187 SFFIKRPGVFYGQCSE--ICGANHSFMPIVIEGVSL 220 (234)
T ss_pred EEEeCCCEEEEEEChh--hcCcccccCeeEEEEECH
Confidence 4677899999999987 57665 8888887653
No 66
>PF06462 Hyd_WA: Propeller; InterPro: IPR006624 Tectonins I and II are two dominant proteins in the nuclei and nuclear matrix from plasmodia of Physarum polycephalum (Slime mold) which encode 217 and 353 amino acids, respectively. Tectonin I is homologous to the C-terminal two-thirds of tectonin II. Both proteins contain six tandem repeats that are each 33-37 amino acids in length and define a new consensus sequence. Homologous repeats are found in L-6, a bacterial lipopolysaccharide-binding lectin from horseshoe crab hemocytes. The repetitive sequences of the tectonins and L-6 are reminiscent of the WD repeats of the beta-subunit of G proteins, suggesting that they form beta-propeller domains. The tectonins may be lectins that function as part of a transmembrane signalling complex during phagocytosis [].
Probab=49.11 E-value=40 Score=18.06 Aligned_cols=25 Identities=16% Similarity=0.343 Sum_probs=20.9
Q ss_pred EEEecCCccEEEEeCCCCCCccCCe
Q 042021 92 VIVLATPGRKWYICGVRNHCNYGQK 116 (125)
Q Consensus 92 ~v~l~~~G~~YFic~~~~HC~~Gmk 116 (125)
..-++..|..||=.++...|..|+.
T Consensus 3 VWav~~~G~v~~R~Gis~~~P~G~~ 27 (32)
T PF06462_consen 3 VWAVTSDGSVYFRTGISPSNPEGTS 27 (32)
T ss_pred EEEEcCCCCEEEECcCCCCCCCCCC
Confidence 4567778999999999999999974
No 67
>PLN02168 copper ion binding / pectinesterase
Probab=49.04 E-value=79 Score=27.75 Aligned_cols=78 Identities=8% Similarity=-0.150 Sum_probs=46.2
Q ss_pred CCeEEeCCEEEEEecCC--------ceeEEEECcccCcc-CCCCCCccccccCceEEEec-CCccEEEEeCCCCCCccCC
Q 042021 46 GKVFHVGDKLVFQYPVG--------AHNVFKVNGTAFQN-CQKPPLREALTTGNDVIVLA-TPGRKWYICGVRNHCNYGQ 115 (125)
Q Consensus 46 ~~~f~vGD~L~F~~~~~--------~hsV~~v~~~~y~~-C~~~~~~~~~~~G~~~v~l~-~~G~~YFic~~~~HC~~Gm 115 (125)
..++..||+|+.+.... -|.+.+-.....|. -...-|+....+=.-.|++. .+|++||=+-...+=..|+
T Consensus 58 ~I~~~~GD~v~V~v~N~L~~~ttiHWHGl~~~~~~~~DGv~gtQcpI~PG~sftY~F~~~~q~GT~WYHsH~~~Q~~~GL 137 (545)
T PLN02168 58 LLNATANDVINVNIFNNLTEPFLMTWNGLQLRKNSWQDGVRGTNCPILPGTNWTYRFQVKDQIGSYFYFPSLLLQKAAGG 137 (545)
T ss_pred cEEEECCCEEEEEEEeCCCCCccEeeCCccCCCCCCcCCCCCCcCCCCCCCcEEEEEEeCCCCceEEEecChhhhhhCcc
Confidence 35899999999988753 24454432211121 00011232221112267884 7999999987776667788
Q ss_pred eEEEEecC
Q 042021 116 KLVITVLP 123 (125)
Q Consensus 116 kl~I~V~~ 123 (125)
.-.+.|.+
T Consensus 138 ~G~lII~~ 145 (545)
T PLN02168 138 YGAIRIYN 145 (545)
T ss_pred eeEEEEcC
Confidence 87777754
No 68
>MTH00076 COX2 cytochrome c oxidase subunit II; Provisional
Probab=48.39 E-value=18 Score=28.12 Aligned_cols=31 Identities=19% Similarity=0.446 Sum_probs=24.4
Q ss_pred EEEecCCccEEEEeCCCCCCccC---CeEEEEecCC
Q 042021 92 VIVLATPGRKWYICGVRNHCNYG---QKLVITVLPQ 124 (125)
Q Consensus 92 ~v~l~~~G~~YFic~~~~HC~~G---mkl~I~V~~~ 124 (125)
.+..+++|.+|..|+. -|..| |.+.|.|.++
T Consensus 183 ~~~~~~~G~~~g~C~e--~CG~~Hs~M~~~v~vv~~ 216 (228)
T MTH00076 183 SFIASRPGVYYGQCSE--ICGANHSFMPIVVEATPL 216 (228)
T ss_pred EEEeCCcEEEEEEChh--hcCccccCCceEEEEeCH
Confidence 4667899999999987 56654 9998887653
No 69
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=48.35 E-value=61 Score=28.75 Aligned_cols=74 Identities=11% Similarity=0.069 Sum_probs=43.5
Q ss_pred CCeEEeCCEEEEEecCC---ceeEEE----ECcccCcc-CCCC-CCccccccCc---eEEEecCCccEEEEeCCCCCCcc
Q 042021 46 GKVFHVGDKLVFQYPVG---AHNVFK----VNGTAFQN-CQKP-PLREALTTGN---DVIVLATPGRKWYICGVRNHCNY 113 (125)
Q Consensus 46 ~~~f~vGD~L~F~~~~~---~hsV~~----v~~~~y~~-C~~~-~~~~~~~~G~---~~v~l~~~G~~YFic~~~~HC~~ 113 (125)
..+++.||.|+.++.+. .+++.. ++. ..|. ...+ .++ ..|. ..|++..+|+|||-|-...+=+.
T Consensus 77 ~ir~~~Gd~v~v~v~N~l~~~tsiHwHGl~~~~-~~DGvP~vt~~~I---~PG~s~~Y~f~~~~~GTyWYHsH~~~q~~~ 152 (587)
T TIGR01480 77 LLRWREGDTVRLRVTNTLPEDTSIHWHGILLPF-QMDGVPGVSFAGI---APGETFTYRFPVRQSGTYWYHSHSGFQEQA 152 (587)
T ss_pred eEEEECCCEEEEEEEcCCCCCceEEcCCCcCCc-cccCCCccccccc---CCCCeEEEEEECCCCeeEEEecCchhHhhc
Confidence 35889999999988753 222210 110 0010 0000 111 2233 26778899999999987766677
Q ss_pred CCeEEEEecC
Q 042021 114 GQKLVITVLP 123 (125)
Q Consensus 114 Gmkl~I~V~~ 123 (125)
|+.-.|.|.+
T Consensus 153 GL~G~lIV~~ 162 (587)
T TIGR01480 153 GLYGPLIIDP 162 (587)
T ss_pred cceEEEEECC
Confidence 9887777664
No 70
>smart00495 ChtBD3 Chitin-binding domain type 3.
Probab=47.96 E-value=11 Score=20.99 Aligned_cols=18 Identities=33% Similarity=0.816 Sum_probs=14.0
Q ss_pred chhhcCCCeEEeCCEEEE
Q 042021 40 YQAWAKGKVFHVGDKLVF 57 (125)
Q Consensus 40 Y~~Wa~~~~f~vGD~L~F 57 (125)
|+.|.....-..||.+.+
T Consensus 1 ~~~W~~~~~Y~~Gd~V~~ 18 (41)
T smart00495 1 APAWQAGTVYTAGDVVSY 18 (41)
T ss_pred CCccCCCCcCcCCCEEEE
Confidence 457888877778998875
No 71
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=45.88 E-value=83 Score=27.28 Aligned_cols=74 Identities=14% Similarity=0.159 Sum_probs=42.5
Q ss_pred CCeEEeCCEEEEEecCC---c-----eeEEEECcccCcc--CCCCCCccccccCce---EEEe-cCCccEEEEeCCCCCC
Q 042021 46 GKVFHVGDKLVFQYPVG---A-----HNVFKVNGTAFQN--CQKPPLREALTTGND---VIVL-ATPGRKWYICGVRNHC 111 (125)
Q Consensus 46 ~~~f~vGD~L~F~~~~~---~-----hsV~~v~~~~y~~--C~~~~~~~~~~~G~~---~v~l-~~~G~~YFic~~~~HC 111 (125)
..++..||+|+.+.... . |.+.|......|. .-.--|+ ..|.+ .|++ +.+|++||=|-... .
