Query 042025
Match_columns 844
No_of_seqs 302 out of 1783
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 13:13:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042025.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042025hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0082 G-protein alpha subuni 100.0 4.9E-88 1.1E-92 732.3 28.4 340 408-822 8-353 (354)
2 KOG0085 G protein subunit Galp 100.0 4.2E-80 9.2E-85 630.5 10.7 348 392-822 6-358 (359)
3 smart00275 G_alpha G protein a 100.0 2.9E-74 6.3E-79 628.2 27.3 333 415-820 3-341 (342)
4 cd00066 G-alpha G protein alph 100.0 5.6E-74 1.2E-78 619.7 27.6 317 429-819 1-317 (317)
5 PF00503 G-alpha: G-protein al 100.0 1.2E-72 2.6E-77 622.9 24.0 337 415-812 40-389 (389)
6 KOG0099 G protein subunit Galp 100.0 3.1E-73 6.8E-78 587.7 16.7 350 406-821 13-377 (379)
7 KOG0071 GTP-binding ADP-ribosy 99.8 1E-19 2.2E-24 175.8 10.7 118 646-813 61-178 (180)
8 KOG0070 GTP-binding ADP-ribosy 99.8 9E-19 1.9E-23 175.8 13.6 120 646-815 61-180 (181)
9 PF00025 Arf: ADP-ribosylation 99.7 1.4E-16 2.9E-21 158.3 16.0 117 646-812 58-175 (175)
10 KOG0072 GTP-binding ADP-ribosy 99.6 2.3E-15 4.9E-20 146.5 11.9 122 644-815 60-181 (182)
11 KOG0073 GTP-binding ADP-ribosy 99.6 9.6E-15 2.1E-19 144.7 12.0 120 646-814 60-179 (185)
12 PLN00223 ADP-ribosylation fact 99.5 2E-13 4.4E-18 136.2 12.1 120 646-815 61-180 (181)
13 KOG0074 GTP-binding ADP-ribosy 99.4 1.5E-13 3.2E-18 133.6 6.7 119 645-813 61-179 (185)
14 smart00177 ARF ARF-like small 99.4 1.6E-12 3.6E-17 128.4 12.4 118 646-813 57-174 (175)
15 KOG0075 GTP-binding ADP-ribosy 99.4 2.9E-12 6.2E-17 125.5 11.0 119 646-814 65-183 (186)
16 cd04161 Arl2l1_Arl13_like Arl2 99.4 2.2E-12 4.9E-17 126.3 10.2 116 646-810 43-166 (167)
17 cd04149 Arf6 Arf6 subfamily. 99.3 5E-12 1.1E-16 124.3 11.2 115 646-810 53-167 (168)
18 PTZ00133 ADP-ribosylation fact 99.3 8.9E-12 1.9E-16 124.4 11.5 120 646-815 61-180 (182)
19 cd04150 Arf1_5_like Arf1-Arf5- 99.3 8E-12 1.7E-16 121.5 10.5 115 646-810 44-158 (159)
20 cd04158 ARD1 ARD1 subfamily. 99.3 2.2E-11 4.7E-16 119.2 13.4 120 646-814 43-162 (169)
21 KOG0076 GTP-binding ADP-ribosy 99.3 2.4E-12 5.2E-17 128.9 5.8 121 646-815 69-189 (197)
22 smart00178 SAR Sar1p-like memb 99.2 2.4E-11 5.2E-16 121.2 9.9 117 646-811 61-183 (184)
23 cd04160 Arfrp1 Arfrp1 subfamil 99.2 1.5E-10 3.2E-15 111.5 10.7 117 646-810 50-166 (167)
24 cd04157 Arl6 Arl6 subfamily. 99.2 2.8E-10 6E-15 108.6 11.9 115 646-810 45-161 (162)
25 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.2 3.6E-10 7.9E-15 112.5 13.0 122 645-815 51-172 (183)
26 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.1 2.2E-10 4.7E-15 112.9 10.6 115 646-810 59-173 (174)
27 cd00879 Sar1 Sar1 subfamily. 99.1 4.6E-10 1E-14 111.1 11.6 121 646-811 63-189 (190)
28 cd04156 ARLTS1 ARLTS1 subfamil 99.1 9.9E-10 2.1E-14 105.0 11.3 115 646-809 44-158 (160)
29 cd04151 Arl1 Arl1 subfamily. 99.1 7.6E-10 1.6E-14 106.4 10.2 115 646-810 43-157 (158)
30 cd04120 Rab12 Rab12 subfamily. 99.0 1.1E-09 2.4E-14 112.3 11.0 117 646-815 49-165 (202)
31 cd04154 Arl2 Arl2 subfamily. 99.0 1.4E-09 3E-14 106.6 10.6 115 646-810 58-172 (173)
32 cd04162 Arl9_Arfrp2_like Arl9/ 99.0 2.6E-09 5.7E-14 104.6 11.6 113 646-809 44-162 (164)
33 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.0 6.6E-09 1.4E-13 102.7 13.2 121 646-819 50-170 (172)
34 cd04175 Rap1 Rap1 subgroup. T 99.0 6.6E-09 1.4E-13 100.2 12.5 115 646-813 49-163 (164)
35 PTZ00099 rab6; Provisional 99.0 8.3E-09 1.8E-13 103.5 13.4 115 646-814 29-143 (176)
36 cd00878 Arf_Arl Arf (ADP-ribos 98.9 1.9E-08 4.1E-13 96.2 12.3 115 646-810 43-157 (158)
37 cd04121 Rab40 Rab40 subfamily. 98.9 1.8E-08 4E-13 102.2 12.8 115 646-815 55-169 (189)
38 cd01875 RhoG RhoG subfamily. 98.9 1.8E-08 4E-13 101.3 12.6 129 646-815 51-179 (191)
39 cd04155 Arl3 Arl3 subfamily. 98.9 1.8E-08 3.9E-13 97.8 11.4 115 646-810 58-172 (173)
40 cd04136 Rap_like Rap-like subf 98.8 1.8E-08 3.8E-13 96.3 10.9 114 646-812 49-162 (163)
41 smart00176 RAN Ran (Ras-relate 98.8 9E-09 1.9E-13 105.5 9.0 114 645-815 43-156 (200)
42 cd04159 Arl10_like Arl10-like 98.8 2.5E-08 5.4E-13 93.3 11.1 115 646-810 44-158 (159)
43 KOG0077 Vesicle coat complex C 98.8 2.8E-09 6E-14 106.6 4.4 130 645-812 63-192 (193)
44 cd04176 Rap2 Rap2 subgroup. T 98.8 3.6E-08 7.9E-13 94.7 11.3 114 646-812 49-162 (163)
45 cd01874 Cdc42 Cdc42 subfamily. 98.8 6.5E-08 1.4E-12 96.1 13.3 123 646-810 49-172 (175)
46 cd04122 Rab14 Rab14 subfamily. 98.8 6.2E-08 1.3E-12 94.0 12.9 114 646-813 51-164 (166)
47 cd04107 Rab32_Rab38 Rab38/Rab3 98.8 5.4E-08 1.2E-12 98.2 12.0 118 646-815 50-170 (201)
48 cd04143 Rhes_like Rhes_like su 98.8 6E-08 1.3E-12 102.6 12.8 123 646-820 48-178 (247)
49 cd04127 Rab27A Rab27a subfamil 98.8 4.7E-08 1E-12 95.7 10.7 116 646-814 63-178 (180)
50 PTZ00369 Ras-like protein; Pro 98.7 1.1E-07 2.5E-12 95.0 13.4 117 646-815 53-169 (189)
51 cd04138 H_N_K_Ras_like H-Ras/N 98.7 9.1E-08 2E-12 90.7 12.0 113 646-812 49-161 (162)
52 cd04144 Ras2 Ras2 subfamily. 98.7 7.6E-08 1.6E-12 96.4 11.9 121 646-817 47-167 (190)
53 cd04145 M_R_Ras_like M-Ras/R-R 98.7 9.3E-08 2E-12 91.4 11.9 114 646-812 50-163 (164)
54 cd01871 Rac1_like Rac1-like su 98.7 1.2E-07 2.5E-12 94.2 12.9 125 646-811 49-173 (174)
55 cd04133 Rop_like Rop subfamily 98.7 1.6E-07 3.5E-12 94.2 13.8 123 646-812 49-172 (176)
56 cd04128 Spg1 Spg1p. Spg1p (se 98.7 1.4E-07 3E-12 94.7 12.0 119 646-814 49-167 (182)
57 PLN03071 GTP-binding nuclear p 98.7 1.6E-07 3.5E-12 97.0 12.8 114 646-816 62-175 (219)
58 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 98.7 2.3E-07 5.1E-12 89.6 12.6 114 646-813 51-164 (166)
59 cd01865 Rab3 Rab3 subfamily. 98.7 1.4E-07 3E-12 91.6 10.8 114 646-813 50-163 (165)
60 cd01867 Rab8_Rab10_Rab13_like 98.7 2.5E-07 5.5E-12 90.0 12.4 115 646-814 52-166 (167)
61 smart00173 RAS Ras subfamily o 98.7 2.4E-07 5.2E-12 89.0 12.1 115 646-813 48-162 (164)
62 cd04110 Rab35 Rab35 subfamily. 98.7 3E-07 6.6E-12 92.9 13.3 117 646-817 55-171 (199)
63 cd04117 Rab15 Rab15 subfamily. 98.7 3E-07 6.5E-12 89.4 12.7 111 646-810 49-159 (161)
64 cd04126 Rab20 Rab20 subfamily. 98.7 1.7E-07 3.8E-12 97.7 11.7 142 646-816 44-193 (220)
65 cd04132 Rho4_like Rho4-like su 98.6 1.9E-07 4.1E-12 92.3 11.3 125 646-819 49-173 (187)
66 cd04123 Rab21 Rab21 subfamily. 98.6 1.7E-07 3.8E-12 88.8 10.4 113 646-812 49-161 (162)
67 cd04118 Rab24 Rab24 subfamily. 98.6 4.5E-07 9.8E-12 90.2 13.6 120 646-816 50-169 (193)
68 cd04130 Wrch_1 Wrch-1 subfamil 98.6 5E-07 1.1E-11 88.6 13.5 121 646-808 48-169 (173)
69 cd04109 Rab28 Rab28 subfamily. 98.6 3.2E-07 7E-12 94.0 12.5 118 646-816 50-169 (215)
70 cd04111 Rab39 Rab39 subfamily. 98.6 4.6E-07 9.9E-12 93.1 13.6 119 646-817 52-170 (211)
71 cd04147 Ras_dva Ras-dva subfam 98.6 2.1E-07 4.5E-12 93.9 10.8 117 646-813 47-163 (198)
72 cd04124 RabL2 RabL2 subfamily. 98.6 4.4E-07 9.4E-12 88.1 12.4 112 645-814 48-159 (161)
73 cd01866 Rab2 Rab2 subfamily. 98.6 2.7E-07 5.8E-12 90.1 10.9 115 646-814 53-167 (168)
74 cd04134 Rho3 Rho3 subfamily. 98.6 4.1E-07 8.9E-12 91.2 12.3 129 646-816 48-177 (189)
75 cd00877 Ran Ran (Ras-related n 98.6 2.3E-07 4.9E-12 91.0 10.0 112 646-814 49-160 (166)
76 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 98.6 4.1E-07 9E-12 95.1 12.4 130 646-816 49-179 (222)
77 cd04103 Centaurin_gamma Centau 98.6 3.6E-07 7.8E-12 89.6 11.3 110 646-810 47-156 (158)
78 cd01863 Rab18 Rab18 subfamily. 98.6 3.6E-07 7.8E-12 87.5 11.0 112 646-811 49-160 (161)
79 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 98.6 5.1E-07 1.1E-11 91.1 12.4 126 646-813 53-180 (182)
80 cd01862 Rab7 Rab7 subfamily. 98.6 4.2E-07 9.1E-12 87.6 11.2 118 646-815 49-169 (172)
81 cd04177 RSR1 RSR1 subgroup. R 98.6 7.5E-07 1.6E-11 86.8 13.0 116 646-813 49-164 (168)
82 cd01860 Rab5_related Rab5-rela 98.6 3.7E-07 8E-12 87.4 10.6 113 646-812 50-162 (163)
83 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 98.6 4.6E-07 1E-11 95.4 12.2 133 645-818 60-193 (232)
84 PLN03118 Rab family protein; P 98.6 6.6E-07 1.4E-11 91.2 12.9 117 646-815 62-179 (211)
85 cd04119 RJL RJL (RabJ-Like) su 98.6 5.9E-07 1.3E-11 85.7 11.5 118 646-813 49-167 (168)
86 cd01892 Miro2 Miro2 subfamily. 98.5 4.4E-07 9.5E-12 89.4 10.6 113 646-813 54-166 (169)
87 smart00174 RHO Rho (Ras homolo 98.5 1.1E-06 2.3E-11 85.5 13.0 126 646-813 46-172 (174)
88 cd04112 Rab26 Rab26 subfamily. 98.5 1E-06 2.3E-11 88.2 13.2 118 646-817 50-167 (191)
89 cd04116 Rab9 Rab9 subfamily. 98.5 2.8E-07 6E-12 89.4 8.8 116 646-811 54-169 (170)
90 cd04140 ARHI_like ARHI subfami 98.5 8.2E-07 1.8E-11 86.2 12.0 115 646-811 49-163 (165)
91 cd04131 Rnd Rnd subfamily. Th 98.5 9.8E-07 2.1E-11 88.4 12.8 126 646-813 49-176 (178)
92 cd04101 RabL4 RabL4 (Rab-like4 98.5 5.6E-07 1.2E-11 86.4 9.8 113 645-812 51-163 (164)
93 cd04135 Tc10 TC10 subfamily. 98.5 2.1E-06 4.5E-11 83.5 13.8 126 646-812 48-173 (174)
94 cd01868 Rab11_like Rab11-like. 98.5 1.2E-06 2.5E-11 84.5 11.6 113 646-812 52-164 (165)
95 cd04108 Rab36_Rab34 Rab34/Rab3 98.5 1.3E-06 2.8E-11 86.3 12.0 116 646-812 49-164 (170)
96 cd01864 Rab19 Rab19 subfamily. 98.5 7.5E-07 1.6E-11 86.2 9.9 113 646-811 52-164 (165)
97 PLN03108 Rab family protein; P 98.5 1.8E-06 4E-11 88.4 13.2 117 646-816 55-171 (210)
98 cd04115 Rab33B_Rab33A Rab33B/R 98.5 6.9E-07 1.5E-11 87.3 9.5 115 646-813 51-169 (170)
99 cd04113 Rab4 Rab4 subfamily. 98.5 9.1E-07 2E-11 84.9 10.1 112 646-811 49-160 (161)
100 cd00154 Rab Rab family. Rab G 98.5 9.5E-07 2.1E-11 82.4 9.9 110 646-809 49-158 (159)
101 cd04137 RheB Rheb (Ras Homolog 98.4 7.3E-07 1.6E-11 87.5 9.3 119 646-817 49-167 (180)
102 cd01861 Rab6 Rab6 subfamily. 98.4 6.1E-07 1.3E-11 85.7 8.4 113 646-812 49-161 (161)
103 cd01870 RhoA_like RhoA-like su 98.4 3.4E-06 7.3E-11 82.1 13.7 125 646-811 49-173 (175)
104 cd04139 RalA_RalB RalA/RalB su 98.4 1.8E-06 3.9E-11 82.2 11.2 115 646-813 48-162 (164)
105 cd04142 RRP22 RRP22 subfamily. 98.4 2.5E-06 5.5E-11 87.0 12.3 120 646-816 49-177 (198)
106 cd04125 RabA_like RabA-like su 98.4 2E-06 4.3E-11 85.6 11.3 120 646-819 49-168 (188)
107 cd00876 Ras Ras family. The R 98.4 1E-06 2.2E-11 83.4 8.7 114 646-812 47-160 (160)
108 smart00175 RAB Rab subfamily o 98.4 1.8E-06 3.9E-11 82.4 10.4 114 646-813 49-162 (164)
109 cd01893 Miro1 Miro1 subfamily. 98.4 2.2E-06 4.7E-11 83.5 10.7 119 646-814 47-165 (166)
110 cd04146 RERG_RasL11_like RERG/ 98.4 3.1E-06 6.7E-11 81.9 11.5 116 646-813 47-164 (165)
111 cd04106 Rab23_lke Rab23-like s 98.4 2E-06 4.4E-11 82.2 10.2 111 645-810 50-160 (162)
112 cd04114 Rab30 Rab30 subfamily. 98.4 1.5E-06 3.2E-11 83.9 9.1 113 646-812 56-168 (169)
113 PLN03110 Rab GTPase; Provision 98.3 4.3E-06 9.4E-11 86.1 12.3 116 646-815 61-176 (216)
114 PF00071 Ras: Ras family; Int 98.3 5.3E-06 1.2E-10 79.5 11.5 115 645-813 47-161 (162)
115 cd01890 LepA LepA subfamily. 98.3 4.2E-06 9E-11 81.7 10.0 110 646-812 67-176 (179)
116 cd04171 SelB SelB subfamily. 98.3 3.5E-06 7.6E-11 80.2 9.1 113 646-810 51-163 (164)
117 cd00157 Rho Rho (Ras homology) 98.3 1.5E-05 3.3E-10 76.7 13.7 123 646-810 48-170 (171)
118 cd01897 NOG NOG1 is a nucleola 98.3 1.5E-05 3.2E-10 76.9 13.2 112 646-813 47-168 (168)
119 cd01873 RhoBTB RhoBTB subfamil 98.2 8.3E-06 1.8E-10 83.3 11.5 124 645-810 65-193 (195)
120 cd01887 IF2_eIF5B IF2/eIF5B (i 98.2 6.1E-06 1.3E-10 79.2 9.9 116 646-812 50-165 (168)
121 cd00881 GTP_translation_factor 98.2 6.7E-06 1.5E-10 80.1 9.6 118 646-812 62-186 (189)
122 KOG0084 GTPase Rab1/YPT1, smal 98.2 1.3E-05 2.8E-10 82.5 11.4 123 644-819 56-178 (205)
123 cd01898 Obg Obg subfamily. Th 98.2 7.8E-06 1.7E-10 78.8 9.2 115 647-811 49-169 (170)
124 cd04148 RGK RGK subfamily. Th 98.2 1.3E-05 2.7E-10 83.2 11.1 114 646-816 50-166 (221)
125 cd00882 Ras_like_GTPase Ras-li 98.1 9.8E-06 2.1E-10 73.4 8.8 112 646-809 45-156 (157)
126 PRK12299 obgE GTPase CgtA; Rev 98.1 1.3E-05 2.7E-10 89.0 10.6 118 646-814 206-329 (335)
127 cd04105 SR_beta Signal recogni 98.1 3.3E-06 7.1E-11 86.5 4.3 74 646-736 48-124 (203)
128 PRK04213 GTP-binding protein; 98.0 1.8E-05 3.9E-10 79.4 9.0 123 647-812 53-191 (201)
129 cd01883 EF1_alpha Eukaryotic e 98.0 7.1E-06 1.5E-10 84.8 6.1 118 646-802 77-194 (219)
130 cd01888 eIF2_gamma eIF2-gamma 98.0 2.1E-05 4.5E-10 80.4 8.9 116 646-812 83-198 (203)
131 cd01891 TypA_BipA TypA (tyrosi 98.0 3.1E-05 6.8E-10 77.8 9.6 67 646-735 65-131 (194)
132 TIGR02729 Obg_CgtA Obg family 98.0 2.4E-05 5.2E-10 86.5 9.4 118 646-812 205-328 (329)
133 PTZ00132 GTP-binding nuclear p 98.0 4.9E-05 1.1E-09 77.7 10.9 113 645-814 57-169 (215)
134 cd01889 SelB_euk SelB subfamil 98.0 5.3E-05 1.1E-09 76.1 11.0 116 645-812 67-185 (192)
135 KOG0078 GTP-binding protein SE 97.9 6.8E-05 1.5E-09 78.0 11.5 121 645-819 60-180 (207)
136 PRK12296 obgE GTPase CgtA; Rev 97.9 5.8E-05 1.3E-09 87.8 12.3 124 646-815 206-342 (500)
137 KOG0094 GTPase Rab6/YPT6/Ryh1, 97.9 7.4E-05 1.6E-09 77.2 11.5 121 644-817 69-189 (221)
138 PRK09866 hypothetical protein; 97.9 9.6E-05 2.1E-09 87.6 14.0 116 646-810 230-350 (741)
139 cd04129 Rho2 Rho2 subfamily. 97.9 0.00013 2.8E-09 73.0 12.9 131 646-819 49-179 (187)
140 PF00009 GTP_EFTU: Elongation 97.9 0.00016 3.5E-09 72.6 13.4 116 646-812 70-186 (188)
141 cd01881 Obg_like The Obg-like 97.9 4.6E-05 1E-09 73.6 8.7 120 646-811 44-175 (176)
142 cd04102 RabL3 RabL3 (Rab-like3 97.9 3.7E-05 8.1E-10 79.4 8.1 75 645-737 53-145 (202)
143 KOG0092 GTPase Rab5/YPT51 and 97.8 0.0003 6.6E-09 72.5 14.1 121 645-819 53-173 (200)
144 PLN00023 GTP-binding protein; 97.8 2.3E-05 5E-10 86.8 6.2 73 646-736 83-166 (334)
145 TIGR00231 small_GTP small GTP- 97.8 9.2E-05 2E-09 68.3 9.0 111 646-809 50-160 (161)
146 TIGR03594 GTPase_EngA ribosome 97.8 0.00028 6E-09 79.6 13.6 116 646-815 220-346 (429)
147 cd01879 FeoB Ferrous iron tran 97.7 0.00019 4E-09 68.2 10.0 106 646-812 43-156 (158)
148 COG1100 GTPase SAR1 and relate 97.7 7.1E-05 1.5E-09 75.7 7.2 133 646-816 54-188 (219)
149 PRK12297 obgE GTPase CgtA; Rev 97.7 0.00013 2.7E-09 83.6 9.6 117 646-814 206-328 (424)
150 PF04670 Gtr1_RagA: Gtr1/RagA 97.6 0.00058 1.3E-08 72.5 12.7 125 646-814 48-177 (232)
151 KOG0093 GTPase Rab3, small G p 97.6 0.00025 5.3E-09 70.6 8.5 120 642-815 66-185 (193)
152 PRK15467 ethanolamine utilizat 97.6 0.0002 4.3E-09 70.5 8.0 107 650-817 41-151 (158)
153 TIGR01393 lepA GTP-binding pro 97.6 0.00017 3.6E-09 85.8 8.7 113 645-814 69-181 (595)
154 KOG0087 GTPase Rab11/YPT3, sma 97.6 0.00073 1.6E-08 70.6 11.8 121 645-819 62-182 (222)
155 cd01894 EngA1 EngA1 subfamily. 97.5 0.00049 1.1E-08 64.9 9.3 105 646-812 45-157 (157)
156 KOG0395 Ras-related GTPase [Ge 97.5 0.00091 2E-08 69.1 11.7 116 646-814 51-166 (196)
157 PRK10218 GTP-binding protein; 97.5 0.00055 1.2E-08 81.7 11.3 118 646-813 68-195 (607)
158 cd00880 Era_like Era (E. coli 97.5 0.0007 1.5E-08 62.4 9.4 111 647-812 46-163 (163)
159 PF09439 SRPRB: Signal recogni 97.4 7.7E-05 1.7E-09 76.4 3.0 74 646-736 49-127 (181)
160 PRK03003 GTP-binding protein D 97.4 0.00016 3.4E-09 83.5 5.6 107 646-814 86-200 (472)
161 TIGR00487 IF-2 translation ini 97.4 0.0011 2.4E-08 78.9 12.3 112 647-810 136-247 (587)
162 PRK05433 GTP-binding protein L 97.4 0.00095 2E-08 79.6 11.6 113 645-814 73-185 (600)
163 PRK09518 bifunctional cytidyla 97.4 0.0013 2.9E-08 79.6 13.0 115 646-814 498-622 (712)
164 KOG0086 GTPase Rab4, small G p 97.3 0.00055 1.2E-08 68.5 7.4 120 645-818 57-176 (214)
165 cd01878 HflX HflX subfamily. 97.3 0.00089 1.9E-08 67.6 9.1 107 647-812 90-204 (204)
166 TIGR01394 TypA_BipA GTP-bindin 97.3 0.00079 1.7E-08 80.2 9.9 118 646-813 64-191 (594)
167 CHL00189 infB translation init 97.3 0.00087 1.9E-08 81.5 10.2 115 646-812 295-409 (742)
168 PRK05306 infB translation init 97.3 0.0012 2.6E-08 80.8 11.3 113 646-810 337-449 (787)
169 TIGR00475 selB selenocysteine- 97.3 0.0012 2.6E-08 78.5 10.8 119 646-816 50-169 (581)
170 TIGR02528 EutP ethanolamine ut 97.3 0.00061 1.3E-08 64.3 6.9 100 649-809 38-141 (142)
171 PRK12298 obgE GTPase CgtA; Rev 97.3 0.0012 2.7E-08 74.8 10.3 119 647-813 208-333 (390)
172 COG2229 Predicted GTPase [Gene 97.3 0.0013 2.8E-08 67.6 9.2 109 646-811 68-176 (187)
173 cd04166 CysN_ATPS CysN_ATPS su 97.2 0.00092 2E-08 68.6 8.3 36 646-682 77-112 (208)
174 PRK12317 elongation factor 1-a 97.2 0.0019 4.1E-08 73.5 11.4 111 646-805 84-197 (425)
175 cd04163 Era Era subfamily. Er 97.2 0.0021 4.6E-08 60.3 9.7 109 646-811 51-167 (168)
176 PRK00093 GTP-binding protein D 97.2 0.0027 5.8E-08 72.0 12.3 114 646-814 221-345 (435)
177 PRK15494 era GTPase Era; Provi 97.2 0.0036 7.8E-08 69.6 12.9 107 646-812 100-215 (339)
178 PRK03003 GTP-binding protein D 97.2 0.004 8.6E-08 72.1 13.7 115 646-814 259-383 (472)
179 TIGR00436 era GTP-binding prot 97.2 0.0029 6.2E-08 67.7 11.6 108 646-812 48-163 (270)
180 TIGR00491 aIF-2 translation in 97.2 0.00087 1.9E-08 79.7 8.3 137 647-811 70-214 (590)
181 cd01895 EngA2 EngA2 subfamily. 97.2 0.0049 1.1E-07 58.7 11.7 112 647-811 51-173 (174)
182 PF08477 Miro: Miro-like prote 97.1 0.00032 6.9E-09 64.3 3.3 68 647-732 51-119 (119)
183 TIGR03680 eif2g_arch translati 97.1 0.001 2.3E-08 75.4 8.0 117 646-813 80-196 (406)
184 KOG0095 GTPase Rab30, small G 97.1 0.0013 2.8E-08 65.7 7.2 121 645-819 55-175 (213)
185 TIGR00483 EF-1_alpha translati 97.0 0.00094 2E-08 76.0 6.5 115 646-805 85-199 (426)
186 KOG0090 Signal recognition par 97.0 0.00063 1.4E-08 71.4 4.5 75 647-737 83-161 (238)
187 PRK00093 GTP-binding protein D 97.0 0.0015 3.3E-08 74.0 7.9 104 646-811 49-160 (435)
188 cd01855 YqeH YqeH. YqeH is an 97.0 0.0021 4.7E-08 64.6 8.1 100 661-813 25-125 (190)
189 PRK09518 bifunctional cytidyla 96.9 0.0013 2.7E-08 79.9 6.6 107 646-814 323-437 (712)
190 KOG0098 GTPase Rab2, small G p 96.9 0.0042 9E-08 64.2 9.3 119 645-817 54-172 (216)
191 cd04164 trmE TrmE (MnmE, ThdF, 96.9 0.0043 9.3E-08 58.4 8.8 99 646-812 49-156 (157)
192 KOG1673 Ras GTPases [General f 96.9 0.0088 1.9E-07 60.4 11.2 118 645-813 68-186 (205)
193 PRK00089 era GTPase Era; Revie 96.9 0.0066 1.4E-07 65.3 11.3 111 646-813 53-171 (292)
194 KOG0081 GTPase Rab27, small G 96.9 0.0054 1.2E-07 62.0 9.6 121 645-818 66-186 (219)
195 KOG0394 Ras-related GTPase [Ge 96.9 0.0071 1.5E-07 62.4 10.3 126 645-817 57-182 (210)
196 PRK05291 trmE tRNA modificatio 96.8 0.0055 1.2E-07 70.7 10.0 64 646-735 263-335 (449)
197 KOG3883 Ras family small GTPas 96.7 0.014 3E-07 58.9 10.7 143 596-819 38-181 (198)
198 PRK00454 engB GTP-binding prot 96.7 0.0046 1E-07 61.4 7.6 26 788-813 169-194 (196)
199 TIGR00437 feoB ferrous iron tr 96.7 0.0096 2.1E-07 71.1 11.3 106 646-812 41-154 (591)
200 PRK10512 selenocysteinyl-tRNA- 96.7 0.0092 2E-07 71.6 10.9 116 646-814 51-167 (614)
201 cd04168 TetM_like Tet(M)-like 96.6 0.0033 7.2E-08 66.5 6.1 140 646-812 64-234 (237)
202 PRK11058 GTPase HflX; Provisio 96.6 0.0066 1.4E-07 69.7 8.6 110 647-814 246-363 (426)
203 cd01884 EF_Tu EF-Tu subfamily. 96.5 0.014 3.1E-07 60.0 9.9 107 646-802 65-172 (195)
204 TIGR03597 GTPase_YqeH ribosome 96.5 0.0096 2.1E-07 66.8 9.0 94 665-811 58-151 (360)
205 TIGR03598 GTPase_YsxC ribosome 96.5 0.0063 1.4E-07 60.5 6.8 29 420-448 10-38 (179)
206 TIGR03594 GTPase_EngA ribosome 96.5 0.0055 1.2E-07 69.2 7.1 108 646-814 47-161 (429)
207 cd01886 EF-G Elongation factor 96.5 0.0034 7.4E-08 67.8 5.2 67 646-735 64-130 (270)
208 PRK04000 translation initiatio 96.5 0.0086 1.9E-07 68.4 8.5 114 646-813 85-201 (411)
209 TIGR03156 GTP_HflX GTP-binding 96.4 0.015 3.3E-07 65.2 10.3 105 646-811 237-350 (351)
210 TIGR00450 mnmE_trmE_thdF tRNA 96.4 0.015 3.2E-07 67.2 10.4 66 646-735 251-324 (442)
211 PRK13768 GTPase; Provisional 96.4 0.0059 1.3E-07 65.2 6.5 134 647-812 98-246 (253)
212 cd01876 YihA_EngB The YihA (En 96.3 0.013 2.7E-07 55.4 7.4 25 788-812 146-170 (170)
213 KOG0393 Ras-related small GTPa 96.3 0.028 6.1E-07 58.7 10.3 124 645-815 52-181 (198)
214 KOG0088 GTPase Rab21, small G 96.2 0.03 6.4E-07 56.8 9.8 117 646-816 62-178 (218)
215 TIGR00157 ribosome small subun 96.2 0.024 5.2E-07 60.4 9.8 88 666-809 32-119 (245)
216 KOG0091 GTPase Rab39, small G 96.2 0.031 6.8E-07 56.9 9.7 125 642-818 54-178 (213)
217 cd04169 RF3 RF3 subfamily. Pe 96.2 0.0053 1.2E-07 66.2 4.6 67 646-735 71-137 (267)
218 PRK12740 elongation factor G; 96.1 0.016 3.4E-07 69.8 8.4 69 646-737 60-128 (668)
219 cd01858 NGP_1 NGP-1. Autoanti 95.9 0.066 1.4E-06 52.4 10.6 48 668-735 6-53 (157)
220 PRK12736 elongation factor Tu; 95.9 0.037 8E-07 62.8 10.0 66 646-734 75-141 (394)
221 cd04167 Snu114p Snu114p subfam 95.9 0.0099 2.2E-07 61.1 4.9 66 646-734 71-136 (213)
222 PRK04004 translation initiatio 95.9 0.04 8.6E-07 65.9 10.4 64 648-734 73-136 (586)
223 PF02421 FeoB_N: Ferrous iron 95.8 0.061 1.3E-06 54.1 10.1 102 646-808 47-156 (156)
224 PF06858 NOG1: Nucleolar GTP-b 95.7 0.018 3.9E-07 49.1 4.9 45 671-732 14-58 (58)
225 cd04165 GTPBP1_like GTPBP1-lik 95.7 0.068 1.5E-06 56.2 10.4 68 646-736 84-153 (224)
226 KOG0097 GTPase Rab14, small G 95.7 0.035 7.6E-07 55.2 7.6 116 644-813 58-173 (215)
227 KOG0080 GTPase Rab18, small G 95.7 0.059 1.3E-06 54.9 9.1 116 645-813 59-174 (209)
228 KOG0079 GTP-binding protein H- 95.6 0.062 1.3E-06 54.1 8.8 117 645-816 56-172 (198)
229 KOG4252 GTP-binding protein [S 95.5 0.034 7.3E-07 57.4 6.8 138 646-838 69-210 (246)
230 cd01896 DRG The developmentall 95.4 0.052 1.1E-06 57.2 8.4 37 646-683 47-90 (233)
231 TIGR02034 CysN sulfate adenyly 95.3 0.037 8E-07 63.1 7.3 36 646-682 80-115 (406)
232 TIGR00485 EF-Tu translation el 95.3 0.095 2.1E-06 59.4 10.4 23 426-448 10-32 (394)
233 KOG0074 GTP-binding ADP-ribosy 95.3 0.011 2.5E-07 58.8 2.6 24 426-449 15-38 (185)
234 cd01885 EF2 EF2 (for archaea a 95.3 0.021 4.6E-07 60.2 4.7 68 646-736 73-140 (222)
235 cd01859 MJ1464 MJ1464. This f 95.3 0.039 8.4E-07 53.7 6.3 53 661-735 3-55 (156)
236 KOG0083 GTPase Rab26/Rab37, sm 95.3 0.064 1.4E-06 53.1 7.6 122 642-817 43-164 (192)
237 PRK00741 prfC peptide chain re 95.2 0.028 6.1E-07 66.4 6.1 67 646-735 79-145 (526)
238 PRK05124 cysN sulfate adenylyl 95.1 0.057 1.2E-06 63.0 7.9 39 415-455 11-52 (474)
239 TIGR00503 prfC peptide chain r 95.0 0.028 6E-07 66.4 5.3 66 646-734 80-145 (527)
240 PRK13351 elongation factor G; 95.0 0.029 6.2E-07 68.0 5.5 69 646-737 73-141 (687)
241 TIGR00484 EF-G translation elo 94.9 0.032 7E-07 67.7 5.7 67 646-735 75-141 (689)
242 PRK14845 translation initiatio 94.8 0.1 2.2E-06 66.1 9.8 128 647-811 527-671 (1049)
243 PF00025 Arf: ADP-ribosylation 94.7 0.019 4.1E-07 57.5 2.5 26 424-449 10-35 (175)
244 CHL00071 tufA elongation facto 94.6 0.17 3.7E-06 57.8 10.1 67 646-735 75-142 (409)
245 PRK05506 bifunctional sulfate 94.5 0.074 1.6E-06 64.0 7.2 36 418-455 11-49 (632)
246 PRK00098 GTPase RsgA; Reviewed 94.5 0.19 4E-06 55.2 9.7 85 669-809 79-163 (298)
247 COG1159 Era GTPase [General fu 94.5 0.26 5.6E-06 54.4 10.5 109 646-812 54-171 (298)
248 PRK12289 GTPase RsgA; Reviewed 94.3 0.17 3.7E-06 57.0 9.2 87 667-810 86-172 (352)
249 PRK13796 GTPase YqeH; Provisio 94.3 0.19 4.1E-06 56.8 9.5 87 672-811 71-157 (365)
250 cd04170 EF-G_bact Elongation f 94.3 0.056 1.2E-06 57.7 5.1 67 646-735 64-130 (268)
251 PTZ00327 eukaryotic translatio 94.1 0.18 3.8E-06 58.9 9.0 116 647-813 118-233 (460)
252 PRK12735 elongation factor Tu; 94.0 0.26 5.7E-06 56.0 9.9 25 424-448 8-32 (396)
253 KOG1489 Predicted GTP-binding 94.0 0.3 6.5E-06 54.6 9.8 114 647-810 245-364 (366)
254 PF08477 Miro: Miro-like prote 93.9 0.041 8.9E-07 50.3 2.7 20 430-449 1-20 (119)
255 PF13207 AAA_17: AAA domain; P 93.8 0.048 1E-06 50.4 3.0 24 430-453 1-24 (121)
256 PRK12739 elongation factor G; 93.7 0.068 1.5E-06 65.0 4.7 68 646-736 73-140 (691)
257 cd01892 Miro2 Miro2 subfamily. 93.6 0.051 1.1E-06 53.7 2.9 25 425-449 1-25 (169)
258 PLN03127 Elongation factor Tu; 93.6 0.61 1.3E-05 54.2 12.0 29 420-448 53-81 (447)
259 PRK08118 topology modulation p 93.6 0.046 1E-06 54.9 2.6 25 429-453 2-26 (167)
260 PRK09554 feoB ferrous iron tra 93.4 0.51 1.1E-05 58.4 11.6 106 646-812 50-167 (772)
261 PRK07261 topology modulation p 93.3 0.055 1.2E-06 54.4 2.6 21 429-449 1-21 (171)
262 PRK00049 elongation factor Tu; 93.3 0.52 1.1E-05 53.7 10.7 25 424-448 8-32 (396)
263 KOG1532 GTPase XAB1, interacts 93.2 0.19 4.2E-06 55.1 6.7 129 646-814 116-265 (366)
264 COG1160 Predicted GTPases [Gen 93.2 0.15 3.3E-06 58.9 6.2 107 646-813 51-165 (444)
265 PLN03126 Elongation factor Tu; 93.2 0.3 6.5E-06 57.3 8.8 67 646-735 144-211 (478)
266 COG0536 Obg Predicted GTPase [ 93.1 0.59 1.3E-05 52.7 10.4 121 647-816 208-336 (369)
267 cd00879 Sar1 Sar1 subfamily. 93.1 0.066 1.4E-06 53.1 2.8 24 426-449 17-40 (190)
268 COG0563 Adk Adenylate kinase a 93.1 0.06 1.3E-06 55.0 2.5 24 429-452 1-24 (178)
269 KOG0462 Elongation factor-type 93.0 0.67 1.5E-05 54.9 11.0 112 645-813 124-235 (650)
270 TIGR00231 small_GTP small GTP- 93.0 0.071 1.5E-06 49.1 2.7 22 428-449 1-22 (161)
271 cd04155 Arl3 Arl3 subfamily. 92.9 0.075 1.6E-06 51.6 2.9 24 426-449 12-35 (173)
272 cd04138 H_N_K_Ras_like H-Ras/N 92.9 0.072 1.6E-06 50.5 2.7 22 428-449 1-22 (162)
273 COG1160 Predicted GTPases [Gen 92.9 1.8 3.9E-05 50.4 14.1 118 646-816 226-354 (444)
274 cd00154 Rab Rab family. Rab G 92.8 0.073 1.6E-06 49.6 2.5 21 429-449 1-21 (159)
275 cd04113 Rab4 Rab4 subfamily. 92.8 0.073 1.6E-06 51.1 2.5 21 429-449 1-21 (161)
276 cd00157 Rho Rho (Ras homology) 92.7 0.075 1.6E-06 51.2 2.5 20 429-448 1-20 (171)
277 PTZ00141 elongation factor 1- 92.7 0.42 9.2E-06 55.4 8.9 116 646-803 85-203 (446)
