BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042025
(844 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XTZ|A Chain A, Crystal Structure Of The G Alpha Protein Atgpa1 From
Arabidopsis Thaliana
pdb|2XTZ|B Chain B, Crystal Structure Of The G Alpha Protein Atgpa1 From
Arabidopsis Thaliana
pdb|2XTZ|C Chain C, Crystal Structure Of The G Alpha Protein Atgpa1 From
Arabidopsis Thaliana
Length = 354
Score = 181 bits (459), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 125/377 (33%), Positives = 190/377 (50%), Gaps = 60/377 (15%)
Query: 442 STIFKQAKFLYGNKFTAEELQDIKLMIQSNMYRYLSILLDGRERFEEEATARMNAQGSHD 501
STIFKQ K L+ F EL+ +I +N+Y+ + +L DG + F + T S +
Sbjct: 23 STIFKQIKLLFQTGFDEGELKSYVPVIHANVYQTIKLLHDGTKEFAQNETDSAKYMLSSE 82
Query: 502 QISEAGGEADPSETTQCIYSINPRLKHFSDWLLDIIATGDLDAFFPAATREYAPLVDEVW 561
I+ I +L G LD +P T++ A ++ +W
Sbjct: 83 SIA-----------------IGEKLSEIG---------GRLD--YPRLTKDIAEGIETLW 114
Query: 562 KDPAIQETYKRKDELHFLPDVAEYFLSRAVEVSSNEYEPSDRDILYAEGVTQGNGLAFIE 621
KDPAIQET R +EL +PD +Y + +S Y P+ D+LYA + G+ I+
Sbjct: 115 KDPAIQETXARGNELQ-VPDXTKYLMENLKRLSDINYIPTKEDVLYAR--VRTTGVVEIQ 171
Query: 622 FSLDDRSPMSETYTDNLEVQPQPLTKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALS 681
FS P+ E EV Y+L V + NE KW+ +FE V V+FC A+S
Sbjct: 172 FS-----PVGENKKSG-EV-------YRLFDVGGQ-RNERRKWIHLFEGVTAVIFCAAIS 217
Query: 682 DYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFVLILNKYDLFEEKVNRV 741
+YDQ E +N+M+++KELF+ +++ PCF+ T F+L LNK+D+FE+KV V
Sbjct: 218 EYDQTLFEDEQ-------KNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLDV 270
Query: 742 HLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTG-----RKLFVWQARAR 796
L+ CEWF D+ PV + Q + H AY +V KF++LY T R +++ A
Sbjct: 271 PLNVCEWFRDYQPVSS--GKQEIEH-AYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTAL 327
Query: 797 DRVTVDEAFKYIREVLK 813
D+ V + FK + E L+
Sbjct: 328 DQKLVKKTFKLVDETLR 344
>pdb|1SHZ|A Chain A, Crystal Structure Of The P115rhogef Rgrgs Domain In A
Complex With Galpha(13):galpha(i1) Chimera
pdb|1SHZ|D Chain D, Crystal Structure Of The P115rhogef Rgrgs Domain In A
Complex With Galpha(13):galpha(i1) Chimera
Length = 340
Score = 103 bits (257), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 93/374 (24%), Positives = 158/374 (42%), Gaps = 73/374 (19%)
Query: 442 STIFKQAKFLYGNKFTAEELQDIKLMIQSNMYRYLSILLDGRERFEEEATARMNAQGSHD 501
ST KQ + ++G F ++ + I SN+ + + +L+D RE+
Sbjct: 26 STFLKQMRIIHGQDFDQRAREEFRPTIYSNVIKGMRVLVDAREKL--------------- 70
Query: 502 QISEAGGEADPSETTQCIYSINPRLKHFSDWLLDIIATGDLDAFFPAATR---EYAPLVD 558
+ N H D L+ + A TR +Y P +
Sbjct: 71 ---------------HIPWGDNKNQLH-GDKLMAFDTRAPMAAQGMVETRVFLQYLPAIR 114
Query: 559 EVWKDPAIQETYKRKDELHFLPDVAEYFLSRAVEVSSNEYEPSDRDILYAEGVTQGNGLA 618
+W+D IQ Y R+ E L + +YFL ++ +Y PS +DIL A T+G +
Sbjct: 115 ALWEDSGIQNAYDRRREFQ-LGESVKYFLDNLDKLGVPDYIPSQQDILLARRPTKG--IH 171
Query: 619 FIEFSLDDRSPMSETYTDNLEVQPQPLTKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCV 678
F+ D +++ V + +E KW E FE V ++FCV
Sbjct: 172 ETHFTFKD-------------------LHFKMFDVGGQ-RSERKKWFECFEGVTAIIFCV 211
Query: 679 ALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFVLILNKYDLFEEKV 738
ALSDYDQ+ + + N+M +S +LF+ + + F DT +L LNK DLFEEK+
Sbjct: 212 ALSDYDQVLMEDRQT-------NRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKI 264
Query: 739 NRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDR 798
+ L+ C + +++ T+ +A Y+ +F+DL ++++ A D
Sbjct: 265 KKSPLTIC--YPEYAGSNTY-------EEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDT 315
Query: 799 VTVDEAFKYIREVL 812
V F + +V+
Sbjct: 316 KNVQFVFDAVTDVI 329
>pdb|3UMR|A Chain A, Crystal Structure Of The G202d Mutant Of Human G-Alpha-I1
Length = 354
Score = 99.4 bits (246), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 88/371 (23%), Positives = 156/371 (42%), Gaps = 74/371 (19%)
Query: 442 STIFKQAKFLYGNKFTAEELQDIKLMIQSNMYRYLSILLDGRERFEEEATARMNAQGSHD 501
STI KQ K ++ ++ EE + K ++ SN + + ++ R +
Sbjct: 47 STIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLK-------------- 92
Query: 502 QISEAGGEADPSETTQCIYSINPRLKHFSDWLLDIIATGDLDAFFPAATREYAPLVDEVW 561
+ G A + Q L ++A + F A E A ++ +W
Sbjct: 93 --IDFGDSARADDARQ----------------LFVLAGAAEEGFMTA---ELAGVIKRLW 131
Query: 562 KDPAIQETYKRKDELHFLPDVAEYFLSRAVEVSSNEYEPSDRDILYAEGVTQGNGLAFIE 621
KD +Q + R E L D A Y+L+ ++ Y P+ +D+L + G+
Sbjct: 132 KDSGVQACFNRSREYQ-LNDSAAYYLNDLDRIAQPNYIPTQQDVLRTR--VKTTGIVETH 188
Query: 622 FSLDDRSPMSETYTDNLEVQPQPLTKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALS 681
F+ D +++ V+ + +E KW+ FE V ++FCVALS
Sbjct: 189 FTFKD-------------------LHFKMFDVDGQ-RSERKKWIHCFEGVTAIIFCVALS 228
Query: 682 DYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFVLILNKYDLFEEKVNRV 741
DYD + E N+M +S +LF+ + + CF DT +L LNK DLFEEK+ +
Sbjct: 229 DYDLVLAEDEE-------MNRMHESMKLFDSICNNKCFTDTSIILFLNKKDLFEEKIKKS 281
Query: 742 HLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTV 801
L+ C + +++ T+ +A Y+ +F+DL ++++ A D V
Sbjct: 282 PLTIC--YPEYAGSNTY-------EEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNV 332
Query: 802 DEAFKYIREVL 812
F + +V+
Sbjct: 333 QFVFDAVTDVI 343
>pdb|4G5O|A Chain A, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
pdb|4G5O|B Chain B, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
pdb|4G5O|C Chain C, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
pdb|4G5O|D Chain D, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
Length = 330
Score = 96.7 bits (239), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 89/382 (23%), Positives = 159/382 (41%), Gaps = 74/382 (19%)
Query: 442 STIFKQAKFLYGNKFTAEELQDIKLMIQSNMYRYLSILLDGRERFEEEATARMNAQGSHD 501
STI KQ K ++ + ++ +E + K+++ SN + + ++ R + + A +
Sbjct: 23 STIVKQMKIIHEDGYSEDECKQYKVVVYSNTIQSIIAIIRAMGRLKIDFGEAARADDAR- 81
Query: 502 QISEAGGEADPSETTQCIYSINPRLKHFSDWLLDIIATGDLDAFFPAATREYAPLVDEVW 561
Q+ G A+ T E A ++ +W
Sbjct: 82 QLFVLAGSAEEG----------------------------------VMTPELAGVIKRLW 107
Query: 562 KDPAIQETYKRKDELHFLPDVAEYFLSRAVEVSSNEYEPSDRDILYAEGVTQGNGLAFIE 621
+D +Q + R E + L D A Y+L+ +S + Y P+ +D+L + G+
Sbjct: 108 RDGGVQACFSRSRE-YLLNDSASYYLNDLDRISQSNYIPTQQDVLRTR--VKTTGIVETH 164
Query: 622 FSLDDRSPMSETYTDNLEVQPQPLTKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALS 681
F+ D Y +V Q +E KW+ FE V ++FCVALS
Sbjct: 165 FTFKD------LYFKMFDVGGQR--------------SERKKWIHCFEGVTAIIFCVALS 204
Query: 682 DYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFVLILNKYDLFEEKVNRV 741
DYD + E N+M +S +LF+ + + F +T +L LNK DLFEEK+ R
Sbjct: 205 DYDLVLAEDEE-------MNRMHESMKLFDSICNNKWFTETSIILFLNKKDLFEEKIKRS 257
Query: 742 HLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTV 801
L+ C + +++ T+ +A Y+ +F+DL ++++ A D V
Sbjct: 258 PLTIC--YPEYTGSNTY-------EEAAAYIQCQFEDLNRRKDTKEIYTHFTCATDTKNV 308
Query: 802 DEAFKYIREVLKWDDEKEDNYY 823
F + +V+ ++ KE Y
Sbjct: 309 QFVFDAVTDVIIKNNLKECGLY 330
>pdb|1GG2|A Chain A, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GIT|A Chain A, Structure Of Gtp-Binding Protein
Length = 353
Score = 95.5 bits (236), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 88/371 (23%), Positives = 155/371 (41%), Gaps = 74/371 (19%)
Query: 442 STIFKQAKFLYGNKFTAEELQDIKLMIQSNMYRYLSILLDGRERFEEEATARMNAQGSHD 501
STI KQ K ++ ++ EE + K ++ SN + + ++ R +
Sbjct: 46 STIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLK-------------- 91
Query: 502 QISEAGGEADPSETTQCIYSINPRLKHFSDWLLDIIATGDLDAFFPAATREYAPLVDEVW 561
+ G A + Q L ++A + F A E A ++ +W
Sbjct: 92 --IDFGDAARADDARQ----------------LFVLAGAAEEGFMTA---ELAGVIKRLW 130
Query: 562 KDPAIQETYKRKDELHFLPDVAEYFLSRAVEVSSNEYEPSDRDILYAEGVTQGNGLAFIE 621
KD +Q + R E L D A Y+L+ ++ Y P+ +D+L + G+
Sbjct: 131 KDSGVQACFNRSREYQ-LNDSAAYYLNDLDRIAQPNYIPTQQDVLRTR--VKTTGIVETH 187
Query: 622 FSLDDRSPMSETYTDNLEVQPQPLTKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALS 681
F+ D +++ V A+ +E KW+ FE V ++FCVALS
Sbjct: 188 FTFKD-------------------LHFKMFDVGAQ-RSERKKWIHCFEGVTAIIFCVALS 227
Query: 682 DYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFVLILNKYDLFEEKVNRV 741
DYD + E N+M +S +LF+ + + F DT +L LNK DLFEEK+ +
Sbjct: 228 DYDLVLAEDEE-------MNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKS 280
Query: 742 HLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTV 801
L+ C + +++ T+ +A Y+ +F+DL ++++ A D V
Sbjct: 281 PLTIC--YPEYAGSNTY-------EEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNV 331
Query: 802 DEAFKYIREVL 812
F + +V+
Sbjct: 332 QFVFDAVTDVI 342
>pdb|4G5R|A Chain A, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5R|B Chain B, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5R|C Chain C, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5R|D Chain D, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5S|A Chain A, Structure Of Lgn Gl3GALPHAI3 COMPLEX
pdb|4G5S|B Chain B, Structure Of Lgn Gl3GALPHAI3 COMPLEX
pdb|4G5S|C Chain C, Structure Of Lgn Gl3GALPHAI3 COMPLEX
pdb|4G5S|D Chain D, Structure Of Lgn Gl3GALPHAI3 COMPLEX
Length = 330
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 88/382 (23%), Positives = 161/382 (42%), Gaps = 74/382 (19%)
Query: 442 STIFKQAKFLYGNKFTAEELQDIKLMIQSNMYRYLSILLDGRERFEEEATARMNAQGSHD 501
STI KQ K ++ + ++ +E + K+++ SN + + ++ R + +
Sbjct: 23 STIVKQMKIIHEDGYSEDECKQYKVVVYSNTIQSIIAIIRAMGRLKIDF----------- 71
Query: 502 QISEAGGEADPSETTQCIYSINPRLKHFSDWLLDIIATGDLDAFFPAATREYAPLVDEVW 561
GEA ++ + ++ + + T E A ++ +W
Sbjct: 72 ------GEAARADDARQLFVLAGSAEE------------------GVMTPELAGVIKRLW 107
Query: 562 KDPAIQETYKRKDELHFLPDVAEYFLSRAVEVSSNEYEPSDRDILYAEGVTQGNGLAFIE 621
+D +Q + R E L D A Y+L+ +S + Y P+ +D+L + G+
Sbjct: 108 RDGGVQACFSRSREYQ-LNDSASYYLNDLDRISQSNYIPTQQDVLRTR--VKTTGIVETH 164
Query: 622 FSLDDRSPMSETYTDNLEVQPQPLTKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALS 681
F+ D Y +V Q +E KW+ FE V ++FCVALS
Sbjct: 165 FTFKD------LYFKMFDVGGQR--------------SERKKWIHCFEGVTAIIFCVALS 204
Query: 682 DYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFVLILNKYDLFEEKVNRV 741
DYD + E N+M +S +LF+ + + F +T +L LNK DLFEEK+ R
Sbjct: 205 DYDLVLAEDEE-------MNRMHESMKLFDSICNNKWFTETSIILFLNKKDLFEEKIKRS 257
Query: 742 HLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTV 801
L+ C + +++ T+ +A Y+ +F+DL ++++ A D V
Sbjct: 258 PLTIC--YPEYTGSNTY-------EEAAAYIQCQFEDLNRRKDTKEIYTHFTCATDTKNV 308
Query: 802 DEAFKYIREVLKWDDEKEDNYY 823
F + +V+ ++ KE Y
Sbjct: 309 QFVFDAVTDVIIKNNLKECGLY 330
>pdb|2IHB|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs10 And Activated Gi Alpha 3
Length = 323
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 89/382 (23%), Positives = 158/382 (41%), Gaps = 74/382 (19%)
Query: 442 STIFKQAKFLYGNKFTAEELQDIKLMIQSNMYRYLSILLDGRERFEEEATARMNAQGSHD 501
STI KQ K ++ + ++ +E + K+++ SN + + ++ R + + A +
Sbjct: 16 STIVKQMKIIHEDGYSEDECKQYKVVVYSNTIQSIIAIIRAMGRLKIDFGEAARADDAR- 74
Query: 502 QISEAGGEADPSETTQCIYSINPRLKHFSDWLLDIIATGDLDAFFPAATREYAPLVDEVW 561
Q+ G A+ T E A ++ +W
Sbjct: 75 QLFVLAGSAEEG----------------------------------VMTPELAGVIKRLW 100
Query: 562 KDPAIQETYKRKDELHFLPDVAEYFLSRAVEVSSNEYEPSDRDILYAEGVTQGNGLAFIE 621
+D +Q + R E L D A Y+L+ +S + Y P+ +D+L + G+
Sbjct: 101 RDGGVQACFSRSREYQ-LNDSASYYLNDLDRISQSNYIPTQQDVLRTR--VKTTGIVETH 157
Query: 622 FSLDDRSPMSETYTDNLEVQPQPLTKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALS 681
F+ D Y +V Q +E KW+ FE V ++FCVALS
Sbjct: 158 FTFKD------LYFKMFDVGGQR--------------SERKKWIHCFEGVTAIIFCVALS 197
Query: 682 DYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFVLILNKYDLFEEKVNRV 741
DYD + E N+M +S +LF+ + + F +T +L LNK DLFEEK+ R
Sbjct: 198 DYDLVLAEDEE-------MNRMHESMKLFDSICNNKWFTETSIILFLNKKDLFEEKIKRS 250
Query: 742 HLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTV 801
L+ C + +++ T+ +A Y+ +F+DL ++++ A D V
Sbjct: 251 PLTIC--YPEYTGSNTY-------EEAAAYIQCQFEDLNRRKDTKEIYTHFTCATDTKNV 301
Query: 802 DEAFKYIREVLKWDDEKEDNYY 823
F + +V+ ++ KE Y
Sbjct: 302 QFVFDAVTDVIIKNNLKECGLY 323
>pdb|3ONW|A Chain A, Structure Of A G-Alpha-I1 Mutant With Enhanced Affinity
For The Rgs14 Goloco Motif.