T Consensus 35 ~i~~~~GD~v~v~v~N~l~~~tsiHwHGl~q~~~~~~DGv~~vTq~pI---~PG~s~~Y~f~~~~~~GT~WYHsH~~~-~ 110 (539)
T TIGR03389 35 TLYAREGDTVIVNVTNNVQYNVTIHWHGVRQLRNGWADGPAYITQCPI---QPGQSYVYNFTITGQRGTLWWHAHISW-L 110 (539)
T ss_pred EEEEEcCCEEEEEEEeCCCCCeeEecCCCCCCCCCCCCCCcccccCCc---CCCCeEEEEEEecCCCeeEEEecCchh-h
Confidence 35899999999887643 2 2333221111111 0000011 23332 6777 48899999998764 4
Q ss_pred ccCCeEEEEecC
Q 042021 112 NYGQKLVITVLP 123 (125)
Q Consensus 112 ~~Gmkl~I~V~~ 123 (125)
..||...|.|.+
T Consensus 111 ~~Gl~G~lIV~~ 122 (539)
T TIGR03389 111 RATVYGAIVILP 122 (539)
T ss_pred hccceEEEEEcC
Confidence 468888887765
No 72
>MTH00027 COX2 cytochrome c oxidase subunit II; Provisional
Probab=44.88 E-value=23 Score=28.20 Aligned_cols=31 Identities=16% Similarity=0.361 Sum_probs=24.6
Q ss_pred EEEecCCccEEEEeCCCCCCccC---CeEEEEecCC
Q 042021 92 VIVLATPGRKWYICGVRNHCNYG---QKLVITVLPQ 124 (125)
Q Consensus 92 ~v~l~~~G~~YFic~~~~HC~~G---mkl~I~V~~~ 124 (125)
.++.+++|.+|-.|+. -|..| |.+.|.|.++
T Consensus 217 ~~~~~~~G~y~g~CsE--~CG~~Hs~Mpi~v~vv~~ 250 (262)
T MTH00027 217 GFLIKRPGIFYGQCSE--ICGANHSFMPIVVESVSL 250 (262)
T ss_pred EEEcCCcEEEEEEcch--hcCcCcCCCeEEEEEECH
Confidence 4667899999999987 57665 9999887653
No 73
>TIGR02228 sigpep_I_arch signal peptidase I, archaeal type. This model represents signal peptidase I from most archaea, a subunit of the eukaryotic endoplasmic reticulum signal peptidase I complex, and an apparent signal peptidase I from a small number of bacteria. It is related to but does not overlap in hits with TIGR02227, the bacterial and mitochondrial signal peptidase I.
Probab=44.59 E-value=1e+02 Score=22.50 Aligned_cols=25 Identities=28% Similarity=0.527 Sum_probs=18.9
Q ss_pred CeEEeCCEEEEEecCC----ceeEEEECc
Q 042021 47 KVFHVGDKLVFQYPVG----AHNVFKVNG 71 (125)
Q Consensus 47 ~~f~vGD~L~F~~~~~----~hsV~~v~~ 71 (125)
..++.||.++|+.+.+ -|.|..+.+
T Consensus 59 ~~~~~GDIVvf~~~~~~~~iihRVi~v~~ 87 (158)
T TIGR02228 59 NDIQVGDVITYKSPGFNTPVTHRVIEINN 87 (158)
T ss_pred CCCCCCCEEEEEECCCCccEEEEEEEEEC
Confidence 4789999999998763 466776643
No 74
>PF14801 GCD14_N: tRNA methyltransferase complex GCD14 subunit N-term; PDB: 1I9G_A.
Probab=44.45 E-value=19 Score=22.10 Aligned_cols=29 Identities=28% Similarity=0.509 Sum_probs=14.4
Q ss_pred CCeEEeCCEEEEEecCCc-eeEEEECcccC
Q 042021 46 GKVFHVGDKLVFQYPVGA-HNVFKVNGTAF 74 (125)
Q Consensus 46 ~~~f~vGD~L~F~~~~~~-hsV~~v~~~~y 74 (125)
+-.|+.||.+.+.=+++. |++.+.+...|
T Consensus 3 ~Gpf~~GdrVQlTD~Kgr~~Ti~L~~G~~f 32 (54)
T PF14801_consen 3 RGPFRAGDRVQLTDPKGRKHTITLEPGGEF 32 (54)
T ss_dssp --S--TT-EEEEEETT--EEEEE--TT-EE
T ss_pred cCCCCCCCEEEEccCCCCeeeEEECCCCeE
Confidence 347999999999999875 55665554444
No 75
>MTH00080 COX2 cytochrome c oxidase subunit II; Provisional
Probab=43.54 E-value=27 Score=27.27 Aligned_cols=31 Identities=16% Similarity=0.297 Sum_probs=24.8
Q ss_pred EEEecCCccEEEEeCCCCCCccC---CeEEEEecCC
Q 042021 92 VIVLATPGRKWYICGVRNHCNYG---QKLVITVLPQ 124 (125)
Q Consensus 92 ~v~l~~~G~~YFic~~~~HC~~G---mkl~I~V~~~ 124 (125)
.++.++||.+|-.|+. -|..| |.+.|.+.++
T Consensus 186 ~~~~~~~G~y~g~CsE--~CG~~Hs~M~~~v~vv~~ 219 (231)
T MTH00080 186 CYSFPMPGVFYGQCSE--ICGANHSFMPIAVEVTLL 219 (231)
T ss_pred EEEEcCceEEEEEehh--hcCcCccCCEEEEEEECH
Confidence 4677899999999987 57665 9999887654
No 76
>PLN02792 oxidoreductase
Probab=42.39 E-value=1e+02 Score=26.96 Aligned_cols=75 Identities=9% Similarity=-0.048 Sum_probs=42.2
Q ss_pred CeEEeCCEEEEEecCC--------ceeEEEECcccCcc-CCCCCCccccccCceEEEec-CCccEEEEeCCCCCCccCCe
Q 042021 47 KVFHVGDKLVFQYPVG--------AHNVFKVNGTAFQN-CQKPPLREALTTGNDVIVLA-TPGRKWYICGVRNHCNYGQK 116 (125)
Q Consensus 47 ~~f~vGD~L~F~~~~~--------~hsV~~v~~~~y~~-C~~~~~~~~~~~G~~~v~l~-~~G~~YFic~~~~HC~~Gmk 116 (125)
.++..||+|+.+.... -|.+.|-.....|. --..-|+....+=.-.|+++ .+|++||=+-...+-..|+.
T Consensus 49 I~~~~GD~v~V~v~N~L~~~ttiHWHGl~q~~~~~~DGv~~tqcPI~PG~sftY~F~~~~q~GT~WYHsH~~~q~~~Gl~ 128 (536)
T PLN02792 49 IRSLTNDNLVINVHNDLDEPFLLSWNGVHMRKNSYQDGVYGTTCPIPPGKNYTYDFQVKDQVGSYFYFPSLAVQKAAGGY 128 (536)
T ss_pred EEEECCCEEEEEEEeCCCCCcCEeCCCcccCCCCccCCCCCCcCccCCCCcEEEEEEeCCCccceEEecCcchhhhcccc
Confidence 4899999999888754 34444432111111 00001222211112267774 79999999988776667765
Q ss_pred EEEEe
Q 042021 117 LVITV 121 (125)
Q Consensus 117 l~I~V 121 (125)
-.+.|
T Consensus 129 G~liI 133 (536)
T PLN02792 129 GSLRI 133 (536)
T ss_pred cceEE
Confidence 55543
No 77
>MTH00185 COX2 cytochrome c oxidase subunit II; Provisional
Probab=41.78 E-value=27 Score=27.12 Aligned_cols=31 Identities=19% Similarity=0.531 Sum_probs=23.9
Q ss_pred EEEecCCccEEEEeCCCCCCccC---CeEEEEecCC
Q 042021 92 VIVLATPGRKWYICGVRNHCNYG---QKLVITVLPQ 124 (125)
Q Consensus 92 ~v~l~~~G~~YFic~~~~HC~~G---mkl~I~V~~~ 124 (125)
.++.++||.+|-.|+. -|..| |.+.|.+.++
T Consensus 183 ~~~~~~~G~~~g~Cse--~CG~~Hs~M~~~v~vv~~ 216 (230)
T MTH00185 183 TFIISRPGLYYGQCSE--ICGANHSFMPIVVEAVPL 216 (230)
T ss_pred EEEeCCcEEEEEEchh--hcCcCcCCCeEEEEEECH
Confidence 3567899999999987 57665 8888887653
No 78
>PF11008 DUF2846: Protein of unknown function (DUF2846); InterPro: IPR022548 Some members in this group of proteins with unknown function are annotated as lipoproteins. However this cannot be confirmed.