278 PLN00043 elongation factor 1-a 92.6 0.59 1.3E-05 54.3 10.0 36 646-682 85-120 (447)
279 PF13555 AAA_29: P-loop contai 92.6 0.1 2.2E-06 45.1 2.9 23 431-453 26-48 (62)
280 cd01849 YlqF_related_GTPase Yl 92.5 0.94 2E-05 44.3 9.9 23 790-812 62-84 (155)
281 COG4639 Predicted kinase [Gene 92.5 0.21 4.6E-06 50.7 5.4 17 431-447 5-21 (168)
282 KOG1144 Translation initiation 92.4 0.48 1E-05 57.7 9.0 133 648-813 542-687 (1064)
283 PF13671 AAA_33: AAA domain; P 92.3 0.099 2.1E-06 49.5 2.7 30 431-460 2-32 (143)
284 KOG1490 GTP-binding protein CR 92.3 0.098 2.1E-06 61.1 3.1 47 672-735 249-295 (620)
285 PTZ00133 ADP-ribosylation fact 92.2 0.099 2.1E-06 52.5 2.7 24 426-449 15-38 (182)
286 smart00175 RAB Rab subfamily o 92.2 0.095 2.1E-06 50.0 2.5 20 429-448 1-20 (164)
287 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 92.2 0.11 2.3E-06 50.3 2.8 21 428-448 2-22 (166)
288 COG1084 Predicted GTPase [Gene 92.1 0.28 6E-06 54.9 6.2 71 645-734 214-293 (346)
289 PF01926 MMR_HSR1: 50S ribosom 92.1 0.12 2.6E-06 47.7 2.9 19 430-448 1-19 (116)
290 smart00173 RAS Ras subfamily o 92.0 0.1 2.2E-06 50.1 2.5 20 429-448 1-20 (164)
291 PF00071 Ras: Ras family; Int 91.9 0.12 2.7E-06 49.5 2.9 19 430-448 1-19 (162)
292 cd04115 Rab33B_Rab33A Rab33B/R 91.9 0.12 2.6E-06 50.6 2.8 22 427-448 1-22 (170)
293 cd04114 Rab30 Rab30 subfamily. 91.7 0.13 2.8E-06 49.6 2.9 23 426-448 5-27 (169)
294 cd04139 RalA_RalB RalA/RalB su 91.7 0.12 2.5E-06 49.2 2.5 21 429-449 1-21 (164)
295 cd04150 Arf1_5_like Arf1-Arf5- 91.7 0.12 2.5E-06 50.5 2.5 20 429-448 1-20 (159)
296 PRK06217 hypothetical protein; 91.6 0.14 3.1E-06 51.6 3.1 25 429-453 2-26 (183)
297 cd04123 Rab21 Rab21 subfamily. 91.5 0.13 2.7E-06 48.8 2.5 21 429-449 1-21 (162)
298 cd01860 Rab5_related Rab5-rela 91.4 0.14 3E-06 49.1 2.7 21 428-448 1-21 (163)
299 cd04160 Arfrp1 Arfrp1 subfamil 91.4 0.13 2.8E-06 49.6 2.5 23 430-452 1-23 (167)
300 cd01856 YlqF YlqF. Proteins o 91.3 0.97 2.1E-05 45.0 8.6 23 790-812 78-100 (171)
301 cd01861 Rab6 Rab6 subfamily. 91.3 0.14 3E-06 48.9 2.5 21 429-449 1-21 (161)
302 cd04106 Rab23_lke Rab23-like s 91.2 0.15 3.2E-06 48.8 2.6 21 429-449 1-21 (162)
303 cd04135 Tc10 TC10 subfamily. 91.1 0.15 3.2E-06 49.6 2.6 20 429-448 1-20 (174)
304 PLN00223 ADP-ribosylation fact 91.1 0.15 3.3E-06 51.2 2.7 24 426-449 15-38 (181)
305 cd04154 Arl2 Arl2 subfamily. 91.1 0.16 3.5E-06 49.9 2.8 23 427-449 13-35 (173)
306 KOG0073 GTP-binding ADP-ribosy 91.1 0.17 3.7E-06 51.7 3.0 24 425-448 13-36 (185)
307 TIGR03598 GTPase_YsxC ribosome 91.1 0.15 3.3E-06 50.7 2.7 103 647-802 65-179 (179)
308 cd04124 RabL2 RabL2 subfamily. 91.1 0.15 3.2E-06 49.6 2.5 21 429-449 1-21 (161)
309 smart00178 SAR Sar1p-like memb 91.0 0.16 3.5E-06 50.9 2.8 24 426-449 15-38 (184)
310 cd01868 Rab11_like Rab11-like. 91.0 0.17 3.7E-06 48.7 2.9 21 428-448 3-23 (165)
311 cd01865 Rab3 Rab3 subfamily. 91.0 0.16 3.5E-06 49.3 2.7 20 429-448 2-21 (165)
312 cd03274 ABC_SMC4_euk Eukaryoti 91.0 0.22 4.8E-06 51.9 3.9 24 431-454 28-51 (212)
313 cd00876 Ras Ras family. The R 91.0 0.15 3.2E-06 48.3 2.3 20 430-449 1-20 (160)
314 cd04136 Rap_like Rap-like subf 90.9 0.17 3.6E-06 48.4 2.7 21 429-449 2-22 (163)
315 COG1100 GTPase SAR1 and relate 90.9 0.17 3.7E-06 51.3 2.8 22 428-449 5-26 (219)
316 PF03029 ATP_bind_1: Conserved 90.8 0.42 9.1E-06 51.0 5.9 134 647-813 92-237 (238)
317 cd01864 Rab19 Rab19 subfamily. 90.8 0.19 4.1E-06 48.6 3.0 22 427-448 2-23 (165)
318 cd04177 RSR1 RSR1 subgroup. R 90.8 0.17 3.7E-06 49.3 2.7 21 428-448 1-21 (168)
319 cd04117 Rab15 Rab15 subfamily. 90.8 0.17 3.7E-06 49.3 2.6 20 429-448 1-20 (161)
320 cd04127 Rab27A Rab27a subfamil 90.8 0.19 4.1E-06 49.3 2.9 22 427-448 3-24 (180)
321 smart00177 ARF ARF-like small 90.7 0.17 3.8E-06 50.2 2.7 24 426-449 11-34 (175)
322 cd04141 Rit_Rin_Ric Rit/Rin/Ri 90.6 0.2 4.3E-06 49.7 2.9 22 428-449 2-23 (172)
323 cd04119 RJL RJL (RabJ-Like) su 90.6 0.19 4E-06 47.9 2.7 21 429-449 1-21 (168)
324 PF13238 AAA_18: AAA domain; P 90.5 0.21 4.5E-06 45.9 2.9 22 431-452 1-22 (129)
325 cd04153 Arl5_Arl8 Arl5/Arl8 su 90.5 0.19 4.1E-06 49.7 2.7 23 427-449 14-36 (174)
326 PF00005 ABC_tran: ABC transpo 90.5 0.21 4.6E-06 47.1 2.9 22 428-449 11-32 (137)
327 cd01895 EngA2 EngA2 subfamily. 90.4 0.2 4.3E-06 47.7 2.7 21 428-448 2-22 (174)
328 cd04116 Rab9 Rab9 subfamily. 90.4 0.21 4.5E-06 48.5 2.9 22 427-448 4-25 (170)
329 cd04112 Rab26 Rab26 subfamily. 90.3 0.18 4E-06 50.6 2.5 20 429-448 1-20 (191)
330 cd01854 YjeQ_engC YjeQ/EngC. 90.3 1.2 2.5E-05 48.7 8.8 49 667-735 75-123 (287)
331 cd04107 Rab32_Rab38 Rab38/Rab3 90.2 0.19 4.2E-06 50.9 2.5 21 429-449 1-21 (201)
332 cd04140 ARHI_like ARHI subfami 90.2 0.21 4.5E-06 48.6 2.7 20 429-448 2-21 (165)
333 PLN03108 Rab family protein; P 90.1 0.22 4.7E-06 51.3 2.9 22 427-448 5-26 (210)
334 cd04103 Centaurin_gamma Centau 90.1 0.2 4.3E-06 49.3 2.5 21 429-449 1-21 (158)
335 cd04110 Rab35 Rab35 subfamily. 90.1 0.23 4.9E-06 50.5 2.9 22 427-448 5-26 (199)
336 cd01867 Rab8_Rab10_Rab13_like 89.9 0.23 5E-06 48.4 2.7 22 428-449 3-24 (167)
337 cd04122 Rab14 Rab14 subfamily. 89.9 0.23 5E-06 48.2 2.7 21 428-448 2-22 (166)
338 cd01862 Rab7 Rab7 subfamily. 89.9 0.22 4.7E-06 48.0 2.5 20 429-448 1-20 (172)
339 PTZ00132 GTP-binding nuclear p 89.9 0.22 4.8E-06 51.0 2.7 23 426-448 7-29 (215)
340 cd04145 M_R_Ras_like M-Ras/R-R 89.8 0.24 5.2E-06 47.3 2.8 21 428-448 2-22 (164)
341 cd04149 Arf6 Arf6 subfamily. 89.8 0.23 5E-06 49.1 2.7 24 426-449 7-30 (168)
342 PRK12288 GTPase RsgA; Reviewed 89.8 1.9 4.2E-05 48.7 10.2 23 788-810 183-205 (347)
343 cd04134 Rho3 Rho3 subfamily. 89.8 0.23 4.9E-06 49.9 2.7 21 429-449 1-21 (189)
344 cd04163 Era Era subfamily. Er 89.8 0.26 5.6E-06 46.2 2.8 21 428-448 3-23 (168)
345 cd00227 CPT Chloramphenicol (C 89.8 0.52 1.1E-05 47.1 5.2 22 431-452 5-26 (175)
346 TIGR02322 phosphon_PhnN phosph 89.7 0.21 4.6E-06 49.6 2.4 23 430-452 3-25 (179)
347 PRK10078 ribose 1,5-bisphospho 89.7 0.21 4.6E-06 50.4 2.4 21 430-450 4-24 (186)
348 cd01899 Ygr210 Ygr210 subfamil 89.7 0.82 1.8E-05 51.0 7.1 37 646-682 69-111 (318)
349 cd04137 RheB Rheb (Ras Homolog 89.7 0.25 5.4E-06 48.5 2.8 21 429-449 2-22 (180)
350 cd04151 Arl1 Arl1 subfamily. 89.7 0.22 4.7E-06 48.0 2.3 20 430-449 1-20 (158)
351 cd04101 RabL4 RabL4 (Rab-like4 89.7 0.24 5.2E-06 47.6 2.6 20 429-448 1-20 (164)
352 cd01863 Rab18 Rab18 subfamily. 89.7 0.23 5E-06 47.5 2.5 20 429-448 1-20 (161)
353 cd04129 Rho2 Rho2 subfamily. 89.6 0.24 5.2E-06 49.6 2.7 21 429-449 2-22 (187)
354 TIGR00073 hypB hydrogenase acc 89.6 0.42 9E-06 49.3 4.4 26 787-812 181-206 (207)
355 cd01876 YihA_EngB The YihA (En 89.5 0.23 5E-06 46.8 2.3 20 430-449 1-20 (170)
356 KOG0096 GTPase Ran/TC4/GSP1 (n 89.5 2.1 4.5E-05 45.0 9.3 78 645-742 58-135 (216)
357 smart00382 AAA ATPases associa 89.5 0.26 5.6E-06 44.2 2.6 26 429-454 3-28 (148)
358 cd04175 Rap1 Rap1 subgroup. T 89.5 0.25 5.4E-06 47.7 2.6 21 428-448 1-21 (164)
359 cd01870 RhoA_like RhoA-like su 89.5 0.26 5.6E-06 48.0 2.7 20 429-448 2-21 (175)
360 cd04125 RabA_like RabA-like su 89.5 0.24 5.2E-06 49.4 2.5 21 429-449 1-21 (188)
361 cd01893 Miro1 Miro1 subfamily. 89.4 0.24 5.3E-06 48.2 2.5 21 429-449 1-21 (166)
362 cd04164 trmE TrmE (MnmE, ThdF, 89.4 0.26 5.6E-06 46.3 2.6 21 429-449 2-22 (157)
363 cd01874 Cdc42 Cdc42 subfamily. 89.3 0.28 6E-06 48.9 2.9 22 428-449 1-22 (175)
364 cd00877 Ran Ran (Ras-related n 89.3 0.25 5.5E-06 48.5 2.5 20 429-448 1-20 (166)
365 TIGR03596 GTPase_YlqF ribosome 89.3 2 4.3E-05 46.5 9.5 26 790-815 80-105 (276)
366 cd04118 Rab24 Rab24 subfamily. 89.2 0.25 5.5E-06 49.2 2.5 20 429-448 1-20 (193)
367 cd04158 ARD1 ARD1 subfamily. 89.2 0.24 5.3E-06 48.6 2.3 20 430-449 1-20 (169)
368 PF10662 PduV-EutP: Ethanolami 89.2 0.95 2.1E-05 45.2 6.4 100 650-810 40-143 (143)
369 cd01866 Rab2 Rab2 subfamily. 88.9 0.3 6.5E-06 47.7 2.7 21 428-448 4-24 (168)
370 cd01857 HSR1_MMR1 HSR1/MMR1. 88.9 0.63 1.4E-05 44.9 4.9 48 668-735 9-56 (141)
371 cd01852 AIG1 AIG1 (avrRpt2-ind 88.9 3 6.5E-05 42.3 10.0 73 646-736 49-131 (196)
372 cd02021 GntK Gluconate kinase 88.9 0.28 6.1E-06 47.3 2.4 21 431-451 2-22 (150)
373 cd04152 Arl4_Arl7 Arl4/Arl7 su 88.8 0.3 6.4E-06 48.9 2.6 21 428-448 3-23 (183)
374 cd04104 p47_IIGP_like p47 (47- 88.8 3.5 7.6E-05 42.1 10.5 20 429-448 2-21 (197)
375 cd04159 Arl10_like Arl10-like 88.7 0.29 6.3E-06 45.7 2.4 19 430-448 1-19 (159)
376 cd03243 ABC_MutS_homologs The 88.7 0.28 6.2E-06 50.2 2.5 25 426-450 27-51 (202)
377 PRK03839 putative kinase; Prov 88.7 0.36 7.7E-06 48.3 3.2 24 430-453 2-25 (180)
378 PF13521 AAA_28: AAA domain; P 88.7 0.26 5.7E-06 48.4 2.2 22 430-451 1-22 (163)
379 cd04156 ARLTS1 ARLTS1 subfamil 88.6 0.29 6.3E-06 46.8 2.4 20 430-449 1-20 (160)
380 cd03283 ABC_MutS-like MutS-lik 88.6 0.28 6.1E-06 50.7 2.4 20 430-449 27-46 (199)
381 PTZ00088 adenylate kinase 1; P 88.6 0.34 7.5E-06 51.5 3.1 28 426-453 4-31 (229)
382 cd04132 Rho4_like Rho4-like su 88.6 0.3 6.4E-06 48.4 2.5 20 429-448 1-20 (187)
383 PRK13949 shikimate kinase; Pro 88.6 0.3 6.6E-06 49.2 2.6 23 430-452 3-25 (169)
384 cd04176 Rap2 Rap2 subgroup. T 88.4 0.36 7.7E-06 46.4 2.8 21 428-448 1-21 (163)
385 KOG3886 GTP-binding protein [S 88.3 0.44 9.5E-06 51.3 3.6 74 646-736 53-131 (295)
386 PRK14532 adenylate kinase; Pro 88.3 0.32 6.8E-06 48.9 2.5 23 430-452 2-24 (188)
387 TIGR02528 EutP ethanolamine ut 88.2 0.34 7.4E-06 45.7 2.5 19 430-448 2-20 (142)
388 TIGR03263 guanyl_kin guanylate 88.2 0.32 6.9E-06 48.2 2.4 21 430-450 3-23 (180)
389 PTZ00369 Ras-like protein; Pro 88.2 0.36 7.8E-06 48.4 2.8 23 427-449 4-26 (189)
390 TIGR01313 therm_gnt_kin carboh 88.2 0.29 6.2E-06 48.0 2.0 22 431-452 1-22 (163)
391 TIGR01360 aden_kin_iso1 adenyl 88.1 0.33 7.1E-06 48.1 2.4 21 430-450 5-25 (188)
392 PRK00454 engB GTP-binding prot 88.1 0.35 7.7E-06 48.0 2.6 23 426-448 22-44 (196)
393 cd01428 ADK Adenylate kinase ( 87.8 0.4 8.7E-06 47.9 2.9 24 430-453 1-24 (194)
394 TIGR01359 UMP_CMP_kin_fam UMP- 87.8 0.41 9E-06 47.6 2.9 23 431-453 2-24 (183)
395 cd04157 Arl6 Arl6 subfamily. 87.8 0.35 7.6E-06 46.1 2.3 20 430-449 1-20 (162)
396 cd04161 Arl2l1_Arl13_like Arl2 87.8 0.36 7.7E-06 47.5 2.4 20 430-449 1-20 (167)
397 cd04109 Rab28 Rab28 subfamily. 87.7 0.36 7.7E-06 49.7 2.5 20 429-448 1-20 (215)
398 COG0532 InfB Translation initi 87.7 2.7 5.9E-05 49.7 9.8 122 646-819 55-176 (509)
399 cd01878 HflX HflX subfamily. 87.7 0.39 8.4E-06 48.5 2.7 21 428-448 41-61 (204)
400 cd00878 Arf_Arl Arf (ADP-ribos 87.7 0.36 7.9E-06 46.1 2.4 20 430-449 1-20 (158)
401 COG0486 ThdF Predicted GTPase 87.7 2.3 5.1E-05 49.6 9.2 67 646-736 265-339 (454)
402 cd04130 Wrch_1 Wrch-1 subfamil 87.7 0.37 8.1E-06 47.3 2.5 20 429-448 1-20 (173)
403 PRK14530 adenylate kinase; Pro 87.6 0.45 9.7E-06 49.2 3.2 24 430-453 5-28 (215)
404 COG1122 CbiO ABC-type cobalt t 87.6 0.35 7.5E-06 51.8 2.4 29 426-454 28-56 (235)
405 cd01875 RhoG RhoG subfamily. 87.6 0.43 9.4E-06 48.2 3.0 22 428-449 3-24 (191)
406 TIGR00490 aEF-2 translation el 87.6 0.79 1.7E-05 56.3 5.7 68 646-736 86-153 (720)
407 PRK05978 hypothetical protein; 87.4 0.28 6E-06 49.3 1.4 35 183-217 24-63 (148)
408 cd03272 ABC_SMC3_euk Eukaryoti 87.4 0.43 9.4E-06 49.8 3.0 26 430-455 25-50 (243)
409 PF00004 AAA: ATPase family as 87.4 0.41 8.9E-06 44.1 2.5 21 431-451 1-21 (132)
410 cd01850 CDC_Septin CDC/Septin. 87.4 1 2.3E-05 48.9 6.0 22 427-448 3-24 (276)
411 PLN03071 GTP-binding nuclear p 87.4 0.42 9.1E-06 49.7 2.8 23 426-448 11-33 (219)
412 cd00009 AAA The AAA+ (ATPases 87.4 0.48 1E-05 43.2 2.9 34 419-452 10-43 (151)
413 cd04108 Rab36_Rab34 Rab34/Rab3 87.4 0.41 8.8E-06 47.4 2.6 20 430-449 2-21 (170)
414 cd00071 GMPK Guanosine monopho 87.2 0.46 1E-05 46.2 2.8 23 431-453 2-24 (137)
415 PRK08233 hypothetical protein; 87.1 0.47 1E-05 46.7 2.9 23 429-451 4-26 (182)
416 cd01871 Rac1_like Rac1-like su 87.1 0.46 1E-05 47.3 2.8 21 429-449 2-22 (174)
417 PRK02496 adk adenylate kinase; 87.0 0.55 1.2E-05 47.1 3.3 25 429-453 2-26 (184)
418 cd03238 ABC_UvrA The excision 87.0 0.43 9.4E-06 48.7 2.6 23 426-448 19-41 (176)
419 PRK09825 idnK D-gluconate kina 86.9 0.94 2E-05 46.0 4.9 22 430-451 5-26 (176)
420 TIGR01351 adk adenylate kinase 86.9 0.48 1E-05 48.8 2.9 24 430-453 1-24 (210)
421 PRK00300 gmk guanylate kinase; 86.8 0.42 9.1E-06 48.5 2.4 24 429-452 6-29 (205)
422 cd03280 ABC_MutS2 MutS2 homolo 86.8 0.44 9.6E-06 48.8 2.6 20 430-449 30-49 (200)
423 PRK09563 rbgA GTPase YlqF; Rev 86.8 4.4 9.5E-05 44.2 10.3 26 790-815 83-108 (287)
424 cd04121 Rab40 Rab40 subfamily. 86.8 0.52 1.1E-05 48.2 3.0 23 427-449 5-27 (189)
425 cd03219 ABC_Mj1267_LivG_branch 86.8 0.44 9.6E-06 49.5 2.6 23 427-449 25-47 (236)
426 cd04111 Rab39 Rab39 subfamily. 86.7 0.47 1E-05 49.0 2.7 21 428-448 2-22 (211)
427 COG4619 ABC-type uncharacteriz 86.7 0.51 1.1E-05 49.0 2.9 26 428-453 29-54 (223)
428 TIGR01526 nadR_NMN_Atrans nico 86.6 0.64 1.4E-05 51.8 3.9 39 419-457 153-191 (325)
429 COG2262 HflX GTPases [General 86.6 1.9 4.1E-05 49.7 7.6 49 670-736 271-319 (411)
430 cd04146 RERG_RasL11_like RERG/ 86.6 0.44 9.6E-06 46.1 2.3 19 430-448 1-19 (165)
431 cd03255 ABC_MJ0796_Lo1CDE_FtsE 86.6 0.47 1E-05 48.7 2.6 24 426-449 28-51 (218)
432 PRK13695 putative NTPase; Prov 86.5 0.47 1E-05 47.3 2.5 20 429-448 1-20 (174)
433 cd03279 ABC_sbcCD SbcCD and ot 86.5 0.35 7.5E-06 50.0 1.6 25 430-454 30-55 (213)
434 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 86.5 0.53 1.1E-05 47.7 2.9 24 426-449 3-26 (182)
435 cd03292 ABC_FtsE_transporter F 86.4 0.49 1.1E-05 48.4 2.6 27 426-452 25-51 (214)
436 cd02019 NK Nucleoside/nucleoti 86.3 0.57 1.2E-05 40.3 2.6 22 431-452 2-23 (69)
437 TIGR02673 FtsE cell division A 86.3 0.49 1.1E-05 48.4 2.6 26 426-451 26-51 (214)
438 PF05729 NACHT: NACHT domain 86.3 0.49 1.1E-05 45.2 2.4 18 431-448 3-20 (166)
439 PRK14531 adenylate kinase; Pro 86.3 0.61 1.3E-05 47.1 3.2 25 429-453 3-27 (183)
440 cd03281 ABC_MSH5_euk MutS5 hom 86.2 0.57 1.2E-05 49.0 3.0 22 429-450 30-51 (213)
441 cd03226 ABC_cobalt_CbiO_domain 86.1 0.5 1.1E-05 48.2 2.6 25 427-451 25-49 (205)
442 COG1126 GlnQ ABC-type polar am 86.1 0.47 1E-05 50.7 2.3 28 426-453 26-53 (240)
443 smart00534 MUTSac ATPase domai 86.1 0.56 1.2E-05 47.6 2.9 21 431-451 2-22 (185)
444 cd03262 ABC_HisP_GlnQ_permease 86.1 0.51 1.1E-05 48.2 2.6 23 427-449 25-47 (213)
445 cd00820 PEPCK_HprK Phosphoenol 86.0 0.52 1.1E-05 44.9 2.3 22 427-448 14-35 (107)
446 PRK09435 membrane ATPase/prote 86.0 4.7 0.0001 45.5 10.2 113 645-814 148-261 (332)
447 TIGR00960 3a0501s02 Type II (G 85.9 0.53 1.1E-05 48.4 2.6 26 427-452 28-53 (216)
448 cd02023 UMPK Uridine monophosp 85.8 0.66 1.4E-05 47.1 3.2 22 431-452 2-23 (198)
449 TIGR00235 udk uridine kinase. 85.8 0.61 1.3E-05 48.0 3.0 25 428-452 6-30 (207)
450 PF13173 AAA_14: AAA domain 85.7 0.56 1.2E-05 44.6 2.4 19 431-449 5-23 (128)
451 cd03259 ABC_Carb_Solutes_like 85.6 0.55 1.2E-05 48.1 2.6 23 427-449 25-47 (213)
452 cd03264 ABC_drug_resistance_li 85.5 0.53 1.2E-05 48.1 2.4 23 430-452 27-49 (211)
453 PLN03118 Rab family protein; P 85.5 0.61 1.3E-05 47.7 2.8 22 427-448 13-34 (211)
454 cd04128 Spg1 Spg1p. Spg1p (se 85.5 0.56 1.2E-05 47.3 2.5 21 429-449 1-21 (182)
455 COG1120 FepC ABC-type cobalami 85.5 0.52 1.1E-05 51.3 2.4 20 431-450 31-50 (258)
456 PRK08099 bifunctional DNA-bind 85.5 0.6 1.3E-05 53.6 3.0 39 418-456 209-247 (399)
457 TIGR03238 dnd_assoc_3 dnd syst 85.4 0.61 1.3E-05 54.8 3.0 46 427-473 31-88 (504)
458 cd03269 ABC_putative_ATPase Th 85.3 0.58 1.3E-05 47.8 2.6 25 427-451 25-49 (210)
459 cd03218 ABC_YhbG The ABC trans 85.3 0.58 1.3E-05 48.5 2.6 23 427-449 25-47 (232)
460 cd03265 ABC_DrrA DrrA is the A 85.3 0.59 1.3E-05 48.2 2.6 23 427-449 25-47 (220)
461 cd01120 RecA-like_NTPases RecA 85.2 0.58 1.2E-05 44.2 2.3 18 431-448 2-19 (165)
462 cd03301 ABC_MalK_N The N-termi 85.2 0.57 1.2E-05 47.9 2.4 23 427-449 25-47 (213)
463 COG1121 ZnuC ABC-type Mn/Zn tr 85.2 0.55 1.2E-05 51.0 2.4 20 429-448 31-50 (254)
464 cd04144 Ras2 Ras2 subfamily. 85.2 0.59 1.3E-05 46.9 2.5 20 430-449 1-20 (190)
465 cd03266 ABC_NatA_sodium_export 85.2 0.6 1.3E-05 47.9 2.6 26 426-451 29-54 (218)
466 PF13304 AAA_21: AAA domain; P 85.2 0.27 5.8E-06 48.4 0.0 22 432-453 3-24 (303)
467 cd03234 ABCG_White The White s 85.2 0.59 1.3E-05 48.5 2.6 26 426-451 31-56 (226)
468 PRK15177 Vi polysaccharide exp 85.2 0.57 1.2E-05 48.6 2.4 24 428-451 13-36 (213)
469 PLN03110 Rab GTPase; Provision 85.1 0.67 1.4E-05 48.0 2.9 22 427-448 11-32 (216)
470 cd03214 ABC_Iron-Siderophores_ 85.1 0.62 1.3E-05 46.8 2.6 27 426-452 23-49 (180)
471 PRK00279 adk adenylate kinase; 85.1 0.71 1.5E-05 47.7 3.1 25 429-453 1-25 (215)
472 PLN02200 adenylate kinase fami 85.1 0.75 1.6E-05 48.9 3.3 30 423-452 38-67 (234)
473 TIGR03410 urea_trans_UrtE urea 85.1 0.6 1.3E-05 48.4 2.6 24 426-449 24-47 (230)
474 TIGR02211 LolD_lipo_ex lipopro 85.0 0.62 1.3E-05 47.9 2.6 24 426-449 29-52 (221)
475 TIGR02315 ABC_phnC phosphonate 85.0 0.6 1.3E-05 48.7 2.6 26 426-451 26-51 (243)
476 cd03235 ABC_Metallic_Cations A 85.0 0.61 1.3E-05 47.8 2.5 23 427-449 24-46 (213)
477 TIGR03608 L_ocin_972_ABC putat 85.0 0.62 1.4E-05 47.3 2.6 26 427-452 23-48 (206)
478 cd03247 ABCC_cytochrome_bd The 85.0 0.63 1.4E-05 46.6 2.6 24 428-451 28-51 (178)
479 TIGR01978 sufC FeS assembly AT 85.0 0.61 1.3E-05 48.6 2.6 24 426-449 24-47 (243)
480 PRK05480 uridine/cytidine kina 84.9 0.7 1.5E-05 47.4 2.9 26 427-452 5-30 (209)
481 PRK13543 cytochrome c biogenes 84.9 0.63 1.4E-05 48.0 2.6 26 427-452 36-61 (214)
482 cd04104 p47_IIGP_like p47 (47- 84.8 0.67 1.5E-05 47.3 2.7 66 646-735 52-121 (197)
483 cd04131 Rnd Rnd subfamily. Th 84.8 0.68 1.5E-05 46.6 2.7 21 429-449 2-22 (178)
484 cd03258 ABC_MetN_methionine_tr 84.8 0.61 1.3E-05 48.5 2.4 27 426-452 29-55 (233)
485 TIGR01166 cbiO cobalt transpor 84.8 0.62 1.3E-05 47.0 2.4 23 429-451 19-41 (190)
486 cd03225 ABC_cobalt_CbiO_domain 84.7 0.61 1.3E-05 47.6 2.4 23 427-449 26-48 (211)
487 cd03261 ABC_Org_Solvent_Resist 84.7 0.64 1.4E-05 48.4 2.6 24 427-450 25-48 (235)
488 cd04143 Rhes_like Rhes_like su 84.6 0.62 1.4E-05 49.8 2.5 21 429-449 1-21 (247)
489 cd03222 ABC_RNaseL_inhibitor T 84.5 0.63 1.4E-05 47.5 2.4 26 426-451 23-48 (177)
490 cd03224 ABC_TM1139_LivF_branch 84.5 0.66 1.4E-05 47.7 2.6 24 426-449 24-47 (222)
491 cd03263 ABC_subfamily_A The AB 84.5 0.64 1.4E-05 47.8 2.4 25 428-452 28-52 (220)
492 cd01897 NOG NOG1 is a nucleola 84.4 0.7 1.5E-05 44.5 2.5 19 430-448 2-20 (168)
493 PRK06762 hypothetical protein; 84.4 0.84 1.8E-05 44.8 3.1 24 430-453 4-27 (166)
494 cd03293 ABC_NrtD_SsuB_transpor 84.4 0.65 1.4E-05 47.9 2.4 23 427-449 29-51 (220)
495 PRK11701 phnK phosphonate C-P 84.4 0.67 1.5E-05 49.1 2.6 27 426-452 30-56 (258)
496 cd03229 ABC_Class3 This class 84.3 0.67 1.4E-05 46.5 2.4 23 427-449 25-47 (178)
497 COG5256 TEF1 Translation elong 84.3 3.7 8.1E-05 47.5 8.5 75 646-735 85-159 (428)
498 PRK14528 adenylate kinase; Pro 84.3 0.85 1.8E-05 46.5 3.2 25 429-453 2-26 (186)
499 cd04148 RGK RGK subfamily. Th 84.3 0.66 1.4E-05 48.3 2.4 21 429-449 1-21 (221)
500 cd03256 ABC_PhnC_transporter A 84.3 0.65 1.4E-05 48.3 2.4 26 427-452 26-51 (241)
No 1
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=100.00 E-value=4.9e-88 Score=732.29 Aligned_cols=340 Identities=34% Similarity=0.558 Sum_probs=299.9
Q ss_pred CcccccccccCchhhhhh-----cceeeEEEeeccCCChhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042025 408 GHRDEASNYTTVPNYLEQ-----KKVQKLLLLGLQGAGTSTIFKQAKFLYGNKFTAEELQDIKLMIQSNMYRYLSILLDG 482 (844)
Q Consensus 408 ~~~e~~~~S~~Id~~Le~-----k~~iKLLLLGsgeSGKSTI~KQmKiLy~~gFS~eEr~~~r~iIqsNi~~sm~~LLea 482 (844)
+.+++...++.|+++|++ ++.+||||||+||||||||+|||||||.+|||++|+..+|.+||+|++++|..|++|
T Consensus 8 e~~~~~~~~~~I~~~l~~~~~~~~~~iKlLLLGageSGKSTI~KQmkilh~~gfs~ee~~~~r~~I~~N~~~~~~~ll~a 87 (354)
T KOG0082|consen 8 EEKEQVKRSKEIDKQLKKEKKKEKKIIKLLLLGAGESGKSTIVKQMKILHGDGFSEEELLEYRPVIYSNIIQSLKALLRA 87 (354)
T ss_pred hhhhcchhhhhhhHHHHHHHHhhhhheeeeeecCCCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555678899988887 568999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhHHHHHhhccCCCCCcccccCCCCCCCCccccccccCchhhhhhHHHHhh-hhcCCCCccCcccchhHHHHHHHhc
Q 042025 483 RERFEEEATARMNAQGSHDQISEAGGEADPSETTQCIYSINPRLKHFSDWLLDI-IATGDLDAFFPAATREYAPLVDEVW 561 (844)
Q Consensus 483 ~e~feee~l~~~~~~~~~~e~s~~~~~~~~~~~~~~Iysi~p~~k~fsd~ll~i-~~~g~ld~~~P~~t~E~a~~I~~LW 561 (844)
|+.+++ ++.++. ...-+..+... ...+++ +++++|++++|.+||
T Consensus 88 ~~~~~i---------~~~~~~----------------------~~~d~~~~~~~~~~~~~~----~~~~~e~~~~i~~lW 132 (354)
T KOG0082|consen 88 METLGI---------NLDDPE----------------------RENDAQKLTLLADAAEEL----GVFSPELAEAIKELW 132 (354)
T ss_pred HHHhcC---------CCCChh----------------------hhhHHHHHHHhhhccccc----ccCCHHHHHHHHHHH
Confidence 986543 233211 01111111111 112221 456789999999999
Q ss_pred CCHHHHHHHhccccccccccchhhcccccccccCCCCCCCccceeEeeccccCCceEEEEEEecCCCCCCccccCcccCC
Q 042025 562 KDPAIQETYKRKDELHFLPDVAEYFLSRAVEVSSNEYEPSDRDILYAEGVTQGNGLAFIEFSLDDRSPMSETYTDNLEVQ 641 (844)
Q Consensus 562 ~DpaIQ~ty~Rr~Ef~~L~DsA~YFLd~l~RI~~~dY~PTd~DILraR~~TtG~GI~e~eF~~~~~~~~~~~~~~~~~~~ 641 (844)
+||+||+||+||+||+ |+|+|.|||+|++||++|+|+||++||||+|++|+| |+++.|++.+
T Consensus 133 ~d~~Iq~~~~r~~e~~-l~Dsa~Yfl~~l~rI~~~~Y~PT~~DIL~~R~~T~G--I~e~~F~~k~--------------- 194 (354)
T KOG0082|consen 133 KDPGIQACYERRREFQ-LNDSAKYFLENLDRISSPDYVPTEQDILRSRVPTTG--IVEVEFTIKG--------------- 194 (354)
T ss_pred cCHHHHHHHHcCCcCC-CCccHHHHHHhHHHhcCCCCCCCHHHHHhhccCcCC--eeEEEEEeCC---------------
Confidence 9999999999999999 999999999999999999999999999999999998 9999999985
Q ss_pred CCCCceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCC
Q 042025 642 PQPLTKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKD 721 (844)
Q Consensus 642 ~~~~~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~ 721 (844)
.+|+++||||| |++|+||+|||++|+||||||+||+|||++ .||. .+|||+||++||++|||++||.+
T Consensus 195 ----~~f~~~DvGGQ-RseRrKWihcFe~v~aviF~vslSeYdq~l--~ED~-----~~NRM~eS~~LF~sI~n~~~F~~ 262 (354)
T KOG0082|consen 195 ----LKFRMFDVGGQ-RSERKKWIHCFEDVTAVIFCVSLSEYDQVL--EEDE-----TTNRMHESLKLFESICNNKWFAN 262 (354)
T ss_pred ----CceEEEeCCCc-HHHhhhHHHhhcCCCEEEEEEehhhhhhhc--cccc-----chhHHHHHHHHHHHHhcCccccc
Confidence 58999999999 999999999999999999999999999999 6775 59999999999999999999999
Q ss_pred CcEEEEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCH
Q 042025 722 TPFVLILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTV 801 (844)
Q Consensus 722 tpiILfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I 801 (844)
++|||||||+|||+|||+++|++. |||||.|. ++ .++|.+||.++|.+++++. .|++|+|+||||||++|
T Consensus 263 tsiiLFLNK~DLFeEKi~~~~~~~--~Fpdy~G~----~~---~~~a~~yI~~kF~~l~~~~-~k~iy~h~T~AtDT~nv 332 (354)
T KOG0082|consen 263 TSIILFLNKKDLFEEKIKKVPLTD--CFPDYKGV----NT---YEEAAKYIRKKFEELNKNK-DKKIYVHFTCATDTQNV 332 (354)
T ss_pred CcEEEEeecHHHHHHHhccCchhh--hCcCCCCC----CC---hHHHHHHHHHHHHHHhccc-CCcceEEEEeeccHHHH
Confidence 999999999999999998899875 59999985 22 6789999999999999753 49999999999999999
Q ss_pred HHHHHHHHHHHhhhhhcccCC
Q 042025 802 DEAFKYIREVLKWDDEKEDNY 822 (844)
Q Consensus 802 ~evF~~V~e~Ik~~~~k~~~~ 822 (844)
+.+|++|.|+|+|.++|..|+
T Consensus 333 ~~vf~av~d~Ii~~nlk~~gl 353 (354)
T KOG0082|consen 333 QFVFDAVTDTIIQNNLKDAGL 353 (354)
T ss_pred HHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999875
No 2
>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]
Probab=100.00 E-value=4.2e-80 Score=630.50 Aligned_cols=348 Identities=27% Similarity=0.488 Sum_probs=303.8
Q ss_pred hhccccccCCCCCCCCCcccccccccCchhhhhh-----cceeeEEEeeccCCChhhHHHHHHHHhcCCCCHHHHHHHHH
Q 042025 392 FVCSLLSLPVLHGQPQGHRDEASNYTTVPNYLEQ-----KKVQKLLLLGLQGAGTSTIFKQAKFLYGNKFTAEELQDIKL 466 (844)
Q Consensus 392 ~~~~~~slp~p~~~~~~~~e~~~~S~~Id~~Le~-----k~~iKLLLLGsgeSGKSTI~KQmKiLy~~gFS~eEr~~~r~ 466 (844)
.+|+||| .+.+++++.+.+|.++|.. ++++||||||+|||||||++|||||||+.|||++++..|+.
T Consensus 6 ~~~ccls--------ee~ke~~ri~~eierql~rdkk~arrelkllllgtgesgkstfikqmriihg~gyseedrkgf~~ 77 (359)
T KOG0085|consen 6 WMCCCLS--------EEEKEAARINQEIERQLRRDKKDARRELKLLLLGTGESGKSTFIKQMRIIHGAGYSEEDRKGFTK 77 (359)
T ss_pred hhHhhCc--------HhHHHHHHHHHHHHHHHHHHhHhhhhhheeeeecCCCcchhhHHHHHHhhhcCCCChhhhccchH
Confidence 5788887 3477777788899999877 56899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHhhccCCCCCcccccCCCCCCCCccccccccCchhhhhhHHHHhhhhcCCCCccC
Q 042025 467 MIQSNMYRYLSILLDGRERFEEEATARMNAQGSHDQISEAGGEADPSETTQCIYSINPRLKHFSDWLLDIIATGDLDAFF 546 (844)
Q Consensus 467 iIqsNi~~sm~~LLea~e~feee~l~~~~~~~~~~e~s~~~~~~~~~~~~~~Iysi~p~~k~fsd~ll~i~~~g~ld~~~ 546 (844)
+||+||+.+|+.+|+||+.+.+. +.- +.+|+.+..+.+... +..
T Consensus 78 lvyqnif~amqaMIrAMetL~I~---------y~~----------------------e~nk~~A~~vrevd~----ekV- 121 (359)
T KOG0085|consen 78 LVYQNIFTAMQAMIRAMETLKIP---------YKR----------------------EENKAHASLVREVDV----EKV- 121 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHhccc---------ccc----------------------ccchhhhhHhhhcch----HHh-
Confidence 99999999999999999987532 222 233444433333211 111
Q ss_pred cccchhHHHHHHHhcCCHHHHHHHhccccccccccchhhcccccccccCCCCCCCccceeEeeccccCCceEEEEEEecC
Q 042025 547 PAATREYAPLVDEVWKDPAIQETYKRKDELHFLPDVAEYFLSRAVEVSSNEYEPSDRDILYAEGVTQGNGLAFIEFSLDD 626 (844)
Q Consensus 547 P~~t~E~a~~I~~LW~DpaIQ~ty~Rr~Ef~~L~DsA~YFLd~l~RI~~~dY~PTd~DILraR~~TtG~GI~e~eF~~~~ 626 (844)
..+...|+.+|+.||+||+||+||.||+||| |.|+|+|+|.+++||+.++|.||.||+||.|++||| |.++-|...