pdb|3ONW|B Chain B, Structure Of A G-Alpha-I1 Mutant With Enhanced Affinity
For The Rgs14 Goloco Motif
Length = 328
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 87/371 (23%), Positives = 155/371 (41%), Gaps = 74/371 (19%)
Query: 442 STIFKQAKFLYGNKFTAEELQDIKLMIQSNMYRYLSILLDGRERFEEEATARMNAQGSHD 501
STI KQ K ++ ++ EE + K ++ SN + + ++ R +
Sbjct: 21 STIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLK-------------- 66
Query: 502 QISEAGGEADPSETTQCIYSINPRLKHFSDWLLDIIATGDLDAFFPAATREYAPLVDEVW 561
+ G A + Q L ++A + F A E A ++ +W
Sbjct: 67 --IDFGDSARADDARQ----------------LFVLAGAAEEGFMTA---ELAGVIKRLW 105
Query: 562 KDPAIQETYKRKDELHFLPDVAEYFLSRAVEVSSNEYEPSDRDILYAEGVTQGNGLAFIE 621
KD +Q + R E + L D A Y+L+ ++ Y P+ +D+L + G+
Sbjct: 106 KDSGVQACFNRSRE-YLLNDSAAYYLNDLDRIAQPNYIPTQQDVLRTR--VKTTGIVETH 162
Query: 622 FSLDDRSPMSETYTDNLEVQPQPLTKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALS 681
F+ D +++ V + +E KW+ FE V ++FCVALS
Sbjct: 163 FTFKD-------------------LHFKMFDVGGQ-RSERKKWIHCFEGVTAIIFCVALS 202
Query: 682 DYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFVLILNKYDLFEEKVNRV 741
DYD + E N+M +S +LF+ + + F DT +L LNK DLFEEK+ +
Sbjct: 203 DYDLVLAEDEE-------MNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKS 255
Query: 742 HLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTV 801
L+ C + +++ T+ +A Y+ +F+DL ++++ A D V
Sbjct: 256 PLTIC--YPEYAGSNTY-------EEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNV 306
Query: 802 DEAFKYIREVL 812
F + +V+
Sbjct: 307 QFVFDAVTDVI 317
>pdb|2ZJY|A Chain A, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound
To Alf4 And Gdp
pdb|2ZJZ|A Chain A, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound
To Gdp
pdb|2ZJZ|B Chain B, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound
To Gdp
Length = 356
Score = 94.7 bits (234), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 87/371 (23%), Positives = 154/371 (41%), Gaps = 74/371 (19%)
Query: 442 STIFKQAKFLYGNKFTAEELQDIKLMIQSNMYRYLSILLDGRERFEEEATARMNAQGSHD 501
STI KQ K ++ ++ EE + K ++ SN + + ++ R +
Sbjct: 49 STIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLK-------------- 94
Query: 502 QISEAGGEADPSETTQCIYSINPRLKHFSDWLLDIIATGDLDAFFPAATREYAPLVDEVW 561
+ G A + Q L ++A + F A E A ++ +W
Sbjct: 95 --IDFGDAARADDARQ----------------LFVLAGAAEEGFMTA---ELAGVIKRLW 133
Query: 562 KDPAIQETYKRKDELHFLPDVAEYFLSRAVEVSSNEYEPSDRDILYAEGVTQGNGLAFIE 621
KD +Q + R E L D A Y+L+ ++ Y P+ +D+L + G+
Sbjct: 134 KDSGVQACFNRSREYQ-LNDSAAYYLNDLDRIAQPNYIPTQQDVLRTR--VKTTGIVETH 190
Query: 622 FSLDDRSPMSETYTDNLEVQPQPLTKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALS 681
F+ D +++ V + +E KW+ FE V ++FCVALS
Sbjct: 191 FTFKD-------------------LHFKMFDVGGQ-RSERKKWIHCFEGVTAIIFCVALS 230
Query: 682 DYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFVLILNKYDLFEEKVNRV 741
DYD + E N+M +S +LF+ + + F DT +L LNK DLFEEK+ +
Sbjct: 231 DYDLVLAEDEE-------MNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKS 283
Query: 742 HLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTV 801
L+ C + +++ T+ +A Y+ +F+DL ++++ A D V
Sbjct: 284 PLTIC--YPEYAGSNTY-------EEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNV 334
Query: 802 DEAFKYIREVL 812
F + +V+
Sbjct: 335 QFVFDAVTDVI 345
>pdb|2ODE|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs8 And Activated Gi Alpha 3
pdb|2ODE|C Chain C, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs8 And Activated Gi Alpha 3
pdb|2V4Z|A Chain A, The Crystal Structure Of The Human G-Protein Subunit Alpha
( Gnai3) In Complex With An Engineered Regulator Of G-
Protein Signaling Type 2 Domain (Rgs2)
Length = 350
Score = 94.7 bits (234), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 87/378 (23%), Positives = 160/378 (42%), Gaps = 74/378 (19%)
Query: 442 STIFKQAKFLYGNKFTAEELQDIKLMIQSNMYRYLSILLDGRERFEEEATARMNAQGSHD 501
STI KQ K ++ + ++ +E + K+++ SN + + ++ R + +
Sbjct: 46 STIVKQMKIIHEDGYSEDECKQYKVVVYSNTIQSIIAIIRAMGRLKIDF----------- 94
Query: 502 QISEAGGEADPSETTQCIYSINPRLKHFSDWLLDIIATGDLDAFFPAATREYAPLVDEVW 561
GEA ++ + ++ + + T E A ++ +W
Sbjct: 95 ------GEAARADDARQLFVLAGSAEE------------------GVMTPELAGVIKRLW 130
Query: 562 KDPAIQETYKRKDELHFLPDVAEYFLSRAVEVSSNEYEPSDRDILYAEGVTQGNGLAFIE 621
+D +Q + R E L D A Y+L+ +S + Y P+ +D+L + G+
Sbjct: 131 RDGGVQACFSRSREYQ-LNDSASYYLNDLDRISQSNYIPTQQDVLRTR--VKTTGIVETH 187
Query: 622 FSLDDRSPMSETYTDNLEVQPQPLTKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALS 681
F+ D Y +V Q +E KW+ FE V ++FCVALS
Sbjct: 188 FTFKD------LYFKMFDVGGQR--------------SERKKWIHCFEGVTAIIFCVALS 227
Query: 682 DYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFVLILNKYDLFEEKVNRV 741
DYD + E N+M +S +LF+ + + F +T +L LNK DLFEEK+ R
Sbjct: 228 DYDLVLAEDEE-------MNRMHESMKLFDSICNNKWFTETSIILFLNKKDLFEEKIKRS 280
Query: 742 HLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTV 801
L+ C + +++ T+ +A Y+ +F+DL ++++ A D V
Sbjct: 281 PLTIC--YPEYTGSNTY-------EEAAAYIQCQFEDLNRRKDTKEIYTHFTCATDTKNV 331
Query: 802 DEAFKYIREVLKWDDEKE 819
F + +V+ ++ KE
Sbjct: 332 QFVFDAVTDVIIKNNLKE 349
>pdb|3FFA|A Chain A, Crystal Structure Of A Fast Activating G Protein Mutant
pdb|3FFB|A Chain A, Gi-Alpha-1 Mutant In Gdp Bound Form
Length = 360
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 87/371 (23%), Positives = 154/371 (41%), Gaps = 74/371 (19%)
Query: 442 STIFKQAKFLYGNKFTAEELQDIKLMIQSNMYRYLSILLDGRERFEEEATARMNAQGSHD 501
STI KQ K ++ ++ EE + K ++ SN + + ++ R +
Sbjct: 53 STIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLK-------------- 98
Query: 502 QISEAGGEADPSETTQCIYSINPRLKHFSDWLLDIIATGDLDAFFPAATREYAPLVDEVW 561
+ G A + Q L ++A + F A E A ++ +W
Sbjct: 99 --IDFGDAARADDARQ----------------LFVLAGAAEEGFMTA---ELAGVIKRLW 137
Query: 562 KDPAIQETYKRKDELHFLPDVAEYFLSRAVEVSSNEYEPSDRDILYAEGVTQGNGLAFIE 621
KD +Q + R E L D A Y+L+ ++ Y P+ +D+L + G+
Sbjct: 138 KDSGVQACFNRSREYQ-LNDSAAYYLNDLDRIAQPNYIPTQQDVLRTR--VKTTGIVETH 194
Query: 622 FSLDDRSPMSETYTDNLEVQPQPLTKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALS 681
F+ D +++ V + +E KW+ FE V ++FCVALS
Sbjct: 195 FTFKD-------------------LHFKMFDVGGQ-RSERKKWIHCFEGVTAIIFCVALS 234
Query: 682 DYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFVLILNKYDLFEEKVNRV 741
DYD + E N+M +S +LF+ + + F DT +L LNK DLFEEK+ +
Sbjct: 235 DYDLVLAEDEE-------MNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKS 287
Query: 742 HLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTV 801
L+ C + +++ T+ +A Y+ +F+DL ++++ A D V
Sbjct: 288 PLTIC--YPEYAGSNTY-------EEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDAKNV 338
Query: 802 DEAFKYIREVL 812
F + +V+
Sbjct: 339 QFVFDAVTDVI 349
>pdb|1GP2|A Chain A, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1AGR|A Chain A, Complex Of Alf4-Activated Gi-Alpha-1 With Rgs4
pdb|1AGR|D Chain D, Complex Of Alf4-Activated Gi-Alpha-1 With Rgs4
pdb|1CIP|A Chain A, Gi-Alpha-1 Subunit Of Guanine Nucleotide-Binding Protein
Complexed With A Gtp Analogue
pdb|1BOF|A Chain A, Gi-Alpha-1 Bound To Gdp And Magnesium
pdb|1GDD|A Chain A, Tertiary And Quaternary Structural Changes In Gia1 Induced
By Gtp Hydrolysis
pdb|1GFI|A Chain A, Structures Of Active Conformations Of Gi Alpha 1 And The
Mechanism Of Gtp Hydrolysis
pdb|1GIA|A Chain A, Structure Of Active Conformations Of Gia1 And The
Mechanism Of Gtp Hydrolysis
Length = 353
Score = 94.0 bits (232), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 87/371 (23%), Positives = 154/371 (41%), Gaps = 74/371 (19%)
Query: 442 STIFKQAKFLYGNKFTAEELQDIKLMIQSNMYRYLSILLDGRERFEEEATARMNAQGSHD 501
STI KQ K ++ ++ EE + K ++ SN + + ++ R +
Sbjct: 46 STIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLK-------------- 91
Query: 502 QISEAGGEADPSETTQCIYSINPRLKHFSDWLLDIIATGDLDAFFPAATREYAPLVDEVW 561
+ G A + Q L ++A + F A E A ++ +W
Sbjct: 92 --IDFGDAARADDARQ----------------LFVLAGAAEEGFMTA---ELAGVIKRLW 130
Query: 562 KDPAIQETYKRKDELHFLPDVAEYFLSRAVEVSSNEYEPSDRDILYAEGVTQGNGLAFIE 621
KD +Q + R E L D A Y+L+ ++ Y P+ +D+L + G+
Sbjct: 131 KDSGVQACFNRSREYQ-LNDSAAYYLNDLDRIAQPNYIPTQQDVLRTR--VKTTGIVETH 187
Query: 622 FSLDDRSPMSETYTDNLEVQPQPLTKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALS 681
F+ D +++ V + +E KW+ FE V ++FCVALS
Sbjct: 188 FTFKD-------------------LHFKMFDVGGQ-RSERKKWIHCFEGVTAIIFCVALS 227
Query: 682 DYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFVLILNKYDLFEEKVNRV 741
DYD + E N+M +S +LF+ + + F DT +L LNK DLFEEK+ +
Sbjct: 228 DYDLVLAEDEE-------MNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKS 280
Query: 742 HLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTV 801
L+ C + +++ T+ +A Y+ +F+DL ++++ A D V
Sbjct: 281 PLTIC--YPEYAGSNTY-------EEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNV 331
Query: 802 DEAFKYIREVL 812
F + +V+
Sbjct: 332 QFVFDAVTDVI 342
>pdb|3QI2|A Chain A, A Galpha P-Loop Mutation Prevents Transition To The
Activated State: G42r Bound To Rgs14 Goloco
pdb|3QI2|B Chain B, A Galpha P-Loop Mutation Prevents Transition To The
Activated State: G42r Bound To Rgs14 Goloco
Length = 328