Probab=38.63 E-value=1.2e+02 Score=20.46 Aligned_cols=27 Identities=15% Similarity=0.004 Sum_probs=17.4
Q ss_pred CCCeEEeCCEEEEEecCCceeEEEECc
Q 042021 45 KGKVFHVGDKLVFQYPVGAHNVFKVNG 71 (125)
Q Consensus 45 ~~~~f~vGD~L~F~~~~~~hsV~~v~~ 71 (125)
-...+++.|..+.+-.++..-+.+++.
T Consensus 41 ~~~~v~vdg~~ig~l~~g~y~~~~v~p 67 (117)
T PF11008_consen 41 VKPDVYVDGELIGELKNGGYFYVEVPP 67 (117)
T ss_pred ccceEEECCEEEEEeCCCeEEEEEECC
Confidence 344677777777776666666666654
No 79
>PF00686 CBM_20: Starch binding domain; InterPro: IPR002044 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain binds to starch, and is found often at the C terminus of a variety of glycosyl hydrolases acting on polysaccharides more rapidly than on oligosaccharides. Reations include: the hydrolysis of terminal 1,4-linked alpha-D-glucose residues successively from non-reducing ends of the chains with release of beta-D-glucose, the degradation of starch to cyclodextrins by formation of a 1,4-alpha-D-glucosidic bond, and hydrolysis of 1,4-alpha-glucosidic linkages in polysaccharides to remove successive maltose units from the non-reducing ends of the chains.; GO: 0003824 catalytic activity, 0005975 carbohydrate metabolic process; PDB: 1KUL_A 1ACZ_A 1AC0_A 1KUM_A 2Z0B_C 9CGT_A 3CGT_A 6CGT_A 4CGT_A 1CGT_A ....
Probab=38.53 E-value=44 Score=21.77 Aligned_cols=38 Identities=21% Similarity=0.574 Sum_probs=30.0
Q ss_pred eEEEecCCC---CCccC-----------CCchhhcCCCeEEeCCEEEEEecC
Q 042021 24 TKFIVGDDS---GWTVG-----------FDYQAWAKGKVFHVGDKLVFQYPV 61 (125)
Q Consensus 24 ~~~~VG~~~---gW~~~-----------~~Y~~Wa~~~~f~vGD~L~F~~~~ 61 (125)
..++||+.. .|+.. .+|..|.....+..|..+.|+|--
T Consensus 17 ~v~i~Gs~~~LG~W~~~~a~~l~~~~~~~~~~~W~~~v~lp~~~~~eYKy~i 68 (96)
T PF00686_consen 17 SVYIVGSCPELGNWDPKKAVPLQWNEGTENYPIWSATVDLPAGTPFEYKYVI 68 (96)
T ss_dssp EEEEEESSGGGTTTSGGGSBESEBESSSSTTTSEEEEEEEETTSEEEEEEEE
T ss_pred EEEEEECcHHhCCCChHhccccccccCCCCCCeEEEEEECcCCCEEEEEEEE
Confidence 567899853 59962 157899999999999999999963
No 80
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=36.96 E-value=18 Score=24.78 Aligned_cols=33 Identities=27% Similarity=0.409 Sum_probs=27.9
Q ss_pred EEEecCCccEEEEeCCCCCCccCCeEEEEecCC
Q 042021 92 VIVLATPGRKWYICGVRNHCNYGQKLVITVLPQ 124 (125)
Q Consensus 92 ~v~l~~~G~~YFic~~~~HC~~Gmkl~I~V~~~ 124 (125)
.+..+.||.+.|=|-...|=..||-..+.|.++
T Consensus 105 ~~~~~~~G~w~~HCHi~~H~~~GM~~~~~v~~~ 137 (138)
T PF07731_consen 105 RFRADNPGPWLFHCHILEHEDNGMMAVFVVGPQ 137 (138)
T ss_dssp EEEETSTEEEEEEESSHHHHHTT-EEEEEECHH
T ss_pred EEEeecceEEEEEEchHHHHhCCCeEEEEEcCC
Confidence 456679999999999999999999999998764
No 81
>PF04014 Antitoxin-MazE: Antidote-toxin recognition MazE; InterPro: IPR007159 This domain is found in AbrB from Bacillus subtilis. The product of the abrB gene is an ambiactive repressor and activator of the transcription of genes expressed during the transition state between vegetative growth and the onset of stationary phase and sporulation []. AbrB is thought to interact directly with the transcription initiation regions of genes under its control []. AbrB contains a helix-turn-helix structure, but this domain ends before the helix-turn-helix begins []. The product of the B. subtilis gene spoVT is another member of this family and is also a transcriptional regulator []. DNA-binding activity in this AbrB homologue requires hexamerisation []. Another family member has been isolated from the Sulfolobus solfataricus and has been identified as a homologue of bacterial repressor-like proteins. The Escherichia coli family member SohA or Prl1F appears to be bifunctional and is able to regulate its own expression as well as relieve the export block imposed by high-level synthesis of beta-galactosidase hybrid proteins [].; PDB: 2L66_A 2GLW_A 3TND_D 2W1T_B 2RO5_B 2FY9_A 2RO3_B 1UB4_C 3ZVK_G 1YFB_B ....
Probab=34.97 E-value=14 Score=21.31 Aligned_cols=33 Identities=15% Similarity=0.167 Sum_probs=23.1
Q ss_pred EecCCCCCccCCCchhhcCCCeEEeCCEEEEEecCC
Q 042021 27 IVGDDSGWTVGFDYQAWAKGKVFHVGDKLVFQYPVG 62 (125)
Q Consensus 27 ~VG~~~gW~~~~~Y~~Wa~~~~f~vGD~L~F~~~~~ 62 (125)
+||.+.+-+.+ .+|+....+..||.|.+....+
T Consensus 2 kvg~s~~v~iP---k~~~~~l~l~~Gd~v~i~~~~~ 34 (47)
T PF04014_consen 2 KVGNSGQVTIP---KEIREKLGLKPGDEVEIEVEGD 34 (47)
T ss_dssp EETTCSEEEE----HHHHHHTTSSTTTEEEEEEETT
T ss_pred EECCCceEECC---HHHHHHcCCCCCCEEEEEEeCC
Confidence 45555455555 3577777889999999999875
No 82
>COG4043 Preprotein translocase subunit Sec61beta [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.57 E-value=16 Score=25.43 Aligned_cols=16 Identities=31% Similarity=0.555 Sum_probs=12.9
Q ss_pred CCCeEEeCCEEEEEec
Q 042021 45 KGKVFHVGDKLVFQYP 60 (125)
Q Consensus 45 ~~~~f~vGD~L~F~~~ 60 (125)
..+..++||+|+|+=.
T Consensus 30 krr~ik~GD~IiF~~~ 45 (111)
T COG4043 30 KRRQIKPGDKIIFNGD 45 (111)
T ss_pred hhcCCCCCCEEEEcCC
Confidence 3568899999999854
No 83
>PF13605 DUF4141: Domain of unknown function (DUF4141)
Probab=34.21 E-value=62 Score=19.91 Aligned_cols=17 Identities=12% Similarity=0.282 Sum_probs=11.9
Q ss_pred hccccceeEEEecCCCC
Q 042021 17 ASTATSATKFIVGDDSG 33 (125)
Q Consensus 17 ~l~~~~a~~~~VG~~~g 33 (125)
++...+..+++|=|+..
T Consensus 13 ~~~~~a~AQWvV~DP~N 29 (55)
T PF13605_consen 13 LLAGPARAQWVVTDPGN 29 (55)
T ss_pred hcCCcceeEEEEeCchH
Confidence 55555778899888643
No 84
>PF15240 Pro-rich: Proline-rich
Probab=33.77 E-value=25 Score=26.70 Aligned_cols=15 Identities=27% Similarity=0.545 Sum_probs=6.8
Q ss_pred HHHHHHHHHHhcccc
Q 042021 7 FVLLLAIAAFASTAT 21 (125)
Q Consensus 7 ~~~~~~~~~~~l~~~ 21 (125)
|++||.+++|.|+++
T Consensus 2 LlVLLSvALLALSSA 16 (179)
T PF15240_consen 2 LLVLLSVALLALSSA 16 (179)
T ss_pred hhHHHHHHHHHhhhc
Confidence 444344444445555
No 85
>KOG3416 consensus Predicted nucleic acid binding protein [General function prediction only]
Probab=33.59 E-value=42 Score=24.29 Aligned_cols=32 Identities=22% Similarity=0.510 Sum_probs=19.9
Q ss_pred EEEecCCCCCccCCCchhhc-CCCeEEeCCEEEEEe
Q 042021 25 KFIVGDDSGWTVGFDYQAWA-KGKVFHVGDKLVFQY 59 (125)
Q Consensus 25 ~~~VG~~~gW~~~~~Y~~Wa-~~~~f~vGD~L~F~~ 59 (125)
..+|||..| ..+.+-|- ....|++||+|.|.=
T Consensus 40 ~~kVaD~Tg---sI~isvW~e~~~~~~PGDIirLt~ 72 (134)
T KOG3416|consen 40 SCKVADETG---SINISVWDEEGCLIQPGDIIRLTG 72 (134)
T ss_pred EEEEecccc---eEEEEEecCcCcccCCccEEEecc
Confidence 456898766 11222333 245899999998763
No 86
>PRK10525 cytochrome o ubiquinol oxidase subunit II; Provisional
Probab=33.00 E-value=56 Score=26.80 Aligned_cols=29 Identities=17% Similarity=0.121 Sum_probs=23.8
Q ss_pred EEEecCCccEEEEeCCCCCCccC---CeEEEEec
Q 042021 92 VIVLATPGRKWYICGVRNHCNYG---QKLVITVL 122 (125)
Q Consensus 92 ~v~l~~~G~~YFic~~~~HC~~G---mkl~I~V~ 122 (125)
.++.+++|.|+-.|+. .|..| |++.|.+.