T Consensus 122 ttfe~~yv~aik~LW~D~GIqeCYdRRREyq-LsDSakYylsdldria~~~ylPTqQDvLRvRvPTTG--i~eypfdl~- 197 (359)
T KOG0085|consen 122 TTFEKRYVSAIKWLWRDPGIQECYDRRREYQ-LSDSAKYYLSDLDRIATPGYLPTQQDVLRVRVPTTG--IIEYPFDLQ- 197 (359)
T ss_pred hhhhHHHHHHHHHHHhCcchHHHHHHHHHhh-cchhhhHHhhhhhhhcCcccCcchhhhheeecCccc--ceecCcchh-
Confidence 1235689999999999999999999999999 999999999999999999999999999999999999 777776654
Q ss_pred CCCCCccccCcccCCCCCCceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHH
Q 042025 627 RSPMSETYTDNLEVQPQPLTKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQS 706 (844)
Q Consensus 627 ~~~~~~~~~~~~~~~~~~~~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ES 706 (844)
.+.|+++||||| +++|+||+|||++|++|+|+|+||+|||++ .|.+ ..|||+||
T Consensus 198 ------------------~iifrmvDvGGq-rserrKWIHCFEnvtsi~fLvaLSEYDQvL--~E~d-----nENRMeES 251 (359)
T KOG0085|consen 198 ------------------KIIFRMVDVGGQ-RSERRKWIHCFENVTSIIFLVALSEYDQVL--VESD-----NENRMEES 251 (359)
T ss_pred ------------------hheeeeeecCCc-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHH--HHcc-----chhhHHHH
Confidence 368999999999 999999999999999999999999999999 5554 48999999
Q ss_pred HHHHHHHHcCCCCCCCcEEEEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCC
Q 042025 707 KELFEMMIRHPCFKDTPFVLILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGR 786 (844)
Q Consensus 707 l~LFesI~n~p~f~~tpiILfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~R 786 (844)
+.||..|+..|||.++++||||||.||+++||..+.|.+ |||+|.|. .++ ++.|.+||.+.|.+++. ..++
T Consensus 252 kALFrTIi~yPWF~nssVIlFLNKkDlLEekI~ySHl~~--YFPe~~GP--~qD----a~AAreFILkm~~d~nP-d~dK 322 (359)
T KOG0085|consen 252 KALFRTIITYPWFQNSSVILFLNKKDLLEEKILYSHLAD--YFPEFDGP--KQD----AQAAREFILKMYVDMNP-DSDK 322 (359)
T ss_pred HHHHHHHhccccccCCceEEEechhhhhhhhhhHHHHHH--hCcccCCC--ccc----HHHHHHHHHHHHHhhCC-Cccc
Confidence 999999999999999999999999999999999999985 59999973 222 88999999999999974 4578
Q ss_pred cEEEEEEeecCCCCHHHHHHHHHHHHhhhhhcccCC
Q 042025 787 KLFVWQARARDRVTVDEAFKYIREVLKWDDEKEDNY 822 (844)
Q Consensus 787 klyvh~T~AtDte~I~evF~~V~e~Ik~~~~k~~~~ 822 (844)
.+|.||||||||+||+.+|.+|+++|+..++|.-++
T Consensus 323 ii~SHfTcATDT~NIRfVFaaVkDtiLq~~LkE~NL 358 (359)
T KOG0085|consen 323 IIYSHFTCATDTENIRFVFAAVKDTILQLNLKEYNL 358 (359)
T ss_pred eeeeeeeecccchhHHHHHHHHHHHHHHhhhHhhcc
Confidence 999999999999999999999999999999987543
No 3
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=100.00 E-value=2.9e-74 Score=628.24 Aligned_cols=333 Identities=30% Similarity=0.510 Sum_probs=290.9
Q ss_pred cccCchhhhhh-----cceeeEEEeeccCCChhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 042025 415 NYTTVPNYLEQ-----KKVQKLLLLGLQGAGTSTIFKQAKFLYGNKFTAEELQDIKLMIQSNMYRYLSILLDGRERFEEE 489 (844)
Q Consensus 415 ~S~~Id~~Le~-----k~~iKLLLLGsgeSGKSTI~KQmKiLy~~gFS~eEr~~~r~iIqsNi~~sm~~LLea~e~feee 489 (844)
.|+.||++|++ ++.+||||||+||||||||+||||+||++||+++|+..||.+|+.|++++|+.||++++.++++
T Consensus 3 ~~~~Id~~l~~~~~~~~~~~klLLLG~geSGKSTi~KQmril~~~gfs~~E~~~~~~~I~~Nii~~~~~ll~a~~~~~i~ 82 (342)
T smart00275 3 RNKEIEKQLEEERKKKKREVKLLLLGAGESGKSTILKQMRILHGDGFSQEERREYRPLIYSNILESMKALVDAMEELNIP 82 (342)
T ss_pred chHHHHHHHHHhHHHhhcchheeeeecCCCcchhHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 46789999988 4579999999999999999999999999999999999999999999999999999999876532
Q ss_pred HHHhhccCCCCCcccccCCCCCCCCccccccccCchhhhhhHHHHhhhh-cCCCCccCcccchhHHHHHHHhcCCHHHHH
Q 042025 490 ATARMNAQGSHDQISEAGGEADPSETTQCIYSINPRLKHFSDWLLDIIA-TGDLDAFFPAATREYAPLVDEVWKDPAIQE 568 (844)
Q Consensus 490 ~l~~~~~~~~~~e~s~~~~~~~~~~~~~~Iysi~p~~k~fsd~ll~i~~-~g~ld~~~P~~t~E~a~~I~~LW~DpaIQ~ 568 (844)
++++. ....++.+++... ....+ ..+++++++.|..||+||+||+
T Consensus 83 ---------~~~~~----------------------~~~~~~~~~~~~~~~~~~~---~~~~~e~~~~i~~LW~D~~iq~ 128 (342)
T smart00275 83 ---------FEDPE----------------------SILDIRIITEQFNKTDETE---NVLPKEIAKAIKALWKDEGIQE 128 (342)
T ss_pred ---------CCChh----------------------hHHHHHHHhcccccccccc---ccCCHHHHHHHHHHHCCHHHHH
Confidence 22211 1112222333210 01111 1246799999999999999999
Q ss_pred HHhccccccccccchhhcccccccccCCCCCCCccceeEeeccccCCceEEEEEEecCCCCCCccccCcccCCCCCCceE
Q 042025 569 TYKRKDELHFLPDVAEYFLSRAVEVSSNEYEPSDRDILYAEGVTQGNGLAFIEFSLDDRSPMSETYTDNLEVQPQPLTKY 648 (844)
Q Consensus 569 ty~Rr~Ef~~L~DsA~YFLd~l~RI~~~dY~PTd~DILraR~~TtG~GI~e~eF~~~~~~~~~~~~~~~~~~~~~~~~~~ 648 (844)
+|.+|++|+ |+|++.|||++++||++++|+||++|||++|.+|+| +.+..|.+++ ++|
T Consensus 129 ~~~~~~~~~-l~ds~~yf~~~~~ri~~~~y~Pt~~Dil~~r~~T~G--i~~~~f~~~~-------------------~~~ 186 (342)
T smart00275 129 CYRRRNEFQ-LNDSASYFLDNIDRIGDPDYVPTEQDILRSRVPTTG--IQETAFIVKK-------------------LFF 186 (342)
T ss_pred HHHhccccc-cccchhHHHHHHHHHhCCCCCCCHHHhhheeCCccc--eEEEEEEECC-------------------eEE
Confidence 999999998 999999999999999999999999999999999998 9999998874 579
Q ss_pred EEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcEEEEe
Q 042025 649 QLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFVLIL 728 (844)
Q Consensus 649 ~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpiILfL 728 (844)
++|||||| +++|+||.|||++|++||||||+|||||.+ .||+ .+|||+||+.+|++++++++|+++||||||
T Consensus 187 ~~~DvgGq-r~~R~kW~~~f~~v~~IiFvvdlSd~d~~~--~Ed~-----~~nrl~esl~~f~~l~~~~~~~~~piil~~ 258 (342)
T smart00275 187 RMFDVGGQ-RSERKKWIHCFDNVTAIIFCVALSEYDQVL--EEDE-----STNRMQESLNLFESICNSRWFANTSIILFL 258 (342)
T ss_pred EEEecCCc-hhhhhhHHHHhCCCCEEEEEEECcccccch--hccC-----cchHHHHHHHHHHHHHcCccccCCcEEEEE
Confidence 99999999 899999999999999999999999999999 6665 489999999999999999999999999999
Q ss_pred cccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHHHHHHHH
Q 042025 729 NKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVDEAFKYI 808 (844)
Q Consensus 729 NK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~evF~~V 808 (844)
||+|+|++||++.||+.| ||||.|. ++ ++.|.+||.++|+.+++...+|.+|+|+|||+|+++++.+|+.|
T Consensus 259 NK~D~~~~Kl~~~~l~~~--fp~y~g~----~~---~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v 329 (342)
T smart00275 259 NKIDLFEEKIKKVPLVDY--FPDYKGP----ND---YEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAV 329 (342)
T ss_pred ecHHhHHHHhCCCchhcc--CCCCCCC----CC---HHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHH
Confidence 999999999999999965 9999973 22 78999999999999975324689999999999999999999999
Q ss_pred HHHHhhhhhccc
Q 042025 809 REVLKWDDEKED 820 (844)
Q Consensus 809 ~e~Ik~~~~k~~ 820 (844)
+++|...+++..
T Consensus 330 ~~~I~~~~l~~~ 341 (342)
T smart00275 330 KDIILQRNLKDA 341 (342)
T ss_pred HHHHHHHHHHhc
Confidence 999999988764
No 4
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=100.00 E-value=5.6e-74 Score=619.69 Aligned_cols=317 Identities=33% Similarity=0.544 Sum_probs=281.8
Q ss_pred eeEEEeeccCCChhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhccCCCCCcccccCC
Q 042025 429 QKLLLLGLQGAGTSTIFKQAKFLYGNKFTAEELQDIKLMIQSNMYRYLSILLDGRERFEEEATARMNAQGSHDQISEAGG 508 (844)
Q Consensus 429 iKLLLLGsgeSGKSTI~KQmKiLy~~gFS~eEr~~~r~iIqsNi~~sm~~LLea~e~feee~l~~~~~~~~~~e~s~~~~ 508 (844)
+||||||+||||||||+||||+||++||+++|+..||.+|+.|++++|+.||+++++++++ +..
T Consensus 1 ~klLlLG~geSGKSTi~KQmril~~~gfs~~Er~~~~~~I~~Ni~~~~~~ll~a~~~~~i~---------~~~------- 64 (317)
T cd00066 1 VKLLLLGAGESGKSTILKQMKILHGDGFSEEELREYRPVIYSNILQSMKALLEAMERLNIP---------FGD------- 64 (317)
T ss_pred CeEEEecCCCccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC---------CCC-------
Confidence 5999999999999999999999999999999999999999999999999999999877532 111
Q ss_pred CCCCCCccccccccCchhhhhhHHHHhhhhcCCCCccCcccchhHHHHHHHhcCCHHHHHHHhccccccccccchhhccc
Q 042025 509 EADPSETTQCIYSINPRLKHFSDWLLDIIATGDLDAFFPAATREYAPLVDEVWKDPAIQETYKRKDELHFLPDVAEYFLS 588 (844)
Q Consensus 509 ~~~~~~~~~~Iysi~p~~k~fsd~ll~i~~~g~ld~~~P~~t~E~a~~I~~LW~DpaIQ~ty~Rr~Ef~~L~DsA~YFLd 588 (844)
+.+...+..++...... ..+.+++++++.|.+||+|++||++|.||++|+ |+|++.|||+
T Consensus 65 ---------------~~~~~~~~~i~~~~~~~----~~~~~~~~~~~~i~~lW~d~~iq~~~~~r~e~~-l~d~~~yf~~ 124 (317)
T cd00066 65 ---------------PENEKDAKKILSFAPEL----EEGELPPELAEAIKELWKDPGIQACYDRRNEFQ-LNDSAKYFLD 124 (317)
T ss_pred ---------------hhhHHHHHHHHhccccc----cccCCCHHHHHHHHHHhCCHHHHHHHHhccccc-cccchHHHHH
Confidence 12223344444432211 122356799999999999999999999999998 9999999999
Q ss_pred ccccccCCCCCCCccceeEeeccccCCceEEEEEEecCCCCCCccccCcccCCCCCCceEEEEEeCCCCCCCcccceecc
Q 042025 589 RAVEVSSNEYEPSDRDILYAEGVTQGNGLAFIEFSLDDRSPMSETYTDNLEVQPQPLTKYQLIRVNAKGMNEGCKWVEMF 668 (844)
Q Consensus 589 ~l~RI~~~dY~PTd~DILraR~~TtG~GI~e~eF~~~~~~~~~~~~~~~~~~~~~~~~~~~liDVGGQ~rseR~KW~~~F 668 (844)
+++||++++|+||++|||++|.+|+| +.+..|.++. .++++|||||| +++|+||.|||
T Consensus 125 ~~~ri~~~~y~Pt~~Dil~~r~~T~G--i~~~~f~~~~-------------------~~~~~~DvgGq-~~~R~kW~~~f 182 (317)
T cd00066 125 NLDRISDPDYIPTEQDILRARVKTTG--IVETKFTIKN-------------------LKFRMFDVGGQ-RSERKKWIHCF 182 (317)
T ss_pred hHHHHhCCCCCCChhHheeeecccCC--eeEEEEEecc-------------------eEEEEECCCCC-cccchhHHHHh
Confidence 99999999999999999999999998 9999998863 68999999999 89999999999
Q ss_pred CCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcEEEEecccchhhhhhhccccccccc
Q 042025 669 EDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFVLILNKYDLFEEKVNRVHLSTCEW 748 (844)
Q Consensus 669 edV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpiILfLNK~DLfeeKI~~spLs~c~~ 748 (844)
++|++||||||+|||||.+ .||+ .+|||+||+.+|++++++++|+++|+||||||+|+|++||+++||+.|
T Consensus 183 ~~v~~iifvv~lsd~d~~~--~e~~-----~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~D~f~~ki~~~~l~~~-- 253 (317)
T cd00066 183 EDVTAIIFVVALSEYDQVL--FEDE-----STNRMQESLNLFDSICNSRWFANTSIILFLNKKDLFEEKIKKSPLTDY-- 253 (317)
T ss_pred CCCCEEEEEEEchhccccc--ccCC-----cchHHHHHHHHHHHHHhCccccCCCEEEEccChHHHHHhhcCCCcccc--
Confidence 9999999999999999999 6665 489999999999999999999999999999999999999999999987
Q ss_pred cCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHHHHHHHHHHHHhhhhhcc
Q 042025 749 FNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVDEAFKYIREVLKWDDEKE 819 (844)
Q Consensus 749 FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~evF~~V~e~Ik~~~~k~ 819 (844)
||||.|.. + .++.|.+||.++|+++++. .+|.+|+|+|||+|+++|+.+|+.|+++|+++++++
T Consensus 254 fp~y~g~~---~---~~~~~~~~i~~~F~~~~~~-~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~~~l~~ 317 (317)
T cd00066 254 FPDYTGPP---N---DYEEAAKFIRKKFLDLNRN-PNKEIYPHFTCATDTENIRFVFDAVKDIILQNNLKD 317 (317)
T ss_pred CCCCCCCC---C---CHHHHHHHHHHHHHHhhcC-CCCeEEEEeccccchHHHHHHHHHHHHHHHHHHhcC
Confidence 99999741 2 2789999999999999864 479999999999999999999999999999998763
No 5
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=100.00 E-value=1.2e-72 Score=622.87 Aligned_cols=337 Identities=34% Similarity=0.560 Sum_probs=272.8
Q ss_pred cccCchhhhhh-----cceeeEEEeeccCCChhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 042025 415 NYTTVPNYLEQ-----KKVQKLLLLGLQGAGTSTIFKQAKFLYGNKFTAEELQDIKLMIQSNMYRYLSILLDGRERFEEE 489 (844)
Q Consensus 415 ~S~~Id~~Le~-----k~~iKLLLLGsgeSGKSTI~KQmKiLy~~gFS~eEr~~~r~iIqsNi~~sm~~LLea~e~feee 489 (844)
.++.|+..++. ++.+||||||+||||||||+||||++|+++|+++|+..|+.+|+.|++++|+.|+++++.++++
T Consensus 40 ~~~~~~~~l~~~~~~~~~~~kiLLLG~geSGKSTi~KQ~ril~~~~~~~~E~~~~~~~I~~Nii~~~~~i~~~~~~~~~~ 119 (389)
T PF00503_consen 40 RSDDIDRQLEKDKKRSKREIKILLLGSGESGKSTILKQMRILYGPGFSEEERESYRPIIYSNIIQSMKQILEALEELGIP 119 (389)
T ss_dssp HHHHHHHHHHHHHHHHHEEEEEEEEESTTSSHHHHHHHHHHHHST---HHHHHHTHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred hhHHHHHHHHHHHHhhhccceEEEECCCCcchhhHHHHHHHHhCCCCchhhhhcceeeEecCchhhHHHHHHHHHHcCCC
Confidence 45577777776 5689999999999999999999999999999999999999999999999999999999887644
Q ss_pred HHHhhccCCCCCcccccCCCCCCCCccccccccCchhhhhhHHHHhhhhcCCCCccCc------ccchhHHHHHHHhcCC
Q 042025 490 ATARMNAQGSHDQISEAGGEADPSETTQCIYSINPRLKHFSDWLLDIIATGDLDAFFP------AATREYAPLVDEVWKD 563 (844)
Q Consensus 490 ~l~~~~~~~~~~e~s~~~~~~~~~~~~~~Iysi~p~~k~fsd~ll~i~~~g~ld~~~P------~~t~E~a~~I~~LW~D 563 (844)
. .... . ...++........|.......+ ....+ ..+.++++.|..||+|
T Consensus 120 ~---------~~~~-------------~--~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~LW~D 174 (389)
T PF00503_consen 120 F---------SFSE-------------S--SQLNEENQEIAEKLKEILDPLD-SSEFSLASDDNKFPEELAEDIRSLWKD 174 (389)
T ss_dssp ----------SSS--------------T--T--STTHHHHHHHHHHHHCTTS-TTCTC-----HCHHHHHHHHHHHHHHS
T ss_pred c---------cccc-------------c--ccCCHHHHHHHHHHHhhhcccc-ccccccccccccCCHHHHHHHHHHHCC
Confidence 1 1000 0 0012333444455544433221 11111 2467899999999999
Q ss_pred HHHHHHHhccccccccccchhhcccccccccCCCCCCCccceeEeeccccCCceEEEEEEecCCCCCCccccCcccCCCC
Q 042025 564 PAIQETYKRKDELHFLPDVAEYFLSRAVEVSSNEYEPSDRDILYAEGVTQGNGLAFIEFSLDDRSPMSETYTDNLEVQPQ 643 (844)
Q Consensus 564 paIQ~ty~Rr~Ef~~L~DsA~YFLd~l~RI~~~dY~PTd~DILraR~~TtG~GI~e~eF~~~~~~~~~~~~~~~~~~~~~ 643 (844)
|+||++|.++++|+ |+|++.|||++++||++++|+||++||||||.+|+| |.|+.|.++.
T Consensus 175 ~~vq~~~~~~~~~~-l~d~~~YFl~~l~RI~~~~Y~PT~~DIl~~r~~T~G--i~e~~f~~~~----------------- 234 (389)
T PF00503_consen 175 PGVQECYERRNEFQ-LPDNAKYFLDNLDRIAQPDYIPTDEDILRCRVKTTG--ITEIDFNFSG----------------- 234 (389)
T ss_dssp HHHHHHHGGGGGST---TTHHHHHTTHHHHHSTTB---HHHHHHS----SS--EEEEEEEE-T-----------------
T ss_pred hhHHHHHHhhhccc-ccccHHHHhhhhhhhcCCCccCCCCCeeeecCCCCC--eeEEEEEeec-----------------
Confidence 99999999999999 999999999999999999999999999999999998 9999999831
Q ss_pred CCceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCc
Q 042025 644 PLTKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTP 723 (844)
Q Consensus 644 ~~~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tp 723 (844)
...|+|+||||| +++|+||+|||++|++||||||||+|||.+ .||. .+|||+||+.+|++||+++||+++|
T Consensus 235 -~~~~~~~DvGGq-r~eRkKW~~~F~~v~~vif~vsls~ydq~~--~ed~-----~~nrl~esl~lF~~i~~~~~~~~~~ 305 (389)
T PF00503_consen 235 -SRKFRLIDVGGQ-RSERKKWIHCFEDVTAVIFVVSLSEYDQTL--YEDP-----NTNRLHESLNLFESICNNPWFKNTP 305 (389)
T ss_dssp -TEEEEEEEETSS-GGGGGGGGGGGTTESEEEEEEEGGGGGSBE--SSST-----TSBHHHHHHHHHHHHHTSGGGTTSE
T ss_pred -ccccceecCCCC-chhhhhHHHHhccccEEEEeecccchhhhh--cccc-----hHHHHHHHHHHHHHHHhCcccccCc
Confidence 368999999999 999999999999999999999999999999 6775 4899999999999999999999999
Q ss_pred EEEEecccchhhhhhhccc-cccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCC-CcEEEEEEeecCCCCH
Q 042025 724 FVLILNKYDLFEEKVNRVH-LSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTG-RKLFVWQARARDRVTV 801 (844)
Q Consensus 724 iILfLNK~DLfeeKI~~sp-Ls~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~-Rklyvh~T~AtDte~I 801 (844)
|||||||.|+|++||++.| |+.| ||||.|..+ + .++.|.+||.++|+++...... |++|+|+|||+|++++
T Consensus 306 iil~lnK~D~f~~Kl~~~~~l~~~--fp~y~g~~~--~---~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~ 378 (389)
T PF00503_consen 306 IILFLNKIDLFEEKLKKGPKLSKY--FPDYTGDRP--N---DVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENI 378 (389)
T ss_dssp EEEEEE-HHHHHHHTTTSSCGGGT--STTGGSH-T--S---SHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHH
T ss_pred eEEeeecHHHHHHHccCCCchHhh--CCCCCCCcc--c---CHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHH
Confidence 9999999999999999998 8865 999986311 1 2789999999999999864322 9999999999999999
Q ss_pred HHHHHHHHHHH
Q 042025 802 DEAFKYIREVL 812 (844)
Q Consensus 802 ~evF~~V~e~I 812 (844)
+.+|+.|+++|
T Consensus 379 ~~v~~~v~~~i 389 (389)
T PF00503_consen 379 RKVFNAVKDII 389 (389)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHhcCcC
Confidence 99999999987
No 6
>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]
Probab=100.00 E-value=3.1e-73 Score=587.75 Aligned_cols=350 Identities=24% Similarity=0.437 Sum_probs=306.6
Q ss_pred CCCcccccccccCchhhhhhc-----ceeeEEEeeccCCChhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 042025 406 PQGHRDEASNYTTVPNYLEQK-----KVQKLLLLGLQGAGTSTIFKQAKFLYGNKFTAEELQDIKLMIQSNMYRYLSILL 480 (844)
Q Consensus 406 ~~~~~e~~~~S~~Id~~Le~k-----~~iKLLLLGsgeSGKSTI~KQmKiLy~~gFS~eEr~~~r~iIqsNi~~sm~~LL 480 (844)
....+++..+|..|..+|+.. ..+||||||+||||||||+|||||||-+||+++|+..-.+-|+.|+-++|..|+
T Consensus 13 ~~~~~~q~~~s~~i~~ql~~~k~~~~aThrlLLLGagESGKsTIvKQMRILHvnGF~~~EkreKI~dI~~Ni~eai~~iv 92 (379)
T KOG0099|consen 13 RAEEKAQREANKKIEKQLQKDKQVYRATHRLLLLGAGESGKSTIVKQMRILHVNGFNDEEKREKIQDIKNNIKEAILTIV 92 (379)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHhHHhheeccccccchhhhhhhheeeecCCChHHHHHhhHHHHHHHHHHHHHHH
Confidence 345666777888999999884 478999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhHHHHHhhccCCCCCcccccCCCCCCCCccccccccCchhhhhhHHHHhhhhcCCCCccCcccchhHHHHHHHh
Q 042025 481 DGRERFEEEATARMNAQGSHDQISEAGGEADPSETTQCIYSINPRLKHFSDWLLDIIATGDLDAFFPAATREYAPLVDEV 560 (844)
Q Consensus 481 ea~e~feee~l~~~~~~~~~~e~s~~~~~~~~~~~~~~Iysi~p~~k~fsd~ll~i~~~g~ld~~~P~~t~E~a~~I~~L 560 (844)
.+|..+..+ +.+. +|.++-.+|++++++...+. -+ .+|+.+.++.|
T Consensus 93 ~aM~~l~p~-------v~l~----------------------~~~~~~~~dYIls~~~~~~~--~~---~~Ef~dHv~~l 138 (379)
T KOG0099|consen 93 GAMSNLVPP-------VELA----------------------NPENQFRVDYILSVMNSPDF--DY---PPEFYDHVKTL 138 (379)
T ss_pred HHHhccCCC-------cccC----------------------CcccchhHHHHHhcCCCCcc--cC---CHHHHHHHHHH
Confidence 998765311 1111 34455668999998765542 24 47999999999
Q ss_pred cCCHHHHHHHhccccccccccchhhcccccccccCCCCCCCccceeEeeccccCCceEEEEEEecCCCCCCccccCcccC
Q 042025 561 WKDPAIQETYKRKDELHFLPDVAEYFLSRAVEVSSNEYEPSDRDILYAEGVTQGNGLAFIEFSLDDRSPMSETYTDNLEV 640 (844)
Q Consensus 561 W~DpaIQ~ty~Rr~Ef~~L~DsA~YFLd~l~RI~~~dY~PTd~DILraR~~TtG~GI~e~eF~~~~~~~~~~~~~~~~~~ 640 (844)
|+|.+|++||+|.+||+ |.|+|.|||+++++|.+++|+||++||||||+.|+| |.++.|.++.
T Consensus 139 W~D~Gv~acyeRSnEyq-LiDcAqYFLd~~~~i~~~~Y~Ps~qDiLrcRvlTsG--Ifet~FqVdk-------------- 201 (379)
T KOG0099|consen 139 WEDEGVRACYERSNEYQ-LIDCAQYFLDKIDVIKQADYVPSDQDILRCRVLTSG--IFETKFQVDK-------------- 201 (379)
T ss_pred hhhhhHHHHHhccCccc-hhhHHHHHHHhhheecccCCCCcHHHHHHhhhhccc--eeeEEEeccc--------------
Confidence 99999999999999999 999999999999999999999999999999999998 9999999874
Q ss_pred CCCCCceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCC
Q 042025 641 QPQPLTKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFK 720 (844)
Q Consensus 641 ~~~~~~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~ 720 (844)
.+|+|+||||| +.+|+||++||.+|+|||||++.|.||+++ .||+ .+|||+||+.||++|+||+|++
T Consensus 202 -----v~FhMfDVGGQ-RDeRrKWIQcFndvtAiifv~acSsyn~vl--rED~-----~qNRL~EaL~LFksiWnNRwL~ 268 (379)
T KOG0099|consen 202 -----VNFHMFDVGGQ-RDERRKWIQCFNDVTAIIFVVACSSYNMVL--REDN-----QQNRLQEALNLFKSIWNNRWLR 268 (379)
T ss_pred -----cceeeeccCCc-hhhhhhHHHHhcCccEEEEEEeccchhhhh--hcCC-----chhHHHHHHHHHHHHHhhhHHh
Confidence 57999999999 999999999999999999999999999999 7887 5999999999999999999999
Q ss_pred CCcEEEEecccchhhhhhhc--cccccccccCCCCCCcCCC------CChhhHHHHHHHHHHHHHhhhccCC--CCcEEE
Q 042025 721 DTPFVLILNKYDLFEEKVNR--VHLSTCEWFNDFSPVRTHH------NNQSLAHQAYYYVAMKFKDLYASLT--GRKLFV 790 (844)
Q Consensus 721 ~tpiILfLNK~DLfeeKI~~--spLs~c~~FPDF~g~~~~~------n~~sl~e~A~~YI~~KFl~L~~s~~--~Rklyv 790 (844)
..++||||||+|++++||.. +.+. +|||+|.+...+. +.+..+..|..||+..|+++..... .+-+|.
T Consensus 269 tisvIlFLNKqDllaeKi~Agk~~i~--dyFpEf~~y~~p~da~~es~~d~~v~raK~fird~FlRiSta~~Dg~h~CYp 346 (379)
T KOG0099|consen 269 TISVILFLNKQDLLAEKILAGKSKIE--DYFPEFARYTTPEDATPESGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYP 346 (379)
T ss_pred hhheeEEecHHHHHHHHHHcchhhHH--HhChHHhccCCccccCCCCCCChhhHHHHHhhhhhHhhhccccCCCceeccc
Confidence 99999999999999999975 4566 5699998765432 1234578889999999999865322 468999
Q ss_pred EEEeecCCCCHHHHHHHHHHHHhhhhhcccC
Q 042025 791 WQARARDRVTVDEAFKYIREVLKWDDEKEDN 821 (844)
Q Consensus 791 h~T~AtDte~I~evF~~V~e~Ik~~~~k~~~ 821 (844)
|||||+||++|+.+|..++++|.+.+++..+
T Consensus 347 HFTcAvDTenIrrVFnDcrdiIqr~hlrqye 377 (379)
T KOG0099|consen 347 HFTCAVDTENIRRVFNDCRDIIQRMHLRQYE 377 (379)
T ss_pred ceeEeechHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999988743
No 7
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=1e-19 Score=175.78 Aligned_cols=118 Identities=16% Similarity=0.302 Sum_probs=104.5
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcEE
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFV 725 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpiI 725 (844)
.+|.+|||||| .+.|+.|.|||.+..++|||+|.++ .|||+||++.+.+|++++.+.+.+|+
T Consensus 61 ~kfNvwdvGGq-d~iRplWrhYy~gtqglIFV~Dsa~-----------------~dr~eeAr~ELh~ii~~~em~~~~~L 122 (180)
T KOG0071|consen 61 VKFNVWDVGGQ-DKIRPLWRHYYTGTQGLIFVVDSAD-----------------RDRIEEARNELHRIINDREMRDAIIL 122 (180)
T ss_pred eEEeeeeccCc-hhhhHHHHhhccCCceEEEEEeccc-----------------hhhHHHHHHHHHHHhCCHhhhcceEE
Confidence 68999999999 8999999999999999999999985 69999999999999999999999999
Q ss_pred EEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHHHHH
Q 042025 726 LILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVDEAF 805 (844)
Q Consensus 726 LfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~evF 805 (844)
|++||+|+..+ ++ .+++.+ |++|.+ ..+|.||++.+||.+++++.++|
T Consensus 123 vlANkQDlp~A------~~--------------------pqei~d-----~leLe~-~r~~~W~vqp~~a~~gdgL~egl 170 (180)
T KOG0071|consen 123 ILANKQDLPDA------MK--------------------PQEIQD-----KLELER-IRDRNWYVQPSCALSGDGLKEGL 170 (180)
T ss_pred EEecCcccccc------cC--------------------HHHHHH-----Hhcccc-ccCCccEeeccccccchhHHHHH
Confidence 99999999875 22 244433 456665 67899999999999999999999
Q ss_pred HHHHHHHh
Q 042025 806 KYIREVLK 813 (844)
Q Consensus 806 ~~V~e~Ik 813 (844)
.|+.+.++
T Consensus 171 swlsnn~~ 178 (180)
T KOG0071|consen 171 SWLSNNLK 178 (180)
T ss_pred HHHHhhcc
Confidence 99987653
No 8
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=9e-19 Score=175.77 Aligned_cols=120 Identities=23% Similarity=0.358 Sum_probs=104.8
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcEE
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFV 725 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpiI 725 (844)
++|++|||||| .+.|..|.|||.+.++||||||++| ..||.|+++.+..+++++.+.++|++
T Consensus 61 ~~f~vWDvGGq-~k~R~lW~~Y~~~t~~lIfVvDS~D-----------------r~Ri~eak~eL~~~l~~~~l~~~~ll 122 (181)
T KOG0070|consen 61 ISFTVWDVGGQ-EKLRPLWKHYFQNTQGLIFVVDSSD-----------------RERIEEAKEELHRMLAEPELRNAPLL 122 (181)
T ss_pred eEEEEEecCCC-cccccchhhhccCCcEEEEEEeCCc-----------------HHHHHHHHHHHHHHHcCcccCCceEE
Confidence 68999999999 8999999999999999999999996 78999999999999999999999999
Q ss_pred EEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHHHHH
Q 042025 726 LILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVDEAF 805 (844)
Q Consensus 726 LfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~evF 805 (844)
+|+||+|+..+ ++. .+ |.++ +.+. +..+|.||++.|||+.|+++.+++
T Consensus 123 v~aNKqD~~~a------ls~--------------------~e----i~~~-L~l~-~l~~~~w~iq~~~a~~G~GL~egl 170 (181)
T KOG0070|consen 123 VFANKQDLPGA------LSA--------------------AE----ITNK-LGLH-SLRSRNWHIQSTCAISGEGLYEGL 170 (181)
T ss_pred EEechhhcccc------CCH--------------------HH----HHhH-hhhh-ccCCCCcEEeeccccccccHHHHH
Confidence 99999999875 321 11 2222 4555 356799999999999999999999
Q ss_pred HHHHHHHhhh
Q 042025 806 KYIREVLKWD 815 (844)
Q Consensus 806 ~~V~e~Ik~~ 815 (844)
+|+.+.|...
T Consensus 171 ~wl~~~~~~~ 180 (181)
T KOG0070|consen 171 DWLSNNLKKR 180 (181)
T ss_pred HHHHHHHhcc
Confidence 9999988653
No 9
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.71 E-value=1.4e-16 Score=158.34 Aligned_cols=117 Identities=22% Similarity=0.389 Sum_probs=99.1
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcEE
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFV 725 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpiI 725 (844)
.++.+||+||+ ...|..|.+||.++++||||||.+| .+||.|++++|..+++++.+++.|++
T Consensus 58 ~~~~~~d~gG~-~~~~~~w~~y~~~~~~iIfVvDssd-----------------~~~l~e~~~~L~~ll~~~~~~~~piL 119 (175)
T PF00025_consen 58 YSLTIWDLGGQ-ESFRPLWKSYFQNADGIIFVVDSSD-----------------PERLQEAKEELKELLNDPELKDIPIL 119 (175)
T ss_dssp EEEEEEEESSS-GGGGGGGGGGHTTESEEEEEEETTG-----------------GGGHHHHHHHHHHHHTSGGGTTSEEE
T ss_pred EEEEEEecccc-ccccccceeeccccceeEEEEeccc-----------------ceeecccccchhhhcchhhcccceEE
Confidence 68999999999 8899999999999999999999995 67999999999999999999999999
Q ss_pred EEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccC-CCCcEEEEEEeecCCCCHHHH
Q 042025 726 LILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASL-TGRKLFVWQARARDRVTVDEA 804 (844)
Q Consensus 726 LfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~-~~Rklyvh~T~AtDte~I~ev 804 (844)
|++||+|+... +. .++... ++.+.. + ..|+|.++.|||.+++|+.++
T Consensus 120 Il~NK~D~~~~------~~--------------------~~~i~~-----~l~l~~-l~~~~~~~v~~~sa~~g~Gv~e~ 167 (175)
T PF00025_consen 120 ILANKQDLPDA------MS--------------------EEEIKE-----YLGLEK-LKNKRPWSVFSCSAKTGEGVDEG 167 (175)
T ss_dssp EEEESTTSTTS------ST--------------------HHHHHH-----HTTGGG-TTSSSCEEEEEEBTTTTBTHHHH
T ss_pred EEeccccccCc------ch--------------------hhHHHh-----hhhhhh-cccCCceEEEeeeccCCcCHHHH
Confidence 99999998652 11 122222 233332 3 368999999999999999999
Q ss_pred HHHHHHHH
Q 042025 805 FKYIREVL 812 (844)
Q Consensus 805 F~~V~e~I 812 (844)
|+|+.+.|
T Consensus 168 l~WL~~~~ 175 (175)
T PF00025_consen 168 LEWLIEQI 175 (175)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhcC
Confidence 99999876
No 10
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.62 E-value=2.3e-15 Score=146.47 Aligned_cols=122 Identities=17% Similarity=0.245 Sum_probs=102.8
Q ss_pred CCceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCc
Q 042025 644 PLTKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTP 723 (844)
Q Consensus 644 ~~~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tp 723 (844)
..++|++||+||| .+.|..|..||+|+++||||||.+| ..|+.-|..+|-+++..+.+.++-
T Consensus 60 KNLk~~vwdLggq-tSirPyWRcYy~dt~avIyVVDssd-----------------~dris~a~~el~~mL~E~eLq~a~ 121 (182)
T KOG0072|consen 60 KNLKFQVWDLGGQ-TSIRPYWRCYYADTDAVIYVVDSSD-----------------RDRISIAGVELYSMLQEEELQHAK 121 (182)
T ss_pred ccccceeeEccCc-ccccHHHHHHhcccceEEEEEeccc-----------------hhhhhhhHHHHHHHhccHhhcCce
Confidence 4679999999999 7999999999999999999999996 456678899999999999999999
Q ss_pred EEEEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHHH
Q 042025 724 FVLILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVDE 803 (844)
Q Consensus 724 iILfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~e 803 (844)
++||+||+|.-.. ++ ..++.. -+.+.+ +++|.|.++-+||+.+++++.
T Consensus 122 llv~anKqD~~~~------~t--------------------~~E~~~-----~L~l~~-Lk~r~~~Iv~tSA~kg~Gld~ 169 (182)
T KOG0072|consen 122 LLVFANKQDYSGA------LT--------------------RSEVLK-----MLGLQK-LKDRIWQIVKTSAVKGEGLDP 169 (182)
T ss_pred EEEEeccccchhh------hh--------------------HHHHHH-----HhChHH-HhhheeEEEeeccccccCCcH
Confidence 9999999998664 22 112211 244442 457899999999999999999
Q ss_pred HHHHHHHHHhhh
Q 042025 804 AFKYIREVLKWD 815 (844)
Q Consensus 804 vF~~V~e~Ik~~ 815 (844)
+++|+.+.|+.+
T Consensus 170 ~~DWL~~~l~~~ 181 (182)
T KOG0072|consen 170 AMDWLQRPLKSR 181 (182)
T ss_pred HHHHHHHHHhcc
Confidence 999999998764
No 11
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.58 E-value=9.6e-15 Score=144.66 Aligned_cols=120 Identities=17% Similarity=0.223 Sum_probs=100.6
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcEE
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFV 725 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpiI 725 (844)
..+.+|||||| ...|..|.+||+.++++|||||+|| .-||+|.+.++..++....+..+|+|
T Consensus 60 ~~L~iwDvGGq-~~lr~~W~nYfestdglIwvvDssD-----------------~~r~~e~~~~L~~lL~eerlaG~~~L 121 (185)
T KOG0073|consen 60 YTLNIWDVGGQ-KTLRSYWKNYFESTDGLIWVVDSSD-----------------RMRMQECKQELTELLVEERLAGAPLL 121 (185)
T ss_pred eEEEEEEcCCc-chhHHHHHHhhhccCeEEEEEECch-----------------HHHHHHHHHHHHHHHhhhhhcCCceE
Confidence 67999999999 8999999999999999999999996 67999999999999999999999999
Q ss_pred EEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHHHHH
Q 042025 726 LILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVDEAF 805 (844)
Q Consensus 726 LfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~evF 805 (844)
|++||+|+-.+ |+. + ...++.. ...+. +.+.|-+..|||.+|+++.++|
T Consensus 122 vlank~dl~~~------l~~--------------------~-~i~~~~~-L~~l~---ks~~~~l~~cs~~tge~l~~gi 170 (185)
T KOG0073|consen 122 VLANKQDLPGA------LSL--------------------E-EISKALD-LEELA---KSHHWRLVKCSAVTGEDLLEGI 170 (185)
T ss_pred EEEecCcCccc------cCH--------------------H-HHHHhhC-HHHhc---cccCceEEEEeccccccHHHHH
Confidence 99999999754 321 1 1122211 12232 3578999999999999999999
Q ss_pred HHHHHHHhh
Q 042025 806 KYIREVLKW 814 (844)
Q Consensus 806 ~~V~e~Ik~ 814 (844)
+|+.+.+..
T Consensus 171 dWL~~~l~~ 179 (185)
T KOG0073|consen 171 DWLCDDLMS 179 (185)
T ss_pred HHHHHHHHH
Confidence 999998865
No 12
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.48 E-value=2e-13 Score=136.21 Aligned_cols=120 Identities=15% Similarity=0.292 Sum_probs=97.0
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcEE
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFV 725 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpiI 725 (844)
..+++||++|| ...+..|.+||.+++++|||+|+++ ..++.++++.+..++++..+.+.|++
T Consensus 61 ~~~~i~D~~Gq-~~~~~~~~~~~~~a~~iI~V~D~s~-----------------~~s~~~~~~~l~~~l~~~~~~~~pii 122 (181)
T PLN00223 61 ISFTVWDVGGQ-DKIRPLWRHYFQNTQGLIFVVDSND-----------------RDRVVEARDELHRMLNEDELRDAVLL 122 (181)
T ss_pred EEEEEEECCCC-HHHHHHHHHHhccCCEEEEEEeCCc-----------------HHHHHHHHHHHHHHhcCHhhCCCCEE
Confidence 67999999999 7888999999999999999999985 35677888899999998888899999
Q ss_pred EEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHHHHH
Q 042025 726 LILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVDEAF 805 (844)
Q Consensus 726 LfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~evF 805 (844)
|++||+|+..+ .. .++..+ ++.+.. ...|.||+..|||.+++||.++|
T Consensus 123 lv~NK~Dl~~~------~~--------------------~~~~~~-----~l~l~~-~~~~~~~~~~~Sa~~g~gv~e~~ 170 (181)
T PLN00223 123 VFANKQDLPNA------MN--------------------AAEITD-----KLGLHS-LRQRHWYIQSTCATSGEGLYEGL 170 (181)
T ss_pred EEEECCCCCCC------CC--------------------HHHHHH-----HhCccc-cCCCceEEEeccCCCCCCHHHHH
Confidence 99999998542 10 122211 234432 23578898899999999999999
Q ss_pred HHHHHHHhhh
Q 042025 806 KYIREVLKWD 815 (844)
Q Consensus 806 ~~V~e~Ik~~ 815 (844)
+|+.+.|..+
T Consensus 171 ~~l~~~~~~~ 180 (181)
T PLN00223 171 DWLSNNIANK 180 (181)
T ss_pred HHHHHHHhhc
Confidence 9999888654
No 13
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.43 E-value=1.5e-13 Score=133.63 Aligned_cols=119 Identities=13% Similarity=0.279 Sum_probs=97.5
Q ss_pred CceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcE
Q 042025 645 LTKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPF 724 (844)
Q Consensus 645 ~~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpi 724 (844)
.+++.+|||||| ++.|..|.+||++++.+|||+|++| .-|++|.-+.+-.++...-++..|+
T Consensus 61 ~f~LnvwDiGGq-r~IRpyWsNYyenvd~lIyVIDS~D-----------------~krfeE~~~el~ELleeeKl~~vpv 122 (185)
T KOG0074|consen 61 TFHLNVWDIGGQ-RGIRPYWSNYYENVDGLIYVIDSTD-----------------EKRFEEISEELVELLEEEKLAEVPV 122 (185)
T ss_pred cEEEEEEecCCc-cccchhhhhhhhccceEEEEEeCCc-----------------hHhHHHHHHHHHHHhhhhhhhccce
Confidence 368999999999 9999999999999999999999664 4577788888888899899999999
Q ss_pred EEEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHHHH
Q 042025 725 VLILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVDEA 804 (844)
Q Consensus 725 ILfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~ev 804 (844)
++|.||+|++-+ .. +++ |+.| +++. -+..|.|+++.|+|+..+++..+
T Consensus 123 lIfankQdllta------a~--------------------~ee----ia~k-lnl~-~lrdRswhIq~csals~eg~~dg 170 (185)
T KOG0074|consen 123 LIFANKQDLLTA------AK--------------------VEE----IALK-LNLA-GLRDRSWHIQECSALSLEGSTDG 170 (185)
T ss_pred eehhhhhHHHhh------cc--------------------hHH----HHHh-cchh-hhhhceEEeeeCccccccCccCc
Confidence 999999999875 11 111 2222 3443 24579999999999999999999
Q ss_pred HHHHHHHHh
Q 042025 805 FKYIREVLK 813 (844)
Q Consensus 805 F~~V~e~Ik 813 (844)
.+||.....