Score = 94.0 bits (232), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 87/371 (23%), Positives = 154/371 (41%), Gaps = 74/371 (19%)
Query: 442 STIFKQAKFLYGNKFTAEELQDIKLMIQSNMYRYLSILLDGRERFEEEATARMNAQGSHD 501
STI KQ K ++ ++ EE + K ++ SN + + ++ R +
Sbjct: 21 STIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLK-------------- 66
Query: 502 QISEAGGEADPSETTQCIYSINPRLKHFSDWLLDIIATGDLDAFFPAATREYAPLVDEVW 561
+ G A + Q L ++A + F A E A ++ +W
Sbjct: 67 --IDFGDSARADDARQ----------------LFVLAGAAEEGFMTA---ELAGVIKRLW 105
Query: 562 KDPAIQETYKRKDELHFLPDVAEYFLSRAVEVSSNEYEPSDRDILYAEGVTQGNGLAFIE 621
KD +Q + R E L D A Y+L+ ++ Y P+ +D+L + G+
Sbjct: 106 KDSGVQACFNRSREYQ-LNDSAAYYLNDLDRIAQPNYIPTQQDVLRTR--VKTTGIVETH 162
Query: 622 FSLDDRSPMSETYTDNLEVQPQPLTKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALS 681
F+ D +++ V + +E KW+ FE V ++FCVALS
Sbjct: 163 FTFKD-------------------LHFKMFDVGGQ-RSERKKWIHCFEGVTAIIFCVALS 202
Query: 682 DYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFVLILNKYDLFEEKVNRV 741
DYD + E N+M +S +LF+ + + F DT +L LNK DLFEEK+ +
Sbjct: 203 DYDLVLAEDEE-------MNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKS 255
Query: 742 HLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTV 801
L+ C + +++ T+ +A Y+ +F+DL ++++ A D V
Sbjct: 256 PLTIC--YPEYAGSNTY-------EEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNV 306
Query: 802 DEAFKYIREVL 812
F + +V+
Sbjct: 307 QFVFDAVTDVI 317
>pdb|3UMS|A Chain A, Crystal Structure Of The G202a Mutant Of Human G-Alpha-I1
Length = 354
Score = 94.0 bits (232), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 88/371 (23%), Positives = 154/371 (41%), Gaps = 74/371 (19%)
Query: 442 STIFKQAKFLYGNKFTAEELQDIKLMIQSNMYRYLSILLDGRERFEEEATARMNAQGSHD 501
STI KQ K ++ ++ EE + K ++ SN + + ++ R +
Sbjct: 47 STIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLK-------------- 92
Query: 502 QISEAGGEADPSETTQCIYSINPRLKHFSDWLLDIIATGDLDAFFPAATREYAPLVDEVW 561
+ G A + Q L ++A + F A E A ++ +W
Sbjct: 93 --IDFGDSARADDARQ----------------LFVLAGAAEEGFMTA---ELAGVIKRLW 131
Query: 562 KDPAIQETYKRKDELHFLPDVAEYFLSRAVEVSSNEYEPSDRDILYAEGVTQGNGLAFIE 621
KD +Q + R E L D A Y+L+ ++ Y P+ +D+L + G+
Sbjct: 132 KDSGVQACFNRSREYQ-LNDSAAYYLNDLDRIAQPNYIPTQQDVLRTR--VKTTGIVETH 188
Query: 622 FSLDDRSPMSETYTDNLEVQPQPLTKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALS 681
F+ D +++ V A +E KW+ FE V ++FCVALS
Sbjct: 189 FTFKD-------------------LHFKMFDV-AGQRSERKKWIHCFEGVTAIIFCVALS 228
Query: 682 DYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFVLILNKYDLFEEKVNRV 741
DYD + E N+M +S +LF+ + + F DT +L LNK DLFEEK+ +
Sbjct: 229 DYDLVLAEDEE-------MNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKS 281
Query: 742 HLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTV 801
L+ C + +++ T+ +A Y+ +F+DL ++++ A D V
Sbjct: 282 PLTIC--YPEYAGSNTY-------EEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNV 332
Query: 802 DEAFKYIREVL 812
F + +V+
Sbjct: 333 QFVFDAVTDVI 343
>pdb|2XNS|A Chain A, Crystal Structure Of Human G Alpha I1 Bound To A Designed
Helical Peptide Derived From The Goloco Motif Of Rgs14
pdb|2XNS|B Chain B, Crystal Structure Of Human G Alpha I1 Bound To A Designed
Helical Peptide Derived From The Goloco Motif Of Rgs14
Length = 327
Score = 93.6 bits (231), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 87/371 (23%), Positives = 154/371 (41%), Gaps = 74/371 (19%)
Query: 442 STIFKQAKFLYGNKFTAEELQDIKLMIQSNMYRYLSILLDGRERFEEEATARMNAQGSHD 501
STI KQ K ++ ++ EE + K ++ SN + + ++ R +
Sbjct: 20 STIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLK-------------- 65
Query: 502 QISEAGGEADPSETTQCIYSINPRLKHFSDWLLDIIATGDLDAFFPAATREYAPLVDEVW 561
+ G A + Q L ++A + F A E A ++ +W
Sbjct: 66 --IDFGDSARADDARQ----------------LFVLAGAAEEGFMTA---ELAGVIKRLW 104
Query: 562 KDPAIQETYKRKDELHFLPDVAEYFLSRAVEVSSNEYEPSDRDILYAEGVTQGNGLAFIE 621
KD +Q + R E L D A Y+L+ ++ Y P+ +D+L + G+
Sbjct: 105 KDSGVQACFNRSREYQ-LNDSAAYYLNDLDRIAQPNYIPTQQDVLRTR--VKTTGIVETH 161
Query: 622 FSLDDRSPMSETYTDNLEVQPQPLTKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALS 681
F+ D +++ V + +E KW+ FE V ++FCVALS
Sbjct: 162 FTFKD-------------------LHFKMFDVGGQ-RSERKKWIHCFEGVTAIIFCVALS 201
Query: 682 DYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFVLILNKYDLFEEKVNRV 741
DYD + E N+M +S +LF+ + + F DT +L LNK DLFEEK+ +
Sbjct: 202 DYDLVLAEDEE-------MNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKS 254
Query: 742 HLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTV 801
L+ C + +++ T+ +A Y+ +F+DL ++++ A D V
Sbjct: 255 PLTIC--YPEYAGSNTY-------EEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNV 305
Query: 802 DEAFKYIREVL 812
F + +V+
Sbjct: 306 QFVFDAVTDVI 316
>pdb|1AS0|A Chain A, Gtp-Gamma-S Bound G42v Gia1
pdb|1AS2|A Chain A, Gdp+pi Bound G42v Gia1
pdb|1AS3|A Chain A, Gdp Bound G42v Gia1
Length = 353
Score = 93.6 bits (231), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 87/371 (23%), Positives = 154/371 (41%), Gaps = 74/371 (19%)
Query: 442 STIFKQAKFLYGNKFTAEELQDIKLMIQSNMYRYLSILLDGRERFEEEATARMNAQGSHD 501
STI KQ K ++ ++ EE + K ++ SN + + ++ R +
Sbjct: 46 STIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLK-------------- 91
Query: 502 QISEAGGEADPSETTQCIYSINPRLKHFSDWLLDIIATGDLDAFFPAATREYAPLVDEVW 561
+ G A + Q L ++A + F A E A ++ +W
Sbjct: 92 --IDFGDAARADDARQ----------------LFVLAGAAEEGFMTA---ELAGVIKRLW 130
Query: 562 KDPAIQETYKRKDELHFLPDVAEYFLSRAVEVSSNEYEPSDRDILYAEGVTQGNGLAFIE 621
KD +Q + R E L D A Y+L+ ++ Y P+ +D+L + G+
Sbjct: 131 KDSGVQACFNRSREYQ-LNDSAAYYLNDLDRIAQPNYIPTQQDVLRTR--VKTTGIVETH 187
Query: 622 FSLDDRSPMSETYTDNLEVQPQPLTKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALS 681
F+ D +++ V + +E KW+ FE V ++FCVALS
Sbjct: 188 FTFKD-------------------LHFKMFDVGGQ-RSERKKWIHCFEGVTAIIFCVALS 227
Query: 682 DYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFVLILNKYDLFEEKVNRV 741
DYD + E N+M +S +LF+ + + F DT +L LNK DLFEEK+ +
Sbjct: 228 DYDLVLAEDEE-------MNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKS 280
Query: 742 HLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTV 801
L+ C + +++ T+ +A Y+ +F+DL ++++ A D V
Sbjct: 281 PLTIC--YPEYAGSNTY-------EEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNV 331
Query: 802 DEAFKYIREVL 812
F + +V+
Sbjct: 332 QFVFDAVTDVI 342
>pdb|1Y3A|A Chain A, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
pdb|1Y3A|B Chain B, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
pdb|1Y3A|C Chain C, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
pdb|1Y3A|D Chain D, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
Length = 329
Score = 93.6 bits (231), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 87/371 (23%), Positives = 154/371 (41%), Gaps = 74/371 (19%)
Query: 442 STIFKQAKFLYGNKFTAEELQDIKLMIQSNMYRYLSILLDGRERFEEEATARMNAQGSHD 501
STI KQ K ++ ++ EE + K ++ SN + + ++ R +
Sbjct: 22 STIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLK-------------- 67
Query: 502 QISEAGGEADPSETTQCIYSINPRLKHFSDWLLDIIATGDLDAFFPAATREYAPLVDEVW 561
+ G A + Q L ++A + F A E A ++ +W
Sbjct: 68 --IDFGDSARADDARQ----------------LFVLAGAAEEGFMTA---ELAGVIKRLW 106
Query: 562 KDPAIQETYKRKDELHFLPDVAEYFLSRAVEVSSNEYEPSDRDILYAEGVTQGNGLAFIE 621
KD +Q + R E L D A Y+L+ ++ Y P+ +D+L + G+
Sbjct: 107 KDSGVQACFNRSREYQ-LNDSAAYYLNDLDRIAQPNYIPTQQDVLRTR--VKTTGIVETH 163
Query: 622 FSLDDRSPMSETYTDNLEVQPQPLTKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALS 681
F+ D +++ V + +E KW+ FE V ++FCVALS
Sbjct: 164 FTFKD-------------------LHFKMFDVGGQ-RSERKKWIHCFEGVTAIIFCVALS 203
Query: 682 DYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFVLILNKYDLFEEKVNRV 741
DYD + E N+M +S +LF+ + + F DT +L LNK DLFEEK+ +
Sbjct: 204 DYDLVLAEDEE-------MNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKS 256
Query: 742 HLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTV 801
L+ C + +++ T+ +A Y+ +F+DL ++++ A D V
Sbjct: 257 PLTIC--YPEYAGSNTY-------EEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNV 307
Query: 802 DEAFKYIREVL 812
F + +V+
Sbjct: 308 QFVFDAVTDVI 318
>pdb|4G5Q|A Chain A, Structure Of Lgn Gl4GALPHAI1 COMPLEX
pdb|4G5Q|B Chain B, Structure Of Lgn Gl4GALPHAI1 COMPLEX
pdb|4G5Q|C Chain C, Structure Of Lgn Gl4GALPHAI1 COMPLEX
pdb|4G5Q|D Chain D, Structure Of Lgn Gl4GALPHAI1 COMPLEX
Length = 330
Score = 93.6 bits (231), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 87/371 (23%), Positives = 154/371 (41%), Gaps = 74/371 (19%)
Query: 442 STIFKQAKFLYGNKFTAEELQDIKLMIQSNMYRYLSILLDGRERFEEEATARMNAQGSHD 501
STI KQ K ++ ++ EE + K ++ SN + + ++ R +
Sbjct: 23 STIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLK-------------- 68
Query: 502 QISEAGGEADPSETTQCIYSINPRLKHFSDWLLDIIATGDLDAFFPAATREYAPLVDEVW 561
+ G A + Q L ++A + F A E A ++ +W
Sbjct: 69 --IDFGDSARADDARQ----------------LFVLAGAAEEGFMTA---ELAGVIKRLW 107
Query: 562 KDPAIQETYKRKDELHFLPDVAEYFLSRAVEVSSNEYEPSDRDILYAEGVTQGNGLAFIE 621
KD +Q + R E L D A Y+L+ ++ Y P+ +D+L + G+
Sbjct: 108 KDSGVQACFNRSREYQ-LNDSAAYYLNDLDRIAQPNYIPTQQDVLRTR--VKTTGIVETH 164