T Consensus 194 ~~~a~~~G~Y~G~CaE--yCG~gHs~M~f~v~v~ 225 (315)
T PRK10525 194 HLIANEPGTYDGISAS--YSGPGFSGMKFKAIAT 225 (315)
T ss_pred EEEcCCCEEEEEEChh--hcCccccCCeEEEEEE
Confidence 4677899999999987 67765 99998875
No 87
>PF14326 DUF4384: Domain of unknown function (DUF4384)
Probab=32.85 E-value=36 Score=21.82 Aligned_cols=16 Identities=25% Similarity=0.638 Sum_probs=13.4
Q ss_pred eEEeCCEEEEEecCCc
Q 042021 48 VFHVGDKLVFQYPVGA 63 (125)
Q Consensus 48 ~f~vGD~L~F~~~~~~ 63 (125)
+++.||.|.|.+....
T Consensus 2 ~~~~Ge~v~~~~~~~~ 17 (83)
T PF14326_consen 2 VYRVGERVRFRVTSNR 17 (83)
T ss_pred cccCCCEEEEEEEeCC
Confidence 5889999999998643
No 88
>PF11604 CusF_Ec: Copper binding periplasmic protein CusF; InterPro: IPR021647 CusF is a periplasmic protein involved in copper and silver resistance in Escherichia coil. CusF forms a five-stranded beta-barrel OB fold. Cu(I) binds to H36, M47 and M49 which are conserved residues in the protein []. ; PDB: 2L55_A 2VB3_X 1ZEQ_X 2QCP_X 3E6Z_X 2VB2_X.
Probab=32.52 E-value=26 Score=22.08 Aligned_cols=21 Identities=19% Similarity=0.173 Sum_probs=14.4
Q ss_pred hhcCCCeEEeCCEEEEEecCC
Q 042021 42 AWAKGKVFHVGDKLVFQYPVG 62 (125)
Q Consensus 42 ~Wa~~~~f~vGD~L~F~~~~~ 62 (125)
+-+.-..+++||.|.|.+...
T Consensus 36 ~~~~l~~l~~Gd~V~F~~~~~ 56 (70)
T PF11604_consen 36 DPVDLAGLKPGDKVRFTFERT 56 (70)
T ss_dssp TTSEESS-STT-EEEEEEEEE
T ss_pred ChhhhhcCCCCCEEEEEEEEC
Confidence 344456899999999999853
No 89
>PRK02898 cobalt transport protein CbiN; Provisional
Probab=32.28 E-value=27 Score=24.11 Aligned_cols=11 Identities=27% Similarity=0.625 Sum_probs=8.6
Q ss_pred CCCchhhcCCC
Q 042021 37 GFDYQAWAKGK 47 (125)
Q Consensus 37 ~~~Y~~Wa~~~ 47 (125)
.|+|+.|.+..
T Consensus 48 ~p~Y~PWf~Pl 58 (100)
T PRK02898 48 APDYEPWFEPL 58 (100)
T ss_pred CCCCccccccc
Confidence 57899998763
No 90
>PRK11479 hypothetical protein; Provisional
Probab=31.70 E-value=66 Score=25.93 Aligned_cols=21 Identities=19% Similarity=-0.054 Sum_probs=14.7
Q ss_pred CchhhcCCC-----eEEeCCEEEEEe
Q 042021 39 DYQAWAKGK-----VFHVGDKLVFQY 59 (125)
Q Consensus 39 ~Y~~Wa~~~-----~f~vGD~L~F~~ 59 (125)
+..+|...+ ..++||.|.|.-
T Consensus 50 s~~q~~~g~~Vs~~~LqpGDLVFfst 75 (274)
T PRK11479 50 SSFTEQGIKEITAPDLKPGDLLFSSS 75 (274)
T ss_pred cHHHHhCCcccChhhCCCCCEEEEec
Confidence 355665553 667999999863
No 91
>cd02859 AMPKbeta_GBD_like AMP-activated protein kinase (AMPK) beta subunit glycogen binding domain (GBD). AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as a alpha-beta-gamma heterotrimer. This domain is the glycogen binding domain of the beta subunit.
Probab=29.54 E-value=1.5e+02 Score=18.69 Aligned_cols=16 Identities=25% Similarity=0.571 Sum_probs=13.0
Q ss_pred EEEEEecCCceeEEEE
Q 042021 54 KLVFQYPVGAHNVFKV 69 (125)
Q Consensus 54 ~L~F~~~~~~hsV~~v 69 (125)
.+.|+|..+..+|..+
T Consensus 3 ~v~f~~~~~a~~V~v~ 18 (79)
T cd02859 3 PTTFVWPGGGKEVYVT 18 (79)
T ss_pred EEEEEEcCCCcEEEEE
Confidence 4789999878888876
No 92
>PLN02991 oxidoreductase
Probab=29.02 E-value=2.5e+02 Score=24.69 Aligned_cols=78 Identities=9% Similarity=-0.034 Sum_probs=44.2
Q ss_pred CCeEEeCCEEEEEecCC--------ceeEEEECcccCccCC-CCCCccccccCceEEEe-cCCccEEEEeCCCCCCccCC
Q 042021 46 GKVFHVGDKLVFQYPVG--------AHNVFKVNGTAFQNCQ-KPPLREALTTGNDVIVL-ATPGRKWYICGVRNHCNYGQ 115 (125)
Q Consensus 46 ~~~f~vGD~L~F~~~~~--------~hsV~~v~~~~y~~C~-~~~~~~~~~~G~~~v~l-~~~G~~YFic~~~~HC~~Gm 115 (125)
..++..||.|+.+.... -|.+.|......|.=. ..-|+.+..+=.-.|++ +.+|++||=+-...+-..|.
T Consensus 60 ~I~~~~GD~v~V~V~N~L~~~ttiHWHGi~q~~~~~~DGv~~tQcpI~PG~sftY~F~~~~q~GT~WYHsH~~~q~~~Gl 139 (543)
T PLN02991 60 DIISVTNDNLIINVFNHLDEPFLISWSGIRNWRNSYQDGVYGTTCPIPPGKNYTYALQVKDQIGSFYYFPSLGFHKAAGG 139 (543)
T ss_pred cEEEECCCEEEEEecCCCCCCccEEECCcccCCCccccCCCCCCCccCCCCcEEEEEEeCCCCcceEEecCcchhhhCCC
Confidence 35899999999888754 2444443211112100 00122222111226777 47999999887766656677
Q ss_pred eEEEEecC
Q 042021 116 KLVITVLP 123 (125)
Q Consensus 116 kl~I~V~~ 123 (125)
.-.+.|.+
T Consensus 140 ~G~lIV~~ 147 (543)
T PLN02991 140 FGAIRISS 147 (543)
T ss_pred eeeEEEeC
Confidence 66666653
No 93
>TIGR01451 B_ant_repeat conserved repeat domain. This model represents the conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis, and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydial outer membrane proteins.
Probab=28.51 E-value=42 Score=19.87 Aligned_cols=17 Identities=18% Similarity=0.436 Sum_probs=13.2
Q ss_pred cCCCeEEeCCEEEEEec
Q 042021 44 AKGKVFHVGDKLVFQYP 60 (125)
Q Consensus 44 a~~~~f~vGD~L~F~~~ 60 (125)
++..++.+||.|.|.-.