T Consensus 171 ~~wv~sn~~ 179 (185)
T KOG0074|consen 171 SDWVQSNPE 179 (185)
T ss_pred chhhhcCCC
Confidence 999986543
No 14
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.41 E-value=1.6e-12 Score=128.36 Aligned_cols=118 Identities=17% Similarity=0.328 Sum_probs=94.3
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcEE
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFV 725 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpiI 725 (844)
..+++||++|+ ...+..|.+||.+++++|||+|+++ ..++.++.+.+..++++..+.+.|++
T Consensus 57 ~~l~l~D~~G~-~~~~~~~~~~~~~ad~ii~v~D~t~-----------------~~s~~~~~~~l~~~~~~~~~~~~pii 118 (175)
T smart00177 57 ISFTVWDVGGQ-DKIRPLWRHYYTNTQGLIFVVDSND-----------------RDRIDEAREELHRMLNEDELRDAVIL 118 (175)
T ss_pred EEEEEEECCCC-hhhHHHHHHHhCCCCEEEEEEECCC-----------------HHHHHHHHHHHHHHhhCHhhcCCcEE
Confidence 57999999999 7888899999999999999999985 45688899999999988777889999
Q ss_pred EEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHHHHH
Q 042025 726 LILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVDEAF 805 (844)
Q Consensus 726 LfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~evF 805 (844)
|++||.|+... .. .++ |..+ ..+.. ...|.+|+..|||.+++||+++|
T Consensus 119 lv~NK~Dl~~~------~~--------------------~~~----i~~~-~~~~~-~~~~~~~~~~~Sa~~g~gv~e~~ 166 (175)
T smart00177 119 VFANKQDLPDA------MK--------------------AAE----ITEK-LGLHS-IRDRNWYIQPTCATSGDGLYEGL 166 (175)
T ss_pred EEEeCcCcccC------CC--------------------HHH----HHHH-hCccc-cCCCcEEEEEeeCCCCCCHHHHH
Confidence 99999998542 10 111 1111 23322 23578999999999999999999
Q ss_pred HHHHHHHh
Q 042025 806 KYIREVLK 813 (844)
Q Consensus 806 ~~V~e~Ik 813 (844)
+||.+.+.
T Consensus 167 ~~l~~~~~ 174 (175)
T smart00177 167 TWLSNNLK 174 (175)
T ss_pred HHHHHHhc
Confidence 99988753
No 15
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.37 E-value=2.9e-12 Score=125.45 Aligned_cols=119 Identities=20% Similarity=0.354 Sum_probs=100.9
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcEE
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFV 725 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpiI 725 (844)
..+++||+||| +..|..|..|+..|++|+||||.+| ..++.-|+..+.+++..|.+.+.|++
T Consensus 65 vtiklwD~gGq-~rfrsmWerycR~v~aivY~VDaad-----------------~~k~~~sr~EL~~LL~k~~l~gip~L 126 (186)
T KOG0075|consen 65 VTIKLWDLGGQ-PRFRSMWERYCRGVSAIVYVVDAAD-----------------PDKLEASRSELHDLLDKPSLTGIPLL 126 (186)
T ss_pred eEEEEEecCCC-ccHHHHHHHHhhcCcEEEEEeecCC-----------------cccchhhHHHHHHHhcchhhcCCcEE
Confidence 67999999999 8999999999999999999999996 34567899999999999999999999
Q ss_pred EEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHHHHH
Q 042025 726 LILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVDEAF 805 (844)
Q Consensus 726 LfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~evF 805 (844)
++.||.|+..+ |.. .+ |..+ ..|. +.++|.+..+..+|.+..||+.++
T Consensus 127 VLGnK~d~~~A------L~~--------------------~~----li~r-mgL~-sitdREvcC~siScke~~Nid~~~ 174 (186)
T KOG0075|consen 127 VLGNKIDLPGA------LSK--------------------IA----LIER-MGLS-SITDREVCCFSISCKEKVNIDITL 174 (186)
T ss_pred EecccccCccc------ccH--------------------HH----HHHH-hCcc-ccccceEEEEEEEEcCCccHHHHH
Confidence 99999999875 431 11 1122 3443 467999999999999999999999
Q ss_pred HHHHHHHhh
Q 042025 806 KYIREVLKW 814 (844)
Q Consensus 806 ~~V~e~Ik~ 814 (844)
+|+.+.-+.
T Consensus 175 ~Wli~hsk~ 183 (186)
T KOG0075|consen 175 DWLIEHSKS 183 (186)
T ss_pred HHHHHHhhh
Confidence 999987654
No 16
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.37 E-value=2.2e-12 Score=126.28 Aligned_cols=116 Identities=17% Similarity=0.291 Sum_probs=90.9
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcEE
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFV 725 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpiI 725 (844)
.++++||++|+ ...|..|.+||.+++++|||+|.++ ..++.++...+..+.+++.+.+.|++
T Consensus 43 ~~~~i~D~~G~-~~~~~~~~~~~~~a~~ii~V~D~s~-----------------~~s~~~~~~~l~~l~~~~~~~~~pil 104 (167)
T cd04161 43 YEVCIFDLGGG-ANFRGIWVNYYAEAHGLVFVVDSSD-----------------DDRVQEVKEILRELLQHPRVSGKPIL 104 (167)
T ss_pred EEEEEEECCCc-HHHHHHHHHHHcCCCEEEEEEECCc-----------------hhHHHHHHHHHHHHHcCccccCCcEE
Confidence 57999999999 7788899999999999999999985 45788899999999998888899999
Q ss_pred EEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhc--cCCCCcEEEEEEeecCC-----
Q 042025 726 LILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYA--SLTGRKLFVWQARARDR----- 798 (844)
Q Consensus 726 LfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~--s~~~Rklyvh~T~AtDt----- 798 (844)
|++||.|+.... + ..+..++ +.+.. ...++.+++..|+|.++
T Consensus 105 iv~NK~Dl~~~~------~--------------------~~~i~~~-----~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~ 153 (167)
T cd04161 105 VLANKQDKKNAL------L--------------------GADVIEY-----LSLEKLVNENKSLCHIEPCSAIEGLGKKI 153 (167)
T ss_pred EEEeCCCCcCCC------C--------------------HHHHHHh-----cCcccccCCCCceEEEEEeEceeCCCCcc
Confidence 999999986531 0 0111111 11211 11245789999999998
Q ss_pred -CCHHHHHHHHHH
Q 042025 799 -VTVDEAFKYIRE 810 (844)
Q Consensus 799 -e~I~evF~~V~e 810 (844)
++|+++|+||.+
T Consensus 154 ~~g~~~~~~wl~~ 166 (167)
T cd04161 154 DPSIVEGLRWLLA 166 (167)
T ss_pred ccCHHHHHHHHhc
Confidence 899999999964
No 17
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.34 E-value=5e-12 Score=124.33 Aligned_cols=115 Identities=16% Similarity=0.293 Sum_probs=91.2
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcEE
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFV 725 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpiI 725 (844)
.++++||++|+ ...+..|.++|.+++++|||+|+++ ...+.+....+..++++..+.++|++
T Consensus 53 ~~~~l~Dt~G~-~~~~~~~~~~~~~a~~ii~v~D~t~-----------------~~s~~~~~~~~~~~~~~~~~~~~pii 114 (168)
T cd04149 53 VKFNVWDVGGQ-DKIRPLWRHYYTGTQGLIFVVDSAD-----------------RDRIDEARQELHRIINDREMRDALLL 114 (168)
T ss_pred EEEEEEECCCC-HHHHHHHHHHhccCCEEEEEEeCCc-----------------hhhHHHHHHHHHHHhcCHhhcCCcEE
Confidence 67999999999 7788899999999999999999885 34677888999999988777889999
Q ss_pred EEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHHHHH
Q 042025 726 LILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVDEAF 805 (844)
Q Consensus 726 LfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~evF 805 (844)
|++||.|+... .. .+++.+ +.++.. ...+.++++.|||.+++||+++|
T Consensus 115 lv~NK~Dl~~~------~~--------------------~~~i~~-----~~~~~~-~~~~~~~~~~~SAk~g~gv~~~~ 162 (168)
T cd04149 115 VFANKQDLPDA------MK--------------------PHEIQE-----KLGLTR-IRDRNWYVQPSCATSGDGLYEGL 162 (168)
T ss_pred EEEECcCCccC------CC--------------------HHHHHH-----HcCCCc-cCCCcEEEEEeeCCCCCChHHHH
Confidence 99999998542 11 122222 223322 23467889999999999999999
Q ss_pred HHHHH
Q 042025 806 KYIRE 810 (844)
Q Consensus 806 ~~V~e 810 (844)
+||.+
T Consensus 163 ~~l~~ 167 (168)
T cd04149 163 TWLSS 167 (168)
T ss_pred HHHhc
Confidence 99864
No 18
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.32 E-value=8.9e-12 Score=124.41 Aligned_cols=120 Identities=18% Similarity=0.284 Sum_probs=94.3
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcEE
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFV 725 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpiI 725 (844)
..+++||++|+ ...+..|.+||.+++++|||+|+++ .+++.++.+.+..+++...+.+.|+|
T Consensus 61 ~~~~l~D~~G~-~~~~~~~~~~~~~ad~iI~v~D~t~-----------------~~s~~~~~~~l~~~~~~~~~~~~pii 122 (182)
T PTZ00133 61 LKFTMWDVGGQ-DKLRPLWRHYYQNTNGLIFVVDSND-----------------RERIGDAREELERMLSEDELRDAVLL 122 (182)
T ss_pred EEEEEEECCCC-HhHHHHHHHHhcCCCEEEEEEeCCC-----------------HHHHHHHHHHHHHHHhCHhhcCCCEE
Confidence 57999999999 7888899999999999999999885 45677888899999888778889999
Q ss_pred EEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHHHHH
Q 042025 726 LILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVDEAF 805 (844)
Q Consensus 726 LfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~evF 805 (844)
|++||.|+.+. .. .++..+ .+.+. ....+.|++..|||.+++||+++|
T Consensus 123 lv~NK~Dl~~~------~~--------------------~~~i~~-----~l~~~-~~~~~~~~~~~~Sa~tg~gv~e~~ 170 (182)
T PTZ00133 123 VFANKQDLPNA------MS--------------------TTEVTE-----KLGLH-SVRQRNWYIQGCCATTAQGLYEGL 170 (182)
T ss_pred EEEeCCCCCCC------CC--------------------HHHHHH-----HhCCC-cccCCcEEEEeeeCCCCCCHHHHH
Confidence 99999998542 10 111111 12232 123577888899999999999999
Q ss_pred HHHHHHHhhh
Q 042025 806 KYIREVLKWD 815 (844)
Q Consensus 806 ~~V~e~Ik~~ 815 (844)
+||.+.+.++
T Consensus 171 ~~l~~~i~~~ 180 (182)
T PTZ00133 171 DWLSANIKKS 180 (182)
T ss_pred HHHHHHHHHh
Confidence 9999877543
No 19
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.31 E-value=8e-12 Score=121.45 Aligned_cols=115 Identities=19% Similarity=0.350 Sum_probs=90.8
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcEE
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFV 725 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpiI 725 (844)
.++.+||++|| ...+..|.++|.+++++|||+|+++ .+++.++.+.+..++.++.+.+.|++
T Consensus 44 ~~~~l~D~~G~-~~~~~~~~~~~~~ad~~i~v~D~~~-----------------~~s~~~~~~~~~~~~~~~~~~~~pii 105 (159)
T cd04150 44 ISFTVWDVGGQ-DKIRPLWRHYFQNTQGLIFVVDSND-----------------RERIGEAREELQRMLNEDELRDAVLL 105 (159)
T ss_pred EEEEEEECCCC-HhHHHHHHHHhcCCCEEEEEEeCCC-----------------HHHHHHHHHHHHHHHhcHHhcCCCEE
Confidence 67999999999 6778899999999999999999985 45688888999999988888889999
Q ss_pred EEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHHHHH
Q 042025 726 LILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVDEAF 805 (844)
Q Consensus 726 LfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~evF 805 (844)
|++||.|+... .. .++ +..++ .+.. ..+|.+++..|||.+++||+++|
T Consensus 106 lv~NK~Dl~~~------~~--------------------~~~----i~~~~-~~~~-~~~~~~~~~~~Sak~g~gv~~~~ 153 (159)
T cd04150 106 VFANKQDLPNA------MS--------------------AAE----VTDKL-GLHS-LRNRNWYIQATCATSGDGLYEGL 153 (159)
T ss_pred EEEECCCCCCC------CC--------------------HHH----HHHHh-Cccc-cCCCCEEEEEeeCCCCCCHHHHH
Confidence 99999998431 00 111 11222 2221 23578888999999999999999
Q ss_pred HHHHH
Q 042025 806 KYIRE 810 (844)
Q Consensus 806 ~~V~e 810 (844)
+||.+
T Consensus 154 ~~l~~ 158 (159)
T cd04150 154 DWLSN 158 (159)
T ss_pred HHHhc
Confidence 99864
No 20
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.31 E-value=2.2e-11 Score=119.21 Aligned_cols=120 Identities=18% Similarity=0.306 Sum_probs=93.7
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcEE
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFV 725 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpiI 725 (844)
.++++||++|+ ...+..|.++|.+++++|||+|+++ .+++.++...+..++++..+.+.|++
T Consensus 43 ~~i~l~Dt~G~-~~~~~~~~~~~~~ad~ii~V~D~s~-----------------~~s~~~~~~~~~~~~~~~~~~~~pii 104 (169)
T cd04158 43 LKFTIWDVGGK-HKLRPLWKHYYLNTQAVVFVVDSSH-----------------RDRVSEAHSELAKLLTEKELRDALLL 104 (169)
T ss_pred EEEEEEECCCC-hhcchHHHHHhccCCEEEEEEeCCc-----------------HHHHHHHHHHHHHHhcChhhCCCCEE
Confidence 68999999999 7788899999999999999999985 46778888999999988777889999
Q ss_pred EEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHHHHH
Q 042025 726 LILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVDEAF 805 (844)
Q Consensus 726 LfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~evF 805 (844)
|++||+|+..+ .. .+++.+++ .+......+.+++..|||.++.||+++|
T Consensus 105 lv~NK~Dl~~~------~~--------------------~~~~~~~~-----~~~~~~~~~~~~~~~~Sa~~g~gv~~~f 153 (169)
T cd04158 105 IFANKQDVAGA------LS--------------------VEEMTELL-----SLHKLCCGRSWYIQGCDARSGMGLYEGL 153 (169)
T ss_pred EEEeCcCcccC------CC--------------------HHHHHHHh-----CCccccCCCcEEEEeCcCCCCCCHHHHH
Confidence 99999998531 11 12332322 2221112457888899999999999999
Q ss_pred HHHHHHHhh
Q 042025 806 KYIREVLKW 814 (844)
Q Consensus 806 ~~V~e~Ik~ 814 (844)
+|+.+.+..
T Consensus 154 ~~l~~~~~~ 162 (169)
T cd04158 154 DWLSRQLVA 162 (169)
T ss_pred HHHHHHHhh
Confidence 999876543
No 21
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.30 E-value=2.4e-12 Score=128.91 Aligned_cols=121 Identities=15% Similarity=0.243 Sum_probs=99.5
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcEE
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFV 725 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpiI 725 (844)
..+.+||+||| ...|..|..||..+++|||+||.++ ..||+++...|++++.++.+.++|++
T Consensus 69 ~~l~fwdlgGQ-e~lrSlw~~yY~~~H~ii~viDa~~-----------------~eR~~~~~t~~~~v~~~E~leg~p~L 130 (197)
T KOG0076|consen 69 APLSFWDLGGQ-ESLRSLWKKYYWLAHGIIYVIDATD-----------------RERFEESKTAFEKVVENEKLEGAPVL 130 (197)
T ss_pred ceeEEEEcCCh-HHHHHHHHHHHHHhceeEEeecCCC-----------------HHHHHHHHHHHHHHHHHHHhcCCchh
Confidence 47899999999 8999999999999999999999884 68999999999999999999999999
Q ss_pred EEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHHHHH
Q 042025 726 LILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVDEAF 805 (844)
Q Consensus 726 LfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~evF 805 (844)
+++||+|+-.+ .. +.+ |..-|-. ......|..-+..++|+++++|++++
T Consensus 131 ~lankqd~q~~------~~--------------------~~E----l~~~~~~-~e~~~~rd~~~~pvSal~gegv~egi 179 (197)
T KOG0076|consen 131 VLANKQDLQNA------ME--------------------AAE----LDGVFGL-AELIPRRDNPFQPVSALTGEGVKEGI 179 (197)
T ss_pred hhcchhhhhhh------hh--------------------HHH----HHHHhhh-hhhcCCccCccccchhhhcccHHHHH
Confidence 99999998664 11 111 2222322 11123466668999999999999999
Q ss_pred HHHHHHHhhh
Q 042025 806 KYIREVLKWD 815 (844)
Q Consensus 806 ~~V~e~Ik~~ 815 (844)
.|+...+.++
T Consensus 180 ~w~v~~~~kn 189 (197)
T KOG0076|consen 180 EWLVKKLEKN 189 (197)
T ss_pred HHHHHHHhhc
Confidence 9999887665
No 22
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.25 E-value=2.4e-11 Score=121.17 Aligned_cols=117 Identities=21% Similarity=0.345 Sum_probs=91.4
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcEE
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFV 725 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpiI 725 (844)
.++.+||++|+ ...+..|.+||.+++++|||+|+++ ..++.++...+..+++...+.+.|+|
T Consensus 61 ~~~~~~D~~G~-~~~~~~~~~~~~~ad~ii~vvD~~~-----------------~~~~~~~~~~l~~l~~~~~~~~~pil 122 (184)
T smart00178 61 IKFTTFDLGGH-QQARRLWKDYFPEVNGIVYLVDAYD-----------------KERFAESKRELDALLSDEELATVPFL 122 (184)
T ss_pred EEEEEEECCCC-HHHHHHHHHHhCCCCEEEEEEECCc-----------------HHHHHHHHHHHHHHHcChhhcCCCEE
Confidence 57899999999 7788899999999999999999985 35677888889999988778899999
Q ss_pred EEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhc------cCCCCcEEEEEEeecCCC
Q 042025 726 LILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYA------SLTGRKLFVWQARARDRV 799 (844)
Q Consensus 726 LfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~------s~~~Rklyvh~T~AtDte 799 (844)
|++||+|+..+ +. .++..++ +++.. ....|.++++.|||+.++
T Consensus 123 iv~NK~Dl~~~------~~--------------------~~~i~~~-----l~l~~~~~~~~~~~~~~~~i~~~Sa~~~~ 171 (184)
T smart00178 123 ILGNKIDAPYA------AS--------------------EDELRYA-----LGLTNTTGSKGKVGVRPLEVFMCSVVRRM 171 (184)
T ss_pred EEEeCccccCC------CC--------------------HHHHHHH-----cCCCcccccccccCCceeEEEEeecccCC
Confidence 99999998532 11 1121111 12221 012478999999999999
Q ss_pred CHHHHHHHHHHH
Q 042025 800 TVDEAFKYIREV 811 (844)
Q Consensus 800 ~I~evF~~V~e~ 811 (844)
+++++|+||.+.
T Consensus 172 g~~~~~~wl~~~ 183 (184)
T smart00178 172 GYGEGFKWLSQY 183 (184)
T ss_pred ChHHHHHHHHhh
Confidence 999999999764
No 23
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.17 E-value=1.5e-10 Score=111.48 Aligned_cols=117 Identities=17% Similarity=0.360 Sum_probs=89.1
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcEE
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFV 725 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpiI 725 (844)
..+++||++|+ ...+..|.++|.+++++|||+|.++ ...+.+....+..++.+....+.|++
T Consensus 50 ~~~~l~Dt~G~-~~~~~~~~~~~~~~~~~v~vvd~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~p~i 111 (167)
T cd04160 50 ARLKFWDLGGQ-ESLRSLWDKYYAECHAIIYVIDSTD-----------------RERFEESKSALEKVLRNEALEGVPLL 111 (167)
T ss_pred EEEEEEECCCC-hhhHHHHHHHhCCCCEEEEEEECch-----------------HHHHHHHHHHHHHHHhChhhcCCCEE
Confidence 57999999999 7778889999999999999999875 23567778899999988878899999
Q ss_pred EEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHHHHH
Q 042025 726 LILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVDEAF 805 (844)
Q Consensus 726 LfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~evF 805 (844)
|++||.|+..+ .. .+++.+++..... ....+.+.++.+||+++.+|++.|
T Consensus 112 lv~NK~D~~~~------~~--------------------~~~~~~~~~~~~~----~~~~~~~~~~~~Sa~~g~gv~e~~ 161 (167)
T cd04160 112 ILANKQDLPDA------LS--------------------VEEIKEVFQDKAE----EIGRRDCLVLPVSALEGTGVREGI 161 (167)
T ss_pred EEEEccccccC------CC--------------------HHHHHHHhccccc----cccCCceEEEEeeCCCCcCHHHHH
Confidence 99999998542 10 1222222221111 112356789999999999999999
Q ss_pred HHHHH
Q 042025 806 KYIRE 810 (844)
Q Consensus 806 ~~V~e 810 (844)
+|+.+
T Consensus 162 ~~l~~ 166 (167)
T cd04160 162 EWLVE 166 (167)
T ss_pred HHHhc
Confidence 99864
No 24
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.16 E-value=2.8e-10 Score=108.59 Aligned_cols=115 Identities=17% Similarity=0.379 Sum_probs=86.9
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCC--CCc
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFK--DTP 723 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~--~tp 723 (844)
.++++||++|+ ...+..|..+|.+++++|||+|+++ .+++..+...++.+.+++.+. +.|
T Consensus 45 ~~~~l~Dt~G~-~~~~~~~~~~~~~~d~ii~v~D~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~p 106 (162)
T cd04157 45 LSFTAFDMSGQ-GKYRGLWEHYYKNIQGIIFVIDSSD-----------------RLRLVVVKDELELLLNHPDIKHRRVP 106 (162)
T ss_pred EEEEEEECCCC-HhhHHHHHHHHccCCEEEEEEeCCc-----------------HHHHHHHHHHHHHHHcCcccccCCCC
Confidence 67999999999 7888899999999999999999885 456667777888888877663 699
Q ss_pred EEEEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHHH
Q 042025 724 FVLILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVDE 803 (844)
Q Consensus 724 iILfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~e 803 (844)
++|++||+|+..+. . .++..+ .+.+.. ...+.+.++.|||.++.||++
T Consensus 107 ~iiv~NK~Dl~~~~------~--------------------~~~~~~-----~l~~~~-~~~~~~~~~~~Sa~~g~gv~~ 154 (162)
T cd04157 107 ILFFANKMDLPDAL------T--------------------AVKITQ-----LLGLEN-IKDKPWHIFASNALTGEGLDE 154 (162)
T ss_pred EEEEEeCccccCCC------C--------------------HHHHHH-----HhCCcc-ccCceEEEEEeeCCCCCchHH
Confidence 99999999986431 0 111111 122211 123467788899999999999
Q ss_pred HHHHHHH
Q 042025 804 AFKYIRE 810 (844)
Q Consensus 804 vF~~V~e 810 (844)
+|+||.+
T Consensus 155 ~~~~l~~ 161 (162)
T cd04157 155 GVQWLQA 161 (162)
T ss_pred HHHHHhc
Confidence 9999864
No 25
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.15 E-value=3.6e-10 Score=112.48 Aligned_cols=122 Identities=19% Similarity=0.172 Sum_probs=90.2
Q ss_pred CceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcE
Q 042025 645 LTKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPF 724 (844)
Q Consensus 645 ~~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpi 724 (844)
...+.+||++|+ ...+..|..+|++++++|||+|+++ .+++.++...+..+.......+.|+
T Consensus 51 ~~~l~l~Dt~G~-~~~~~~~~~~~~~~d~ii~v~D~~~-----------------~~~~~~~~~~~~~i~~~~~~~~~p~ 112 (183)
T cd04152 51 GITFHFWDVGGQ-EKLRPLWKSYTRCTDGIVFVVDSVD-----------------VERMEEAKTELHKITRFSENQGVPV 112 (183)
T ss_pred ceEEEEEECCCc-HhHHHHHHHHhccCCEEEEEEECCC-----------------HHHHHHHHHHHHHHHhhhhcCCCcE
Confidence 368999999999 6778899999999999999999885 3456666677777776555567999
Q ss_pred EEEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHHHH
Q 042025 725 VLILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVDEA 804 (844)
Q Consensus 725 ILfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~ev 804 (844)
+|++||.|+... .. .+... ++..+......+.++++.|||++++||+++
T Consensus 113 iiv~NK~D~~~~------~~--------------------~~~~~-----~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l 161 (183)
T cd04152 113 LVLANKQDLPNA------LS--------------------VSEVE-----KLLALHELSASTPWHVQPACAIIGEGLQEG 161 (183)
T ss_pred EEEEECcCcccc------CC--------------------HHHHH-----HHhCccccCCCCceEEEEeecccCCCHHHH
Confidence 999999998642 11 11111 233332211224577899999999999999
Q ss_pred HHHHHHHHhhh
Q 042025 805 FKYIREVLKWD 815 (844)
Q Consensus 805 F~~V~e~Ik~~ 815 (844)
|+++.+.+...
T Consensus 162 ~~~l~~~l~~~ 172 (183)
T cd04152 162 LEKLYEMILKR 172 (183)
T ss_pred HHHHHHHHHHH
Confidence 99999888543
No 26
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.14 E-value=2.2e-10 Score=112.88 Aligned_cols=115 Identities=14% Similarity=0.270 Sum_probs=88.8
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcEE
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFV 725 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpiI 725 (844)
.++.+||++|+ ...+..|..+|.+++++|||+|.++ .+++.++.+.+..++++..+.+.|++
T Consensus 59 ~~~~l~D~~G~-~~~~~~~~~~~~~~d~vi~V~D~s~-----------------~~~~~~~~~~l~~~~~~~~~~~~p~v 120 (174)
T cd04153 59 IRFLMWDIGGQ-ESLRSSWNTYYTNTDAVILVIDSTD-----------------RERLPLTKEELYKMLAHEDLRKAVLL 120 (174)
T ss_pred eEEEEEECCCC-HHHHHHHHHHhhcCCEEEEEEECCC-----------------HHHHHHHHHHHHHHHhchhhcCCCEE
Confidence 57999999999 7778899999999999999999884 35677788889999988778889999
Q ss_pred EEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHHHHH
Q 042025 726 LILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVDEAF 805 (844)
Q Consensus 726 LfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~evF 805 (844)
|++||.|+... .. .++..+ . +.+. ....+.+.+..+||.++++|+++|
T Consensus 121 iv~NK~Dl~~~------~~--------------------~~~i~~----~-l~~~-~~~~~~~~~~~~SA~~g~gi~e~~ 168 (174)
T cd04153 121 VLANKQDLKGA------MT--------------------PAEISE----S-LGLT-SIRDHTWHIQGCCALTGEGLPEGL 168 (174)
T ss_pred EEEECCCCCCC------CC--------------------HHHHHH----H-hCcc-cccCCceEEEecccCCCCCHHHHH
Confidence 99999998641 10 111111 1 1211 112456788999999999999999
Q ss_pred HHHHH
Q 042025 806 KYIRE 810 (844)
Q Consensus 806 ~~V~e 810 (844)
+||..
T Consensus 169 ~~l~~ 173 (174)
T cd04153 169 DWIAS 173 (174)
T ss_pred HHHhc
Confidence 99853
No 27
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.11 E-value=4.6e-10 Score=111.08 Aligned_cols=121 Identities=21% Similarity=0.336 Sum_probs=89.4
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcEE
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFV 725 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpiI 725 (844)
.++++||++|+ ...+..|.+++.+++++|||+|+++ .+++.++...+..+++.....+.|++
T Consensus 63 ~~~~l~D~~G~-~~~~~~~~~~~~~ad~iilV~D~~~-----------------~~s~~~~~~~~~~i~~~~~~~~~pvi 124 (190)
T cd00879 63 IKFKTFDLGGH-EQARRLWKDYFPEVDGIVFLVDAAD-----------------PERFQESKEELDSLLSDEELANVPFL 124 (190)
T ss_pred EEEEEEECCCC-HHHHHHHHHHhccCCEEEEEEECCc-----------------HHHHHHHHHHHHHHHcCccccCCCEE
Confidence 57899999999 6778899999999999999999885 35677788899999988777889999
Q ss_pred EEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHH-H-----HhhhccCCCCcEEEEEEeecCCC
Q 042025 726 LILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMK-F-----KDLYASLTGRKLFVWQARARDRV 799 (844)
Q Consensus 726 LfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~K-F-----l~L~~s~~~Rklyvh~T~AtDte 799 (844)
|++||+|+..+ .. .+++.+++... + ..+. ....+.+.++.|||.+++
T Consensus 125 vv~NK~Dl~~~------~~--------------------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~Sa~~~~ 177 (190)
T cd00879 125 ILGNKIDLPGA------VS--------------------EEELRQALGLYGTTTGKGVSLK-VSGIRPIEVFMCSVVKRQ 177 (190)
T ss_pred EEEeCCCCCCC------cC--------------------HHHHHHHhCccccccccccccc-ccCceeEEEEEeEecCCC
Confidence 99999998531 11 11122212100 0 0000 011356778999999999
Q ss_pred CHHHHHHHHHHH
Q 042025 800 TVDEAFKYIREV 811 (844)
Q Consensus 800 ~I~evF~~V~e~ 811 (844)
||.++|+|+.+.
T Consensus 178 gv~e~~~~l~~~ 189 (190)
T cd00879 178 GYGEAFRWLSQY 189 (190)
T ss_pred ChHHHHHHHHhh
Confidence 999999999765
No 28
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.06 E-value=9.9e-10 Score=105.02 Aligned_cols=115 Identities=23% Similarity=0.337 Sum_probs=87.4
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcEE
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFV 725 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpiI 725 (844)
..+.+||++|+ ...+..|..+|.+++++|||+|+++ .+++.+....+..++.++.+.+.|++
T Consensus 44 ~~l~i~D~~G~-~~~~~~~~~~~~~~~~iv~v~D~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~pii 105 (160)
T cd04156 44 LSLTVWDVGGQ-EKMRTVWKCYLENTDGLVYVVDSSD-----------------EARLDESQKELKHILKNEHIKGVPVV 105 (160)
T ss_pred eEEEEEECCCC-HhHHHHHHHHhccCCEEEEEEECCc-----------------HHHHHHHHHHHHHHHhchhhcCCCEE
Confidence 57999999999 7778889999999999999999885 34677788889999988777899999
Q ss_pred EEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHHHHH
Q 042025 726 LILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVDEAF 805 (844)
Q Consensus 726 LfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~evF 805 (844)
|++||.|+... .. .+++.. .+ .+......+.+++..|||++++||+++|
T Consensus 106 lv~nK~Dl~~~------~~--------------------~~~i~~----~~-~~~~~~~~~~~~~~~~Sa~~~~gv~~~~ 154 (160)
T cd04156 106 LLANKQDLPGA------LT--------------------AEEITR----RF-KLKKYCSDRDWYVQPCSAVTGEGLAEAF 154 (160)
T ss_pred EEEECcccccC------cC--------------------HHHHHH----Hc-CCcccCCCCcEEEEecccccCCChHHHH
Confidence 99999998531 10 111111 11 1111112356778899999999999999
Q ss_pred HHHH
Q 042025 806 KYIR 809 (844)
Q Consensus 806 ~~V~ 809 (844)
++|.
T Consensus 155 ~~i~ 158 (160)
T cd04156 155 RKLA 158 (160)
T ss_pred HHHh
Confidence 9885
No 29
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.06 E-value=7.6e-10 Score=106.44 Aligned_cols=115 Identities=17% Similarity=0.307 Sum_probs=84.8
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcEE
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFV 725 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpiI 725 (844)
.++++||++|+ ...+..|..+|.+++++|||+|+++ .+++....+.+..+++...+.+.|++
T Consensus 43 ~~~~i~Dt~G~-~~~~~~~~~~~~~~~~ii~v~d~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~pii 104 (158)
T cd04151 43 LKFQVWDLGGQ-TSIRPYWRCYYSNTDAIIYVVDSTD-----------------RDRLGTAKEELHAMLEEEELKGAVLL 104 (158)
T ss_pred EEEEEEECCCC-HHHHHHHHHHhcCCCEEEEEEECCC-----------------HHHHHHHHHHHHHHHhchhhcCCcEE
Confidence 57999999999 7788899999999999999999885 23445556667777776667789999
Q ss_pred EEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHHHHH
Q 042025 726 LILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVDEAF 805 (844)
Q Consensus 726 LfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~evF 805 (844)
|++||+|+..+. . ..+... .+ .+.. ...+.+.++.+||.++.+|+++|
T Consensus 105 iv~nK~Dl~~~~------~--------------------~~~i~~----~~-~~~~-~~~~~~~~~~~Sa~~~~gi~~l~ 152 (158)
T cd04151 105 VFANKQDMPGAL------S--------------------EAEISE----KL-GLSE-LKDRTWSIFKTSAIKGEGLDEGM 152 (158)
T ss_pred EEEeCCCCCCCC------C--------------------HHHHHH----Hh-Cccc-cCCCcEEEEEeeccCCCCHHHHH
Confidence 999999986420 0 111111 11 1111 12345678999999999999999
Q ss_pred HHHHH
Q 042025 806 KYIRE 810 (844)
Q Consensus 806 ~~V~e 810 (844)
+|+.+
T Consensus 153 ~~l~~ 157 (158)
T cd04151 153 DWLVN 157 (158)
T ss_pred HHHhc
Confidence 99865
No 30
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.04 E-value=1.1e-09 Score=112.35 Aligned_cols=117 Identities=15% Similarity=0.226 Sum_probs=83.0
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcEE
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFV 725 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpiI 725 (844)
+++++||++|| ...+..|..||.+++++|||+|+++ ...+++....++ .++.....+.|+|
T Consensus 49 v~l~iwDtaGq-e~~~~l~~~y~~~ad~iIlVfDvtd-----------------~~Sf~~l~~w~~-~i~~~~~~~~pii 109 (202)
T cd04120 49 IRLQIWDTAGQ-ERFNSITSAYYRSAKGIILVYDITK-----------------KETFDDLPKWMK-MIDKYASEDAELL 109 (202)
T ss_pred EEEEEEeCCCc-hhhHHHHHHHhcCCCEEEEEEECcC-----------------HHHHHHHHHHHH-HHHHhCCCCCcEE
Confidence 68999999999 7888999999999999999999985 233444444333 3443344679999
Q ss_pred EEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHHHHH
Q 042025 726 LILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVDEAF 805 (844)
Q Consensus 726 LfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~evF 805 (844)
|+.||.|+..++ .++ .+.+.+ |.+- . +.+.++.|||.++.+|+++|
T Consensus 110 lVgNK~DL~~~~----~v~--------------------~~~~~~-----~a~~---~--~~~~~~etSAktg~gV~e~F 155 (202)
T cd04120 110 LVGNKLDCETDR----EIS--------------------RQQGEK-----FAQQ---I--TGMRFCEASAKDNFNVDEIF 155 (202)
T ss_pred EEEECccccccc----ccC--------------------HHHHHH-----HHHh---c--CCCEEEEecCCCCCCHHHHH
Confidence 999999985421 111 122222 2111 1 12456789999999999999
Q ss_pred HHHHHHHhhh
Q 042025 806 KYIREVLKWD 815 (844)
Q Consensus 806 ~~V~e~Ik~~ 815 (844)
+|+.+.+...
T Consensus 156 ~~l~~~~~~~ 165 (202)
T cd04120 156 LKLVDDILKK 165 (202)
T ss_pred HHHHHHHHHh
Confidence 9999887553
No 31
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.02 E-value=1.4e-09 Score=106.57 Aligned_cols=115 Identities=14% Similarity=0.207 Sum_probs=87.8
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcEE
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFV 725 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpiI 725 (844)
..+.+||++|+ ...+..|..+|.+++++|||+|.++ ..++.+....+..++++....+.|++
T Consensus 58 ~~l~l~D~~G~-~~~~~~~~~~~~~~d~~i~v~d~~~-----------------~~s~~~~~~~~~~~~~~~~~~~~p~i 119 (173)
T cd04154 58 YKLNIWDVGGQ-KTLRPYWRNYFESTDALIWVVDSSD-----------------RLRLDDCKRELKELLQEERLAGATLL 119 (173)
T ss_pred EEEEEEECCCC-HHHHHHHHHHhCCCCEEEEEEECCC-----------------HHHHHHHHHHHHHHHhChhhcCCCEE
Confidence 57899999999 6778889999999999999999874 34567777788888877667789999
Q ss_pred EEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHHHHH
Q 042025 726 LILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVDEAF 805 (844)
Q Consensus 726 LfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~evF 805 (844)
|++||.|+.+.. . .+++.++ ..+.. ...+.+.+..|||.+++||++.|
T Consensus 120 iv~nK~Dl~~~~------~--------------------~~~~~~~-----~~~~~-~~~~~~~~~~~Sa~~g~gi~~l~ 167 (173)
T cd04154 120 ILANKQDLPGAL------S--------------------EEEIREA-----LELDK-ISSHHWRIQPCSAVTGEGLLQGI 167 (173)
T ss_pred EEEECcccccCC------C--------------------HHHHHHH-----hCccc-cCCCceEEEeccCCCCcCHHHHH
Confidence 999999986521 0 1222221 12211 12457889999999999999999
Q ss_pred HHHHH
Q 042025 806 KYIRE 810 (844)
Q Consensus 806 ~~V~e 810 (844)
+|+.+
T Consensus 168 ~~l~~ 172 (173)
T cd04154 168 DWLVD 172 (173)
T ss_pred HHHhc
Confidence 99853
No 32
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.00 E-value=2.6e-09 Score=104.58 Aligned_cols=113 Identities=19% Similarity=0.341 Sum_probs=83.8
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcEE
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFV 725 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpiI 725 (844)
.++++||++|+ ...+..|.++|.+++++|||+|+++ ..++.+++..+..+..+. .+.|+|
T Consensus 44 ~~l~i~Dt~G~-~~~~~~~~~~~~~ad~ii~V~D~t~-----------------~~s~~~~~~~l~~~~~~~--~~~pii 103 (164)
T cd04162 44 AIMELLEIGGS-QNLRKYWKRYLSGSQGLIFVVDSAD-----------------SERLPLARQELHQLLQHP--PDLPLV 103 (164)
T ss_pred eEEEEEECCCC-cchhHHHHHHHhhCCEEEEEEECCC-----------------HHHHHHHHHHHHHHHhCC--CCCcEE
Confidence 57999999999 7888999999999999999999885 345667777788887654 689999
Q ss_pred EEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecC------CC
Q 042025 726 LILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARD------RV 799 (844)
Q Consensus 726 LfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtD------te 799 (844)
|+.||.|+..++ . .+++.+ . +++..-...+.|+++.|||.+ ++
T Consensus 104 lv~NK~Dl~~~~------~--------------------~~~i~~----~-~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~ 152 (164)
T cd04162 104 VLANKQDLPAAR------S--------------------VQEIHK----E-LELEPIARGRRWILQGTSLDDDGSPSRME 152 (164)
T ss_pred EEEeCcCCcCCC------C--------------------HHHHHH----H-hCChhhcCCCceEEEEeeecCCCChhHHH
Confidence 999999986542 0 111111 1 111111124678888899988 99
Q ss_pred CHHHHHHHHH
Q 042025 800 TVDEAFKYIR 809 (844)
Q Consensus 800 ~I~evF~~V~ 809 (844)
+|+++|+.+.