Query: 622 FSLDDRSPMSETYTDNLEVQPQPLTKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALS 681
F+ D +++ V + +E KW+ FE V ++FCVALS
Sbjct: 165 FTFKD-------------------LHFKMFDVGGQ-RSERKKWIHCFEGVTAIIFCVALS 204
Query: 682 DYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFVLILNKYDLFEEKVNRV 741
DYD + E N+M +S +LF+ + + F DT +L LNK DLFEEK+ +
Sbjct: 205 DYDLVLAEDEE-------MNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKS 257
Query: 742 HLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTV 801
L+ C + +++ T+ +A Y+ +F+DL ++++ A D V
Sbjct: 258 PLTIC--YPEYAGSNTY-------EEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNV 308
Query: 802 DEAFKYIREVL 812
F + +V+
Sbjct: 309 QFVFDAVTDVI 319
>pdb|1KJY|A Chain A, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
pdb|1KJY|C Chain C, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
pdb|2OM2|A Chain A, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
pdb|2OM2|C Chain C, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
Length = 325
Score = 93.6 bits (231), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 87/371 (23%), Positives = 154/371 (41%), Gaps = 74/371 (19%)
Query: 442 STIFKQAKFLYGNKFTAEELQDIKLMIQSNMYRYLSILLDGRERFEEEATARMNAQGSHD 501
STI KQ K ++ ++ EE + K ++ SN + + ++ R +
Sbjct: 18 STIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLK-------------- 63
Query: 502 QISEAGGEADPSETTQCIYSINPRLKHFSDWLLDIIATGDLDAFFPAATREYAPLVDEVW 561
+ G A + Q L ++A + F A E A ++ +W
Sbjct: 64 --IDFGDSARADDARQ----------------LFVLAGAAEEGFMTA---ELAGVIKRLW 102
Query: 562 KDPAIQETYKRKDELHFLPDVAEYFLSRAVEVSSNEYEPSDRDILYAEGVTQGNGLAFIE 621
KD +Q + R E L D A Y+L+ ++ Y P+ +D+L + G+
Sbjct: 103 KDSGVQACFNRSREYQ-LNDSAAYYLNDLDRIAQPNYIPTQQDVLRTR--VKTTGIVETH 159
Query: 622 FSLDDRSPMSETYTDNLEVQPQPLTKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALS 681
F+ D +++ V + +E KW+ FE V ++FCVALS
Sbjct: 160 FTFKD-------------------LHFKMFDVGGQ-RSERKKWIHCFEGVTAIIFCVALS 199
Query: 682 DYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFVLILNKYDLFEEKVNRV 741
DYD + E N+M +S +LF+ + + F DT +L LNK DLFEEK+ +
Sbjct: 200 DYDLVLAEDEE-------MNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKS 252
Query: 742 HLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTV 801
L+ C + +++ T+ +A Y+ +F+DL ++++ A D V
Sbjct: 253 PLTIC--YPEYAGSNTY-------EEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNV 303
Query: 802 DEAFKYIREVL 812
F + +V+
Sbjct: 304 QFVFDAVTDVI 314
>pdb|2GTP|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs1 And Activated Gi Alpha 1
pdb|2GTP|B Chain B, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs1 And Activated Gi Alpha 1
Length = 323
Score = 93.6 bits (231), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 87/371 (23%), Positives = 154/371 (41%), Gaps = 74/371 (19%)
Query: 442 STIFKQAKFLYGNKFTAEELQDIKLMIQSNMYRYLSILLDGRERFEEEATARMNAQGSHD 501
STI KQ K ++ ++ EE + K ++ SN + + ++ R +
Sbjct: 16 STIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLK-------------- 61
Query: 502 QISEAGGEADPSETTQCIYSINPRLKHFSDWLLDIIATGDLDAFFPAATREYAPLVDEVW 561
+ G A + Q L ++A + F A E A ++ +W
Sbjct: 62 --IDFGDSARADDARQ----------------LFVLAGAAEEGFMTA---ELAGVIKRLW 100
Query: 562 KDPAIQETYKRKDELHFLPDVAEYFLSRAVEVSSNEYEPSDRDILYAEGVTQGNGLAFIE 621
KD +Q + R E L D A Y+L+ ++ Y P+ +D+L + G+
Sbjct: 101 KDSGVQACFNRSREYQ-LNDSAAYYLNDLDRIAQPNYIPTQQDVLRTR--VKTTGIVETH 157
Query: 622 FSLDDRSPMSETYTDNLEVQPQPLTKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALS 681
F+ D +++ V + +E KW+ FE V ++FCVALS
Sbjct: 158 FTFKD-------------------LHFKMFDVGGQ-RSERKKWIHCFEGVTAIIFCVALS 197
Query: 682 DYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFVLILNKYDLFEEKVNRV 741
DYD + E N+M +S +LF+ + + F DT +L LNK DLFEEK+ +
Sbjct: 198 DYDLVLAEDEE-------MNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKS 250
Query: 742 HLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTV 801
L+ C + +++ T+ +A Y+ +F+DL ++++ A D V
Sbjct: 251 PLTIC--YPEYAGSNTY-------EEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNV 301
Query: 802 DEAFKYIREVL 812
F + +V+
Sbjct: 302 QFVFDAVTDVI 312
>pdb|2IK8|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs16 And Activated Gi Alpha 1
pdb|2IK8|C Chain C, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs16 And Activated Gi Alpha 1
Length = 324
Score = 93.6 bits (231), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 87/371 (23%), Positives = 154/371 (41%), Gaps = 74/371 (19%)
Query: 442 STIFKQAKFLYGNKFTAEELQDIKLMIQSNMYRYLSILLDGRERFEEEATARMNAQGSHD 501
STI KQ K ++ ++ EE + K ++ SN + + ++ R +
Sbjct: 17 STIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLK-------------- 62
Query: 502 QISEAGGEADPSETTQCIYSINPRLKHFSDWLLDIIATGDLDAFFPAATREYAPLVDEVW 561
+ G A + Q L ++A + F A E A ++ +W
Sbjct: 63 --IDFGDSARADDARQ----------------LFVLAGAAEEGFMTA---ELAGVIKRLW 101
Query: 562 KDPAIQETYKRKDELHFLPDVAEYFLSRAVEVSSNEYEPSDRDILYAEGVTQGNGLAFIE 621
KD +Q + R E L D A Y+L+ ++ Y P+ +D+L + G+
Sbjct: 102 KDSGVQACFNRSREYQ-LNDSAAYYLNDLDRIAQPNYIPTQQDVLRTR--VKTTGIVETH 158
Query: 622 FSLDDRSPMSETYTDNLEVQPQPLTKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALS 681
F+ D +++ V + +E KW+ FE V ++FCVALS
Sbjct: 159 FTFKD-------------------LHFKMFDVGGQ-RSERKKWIHCFEGVTAIIFCVALS 198
Query: 682 DYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFVLILNKYDLFEEKVNRV 741
DYD + E N+M +S +LF+ + + F DT +L LNK DLFEEK+ +
Sbjct: 199 DYDLVLAEDEE-------MNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKS 251
Query: 742 HLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTV 801
L+ C + +++ T+ +A Y+ +F+DL ++++ A D V
Sbjct: 252 PLTIC--YPEYAGSNTY-------EEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNV 302
Query: 802 DEAFKYIREVL 812
F + +V+
Sbjct: 303 QFVFDAVTDVI 313
>pdb|3QE0|A Chain A, A Galpha-I1 P-Loop Mutation Prevents Transition To The
Activated State
pdb|3QE0|B Chain B, A Galpha-I1 P-Loop Mutation Prevents Transition To The
Activated State
pdb|3QE0|C Chain C, A Galpha-I1 P-Loop Mutation Prevents Transition To The
Activated State
Length = 325
Score = 93.6 bits (231), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 87/371 (23%), Positives = 154/371 (41%), Gaps = 74/371 (19%)
Query: 442 STIFKQAKFLYGNKFTAEELQDIKLMIQSNMYRYLSILLDGRERFEEEATARMNAQGSHD 501
STI KQ K ++ ++ EE + K ++ SN + + ++ R +
Sbjct: 18 STIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLK-------------- 63
Query: 502 QISEAGGEADPSETTQCIYSINPRLKHFSDWLLDIIATGDLDAFFPAATREYAPLVDEVW 561
+ G A + Q L ++A + F A E A ++ +W
Sbjct: 64 --IDFGDSARADDARQ----------------LFVLAGAAEEGFMTA---ELAGVIKRLW 102
Query: 562 KDPAIQETYKRKDELHFLPDVAEYFLSRAVEVSSNEYEPSDRDILYAEGVTQGNGLAFIE 621
KD +Q + R E L D A Y+L+ ++ Y P+ +D+L + G+
Sbjct: 103 KDSGVQACFNRSREYQ-LNDSAAYYLNDLDRIAQPNYIPTQQDVLRTR--VKTTGIVETH 159
Query: 622 FSLDDRSPMSETYTDNLEVQPQPLTKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALS 681
F+ D +++ V + +E KW+ FE V ++FCVALS
Sbjct: 160 FTFKD-------------------LHFKMFDVGGQ-RSERKKWIHCFEGVTAIIFCVALS 199
Query: 682 DYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFVLILNKYDLFEEKVNRV 741
DYD + E N+M +S +LF+ + + F DT +L LNK DLFEEK+ +
Sbjct: 200 DYDLVLAEDEE-------MNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKS 252
Query: 742 HLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTV 801
L+ C + +++ T+ +A Y+ +F+DL ++++ A D V
Sbjct: 253 PLTIC--YPEYAGSNTY-------EEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNV 303
Query: 802 DEAFKYIREVL 812
F + +V+
Sbjct: 304 QFVFDAVTDVI 314
>pdb|1SVK|A Chain A, Structure Of The K180p Mutant Of Gi Alpha Subunit Bound To
Alf4 And Gdp
pdb|1SVS|A Chain A, Structure Of The K180p Mutant Of Gi Alpha Subunit Bound To
Gppnhp
Length = 353
Score = 93.2 bits (230), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 88/371 (23%), Positives = 154/371 (41%), Gaps = 74/371 (19%)
Query: 442 STIFKQAKFLYGNKFTAEELQDIKLMIQSNMYRYLSILLDGRERFEEEATARMNAQGSHD 501
STI KQ K ++ ++ EE + K ++ SN + + ++ R +
Sbjct: 46 STIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLK-------------- 91
Query: 502 QISEAGGEADPSETTQCIYSINPRLKHFSDWLLDIIATGDLDAFFPAATREYAPLVDEVW 561
+ G A + Q L ++A + F A E A ++ +W
Sbjct: 92 --IDFGDAARADDARQ----------------LFVLAGAAEEGFMTA---ELAGVIKRLW 130
Query: 562 KDPAIQETYKRKDELHFLPDVAEYFLSRAVEVSSNEYEPSDRDILYAEGVTQGNGLAFIE 621
KD +Q + R E L D A Y+L+ ++ Y P+ +D+L T G+
Sbjct: 131 KDSGVQACFNRSREYQ-LNDSAAYYLNDLDRIAQPNYIPTQQDVLRTRVPT--TGIVETH 187
Query: 622 FSLDDRSPMSETYTDNLEVQPQPLTKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALS 681
F+ D +++ V + +E KW+ FE V ++FCVALS
Sbjct: 188 FTFKD-------------------LHFKMFDVGGQ-RSERKKWIHCFEGVTAIIFCVALS 227
Query: 682 DYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFVLILNKYDLFEEKVNRV 741
DYD + E N+M +S +LF+ + + F DT +L LNK DLFEEK+ +
Sbjct: 228 DYDLVLAEDEE-------MNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKS 280
Query: 742 HLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTV 801
L+ C + +++ T+ +A Y+ +F+DL ++++ A D V
Sbjct: 281 PLTIC--YPEYAGSNTY-------EEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNV 331