T Consensus 3 ~d~~~~~~Gd~v~Yti~ 19 (53)
T TIGR01451 3 VDKTVATIGDTITYTIT 19 (53)
T ss_pred cCccccCCCCEEEEEEE
Confidence 34668999999998764
No 94
>PF01345 DUF11: Domain of unknown function DUF11; InterPro: IPR001434 This group of sequences is represented by a conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis (Streptococcus faecalis), and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydia trachomatis outer membrane proteins. In C. trachomatis, three cysteine-rich proteins (also believed to be lipoproteins), MOMP, OMP6 and OMP3, make up the extracellular matrix of the outer membrane []. They are involved in the essential structural integrity of both the elementary body (EB) and recticulate body (RB) phase. They are thought to be involved in porin formation and, as these bacteria lack the peptidoglycan layer common to most Gram-negative microbes, such proteins are highly important in the pathogenicity of the organism.; GO: 0005727 extrachromosomal circular DNA
Probab=28.48 E-value=40 Score=20.90 Aligned_cols=21 Identities=10% Similarity=0.154 Sum_probs=17.6
Q ss_pred chhhcCCCeEEeCCEEEEEec
Q 042021 40 YQAWAKGKVFHVGDKLVFQYP 60 (125)
Q Consensus 40 Y~~Wa~~~~f~vGD~L~F~~~ 60 (125)
..++++..++.+||.|+|...
T Consensus 28 ~~k~~~~~~~~~Gd~v~ytit 48 (76)
T PF01345_consen 28 ITKTVNPSTANPGDTVTYTIT 48 (76)
T ss_pred EEEecCCCcccCCCEEEEEEE
Confidence 456778889999999998775
No 95
>PF02933 CDC48_2: Cell division protein 48 (CDC48), domain 2; InterPro: IPR004201 This domain has a double psi-beta barrel fold and includes VCP-like ATPase and N-ethylmaleimide sensitive fusion protein N-terminal domains. Both the VAT and NSF N-terminal functional domains consist of two structural domains of which this is at the C terminus. The VAT-N domain found in AAA ATPases (IPR003959 from INTERPRO) is a substrate 185-residue recognition domain [].; GO: 0005524 ATP binding; PDB: 1QDN_B 1QCS_A 1CR5_C 3QQ8_A 3HU2_A 3HU1_E 3HU3_A 3QWZ_A 3TIW_B 3QQ7_A ....
Probab=28.37 E-value=52 Score=19.96 Aligned_cols=16 Identities=31% Similarity=0.584 Sum_probs=13.2
Q ss_pred CCeEEeCCEEEEEecC
Q 042021 46 GKVFHVGDKLVFQYPV 61 (125)
Q Consensus 46 ~~~f~vGD~L~F~~~~ 61 (125)
++.|..||.|.|.+..
T Consensus 16 ~~pv~~Gd~i~~~~~~ 31 (64)
T PF02933_consen 16 GRPVTKGDTIVFPFFG 31 (64)
T ss_dssp TEEEETT-EEEEEETT
T ss_pred CCCccCCCEEEEEeCC
Confidence 5789999999999974
No 96
>COG5510 Predicted small secreted protein [Function unknown]
Probab=28.36 E-value=45 Score=19.64 Aligned_cols=14 Identities=21% Similarity=0.235 Sum_probs=7.1
Q ss_pred HHHHHHHHHhcccc
Q 042021 8 VLLLAIAAFASTAT 21 (125)
Q Consensus 8 ~~~~~~~~~~l~~~ 21 (125)
.+++++.++++.++
T Consensus 9 i~~vll~s~llaaC 22 (44)
T COG5510 9 IALVLLASTLLAAC 22 (44)
T ss_pred HHHHHHHHHHHHHh
Confidence 33344445566655
No 97
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=27.96 E-value=3.1e+02 Score=24.32 Aligned_cols=76 Identities=16% Similarity=0.184 Sum_probs=0.0
Q ss_pred CeEEeCCEEEEEecCC--------ceeEEEECcccCccCCCCCCcc-ccccCce---EEEec-CCccEEEEeCCCCCCcc
Q 042021 47 KVFHVGDKLVFQYPVG--------AHNVFKVNGTAFQNCQKPPLRE-ALTTGND---VIVLA-TPGRKWYICGVRNHCNY 113 (125)
Q Consensus 47 ~~f~vGD~L~F~~~~~--------~hsV~~v~~~~y~~C~~~~~~~-~~~~G~~---~v~l~-~~G~~YFic~~~~HC~~ 113 (125)
.+...||+|+.+.... -|.|.|-...--|. .-.++ +-..|.. .|+++ +.|++|+.+...-|=..
T Consensus 61 I~~~~gD~ivV~v~N~~~~~~sihWhGv~q~kn~w~DG---~~~TqCPI~Pg~~~tY~F~v~~q~GT~~yh~h~~~~Ra~ 137 (563)
T KOG1263|consen 61 INAEEGDTIVVNVVNRLDEPFSIHWHGVRQRKNPWQDG---VYITQCPIQPGENFTYRFTVKDQIGTLWYHSHVSWQRAT 137 (563)
T ss_pred EEEEeCCEEEEEEEeCCCCceEEEeccccccCCccccC---CccccCCcCCCCeEEEEEEeCCcceeEEEeecccccccc
Q ss_pred CCeEEEEecCCC
Q 042021 114 GQKLVITVLPQA 125 (125)
Q Consensus 114 Gmkl~I~V~~~~ 125 (125)
|+.-.+.|.+..
T Consensus 138 G~~G~liI~~~~ 149 (563)
T KOG1263|consen 138 GVFGALIINPRP 149 (563)
T ss_pred CceeEEEEcCCc
No 98
>COG1930 CbiN ABC-type cobalt transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=27.47 E-value=73 Score=21.77 Aligned_cols=10 Identities=20% Similarity=0.561 Sum_probs=7.6
Q ss_pred CCCchhhcCC
Q 042021 37 GFDYQAWAKG 46 (125)
Q Consensus 37 ~~~Y~~Wa~~ 46 (125)
.|+|..|.+.
T Consensus 46 ~p~YePWF~P 55 (97)
T COG1930 46 KPGYEPWFQP 55 (97)
T ss_pred CCCCCccccc
Confidence 5679988765
No 99
>PF02553 CbiN: Cobalt transport protein component CbiN; InterPro: IPR003705 The cobalt transport protein CbiN is part of the active cobalt transport system involved in uptake of cobalt in to the cell involved with cobalamin biosynthesis (vitamin B12). It has been suggested that CbiN may function as the periplasmic binding protein component of the active cobalt transport system [].; GO: 0015087 cobalt ion transmembrane transporter activity, 0006824 cobalt ion transport, 0009236 cobalamin biosynthetic process, 0016020 membrane
Probab=26.20 E-value=53 Score=21.39 Aligned_cols=11 Identities=27% Similarity=0.613 Sum_probs=9.0
Q ss_pred CCCchhhcCCC
Q 042021 37 GFDYQAWAKGK 47 (125)
Q Consensus 37 ~~~Y~~Wa~~~ 47 (125)
.|+|+.|.+..
T Consensus 46 ~p~Y~PWf~pl 56 (74)
T PF02553_consen 46 DPDYEPWFEPL 56 (74)
T ss_pred CCCCCcccccc
Confidence 57899999774
No 100
>cd05829 Sortase_E Sortase E (SrtE) is a membrane transpeptidase found in gram-positive bacteria that cleaves surface proteins at a cell sorting motif and catalyzes a transpeptidation reaction in which the surface protein substrate is covalently linked to peptidoglycan for display on the bacterial surface. Sortases are grouped into different classes and subfamilies based on sequence, membrane topology, genomic positioning, and cleavage site preference. The function of Sortase E is unknown. In two different sortase families, the N-terminus either functions as both a signal peptide for secretion and a stop-transfer signal for membrane anchoring, or it contains a signal peptide only and the C-terminus serves as a membrane anchor. Most gram-positive bacteria contain more than one sortase and it is thought that the different sortases anchor different surface protein classes. The sortase domain is a modified beta-barrel flanked by two (SrtA) or three (SrtB) short alpha-helices.