T Consensus 153 ~v~~~~~~~~ 162 (164)
T cd04162 153 AVKDLLSQLI 162 (164)
T ss_pred HHHHHHHHHh
Confidence 9999998664
No 33
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=98.97 E-value=6.6e-09 Score=102.68 Aligned_cols=121 Identities=14% Similarity=0.229 Sum_probs=85.2
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcEE
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFV 725 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpiI 725 (844)
..+++||++|+ ...+..|.++|.+++++|+|+|+++ .+.+....++++.+-....-.+.|+|
T Consensus 50 ~~l~i~Dt~G~-~~~~~l~~~~~~~~d~~ilv~d~~~-----------------~~Sf~~~~~~~~~i~~~~~~~~~pii 111 (172)
T cd04141 50 ALLDILDTAGQ-AEFTAMRDQYMRCGEGFIICYSVTD-----------------RHSFQEASEFKKLITRVRLTEDIPLV 111 (172)
T ss_pred EEEEEEeCCCc-hhhHHHhHHHhhcCCEEEEEEECCc-----------------hhHHHHHHHHHHHHHHhcCCCCCCEE
Confidence 57899999999 7888899999999999999999985 23344444433333332223478999
Q ss_pred EEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHHHHH
Q 042025 726 LILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVDEAF 805 (844)
Q Consensus 726 LfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~evF 805 (844)
|+.||.|+..++ .++ .+++.++ . + .+.+.++.|||.++.+|+++|
T Consensus 112 lvgNK~Dl~~~~----~v~--------------------~~~~~~~-----a---~---~~~~~~~e~Sa~~~~~v~~~f 156 (172)
T cd04141 112 LVGNKVDLESQR----QVT--------------------TEEGRNL-----A---R---EFNCPFFETSAALRHYIDDAF 156 (172)
T ss_pred EEEEChhhhhcC----ccC--------------------HHHHHHH-----H---H---HhCCEEEEEecCCCCCHHHHH
Confidence 999999986531 121 1222221 1 1 123567799999999999999
Q ss_pred HHHHHHHhhhhhcc
Q 042025 806 KYIREVLKWDDEKE 819 (844)
Q Consensus 806 ~~V~e~Ik~~~~k~ 819 (844)
+|+...+...+++.
T Consensus 157 ~~l~~~~~~~~~~~ 170 (172)
T cd04141 157 HGLVREIRRKESMP 170 (172)
T ss_pred HHHHHHHHHhccCC
Confidence 99998888766554
No 34
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=98.96 E-value=6.6e-09 Score=100.15 Aligned_cols=115 Identities=17% Similarity=0.218 Sum_probs=86.5
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcEE
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFV 725 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpiI 725 (844)
..+++||++|| ...+..|..++.+++++|||+|+++ ...+.+..+++..+.+.....+.|+|
T Consensus 49 ~~l~i~Dt~G~-~~~~~~~~~~~~~~d~~ilv~d~~~-----------------~~s~~~~~~~~~~i~~~~~~~~~pii 110 (164)
T cd04175 49 CMLEILDTAGT-EQFTAMRDLYMKNGQGFVLVYSITA-----------------QSTFNDLQDLREQILRVKDTEDVPMI 110 (164)
T ss_pred EEEEEEECCCc-ccchhHHHHHHhhCCEEEEEEECCC-----------------HHHHHHHHHHHHHHHHhcCCCCCCEE
Confidence 57889999999 7888999999999999999999874 34456666777888776666789999
Q ss_pred EEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHHHHH
Q 042025 726 LILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVDEAF 805 (844)
Q Consensus 726 LfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~evF 805 (844)
|++||.|+..++ .+. .+.+..+ .++ ..+.+..|||.++.+|+++|
T Consensus 111 lv~nK~Dl~~~~----~~~--------------------~~~~~~~-~~~----------~~~~~~~~Sa~~~~~v~~~~ 155 (164)
T cd04175 111 LVGNKCDLEDER----VVG--------------------KEQGQNL-ARQ----------WGCAFLETSAKAKINVNEIF 155 (164)
T ss_pred EEEECCcchhcc----EEc--------------------HHHHHHH-HHH----------hCCEEEEeeCCCCCCHHHHH
Confidence 999999986531 111 1222221 111 12457889999999999999
Q ss_pred HHHHHHHh
Q 042025 806 KYIREVLK 813 (844)
Q Consensus 806 ~~V~e~Ik 813 (844)
.||.+.|.
T Consensus 156 ~~l~~~l~ 163 (164)
T cd04175 156 YDLVRQIN 163 (164)
T ss_pred HHHHHHhh
Confidence 99987663
No 35
>PTZ00099 rab6; Provisional
Probab=98.96 E-value=8.3e-09 Score=103.50 Aligned_cols=115 Identities=13% Similarity=0.142 Sum_probs=84.9
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcEE
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFV 725 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpiI 725 (844)
+++.|||++|| ...+..|..||.+++++|||+|+++ ...+......+..+.... -.++|+|
T Consensus 29 v~l~iwDt~G~-e~~~~~~~~~~~~ad~~ilv~D~t~-----------------~~sf~~~~~w~~~i~~~~-~~~~pii 89 (176)
T PTZ00099 29 VRLQLWDTAGQ-ERFRSLIPSYIRDSAAAIVVYDITN-----------------RQSFENTTKWIQDILNER-GKDVIIA 89 (176)
T ss_pred EEEEEEECCCh-HHhhhccHHHhCCCcEEEEEEECCC-----------------HHHHHHHHHHHHHHHHhc-CCCCeEE
Confidence 68999999999 7888899999999999999999985 344556666777776653 2578999
Q ss_pred EEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHHHHH
Q 042025 726 LILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVDEAF 805 (844)
Q Consensus 726 LfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~evF 805 (844)
|+.||+||...+ ++. .+++..+. . . ..+.++.|||.++.+|+++|
T Consensus 90 lVgNK~DL~~~~----~v~--------------------~~e~~~~~-----~---~---~~~~~~e~SAk~g~nV~~lf 134 (176)
T PTZ00099 90 LVGNKTDLGDLR----KVT--------------------YEEGMQKA-----Q---E---YNTMFHETSAKAGHNIKVLF 134 (176)
T ss_pred EEEECccccccc----CCC--------------------HHHHHHHH-----H---H---cCCEEEEEECCCCCCHHHHH
Confidence 999999986421 111 12232221 1 1 12345789999999999999
Q ss_pred HHHHHHHhh
Q 042025 806 KYIREVLKW 814 (844)
Q Consensus 806 ~~V~e~Ik~ 814 (844)
+||.+.+..
T Consensus 135 ~~l~~~l~~ 143 (176)
T PTZ00099 135 KKIAAKLPN 143 (176)
T ss_pred HHHHHHHHh
Confidence 999988744
No 36
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=98.88 E-value=1.9e-08 Score=96.23 Aligned_cols=115 Identities=20% Similarity=0.334 Sum_probs=89.5
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcEE
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFV 725 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpiI 725 (844)
..+.+||++|+ ...+..|..++.+++++|||+|.++ ..++.++...+..++.+....+.|++
T Consensus 43 ~~~~i~D~~G~-~~~~~~~~~~~~~~~~~i~v~D~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~pii 104 (158)
T cd00878 43 VSFTVWDVGGQ-DKIRPLWKHYYENTNGIIFVVDSSD-----------------RERIEEAKEELHKLLNEEELKGVPLL 104 (158)
T ss_pred EEEEEEECCCC-hhhHHHHHHHhccCCEEEEEEECCC-----------------HHHHHHHHHHHHHHHhCcccCCCcEE
Confidence 57999999999 6777889999999999999999884 46788999999999997767789999
Q ss_pred EEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHHHHH
Q 042025 726 LILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVDEAF 805 (844)
Q Consensus 726 LfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~evF 805 (844)
|++||.|+.... . .++..+ + ..+.. ...+.+.++.+||.++.|+++.|
T Consensus 105 iv~nK~D~~~~~------~--------------------~~~~~~----~-~~~~~-~~~~~~~~~~~Sa~~~~gv~~~~ 152 (158)
T cd00878 105 IFANKQDLPGAL------S--------------------VSELIE----K-LGLEK-ILGRRWHIQPCSAVTGDGLDEGL 152 (158)
T ss_pred EEeeccCCcccc------C--------------------HHHHHH----h-hChhh-ccCCcEEEEEeeCCCCCCHHHHH
Confidence 999999986520 0 112111 1 12211 12457789999999999999999
Q ss_pred HHHHH
Q 042025 806 KYIRE 810 (844)
Q Consensus 806 ~~V~e 810 (844)
++|.+
T Consensus 153 ~~l~~ 157 (158)
T cd00878 153 DWLLQ 157 (158)
T ss_pred HHHhh
Confidence 99864
No 37
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=98.88 E-value=1.8e-08 Score=102.21 Aligned_cols=115 Identities=11% Similarity=0.161 Sum_probs=86.5
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcEE
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFV 725 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpiI 725 (844)
+++++||++|| ...+..|..||.+++++|+|+|+++ .+.+.+....++.+..+ ..++|+|
T Consensus 55 ~~l~iwDt~G~-~~~~~l~~~~~~~ad~illVfD~t~-----------------~~Sf~~~~~w~~~i~~~--~~~~pii 114 (189)
T cd04121 55 VKLQLWDTSGQ-GRFCTIFRSYSRGAQGIILVYDITN-----------------RWSFDGIDRWIKEIDEH--APGVPKI 114 (189)
T ss_pred EEEEEEeCCCc-HHHHHHHHHHhcCCCEEEEEEECcC-----------------HHHHHHHHHHHHHHHHh--CCCCCEE
Confidence 68999999999 7788899999999999999999985 45566666666666543 3579999
Q ss_pred EEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHHHHH
Q 042025 726 LILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVDEAF 805 (844)
Q Consensus 726 LfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~evF 805 (844)
|+.||.||...+ .++ .+++..|.. .+.+.++.|||.++.+|+++|
T Consensus 115 lVGNK~DL~~~~----~v~--------------------~~~~~~~a~-----------~~~~~~~e~SAk~g~~V~~~F 159 (189)
T cd04121 115 LVGNRLHLAFKR----QVA--------------------TEQAQAYAE-----------RNGMTFFEVSPLCNFNITESF 159 (189)
T ss_pred EEEECccchhcc----CCC--------------------HHHHHHHHH-----------HcCCEEEEecCCCCCCHHHHH
Confidence 999999996421 111 233333331 123557899999999999999
Q ss_pred HHHHHHHhhh
Q 042025 806 KYIREVLKWD 815 (844)
Q Consensus 806 ~~V~e~Ik~~ 815 (844)
+|+.+.+..+
T Consensus 160 ~~l~~~i~~~ 169 (189)
T cd04121 160 TELARIVLMR 169 (189)
T ss_pred HHHHHHHHHh
Confidence 9999877643
No 38
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=98.88 E-value=1.8e-08 Score=101.30 Aligned_cols=129 Identities=12% Similarity=0.098 Sum_probs=83.4
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcEE
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFV 725 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpiI 725 (844)
+++++||++|| ...+..|..||.+++++|+|.|+++ ...+++....|...+... ..+.|+|
T Consensus 51 ~~l~i~Dt~G~-e~~~~l~~~~~~~a~~~ilvydit~-----------------~~Sf~~~~~~w~~~i~~~-~~~~pii 111 (191)
T cd01875 51 VSLNLWDTAGQ-EEYDRLRTLSYPQTNVFIICFSIAS-----------------PSSYENVRHKWHPEVCHH-CPNVPIL 111 (191)
T ss_pred EEEEEEECCCc-hhhhhhhhhhccCCCEEEEEEECCC-----------------HHHHHHHHHHHHHHHHhh-CCCCCEE
Confidence 67999999999 7888899999999999999999985 234545444343323321 2479999
Q ss_pred EEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHHHHH
Q 042025 726 LILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVDEAF 805 (844)
Q Consensus 726 LfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~evF 805 (844)
|+.||.||..++-....+. +.. . .... .+++.+| .+. .+.+.++.|||.++.||+++|
T Consensus 112 lvgNK~DL~~~~~~~~~~~------~~~-~---~~v~--~~~~~~~--------a~~--~~~~~~~e~SAk~g~~v~e~f 169 (191)
T cd01875 112 LVGTKKDLRNDADTLKKLK------EQG-Q---APIT--PQQGGAL--------AKQ--IHAVKYLECSALNQDGVKEVF 169 (191)
T ss_pred EEEeChhhhcChhhHHHHh------hcc-C---CCCC--HHHHHHH--------HHH--cCCcEEEEeCCCCCCCHHHHH
Confidence 9999999864321000010 000 0 0000 1233221 111 123557789999999999999
Q ss_pred HHHHHHHhhh
Q 042025 806 KYIREVLKWD 815 (844)
Q Consensus 806 ~~V~e~Ik~~ 815 (844)
.++.+.+...
T Consensus 170 ~~l~~~~~~~ 179 (191)
T cd01875 170 AEAVRAVLNP 179 (191)
T ss_pred HHHHHHHhcc
Confidence 9999887654
No 39
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=98.86 E-value=1.8e-08 Score=97.76 Aligned_cols=115 Identities=15% Similarity=0.285 Sum_probs=86.9
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcEE
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFV 725 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpiI 725 (844)
..+.+||++|+ ...+..|..++++++++|||+|.++ ..++.+....+..++......+.|++
T Consensus 58 ~~~~~~D~~G~-~~~~~~~~~~~~~~~~ii~v~D~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~p~i 119 (173)
T cd04155 58 FKLNVWDIGGQ-RAIRPYWRNYFENTDCLIYVIDSAD-----------------KKRLEEAGAELVELLEEEKLAGVPVL 119 (173)
T ss_pred EEEEEEECCCC-HHHHHHHHHHhcCCCEEEEEEeCCC-----------------HHHHHHHHHHHHHHHhChhhcCCCEE
Confidence 47899999999 6777789999999999999999884 34566677777777776666689999
Q ss_pred EEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHHHHH
Q 042025 726 LILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVDEAF 805 (844)
Q Consensus 726 LfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~evF 805 (844)
+++||.|+..+ .. .+++ .+. +++. ....|.+++..+||.+++|++++|
T Consensus 120 vv~nK~D~~~~------~~--------------------~~~i----~~~-l~~~-~~~~~~~~~~~~Sa~~~~gi~~~~ 167 (173)
T cd04155 120 VFANKQDLATA------AP--------------------AEEI----AEA-LNLH-DLRDRTWHIQACSAKTGEGLQEGM 167 (173)
T ss_pred EEEECCCCccC------CC--------------------HHHH----HHH-cCCc-ccCCCeEEEEEeECCCCCCHHHHH
Confidence 99999998642 00 1221 111 2333 134577889999999999999999
Q ss_pred HHHHH
Q 042025 806 KYIRE 810 (844)
Q Consensus 806 ~~V~e 810 (844)
+||.+
T Consensus 168 ~~l~~ 172 (173)
T cd04155 168 NWVCK 172 (173)
T ss_pred HHHhc
Confidence 99864
No 40
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=98.85 E-value=1.8e-08 Score=96.30 Aligned_cols=114 Identities=17% Similarity=0.233 Sum_probs=82.5
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcEE
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFV 725 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpiI 725 (844)
..+++||++|+ ...+..|..|+.+++++|||+|+++ ...+.+....++.+.+.....+.|+|
T Consensus 49 ~~l~i~Dt~G~-~~~~~~~~~~~~~~~~~ilv~d~~~-----------------~~s~~~~~~~~~~i~~~~~~~~~pii 110 (163)
T cd04136 49 CMLEILDTAGT-EQFTAMRDLYIKNGQGFVLVYSITS-----------------QSSFNDLQDLREQILRVKDTENVPMV 110 (163)
T ss_pred EEEEEEECCCc-cccchHHHHHhhcCCEEEEEEECCC-----------------HHHHHHHHHHHHHHHHhcCCCCCCEE
Confidence 57889999999 7888899999999999999999985 23345556666666665444679999
Q ss_pred EEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHHHHH
Q 042025 726 LILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVDEAF 805 (844)
Q Consensus 726 LfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~evF 805 (844)
|++||.|+..++ .+. .+.+.. +... . .+-++.+||.++.+|.++|
T Consensus 111 lv~nK~Dl~~~~----~~~--------------------~~~~~~-----~~~~---~---~~~~~~~Sa~~~~~v~~l~ 155 (163)
T cd04136 111 LVGNKCDLEDER----VVS--------------------REEGQA-----LARQ---W---GCPFYETSAKSKINVDEVF 155 (163)
T ss_pred EEEECccccccc----eec--------------------HHHHHH-----HHHH---c---CCeEEEecCCCCCCHHHHH
Confidence 999999986421 111 112211 1111 1 1446789999999999999
Q ss_pred HHHHHHH
Q 042025 806 KYIREVL 812 (844)
Q Consensus 806 ~~V~e~I 812 (844)
+++.+.+
T Consensus 156 ~~l~~~~ 162 (163)
T cd04136 156 ADLVRQI 162 (163)
T ss_pred HHHHHhc
Confidence 9998765
No 41
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=98.84 E-value=9e-09 Score=105.53 Aligned_cols=114 Identities=14% Similarity=0.222 Sum_probs=81.7
Q ss_pred CceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcE
Q 042025 645 LTKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPF 724 (844)
Q Consensus 645 ~~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpi 724 (844)
.+++++||++|+ ...+..|..||.+++++|+|+|+++ ...+.......+.|... ..++|+
T Consensus 43 ~~~l~iwDt~G~-e~~~~l~~~~~~~ad~~ilV~D~t~-----------------~~S~~~i~~w~~~i~~~--~~~~pi 102 (200)
T smart00176 43 PIRFNVWDTAGQ-EKFGGLRDGYYIQGQCAIIMFDVTA-----------------RVTYKNVPNWHRDLVRV--CENIPI 102 (200)
T ss_pred EEEEEEEECCCc-hhhhhhhHHHhcCCCEEEEEEECCC-----------------hHHHHHHHHHHHHHHHh--CCCCCE
Confidence 368999999999 7788899999999999999999986 22333344444444443 247999
Q ss_pred EEEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHHHH
Q 042025 725 VLILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVDEA 804 (844)
Q Consensus 725 ILfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~ev 804 (844)
||+.||.|+.... .. .+. .+ +.. .+.+.++.|||+++.+|+++
T Consensus 103 ilvgNK~Dl~~~~-----v~--------------------~~~-~~-----~~~------~~~~~~~e~SAk~~~~v~~~ 145 (200)
T smart00176 103 VLCGNKVDVKDRK-----VK--------------------AKS-IT-----FHR------KKNLQYYDISAKSNYNFEKP 145 (200)
T ss_pred EEEEECccccccc-----CC--------------------HHH-HH-----HHH------HcCCEEEEEeCCCCCCHHHH
Confidence 9999999984321 10 111 11 111 13466788999999999999
Q ss_pred HHHHHHHHhhh
Q 042025 805 FKYIREVLKWD 815 (844)
Q Consensus 805 F~~V~e~Ik~~ 815 (844)
|.|+...|...
T Consensus 146 F~~l~~~i~~~ 156 (200)
T smart00176 146 FLWLARKLIGD 156 (200)
T ss_pred HHHHHHHHHhc
Confidence 99999888654
No 42
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=98.83 E-value=2.5e-08 Score=93.33 Aligned_cols=115 Identities=15% Similarity=0.311 Sum_probs=85.0
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcEE
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFV 725 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpiI 725 (844)
..+.+||++|+ ...+..|.+++.+++++|||+|+++. ..+......+..++....+.+.|++
T Consensus 44 ~~~~~~D~~g~-~~~~~~~~~~~~~~d~ii~v~d~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~p~i 105 (159)
T cd04159 44 VTLKVWDLGGQ-PRFRSMWERYCRGVNAIVYVVDAADR-----------------TALEAAKNELHDLLEKPSLEGIPLL 105 (159)
T ss_pred EEEEEEECCCC-HhHHHHHHHHHhcCCEEEEEEECCCH-----------------HHHHHHHHHHHHHHcChhhcCCCEE
Confidence 57999999999 78888999999999999999998852 2345566777777777667789999
Q ss_pred EEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHHHHH
Q 042025 726 LILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVDEAF 805 (844)
Q Consensus 726 LfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~evF 805 (844)
|++||.|+..+. . .+.+..+ ..+.. ...+.+.+..+||.++.+|+++|
T Consensus 106 iv~nK~D~~~~~------~--------------------~~~~~~~-----~~~~~-~~~~~~~~~~~Sa~~~~gi~~l~ 153 (159)
T cd04159 106 VLGNKNDLPGAL------S--------------------VDELIEQ-----MNLKS-ITDREVSCYSISCKEKTNIDIVL 153 (159)
T ss_pred EEEeCccccCCc------C--------------------HHHHHHH-----hCccc-ccCCceEEEEEEeccCCChHHHH
Confidence 999999986420 0 1111111 11111 12356778899999999999999
Q ss_pred HHHHH
Q 042025 806 KYIRE 810 (844)
Q Consensus 806 ~~V~e 810 (844)
+|+.+
T Consensus 154 ~~l~~ 158 (159)
T cd04159 154 DWLIK 158 (159)
T ss_pred HHHhh
Confidence 99864
No 43
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.82 E-value=2.8e-09 Score=106.59 Aligned_cols=130 Identities=18% Similarity=0.326 Sum_probs=97.3
Q ss_pred CceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcE
Q 042025 645 LTKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPF 724 (844)
Q Consensus 645 ~~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpi 724 (844)
+++|+.+|+||+ ...|+-|..||-.|++|+|.||..| ..|+.||+..++.+++...+++.|+
T Consensus 63 ~m~ftt~DLGGH-~qArr~wkdyf~~v~~iv~lvda~d-----------------~er~~es~~eld~ll~~e~la~vp~ 124 (193)
T KOG0077|consen 63 GMTFTTFDLGGH-LQARRVWKDYFPQVDAIVYLVDAYD-----------------QERFAESKKELDALLSDESLATVPF 124 (193)
T ss_pred CceEEEEccccH-HHHHHHHHHHHhhhceeEeeeehhh-----------------HHHhHHHHHHHHHHHhHHHHhcCcc
Confidence 378999999999 7899999999999999999999875 6899999999999999999999999
Q ss_pred EEEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHHHH
Q 042025 725 VLILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVDEA 804 (844)
Q Consensus 725 ILfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~ev 804 (844)
+++.||+|+...- ....+.-.-|.-.+++. ++. ..++ ....|++-++.|+-+.+.+.-++
T Consensus 125 lilgnKId~p~a~-se~~l~~~l~l~~~t~~---~~~---------------v~~~-~~~~rp~evfmcsi~~~~gy~e~ 184 (193)
T KOG0077|consen 125 LILGNKIDIPYAA-SEDELRFHLGLSNFTTG---KGK---------------VNLT-DSNVRPLEVFMCSIVRKMGYGEG 184 (193)
T ss_pred eeecccccCCCcc-cHHHHHHHHHHHHHhcc---ccc---------------cccc-CCCCCeEEEEEEEEEccCcccee
Confidence 9999999987641 00001000000011110 000 0010 12368999999999999999999
Q ss_pred HHHHHHHH
Q 042025 805 FKYIREVL 812 (844)
Q Consensus 805 F~~V~e~I 812 (844)
|+|+-..|
T Consensus 185 fkwl~qyi 192 (193)
T KOG0077|consen 185 FKWLSQYI 192 (193)
T ss_pred eeehhhhc
Confidence 99987765
No 44
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=98.80 E-value=3.6e-08 Score=94.74 Aligned_cols=114 Identities=16% Similarity=0.220 Sum_probs=82.1
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcEE
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFV 725 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpiI 725 (844)
..+++||++|+ ...+..|..|+.+++++|||+|+++ .+.+.+....++.+.+.....+.|++
T Consensus 49 ~~l~i~Dt~G~-~~~~~~~~~~~~~ad~~i~v~d~~~-----------------~~s~~~~~~~~~~~~~~~~~~~~piv 110 (163)
T cd04176 49 SVLEILDTAGT-EQFASMRDLYIKNGQGFIVVYSLVN-----------------QQTFQDIKPMRDQIVRVKGYEKVPII 110 (163)
T ss_pred EEEEEEECCCc-ccccchHHHHHhhCCEEEEEEECCC-----------------HHHHHHHHHHHHHHHHhcCCCCCCEE
Confidence 46889999999 7888999999999999999999985 33455566666666665445689999
Q ss_pred EEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHHHHH
Q 042025 726 LILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVDEAF 805 (844)
Q Consensus 726 LfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~evF 805 (844)
|++||.|+..++ ... .+.+.. +... ..+.+..|+|.++.+|.++|
T Consensus 111 iv~nK~Dl~~~~----~~~--------------------~~~~~~-~~~~----------~~~~~~~~Sa~~~~~v~~l~ 155 (163)
T cd04176 111 LVGNKVDLESER----EVS--------------------SAEGRA-LAEE----------WGCPFMETSAKSKTMVNELF 155 (163)
T ss_pred EEEECccchhcC----ccC--------------------HHHHHH-HHHH----------hCCEEEEecCCCCCCHHHHH
Confidence 999999985421 110 111211 1111 12346789999999999999
Q ss_pred HHHHHHH
Q 042025 806 KYIREVL 812 (844)
Q Consensus 806 ~~V~e~I 812 (844)
.|+.+.+
T Consensus 156 ~~l~~~l 162 (163)
T cd04176 156 AEIVRQM 162 (163)
T ss_pred HHHHHhc
Confidence 9997654
No 45
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=98.80 E-value=6.5e-08 Score=96.06 Aligned_cols=123 Identities=13% Similarity=0.166 Sum_probs=78.5
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHH-HHHHcCCCCCCCcE
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELF-EMMIRHPCFKDTPF 724 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LF-esI~n~p~f~~tpi 724 (844)
.++++||++|| ...+..|..+|.+++++|||+|+++ ...+.+....| +.+-.+ ..+.|+
T Consensus 49 ~~l~i~Dt~G~-~~~~~~~~~~~~~a~~~ilv~d~~~-----------------~~s~~~~~~~w~~~i~~~--~~~~pi 108 (175)
T cd01874 49 YTLGLFDTAGQ-EDYDRLRPLSYPQTDVFLVCFSVVS-----------------PSSFENVKEKWVPEITHH--CPKTPF 108 (175)
T ss_pred EEEEEEECCCc-cchhhhhhhhcccCCEEEEEEECCC-----------------HHHHHHHHHHHHHHHHHh--CCCCCE
Confidence 57899999999 6777889999999999999999985 22333443323 333322 246899
Q ss_pred EEEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHHHH
Q 042025 725 VLILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVDEA 804 (844)
Q Consensus 725 ILfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~ev 804 (844)
||+.||.|+..++.....+... .-..+ . .+++.++. . . .+.+.++.|||+++.||+++
T Consensus 109 ilvgnK~Dl~~~~~~~~~l~~~----~~~~v-----~---~~~~~~~a-----~---~--~~~~~~~e~SA~tg~~v~~~ 166 (175)
T cd01874 109 LLVGTQIDLRDDPSTIEKLAKN----KQKPI-----T---PETGEKLA-----R---D--LKAVKYVECSALTQKGLKNV 166 (175)
T ss_pred EEEEECHhhhhChhhHHHhhhc----cCCCc-----C---HHHHHHHH-----H---H--hCCcEEEEecCCCCCCHHHH
Confidence 9999999986542111111110 00000 0 23333221 1 1 13466889999999999999
Q ss_pred HHHHHH
Q 042025 805 FKYIRE 810 (844)
Q Consensus 805 F~~V~e 810 (844)
|+.+..
T Consensus 167 f~~~~~ 172 (175)
T cd01874 167 FDEAIL 172 (175)
T ss_pred HHHHHH
Confidence 987765
No 46
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=98.80 E-value=6.2e-08 Score=93.98 Aligned_cols=114 Identities=13% Similarity=0.121 Sum_probs=80.1
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcEE
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFV 725 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpiI 725 (844)
.++++||++|+ ...+..|..+|.+++++|||+|+++ ...++....+++.+.+.. -.++|++
T Consensus 51 ~~l~i~Dt~G~-~~~~~~~~~~~~~~~~~ilv~d~~~-----------------~~s~~~~~~~~~~~~~~~-~~~~~ii 111 (166)
T cd04122 51 IKLQIWDTAGQ-ERFRAVTRSYYRGAAGALMVYDITR-----------------RSTYNHLSSWLTDARNLT-NPNTVIF 111 (166)
T ss_pred EEEEEEECCCc-HHHHHHHHHHhcCCCEEEEEEECCC-----------------HHHHHHHHHHHHHHHHhC-CCCCeEE
Confidence 57899999999 7778889999999999999999985 223334444444443321 2468999
Q ss_pred EEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHHHHH
Q 042025 726 LILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVDEAF 805 (844)
Q Consensus 726 LfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~evF 805 (844)
|+.||.|+..++ .+. .+++.++.. ...+.++.|||.++.||+++|
T Consensus 112 iv~nK~Dl~~~~----~~~--------------------~~~~~~~~~-----------~~~~~~~e~Sa~~~~~i~e~f 156 (166)
T cd04122 112 LIGNKADLEAQR----DVT--------------------YEEAKQFAD-----------ENGLLFLECSAKTGENVEDAF 156 (166)
T ss_pred EEEECccccccc----CcC--------------------HHHHHHHHH-----------HcCCEEEEEECCCCCCHHHHH
Confidence 999999996531 111 123322211 123457789999999999999
Q ss_pred HHHHHHHh
Q 042025 806 KYIREVLK 813 (844)
Q Consensus 806 ~~V~e~Ik 813 (844)
.++...+.
T Consensus 157 ~~l~~~~~ 164 (166)
T cd04122 157 LETAKKIY 164 (166)
T ss_pred HHHHHHHh
Confidence 99987664
No 47
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.77 E-value=5.4e-08 Score=98.24 Aligned_cols=118 Identities=12% Similarity=0.137 Sum_probs=83.1
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHH---cCCCCCCC
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMI---RHPCFKDT 722 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~---n~p~f~~t 722 (844)
+.+++||++|+ ...+..|..+|.+++++|||+|+++ ...+.++...++.+- ..+.-.+.
T Consensus 50 ~~l~l~Dt~G~-~~~~~~~~~~~~~a~~~ilv~D~t~-----------------~~s~~~~~~~~~~i~~~~~~~~~~~~ 111 (201)
T cd04107 50 VRLQLWDIAGQ-ERFGGMTRVYYRGAVGAIIVFDVTR-----------------PSTFEAVLKWKADLDSKVTLPNGEPI 111 (201)
T ss_pred EEEEEEECCCc-hhhhhhHHHHhCCCCEEEEEEECCC-----------------HHHHHHHHHHHHHHHHhhcccCCCCC
Confidence 57899999999 7788899999999999999999885 334555544444433 22333578
Q ss_pred cEEEEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHH
Q 042025 723 PFVLILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVD 802 (844)
Q Consensus 723 piILfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~ 802 (844)
|+||++||.|+..++ ... .+++.+|. ... .-+.++.|||+++.+|+
T Consensus 112 piilv~NK~Dl~~~~----~~~--------------------~~~~~~~~-----~~~-----~~~~~~e~Sak~~~~v~ 157 (201)
T cd04107 112 PCLLLANKCDLKKRL----AKD--------------------GEQMDQFC-----KEN-----GFIGWFETSAKEGINIE 157 (201)
T ss_pred cEEEEEECCCccccc----ccC--------------------HHHHHHHH-----HHc-----CCceEEEEeCCCCCCHH
Confidence 999999999996421 010 12333322 111 11457889999999999
Q ss_pred HHHHHHHHHHhhh
Q 042025 803 EAFKYIREVLKWD 815 (844)
Q Consensus 803 evF~~V~e~Ik~~ 815 (844)
++|+||.+.+...
T Consensus 158 e~f~~l~~~l~~~ 170 (201)
T cd04107 158 EAMRFLVKNILAN 170 (201)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999887654
No 48
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=98.77 E-value=6e-08 Score=102.61 Aligned_cols=123 Identities=13% Similarity=0.126 Sum_probs=89.2
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCC-------
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPC------- 718 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~------- 718 (844)
+.+++||++|+ ...+..|..++.+++++|||+|+++ ...+++...+++.|....+
T Consensus 48 ~~l~I~Dt~G~-~~~~~~~~~~~~~ad~iIlVfdv~~-----------------~~Sf~~i~~~~~~I~~~k~~~~~~~~ 109 (247)
T cd04143 48 YQLDILDTSGN-HPFPAMRRLSILTGDVFILVFSLDN-----------------RESFEEVCRLREQILETKSCLKNKTK 109 (247)
T ss_pred EEEEEEECCCC-hhhhHHHHHHhccCCEEEEEEeCCC-----------------HHHHHHHHHHHHHHHHhhcccccccc
Confidence 57889999999 6767777788999999999999885 3446666777777776543
Q ss_pred -CCCCcEEEEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecC
Q 042025 719 -FKDTPFVLILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARD 797 (844)
Q Consensus 719 -f~~tpiILfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtD 797 (844)
..+.|+||++||.|+..++ .+. .+++.+++. . ...+.++.|||++
T Consensus 110 ~~~~~piIivgNK~Dl~~~~----~v~--------------------~~ei~~~~~-----~-----~~~~~~~evSAkt 155 (247)
T cd04143 110 ENVKIPMVICGNKADRDFPR----EVQ--------------------RDEVEQLVG-----G-----DENCAYFEVSAKK 155 (247)
T ss_pred cCCCCcEEEEEECccchhcc----ccC--------------------HHHHHHHHH-----h-----cCCCEEEEEeCCC
Confidence 3579999999999997521 111 233333221 1 1246688999999
Q ss_pred CCCHHHHHHHHHHHHhhhhhccc
Q 042025 798 RVTVDEAFKYIREVLKWDDEKED 820 (844)
Q Consensus 798 te~I~evF~~V~e~Ik~~~~k~~ 820 (844)
+.+|+++|++|.+...-..+..-
T Consensus 156 g~gI~elf~~L~~~~~~p~e~~~ 178 (247)
T cd04143 156 NSNLDEMFRALFSLAKLPNEMSP 178 (247)
T ss_pred CCCHHHHHHHHHHHhccccccCc
Confidence 99999999999987755555443
No 49
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=98.76 E-value=4.7e-08 Score=95.69 Aligned_cols=116 Identities=17% Similarity=0.235 Sum_probs=83.2
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcEE
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFV 725 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpiI 725 (844)
+++++||++|| ...+..|..++.+++++|||+|+++ ...+......+..+..+....+.|++
T Consensus 63 ~~~~i~Dt~G~-~~~~~~~~~~~~~~~~~i~v~d~~~-----------------~~s~~~~~~~~~~i~~~~~~~~~pii 124 (180)
T cd04127 63 IHLQLWDTAGQ-ERFRSLTTAFFRDAMGFLLIFDLTN-----------------EQSFLNVRNWMSQLQTHAYCENPDIV 124 (180)
T ss_pred EEEEEEeCCCh-HHHHHHHHHHhCCCCEEEEEEECCC-----------------HHHHHHHHHHHHHHHHhcCCCCCcEE
Confidence 57899999999 6777889999999999999999885 23344445555566555445578999
Q ss_pred EEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHHHHH
Q 042025 726 LILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVDEAF 805 (844)
Q Consensus 726 LfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~evF 805 (844)
|++||.|+..++ +.+ .+++.+|. ++ . .+.++.+||.++.+++++|
T Consensus 125 iv~nK~Dl~~~~----~v~--------------------~~~~~~~~-~~----~------~~~~~e~Sak~~~~v~~l~ 169 (180)
T cd04127 125 LCGNKADLEDQR----QVS--------------------EEQAKALA-DK----Y------GIPYFETSAATGTNVEKAV 169 (180)
T ss_pred EEEeCccchhcC----ccC--------------------HHHHHHHH-HH----c------CCeEEEEeCCCCCCHHHHH
Confidence 999999986531 111 12232221 11 1 2347899999999999999
Q ss_pred HHHHHHHhh
Q 042025 806 KYIREVLKW 814 (844)
Q Consensus 806 ~~V~e~Ik~ 814 (844)
+++.+.+..
T Consensus 170 ~~l~~~~~~ 178 (180)
T cd04127 170 ERLLDLVMK 178 (180)
T ss_pred HHHHHHHHh
Confidence 999887643
No 50
>PTZ00369 Ras-like protein; Provisional
Probab=98.75 E-value=1.1e-07 Score=94.99 Aligned_cols=117 Identities=15% Similarity=0.166 Sum_probs=84.1
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcEE
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFV 725 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpiI 725 (844)
..+++||++|+ ...+..|..|+.+++++|+|+|+++ ...+.+....++.+.+.....+.|+|
T Consensus 53 ~~l~i~Dt~G~-~~~~~l~~~~~~~~d~iilv~D~s~-----------------~~s~~~~~~~~~~i~~~~~~~~~pii 114 (189)
T PTZ00369 53 CLLDILDTAGQ-EEYSAMRDQYMRTGQGFLCVYSITS-----------------RSSFEEIASFREQILRVKDKDRVPMI 114 (189)
T ss_pred EEEEEEeCCCC-ccchhhHHHHhhcCCEEEEEEECCC-----------------HHHHHHHHHHHHHHHHhcCCCCCCEE
Confidence 57889999999 7888899999999999999999985 23344555555566554334578999
Q ss_pred EEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHHHHH
Q 042025 726 LILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVDEAF 805 (844)
Q Consensus 726 LfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~evF 805 (844)
|+.||.|+..+ .++. .+.+..+ ... ..+.+..|||.++.||.++|
T Consensus 115 iv~nK~Dl~~~----~~i~--------------------~~~~~~~-----~~~------~~~~~~e~Sak~~~gi~~~~ 159 (189)
T PTZ00369 115 LVGNKCDLDSE----RQVS--------------------TGEGQEL-----AKS------FGIPFLETSAKQRVNVDEAF 159 (189)
T ss_pred EEEECcccccc----cccC--------------------HHHHHHH-----HHH------hCCEEEEeeCCCCCCHHHHH
Confidence 99999998542 1111 1222222 111 12346789999999999999
Q ss_pred HHHHHHHhhh
Q 042025 806 KYIREVLKWD 815 (844)
Q Consensus 806 ~~V~e~Ik~~ 815 (844)
.|+.+.+...
T Consensus 160 ~~l~~~l~~~ 169 (189)
T PTZ00369 160 YELVREIRKY 169 (189)
T ss_pred HHHHHHHHHH
Confidence 9999887655
No 51
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=98.75 E-value=9.1e-08 Score=90.70 Aligned_cols=113 Identities=18% Similarity=0.180 Sum_probs=79.9
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcEE
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFV 725 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpiI 725 (844)
..+++||++|+ ...+..|.+|+.+++++++|+|+++ ...+.+....+..+.......+.|++
T Consensus 49 ~~~~i~Dt~G~-~~~~~l~~~~~~~~~~~i~v~~~~~-----------------~~s~~~~~~~~~~i~~~~~~~~~pii 110 (162)
T cd04138 49 CLLDILDTAGQ-EEYSAMRDQYMRTGEGFLCVFAINS-----------------RKSFEDIHTYREQIKRVKDSDDVPMV 110 (162)
T ss_pred EEEEEEECCCC-cchHHHHHHHHhcCCEEEEEEECCC-----------------HHHHHHHHHHHHHHHHhcCCCCCCEE
Confidence 46889999999 7788899999999999999999885 22334444555666554444678999
Q ss_pred EEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHHHHH
Q 042025 726 LILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVDEAF 805 (844)
Q Consensus 726 LfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~evF 805 (844)
|++||.|+.... .. ..++..+. .. ..+.+..|||.++.||+++|
T Consensus 111 vv~nK~Dl~~~~-----~~--------------------~~~~~~~~----~~-------~~~~~~~~Sa~~~~gi~~l~ 154 (162)
T cd04138 111 LVGNKCDLAART-----VS--------------------SRQGQDLA----KS-------YGIPYIETSAKTRQGVEEAF 154 (162)
T ss_pred EEEECcccccce-----ec--------------------HHHHHHHH----HH-------hCCeEEEecCCCCCCHHHHH
Confidence 999999986521 10 12222211 11 12346789999999999999
Q ss_pred HHHHHHH
Q 042025 806 KYIREVL 812 (844)
Q Consensus 806 ~~V~e~I 812 (844)
+++.+.+
T Consensus 155 ~~l~~~~ 161 (162)
T cd04138 155 YTLVREI 161 (162)
T ss_pred HHHHHHh
Confidence 9998654
No 52
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=98.74 E-value=7.6e-08 Score=96.35 Aligned_cols=121 Identities=12% Similarity=0.153 Sum_probs=81.1
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcEE
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFV 725 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpiI 725 (844)
+.+++||++|+ ...+..|..+|.+++++|||+|+++- + ..+.+.+-+..+..+.. ....+.|+|
T Consensus 47 ~~l~i~Dt~G~-~~~~~~~~~~~~~ad~~ilv~d~~~~-------~-------s~~~~~~~~~~i~~~~~-~~~~~~pii 110 (190)
T cd04144 47 CMLEVLDTAGQ-EEYTALRDQWIREGEGFILVYSITSR-------S-------TFERVERFREQIQRVKD-ESAADVPIM 110 (190)
T ss_pred EEEEEEECCCc-hhhHHHHHHHHHhCCEEEEEEECCCH-------H-------HHHHHHHHHHHHHHHhc-ccCCCCCEE
Confidence 57899999999 77888899999999999999999851 1 12333333333333322 223578999
Q ss_pred EEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHHHHH
Q 042025 726 LILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVDEAF 805 (844)
Q Consensus 726 LfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~evF 805 (844)
|++||.|+..++ .+. .+.+.+ |... ..+.+..+||.++.||+++|
T Consensus 111 lvgNK~Dl~~~~----~v~--------------------~~~~~~-----~~~~------~~~~~~e~SAk~~~~v~~l~ 155 (190)
T cd04144 111 IVGNKCDKVYER----EVS--------------------TEEGAA-----LARR------LGCEFIEASAKTNVNVERAF 155 (190)
T ss_pred EEEEChhccccC----ccC--------------------HHHHHH-----HHHH------hCCEEEEecCCCCCCHHHHH
Confidence 999999986531 111 122222 1111 12346789999999999999
Q ss_pred HHHHHHHhhhhh
Q 042025 806 KYIREVLKWDDE 817 (844)
Q Consensus 806 ~~V~e~Ik~~~~ 817 (844)
.++.+.+.....