Query: 802 DEAFKYIREVL 812
F + +V+
Sbjct: 332 QFVFDAVTDVI 342
>pdb|2G83|A Chain A, Structure Of Activated G-alpha-i1 Bound To A Nucleotide-
State-selective Peptide: Minimal Determinants For
Recognizing The Active Form Of A G Protein Alpha Subunit
pdb|2G83|B Chain B, Structure Of Activated G-alpha-i1 Bound To A Nucleotide-
State-selective Peptide: Minimal Determinants For
Recognizing The Active Form Of A G Protein Alpha Subunit
Length = 313
Score = 93.2 bits (230), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 87/371 (23%), Positives = 154/371 (41%), Gaps = 74/371 (19%)
Query: 442 STIFKQAKFLYGNKFTAEELQDIKLMIQSNMYRYLSILLDGRERFEEEATARMNAQGSHD 501
STI KQ K ++ ++ EE + K ++ SN + + ++ R +
Sbjct: 15 STIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLK-------------- 60
Query: 502 QISEAGGEADPSETTQCIYSINPRLKHFSDWLLDIIATGDLDAFFPAATREYAPLVDEVW 561
+ G A + Q L ++A + F A E A ++ +W
Sbjct: 61 --IDFGDSARADDARQ----------------LFVLAGAAEEGFMTA---ELAGVIKRLW 99
Query: 562 KDPAIQETYKRKDELHFLPDVAEYFLSRAVEVSSNEYEPSDRDILYAEGVTQGNGLAFIE 621
KD +Q + R E L D A Y+L+ ++ Y P+ +D+L + G+
Sbjct: 100 KDSGVQACFNRSREYQ-LNDSAAYYLNDLDRIAQPNYIPTQQDVLRTR--VKTTGIVETH 156
Query: 622 FSLDDRSPMSETYTDNLEVQPQPLTKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALS 681
F+ D +++ V + +E KW+ FE V ++FCVALS
Sbjct: 157 FTFKD-------------------LHFKMFDVGGQ-RSERKKWIHCFEGVTAIIFCVALS 196
Query: 682 DYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFVLILNKYDLFEEKVNRV 741
DYD + E N+M +S +LF+ + + F DT +L LNK DLFEEK+ +
Sbjct: 197 DYDLVLAEDEE-------MNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKS 249
Query: 742 HLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTV 801
L+ C + +++ T+ +A Y+ +F+DL ++++ A D V
Sbjct: 250 PLTIC--YPEYAGSNTY-------EEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNV 300
Query: 802 DEAFKYIREVL 812
F + +V+
Sbjct: 301 QFVFDAVTDVI 311
>pdb|3AH8|A Chain A, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
Length = 355
Score = 93.2 bits (230), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 98/191 (51%), Gaps = 30/191 (15%)
Query: 553 YAPLVDEVWKDPAIQETYKRKDELHFLPDVAEYFLSRAVEVSSNEYEPSDRDILYAEGVT 612
Y + +W DP IQE Y R+ E L D +Y+L+ V+ Y P+ +D+L T
Sbjct: 124 YVDAIKSLWNDPGIQECYDRRREYQ-LSDSTKYYLNDLDRVADPSYLPTQQDVLRVRVPT 182
Query: 613 QGNGLAFIEFSLDDRSPMSETYTDNLEVQPQPLTKYQLIRVNAKGMNEGCKWVEMFEDVR 672
G IE+ D +S + ++++ V + +E KW+ FE+V
Sbjct: 183 TG----IIEYPFDLQSVI-----------------FRMVDVGGQ-RSERRKWIHCFENVT 220
Query: 673 VVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFVLILNKYD 732
++F VALS+YDQ+ + ++ +N+M +SK LF +I +P F+++ +L LNK D
Sbjct: 221 SIMFLVALSEYDQVLVESDN-------ENRMEESKALFRTIITYPWFQNSSVILFLNKKD 273
Query: 733 LFEEKVNRVHL 743
L EEK+ HL
Sbjct: 274 LLEEKIMYSHL 284
>pdb|2BCJ|Q Chain Q, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
pdb|2RGN|A Chain A, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|D Chain D, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 353
Score = 92.8 bits (229), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 98/191 (51%), Gaps = 30/191 (15%)
Query: 553 YAPLVDEVWKDPAIQETYKRKDELHFLPDVAEYFLSRAVEVSSNEYEPSDRDILYAEGVT 612
Y + +W DP IQE Y R+ E L D +Y+L+ V+ Y P+ +D+L T
Sbjct: 122 YVDAIKSLWNDPGIQECYDRRREYQ-LSDSTKYYLNDLDRVADPSYLPTQQDVLRVRVPT 180
Query: 613 QGNGLAFIEFSLDDRSPMSETYTDNLEVQPQPLTKYQLIRVNAKGMNEGCKWVEMFEDVR 672
G IE+ D +S + ++++ V + +E KW+ FE+V
Sbjct: 181 TG----IIEYPFDLQSVI-----------------FRMVDVGGQR-SERRKWIHCFENVT 218
Query: 673 VVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFVLILNKYD 732
++F VALS+YDQ+ + ++ +N+M +SK LF +I +P F+++ +L LNK D
Sbjct: 219 SIMFLVALSEYDQVLVESDN-------ENRMEESKALFRTIITYPWFQNSSVILFLNKKD 271
Query: 733 LFEEKVNRVHL 743
L EEK+ HL
Sbjct: 272 LLEEKIMYSHL 282
>pdb|3C7K|A Chain A, Molecular Architecture Of Galphao And The Structural Basis
For Rgs16-Mediated Deactivation
pdb|3C7K|C Chain C, Molecular Architecture Of Galphao And The Structural Basis
For Rgs16-Mediated Deactivation
Length = 333
Score = 92.8 bits (229), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 77/305 (25%), Positives = 136/305 (44%), Gaps = 64/305 (20%)
Query: 442 STIFKQAKFLYGNKFTAEELQDIKLMIQSNMYRYLSILLDGRERFEEEATARMNAQGSHD 501
STI KQ K ++ + F+ E+++ K ++ SN + L+ ++ + D
Sbjct: 26 STIVKQMKIIHEDGFSGEDVKQYKPVVYSNTIQSLAAIVR-----------------AMD 68
Query: 502 QISEAGGEADPSETTQCIYSINPRLKHFSDWLLDIIATGDLDAFFPAATREYAPLVDEVW 561
+ G+ + ++ + + R++ D + F + E + +W
Sbjct: 69 TLGVEYGDKERKTDSKMVCDVVSRME-------------DTEPF----SAELLSAMMRLW 111
Query: 562 KDPAIQETYKRKDELHFLPDVAEYFLSRAVEVSSNEYEPSDRDILYAEGVTQGNGLAFIE 621
D IQE + R E L D A+Y+L + + +Y+P+++DIL + G+
Sbjct: 112 GDSGIQECFNRSREYQ-LNDSAKYYLDSLDRIGAGDYQPTEQDILRTR--VKTTGIVETH 168
Query: 622 FSLDDRSPMSETYTDNLEVQPQPLTKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALS 681
F+ NL ++L V + +E KW+ FEDV ++FCVALS
Sbjct: 169 FTFK-----------NLH--------FRLFDVGGQ-RSERKKWIHCFEDVTAIIFCVALS 208
Query: 682 DYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFVLILNKYDLFEEKVNRV 741
YDQ+ E++ N+M +S LF+ + + F DT +L LNK DLF EK+ +
Sbjct: 209 GYDQVLHEDETT-------NRMHESLMLFDSICNNKFFIDTSIILFLNKKDLFGEKIKKS 261
Query: 742 HLSTC 746
L+ C
Sbjct: 262 PLTIC 266
>pdb|1GIL|A Chain A, Structure Of Active Conformations Of Gia1 And The
Mechanism Of Gtp Hydrolysis
Length = 353
Score = 92.8 bits (229), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 88/372 (23%), Positives = 155/372 (41%), Gaps = 76/372 (20%)
Query: 442 STIFKQAKFLYGNKFTAEELQDIKLMIQSNMYRYLSILLDGRERFEEEATARMNAQGSHD 501
STI KQ K ++ ++ EE + K ++ SN + + ++ R +
Sbjct: 46 STIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLK-------------- 91
Query: 502 QISEAGGEADPSETTQCIYSINPRLKHFSDWLLDIIATGDLDAFFPAATREYAPLVDEVW 561
+ G A + Q L ++A + F A E A ++ +W
Sbjct: 92 --IDFGDAARADDARQ----------------LFVLAGAAEEGFMTA---ELAGVIKRLW 130
Query: 562 KDPAIQETYKRKDELHFLPDVAEYFLSRAVEVSSNEYEPSDRDILYAEGVTQGNGLAFIE 621
KD +Q + R E L D A Y+L+ ++ Y P+ +D+L + G+
Sbjct: 131 KDSGVQACFNRSREYQ-LNDSAAYYLNDLDRIAQPNYIPTQQDVLRTR--VKTTGIVETH 187
Query: 622 FSLDDRSPMSETYTDNLEVQPQPLTKYQLIRVNAKGM-NEGCKWVEMFEDVRVVVFCVAL 680
F+ D +++ V G+ +E KW+ FE V ++FCVAL
Sbjct: 188 FTFKD-------------------LHFKMFDVG--GLRSERKKWIHCFEGVTAIIFCVAL 226
Query: 681 SDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFVLILNKYDLFEEKVNR 740
SDYD + E N+M +S +LF+ + + F DT +L LNK DLFEEK+ +
Sbjct: 227 SDYDLVLAEDEE-------MNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKK 279
Query: 741 VHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVT 800
L+ C + +++ T+ +A Y+ +F+DL ++++ A D
Sbjct: 280 SPLTIC--YPEYAGSNTY-------EEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKN 330
Query: 801 VDEAFKYIREVL 812
V F + +V+
Sbjct: 331 VQFVFDAVTDVI 342
>pdb|3OHM|A Chain A, Crystal Structure Of Activated G Alpha Q Bound To Its
Effector Phospholipase C Beta 3
Length = 327
Score = 92.8 bits (229), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 98/191 (51%), Gaps = 30/191 (15%)
Query: 553 YAPLVDEVWKDPAIQETYKRKDELHFLPDVAEYFLSRAVEVSSNEYEPSDRDILYAEGVT 612
Y + +W DP IQE Y R+ E L D +Y+L+ V+ Y P+ +D+L T
Sbjct: 96 YVDAIKSLWNDPGIQECYDRRREYQ-LSDSTKYYLNDLDRVADPSYLPTQQDVLRVRVPT 154
Query: 613 QGNGLAFIEFSLDDRSPMSETYTDNLEVQPQPLTKYQLIRVNAKGMNEGCKWVEMFEDVR 672
G IE+ D +S + ++++ V + +E KW+ FE+V
Sbjct: 155 TG----IIEYPFDLQSVI-----------------FRMVDVGGQR-SERRKWIHCFENVT 192
Query: 673 VVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFVLILNKYD 732
++F VALS+YDQ+ + ++ +N+M +SK LF +I +P F+++ +L LNK D
Sbjct: 193 SIMFLVALSEYDQVLVESDN-------ENRMEESKALFRTIITYPWFQNSSVILFLNKKD 245
Query: 733 LFEEKVNRVHL 743
L EEK+ HL
Sbjct: 246 LLEEKIMYSHL 256
>pdb|4GNK|A Chain A, Crystal Structure Of Galphaq In Complex With Full-length
Human Plcbeta3
pdb|4GNK|C Chain C, Crystal Structure Of Galphaq In Complex With Full-length
Human Plcbeta3
Length = 353
Score = 92.4 bits (228), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 98/191 (51%), Gaps = 30/191 (15%)
Query: 553 YAPLVDEVWKDPAIQETYKRKDELHFLPDVAEYFLSRAVEVSSNEYEPSDRDILYAEGVT 612
Y + +W DP IQE Y R+ E L D +Y+L+ V+ Y P+ +D+L T
Sbjct: 122 YVDAIKSLWNDPGIQECYDRRREYQ-LSDSTKYYLNDLDRVADPSYLPTQQDVLRVRVPT 180
Query: 613 QGNGLAFIEFSLDDRSPMSETYTDNLEVQPQPLTKYQLIRVNAKGMNEGCKWVEMFEDVR 672
G IE+ D +S + ++++ V + +E KW+ FE+V
Sbjct: 181 TG----IIEYPFDLQSVI-----------------FRMVDVGGQR-SERRKWIHCFENVT 218
Query: 673 VVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFVLILNKYD 732
++F VALS+YDQ+ + ++ +N+M +SK LF +I +P F+++ +L LNK D
Sbjct: 219 SIMFLVALSEYDQVLVESDN-------ENRMEESKALFRTIITYPWFQNSSVILFLNKKD 271
Query: 733 LFEEKVNRVHL 743
L EEK+ HL
Sbjct: 272 LLEEKIMYSHL 282
>pdb|3D7M|A Chain A, Crystal Structure Of The G Protein Fast-Exchange Double
Mutant I56cQ333C
Length = 354
Score = 92.0 bits (227), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 87/371 (23%), Positives = 153/371 (41%), Gaps = 74/371 (19%)
Query: 442 STIFKQAKFLYGNKFTAEELQDIKLMIQSNMYRYLSILLDGRERFEEEATARMNAQGSHD 501
STI KQ K + ++ EE + K ++ SN + + ++ R +
Sbjct: 47 STIVKQMKICHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLK-------------- 92