Probab=25.74 E-value=1.4e+02 Score=21.19 Aligned_cols=26 Identities=23% Similarity=0.293 Sum_probs=17.9
Q ss_pred CCeEEeCCEEEEEecCCceeEEEECc
Q 042021 46 GKVFHVGDKLVFQYPVGAHNVFKVNG 71 (125)
Q Consensus 46 ~~~f~vGD~L~F~~~~~~hsV~~v~~ 71 (125)
-..+++||.|..+...+.--.++|++
T Consensus 70 L~~l~~GD~I~v~~~~g~~~~Y~V~~ 95 (144)
T cd05829 70 LGDLRKGDKVEVTRADGQTATFRVDR 95 (144)
T ss_pred hhcCCCCCEEEEEECCCCEEEEEEeE
Confidence 34788999999999654434555543
No 101
>COG4446 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.37 E-value=57 Score=23.57 Aligned_cols=26 Identities=35% Similarity=0.521 Sum_probs=21.2
Q ss_pred CCCeEEeCCEEEEEecCCceeEEEECc
Q 042021 45 KGKVFHVGDKLVFQYPVGAHNVFKVNG 71 (125)
Q Consensus 45 ~~~~f~vGD~L~F~~~~~~hsV~~v~~ 71 (125)
.++-|.-=|-|+|..+. .|+|.+|.+
T Consensus 88 ~Srlf~FVDDlEfyl~~-d~~vi~vRS 113 (141)
T COG4446 88 TSRLFGFVDDLEFYLPQ-DHNVIWVRS 113 (141)
T ss_pred HHHHhhcccceEEecCC-CCceEEEee
Confidence 34567778999999987 699999954
No 102
>PRK09723 putative fimbrial-like adhesin protein; Provisional
Probab=25.22 E-value=4.4e+02 Score=22.66 Aligned_cols=43 Identities=26% Similarity=0.450 Sum_probs=23.6
Q ss_pred ceeEEEecCCCCCccCCCchhhcCCCeEEeCCE-EEEEecCCceeEEE
Q 042021 22 SATKFIVGDDSGWTVGFDYQAWAKGKVFHVGDK-LVFQYPVGAHNVFK 68 (125)
Q Consensus 22 ~a~~~~VG~~~gW~~~~~Y~~Wa~~~~f~vGD~-L~F~~~~~~hsV~~ 68 (125)
....+.||+..|=..+. +.|.. +=..||. +.|+|.....+++-
T Consensus 26 ~~~~~~vg~~~~~~~~~--~~~~~--~g~~~d~~~~f~~~~~~~~~~~ 69 (421)
T PRK09723 26 DNVSYIVGNYYGVGPSD--QKWNE--TGPSGDATVTFRYATSTNNLVF 69 (421)
T ss_pred CceEEEEccccccCCcc--ccccc--cCCCcceEEEeccccCCcceEE
Confidence 57899999965543221 22322 2234553 46777665555554
No 103
>COG3627 PhnJ Uncharacterized enzyme of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=25.12 E-value=53 Score=25.99 Aligned_cols=24 Identities=25% Similarity=0.674 Sum_probs=20.1
Q ss_pred eEEEecCCccEEEEeCCCCCCccC
Q 042021 91 DVIVLATPGRKWYICGVRNHCNYG 114 (125)
Q Consensus 91 ~~v~l~~~G~~YFic~~~~HC~~G 114 (125)
+.+.++.-|.+-|+|+...||+.-
T Consensus 257 DEvi~DD~G~rmfvCSDTD~C~~r 280 (291)
T COG3627 257 DEVVLDDKGGRMFVCSDTDFCEQR 280 (291)
T ss_pred eeeEEcCCCceEEEecCchHHHhH
Confidence 357788889999999999999753
No 104
>TIGR02594 conserved hypothetical protein TIGR02594. Members of this protein family known so far are restricted to the bacteria, and for the most to the proteobacteria. The function is unknown.
Probab=23.79 E-value=48 Score=23.41 Aligned_cols=17 Identities=24% Similarity=0.016 Sum_probs=13.7
Q ss_pred eEEeCCEEEEEecCCce
Q 042021 48 VFHVGDKLVFQYPVGAH 64 (125)
Q Consensus 48 ~f~vGD~L~F~~~~~~h 64 (125)
.-++||.|+|+.....|
T Consensus 73 ~p~~GDiv~f~~~~~~H 89 (129)
T TIGR02594 73 KPAYGCIAVKRRGGGGH 89 (129)
T ss_pred CCCccEEEEEECCCCCE
Confidence 45899999999876556
No 105
>PF02402 Lysis_col: Lysis protein; InterPro: IPR003059 The DNA sequence of the entire colicin E2 operon has been determined []. The operon comprises the colicin activity gene (ceaB), the colicin immunity gene (ceiB) and the lysis gene (celB), which is essential for colicin release from producing cells []. A putative LexA binding site is located upstream from ceaB, and a rho-independent terminator structure is located downstream from celB []. Comparison of the amino acid sequences of colicin E2 and cloacin DF13 reveal extensive similarity. These colicins have different modes of action and recognise different cell surface receptors; the two major regions of heterology at the C terminus, and in the C-terminal end of the central region are thought to correspond to the catalytic and receptor-recognition domains, respectively []. Sequence similarities between colicins E2, A and E1 [] are less striking. The colicin E2 (pyocin) immunity protein does not share similarity with either the colicin E3 or cloacin DF13 [] immunity proteins. By contrast, the lysis proteins of the ColE2, ColE1 and CloDF13 plasmids are almost identical except in the N-terminal regions, which themselves are similar to lipoprotein signal peptides []. Processing of the ColE2 prolysis protein to the mature form is prevented by globomycin, a specific inhibitor of the lipoprotein signal peptidase []. The mature ColE2 lysis protein is located in the cell envelope [].; GO: 0009405 pathogenesis, 0019835 cytolysis, 0019867 outer membrane
Probab=23.67 E-value=26 Score=20.74 Aligned_cols=20 Identities=15% Similarity=0.072 Sum_probs=10.5
Q ss_pred HHHHHHhccccceeEE-EecC
Q 042021 11 LAIAAFASTATSATKF-IVGD 30 (125)
Q Consensus 11 ~~~~~~~l~~~~a~~~-~VG~ 30 (125)
++++.++|.++.+... .|+|
T Consensus 9 i~~~~~~L~aCQaN~iRDvqG 29 (46)
T PF02402_consen 9 IFLLTMLLAACQANYIRDVQG 29 (46)
T ss_pred HHHHHHHHHHhhhcceecCCC
Confidence 4444566777743322 2665
No 106
>cd05810 CBM20_alpha_MTH Glucan 1,4-alpha-maltotetraohydrolase (alpha-MTH), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Alpha-MTH, also known as maltotetraose-forming exo-amylase or G4-amylase, is an exo-amylase found in bacteria that degrades starch from its non-reducing end. Most alpha-MTHs have, in addition to the C-terminal CBM20 domain, an N-terminal glycosyl hydrolase family 13 catalytic domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio
Probab=23.61 E-value=63 Score=21.40 Aligned_cols=37 Identities=14% Similarity=0.488 Sum_probs=27.6
Q ss_pred eEEEecCCC---CCccC-------CCchhhcCCCeEEeCCEEEEEec
Q 042021 24 TKFIVGDDS---GWTVG-------FDYQAWAKGKVFHVGDKLVFQYP 60 (125)
Q Consensus 24 ~~~~VG~~~---gW~~~-------~~Y~~Wa~~~~f~vGD~L~F~~~ 60 (125)
..|++|+.. .|... .+|+.|.....+..|..|.|+|-
T Consensus 17 ~l~v~Gs~~~LG~W~~~~a~~l~~~~~~~W~~~v~lp~~~~veyKyv 63 (97)
T cd05810 17 SVYVVGNVPQLGNWSPADAVKLDPTAYPTWSGSISLPASTNVEWKCL 63 (97)
T ss_pred eEEEEEChHHhCCCChhhcccccCCCCCeEEEEEEcCCCCeEEEEEE
Confidence 457788743 58852 25777988888999999999984
No 107
>COG1430 Uncharacterized conserved protein [Function unknown]
Probab=23.48 E-value=44 Score=23.84 Aligned_cols=20 Identities=30% Similarity=0.484 Sum_probs=16.7
Q ss_pred hhcCCCeEEeCCEEEEEecC
Q 042021 42 AWAKGKVFHVGDKLVFQYPV 61 (125)
Q Consensus 42 ~Wa~~~~f~vGD~L~F~~~~ 61 (125)
.|++..++.+||.|.|..-.
T Consensus 104 G~~~~~~i~vGd~v~~~~~~ 123 (126)
T COG1430 104 GWAARLGIKVGDRVEFRPLG 123 (126)
T ss_pred CchhhcCCccCCEEEecccC
Confidence 37788899999999997654
No 108
>COG5569 Uncharacterized conserved protein [Function unknown]
Probab=23.38 E-value=68 Score=22.28 Aligned_cols=26 Identities=35% Similarity=0.408 Sum_probs=18.2
Q ss_pred cCCCeEEeCCEEEEEecC--CceeEEEE
Q 042021 44 AKGKVFHVGDKLVFQYPV--GAHNVFKV 69 (125)
Q Consensus 44 a~~~~f~vGD~L~F~~~~--~~hsV~~v 69 (125)
|.-..++-||.+.|.+.+ |.-.|.|+
T Consensus 79 a~lsglKeGdkV~fvferv~gk~tv~qv 106 (108)
T COG5569 79 AKLSGLKEGDKVEFVFERVNGKLTVQQV 106 (108)
T ss_pred HHhhccccCCcEEEEEEeeCCEEEEEEe
Confidence 444578899999999985 34445554
No 109
>PRK03760 hypothetical protein; Provisional
Probab=23.17 E-value=38 Score=23.59 Aligned_cols=17 Identities=18% Similarity=0.149 Sum_probs=13.9
Q ss_pred hcCCCeEEeCCEEEEEe
Q 042021 43 WAKGKVFHVGDKLVFQY 59 (125)
Q Consensus 43 Wa~~~~f~vGD~L~F~~ 59 (125)
|++...+.+||.|+|+.