T Consensus 156 ~~l~~~l~~~~~ 167 (190)
T cd04144 156 YTLVRALRQQRQ 167 (190)
T ss_pred HHHHHHHHHhhc
Confidence 999988754433
No 53
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=98.74 E-value=9.3e-08 Score=91.43 Aligned_cols=114 Identities=16% Similarity=0.245 Sum_probs=81.4
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcEE
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFV 725 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpiI 725 (844)
.++++||+.|+ ...+..|..++.+++++|||+|+++ ...+.+...+++.+.+...-.+.|+|
T Consensus 50 ~~~~i~Dt~G~-~~~~~~~~~~~~~~~~~ilv~d~~~-----------------~~s~~~~~~~~~~~~~~~~~~~~pii 111 (164)
T cd04145 50 AILDILDTAGQ-EEFSAMREQYMRTGEGFLLVFSVTD-----------------RGSFEEVDKFHTQILRVKDRDEFPMI 111 (164)
T ss_pred EEEEEEECCCC-cchhHHHHHHHhhCCEEEEEEECCC-----------------HHHHHHHHHHHHHHHHHhCCCCCCEE
Confidence 57899999999 7777888899999999999999985 23345555666666654334578999
Q ss_pred EEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHHHHH
Q 042025 726 LILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVDEAF 805 (844)
Q Consensus 726 LfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~evF 805 (844)
|++||.|+..++ .+. .+.+.++. .- ..+.+..+||.++.+|+++|
T Consensus 112 iv~NK~Dl~~~~----~~~--------------------~~~~~~~~-----~~------~~~~~~~~Sa~~~~~i~~l~ 156 (164)
T cd04145 112 LVGNKADLEHQR----KVS--------------------REEGQELA-----RK------LKIPYIETSAKDRLNVDKAF 156 (164)
T ss_pred EEeeCccccccc----eec--------------------HHHHHHHH-----HH------cCCcEEEeeCCCCCCHHHHH
Confidence 999999986531 111 12222222 11 11346789999999999999
Q ss_pred HHHHHHH
Q 042025 806 KYIREVL 812 (844)
Q Consensus 806 ~~V~e~I 812 (844)
+++.+.+
T Consensus 157 ~~l~~~~ 163 (164)
T cd04145 157 HDLVRVI 163 (164)
T ss_pred HHHHHhh
Confidence 9998764
No 54
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=98.74 E-value=1.2e-07 Score=94.17 Aligned_cols=125 Identities=14% Similarity=0.172 Sum_probs=78.4
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcEE
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFV 725 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpiI 725 (844)
.++++||++|+ ...+..|..+|.+++++|||+|+++ .+.+.+....|...+... ..+.|+|
T Consensus 49 ~~l~i~Dt~G~-~~~~~~~~~~~~~~d~~ilv~d~~~-----------------~~sf~~~~~~~~~~~~~~-~~~~pii 109 (174)
T cd01871 49 VNLGLWDTAGQ-EDYDRLRPLSYPQTDVFLICFSLVS-----------------PASFENVRAKWYPEVRHH-CPNTPII 109 (174)
T ss_pred EEEEEEECCCc-hhhhhhhhhhcCCCCEEEEEEECCC-----------------HHHHHHHHHHHHHHHHHh-CCCCCEE
Confidence 57899999999 7778899999999999999999985 233444433232222221 2478999
Q ss_pred EEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHHHHH
Q 042025 726 LILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVDEAF 805 (844)
Q Consensus 726 LfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~evF 805 (844)
|+.||.|+...+.....+... .. ..+ . .+++.++.. + + +.+-++.|||.++++|+++|
T Consensus 110 lvgnK~Dl~~~~~~~~~~~~~--~~--~~v-----~---~~~~~~~~~-~---~------~~~~~~e~Sa~~~~~i~~~f 167 (174)
T cd01871 110 LVGTKLDLRDDKDTIEKLKEK--KL--TPI-----T---YPQGLAMAK-E---I------GAVKYLECSALTQKGLKTVF 167 (174)
T ss_pred EEeeChhhccChhhHHHHhhc--cC--CCC-----C---HHHHHHHHH-H---c------CCcEEEEecccccCCHHHHH
Confidence 999999996543211111100 00 000 0 233332211 1 1 12346789999999999999
Q ss_pred HHHHHH
Q 042025 806 KYIREV 811 (844)
Q Consensus 806 ~~V~e~ 811 (844)
+.+...
T Consensus 168 ~~l~~~ 173 (174)
T cd01871 168 DEAIRA 173 (174)
T ss_pred HHHHHh
Confidence 988653
No 55
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=98.73 E-value=1.6e-07 Score=94.25 Aligned_cols=123 Identities=15% Similarity=0.142 Sum_probs=79.4
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHH-HHHHHHHcCCCCCCCcE
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSK-ELFEMMIRHPCFKDTPF 724 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl-~LFesI~n~p~f~~tpi 724 (844)
+++++||++|| ...+..|..+|.+++++|+|.|+++ .+-++... ..+..+-+.. .+.|+
T Consensus 49 v~l~i~Dt~G~-~~~~~~~~~~~~~a~~~ilvyd~~~-----------------~~Sf~~~~~~w~~~i~~~~--~~~pi 108 (176)
T cd04133 49 VNLGLWDTAGQ-EDYNRLRPLSYRGADVFVLAFSLIS-----------------RASYENVLKKWVPELRHYA--PNVPI 108 (176)
T ss_pred EEEEEEECCCC-ccccccchhhcCCCcEEEEEEEcCC-----------------HHHHHHHHHHHHHHHHHhC--CCCCE
Confidence 68999999999 7888889999999999999999985 22333332 3344443332 37899
Q ss_pred EEEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHHHH
Q 042025 725 VLILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVDEA 804 (844)
Q Consensus 725 ILfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~ev 804 (844)
||+.||.||.+++-. +... |.-.. -. .+++.+|- + .. + ..-...|||.++.+|+++
T Consensus 109 ilvgnK~Dl~~~~~~--~~~~----~~~~~-----v~---~~~~~~~a-----~---~~-~-~~~~~E~SAk~~~nV~~~ 164 (176)
T cd04133 109 VLVGTKLDLRDDKQY--LADH----PGASP-----IT---TAQGEELR-----K---QI-G-AAAYIECSSKTQQNVKAV 164 (176)
T ss_pred EEEEeChhhccChhh--hhhc----cCCCC-----CC---HHHHHHHH-----H---Hc-C-CCEEEECCCCcccCHHHH
Confidence 999999999764311 0000 00000 00 23333321 1 11 1 113568999999999999
Q ss_pred HHHHHHHH
Q 042025 805 FKYIREVL 812 (844)
Q Consensus 805 F~~V~e~I 812 (844)
|+.+.+.+
T Consensus 165 F~~~~~~~ 172 (176)
T cd04133 165 FDAAIKVV 172 (176)
T ss_pred HHHHHHHH
Confidence 99998765
No 56
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=98.69 E-value=1.4e-07 Score=94.69 Aligned_cols=119 Identities=17% Similarity=0.236 Sum_probs=78.8
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcEE
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFV 725 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpiI 725 (844)
+.+++||++|+ ...+..|..++.+++++|||+|+++ ...+.+....++.+..... ...| |
T Consensus 49 ~~l~iwDt~G~-~~~~~~~~~~~~~a~~iilv~D~t~-----------------~~s~~~i~~~~~~~~~~~~-~~~p-i 108 (182)
T cd04128 49 ITFSIWDLGGQ-REFINMLPLVCNDAVAILFMFDLTR-----------------KSTLNSIKEWYRQARGFNK-TAIP-I 108 (182)
T ss_pred EEEEEEeCCCc-hhHHHhhHHHCcCCCEEEEEEECcC-----------------HHHHHHHHHHHHHHHHhCC-CCCE-E
Confidence 67999999999 7778899999999999999999985 2334444455555544321 3456 5
Q ss_pred EEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHHHHH
Q 042025 726 LILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVDEAF 805 (844)
Q Consensus 726 LfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~evF 805 (844)
|+.||.|+..+ +.. . ......+++. +|.+. ..+-++.|||.++.||+++|
T Consensus 109 lVgnK~Dl~~~------~~~-------~------~~~~~~~~~~-----~~a~~------~~~~~~e~SAk~g~~v~~lf 158 (182)
T cd04128 109 LVGTKYDLFAD------LPP-------E------EQEEITKQAR-----KYAKA------MKAPLIFCSTSHSINVQKIF 158 (182)
T ss_pred EEEEchhcccc------ccc-------h------hhhhhHHHHH-----HHHHH------cCCEEEEEeCCCCCCHHHHH
Confidence 77999999642 110 0 0000011111 12211 12446789999999999999
Q ss_pred HHHHHHHhh
Q 042025 806 KYIREVLKW 814 (844)
Q Consensus 806 ~~V~e~Ik~ 814 (844)
+++.+.+..
T Consensus 159 ~~l~~~l~~ 167 (182)
T cd04128 159 KIVLAKAFD 167 (182)
T ss_pred HHHHHHHHh
Confidence 999987753
No 57
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=98.69 E-value=1.6e-07 Score=97.01 Aligned_cols=114 Identities=15% Similarity=0.206 Sum_probs=81.5
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcEE
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFV 725 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpiI 725 (844)
+++++||++|+ ...+..|..||.+++++|||+|+++ ...+......++.|... ..+.|++
T Consensus 62 ~~l~i~Dt~G~-~~~~~~~~~~~~~~~~~ilvfD~~~-----------------~~s~~~i~~w~~~i~~~--~~~~pii 121 (219)
T PLN03071 62 IRFYCWDTAGQ-EKFGGLRDGYYIHGQCAIIMFDVTA-----------------RLTYKNVPTWHRDLCRV--CENIPIV 121 (219)
T ss_pred EEEEEEECCCc-hhhhhhhHHHcccccEEEEEEeCCC-----------------HHHHHHHHHHHHHHHHh--CCCCcEE
Confidence 68999999999 7788899999999999999999985 22333334445555433 2578999
Q ss_pred EEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHHHHH
Q 042025 726 LILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVDEAF 805 (844)
Q Consensus 726 LfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~evF 805 (844)
|+.||.|+.... .. .+.+ . |... +.+.++.|||.++.+|+++|
T Consensus 122 lvgNK~Dl~~~~-----v~--------------------~~~~-~-----~~~~------~~~~~~e~SAk~~~~i~~~f 164 (219)
T PLN03071 122 LCGNKVDVKNRQ-----VK--------------------AKQV-T-----FHRK------KNLQYYEISAKSNYNFEKPF 164 (219)
T ss_pred EEEEchhhhhcc-----CC--------------------HHHH-H-----HHHh------cCCEEEEcCCCCCCCHHHHH
Confidence 999999985321 00 1111 2 2111 23446789999999999999
Q ss_pred HHHHHHHhhhh
Q 042025 806 KYIREVLKWDD 816 (844)
Q Consensus 806 ~~V~e~Ik~~~ 816 (844)
.|+.+.+....
T Consensus 165 ~~l~~~~~~~~ 175 (219)
T PLN03071 165 LYLARKLAGDP 175 (219)
T ss_pred HHHHHHHHcCc
Confidence 99998886543
No 58
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=98.67 E-value=2.3e-07 Score=89.60 Aligned_cols=114 Identities=16% Similarity=0.207 Sum_probs=80.3
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcEE
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFV 725 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpiI 725 (844)
..+++||++|+ ......|..+|.+++++|||+|+++ .+.+.+..++++.+-... -.+.|++
T Consensus 51 ~~~~i~D~~G~-~~~~~~~~~~~~~~~~ii~v~d~~~-----------------~~s~~~l~~~~~~~~~~~-~~~~~~i 111 (166)
T cd01869 51 IKLQIWDTAGQ-ERFRTITSSYYRGAHGIIIVYDVTD-----------------QESFNNVKQWLQEIDRYA-SENVNKL 111 (166)
T ss_pred EEEEEEECCCc-HhHHHHHHHHhCcCCEEEEEEECcC-----------------HHHHHhHHHHHHHHHHhC-CCCCcEE
Confidence 57899999999 6777889999999999999999985 223444444455443321 2468999
Q ss_pred EEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHHHHH
Q 042025 726 LILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVDEAF 805 (844)
Q Consensus 726 LfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~evF 805 (844)
|++||.|+..++ ++. .+++..+. .. ..+.++.+||.++.+|+++|
T Consensus 112 iv~nK~Dl~~~~----~~~--------------------~~~~~~~~-----~~------~~~~~~~~Sa~~~~~v~~~~ 156 (166)
T cd01869 112 LVGNKCDLTDKR----VVD--------------------YSEAQEFA-----DE------LGIPFLETSAKNATNVEQAF 156 (166)
T ss_pred EEEEChhccccc----CCC--------------------HHHHHHHH-----HH------cCCeEEEEECCCCcCHHHHH
Confidence 999999986531 111 22332222 11 12347889999999999999
Q ss_pred HHHHHHHh
Q 042025 806 KYIREVLK 813 (844)
Q Consensus 806 ~~V~e~Ik 813 (844)
.++.+.++
T Consensus 157 ~~i~~~~~ 164 (166)
T cd01869 157 MTMAREIK 164 (166)
T ss_pred HHHHHHHH
Confidence 99998875
No 59
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=98.67 E-value=1.4e-07 Score=91.64 Aligned_cols=114 Identities=11% Similarity=0.219 Sum_probs=80.5
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcEE
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFV 725 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpiI 725 (844)
..+++||++|+ ...+..|..+|.+++++|||+|+++ .+.+.+....++.+... ...+.|++
T Consensus 50 ~~~~l~Dt~g~-~~~~~~~~~~~~~~~~~l~v~d~~~-----------------~~s~~~~~~~~~~i~~~-~~~~~pii 110 (165)
T cd01865 50 VKLQIWDTAGQ-ERYRTITTAYYRGAMGFILMYDITN-----------------EESFNAVQDWSTQIKTY-SWDNAQVI 110 (165)
T ss_pred EEEEEEECCCh-HHHHHHHHHHccCCcEEEEEEECCC-----------------HHHHHHHHHHHHHHHHh-CCCCCCEE
Confidence 57899999999 6778889999999999999999874 23344455555555432 23468999
Q ss_pred EEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHHHHH
Q 042025 726 LILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVDEAF 805 (844)
Q Consensus 726 LfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~evF 805 (844)
|+.||.|+.+++ ... .+.+.++. .. ..+.++.|||.++.||.++|
T Consensus 111 vv~nK~Dl~~~~----~~~--------------------~~~~~~~~-----~~------~~~~~~~~Sa~~~~gv~~l~ 155 (165)
T cd01865 111 LVGNKCDMEDER----VVS--------------------SERGRQLA-----DQ------LGFEFFEASAKENINVKQVF 155 (165)
T ss_pred EEEECcccCccc----ccC--------------------HHHHHHHH-----HH------cCCEEEEEECCCCCCHHHHH
Confidence 999999996532 010 12222211 11 12357889999999999999
Q ss_pred HHHHHHHh
Q 042025 806 KYIREVLK 813 (844)
Q Consensus 806 ~~V~e~Ik 813 (844)
+++.+.+-
T Consensus 156 ~~l~~~~~ 163 (165)
T cd01865 156 ERLVDIIC 163 (165)
T ss_pred HHHHHHHH
Confidence 99988764
No 60
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=98.66 E-value=2.5e-07 Score=89.97 Aligned_cols=115 Identities=15% Similarity=0.198 Sum_probs=80.5
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcEE
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFV 725 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpiI 725 (844)
..+++||++|+ ......|.+++.+++++|||+|+++ ...+.+..+.+..+.... -.+.|++
T Consensus 52 ~~l~l~D~~g~-~~~~~~~~~~~~~ad~~i~v~d~~~-----------------~~s~~~~~~~~~~i~~~~-~~~~p~i 112 (167)
T cd01867 52 IKLQIWDTAGQ-ERFRTITTAYYRGAMGIILVYDITD-----------------EKSFENIRNWMRNIEEHA-SEDVERM 112 (167)
T ss_pred EEEEEEeCCch-HHHHHHHHHHhCCCCEEEEEEECcC-----------------HHHHHhHHHHHHHHHHhC-CCCCcEE
Confidence 57899999999 6777889999999999999999875 122333344444444321 2468999
Q ss_pred EEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHHHHH
Q 042025 726 LILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVDEAF 805 (844)
Q Consensus 726 LfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~evF 805 (844)
|+.||.|+.+++ ... .+++.++.. . ..+.++.+||..+.+|+++|
T Consensus 113 iv~nK~Dl~~~~----~~~--------------------~~~~~~~~~----~-------~~~~~~~~Sa~~~~~v~~~~ 157 (167)
T cd01867 113 LVGNKCDMEEKR----VVS--------------------KEEGEALAD----E-------YGIKFLETSAKANINVEEAF 157 (167)
T ss_pred EEEECccccccc----CCC--------------------HHHHHHHHH----H-------cCCEEEEEeCCCCCCHHHHH
Confidence 999999997531 110 223322221 1 12346899999999999999
Q ss_pred HHHHHHHhh
Q 042025 806 KYIREVLKW 814 (844)
Q Consensus 806 ~~V~e~Ik~ 814 (844)
.++.+.+..
T Consensus 158 ~~i~~~~~~ 166 (167)
T cd01867 158 FTLAKDIKK 166 (167)
T ss_pred HHHHHHHHh
Confidence 999988754
No 61
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=98.66 E-value=2.4e-07 Score=88.97 Aligned_cols=115 Identities=19% Similarity=0.252 Sum_probs=82.0
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcEE
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFV 725 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpiI 725 (844)
..+++||++|+ ...+..|..++.+++++|||+|+++ ...+.+....++.+.+.....+.|+|
T Consensus 48 ~~l~i~Dt~g~-~~~~~~~~~~~~~~~~~i~v~d~~~-----------------~~s~~~~~~~~~~i~~~~~~~~~pii 109 (164)
T smart00173 48 CLLDILDTAGQ-EEFSAMRDQYMRTGEGFLLVYSITD-----------------RQSFEEIKKFREQILRVKDRDDVPIV 109 (164)
T ss_pred EEEEEEECCCc-ccchHHHHHHHhhCCEEEEEEECCC-----------------HHHHHHHHHHHHHHHHhcCCCCCCEE
Confidence 57899999999 7778889999999999999999875 22344455555555554444578999
Q ss_pred EEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHHHHH
Q 042025 726 LILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVDEAF 805 (844)
Q Consensus 726 LfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~evF 805 (844)
|+.||.|+..++ .+. .+.+.++. ... .+.+..+||+++.+|+++|
T Consensus 110 ~v~nK~Dl~~~~----~~~--------------------~~~~~~~~-----~~~------~~~~~~~Sa~~~~~i~~l~ 154 (164)
T smart00173 110 LVGNKCDLESER----VVS--------------------TEEGKELA-----RQW------GCPFLETSAKERVNVDEAF 154 (164)
T ss_pred EEEECccccccc----eEc--------------------HHHHHHHH-----HHc------CCEEEEeecCCCCCHHHHH
Confidence 999999986431 111 12222222 111 1346889999999999999
Q ss_pred HHHHHHHh
Q 042025 806 KYIREVLK 813 (844)
Q Consensus 806 ~~V~e~Ik 813 (844)
+++.+.+.
T Consensus 155 ~~l~~~~~ 162 (164)
T smart00173 155 YDLVREIR 162 (164)
T ss_pred HHHHHHHh
Confidence 99988764
No 62
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=98.66 E-value=3e-07 Score=92.94 Aligned_cols=117 Identities=18% Similarity=0.257 Sum_probs=84.2
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcEE
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFV 725 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpiI 725 (844)
..+.+||++|+ ...+..|.+++.+++++|||+|+++ .+.+.+....++.+.+. ..+.|++
T Consensus 55 ~~l~l~D~~G~-~~~~~~~~~~~~~a~~iilv~D~~~-----------------~~s~~~~~~~~~~i~~~--~~~~pii 114 (199)
T cd04110 55 VKLQIWDTAGQ-ERFRTITSTYYRGTHGVIVVYDVTN-----------------GESFVNVKRWLQEIEQN--CDDVCKV 114 (199)
T ss_pred EEEEEEeCCCc-hhHHHHHHHHhCCCcEEEEEEECCC-----------------HHHHHHHHHHHHHHHHh--CCCCCEE
Confidence 57899999999 7788899999999999999999985 23355555666666553 2468999
Q ss_pred EEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHHHHH
Q 042025 726 LILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVDEAF 805 (844)
Q Consensus 726 LfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~evF 805 (844)
|+.||.|+...+ .+. .+.+.. |... ..+.++.|||.++.+|+++|
T Consensus 115 vVgNK~Dl~~~~----~~~--------------------~~~~~~-----~~~~------~~~~~~e~Sa~~~~gi~~lf 159 (199)
T cd04110 115 LVGNKNDDPERK----VVE--------------------TEDAYK-----FAGQ------MGISLFETSAKENINVEEMF 159 (199)
T ss_pred EEEECccccccc----ccC--------------------HHHHHH-----HHHH------cCCEEEEEECCCCcCHHHHH
Confidence 999999986421 111 122222 1111 12457799999999999999
Q ss_pred HHHHHHHhhhhh
Q 042025 806 KYIREVLKWDDE 817 (844)
Q Consensus 806 ~~V~e~Ik~~~~ 817 (844)
+||...+.....
T Consensus 160 ~~l~~~~~~~~~ 171 (199)
T cd04110 160 NCITELVLRAKK 171 (199)
T ss_pred HHHHHHHHHhhh
Confidence 999987765433
No 63
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=98.65 E-value=3e-07 Score=89.41 Aligned_cols=111 Identities=13% Similarity=0.135 Sum_probs=79.3
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcEE
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFV 725 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpiI 725 (844)
.++++||++|+ ...+..|..||.+++++|||+|+++ .+.+.+....++.+.+. ...+.|++
T Consensus 49 ~~l~i~D~~g~-~~~~~~~~~~~~~~~~~i~v~d~~~-----------------~~sf~~~~~~~~~~~~~-~~~~~~ii 109 (161)
T cd04117 49 VRIQIWDTAGQ-ERYQTITKQYYRRAQGIFLVYDISS-----------------ERSYQHIMKWVSDVDEY-APEGVQKI 109 (161)
T ss_pred EEEEEEeCCCc-HhHHhhHHHHhcCCcEEEEEEECCC-----------------HHHHHHHHHHHHHHHHh-CCCCCeEE
Confidence 67899999999 6777889999999999999999985 34455555556655543 23578999
Q ss_pred EEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHHHHH
Q 042025 726 LILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVDEAF 805 (844)
Q Consensus 726 LfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~evF 805 (844)
|+.||.|+.+++ .+. .+++..+. ... +. .+..|||.++.+|+++|
T Consensus 110 lvgnK~Dl~~~~----~v~--------------------~~~~~~~~-----~~~----~~--~~~e~Sa~~~~~v~~~f 154 (161)
T cd04117 110 LIGNKADEEQKR----QVG--------------------DEQGNKLA-----KEY----GM--DFFETSACTNSNIKESF 154 (161)
T ss_pred EEEECccccccc----CCC--------------------HHHHHHHH-----HHc----CC--EEEEEeCCCCCCHHHHH
Confidence 999999986531 111 12333321 111 12 24789999999999999
Q ss_pred HHHHH
Q 042025 806 KYIRE 810 (844)
Q Consensus 806 ~~V~e 810 (844)
.||.+
T Consensus 155 ~~l~~ 159 (161)
T cd04117 155 TRLTE 159 (161)
T ss_pred HHHHh
Confidence 99875
No 64
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=98.65 E-value=1.7e-07 Score=97.68 Aligned_cols=142 Identities=15% Similarity=0.112 Sum_probs=88.1
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcEE
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFV 725 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpiI 725 (844)
.++.+||++|+ ...+..|..+|.+++++|||+|+++ ...+.+....|..+... ...+.|+|
T Consensus 44 ~~l~iwDt~G~-e~~~~l~~~~~~~ad~~IlV~Dvt~-----------------~~Sf~~l~~~~~~l~~~-~~~~~piI 104 (220)
T cd04126 44 YNISIWDTAGR-EQFHGLGSMYCRGAAAVILTYDVSN-----------------VQSLEELEDRFLGLTDT-ANEDCLFA 104 (220)
T ss_pred EEEEEEeCCCc-ccchhhHHHHhccCCEEEEEEECCC-----------------HHHHHHHHHHHHHHHHh-cCCCCcEE
Confidence 35789999999 7888899999999999999999985 23445555566666653 23568999
Q ss_pred EEecccchhhhhhhc----cccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHh---hhccCCC-CcEEEEEEeecC
Q 042025 726 LILNKYDLFEEKVNR----VHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKD---LYASLTG-RKLFVWQARARD 797 (844)
Q Consensus 726 LfLNK~DLfeeKI~~----spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~---L~~s~~~-Rklyvh~T~AtD 797 (844)
|+.||.||...-... .+... -.... ..+-..+++.+|..+ +.. +...+.. ..+.++.|||.+
T Consensus 105 lVgNK~DL~~~~~~~~~~~~~~~~---~~~~~------~r~v~~~e~~~~a~~-~~~~~~~~~~~~~~~~~~~~E~SA~t 174 (220)
T cd04126 105 VVGNKLDLTEEGALAGQEKDAGDR---VSPED------QRQVTLEDAKAFYKR-INKYKMLDEDLSPAAEKMCFETSAKT 174 (220)
T ss_pred EEEECccccccccccccccccccc---ccccc------cccCCHHHHHHHHHH-hCccccccccccccccceEEEeeCCC
Confidence 999999997532111 00000 00000 000013455554322 211 0000111 224567899999
Q ss_pred CCCHHHHHHHHHHHHhhhh
Q 042025 798 RVTVDEAFKYIREVLKWDD 816 (844)
Q Consensus 798 te~I~evF~~V~e~Ik~~~ 816 (844)
+.+|+++|.++.+.+...-
T Consensus 175 g~~V~elf~~i~~~~~~~~ 193 (220)
T cd04126 175 GYNVDELFEYLFNLVLPLI 193 (220)
T ss_pred CCCHHHHHHHHHHHHHHHH
Confidence 9999999999998776433
No 65
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=98.65 E-value=1.9e-07 Score=92.31 Aligned_cols=125 Identities=18% Similarity=0.165 Sum_probs=82.9
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcEE
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFV 725 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpiI 725 (844)
+.+++||++|| ...+..|..++.+++++|||+|+++ .+.+++....|-..+.. ...+.|+|
T Consensus 49 ~~l~i~Dt~G~-~~~~~~~~~~~~~ad~ii~v~d~~~-----------------~~s~~~~~~~~~~~~~~-~~~~~pii 109 (187)
T cd04132 49 IELALWDTAGQ-EEYDRLRPLSYPDVDVLLICYAVDN-----------------PTSLDNVEDKWFPEVNH-FCPGTPIM 109 (187)
T ss_pred EEEEEEECCCc-hhHHHHHHHhCCCCCEEEEEEECCC-----------------HHHHHHHHHHHHHHHHH-hCCCCCEE
Confidence 57889999999 6677789899999999999999985 23333443333222221 12478999
Q ss_pred EEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHHHHH
Q 042025 726 LILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVDEAF 805 (844)
Q Consensus 726 LfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~evF 805 (844)
|++||.|+..+.-....+. .+++.++. ... ....++.|||.++.+|+++|
T Consensus 110 lv~nK~Dl~~~~~~~~~v~--------------------~~~~~~~~-----~~~-----~~~~~~e~Sa~~~~~v~~~f 159 (187)
T cd04132 110 LVGLKTDLRKDKNLDRKVT--------------------PAQAESVA-----KKQ-----GAFAYLECSAKTMENVEEVF 159 (187)
T ss_pred EEEeChhhhhCccccCCcC--------------------HHHHHHHH-----HHc-----CCcEEEEccCCCCCCHHHHH
Confidence 9999999875421000000 12333322 111 11146789999999999999
Q ss_pred HHHHHHHhhhhhcc
Q 042025 806 KYIREVLKWDDEKE 819 (844)
Q Consensus 806 ~~V~e~Ik~~~~k~ 819 (844)
.++.+.+....++.
T Consensus 160 ~~l~~~~~~~~~~~ 173 (187)
T cd04132 160 DTAIEEALKKEGKA 173 (187)
T ss_pred HHHHHHHHhhhhhh
Confidence 99999988776553
No 66
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=98.64 E-value=1.7e-07 Score=88.78 Aligned_cols=113 Identities=12% Similarity=0.163 Sum_probs=76.8
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcEE
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFV 725 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpiI 725 (844)
..+.+||++|+ ...+..|..++.+++++|||+|+++ .+.+.+...+++.+..... .+.|+|
T Consensus 49 ~~~~~~D~~g~-~~~~~~~~~~~~~~~~~i~v~d~~~-----------------~~s~~~~~~~~~~i~~~~~-~~~pii 109 (162)
T cd04123 49 IDLAIWDTAGQ-ERYHALGPIYYRDADGAILVYDITD-----------------ADSFQKVKKWIKELKQMRG-NNISLV 109 (162)
T ss_pred EEEEEEECCch-HHHHHhhHHHhccCCEEEEEEECCC-----------------HHHHHHHHHHHHHHHHhCC-CCCeEE
Confidence 46889999999 6777889999999999999999885 2233333344444433221 268999
Q ss_pred EEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHHHHH
Q 042025 726 LILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVDEAF 805 (844)
Q Consensus 726 LfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~evF 805 (844)
|++||.|+..++ ++. .+.+.++. .. ..+-++.+||.++.+++++|
T Consensus 110 iv~nK~D~~~~~----~~~--------------------~~~~~~~~-----~~------~~~~~~~~s~~~~~gi~~~~ 154 (162)
T cd04123 110 IVGNKIDLERQR----VVS--------------------KSEAEEYA-----KS------VGAKHFETSAKTGKGIEELF 154 (162)
T ss_pred EEEECccccccc----CCC--------------------HHHHHHHH-----HH------cCCEEEEEeCCCCCCHHHHH
Confidence 999999987431 111 11222221 11 12335789999999999999
Q ss_pred HHHHHHH
Q 042025 806 KYIREVL 812 (844)
Q Consensus 806 ~~V~e~I 812 (844)
+|+.+.+
T Consensus 155 ~~l~~~~ 161 (162)
T cd04123 155 LSLAKRM 161 (162)
T ss_pred HHHHHHh
Confidence 9998765
No 67
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=98.63 E-value=4.5e-07 Score=90.24 Aligned_cols=120 Identities=15% Similarity=0.168 Sum_probs=80.3
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcEE
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFV 725 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpiI 725 (844)
+.+++||++|+ ...+..|..+|.+++++|||+|+++ .+.+.+....++.+.+. -.+.|+|
T Consensus 50 ~~l~i~D~~G~-~~~~~~~~~~~~~~d~iilv~d~~~-----------------~~s~~~~~~~~~~i~~~--~~~~pii 109 (193)
T cd04118 50 VTLGIWDTAGS-ERYEAMSRIYYRGAKAAIVCYDLTD-----------------SSSFERAKFWVKELQNL--EEHCKIY 109 (193)
T ss_pred EEEEEEECCCc-hhhhhhhHhhcCCCCEEEEEEECCC-----------------HHHHHHHHHHHHHHHhc--CCCCCEE
Confidence 57889999999 6777889899999999999999885 12233333444444443 2368999
Q ss_pred EEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHHHHH
Q 042025 726 LILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVDEAF 805 (844)
Q Consensus 726 LfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~evF 805 (844)
|++||.|+.... . .... -. .+.+.+| ... ..+.++.+||.++.+|+++|
T Consensus 110 lv~nK~Dl~~~~-~--~~~~--------------v~---~~~~~~~-----~~~------~~~~~~~~Sa~~~~gv~~l~ 158 (193)
T cd04118 110 LCGTKSDLIEQD-R--SLRQ--------------VD---FHDVQDF-----ADE------IKAQHFETSSKTGQNVDELF 158 (193)
T ss_pred EEEEcccccccc-c--ccCc--------------cC---HHHHHHH-----HHH------cCCeEEEEeCCCCCCHHHHH
Confidence 999999985421 0 0000 00 1222222 111 12346689999999999999
Q ss_pred HHHHHHHhhhh
Q 042025 806 KYIREVLKWDD 816 (844)
Q Consensus 806 ~~V~e~Ik~~~ 816 (844)
+++.+.+....
T Consensus 159 ~~i~~~~~~~~ 169 (193)
T cd04118 159 QKVAEDFVSRA 169 (193)
T ss_pred HHHHHHHHHhc
Confidence 99998886543
No 68
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=98.63 E-value=5e-07 Score=88.58 Aligned_cols=121 Identities=14% Similarity=0.185 Sum_probs=75.3
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHH-HHHHHHcCCCCCCCcE
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKE-LFEMMIRHPCFKDTPF 724 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~-LFesI~n~p~f~~tpi 724 (844)
.++++||++|+ ...+..|..++.+++++|||.|+++ ...+....+ .+..+.. ...+.|+
T Consensus 48 ~~~~i~Dt~G~-~~~~~~~~~~~~~a~~~i~v~d~~~-----------------~~sf~~~~~~~~~~~~~--~~~~~pi 107 (173)
T cd04130 48 VRLQLCDTAGQ-DEFDKLRPLCYPDTDVFLLCFSVVN-----------------PSSFQNISEKWIPEIRK--HNPKAPI 107 (173)
T ss_pred EEEEEEECCCC-hhhccccccccCCCcEEEEEEECCC-----------------HHHHHHHHHHHHHHHHh--hCCCCCE
Confidence 57899999999 7788889999999999999999885 223333332 2333332 2346899
Q ss_pred EEEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHHHH
Q 042025 725 VLILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVDEA 804 (844)
Q Consensus 725 ILfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~ev 804 (844)
+|++||.|+..+.-....+.. .++. .+ . .+++..|- ... ....+..|||.++.||+++
T Consensus 108 ilv~nK~Dl~~~~~~~~~~~~---~~~~-~v-----~---~~~~~~~a-----~~~-----~~~~~~e~Sa~~~~~v~~l 165 (173)
T cd04130 108 ILVGTQADLRTDVNVLIQLAR---YGEK-PV-----S---QSRAKALA-----EKI-----GACEYIECSALTQKNLKEV 165 (173)
T ss_pred EEEeeChhhccChhHHHHHhh---cCCC-Cc-----C---HHHHHHHH-----HHh-----CCCeEEEEeCCCCCCHHHH
Confidence 999999998643110001110 0000 00 0 23333322 111 2235778999999999999
Q ss_pred HHHH
Q 042025 805 FKYI 808 (844)
Q Consensus 805 F~~V 808 (844)
|+.+
T Consensus 166 f~~~ 169 (173)
T cd04130 166 FDTA 169 (173)
T ss_pred HHHH
Confidence 9865
No 69
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=98.62 E-value=3.2e-07 Score=93.97 Aligned_cols=118 Identities=13% Similarity=0.117 Sum_probs=80.0
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCC--CCCCCc
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHP--CFKDTP 723 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p--~f~~tp 723 (844)
.++++||++|| ...+..|..++.++++||||+|+++ .+.+......++.+.+.- ...+.|
T Consensus 50 ~~~~i~Dt~G~-~~~~~l~~~~~~~ad~iilV~D~t~-----------------~~s~~~~~~w~~~l~~~~~~~~~~~p 111 (215)
T cd04109 50 VTLQVWDIGGQ-SIGGKMLDKYIYGAHAVFLVYDVTN-----------------SQSFENLEDWYSMVRKVLKSSETQPL 111 (215)
T ss_pred EEEEEEECCCc-HHHHHHHHHHhhcCCEEEEEEECCC-----------------HHHHHHHHHHHHHHHHhccccCCCce
Confidence 68999999999 6777889999999999999999985 223333333333333321 124578
Q ss_pred EEEEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHHH
Q 042025 724 FVLILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVDE 803 (844)
Q Consensus 724 iILfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~e 803 (844)
+||+.||.|+..++ +.+ .+.+.+| ...+ .+..+.+||+++++|++
T Consensus 112 iilVgNK~DL~~~~----~v~--------------------~~~~~~~-----~~~~------~~~~~~iSAktg~gv~~ 156 (215)
T cd04109 112 VVLVGNKTDLEHNR----TVK--------------------DDKHARF-----AQAN------GMESCLVSAKTGDRVNL 156 (215)
T ss_pred EEEEEECccccccc----ccC--------------------HHHHHHH-----HHHc------CCEEEEEECCCCCCHHH
Confidence 99999999996421 111 1222222 1111 24467799999999999
Q ss_pred HHHHHHHHHhhhh
Q 042025 804 AFKYIREVLKWDD 816 (844)
Q Consensus 804 vF~~V~e~Ik~~~ 816 (844)
+|+++.+.+....
T Consensus 157 lf~~l~~~l~~~~ 169 (215)
T cd04109 157 LFQQLAAELLGVD 169 (215)
T ss_pred HHHHHHHHHHhcc
Confidence 9999999887543
No 70
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.62 E-value=4.6e-07 Score=93.09 Aligned_cols=119 Identities=16% Similarity=0.165 Sum_probs=84.9
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcEE
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFV 725 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpiI 725 (844)
+++++||++|| ...+..|..++.+++++|||+|+++ .+.+.+..+.++.+..+..-.+.|+|
T Consensus 52 ~~l~i~Dt~G~-~~~~~~~~~~~~~~d~iilv~D~~~-----------------~~Sf~~l~~~~~~i~~~~~~~~~~ii 113 (211)
T cd04111 52 IKLQLWDTAGQ-ERFRSITRSYYRNSVGVLLVFDITN-----------------RESFEHVHDWLEEARSHIQPHRPVFI 113 (211)
T ss_pred EEEEEEeCCcc-hhHHHHHHHHhcCCcEEEEEEECCC-----------------HHHHHHHHHHHHHHHHhcCCCCCeEE
Confidence 67999999999 7777889999999999999999885 23445555666666654333467899
Q ss_pred EEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHHHHH
Q 042025 726 LILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVDEAF 805 (844)
Q Consensus 726 LfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~evF 805 (844)
|+.||.|+...+ ... .+++.+ +.+. ..+.++.|||.++.+|+++|
T Consensus 114 lvgNK~Dl~~~~----~v~--------------------~~~~~~-~~~~----------~~~~~~e~Sak~g~~v~e~f 158 (211)
T cd04111 114 LVGHKCDLESQR----QVT--------------------REEAEK-LAKD----------LGMKYIETSARTGDNVEEAF 158 (211)
T ss_pred EEEEcccccccc----ccC--------------------HHHHHH-HHHH----------hCCEEEEEeCCCCCCHHHHH
Confidence 999999986531 111 122222 1111 12557789999999999999
Q ss_pred HHHHHHHhhhhh
Q 042025 806 KYIREVLKWDDE 817 (844)
Q Consensus 806 ~~V~e~Ik~~~~ 817 (844)
++|.+.+.....
T Consensus 159 ~~l~~~~~~~~~ 170 (211)
T cd04111 159 ELLTQEIYERIK 170 (211)
T ss_pred HHHHHHHHHHhh
Confidence 999987765543
No 71
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=98.62 E-value=2.1e-07 Score=93.93 Aligned_cols=117 Identities=18% Similarity=0.158 Sum_probs=82.2
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcEE
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFV 725 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpiI 725 (844)
.++++||++|+ ...+..|..++.+++++|||+|+++ ...+.+...++..+.......++|+|
T Consensus 47 ~~l~i~D~~G~-~~~~~~~~~~~~~ad~vilv~d~~~-----------------~~s~~~~~~~~~~i~~~~~~~~~pii 108 (198)
T cd04147 47 LTLDILDTSGS-YSFPAMRKLSIQNSDAFALVYAVDD-----------------PESFEEVERLREEILEVKEDKFVPIV 108 (198)
T ss_pred EEEEEEECCCc-hhhhHHHHHHhhcCCEEEEEEECCC-----------------HHHHHHHHHHHHHHHHhcCCCCCcEE
Confidence 46889999999 6777778889999999999999885 23345556666777765555679999
Q ss_pred EEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHHHHH
Q 042025 726 LILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVDEAF 805 (844)
Q Consensus 726 LfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~evF 805 (844)
|++||.|+...+ ..+. .+.+.++ + ... ..+.+..+||.++.+|+++|
T Consensus 109 lv~NK~Dl~~~~---~~v~--------------------~~~~~~~----~-~~~-----~~~~~~~~Sa~~g~gv~~l~ 155 (198)
T cd04147 109 VVGNKADSLEEE---RQVP--------------------AKDALST----V-ELD-----WNCGFVETSAKDNENVLEVF 155 (198)
T ss_pred EEEEcccccccc---cccc--------------------HHHHHHH----H-Hhh-----cCCcEEEecCCCCCCHHHHH
Confidence 999999986520 0110 1122111 1 111 11235679999999999999
Q ss_pred HHHHHHHh
Q 042025 806 KYIREVLK 813 (844)
Q Consensus 806 ~~V~e~Ik 813 (844)
+|+.+.+.