Query: 502 QISEAGGEADPSETTQCIYSINPRLKHFSDWLLDIIATGDLDAFFPAATREYAPLVDEVW 561
+ G A + Q L ++A + F A E A ++ +W
Sbjct: 93 --IDFGDAARADDARQ----------------LFVLAGAAEEGFMTA---ELAGVIKRLW 131
Query: 562 KDPAIQETYKRKDELHFLPDVAEYFLSRAVEVSSNEYEPSDRDILYAEGVTQGNGLAFIE 621
KD +Q + R E L D A Y+L+ ++ Y P+ +D+L + G+
Sbjct: 132 KDSGVQACFNRSREYQ-LNDSAAYYLNDLDRIAQPNYIPTQQDVLRTR--VKTTGIVETH 188
Query: 622 FSLDDRSPMSETYTDNLEVQPQPLTKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALS 681
F+ D +++ V + +E KW+ FE V ++FCVALS
Sbjct: 189 FTFKD-------------------LHFKMFDVGGQ-RSERKKWIHCFEGVTAIIFCVALS 228
Query: 682 DYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFVLILNKYDLFEEKVNRV 741
DYD + E N+M +S +LF+ + + F DT +L LNK DLFEEK+ +
Sbjct: 229 DYDLVLAEDEE-------MNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKS 281
Query: 742 HLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTV 801
L+ C + +++ T+ +A Y+ +F+DL ++++ A D V
Sbjct: 282 PLTIC--YPEYAGSNTY-------EEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNV 332
Query: 802 DEAFKYIREVL 812
F + +V+
Sbjct: 333 CFVFDAVTDVI 343
>pdb|1BH2|A Chain A, A326s Mutant Of An Inhibitory Alpha Subunit
Length = 315
Score = 92.0 bits (227), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 86/371 (23%), Positives = 154/371 (41%), Gaps = 74/371 (19%)
Query: 442 STIFKQAKFLYGNKFTAEELQDIKLMIQSNMYRYLSILLDGRERFEEEATARMNAQGSHD 501
STI KQ K ++ ++ EE + K ++ SN + + ++ R +
Sbjct: 16 STIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLK-------------- 61
Query: 502 QISEAGGEADPSETTQCIYSINPRLKHFSDWLLDIIATGDLDAFFPAATREYAPLVDEVW 561
+ G A + Q L ++A + F A E A ++ +W
Sbjct: 62 --IDFGDAARADDARQ----------------LFVLAGAAEEGFMTA---ELAGVIKRLW 100
Query: 562 KDPAIQETYKRKDELHFLPDVAEYFLSRAVEVSSNEYEPSDRDILYAEGVTQGNGLAFIE 621
KD +Q + R E L D A Y+L+ ++ Y P+ +D+L + G+
Sbjct: 101 KDSGVQACFNRSREYQ-LNDSAAYYLNDLDRIAQPNYIPTQQDVLRTR--VKTTGIVETH 157
Query: 622 FSLDDRSPMSETYTDNLEVQPQPLTKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALS 681
F+ D +++ V + +E KW+ FE V ++FCVALS
Sbjct: 158 FTFKD-------------------LHFKMFDVGGQ-RSERKKWIHCFEGVTAIIFCVALS 197
Query: 682 DYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFVLILNKYDLFEEKVNRV 741
DYD + E N+M +S +LF+ + + F DT +L LNK DLFEEK+ +
Sbjct: 198 DYDLVLAEDEE-------MNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKS 250
Query: 742 HLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTV 801
L+ C + +++ T+ +A Y+ +F+DL ++++ + D V
Sbjct: 251 PLTIC--YPEYAGSNTY-------EEAAAYIQCQFEDLNKRKDTKEIYTHFTCSTDTKNV 301
Query: 802 DEAFKYIREVL 812
F + +V+
Sbjct: 302 QFVFDAVTDVI 312
>pdb|1FQJ|A Chain A, Crystal Structure Of The Heterotrimeric Complex Of The Rgs
Domain Of Rgs9, The Gamma Subunit Of Phosphodiesterase
And The GtI1 CHIMERA ALPHA SUBUNIT [(RGS9)-(Pdegamma)-
(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQJ|D Chain D, Crystal Structure Of The Heterotrimeric Complex Of The Rgs
Domain Of Rgs9, The Gamma Subunit Of Phosphodiesterase
And The GtI1 CHIMERA ALPHA SUBUNIT [(RGS9)-(Pdegamma)-
(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQK|A Chain A, Crystal Structure Of The Heterodimeric Complex Of The Rgs
Domain Of Rgs9, And The GtI1 CHIMERA ALPHA SUBUNIT
[(Rgs9)-(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQK|C Chain C, Crystal Structure Of The Heterodimeric Complex Of The Rgs
Domain Of Rgs9, And The GtI1 CHIMERA ALPHA SUBUNIT
[(Rgs9)-(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
Length = 325
Score = 90.9 bits (224), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 68/262 (25%), Positives = 123/262 (46%), Gaps = 39/262 (14%)
Query: 551 REYAPLVDEVWKDPAIQETYKRKDELHFLPDVAEYFLSRAVEVSSNEYEPSDRDILYAEG 610
+E + ++ +WKD IQ + R E L D A Y+LS + + Y P+++D+L +
Sbjct: 92 KEMSDIIQRLWKDSGIQACFDRASEYQ-LNDSAGYYLSDLERLVTPGYVPTEQDVLRSR- 149
Query: 611 VTQGNGLAFIEFSLDDRSPMSETYTDNLEVQPQPLTKYQLIRVNAKGMNEGCKWVEMFED 670
+ G+ +FS D + +++ V + +E KW+ FE
Sbjct: 150 -VKTTGIIETQFSFKDLN-------------------FRMFDVGGQ-RSERKKWIHCFEG 188
Query: 671 VRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFVLILNK 730
V ++FCVALSDYD + E N+M +S +LF+ + + F DT +L LNK
Sbjct: 189 VTAIIFCVALSDYDLVLAEDEE-------MNRMHESMKLFDSICNNKWFTDTSIILFLNK 241
Query: 731 YDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFV 790
DLFEEK+ + L+ C + +++ T+ +A Y+ ++F +L ++++
Sbjct: 242 KDLFEEKIKKSPLTIC--YPEYAGSNTY-------EEAGNYIKVQFLELNMRRDVKEIYS 292
Query: 791 WQARARDRVTVDEAFKYIREVL 812
A D V F + +++
Sbjct: 293 HMTCATDTQNVKFVFDAVTDII 314
>pdb|3V00|C Chain C, Studies Of A Constitutively Active G-Alpha Subunit Provide
Insights Into The Mechanism Of G Protein Activation.
pdb|3V00|B Chain B, Studies Of A Constitutively Active G-Alpha Subunit Provide
Insights Into The Mechanism Of G Protein Activation.
pdb|3V00|A Chain A, Studies Of A Constitutively Active G-Alpha Subunit Provide
Insights Into The Mechanism Of G Protein Activation
Length = 356
Score = 90.9 bits (224), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 68/262 (25%), Positives = 121/262 (46%), Gaps = 39/262 (14%)
Query: 551 REYAPLVDEVWKDPAIQETYKRKDELHFLPDVAEYFLSRAVEVSSNEYEPSDRDILYAEG 610
+E + ++ +WKD IQ + R E L D A Y+LS + + Y P+++D+L +
Sbjct: 123 KEMSDIIQRLWKDSGIQACFDRASEYQ-LNDSAGYYLSDLERLVTPGYVPTEQDVLRSR- 180
Query: 611 VTQGNGLAFIEFSLDDRSPMSETYTDNLEVQPQPLTKYQLIRVNAKGMNEGCKWVEMFED 670
+ G+ +FS D + +++ V + +E KW+ FE
Sbjct: 181 -VKTTGIIETQFSFKDLN-------------------FRMFDVGGQ-RSERKKWIHCFEG 219
Query: 671 VRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFVLILNK 730
V ++FCVALSDYD + E N+M +S LF + + F DT +L LNK
Sbjct: 220 VTAIIFCVALSDYDLVLAEDEE-------MNRMHESMHLFNSICNNKWFTDTSIILFLNK 272
Query: 731 YDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFV 790
DLFEEK+ + L+ C + +++ T+ +A Y+ ++F +L ++++
Sbjct: 273 KDLFEEKIKKSPLTIC--YPEYAGSNTY-------EEAGNYIKVQFLELNMRRDVKEIYS 323
Query: 791 WQARARDRVTVDEAFKYIREVL 812
A D V F + +++
Sbjct: 324 HMTCATDTQNVKFVFDAVTDII 345
>pdb|4EKC|A Chain A, Structure Of Human Regulator Of G Protein Signaling 2
(rgs2) In Complex With Murine Galpha-q(r183c)
pdb|4EKC|C Chain C, Structure Of Human Regulator Of G Protein Signaling 2
(rgs2) In Complex With Murine Galpha-q(r183c)
pdb|4EKD|A Chain A, Structure Of Human Regulator Of G Protein Signaling 2
(rgs2) In Complex With Murine Galpha-q(r183c)
Length = 347
Score = 89.7 bits (221), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 100/192 (52%), Gaps = 31/192 (16%)
Query: 552 EYAPLVDEVWKDPAIQETYKRKDELHFLPDVAEYFLSRAVEVSSNEYEPSDRDILYAEGV 611
+YA + +W DP IQE Y R+ E L D +Y+L+ V+ Y P+ +D+L
Sbjct: 116 DYAA-IKSLWNDPGIQECYDRRREYQ-LSDSTKYYLNDLDRVADPSYLPTQQDVLRVCVP 173
Query: 612 TQGNGLAFIEFSLDDRSPMSETYTDNLEVQPQPLTKYQLIRVNAKGMNEGCKWVEMFEDV 671
T G IE+ D +S + ++++ V + +E KW+ FE+V
Sbjct: 174 TTG----IIEYPFDLQSVI-----------------FRMVDVGGQR-SERRKWIHCFENV 211
Query: 672 RVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFVLILNKY 731
++F VALS+YDQ+ + ++ +N+M +SK LF +I +P F+++ +L LNK
Sbjct: 212 TSIMFLVALSEYDQVLVESDN-------ENRMEESKALFRTIITYPWFQNSSVILFLNKK 264
Query: 732 DLFEEKVNRVHL 743
DL EEK+ HL
Sbjct: 265 DLLEEKIMYSHL 276
>pdb|1GOT|A Chain A, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
Length = 350
Score = 88.2 bits (217), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/262 (25%), Positives = 121/262 (46%), Gaps = 39/262 (14%)
Query: 551 REYAPLVDEVWKDPAIQETYKRKDELHFLPDVAEYFLSRAVEVSSNEYEPSDRDILYAEG 610
+E + ++ +WKD IQ + R E L D A Y+LS + + Y P+++D+L +
Sbjct: 117 KEXSDIIQRLWKDSGIQACFDRASEYQ-LNDSAGYYLSDLERLVTPGYVPTEQDVLRSR- 174
Query: 611 VTQGNGLAFIEFSLDDRSPMSETYTDNLEVQPQPLTKYQLIRVNAKGMNEGCKWVEMFED 670
+ G+ +FS D + ++ V + +E KW+ FE
Sbjct: 175 -VKTTGIIETQFSFKDLN-------------------FRXFDVGGQ-RSERKKWIHCFEG 213
Query: 671 VRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFVLILNK 730
V ++FCVALSDYD + E N+ +S +LF+ + + F DT +L LNK
Sbjct: 214 VTAIIFCVALSDYDLVLAEDEEX-------NRXHESXKLFDSICNNKWFTDTSIILFLNK 266
Query: 731 YDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFV 790
DLFEEK+ + L+ C + +++ T+ +A Y+ ++F +L ++++
Sbjct: 267 KDLFEEKIKKSPLTIC--YPEYAGSNTY-------EEAGNYIKVQFLELNXRRDVKEIYS 317
Query: 791 WQARARDRVTVDEAFKYIREVL 812
A D V F + +++
Sbjct: 318 HXTCATDTQNVKFVFDAVTDII 339
>pdb|1TND|A Chain A, The 2.2 Angstroms Crystal Structure Of Transducin-Alpha
Complexed With Gtp Gamma S
pdb|1TND|B Chain B, The 2.2 Angstroms Crystal Structure Of Transducin-Alpha
Complexed With Gtp Gamma S
pdb|1TND|C Chain C, The 2.2 Angstroms Crystal Structure Of Transducin-Alpha
Complexed With Gtp Gamma S
pdb|1TAD|A Chain A, Gtpase Mechanism Of Gproteins From The 1.7-Angstrom
Crystal Structure Of Transducin Alpha-Gdp-Alf4-
pdb|1TAD|B Chain B, Gtpase Mechanism Of Gproteins From The 1.7-Angstrom
Crystal Structure Of Transducin Alpha-Gdp-Alf4-
pdb|1TAD|C Chain C, Gtpase Mechanism Of Gproteins From The 1.7-Angstrom
Crystal Structure Of Transducin Alpha-Gdp-Alf4-
pdb|1TAG|A Chain A, Structural Determinants For Activation Of The
Alpha-Subunit Of A Heterotrimeric G Protein