T Consensus 100 ~~~~~gi~~Gd~v~~~~ 116 (117)
T PRK03760 100 KIRVLKVEVGDEIEWID 116 (117)
T ss_pred hHHHcCCCCCCEEEEee
Confidence 55677899999999874
No 110
>PF12195 End_beta_barrel: Beta barrel domain of bacteriophage endosialidase; InterPro: IPR024427 This entry represents the beta barrel domain of endosialidases which is nested in a beta propeller domain. This beta barrel domain is approximately 80 amino acids in length and represents one of the two sialic acid binding sites of the enzyme [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=22.82 E-value=71 Score=21.12 Aligned_cols=24 Identities=29% Similarity=0.372 Sum_probs=13.3
Q ss_pred CCeEEeCCEEEEEecC-----CceeEEEE
Q 042021 46 GKVFHVGDKLVFQYPV-----GAHNVFKV 69 (125)
Q Consensus 46 ~~~f~vGD~L~F~~~~-----~~hsV~~v 69 (125)
.+-+.+||.+.|.-+. +.-.|..|
T Consensus 25 ~HGl~vGD~VnFsnsa~tGvSG~mTVatV 53 (83)
T PF12195_consen 25 DHGLFVGDFVNFSNSAVTGVSGNMTVATV 53 (83)
T ss_dssp T----TT-EEEEES-SSTT--EEEEEEEE
T ss_pred cCceeecceEEEeccccccccccEEEEEE
Confidence 4567899999999874 35567666
No 111
>PF09065 Haemadin: Haemadin; InterPro: IPR015150 Members of this family adopt a secondary structure consisting of five short beta-strands (beta1-beta5), which are arranged in two antiparallel distorted sheets formed by strands beta1-beta4-beta5 and beta2-beta3 facing each other. This beta-sandwich is stabilised by six enclosed cysteines arranged in a [1-2, 3-5, 4-6] disulphide pairing resulting in a disulphide-rich hydrophobic core that is largely inaccessible to bulk solvent. The close proximity of disulphide bonds [3-5] and [4-6] organises haemadin into four distinct loops. The N-terminal segment of this domain binds to the active site of thrombin, inhibiting it []. ; PDB: 1E0F_K.
Probab=22.75 E-value=32 Score=17.75 Aligned_cols=12 Identities=50% Similarity=0.869 Sum_probs=6.7
Q ss_pred EeCCCCCCccCC
Q 042021 104 ICGVRNHCNYGQ 115 (125)
Q Consensus 104 ic~~~~HC~~Gm 115 (125)
||-.+..|+.||
T Consensus 7 iclygqscndgq 18 (27)
T PF09065_consen 7 ICLYGQSCNDGQ 18 (27)
T ss_dssp EE-TTEEESSS-
T ss_pred eeEecccccCCc
Confidence 455666777776
No 112
>cd05808 CBM20_alpha_amylase Alpha-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. This domain is found in several bacterial and fungal alpha-amylases including the maltopentaose-forming amylases (G5-amylases). Most alpha-amylases have, in addition to the C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13, which hydrolyzes internal alpha-1,4-glucosidic bonds in starch and related saccharides, yielding maltotriose and maltose. Two types of soluble substrates are used by alpha-amylases including long substrates (e.g. amylose) and short substrates (e.g. maltodextrins or maltooligosaccharides). The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. lafo
Probab=22.56 E-value=65 Score=20.63 Aligned_cols=37 Identities=19% Similarity=0.589 Sum_probs=27.1
Q ss_pred eEEEecCC---CCCccC-------CCchhhcCCCeEEeCCEEEEEec
Q 042021 24 TKFIVGDD---SGWTVG-------FDYQAWAKGKVFHVGDKLVFQYP 60 (125)
Q Consensus 24 ~~~~VG~~---~gW~~~-------~~Y~~Wa~~~~f~vGD~L~F~~~ 60 (125)
.-+++|+. ..|... .++..|.....+..|+.+.|+|-
T Consensus 16 ~l~v~G~~~~lG~W~~~~a~~l~~~~~~~W~~~v~l~~~~~~eYKy~ 62 (95)
T cd05808 16 NVYVVGNVPELGNWSPANAVALSAATYPVWSGTVDLPAGTAIEYKYI 62 (95)
T ss_pred EEEEEeCcHHhCCCChhhCccCCCCCCCCEEEEEEeCCCCeEEEEEE
Confidence 45778863 368753 24667988888888999999995
No 113
>PF14478 DUF4430: Domain of unknown function (DUF4430); PDB: 3U7Z_B 2BB5_A.
Probab=22.43 E-value=50 Score=20.34 Aligned_cols=14 Identities=21% Similarity=0.344 Sum_probs=8.5
Q ss_pred CCCeEEeCCEEEEE
Q 042021 45 KGKVFHVGDKLVFQ 58 (125)
Q Consensus 45 ~~~~f~vGD~L~F~ 58 (125)
....++.||.|+|.
T Consensus 55 ~~~~l~~GD~i~~~ 68 (68)
T PF14478_consen 55 GSYKLKDGDKITWY 68 (68)
T ss_dssp CC-B--TTEEEEE-
T ss_pred ceeEeCCCCEEEeC
Confidence 45689999999985
No 114
>PTZ00213 asparagine synthetase A; Provisional
Probab=22.20 E-value=88 Score=26.14 Aligned_cols=21 Identities=29% Similarity=0.757 Sum_probs=14.3
Q ss_pred eEEEecCCCCCcc---------CCCchhhcCC
Q 042021 24 TKFIVGDDSGWTV---------GFDYQAWAKG 46 (125)
Q Consensus 24 ~~~~VG~~~gW~~---------~~~Y~~Wa~~ 46 (125)
+.|+.| .||.. .|||++|.+.
T Consensus 198 aVFi~~--IG~~L~~G~~Hd~RApDYDDW~t~ 227 (348)
T PTZ00213 198 AVFLIG--IGCKLSSGDTHDLRAPDYDDWSSP 227 (348)
T ss_pred cEEEEe--ccCcCCCCCcCCCCCCCccccccc
Confidence 456665 56665 2789999944
No 115
>cd04466 S1_YloQ_GTPase S1_YloQ_GTPase: YloQ GTase family (also known as YjeQ and CpgA), S1-like RNA-binding domain. Proteins in the YloQ GTase family bind the ribosome and have GTPase activity. The precise role of this family is unknown. The protein structure is composed of three domains: an N-terminal S1 domain, a central GTPase domain, and a C-terminal zinc finger domain. This N-terminal S1 domain binds ssRNA. The central GTPase domain contains nucleotide-binding signature motifs: G1 (walker A), G3 (walker B) and G4 motifs. Experiments show that the bacterial YloQ and YjeQ proteins have low intrinsic GTPase activity. The C-terminal zinc-finger domain has structural similarity to a portion of the DNA-repair protein Rad51. This suggests a possible role for this GTPase as a regulator of translation, perhaps as a translation initiation factor. This family is classified based on the N-terminal S1 domain.
Probab=22.07 E-value=1.1e+02 Score=18.11 Aligned_cols=19 Identities=26% Similarity=0.315 Sum_probs=13.0
Q ss_pred eEEeCCEEEEEecCCceeE
Q 042021 48 VFHVGDKLVFQYPVGAHNV 66 (125)
Q Consensus 48 ~f~vGD~L~F~~~~~~hsV 66 (125)
...+||.+.+.-+.+.+.+
T Consensus 37 ~~~VGD~V~~~~~~~~~~~ 55 (68)
T cd04466 37 PPAVGDRVEFEPEDDGEGV 55 (68)
T ss_pred CCCCCcEEEEEECCCCcEE
Confidence 4689999999754434433
No 116
>PF11766 Candida_ALS_N: Cell-wall agglutinin N-terminal ligand-sugar binding ; InterPro: IPR024672 This N-terminal domain is likely to be the sugar or ligand binding domain of yeast alpha-agglutinin [] and agglutinin-like (ALS) proteins.; PDB: 2YLH_A 2Y7M_A 2Y7L_A 2Y7O_A 2Y7N_A.