T Consensus 156 ~~l~~~~~ 163 (198)
T cd04147 156 KELLRQAN 163 (198)
T ss_pred HHHHHHhh
Confidence 99998765
No 72
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=98.61 E-value=4.4e-07 Score=88.12 Aligned_cols=112 Identities=11% Similarity=0.161 Sum_probs=76.0
Q ss_pred CceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcE
Q 042025 645 LTKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPF 724 (844)
Q Consensus 645 ~~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpi 724 (844)
...+++||++|+ ...+..|..++.+++++|||+|+++-+ ....+ ...++.+.+. ..+.|+
T Consensus 48 ~~~~~i~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~--------------s~~~~---~~~~~~i~~~--~~~~p~ 107 (161)
T cd04124 48 TILVDFWDTAGQ-ERFQTMHASYYHKAHACILVFDVTRKI--------------TYKNL---SKWYEELREY--RPEIPC 107 (161)
T ss_pred EEEEEEEeCCCc-hhhhhhhHHHhCCCCEEEEEEECCCHH--------------HHHHH---HHHHHHHHHh--CCCCcE
Confidence 367899999999 778889999999999999999987511 01222 2233333221 236899
Q ss_pred EEEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHHHH
Q 042025 725 VLILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVDEA 804 (844)
Q Consensus 725 ILfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~ev 804 (844)
||++||.|+..+ . .+++.. |..- ..+.++.+||.++.+++++
T Consensus 108 ivv~nK~Dl~~~------~---------------------~~~~~~-----~~~~------~~~~~~~~Sa~~~~gv~~l 149 (161)
T cd04124 108 IVVANKIDLDPS------V---------------------TQKKFN-----FAEK------HNLPLYYVSAADGTNVVKL 149 (161)
T ss_pred EEEEECccCchh------H---------------------HHHHHH-----HHHH------cCCeEEEEeCCCCCCHHHH
Confidence 999999998321 0 011111 1111 1245678999999999999
Q ss_pred HHHHHHHHhh
Q 042025 805 FKYIREVLKW 814 (844)
Q Consensus 805 F~~V~e~Ik~ 814 (844)
|+.+.+.+..
T Consensus 150 ~~~l~~~~~~ 159 (161)
T cd04124 150 FQDAIKLAVS 159 (161)
T ss_pred HHHHHHHHHh
Confidence 9999877654
No 73
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=98.61 E-value=2.7e-07 Score=90.06 Aligned_cols=115 Identities=15% Similarity=0.166 Sum_probs=82.3
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcEE
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFV 725 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpiI 725 (844)
..+++||++|+ ...+..+.+++++++++|||+|+++ .+.+.....+++.+..+. -.+.|+|
T Consensus 53 ~~~~i~Dt~G~-~~~~~~~~~~~~~~d~il~v~d~~~-----------------~~s~~~~~~~~~~~~~~~-~~~~pvi 113 (168)
T cd01866 53 IKLQIWDTAGQ-ESFRSITRSYYRGAAGALLVYDITR-----------------RETFNHLTSWLEDARQHS-NSNMTIM 113 (168)
T ss_pred EEEEEEECCCc-HHHHHHHHHHhccCCEEEEEEECCC-----------------HHHHHHHHHHHHHHHHhC-CCCCcEE
Confidence 46889999999 6677788899999999999999984 233444455666665543 2578999
Q ss_pred EEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHHHHH
Q 042025 726 LILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVDEAF 805 (844)
Q Consensus 726 LfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~evF 805 (844)
|++||.|+..++ .+. .+++..+.. . ..+.+..+||+++++|+++|
T Consensus 114 vv~nK~Dl~~~~----~~~--------------------~~~~~~~~~----~-------~~~~~~e~Sa~~~~~i~~~~ 158 (168)
T cd01866 114 LIGNKCDLESRR----EVS--------------------YEEGEAFAK----E-------HGLIFMETSAKTASNVEEAF 158 (168)
T ss_pred EEEECccccccc----CCC--------------------HHHHHHHHH----H-------cCCEEEEEeCCCCCCHHHHH
Confidence 999999987531 111 233333221 1 13457889999999999999
Q ss_pred HHHHHHHhh
Q 042025 806 KYIREVLKW 814 (844)
Q Consensus 806 ~~V~e~Ik~ 814 (844)
.++.+.+..
T Consensus 159 ~~~~~~~~~ 167 (168)
T cd01866 159 INTAKEIYE 167 (168)
T ss_pred HHHHHHHHh
Confidence 999887753
No 74
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=98.60 E-value=4.1e-07 Score=91.15 Aligned_cols=129 Identities=16% Similarity=0.149 Sum_probs=81.6
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHH-HHHHHHHcCCCCCCCcE
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSK-ELFEMMIRHPCFKDTPF 724 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl-~LFesI~n~p~f~~tpi 724 (844)
..+++||++|| ...+..|..+|.+++++|+|.|+++- +-+.... ..+..+..+ ..+.|+
T Consensus 48 ~~l~i~Dt~G~-~~~~~l~~~~~~~a~~~ilv~dv~~~-----------------~sf~~~~~~~~~~i~~~--~~~~pi 107 (189)
T cd04134 48 IELSLWDTAGQ-EEFDRLRSLSYADTDVIMLCFSVDSP-----------------DSLENVESKWLGEIREH--CPGVKL 107 (189)
T ss_pred EEEEEEECCCC-hhccccccccccCCCEEEEEEECCCH-----------------HHHHHHHHHHHHHHHHh--CCCCCE
Confidence 57899999999 77788899999999999999998851 1222221 123333332 247899
Q ss_pred EEEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHHHH
Q 042025 725 VLILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVDEA 804 (844)
Q Consensus 725 ILfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~ev 804 (844)
||+.||.|+..++-....+.. +..- .. ..+++.++. .. .+.+.++.|||.++.+|+++
T Consensus 108 ilvgNK~Dl~~~~~~~~~~~~---~~~~-------~v--~~~~~~~~~--------~~--~~~~~~~e~SAk~~~~v~e~ 165 (189)
T cd04134 108 VLVALKCDLREARNERDDLQR---YGKH-------TI--SYEEGLAVA--------KR--INALRYLECSAKLNRGVNEA 165 (189)
T ss_pred EEEEEChhhccChhhHHHHhh---ccCC-------CC--CHHHHHHHH--------HH--cCCCEEEEccCCcCCCHHHH
Confidence 999999999764311100000 0000 00 012222211 11 12356789999999999999
Q ss_pred HHHHHHHHhhhh
Q 042025 805 FKYIREVLKWDD 816 (844)
Q Consensus 805 F~~V~e~Ik~~~ 816 (844)
|.|+.+.+....
T Consensus 166 f~~l~~~~~~~~ 177 (189)
T cd04134 166 FTEAARVALNVR 177 (189)
T ss_pred HHHHHHHHhccc
Confidence 999998886444
No 75
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=98.59 E-value=2.3e-07 Score=91.02 Aligned_cols=112 Identities=13% Similarity=0.202 Sum_probs=80.2
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcEE
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFV 725 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpiI 725 (844)
..+.+||+.|| ......|.++|.+++++|||+|+++ .+.+......+..+.+.. .++|++
T Consensus 49 ~~l~i~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~-----------------~~s~~~~~~~~~~i~~~~--~~~pii 108 (166)
T cd00877 49 IRFNVWDTAGQ-EKFGGLRDGYYIGGQCAIIMFDVTS-----------------RVTYKNVPNWHRDLVRVC--GNIPIV 108 (166)
T ss_pred EEEEEEECCCC-hhhccccHHHhcCCCEEEEEEECCC-----------------HHHHHHHHHHHHHHHHhC--CCCcEE
Confidence 67999999999 6667778889999999999999885 233344444555555432 289999
Q ss_pred EEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHHHHH
Q 042025 726 LILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVDEAF 805 (844)
Q Consensus 726 LfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~evF 805 (844)
|+.||.|+.... .. ..+.+ +.. .+.+.++.|||.++++|+++|
T Consensus 109 iv~nK~Dl~~~~-----~~---------------------~~~~~-----~~~------~~~~~~~e~Sa~~~~~v~~~f 151 (166)
T cd00877 109 LCGNKVDIKDRK-----VK---------------------AKQIT-----FHR------KKNLQYYEISAKSNYNFEKPF 151 (166)
T ss_pred EEEEchhccccc-----CC---------------------HHHHH-----HHH------HcCCEEEEEeCCCCCChHHHH
Confidence 999999985321 00 11111 211 134557899999999999999
Q ss_pred HHHHHHHhh
Q 042025 806 KYIREVLKW 814 (844)
Q Consensus 806 ~~V~e~Ik~ 814 (844)
+|+.+.+..
T Consensus 152 ~~l~~~~~~ 160 (166)
T cd00877 152 LWLARKLLG 160 (166)
T ss_pred HHHHHHHHh
Confidence 999988753
No 76
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=98.59 E-value=4.1e-07 Score=95.06 Aligned_cols=130 Identities=12% Similarity=0.107 Sum_probs=82.6
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcEE
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFV 725 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpiI 725 (844)
+.+.+||++|| ...+..|..+|.+++++|||+|+++ ...+...+..|...+.. ...++|+|
T Consensus 49 v~L~iwDt~G~-e~~~~l~~~~~~~~d~illvfdis~-----------------~~Sf~~i~~~w~~~~~~-~~~~~pii 109 (222)
T cd04173 49 IELNMWDTSGS-SYYDNVRPLAYPDSDAVLICFDISR-----------------PETLDSVLKKWQGETQE-FCPNAKVV 109 (222)
T ss_pred EEEEEEeCCCc-HHHHHHhHHhccCCCEEEEEEECCC-----------------HHHHHHHHHHHHHHHHh-hCCCCCEE
Confidence 67999999999 6778889999999999999999986 23444554555544433 33579999
Q ss_pred EEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCC-HHHH
Q 042025 726 LILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVT-VDEA 804 (844)
Q Consensus 726 LfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~-I~ev 804 (844)
|+.||.||....-....+.. ....+. . .+++..+ .... .-+..+.|||.++++ |+++
T Consensus 110 LVgnK~DL~~~~~~~~~~~~----~~~~pI-----s---~e~g~~~-----ak~~-----~~~~y~E~SAk~~~~~V~~~ 167 (222)
T cd04173 110 LVGCKLDMRTDLATLRELSK----QRLIPV-----T---HEQGTVL-----AKQV-----GAVSYVECSSRSSERSVRDV 167 (222)
T ss_pred EEEECcccccchhhhhhhhh----ccCCcc-----C---HHHHHHH-----HHHc-----CCCEEEEcCCCcCCcCHHHH
Confidence 99999998653100001110 000111 0 2333221 1111 123466899999885 9999
Q ss_pred HHHHHHHHhhhh
Q 042025 805 FKYIREVLKWDD 816 (844)
Q Consensus 805 F~~V~e~Ik~~~ 816 (844)
|..+........
T Consensus 168 F~~~~~~~~~~~ 179 (222)
T cd04173 168 FHVATVASLGRG 179 (222)
T ss_pred HHHHHHHHHhcc
Confidence 998887665433
No 77
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=98.59 E-value=3.6e-07 Score=89.56 Aligned_cols=110 Identities=11% Similarity=0.161 Sum_probs=79.9
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcEE
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFV 725 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpiI 725 (844)
..+++||++|| .. ..++.+++++|+|.|+++ .+.+++....++.+.++....+.|++
T Consensus 47 ~~l~i~D~~g~-~~-----~~~~~~~~~~ilv~d~~~-----------------~~sf~~~~~~~~~i~~~~~~~~~pii 103 (158)
T cd04103 47 HLLLIRDEGGA-PD-----AQFASWVDAVIFVFSLEN-----------------EASFQTVYNLYHQLSSYRNISEIPLI 103 (158)
T ss_pred EEEEEEECCCC-Cc-----hhHHhcCCEEEEEEECCC-----------------HHHHHHHHHHHHHHHHhcCCCCCCEE
Confidence 46889999999 32 357788999999999985 56777878888888887666789999
Q ss_pred EEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHHHHH
Q 042025 726 LILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVDEAF 805 (844)
Q Consensus 726 LfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~evF 805 (844)
|+.||.|+..+. ...++ .+++.++. + . .+.+.++.|||+++.||+++|
T Consensus 104 lvgnK~Dl~~~~--~~~v~--------------------~~~~~~~~-----~---~--~~~~~~~e~SAk~~~~i~~~f 151 (158)
T cd04103 104 LVGTQDAISESN--PRVID--------------------DARARQLC-----A---D--MKRCSYYETCATYGLNVERVF 151 (158)
T ss_pred EEeeHHHhhhcC--CcccC--------------------HHHHHHHH-----H---H--hCCCcEEEEecCCCCCHHHHH
Confidence 999999985321 01111 12232221 1 1 134667899999999999999
Q ss_pred HHHHH
Q 042025 806 KYIRE 810 (844)
Q Consensus 806 ~~V~e 810 (844)
+++.+
T Consensus 152 ~~~~~ 156 (158)
T cd04103 152 QEAAQ 156 (158)
T ss_pred HHHHh
Confidence 98864
No 78
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=98.59 E-value=3.6e-07 Score=87.49 Aligned_cols=112 Identities=12% Similarity=0.155 Sum_probs=81.5
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcEE
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFV 725 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpiI 725 (844)
..+++||++|+ ......|..++.+++++|||+|+++ .+.+.....++..+..+..-.+.|++
T Consensus 49 ~~~~l~D~~g~-~~~~~~~~~~~~~~d~~i~v~d~~~-----------------~~s~~~~~~~~~~i~~~~~~~~~~~~ 110 (161)
T cd01863 49 VKLAIWDTAGQ-ERFRTLTSSYYRGAQGVILVYDVTR-----------------RDTFTNLETWLNELETYSTNNDIVKM 110 (161)
T ss_pred EEEEEEECCCc-hhhhhhhHHHhCCCCEEEEEEECCC-----------------HHHHHhHHHHHHHHHHhCCCCCCcEE
Confidence 46889999999 6777889999999999999999875 23344555566666665545679999
Q ss_pred EEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHHHHH
Q 042025 726 LILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVDEAF 805 (844)
Q Consensus 726 LfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~evF 805 (844)
|++||.|+.... . + .+.+..+. . ...+.+..+||.++.+++++|
T Consensus 111 iv~nK~D~~~~~-----~-----------------~---~~~~~~~~-----~------~~~~~~~~~Sa~~~~gi~~~~ 154 (161)
T cd01863 111 LVGNKIDKENRE-----V-----------------T---REEGLKFA-----R------KHNMLFIETSAKTRDGVQQAF 154 (161)
T ss_pred EEEECCcccccc-----c-----------------C---HHHHHHHH-----H------HcCCEEEEEecCCCCCHHHHH
Confidence 999999997321 0 0 12222222 1 124568899999999999999
Q ss_pred HHHHHH
Q 042025 806 KYIREV 811 (844)
Q Consensus 806 ~~V~e~ 811 (844)
+++.+.
T Consensus 155 ~~~~~~ 160 (161)
T cd01863 155 EELVEK 160 (161)
T ss_pred HHHHHh
Confidence 988764
No 79
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=98.58 E-value=5.1e-07 Score=91.06 Aligned_cols=126 Identities=15% Similarity=0.136 Sum_probs=77.2
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHH-HHHHcCCCCCCCcE
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELF-EMMIRHPCFKDTPF 724 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LF-esI~n~p~f~~tpi 724 (844)
+++++||+.|| ...+..|..+|.+++++|+|.|+++ ...+...+..| +.+-.+ ..++|+
T Consensus 53 ~~l~iwDtaG~-e~~~~~~~~~~~~ad~~ilvyDit~-----------------~~Sf~~~~~~w~~~i~~~--~~~~pi 112 (182)
T cd04172 53 IELSLWDTSGS-PYYDNVRPLSYPDSDAVLICFDISR-----------------PETLDSVLKKWKGEIQEF--CPNTKM 112 (182)
T ss_pred EEEEEEECCCc-hhhHhhhhhhcCCCCEEEEEEECCC-----------------HHHHHHHHHHHHHHHHHH--CCCCCE
Confidence 68999999999 7778889999999999999999985 22233332222 222222 246899
Q ss_pred EEEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCC-HHH
Q 042025 725 VLILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVT-VDE 803 (844)
Q Consensus 725 ILfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~-I~e 803 (844)
||+.||.||-+..-....+... .. ..+ . .+++.+|- + .. .-+..+.|||+++.+ |++
T Consensus 113 ilVgNK~DL~~~~~~~~~~~~~---~~-~~v-----~---~~~~~~~a-----~---~~--~~~~~~E~SAk~~~n~v~~ 170 (182)
T cd04172 113 LLVGCKSDLRTDLTTLVELSNH---RQ-TPV-----S---YDQGANMA-----K---QI--GAATYIECSALQSENSVRD 170 (182)
T ss_pred EEEeEChhhhcChhhHHHHHhc---CC-CCC-----C---HHHHHHHH-----H---Hc--CCCEEEECCcCCCCCCHHH
Confidence 9999999985421000000000 00 000 0 23333321 1 11 112467899999998 999
Q ss_pred HHHHHHHHHh
Q 042025 804 AFKYIREVLK 813 (844)
Q Consensus 804 vF~~V~e~Ik 813 (844)
+|..+.....
T Consensus 171 ~F~~~~~~~~ 180 (182)
T cd04172 171 IFHVATLACV 180 (182)
T ss_pred HHHHHHHHHh
Confidence 9998877543
No 80
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=98.57 E-value=4.2e-07 Score=87.61 Aligned_cols=118 Identities=15% Similarity=0.217 Sum_probs=80.6
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHc---CCCCCCC
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIR---HPCFKDT 722 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n---~p~f~~t 722 (844)
..+++||++|+ ......|.+++.+++++|||+|+++ ...+.+...+++.++. .....+.
T Consensus 49 ~~~~~~D~~g~-~~~~~~~~~~~~~~d~~i~v~d~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (172)
T cd01862 49 VTLQIWDTAGQ-ERFQSLGVAFYRGADCCVLVYDVTN-----------------PKSFESLDSWRDEFLIQASPSDPENF 110 (172)
T ss_pred EEEEEEeCCCh-HHHHhHHHHHhcCCCEEEEEEECCC-----------------HHHHHHHHHHHHHHHHhcCccCCCCc
Confidence 46889999999 6777889999999999999999874 1122333333333332 2334579
Q ss_pred cEEEEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHH
Q 042025 723 PFVLILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVD 802 (844)
Q Consensus 723 piILfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~ 802 (844)
|++|++||.|+..++ ++. .+....+. +. ...+.++.+||.++.|++
T Consensus 111 p~ilv~nK~Dl~~~~----~~~--------------------~~~~~~~~-----~~-----~~~~~~~~~Sa~~~~gv~ 156 (172)
T cd01862 111 PFVVLGNKIDLEEKR----QVS--------------------TKKAQQWC-----QS-----NGNIPYFETSAKEAINVE 156 (172)
T ss_pred eEEEEEECccccccc----ccC--------------------HHHHHHHH-----HH-----cCCceEEEEECCCCCCHH
Confidence 999999999997521 111 12222211 11 123567889999999999
Q ss_pred HHHHHHHHHHhhh
Q 042025 803 EAFKYIREVLKWD 815 (844)
Q Consensus 803 evF~~V~e~Ik~~ 815 (844)
++|+++.+.+...
T Consensus 157 ~l~~~i~~~~~~~ 169 (172)
T cd01862 157 QAFETIARKALEQ 169 (172)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999877654
No 81
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=98.57 E-value=7.5e-07 Score=86.76 Aligned_cols=116 Identities=16% Similarity=0.243 Sum_probs=80.6
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcEE
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFV 725 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpiI 725 (844)
.++++||++|+ ...+..|..++.+++++|||+|+++ .+-++.....++.+.....-.++|++
T Consensus 49 ~~~~i~Dt~G~-~~~~~~~~~~~~~~~~~vlv~~~~~-----------------~~s~~~~~~~~~~i~~~~~~~~~pii 110 (168)
T cd04177 49 CDLEILDTAGT-EQFTAMRELYIKSGQGFLLVYSVTS-----------------EASLNELGELREQVLRIKDSDNVPMV 110 (168)
T ss_pred EEEEEEeCCCc-ccchhhhHHHHhhCCEEEEEEECCC-----------------HHHHHHHHHHHHHHHHhhCCCCCCEE
Confidence 57899999999 7888899999999999999999885 12233334445555443334579999
Q ss_pred EEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHHHHH
Q 042025 726 LILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVDEAF 805 (844)
Q Consensus 726 LfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~evF 805 (844)
|++||.|+...+ ++. .+.+.+ +.++ . +.+-++.|||+.+.+|+++|
T Consensus 111 iv~nK~D~~~~~----~~~--------------------~~~~~~-~~~~----~-----~~~~~~~~SA~~~~~i~~~f 156 (168)
T cd04177 111 LVGNKADLEDDR----QVS--------------------REDGVS-LSQQ----W-----GNVPFYETSARKRTNVDEVF 156 (168)
T ss_pred EEEEChhccccC----ccC--------------------HHHHHH-HHHH----c-----CCceEEEeeCCCCCCHHHHH
Confidence 999999987531 111 122222 1111 1 12336689999999999999
Q ss_pred HHHHHHHh
Q 042025 806 KYIREVLK 813 (844)
Q Consensus 806 ~~V~e~Ik 813 (844)
+|+...+.
T Consensus 157 ~~i~~~~~ 164 (168)
T cd04177 157 IDLVRQII 164 (168)
T ss_pred HHHHHHHh
Confidence 99987664
No 82
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=98.57 E-value=3.7e-07 Score=87.42 Aligned_cols=113 Identities=16% Similarity=0.255 Sum_probs=83.0
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcEE
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFV 725 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpiI 725 (844)
+++.+||++|+ ...+..|.+++.+++++|||+|+++ ...+..+..++..+..+.. .+.|++
T Consensus 50 ~~~~i~D~~G~-~~~~~~~~~~~~~~~~~i~v~d~~~-----------------~~s~~~~~~~~~~~~~~~~-~~~~ii 110 (163)
T cd01860 50 VKFEIWDTAGQ-ERYRSLAPMYYRGAAAAIVVYDITS-----------------EESFEKAKSWVKELQRNAS-PNIIIA 110 (163)
T ss_pred EEEEEEeCCch-HHHHHHHHHHhccCCEEEEEEECcC-----------------HHHHHHHHHHHHHHHHhCC-CCCeEE
Confidence 57899999999 6778889999999999999999884 2345566666676666543 578999
Q ss_pred EEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHHHHH
Q 042025 726 LILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVDEAF 805 (844)
Q Consensus 726 LfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~evF 805 (844)
|++||.|+...+ .. + .+.+..+. .. ..+.+..+||+++.+++++|
T Consensus 111 vv~nK~D~~~~~----~~----------------~----~~~~~~~~-----~~------~~~~~~~~Sa~~~~~v~~l~ 155 (163)
T cd01860 111 LVGNKADLESKR----QV----------------S----TEEAQEYA-----DE------NGLLFFETSAKTGENVNELF 155 (163)
T ss_pred EEEECccccccC----cC----------------C----HHHHHHHH-----HH------cCCEEEEEECCCCCCHHHHH
Confidence 999999987421 00 0 22232222 11 11558999999999999999
Q ss_pred HHHHHHH
Q 042025 806 KYIREVL 812 (844)
Q Consensus 806 ~~V~e~I 812 (844)
+++.+.|
T Consensus 156 ~~l~~~l 162 (163)
T cd01860 156 TEIAKKL 162 (163)
T ss_pred HHHHHHh
Confidence 9998875
No 83
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.57 E-value=4.6e-07 Score=95.39 Aligned_cols=133 Identities=15% Similarity=0.116 Sum_probs=80.3
Q ss_pred CceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcE
Q 042025 645 LTKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPF 724 (844)
Q Consensus 645 ~~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpi 724 (844)
.+++++||++|| ...+..|..||.+++++|+|.|+++ .+.+...+..|...+... ..+.|+
T Consensus 60 ~v~l~iwDTaG~-e~~~~~~~~~~~~ad~vIlVyDit~-----------------~~Sf~~~~~~w~~~i~~~-~~~~pi 120 (232)
T cd04174 60 RVELSLWDTSGS-PYYDNVRPLCYSDSDAVLLCFDISR-----------------PETVDSALKKWKAEIMDY-CPSTRI 120 (232)
T ss_pred EEEEEEEeCCCc-hhhHHHHHHHcCCCcEEEEEEECCC-----------------hHHHHHHHHHHHHHHHHh-CCCCCE
Confidence 368999999999 6777788899999999999999985 222333322222222211 136899
Q ss_pred EEEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCC-CHHH
Q 042025 725 VLILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRV-TVDE 803 (844)
Q Consensus 725 ILfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte-~I~e 803 (844)
||+.||.||..+.-....+... .-..+ . .+++.+|-. .. + -...+.|||.+++ +|++
T Consensus 121 ilVgNK~DL~~~~~~~~~l~~~----~~~~V-----s---~~e~~~~a~--------~~-~-~~~~~EtSAktg~~~V~e 178 (232)
T cd04174 121 LLIGCKTDLRTDLSTLMELSNQ----KQAPI-----S---YEQGCALAK--------QL-G-AEVYLECSAFTSEKSIHS 178 (232)
T ss_pred EEEEECcccccccchhhhhccc----cCCcC-----C---HHHHHHHHH--------Hc-C-CCEEEEccCCcCCcCHHH
Confidence 9999999985421000000000 00000 0 234433221 11 1 1134689999997 8999
Q ss_pred HHHHHHHHHhhhhhc
Q 042025 804 AFKYIREVLKWDDEK 818 (844)
Q Consensus 804 vF~~V~e~Ik~~~~k 818 (844)
+|..+...+....++
T Consensus 179 ~F~~~~~~~~~~~~~ 193 (232)
T cd04174 179 IFRSASLLCLNKLSP 193 (232)
T ss_pred HHHHHHHHHHHhccc
Confidence 999988877665443
No 84
>PLN03118 Rab family protein; Provisional
Probab=98.57 E-value=6.6e-07 Score=91.20 Aligned_cols=117 Identities=10% Similarity=0.133 Sum_probs=81.5
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcC-CCCCCCcE
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRH-PCFKDTPF 724 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~-p~f~~tpi 724 (844)
..+.+||++|| ...+..|..++.+++++|||+|+++ ...+.+....|..++.. ....+.|+
T Consensus 62 ~~l~l~Dt~G~-~~~~~~~~~~~~~~d~~vlv~D~~~-----------------~~sf~~~~~~~~~~~~~~~~~~~~~~ 123 (211)
T PLN03118 62 LKLTIWDTAGQ-ERFRTLTSSYYRNAQGIILVYDVTR-----------------RETFTNLSDVWGKEVELYSTNQDCVK 123 (211)
T ss_pred EEEEEEECCCc-hhhHHHHHHHHhcCCEEEEEEECCC-----------------HHHHHHHHHHHHHHHHHhcCCCCCCE
Confidence 57899999999 7778889999999999999999985 22333444445444432 22456799
Q ss_pred EEEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHHHH
Q 042025 725 VLILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVDEA 804 (844)
Q Consensus 725 ILfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~ev 804 (844)
||+.||.|+..++ ++. .+.+..+. . ...+.++.+||.++.+|+++
T Consensus 124 ilv~NK~Dl~~~~----~i~--------------------~~~~~~~~-----~------~~~~~~~e~SAk~~~~v~~l 168 (211)
T PLN03118 124 MLVGNKVDRESER----DVS--------------------REEGMALA-----K------EHGCLFLECSAKTRENVEQC 168 (211)
T ss_pred EEEEECccccccC----ccC--------------------HHHHHHHH-----H------HcCCEEEEEeCCCCCCHHHH
Confidence 9999999986531 111 12221111 1 12345779999999999999
Q ss_pred HHHHHHHHhhh
Q 042025 805 FKYIREVLKWD 815 (844)
Q Consensus 805 F~~V~e~Ik~~ 815 (844)
|++|.+.+...
T Consensus 169 ~~~l~~~~~~~ 179 (211)
T PLN03118 169 FEELALKIMEV 179 (211)
T ss_pred HHHHHHHHHhh
Confidence 99999888554
No 85
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=98.55 E-value=5.9e-07 Score=85.66 Aligned_cols=118 Identities=13% Similarity=0.146 Sum_probs=78.1
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcC-CCCCCCcE
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRH-PCFKDTPF 724 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~-p~f~~tpi 724 (844)
..+++||++|+ ...+..|.++|.+++++|||+|+++-+. ...+.+-+..+...+.. ....+.|+
T Consensus 49 ~~l~i~Dt~G~-~~~~~~~~~~~~~~d~~ilv~D~~~~~s--------------~~~~~~~~~~~~~~~~~~~~~~~~pi 113 (168)
T cd04119 49 VRVNFFDLSGH-PEYLEVRNEFYKDTQGVLLVYDVTDRQS--------------FEALDSWLKEMKQEGGPHGNMENIVV 113 (168)
T ss_pred EEEEEEECCcc-HHHHHHHHHHhccCCEEEEEEECCCHHH--------------HHhHHHHHHHHHHhccccccCCCceE
Confidence 67899999999 6667788899999999999999885111 12233333333332321 12356899
Q ss_pred EEEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHHHH
Q 042025 725 VLILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVDEA 804 (844)
Q Consensus 725 ILfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~ev 804 (844)
+|++||.|+..++ ... .+++..+. . . +.+.++.+||.++.+|.++
T Consensus 114 ilv~nK~Dl~~~~----~~~--------------------~~~~~~~~-----~---~---~~~~~~~~Sa~~~~gi~~l 158 (168)
T cd04119 114 VVCANKIDLTKHR----AVS--------------------EDEGRLWA-----E---S---KGFKYFETSACTGEGVNEM 158 (168)
T ss_pred EEEEEchhccccc----ccC--------------------HHHHHHHH-----H---H---cCCeEEEEECCCCCCHHHH
Confidence 9999999986421 010 12222221 1 1 1244789999999999999
Q ss_pred HHHHHHHHh
Q 042025 805 FKYIREVLK 813 (844)
Q Consensus 805 F~~V~e~Ik 813 (844)
|+++.+.|.
T Consensus 159 ~~~l~~~l~ 167 (168)
T cd04119 159 FQTLFSSIV 167 (168)
T ss_pred HHHHHHHHh
Confidence 999987764
No 86
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=98.54 E-value=4.4e-07 Score=89.38 Aligned_cols=113 Identities=14% Similarity=0.072 Sum_probs=75.6
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcEE
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFV 725 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpiI 725 (844)
..+.+||+||+ ...+..|..+|.+++++|||+|.++ ...+.....+++.+.. ..+.|++
T Consensus 54 ~~l~~~d~~g~-~~~~~~~~~~~~~~d~~llv~d~~~-----------------~~s~~~~~~~~~~~~~---~~~~p~i 112 (169)
T cd01892 54 KYLILREVGED-EVAILLNDAELAACDVACLVYDSSD-----------------PKSFSYCAEVYKKYFM---LGEIPCL 112 (169)
T ss_pred EEEEEEecCCc-ccccccchhhhhcCCEEEEEEeCCC-----------------HHHHHHHHHHHHHhcc---CCCCeEE
Confidence 46889999999 6778889999999999999999875 1223333444443322 2378999
Q ss_pred EEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHHHHH
Q 042025 726 LILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVDEAF 805 (844)
Q Consensus 726 LfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~evF 805 (844)
+++||.|+.+++ .... .++.+ |.... +-. .++.+||.++.+++++|
T Consensus 113 iv~NK~Dl~~~~--~~~~----------------------~~~~~-----~~~~~----~~~-~~~~~Sa~~~~~v~~lf 158 (169)
T cd01892 113 FVAAKADLDEQQ--QRYE----------------------VQPDE-----FCRKL----GLP-PPLHFSSKLGDSSNELF 158 (169)
T ss_pred EEEEcccccccc--cccc----------------------cCHHH-----HHHHc----CCC-CCEEEEeccCccHHHHH
Confidence 999999986431 0000 01111 11111 111 23678999999999999
Q ss_pred HHHHHHHh
Q 042025 806 KYIREVLK 813 (844)
Q Consensus 806 ~~V~e~Ik 813 (844)
+.+.+.+.
T Consensus 159 ~~l~~~~~ 166 (169)
T cd01892 159 TKLATAAQ 166 (169)
T ss_pred HHHHHHhh
Confidence 99988765
No 87
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=98.54 E-value=1.1e-06 Score=85.47 Aligned_cols=126 Identities=19% Similarity=0.215 Sum_probs=79.5
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHH-HHHHHHcCCCCCCCcE
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKE-LFEMMIRHPCFKDTPF 724 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~-LFesI~n~p~f~~tpi 724 (844)
..+++||++|| ...+..|..++.+++++|||+|+++ ...+++... .+..+... ..+.|+
T Consensus 46 ~~~~i~Dt~G~-~~~~~~~~~~~~~~d~~ilv~d~~~-----------------~~s~~~~~~~~~~~i~~~--~~~~pi 105 (174)
T smart00174 46 VELGLWDTAGQ-EDYDRLRPLSYPDTDVFLICFSVDS-----------------PASFENVKEKWYPEVKHF--CPNTPI 105 (174)
T ss_pred EEEEEEECCCC-cccchhchhhcCCCCEEEEEEECCC-----------------HHHHHHHHHHHHHHHHhh--CCCCCE
Confidence 57899999999 6777788889999999999999875 223333333 33444332 357999
Q ss_pred EEEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHHHH
Q 042025 725 VLILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVDEA 804 (844)
Q Consensus 725 ILfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~ev 804 (844)
||+.||.|+..+.-....+... +.... . .+++..+. .- . + ..-++.+||.++.+|+++
T Consensus 106 ilv~nK~Dl~~~~~~~~~~~~~----~~~~v-----~---~~~~~~~~-----~~---~-~-~~~~~e~Sa~~~~~v~~l 163 (174)
T smart00174 106 ILVGTKLDLREDKSTLRELSKQ----KQEPV-----T---YEQGEALA-----KR---I-G-AVKYLECSALTQEGVREV 163 (174)
T ss_pred EEEecChhhhhChhhhhhhhcc----cCCCc-----c---HHHHHHHH-----HH---c-C-CcEEEEecCCCCCCHHHH
Confidence 9999999997642211111110 00000 0 22332221 11 1 1 123567899999999999
Q ss_pred HHHHHHHHh
Q 042025 805 FKYIREVLK 813 (844)
Q Consensus 805 F~~V~e~Ik 813 (844)
|+.+.+.+.
T Consensus 164 f~~l~~~~~ 172 (174)
T smart00174 164 FEEAIRAAL 172 (174)
T ss_pred HHHHHHHhc
Confidence 999887764
No 88
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.54 E-value=1e-06 Score=88.25 Aligned_cols=118 Identities=14% Similarity=0.176 Sum_probs=81.5
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcEE
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFV 725 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpiI 725 (844)
..+++||++|| ...+..|..+|.+++++|||+|+++ .+.+.+....+..+... .-.+.|+|
T Consensus 50 ~~~~i~Dt~G~-~~~~~~~~~~~~~ad~~i~v~D~~~-----------------~~s~~~~~~~~~~i~~~-~~~~~pii 110 (191)
T cd04112 50 VKLQIWDTAGQ-ERFRSVTHAYYRDAHALLLLYDITN-----------------KASFDNIRAWLTEIKEY-AQEDVVIM 110 (191)
T ss_pred EEEEEEeCCCc-HHHHHhhHHHccCCCEEEEEEECCC-----------------HHHHHHHHHHHHHHHHh-CCCCCcEE
Confidence 67999999999 6777788899999999999999985 22333444444444432 12368999
Q ss_pred EEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHHHHH
Q 042025 726 LILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVDEAF 805 (844)
Q Consensus 726 LfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~evF 805 (844)
|++||.|+..++ ... .+++.. +..++ .+.+..+||.++.+|+++|
T Consensus 111 iv~NK~Dl~~~~----~~~--------------------~~~~~~-l~~~~----------~~~~~e~Sa~~~~~v~~l~ 155 (191)
T cd04112 111 LLGNKADMSGER----VVK--------------------REDGER-LAKEY----------GVPFMETSAKTGLNVELAF 155 (191)
T ss_pred EEEEcccchhcc----ccC--------------------HHHHHH-HHHHc----------CCeEEEEeCCCCCCHHHHH
Confidence 999999986431 010 122222 11111 1346789999999999999
Q ss_pred HHHHHHHhhhhh
Q 042025 806 KYIREVLKWDDE 817 (844)
Q Consensus 806 ~~V~e~Ik~~~~ 817 (844)
.++.+.+.....
T Consensus 156 ~~l~~~~~~~~~ 167 (191)
T cd04112 156 TAVAKELKHRKY 167 (191)
T ss_pred HHHHHHHHHhcc
Confidence 999998866543
No 89
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=98.54 E-value=2.8e-07 Score=89.41 Aligned_cols=116 Identities=17% Similarity=0.188 Sum_probs=76.1
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcEE
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFV 725 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpiI 725 (844)
.++++||++|+ ...+..|..+|.+++++|||.|+++ .+. ...+.+-+..+...++.....+.|++
T Consensus 54 ~~l~i~D~~G~-~~~~~~~~~~~~~~d~~i~v~d~~~-------~~s-------~~~~~~~~~~~~~~~~~~~~~~~pii 118 (170)
T cd04116 54 VTLQIWDTAGQ-ERFRSLRTPFYRGSDCCLLTFAVDD-------SQS-------FQNLSNWKKEFIYYADVKEPESFPFV 118 (170)
T ss_pred EEEEEEeCCCh-HHHHHhHHHHhcCCCEEEEEEECCC-------HHH-------HHhHHHHHHHHHHhcccccCCCCcEE
Confidence 57899999999 7778889999999999999999885 110 11222222222222222223568999
Q ss_pred EEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHHHHH
Q 042025 726 LILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVDEAF 805 (844)
Q Consensus 726 LfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~evF 805 (844)
|++||.|+.+. ... .+++.+|.. - .+.+.++.|||.++.+|.++|
T Consensus 119 lv~nK~Dl~~~-----~~~--------------------~~~~~~~~~-----~-----~~~~~~~e~Sa~~~~~v~~~~ 163 (170)
T cd04116 119 VLGNKNDIPER-----QVS--------------------TEEAQAWCR-----E-----NGDYPYFETSAKDATNVAAAF 163 (170)
T ss_pred EEEECcccccc-----ccC--------------------HHHHHHHHH-----H-----CCCCeEEEEECCCCCCHHHHH
Confidence 99999998631 111 123333221 1 123457889999999999999
Q ss_pred HHHHHH
Q 042025 806 KYIREV 811 (844)
Q Consensus 806 ~~V~e~ 811 (844)
+++.+.
T Consensus 164 ~~~~~~ 169 (170)
T cd04116 164 EEAVRR 169 (170)
T ss_pred HHHHhh
Confidence 988653
No 90
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=98.53 E-value=8.2e-07 Score=86.25 Aligned_cols=115 Identities=11% Similarity=0.102 Sum_probs=76.2
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcEE
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFV 725 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpiI 725 (844)
..+++||++|+ ...+..|..++.+++++|+|.|+++ .+ ..+.+..-++.+..+... ...+.|+|
T Consensus 49 ~~l~i~Dt~G~-~~~~~~~~~~~~~~~~~ilv~d~~~-------~~-------s~~~~~~~~~~i~~~~~~-~~~~~pii 112 (165)
T cd04140 49 CTLQITDTTGS-HQFPAMQRLSISKGHAFILVYSVTS-------KQ-------SLEELKPIYELICEIKGN-NIEKIPIM 112 (165)
T ss_pred EEEEEEECCCC-CcchHHHHHHhhcCCEEEEEEECCC-------HH-------HHHHHHHHHHHHHHHhcC-CCCCCCEE
Confidence 57899999999 7777788889999999999999885 11 122333333333333322 23578999
Q ss_pred EEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHHHHH
Q 042025 726 LILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVDEAF 805 (844)
Q Consensus 726 LfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~evF 805 (844)
|++||.|+... ..+. .+.+..|.. . ..+-++.|||+++.+|++.|
T Consensus 113 lv~nK~Dl~~~----~~v~--------------------~~~~~~~~~-----~------~~~~~~e~SA~~g~~v~~~f 157 (165)
T cd04140 113 LVGNKCDESHK----REVS--------------------SNEGAACAT-----E------WNCAFMETSAKTNHNVQELF 157 (165)
T ss_pred EEEECcccccc----Ceec--------------------HHHHHHHHH-----H------hCCcEEEeecCCCCCHHHHH
Confidence 99999998541 1111 122222211 1 12346789999999999999
Q ss_pred HHHHHH
Q 042025 806 KYIREV 811 (844)
Q Consensus 806 ~~V~e~ 811 (844)
+||.+.