Length = 324
Score = 86.7 bits (213), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 68/269 (25%), Positives = 122/269 (45%), Gaps = 39/269 (14%)
Query: 551 REYAPLVDEVWKDPAIQETYKRKDELHFLPDVAEYFLSRAVEVSSNEYEPSDRDILYAEG 610
+E + ++ +WKD IQ + R E L D A Y+LS + + Y P+++D+L +
Sbjct: 91 KEMSDIIQRLWKDSGIQACFDRASEYQ-LNDSAGYYLSDLERLVTPGYVPTEQDVLRSR- 148
Query: 611 VTQGNGLAFIEFSLDDRSPMSETYTDNLEVQPQPLTKYQLIRVNAKGMNEGCKWVEMFED 670
+ G+ +FS D + +++ V + +E KW+ FE
Sbjct: 149 -VKTTGIIETQFSFKDLN-------------------FRMFDVGGQ-RSERKKWIHCFEG 187
Query: 671 VRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFVLILNK 730
V ++F ALS YD + + + N+M +S LF + H F T VL LNK
Sbjct: 188 VTCIIFIAALSAYDMVLVEDDEV-------NRMHESLHLFNSICNHRYFATTSIVLFLNK 240
Query: 731 YDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFV 790
D+F EK+ + HLS C F D++ T+ + A Y+ ++F +L ++++
Sbjct: 241 KDVFSEKIKKAHLSIC--FPDYNGPNTYED-------AGNYIKVQFLELNMRRDVKEIYS 291
Query: 791 WQARARDRVTVDEAFKYIREVLKWDDEKE 819
A D V F + +++ ++ K+
Sbjct: 292 HMTCATDTQNVKFVFDAVTDIIIKENLKD 320
>pdb|1ZCB|A Chain A, Crystal Structure Of G Alpha 13 In Complex With Gdp
pdb|3AB3|A Chain A, Crystal Structure Of P115rhogef Rgs Domain In Complex With
G Alpha 13
pdb|3AB3|C Chain C, Crystal Structure Of P115rhogef Rgs Domain In Complex With
G Alpha 13
Length = 362
Score = 82.8 bits (203), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 74/314 (23%), Positives = 132/314 (42%), Gaps = 66/314 (21%)
Query: 442 STIFKQAKFLYGNKFTAEELQDIKLMIQSNMYRYLSILLDGRERFEEEATARMNAQGSHD 501
ST KQ + ++G F ++ + I SN+ + + +L+D RE+
Sbjct: 47 STFLKQMRIIHGQDFDQRAREEFRPTIYSNVIKGMRVLVDAREKL--------------- 91
Query: 502 QISEAGGEADPSETTQCIYSINPRLKHFSDWLLDIIATGDLDAFFPAATR---EYAPLVD 558
+ N H D L+ + A TR +Y P +
Sbjct: 92 ---------------HIPWGDNKNQLH-GDKLMAFDTRAPMAAQGMVETRVFLQYLPAIR 135
Query: 559 EVWKDPAIQETYKRKDELHFLPDVAEYFLSRAVEVSSNEYEPSDRDILYAEGVTQGNGLA 618
+W+D IQ Y R+ E L + +YFL ++ +Y PS +DIL A
Sbjct: 136 ALWEDSGIQNAYDRRREFQ-LGESVKYFLDNLDKLGVPDYIPSQQDILLA---------- 184
Query: 619 FIEFSLDDRSPMSETYTDNLEVQPQPLTKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCV 678
R P + + E++ P ++++ V + +E +W E F+ V ++F V
Sbjct: 185 --------RRPTKGIHEYDFEIKNVP---FKMVDVGGQ-RSERKRWFECFDSVTSILFLV 232
Query: 679 ALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFVLILNKYDLFEEKV 738
+ S++DQ+ + + N++ +S +FE ++ + F + +L LNK DL EEKV
Sbjct: 233 SSSEFDQVLMEDRQT-------NRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKV 285
Query: 739 NRVHLSTCEWFNDF 752
V S ++F +F
Sbjct: 286 QVV--SIKDYFLEF 297
>pdb|3CX7|A Chain A, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex
With Galpha-13 Bound To Gdp-Alf4
pdb|3CX8|A Chain A, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex
With Galpha-13 Bound To Gtp-Gamma-S
Length = 338
Score = 82.4 bits (202), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 74/314 (23%), Positives = 132/314 (42%), Gaps = 66/314 (21%)
Query: 442 STIFKQAKFLYGNKFTAEELQDIKLMIQSNMYRYLSILLDGRERFEEEATARMNAQGSHD 501
ST KQ + ++G F ++ + I SN+ + + +L+D RE+
Sbjct: 23 STFLKQMRIIHGQDFDQRAREEFRPTIYSNVIKGMRVLVDAREKL--------------- 67
Query: 502 QISEAGGEADPSETTQCIYSINPRLKHFSDWLLDIIATGDLDAFFPAATR---EYAPLVD 558
+ N H D L+ + A TR +Y P +
Sbjct: 68 ---------------HIPWGDNKNQLH-GDKLMAFDTRAPMAAQGMVETRVFLQYLPAIR 111
Query: 559 EVWKDPAIQETYKRKDELHFLPDVAEYFLSRAVEVSSNEYEPSDRDILYAEGVTQGNGLA 618
+W+D IQ Y R+ E L + +YFL ++ +Y PS +DIL A
Sbjct: 112 ALWEDSGIQNAYDRRREFQ-LGESVKYFLDNLDKLGVPDYIPSQQDILLA---------- 160
Query: 619 FIEFSLDDRSPMSETYTDNLEVQPQPLTKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCV 678
R P + + E++ P ++++ V + +E +W E F+ V ++F V
Sbjct: 161 --------RRPTKGIHEYDFEIKNVP---FKMVDVGGQ-RSERKRWFECFDSVTSILFLV 208
Query: 679 ALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFVLILNKYDLFEEKV 738
+ S++DQ+ + + N++ +S +FE ++ + F + +L LNK DL EEKV
Sbjct: 209 SSSEFDQVLMEDRQT-------NRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKV 261
Query: 739 NRVHLSTCEWFNDF 752
V S ++F +F
Sbjct: 262 QVV--SIKDYFLEF 273
>pdb|3CX6|A Chain A, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex
With Galpha-13 Bound To Gdp
Length = 338
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 75/315 (23%), Positives = 130/315 (41%), Gaps = 68/315 (21%)
Query: 442 STIFKQAKFLYGNKFTAEELQDIKLMIQSNMYRYLSILLDGRERFEEEATARMNAQGSHD 501
ST KQ + ++G F ++ + I SN+ + + +L+D RE+
Sbjct: 23 STFLKQMRIIHGQDFDQRAREEFRPTIYSNVIKGMRVLVDAREKL--------------- 67
Query: 502 QISEAGGEADPSETTQCIYSINPRLKHFSDWLLDIIATGDLDAFFPAATR---EYAPLVD 558
+ N H D L+ + A TR +Y P +
Sbjct: 68 ---------------HIPWGDNKNQLH-GDKLMAFDTRAPMAAQGMVETRVFLQYLPAIR 111
Query: 559 EVWKDPAIQETYKRKDELHFLPDVAEYFLSRAVEVSSNEYEPSDRDILYAEGVTQGNGLA 618
+W+D IQ Y R+ E L + +YFL ++ +Y PS +DIL A
Sbjct: 112 ALWEDSGIQNAYDRRREFQ-LGESVKYFLDNLDKLGVPDYIPSQQDILLA---------- 160
Query: 619 FIEFSLDDRSPMSETYTDNLEVQPQPLTKYQLIRVNAKGM-NEGCKWVEMFEDVRVVVFC 677
R P + + E++ P V+ G+ +E +W E F+ V ++F
Sbjct: 161 --------RRPTKGIHEYDFEIKNVPFKM-----VDVGGLRSERKRWFECFDSVTSILFL 207
Query: 678 VALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFVLILNKYDLFEEK 737
V+ S++DQ+ + + N++ +S +FE ++ + F + +L LNK DL EEK
Sbjct: 208 VSSSEFDQVLMEDRQT-------NRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEK 260
Query: 738 VNRVHLSTCEWFNDF 752
V V S ++F +F
Sbjct: 261 VQVV--SIKDYFLEF 273
>pdb|1ZCA|A Chain A, Crystal Structure Of G Alpha 12 In Complex With Gdp, Mg2+
And Alf4-
pdb|1ZCA|B Chain B, Crystal Structure Of G Alpha 12 In Complex With Gdp, Mg2+
And Alf4-
Length = 359
Score = 79.3 bits (194), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 96/206 (46%), Gaps = 32/206 (15%)
Query: 547 PAATREYAPLVDEVWKDPAIQETYKRKDELHFLPDVAEYFLSRAVEVSSNEYEPSDRDIL 606
PA + Y P + +W+D I+E + R+ E L + +YFL + Y PS +DIL
Sbjct: 122 PATFQLYVPALSALWRDSGIREAFSRRSEFQ-LGESVKYFLDNLDRIGQLNYFPSKQDIL 180
Query: 607 YAEGVTQGNGLAFIEFSLDDRSPMSETYTDNLEVQPQPLTKYQLIRVNAKGMNEGCKWVE 666
A T+G + ++ P ++++ V + ++ KW +
Sbjct: 181 LARKATKG------------------IVEHDFVIKKIP---FKMVDVGGQ-RSQRQKWFQ 218
Query: 667 MFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFVL 726
F+ + ++F V+ S+YDQ+ + + N++++S +FE ++ + F + +L
Sbjct: 219 CFDGITSILFMVSSSEYDQVLMEDRRT-------NRLVESMNIFETIVNNKLFFNVSIIL 271
Query: 727 ILNKYDLFEEKVNRVHLSTCEWFNDF 752
LNK DL EKV V S + F DF
Sbjct: 272 FLNKMDLLVEKVKSV--SIKKHFPDF 295
>pdb|1AZS|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase
pdb|1AZT|A Chain A, Gs-Alpha Complexed With Gtp-Gamma-S
pdb|1AZT|B Chain B, Gs-Alpha Complexed With Gtp-Gamma-S
pdb|3C14|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Ca
pdb|3C15|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Mg
pdb|3C16|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Adenosine-5'-Triphosphate And Ca
Length = 402
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 80/322 (24%), Positives = 137/322 (42%), Gaps = 61/322 (18%)
Query: 442 STIFKQAKFLYGNKFTAEELQDIKLMIQSNMYRYLSILLDGRERFEEEATARMNAQGSHD 501
STI KQ + L+ N F E ++ +SN DG E+ + + N + + +
Sbjct: 54 STIVKQMRILHVNGFNGEGGEEDPQAARSNS--------DG-EKATKVQDIKNNLKEAIE 104
Query: 502 QISEAGGEADPSETTQCIYSINPRLKHFSDWLLDIIATGDLDAFFPAATREYAPLVDEVW 561
I A P + NP + D++L ++ D D FP E+A +W
Sbjct: 105 TIVAAMSNLVPP-----VELANPENQFRVDYILSVMNVPDFD--FPPEFYEHAK---ALW 154
Query: 562 KDPAIQETYKRKDELHFLPDVAEYFLSRAVEVSSNEYEPSDRDILYAEGVTQGNGLAFIE 621
+D ++ Y+R +E + D A+YFL + + ++Y PSD+D+L +T G E
Sbjct: 155 EDEGVRACYERSNEYQLI-DCAQYFLDKIDVIKQDDYVPSDQDLLRCRVLTSG----IFE 209
Query: 622 FSLDDRSPMSETYTDNLEVQPQPLTKYQLIRVNAKGMNEGC------KWVEMFEDVRVVV 675
TK+Q+ +VN + G KW++ F DV ++
Sbjct: 210 ------------------------TKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAII 245
Query: 676 FCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFVLILNKYDLFE 735
F VA S Y+ M I ++ N++ ++ LF+ + + + +L LNK DL
Sbjct: 246 FVVASSSYN-MVIREDNQ------TNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLA 298
Query: 736 EKVNRVHLSTCEWFNDFSPVRT 757
EKV ++F +F+ T
Sbjct: 299 EKVLAGKSKIEDYFPEFARYTT 320
>pdb|1CS4|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2'-Deoxy-Adenosine 3'- Monophosphate, Pyrophosphate And
Mg
pdb|1U0H|C Chain C, Structural Basis For The Inhibition Of Mammalian Adenylyl
Cyclase By Mant-gtp
pdb|2GVD|C Chain C, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With Tnp-Atp And Mn
pdb|2GVZ|C Chain C, Crystal Structure Of Complex Of Gs- With The Catalytic
Domains Of Mammalian Adenylyl Cyclase: Complex With
Mant- Atp And Mn
pdb|3G82|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Mant-Itp And Mn
pdb|3MAA|C Chain C, Complex Of Gs-alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5-o-(l-thiophosphate) And Low Ca Concentration
Length = 394
Score = 74.3 bits (181), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 79/322 (24%), Positives = 137/322 (42%), Gaps = 61/322 (18%)
Query: 442 STIFKQAKFLYGNKFTAEELQDIKLMIQSNMYRYLSILLDGRERFEEEATARMNAQGSHD 501
STI KQ + L+ N F E ++ +SN DG E+ + + N + + +
Sbjct: 54 STIVKQMRILHVNGFNGEGGEEDPQAARSNS--------DG-EKATKVQDIKNNLKEAIE 104