Probab=21.87 E-value=35 Score=27.10 Aligned_cols=35 Identities=26% Similarity=0.517 Sum_probs=22.6
Q ss_pred CCeEEeCCEE------EEEecCCceeEEEE-CcccCccCCCC
Q 042021 46 GKVFHVGDKL------VFQYPVGAHNVFKV-NGTAFQNCQKP 80 (125)
Q Consensus 46 ~~~f~vGD~L------~F~~~~~~hsV~~v-~~~~y~~C~~~ 80 (125)
...+++||+. ||||...+-+|.+. ....|..|.+.
T Consensus 6 gs~v~~GDtFtL~MPcVfKf~t~~~sv~L~~~~~~yAtC~~~ 47 (249)
T PF11766_consen 6 GSNVSPGDTFTLTMPCVFKFTTSQTSVDLTAGGTTYATCTFQ 47 (249)
T ss_dssp TTT--TT-EEEEEEETEEEESSS-SEEEEEETTEEEEEEEEE
T ss_pred ccccCCCCEEEEecceEEEEecCCCEEEEEeCCEEEEEeccc
Confidence 3478999987 78888766677555 56888889753
No 117
>PF05257 CHAP: CHAP domain; InterPro: IPR007921 The CHAP (cysteine, histidine-dependent amidohydrolases/peptidases) domain is a region between 110 and 140 amino acids that is found in proteins from bacteria, bacteriophages, archaea and eukaryotes of the Trypanosomidae family. Many of these proteins are uncharacterised, but it has been proposed that they may function mainly in peptidoglycan hydrolysis. The CHAP domain is found in a wide range of protein architectures; it is commonly associated with bacterial type SH3 domains and with several families of amidase domains. It has been suggested that CHAP domain containing proteins utilise a catalytic cysteine residue in a nucleophilic-attack mechanism [, ]. The CHAP domain contains two invariant residues, a cysteine and a histidine. These residues form part of the putative active site of CHAP domain containing proteins. Secondary structure predictions show that the CHAP domain belongs to the alpha + beta structural class, with the N-terminal half largely containing predicted alpha helices and the C-terminal half principally composed of predicted beta strands [, ]. Some proteins known to contain a CHAP domain are listed below: Bacterial and trypanosomal glutathionylspermidine amidases. A variety of bacterial autolysins. A Nocardia aerocolonigenes putative esterase. Streptococcus pneumoniae choline-binding protein D. Methanosarcina mazei protein MM2478, a putative chloride channel. Several phage-encoded peptidoglycan hydrolases. Cysteine peptidases belonging to MEROPS peptidase family C51 (D-alanyl-glycyl endopeptidase, clan CA). ; PDB: 2LRJ_A 2VPM_B 2VOB_B 2VPS_A 2K3A_A 2IO9_A 2IO8_A 2IOB_A 2IOA_B 2IO7_B ....
Probab=21.56 E-value=77 Score=21.42 Aligned_cols=25 Identities=24% Similarity=0.528 Sum_probs=14.6
Q ss_pred CccCCCchhh--cCCCeEEeCCEEEEE
Q 042021 34 WTVGFDYQAW--AKGKVFHVGDKLVFQ 58 (125)
Q Consensus 34 W~~~~~Y~~W--a~~~~f~vGD~L~F~ 58 (125)
|........| ....+-++||.++|.
T Consensus 46 ~~~~~~~~~~~~~~~~~P~~Gdivv~~ 72 (124)
T PF05257_consen 46 WASSAGAQGYQNSTGSTPQPGDIVVWD 72 (124)
T ss_dssp CHHCCCHCCEETEECS---TTEEEEEE
T ss_pred HHHHHHhcccccccCcccccceEEEec
Confidence 5444333445 667788999999995
No 118
>PRK10861 signal peptidase I; Provisional
Probab=21.31 E-value=1.5e+02 Score=24.47 Aligned_cols=15 Identities=40% Similarity=0.625 Sum_probs=12.2
Q ss_pred CeEEeCCEEEEEecC
Q 042021 47 KVFHVGDKLVFQYPV 61 (125)
Q Consensus 47 ~~f~vGD~L~F~~~~ 61 (125)
.+.+-||.++|+++.
T Consensus 124 ~~p~RGDIVVF~~P~ 138 (324)
T PRK10861 124 GHPKRGDIVVFKYPE 138 (324)
T ss_pred CCCCCCCEEEEecCC
Confidence 456889999999974
No 119
>COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]
Probab=21.22 E-value=1.3e+02 Score=20.78 Aligned_cols=20 Identities=25% Similarity=0.370 Sum_probs=16.3
Q ss_pred CCeEEeCCEEEEEecCCcee
Q 042021 46 GKVFHVGDKLVFQYPVGAHN 65 (125)
Q Consensus 46 ~~~f~vGD~L~F~~~~~~hs 65 (125)
++.+.+||.|.+.|....-.
T Consensus 46 S~~VK~GD~l~i~~~~~~~~ 65 (100)
T COG1188 46 SKEVKVGDILTIRFGNKEFT 65 (100)
T ss_pred ccccCCCCEEEEEeCCcEEE
Confidence 56899999999999875333
No 120
>PF04225 OapA: Opacity-associated protein A LysM-like domain; InterPro: IPR007340 This entry includes the Haemophilus influenzae opacity-associated protein. This protein is required for efficient nasopharyngeal mucosal colonization, and its expression is associated with a distinctive transparent colony phenotype. OapA is thought to be a secreted protein, and its expression exhibits high-frequency phase variation [].; PDB: 2GU1_A.
Probab=20.17 E-value=1.1e+02 Score=20.04 Aligned_cols=21 Identities=19% Similarity=0.256 Sum_probs=11.8
Q ss_pred eEEeCCEEEEEecCCceeEEEE
Q 042021 48 VFHVGDKLVFQYPVGAHNVFKV 69 (125)
Q Consensus 48 ~f~vGD~L~F~~~~~~hsV~~v 69 (125)
++++||+|.|..+.. ..+.++
T Consensus 42 ~L~pGq~l~f~~d~~-g~L~~L 62 (85)
T PF04225_consen 42 RLKPGQTLEFQLDED-GQLTAL 62 (85)
T ss_dssp G--TT-EEEEEE-TT-S-EEEE
T ss_pred hCCCCCEEEEEECCC-CCEEEE
Confidence 899999999999863 344443
No 121
>PF14699 hGDE_N: N-terminal domain from the human glycogen debranching enzyme
Probab=20.14 E-value=1.9e+02 Score=19.00 Aligned_cols=32 Identities=16% Similarity=0.100 Sum_probs=21.2
Q ss_pred EEEecCCccE-EEEeCCCCCCccCCeEEEEecCC
Q 042021 92 VIVLATPGRK-WYICGVRNHCNYGQKLVITVLPQ 124 (125)
Q Consensus 92 ~v~l~~~G~~-YFic~~~~HC~~Gmkl~I~V~~~ 124 (125)
.+.+..||.+ ||++=...+ ....+.-++|.|.
T Consensus 49 di~i~~aGsF~yy~~y~~~~-~~~~~gYf~V~P~ 81 (86)
T PF14699_consen 49 DIPIYKAGSFCYYFTYEDEE-KRTGSGYFNVDPV 81 (86)
T ss_pred EEEcccCceEEEEEEECCCC-cccCcEEEEECce
Confidence 4778899986 444433334 7778888888763
No 122
>cd00645 AsnA Asparagine synthetase (aspartate-ammonia ligase) (AsnA) catalyses the conversion of L-aspartate to L-asparagine in the presence of ATP and ammonia. AsnA is a homodimeric enzyme which is structurally similiar to the catalytic core domain of class II aminoacyl-tRNA synthetases. Ammonia-dependent AsnA is not homologous to the glutamine-dependent asparagine synthetase AsnB.
Probab=20.12 E-value=98 Score=25.47 Aligned_cols=38 Identities=32% Similarity=0.604 Sum_probs=23.4
Q ss_pred eEEEecCCCCCcc---------CCCchhhcCCCeEEeCCEEEEEecCCceeEEEEC
Q 042021 24 TKFIVGDDSGWTV---------GFDYQAWAKGKVFHVGDKLVFQYPVGAHNVFKVN 70 (125)
Q Consensus 24 ~~~~VG~~~gW~~---------~~~Y~~Wa~~~~f~vGD~L~F~~~~~~hsV~~v~ 70 (125)
+.|+.| .|+.. .|||++|. --||.|+ |++-....+|++
T Consensus 187 aVFi~~--IG~~L~~g~~Hd~RapDYDDW~-----LNGDil~--w~~~l~~a~ELS 233 (309)
T cd00645 187 AVFIIG--IGGKLSDGKKHDGRAPDYDDWT-----LNGDILV--WNPVLQRAFELS 233 (309)
T ss_pred cEEEEe--ccCcCCCCCcCCCCCCCCcCcc-----ccceEEE--EchhcCceeeec
Confidence 456655 45655 27899999 5588876 333234455554
Done!