Query: 502 QISEAGGEADPSETTQCIYSINPRLKHFSDWLLDIIATGDLDAFFPAATREYAPLVDEVW 561
I A P + NP + D++L ++ D D FP E+A +W
Sbjct: 105 TIVAAMSNLVPP-----VELANPENQFRVDYILSVMNVPDFD--FPPEFYEHAK---ALW 154
Query: 562 KDPAIQETYKRKDELHFLPDVAEYFLSRAVEVSSNEYEPSDRDILYAEGVTQGNGLAFIE 621
+D ++ Y+R +E + D A+YFL + + ++Y PSD+D+L +T G E
Sbjct: 155 EDEGVRACYERSNEYQLI-DCAQYFLDKIDVIKQDDYVPSDQDLLRCRVLTSG----IFE 209
Query: 622 FSLDDRSPMSETYTDNLEVQPQPLTKYQLIRVNAKGMNEGC------KWVEMFEDVRVVV 675
TK+Q+ +VN + G KW++ F DV ++
Sbjct: 210 ------------------------TKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAII 245
Query: 676 FCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFVLILNKYDLFE 735
F VA S Y+ + E + + N++ ++ LF+ + + + +L LNK DL
Sbjct: 246 FVVASSSYNM--VIREDNQT-----NRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLA 298
Query: 736 EKVNRVHLSTCEWFNDFSPVRT 757
EKV ++F +F+ T
Sbjct: 299 EKVLAGKSKIEDYFPEFARYTT 320
>pdb|1CJK|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5'-(Alpha Thio)-Triphosphate (Rp), Mg, And Mn
pdb|1CJT|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mn, And Mg
pdb|1CJU|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp And Mg
pdb|1CJV|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mg, And Zn
pdb|1TL7|C Chain C, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With 2'(3')-O-(N-
Methylanthraniloyl)-Guanosine 5'-Triphosphate And Mn
Length = 402
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/241 (25%), Positives = 107/241 (44%), Gaps = 47/241 (19%)
Query: 523 NPRLKHFSDWLLDIIATGDLDAFFPAATREYAPLVDEVWKDPAIQETYKRKDELHFLPDV 582
NP + D++L ++ D D FP E+A +W+D ++ Y+R +E + D
Sbjct: 121 NPENQFRVDYILSVMNVPDFD--FPPEFYEHAK---ALWEDEGVRACYERSNEYQLI-DC 174
Query: 583 AEYFLSRAVEVSSNEYEPSDRDILYAEGVTQGNGLAFIEFSLDDRSPMSETYTDNLEVQP 642
A+YFL + + ++Y PSD+D+L +T G E
Sbjct: 175 AQYFLDKIDVIKQDDYVPSDQDLLRCRVLTSG----IFE--------------------- 209
Query: 643 QPLTKYQLIRVNAKGMNEGC------KWVEMFEDVRVVVFCVALSDYDQMWICPESSGSG 696
TK+Q+ +VN + G KW++ F DV ++F VA S Y+ + E + +
Sbjct: 210 ---TKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNM--VIREDNQT- 263
Query: 697 TLLQNKMIQSKELFEMMIRHPCFKDTPFVLILNKYDLFEEKVNRVHLSTCEWFNDFSPVR 756
N++ ++ LF+ + + + +L LNK DL EKV ++F +F+
Sbjct: 264 ----NRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYT 319
Query: 757 T 757
T
Sbjct: 320 T 320
>pdb|1CUL|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2',5'-Dideoxy-Adenosine 3'- Triphosphate And Mg
Length = 380
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/222 (26%), Positives = 100/222 (45%), Gaps = 47/222 (21%)
Query: 523 NPRLKHFSDWLLDIIATGDLDAFFPAATREYAPLVDEVWKDPAIQETYKRKDELHFLPDV 582
NP + D++L ++ D D FP E+A +W+D ++ Y+R +E + D
Sbjct: 107 NPENQFRVDYILSVMNVPDFD--FPPEFYEHAK---ALWEDEGVRACYERSNEYQLI-DC 160
Query: 583 AEYFLSRAVEVSSNEYEPSDRDILYAEGVTQGNGLAFIEFSLDDRSPMSETYTDNLEVQP 642
A+YFL + + ++Y PSD+D+L +T G E
Sbjct: 161 AQYFLDKIDVIKQDDYVPSDQDLLRCRVLTSG----IFE--------------------- 195
Query: 643 QPLTKYQLIRVNAKGMNEGC------KWVEMFEDVRVVVFCVALSDYDQMWICPESSGSG 696
TK+Q+ +VN + G KW++ F DV ++F VA S Y+ + E + +
Sbjct: 196 ---TKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNM--VIREDNQT- 249
Query: 697 TLLQNKMIQSKELFEMMIRHPCFKDTPFVLILNKYDLFEEKV 738
N++ ++ LF+ + + + +L LNK DL EKV
Sbjct: 250 ----NRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKV 287
>pdb|3SN6|A Chain A, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 380
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/222 (26%), Positives = 100/222 (45%), Gaps = 47/222 (21%)
Query: 523 NPRLKHFSDWLLDIIATGDLDAFFPAATREYAPLVDEVWKDPAIQETYKRKDELHFLPDV 582
NP + D++L ++ D D FP E+A +W+D ++ Y+R +E + D
Sbjct: 107 NPENQFRVDYILSVMNVPDFD--FPPEFYEHAK---ALWEDEGVRACYERSNEYQLI-DC 160
Query: 583 AEYFLSRAVEVSSNEYEPSDRDILYAEGVTQGNGLAFIEFSLDDRSPMSETYTDNLEVQP 642
A+YFL + + ++Y PSD+D+L +T G E
Sbjct: 161 AQYFLDKIDVIKQDDYVPSDQDLLRCRVLTSG----IFE--------------------- 195
Query: 643 QPLTKYQLIRVNAKGMNEGC------KWVEMFEDVRVVVFCVALSDYDQMWICPESSGSG 696
TK+Q+ +VN + G KW++ F DV ++F VA S Y+ + E + +
Sbjct: 196 ---TKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNM--VIREDNQT- 249
Query: 697 TLLQNKMIQSKELFEMMIRHPCFKDTPFVLILNKYDLFEEKV 738
N++ ++ LF+ + + + +L LNK DL EKV
Sbjct: 250 ----NRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKV 287
>pdb|4FID|A Chain A, Crystal Structure Of A Heterotrimeric G-Protein Subunit
From Entamoeba Histolytica, Ehg-Alpha-1
pdb|4FID|B Chain B, Crystal Structure Of A Heterotrimeric G-Protein Subunit
From Entamoeba Histolytica, Ehg-Alpha-1
Length = 340
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 72/304 (23%), Positives = 121/304 (39%), Gaps = 70/304 (23%)
Query: 442 STIFKQAKFLYGNKFTAEELQDIKLMIQSNMYRYLSILLDGRERFEEEATARMNAQGSHD 501
STI KQ K L+G F +E K I SN+ L+ E +A +N +
Sbjct: 19 STIAKQLKILFGGGFPEQERATHKSSICSNVVTCXRTLI--------EQSAILNHPXKYQ 70
Query: 502 QISEAGGEADPSETTQCIYSINPRLKHFSDWLLDIIATGDLDAFFPAATREYAPLVDEVW 561
S+ DP +P L GD++A +W
Sbjct: 71 PKSKEFTTEDP-----VTLPFSPEL------------VGDVEA---------------LW 98
Query: 562 KDPAIQETYKRKDELHFLPDVAEYFLSRAVEVSSNEYEPSDRDILYAEGVTQGNGLAFIE 621
D IQ TY+ + LPD A+Y ++ +Y P++ D+++ T+ G+ +
Sbjct: 99 ADEGIQATYEESAKFQ-LPDCAKYLFENVKRIAXEDYVPTEEDLIHNR--TKTTGIHEYD 155
Query: 622 FSLDDRSPMSETYTDNLEVQPQPLTKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALS 681
F + D + LI V + +E WV F DV +F +L+
Sbjct: 156 FVVKD-------------------IPFHLIDVGGQ-RSERKXWVSFFSDVDCAIFVTSLA 195
Query: 682 DYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFVLILNKYDLFEEKVNRV 741
+YD ++ +++ +S +F+ + + K ++ LNK DLFEEK+ +V
Sbjct: 196 EYDXKLYEDGNT-------SRLTESIAVFKDIXTNEFLKGAVKLIFLNKXDLFEEKLTKV 248
Query: 742 HLST 745
L+T
Sbjct: 249 PLNT 252
>pdb|3PRX|A Chain A, Structure Of Complement C5 In Complex With Cvf And Ssl7
pdb|3PRX|C Chain C, Structure Of Complement C5 In Complex With Cvf And Ssl7
pdb|3PVM|A Chain A, Structure Of Complement C5 In Complex With Cvf
pdb|3PVM|C Chain C, Structure Of Complement C5 In Complex With Cvf
Length = 1676
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 8/72 (11%)
Query: 552 EYAPLVDEVWKDPAIQETYKRKDELHFLPDVAEYFLSRAVEVSSNEYEPSDRDILYAEGV 611
EY+ LV ++ I +YK K LH + FL R VEV N+ D++ + G
Sbjct: 1299 EYSLLVKQLRLSMDIDVSYKHKGALHNYKMTDKNFLGRPVEVLLND------DLIVSTGF 1352
Query: 612 TQGNGLAFIEFS 623
G+GLA + +
Sbjct: 1353 --GSGLATVHVT 1362
>pdb|3CU7|A Chain A, Human Complement Component 5
pdb|3CU7|B Chain B, Human Complement Component 5
pdb|3KLS|A Chain A, Structure Of Complement C5 In Complex With Ssl7
pdb|3KLS|B Chain B, Structure Of Complement C5 In Complex With Ssl7
pdb|3KM9|A Chain A, Structure Of Complement C5 In Complex With The C-Terminal
Beta-Grasp Domain Of Ssl7
pdb|3KM9|B Chain B, Structure Of Complement C5 In Complex With The C-Terminal
Beta-Grasp Domain Of Ssl7
pdb|4E0S|A Chain A, Crystal Structure Of C5b-6
Length = 1676
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 8/72 (11%)
Query: 552 EYAPLVDEVWKDPAIQETYKRKDELHFLPDVAEYFLSRAVEVSSNEYEPSDRDILYAEGV 611
EY+ LV ++ I +YK K LH + FL R VEV N+ D++ + G
Sbjct: 1299 EYSLLVKQLRLSMDIDVSYKHKGALHNYKMTDKNFLGRPVEVLLND------DLIVSTGF 1352
Query: 612 TQGNGLAFIEFS 623
G+GLA + +
Sbjct: 1353 --GSGLATVHVT 1362
>pdb|4A5W|A Chain A, Crystal Structure Of C5b6
Length = 1580
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 8/72 (11%)
Query: 552 EYAPLVDEVWKDPAIQETYKRKDELHFLPDVAEYFLSRAVEVSSNEYEPSDRDILYAEGV 611
EY+ LV ++ I +YK K LH + FL R VEV N+ D++ + G
Sbjct: 1203 EYSLLVKQLRLSMDIDVSYKHKGALHNYKMTDKNFLGRPVEVLLND------DLIVSTGF 1256
Query: 612 TQGNGLAFIEFS 623
G+GLA + +
Sbjct: 1257 --GSGLATVHVT 1266
>pdb|3OPN|A Chain A, The Crystal Structure Of A Putative Hemolysin From
Lactococcus Lactis
Length = 232
Score = 30.4 bits (67), Expect = 4.0, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 777 KDLYASLTGRKLFVWQARARDRVTVDEAFKYIREVLKWDDEKEDNYYGGAEDSFYSTDMS 836
K +YA G W+ R+ +RV V E F + VL D E+ + + SF S D+
Sbjct: 61 KLVYALDVGTNQLAWKIRSDERVVVXEQFNFRNAVLA-DFEQGRPSFTSIDVSFISLDLI 119
Query: 837 SSPF 840
P
Sbjct: 120 LPPL 123
>pdb|2ABK|A Chain A, Refinement Of The Native Structure Of Endonuclease Iii To
A Resolution Of 1.85 Angstrom
Length = 211
Score = 29.3 bits (64), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 21/40 (52%)
Query: 333 NTQVFINGREITKLERRVLKLANVQCPRDTHFWVYDDGRY 372
N F G+ + ++E ++LK+ + D H W+ GRY
Sbjct: 146 NRTQFAPGKNVEQVEEKLLKVVPAEFKVDCHHWLILHGRY 185
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.134 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,567,365
Number of Sequences: 62578
Number of extensions: 1064228
Number of successful extensions: 2426
Number of sequences better than 100.0: 60
Number of HSP's better than 100.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 2264
Number of HSP's gapped (non-prelim): 67
length of query: 844
length of database: 14,973,337
effective HSP length: 107
effective length of query: 737
effective length of database: 8,277,491
effective search space: 6100510867
effective search space used: 6100510867
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)