T Consensus 158 ~~l~~~ 163 (165)
T cd04140 158 QELLNL 163 (165)
T ss_pred HHHHhc
Confidence 998753
No 91
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.53 E-value=9.8e-07 Score=88.37 Aligned_cols=126 Identities=13% Similarity=0.089 Sum_probs=76.2
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHH-HHHHcCCCCCCCcE
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELF-EMMIRHPCFKDTPF 724 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LF-esI~n~p~f~~tpi 724 (844)
+++++||++|| ...+..+..+|.+++++|+|.|+++ .+-+...+..| ..+-.+ ..++|+
T Consensus 49 ~~l~iwDt~G~-~~~~~~~~~~~~~a~~~ilvfdit~-----------------~~Sf~~~~~~w~~~i~~~--~~~~~i 108 (178)
T cd04131 49 IELSLWDTSGS-PYYDNVRPLCYPDSDAVLICFDISR-----------------PETLDSVLKKWRGEIQEF--CPNTKV 108 (178)
T ss_pred EEEEEEECCCc-hhhhhcchhhcCCCCEEEEEEECCC-----------------hhhHHHHHHHHHHHHHHH--CCCCCE
Confidence 68999999999 6777788889999999999999985 12233332222 222222 146899
Q ss_pred EEEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCC-HHH
Q 042025 725 VLILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVT-VDE 803 (844)
Q Consensus 725 ILfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~-I~e 803 (844)
||+.||.||..+.-....+. +... .. -. .+++.+|- +-. + ....+.|||+++++ |++
T Consensus 109 ilVgnK~DL~~~~~~~~~~~------~~~~-~~--v~---~~e~~~~a-----~~~----~-~~~~~E~SA~~~~~~v~~ 166 (178)
T cd04131 109 LLVGCKTDLRTDLSTLMELS------HQRQ-AP--VS---YEQGCAIA-----KQL----G-AEIYLECSAFTSEKSVRD 166 (178)
T ss_pred EEEEEChhhhcChhHHHHHH------hcCC-CC--CC---HHHHHHHH-----HHh----C-CCEEEECccCcCCcCHHH
Confidence 99999999854210000000 0000 00 00 23343322 111 1 12357899999995 999
Q ss_pred HHHHHHHHHh
Q 042025 804 AFKYIREVLK 813 (844)
Q Consensus 804 vF~~V~e~Ik 813 (844)
+|..+....+
T Consensus 167 ~F~~~~~~~~ 176 (178)
T cd04131 167 IFHVATMACL 176 (178)
T ss_pred HHHHHHHHHh
Confidence 9998877543
No 92
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=98.50 E-value=5.6e-07 Score=86.45 Aligned_cols=113 Identities=17% Similarity=0.205 Sum_probs=76.4
Q ss_pred CceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcE
Q 042025 645 LTKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPF 724 (844)
Q Consensus 645 ~~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpi 724 (844)
..++++||++|+ ...+..|.+++++++++|||+|+++ ...+.+....++.+.... .+.|+
T Consensus 51 ~~~l~i~Dt~G~-~~~~~~~~~~~~~~d~ii~v~d~~~-----------------~~s~~~~~~~~~~~~~~~--~~~p~ 110 (164)
T cd04101 51 TVELFIFDSAGQ-ELYSDMVSNYWESPSVFILVYDVSN-----------------KASFENCSRWVNKVRTAS--KHMPG 110 (164)
T ss_pred EEEEEEEECCCH-HHHHHHHHHHhCCCCEEEEEEECcC-----------------HHHHHHHHHHHHHHHHhC--CCCCE
Confidence 368999999999 6667788899999999999999885 122333334444444332 46899
Q ss_pred EEEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHHHH
Q 042025 725 VLILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVDEA 804 (844)
Q Consensus 725 ILfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~ev 804 (844)
+|++||.|+..+. .+. ...+.. +... ..+.++.+||.++.+|.++
T Consensus 111 ilv~nK~Dl~~~~----~~~--------------------~~~~~~-----~~~~------~~~~~~~~Sa~~~~gi~~l 155 (164)
T cd04101 111 VLVGNKMDLADKA----EVT--------------------DAQAQA-----FAQA------NQLKFFKTSALRGVGYEEP 155 (164)
T ss_pred EEEEECccccccc----CCC--------------------HHHHHH-----HHHH------cCCeEEEEeCCCCCChHHH
Confidence 9999999985420 110 111211 1111 1134678999999999999
Q ss_pred HHHHHHHH
Q 042025 805 FKYIREVL 812 (844)
Q Consensus 805 F~~V~e~I 812 (844)
|+++.+.+
T Consensus 156 ~~~l~~~~ 163 (164)
T cd04101 156 FESLARAF 163 (164)
T ss_pred HHHHHHHh
Confidence 99988765
No 93
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=98.50 E-value=2.1e-06 Score=83.48 Aligned_cols=126 Identities=11% Similarity=0.105 Sum_probs=77.3
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcEE
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFV 725 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpiI 725 (844)
..+++||++|+ ...+..|..++.+++++|+|+|+++ ...+++....|-..+... ..+.|++
T Consensus 48 ~~~~i~Dt~G~-~~~~~~~~~~~~~~~~~ilv~~~~~-----------------~~s~~~~~~~~~~~l~~~-~~~~pii 108 (174)
T cd04135 48 YLLGLYDTAGQ-EDYDRLRPLSYPMTDVFLICFSVVN-----------------PASFQNVKEEWVPELKEY-APNVPYL 108 (174)
T ss_pred EEEEEEeCCCc-ccccccccccCCCCCEEEEEEECCC-----------------HHHHHHHHHHHHHHHHhh-CCCCCEE
Confidence 56889999999 6777889999999999999999875 122323322222222221 4578999
Q ss_pred EEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHHHHH
Q 042025 726 LILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVDEAF 805 (844)
Q Consensus 726 LfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~evF 805 (844)
|+.||.|+..+......+..+ ... . -. .+++..+ ..-. + ..-+..|||+++.||+++|
T Consensus 109 vv~nK~Dl~~~~~~~~~~~~~------~~~-~-v~----~~~~~~~-----~~~~----~-~~~~~e~Sa~~~~gi~~~f 166 (174)
T cd04135 109 LVGTQIDLRDDPKTLARLNDM------KEK-P-VT----VEQGQKL-----AKEI----G-AHCYVECSALTQKGLKTVF 166 (174)
T ss_pred EEeEchhhhcChhhHHHHhhc------cCC-C-CC----HHHHHHH-----HHHc----C-CCEEEEecCCcCCCHHHHH
Confidence 999999987543221111110 000 0 00 2233222 1111 1 1235679999999999999
Q ss_pred HHHHHHH
Q 042025 806 KYIREVL 812 (844)
Q Consensus 806 ~~V~e~I 812 (844)
+.+.+.+
T Consensus 167 ~~~~~~~ 173 (174)
T cd04135 167 DEAILAI 173 (174)
T ss_pred HHHHHHh
Confidence 9887664
No 94
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=98.48 E-value=1.2e-06 Score=84.48 Aligned_cols=113 Identities=15% Similarity=0.171 Sum_probs=77.8
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcEE
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFV 725 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpiI 725 (844)
..+++||++|+ ...+..|..++++++++|||+|+++ .+.+.+....++.+..+ ...+.|++
T Consensus 52 ~~~~l~D~~g~-~~~~~~~~~~~~~~~~~i~v~d~~~-----------------~~s~~~~~~~~~~~~~~-~~~~~pi~ 112 (165)
T cd01868 52 IKAQIWDTAGQ-ERYRAITSAYYRGAVGALLVYDITK-----------------KQTFENVERWLKELRDH-ADSNIVIM 112 (165)
T ss_pred EEEEEEeCCCh-HHHHHHHHHHHCCCCEEEEEEECcC-----------------HHHHHHHHHHHHHHHHh-CCCCCeEE
Confidence 57899999999 6667788889999999999999985 22333444444444443 23468999
Q ss_pred EEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHHHHH
Q 042025 726 LILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVDEAF 805 (844)
Q Consensus 726 LfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~evF 805 (844)
|++||.|+...+ .+. .++...+ ... ..+.++.+||.++.+|+++|
T Consensus 113 vv~nK~Dl~~~~----~~~--------------------~~~~~~~-----~~~------~~~~~~~~Sa~~~~~v~~l~ 157 (165)
T cd01868 113 LVGNKSDLRHLR----AVP--------------------TEEAKAF-----AEK------NGLSFIETSALDGTNVEEAF 157 (165)
T ss_pred EEEECccccccc----cCC--------------------HHHHHHH-----HHH------cCCEEEEEECCCCCCHHHHH
Confidence 999999986431 010 1222221 111 13457889999999999999
Q ss_pred HHHHHHH
Q 042025 806 KYIREVL 812 (844)
Q Consensus 806 ~~V~e~I 812 (844)
+++.+.|
T Consensus 158 ~~l~~~i 164 (165)
T cd01868 158 KQLLTEI 164 (165)
T ss_pred HHHHHHh
Confidence 9988664
No 95
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=98.48 E-value=1.3e-06 Score=86.31 Aligned_cols=116 Identities=14% Similarity=0.170 Sum_probs=77.6
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcEE
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFV 725 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpiI 725 (844)
.++++||++|+ ...+..|..+|.+++++|+|+|+++ ..-+......++.+.+...-.+.|+|
T Consensus 49 ~~l~i~Dt~G~-~~~~~~~~~~~~~ad~~ilv~d~~~-----------------~~s~~~~~~~~~~~~~~~~~~~~~ii 110 (170)
T cd04108 49 FSLQLWDTAGQ-ERFKCIASTYYRGAQAIIIVFDLTD-----------------VASLEHTRQWLEDALKENDPSSVLLF 110 (170)
T ss_pred EEEEEEeCCCh-HHHHhhHHHHhcCCCEEEEEEECcC-----------------HHHHHHHHHHHHHHHHhcCCCCCeEE
Confidence 57999999999 6777889999999999999999975 11222334455555554433567899
Q ss_pred EEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHHHHH
Q 042025 726 LILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVDEAF 805 (844)
Q Consensus 726 LfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~evF 805 (844)
|+.||.|+-.+ ..... . .+.+..+ ... . ..-++.|||.++.+|.++|
T Consensus 111 lVgnK~Dl~~~----~~~~~---------------~---~~~~~~~-----~~~---~---~~~~~e~Sa~~g~~v~~lf 157 (170)
T cd04108 111 LVGTKKDLSSP----AQYAL---------------M---EQDAIKL-----AAE---M---QAEYWSVSALSGENVREFF 157 (170)
T ss_pred EEEEChhcCcc----ccccc---------------c---HHHHHHH-----HHH---c---CCeEEEEECCCCCCHHHHH
Confidence 99999997432 01100 0 1122221 111 1 1224678999999999999
Q ss_pred HHHHHHH
Q 042025 806 KYIREVL 812 (844)
Q Consensus 806 ~~V~e~I 812 (844)
+++...+
T Consensus 158 ~~l~~~~ 164 (170)
T cd04108 158 FRVAALT 164 (170)
T ss_pred HHHHHHH
Confidence 9998766
No 96
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.47 E-value=7.5e-07 Score=86.17 Aligned_cols=113 Identities=16% Similarity=0.173 Sum_probs=78.2
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcEE
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFV 725 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpiI 725 (844)
..+++||++|+ ...+..|.+++.+++++|+|+|+++ ...+.+....++.+..+. -.+.|+|
T Consensus 52 ~~l~i~D~~G~-~~~~~~~~~~~~~~d~~llv~d~~~-----------------~~s~~~~~~~~~~i~~~~-~~~~p~i 112 (165)
T cd01864 52 VKLQIWDTAGQ-ERFRTITQSYYRSANGAIIAYDITR-----------------RSSFESVPHWIEEVEKYG-ASNVVLL 112 (165)
T ss_pred EEEEEEECCCh-HHHHHHHHHHhccCCEEEEEEECcC-----------------HHHHHhHHHHHHHHHHhC-CCCCcEE
Confidence 46889999999 6677789999999999999999985 122334445555554432 2468999
Q ss_pred EEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHHHHH
Q 042025 726 LILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVDEAF 805 (844)
Q Consensus 726 LfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~evF 805 (844)
|+.||.|+.+.+ +.. .+.+..+. +. .+.+.+..+||.++.+++++|
T Consensus 113 vv~nK~Dl~~~~----~~~--------------------~~~~~~~~-----~~-----~~~~~~~e~Sa~~~~~v~~~~ 158 (165)
T cd01864 113 LIGNKCDLEEQR----EVL--------------------FEEACTLA-----EK-----NGMLAVLETSAKESQNVEEAF 158 (165)
T ss_pred EEEECccccccc----ccC--------------------HHHHHHHH-----HH-----cCCcEEEEEECCCCCCHHHHH
Confidence 999999997531 000 12222211 11 123567889999999999999
Q ss_pred HHHHHH
Q 042025 806 KYIREV 811 (844)
Q Consensus 806 ~~V~e~ 811 (844)
.++.+.
T Consensus 159 ~~l~~~ 164 (165)
T cd01864 159 LLMATE 164 (165)
T ss_pred HHHHHh
Confidence 998754
No 97
>PLN03108 Rab family protein; Provisional
Probab=98.47 E-value=1.8e-06 Score=88.35 Aligned_cols=117 Identities=15% Similarity=0.150 Sum_probs=81.9
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcEE
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFV 725 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpiI 725 (844)
+.+++||+.|+ ...+..|..++.+++++|||+|+++ ...+......+..+.... -.+.|+|
T Consensus 55 i~l~l~Dt~G~-~~~~~~~~~~~~~ad~~vlv~D~~~-----------------~~s~~~l~~~~~~~~~~~-~~~~pii 115 (210)
T PLN03108 55 IKLQIWDTAGQ-ESFRSITRSYYRGAAGALLVYDITR-----------------RETFNHLASWLEDARQHA-NANMTIM 115 (210)
T ss_pred EEEEEEeCCCc-HHHHHHHHHHhccCCEEEEEEECCc-----------------HHHHHHHHHHHHHHHHhc-CCCCcEE
Confidence 57899999999 6777789999999999999999985 223333334445444332 2468999
Q ss_pred EEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHHHHH
Q 042025 726 LILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVDEAF 805 (844)
Q Consensus 726 LfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~evF 805 (844)
|++||.|+..++ .++ .+++.+|. .. ..+.++.++|.++.+|+++|
T Consensus 116 iv~nK~Dl~~~~----~~~--------------------~~~~~~~~-----~~------~~~~~~e~Sa~~~~~v~e~f 160 (210)
T PLN03108 116 LIGNKCDLAHRR----AVS--------------------TEEGEQFA-----KE------HGLIFMEASAKTAQNVEEAF 160 (210)
T ss_pred EEEECccCcccc----CCC--------------------HHHHHHHH-----HH------cCCEEEEEeCCCCCCHHHHH
Confidence 999999986531 111 12222222 11 12457889999999999999
Q ss_pred HHHHHHHhhhh
Q 042025 806 KYIREVLKWDD 816 (844)
Q Consensus 806 ~~V~e~Ik~~~ 816 (844)
.|+.+.+..+.
T Consensus 161 ~~l~~~~~~~~ 171 (210)
T PLN03108 161 IKTAAKIYKKI 171 (210)
T ss_pred HHHHHHHHHHh
Confidence 99998886543
No 98
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=98.46 E-value=6.9e-07 Score=87.33 Aligned_cols=115 Identities=22% Similarity=0.275 Sum_probs=78.8
Q ss_pred ceEEEEEeCCCCCCCc-ccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcE
Q 042025 646 TKYQLIRVNAKGMNEG-CKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPF 724 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR-~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpi 724 (844)
..+++||++|+ ...+ ..|.+++.+++++|||+|+++ ...+......++.+..+..-.+.|+
T Consensus 51 ~~~~i~Dt~G~-~~~~~~~~~~~~~~~d~~i~v~d~~~-----------------~~s~~~~~~~~~~~~~~~~~~~~p~ 112 (170)
T cd04115 51 IKVQLWDTAGQ-ERFRKSMVQHYYRNVHAVVFVYDVTN-----------------MASFHSLPSWIEECEQHSLPNEVPR 112 (170)
T ss_pred EEEEEEeCCCh-HHHHHhhHHHhhcCCCEEEEEEECCC-----------------HHHHHhHHHHHHHHHHhcCCCCCCE
Confidence 57899999999 5554 468899999999999999984 2233444455555555444467999
Q ss_pred EEEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecC---CCCH
Q 042025 725 VLILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARD---RVTV 801 (844)
Q Consensus 725 ILfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtD---te~I 801 (844)
||++||.|+...+ .+. .+.+.. |... ..+.++.|||++ ..+|
T Consensus 113 iiv~nK~Dl~~~~----~~~--------------------~~~~~~-----~~~~------~~~~~~e~Sa~~~~~~~~i 157 (170)
T cd04115 113 ILVGNKCDLREQI----QVP--------------------TDLAQR-----FADA------HSMPLFETSAKDPSENDHV 157 (170)
T ss_pred EEEEECccchhhc----CCC--------------------HHHHHH-----HHHH------cCCcEEEEeccCCcCCCCH
Confidence 9999999987531 111 112222 2111 124467799998 8999
Q ss_pred HHHHHHHHHHHh
Q 042025 802 DEAFKYIREVLK 813 (844)
Q Consensus 802 ~evF~~V~e~Ik 813 (844)
++.|.++...++
T Consensus 158 ~~~f~~l~~~~~ 169 (170)
T cd04115 158 EAIFMTLAHKLK 169 (170)
T ss_pred HHHHHHHHHHhh
Confidence 999999987663
No 99
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=98.46 E-value=9.1e-07 Score=84.90 Aligned_cols=112 Identities=13% Similarity=0.103 Sum_probs=76.9
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcEE
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFV 725 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpiI 725 (844)
..+++||++|+ ...+..|.+++.+++++|||+|+++-. .+......++.+... .-.+.|++
T Consensus 49 ~~l~l~D~~G~-~~~~~~~~~~~~~~~~~i~v~d~~~~~-----------------s~~~~~~~~~~~~~~-~~~~~~ii 109 (161)
T cd04113 49 VKLQIWDTAGQ-ERFRSVTRSYYRGAAGALLVYDITNRT-----------------SFEALPTWLSDARAL-ASPNIVVI 109 (161)
T ss_pred EEEEEEECcch-HHHHHhHHHHhcCCCEEEEEEECCCHH-----------------HHHHHHHHHHHHHHh-CCCCCeEE
Confidence 46889999999 677778999999999999999998621 122223334433221 12468999
Q ss_pred EEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHHHHH
Q 042025 726 LILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVDEAF 805 (844)
Q Consensus 726 LfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~evF 805 (844)
|++||.|+..++ ... .+.+..+... ..+.++.+||.++.+|++.|
T Consensus 110 vv~nK~D~~~~~----~~~--------------------~~~~~~~~~~-----------~~~~~~~~Sa~~~~~i~~~~ 154 (161)
T cd04113 110 LVGNKSDLADQR----EVT--------------------FLEASRFAQE-----------NGLLFLETSALTGENVEEAF 154 (161)
T ss_pred EEEEchhcchhc----cCC--------------------HHHHHHHHHH-----------cCCEEEEEECCCCCCHHHHH
Confidence 999999997521 110 2233222211 12668899999999999999
Q ss_pred HHHHHH
Q 042025 806 KYIREV 811 (844)
Q Consensus 806 ~~V~e~ 811 (844)
+++...
T Consensus 155 ~~~~~~ 160 (161)
T cd04113 155 LKCARS 160 (161)
T ss_pred HHHHHh
Confidence 998765
No 100
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=98.46 E-value=9.5e-07 Score=82.44 Aligned_cols=110 Identities=13% Similarity=0.217 Sum_probs=77.5
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcEE
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFV 725 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpiI 725 (844)
..+.+||++|+ ...+..|..++.+++++|||+|+++ .+.+.+...++..+..... .+.|++
T Consensus 49 ~~~~l~D~~g~-~~~~~~~~~~~~~~d~ii~v~d~~~-----------------~~~~~~~~~~~~~~~~~~~-~~~p~i 109 (159)
T cd00154 49 VKLQIWDTAGQ-ERFRSITPSYYRGAHGAILVYDITN-----------------RESFENLDKWLKELKEYAP-ENIPII 109 (159)
T ss_pred EEEEEEecCCh-HHHHHHHHHHhcCCCEEEEEEECCC-----------------HHHHHHHHHHHHHHHHhCC-CCCcEE
Confidence 67899999999 6777789999999999999999985 1223444455555555432 468999
Q ss_pred EEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHHHHH
Q 042025 726 LILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVDEAF 805 (844)
Q Consensus 726 LfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~evF 805 (844)
|++||.|+... .. .. .+.+.++. .. ..+.+..++|.++.++.++|
T Consensus 110 vv~nK~D~~~~------~~---------------~~---~~~~~~~~-----~~------~~~~~~~~sa~~~~~i~~~~ 154 (159)
T cd00154 110 LVGNKIDLEDQ------RQ---------------VS---TEEAQQFA-----KE------NGLLFFETSAKTGENVEELF 154 (159)
T ss_pred EEEEccccccc------cc---------------cc---HHHHHHHH-----HH------cCCeEEEEecCCCCCHHHHH
Confidence 99999998621 00 00 12222222 11 24568999999999999999
Q ss_pred HHHH
Q 042025 806 KYIR 809 (844)
Q Consensus 806 ~~V~ 809 (844)
+++.
T Consensus 155 ~~i~ 158 (159)
T cd00154 155 QSLA 158 (159)
T ss_pred HHHh
Confidence 9875
No 101
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=98.45 E-value=7.3e-07 Score=87.46 Aligned_cols=119 Identities=13% Similarity=0.201 Sum_probs=88.8
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcEE
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFV 725 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpiI 725 (844)
..+++||++|+ ...+..|..++.+++++|||+|.++ .+.+++...++..+++.....+.|+|
T Consensus 49 ~~~~l~D~~g~-~~~~~~~~~~~~~~~~~i~v~d~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~p~i 110 (180)
T cd04137 49 YHLEIVDTAGQ-DEYSILPQKYSIGIHGYILVYSVTS-----------------RKSFEVVKVIYDKILDMLGKESVPIV 110 (180)
T ss_pred EEEEEEECCCh-HhhHHHHHHHHhhCCEEEEEEECCC-----------------HHHHHHHHHHHHHHHHhcCCCCCCEE
Confidence 35789999999 6778889999999999999999885 34566778888888887656678999
Q ss_pred EEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHHHHH
Q 042025 726 LILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVDEAF 805 (844)
Q Consensus 726 LfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~evF 805 (844)
|+.||.|+...+ .+. .+.... +... ..+.+..+||.++.++.++|
T Consensus 111 lv~NK~Dl~~~~----~~~--------------------~~~~~~-----~~~~------~~~~~~~~Sa~~~~gv~~l~ 155 (180)
T cd04137 111 LVGNKSDLHTQR----QVS--------------------TEEGKE-----LAES------WGAAFLESSARENENVEEAF 155 (180)
T ss_pred EEEEchhhhhcC----ccC--------------------HHHHHH-----HHHH------cCCeEEEEeCCCCCCHHHHH
Confidence 999999986421 010 111111 1111 12567889999999999999
Q ss_pred HHHHHHHhhhhh
Q 042025 806 KYIREVLKWDDE 817 (844)
Q Consensus 806 ~~V~e~Ik~~~~ 817 (844)
.|+.+.+.....
T Consensus 156 ~~l~~~~~~~~~ 167 (180)
T cd04137 156 ELLIEEIEKVEN 167 (180)
T ss_pred HHHHHHHHHhcC
Confidence 999998865543
No 102
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=98.44 E-value=6.1e-07 Score=85.72 Aligned_cols=113 Identities=17% Similarity=0.189 Sum_probs=79.7
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcEE
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFV 725 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpiI 725 (844)
.++++||++|+ ...+..|..++.+++++|||+|+++ .+.+.+....+..+.... -.+.|++
T Consensus 49 ~~l~~~D~~G~-~~~~~~~~~~~~~~~~ii~v~d~~~-----------------~~s~~~~~~~~~~~~~~~-~~~~~ii 109 (161)
T cd01861 49 VRLQLWDTAGQ-ERFRSLIPSYIRDSSVAVVVYDITN-----------------RQSFDNTDKWIDDVRDER-GNDVIIV 109 (161)
T ss_pred EEEEEEECCCc-HHHHHHHHHHhccCCEEEEEEECcC-----------------HHHHHHHHHHHHHHHHhC-CCCCEEE
Confidence 46899999999 6777889999999999999999875 234455556666665432 2379999
Q ss_pred EEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHHHHH
Q 042025 726 LILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVDEAF 805 (844)
Q Consensus 726 LfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~evF 805 (844)
|++||.|+...+ ... .+.+..+.. . ..+.+..+||.++.++++.|
T Consensus 110 lv~nK~D~~~~~----~~~--------------------~~~~~~~~~--------~---~~~~~~~~Sa~~~~~v~~l~ 154 (161)
T cd01861 110 LVGNKTDLSDKR----QVS--------------------TEEGEKKAK--------E---LNAMFIETSAKAGHNVKELF 154 (161)
T ss_pred EEEEChhccccC----ccC--------------------HHHHHHHHH--------H---hCCEEEEEeCCCCCCHHHHH
Confidence 999999986321 000 122222111 1 12557789999999999999
Q ss_pred HHHHHHH
Q 042025 806 KYIREVL 812 (844)
Q Consensus 806 ~~V~e~I 812 (844)
+++.+.+
T Consensus 155 ~~i~~~l 161 (161)
T cd01861 155 RKIASAL 161 (161)
T ss_pred HHHHHhC
Confidence 9998753
No 103
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=98.44 E-value=3.4e-06 Score=82.07 Aligned_cols=125 Identities=14% Similarity=0.215 Sum_probs=75.4
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcEE
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFV 725 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpiI 725 (844)
..+++||++|+ ...+..|..++.+++++++|.|+++- ..+......|...+.+ ...+.|++
T Consensus 49 ~~l~i~Dt~G~-~~~~~~~~~~~~~~d~~i~v~~~~~~-----------------~s~~~~~~~~~~~~~~-~~~~~pii 109 (175)
T cd01870 49 VELALWDTAGQ-EDYDRLRPLSYPDTDVILMCFSIDSP-----------------DSLENIPEKWTPEVKH-FCPNVPII 109 (175)
T ss_pred EEEEEEeCCCc-hhhhhccccccCCCCEEEEEEECCCH-----------------HHHHHHHHHHHHHHHh-hCCCCCEE
Confidence 57899999999 67778888899999999999998751 1122222222222222 23478999
Q ss_pred EEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHHHHH
Q 042025 726 LILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVDEAF 805 (844)
Q Consensus 726 LfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~evF 805 (844)
|++||.|+..+......+.. ..+.. -. ...+.+ +... -..+.++.|||.++.+|+++|
T Consensus 110 lv~nK~Dl~~~~~~~~~i~~---~~~~~------v~---~~~~~~-----~~~~-----~~~~~~~~~Sa~~~~~v~~lf 167 (175)
T cd01870 110 LVGNKKDLRNDEHTRRELAK---MKQEP------VK---PEEGRD-----MANK-----IGAFGYMECSAKTKEGVREVF 167 (175)
T ss_pred EEeeChhcccChhhhhhhhh---ccCCC------cc---HHHHHH-----HHHH-----cCCcEEEEeccccCcCHHHHH
Confidence 99999998753111101110 00000 00 122221 1111 123357789999999999999
Q ss_pred HHHHHH
Q 042025 806 KYIREV 811 (844)
Q Consensus 806 ~~V~e~ 811 (844)
+++...
T Consensus 168 ~~l~~~ 173 (175)
T cd01870 168 EMATRA 173 (175)
T ss_pred HHHHHH
Confidence 998754
No 104
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=98.43 E-value=1.8e-06 Score=82.18 Aligned_cols=115 Identities=14% Similarity=0.238 Sum_probs=80.8
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcEE
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFV 725 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpiI 725 (844)
..+++||++|+ ......|..++.+++++|+|+|+++ ...+......+..+.......+.|++
T Consensus 48 ~~~~i~D~~g~-~~~~~~~~~~~~~~~~~i~v~d~~~-----------------~~s~~~~~~~~~~~~~~~~~~~~pii 109 (164)
T cd04139 48 VQLNILDTAGQ-EDYAAIRDNYHRSGEGFLLVFSITD-----------------MESFTATAEFREQILRVKDDDNVPLL 109 (164)
T ss_pred EEEEEEECCCh-hhhhHHHHHHhhcCCEEEEEEECCC-----------------HHHHHHHHHHHHHHHHhcCCCCCCEE
Confidence 57999999999 6777788889999999999999874 22344445555555554335579999
Q ss_pred EEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHHHHH
Q 042025 726 LILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVDEAF 805 (844)
Q Consensus 726 LfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~evF 805 (844)
|++||.|+..++ .. . .+....+. ..+ .+-+..+||+++++|++.|
T Consensus 110 iv~NK~D~~~~~----~~-----------------~---~~~~~~~~----~~~-------~~~~~~~Sa~~~~gi~~l~ 154 (164)
T cd04139 110 LVGNKCDLEDKR----QV-----------------S---SEEAANLA----RQW-------GVPYVETSAKTRQNVEKAF 154 (164)
T ss_pred EEEEcccccccc----cc-----------------C---HHHHHHHH----HHh-------CCeEEEeeCCCCCCHHHHH
Confidence 999999987521 00 0 11211111 111 1347899999999999999
Q ss_pred HHHHHHHh
Q 042025 806 KYIREVLK 813 (844)
Q Consensus 806 ~~V~e~Ik 813 (844)
+++.+.+.
T Consensus 155 ~~l~~~~~ 162 (164)
T cd04139 155 YDLVREIR 162 (164)
T ss_pred HHHHHHHH
Confidence 99988764
No 105
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=98.41 E-value=2.5e-06 Score=87.02 Aligned_cols=120 Identities=15% Similarity=0.161 Sum_probs=79.1
Q ss_pred ceEEEEEeCCCCC---CCcccce----eccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCC
Q 042025 646 TKYQLIRVNAKGM---NEGCKWV----EMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPC 718 (844)
Q Consensus 646 ~~~~liDVGGQ~r---seR~KW~----~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~ 718 (844)
..+++||++|+.. ..+..|. .++.+++++|||+|+++ ...++....+++.+.+...
T Consensus 49 ~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ad~iilv~D~~~-----------------~~S~~~~~~~~~~i~~~~~ 111 (198)
T cd04142 49 YDLHILDVPNMQRYPGTAGQEWMDPRFRGLRNSRAFILVYDICS-----------------PDSFHYVKLLRQQILETRP 111 (198)
T ss_pred EEEEEEeCCCcccCCccchhHHHHHHHhhhccCCEEEEEEECCC-----------------HHHHHHHHHHHHHHHHhcc
Confidence 5788999998621 1223333 35789999999999885 3445556667777776542
Q ss_pred --CCCCcEEEEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeec
Q 042025 719 --FKDTPFVLILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARAR 796 (844)
Q Consensus 719 --f~~tpiILfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~At 796 (844)
..+.|++|++||.|+..++. . . .+.+.++.. + ...+-++.|||.
T Consensus 112 ~~~~~~piiivgNK~Dl~~~~~-----~----------------~---~~~~~~~~~----~------~~~~~~~e~Sak 157 (198)
T cd04142 112 AGNKEPPIVVVGNKRDQQRHRF-----A----------------P---RHVLSVLVR----K------SWKCGYLECSAK 157 (198)
T ss_pred cCCCCCCEEEEEECcccccccc-----c----------------c---HHHHHHHHH----H------hcCCcEEEecCC
Confidence 46799999999999965321 0 0 111111111 0 113447899999
Q ss_pred CCCCHHHHHHHHHHHHhhhh
Q 042025 797 DRVTVDEAFKYIREVLKWDD 816 (844)
Q Consensus 797 Dte~I~evF~~V~e~Ik~~~ 816 (844)
++.||++.|..+.+.+....
T Consensus 158 ~g~~v~~lf~~i~~~~~~~~ 177 (198)
T cd04142 158 YNWHILLLFKELLISATTRG 177 (198)
T ss_pred CCCCHHHHHHHHHHHhhccC
Confidence 99999999998887665433
No 106
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.40 E-value=2e-06 Score=85.61 Aligned_cols=120 Identities=18% Similarity=0.205 Sum_probs=81.2
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcEE
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFV 725 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpiI 725 (844)
..+++||++|+ ...+..|..++.+++++|||+|+++ ...+.....++..+.... -.+.|+|
T Consensus 49 ~~~~i~Dt~g~-~~~~~~~~~~~~~~d~iilv~d~~~-----------------~~s~~~i~~~~~~i~~~~-~~~~~~i 109 (188)
T cd04125 49 IKLQIWDTNGQ-ERFRSLNNSYYRGAHGYLLVYDVTD-----------------QESFENLKFWINEINRYA-RENVIKV 109 (188)
T ss_pred EEEEEEECCCc-HHHHhhHHHHccCCCEEEEEEECcC-----------------HHHHHHHHHHHHHHHHhC-CCCCeEE
Confidence 57899999999 6777789999999999999999885 122233333444443321 2347999
Q ss_pred EEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHHHHH
Q 042025 726 LILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVDEAF 805 (844)
Q Consensus 726 LfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~evF 805 (844)
|++||.|+.+.+ ... .+.+..|. .. ..+.+..+||.++.+|+++|
T Consensus 110 vv~nK~Dl~~~~----~v~--------------------~~~~~~~~-----~~------~~~~~~evSa~~~~~i~~~f 154 (188)
T cd04125 110 IVANKSDLVNNK----VVD--------------------SNIAKSFC-----DS------LNIPFFETSAKQSINVEEAF 154 (188)
T ss_pred EEEECCCCcccc----cCC--------------------HHHHHHHH-----HH------cCCeEEEEeCCCCCCHHHHH
Confidence 999999987531 111 12222221 11 12346789999999999999
Q ss_pred HHHHHHHhhhhhcc
Q 042025 806 KYIREVLKWDDEKE 819 (844)
Q Consensus 806 ~~V~e~Ik~~~~k~ 819 (844)
.++.+.+.......
T Consensus 155 ~~l~~~~~~~~~~~ 168 (188)
T cd04125 155 ILLVKLIIKRLEEQ 168 (188)
T ss_pred HHHHHHHHHHhhcC
Confidence 99999887654433
No 107
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=98.40 E-value=1e-06 Score=83.40 Aligned_cols=114 Identities=18% Similarity=0.220 Sum_probs=81.1
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcEE
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFV 725 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpiI 725 (844)
.++++||++|+ ......|..++.+++++|+|+|+++ ...+.+...++..+.+...-...|++
T Consensus 47 ~~~~l~D~~g~-~~~~~~~~~~~~~~~~~i~v~d~~~-----------------~~s~~~~~~~~~~~~~~~~~~~~p~i 108 (160)
T cd00876 47 YTLDILDTAGQ-EEFSAMRDLYIRQGDGFILVYSITD-----------------RESFEEIKGYREQILRVKDDEDIPIV 108 (160)
T ss_pred EEEEEEECCCh-HHHHHHHHHHHhcCCEEEEEEECCC-----------------HHHHHHHHHHHHHHHHhcCCCCCcEE
Confidence 46889999999 6667788889999999999999875 22344555666666664433579999
Q ss_pred EEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHHHHH
Q 042025 726 LILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVDEAF 805 (844)
Q Consensus 726 LfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~evF 805 (844)
|++||+|+...+ .+. .+.+..+..+ ..+.+..++|.++.+++++|
T Consensus 109 vv~nK~D~~~~~----~~~--------------------~~~~~~~~~~-----------~~~~~~~~S~~~~~~i~~l~ 153 (160)
T cd00876 109 LVGNKCDLENER----QVS--------------------KEEGKALAKE-----------WGCPFIETSAKDNINIDEVF 153 (160)
T ss_pred EEEECCcccccc----eec--------------------HHHHHHHHHH-----------cCCcEEEeccCCCCCHHHHH
Confidence 999999987621 110 2233332211 11457899999999999999
Q ss_pred HHHHHHH
Q 042025 806 KYIREVL 812 (844)
Q Consensus 806 ~~V~e~I 812 (844)
.+|.+.|
T Consensus 154 ~~l~~~i 160 (160)
T cd00876 154 KLLVREI 160 (160)
T ss_pred HHHHhhC
Confidence 9998753
No 108
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=98.40 E-value=1.8e-06 Score=82.40 Aligned_cols=114 Identities=13% Similarity=0.179 Sum_probs=79.0
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcEE
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFV 725 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpiI 725 (844)
..+++||++|+ ......|..++.+++++|||+|+++ .+.+++...++..+..+.. .+.|++
T Consensus 49 ~~~~l~D~~G~-~~~~~~~~~~~~~~d~~ilv~d~~~-----------------~~s~~~~~~~l~~~~~~~~-~~~piv 109 (164)
T smart00175 49 VKLQIWDTAGQ-ERFRSITSSYYRGAVGALLVYDITN-----------------RESFENLKNWLKELREYAD-PNVVIM 109 (164)
T ss_pred EEEEEEECCCh-HHHHHHHHHHhCCCCEEEEEEECCC-----------------HHHHHHHHHHHHHHHHhCC-CCCeEE
Confidence 46889999999 5666788899999999999999885 2334444444444444322 479999
Q ss_pred EEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHHHHH
Q 042025 726 LILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVDEAF 805 (844)
Q Consensus 726 LfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~evF 805 (844)
|++||.|+... ... . .+.+.++. .. ..+.++.+||+++.+++++|
T Consensus 110 vv~nK~D~~~~----~~~-----------------~---~~~~~~~~-----~~------~~~~~~e~Sa~~~~~i~~l~ 154 (164)
T smart00175 110 LVGNKSDLEDQ----RQV-----------------S---REEAEAFA-----EE------HGLPFFETSAKTNTNVEEAF 154 (164)
T ss_pred EEEEchhcccc----cCC-----------------C---HHHHHHHH-----HH------cCCeEEEEeCCCCCCHHHHH
Confidence 99999996541 001 0 23333322 11 12347889999999999999
Q ss_pred HHHHHHHh
Q 042025 806 KYIREVLK 813 (844)
Q Consensus 806 ~~V~e~Ik 813 (844)
+++.+.+.
T Consensus 155 ~~i~~~~~ 162 (164)
T smart00175 155 EELAREIL 162 (164)
T ss_pred HHHHHHHh
Confidence 99998774
No 109
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=98.38 E-value=2.2e-06 Score=83.54 Aligned_cols=119 Identities=13% Similarity=0.241 Sum_probs=77.5
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcEE
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFV 725 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpiI 725 (844)
.++++||+.|+ ...+..|..++.+++++|||+|+++- ..+.+....|...+.... .+.|++
T Consensus 47 ~~~~i~Dt~G~-~~~~~~~~~~~~~ad~~ilv~d~~~~-----------------~s~~~~~~~~~~~i~~~~-~~~pvi 107 (166)
T cd01893 47 VPTTIVDTSSR-PQDRANLAAEIRKANVICLVYSVDRP-----------------STLERIRTKWLPLIRRLG-VKVPII 107 (166)
T ss_pred EEEEEEeCCCc-hhhhHHHhhhcccCCEEEEEEECCCH-----------------HHHHHHHHHHHHHHHHhC-CCCCEE
Confidence 57899999999 66777888889999999999998751 112222222222222211 278999
Q ss_pred EEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHHHHH
Q 042025 726 LILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVDEAF 805 (844)
Q Consensus 726 LfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~evF 805 (844)
|++||+|+...+... . .++....+..+|..+ ..+..|||+++.+++++|
T Consensus 108 iv~nK~Dl~~~~~~~---~--------------------~~~~~~~~~~~~~~~--------~~~~e~Sa~~~~~v~~lf 156 (166)
T cd01893 108 LVGNKSDLRDGSSQA---G--------------------LEEEMLPIMNEFREI--------ETCVECSAKTLINVSEVF 156 (166)
T ss_pred EEEEchhcccccchh---H--------------------HHHHHHHHHHHHhcc--------cEEEEeccccccCHHHHH
Confidence 999999997542100 0 111122233333211 136689999999999999
Q ss_pred HHHHHHHhh
Q 042025 806 KYIREVLKW 814 (844)
Q Consensus 806 ~~V~e~Ik~ 814 (844)
..+.+++.+
T Consensus 157 ~~~~~~~~~ 165 (166)
T cd01893 157 YYAQKAVLH 165 (166)
T ss_pred HHHHHHhcC
Confidence 999888764
No 110
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=98.37 E-value=3.1e-06 Score=81.91 Aligned_cols=116 Identities=12% Similarity=0.198 Sum_probs=74.5
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCC-CCCCcE
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPC-FKDTPF 724 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~-f~~tpi 724 (844)
+++++||++|+.+.....|..++.+++++|||+|+++ .+.+.....+++.+..... ..+.|+
T Consensus 47 ~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~-----------------~~s~~~~~~~~~~~~~~~~~~~~~pi 109 (165)
T cd04146 47 VSLEILDTAGQQQADTEQLERSIRWADGFVLVYSITD-----------------RSSFDEISQLKQLIREIKKRDREIPV 109 (165)
T ss_pred EEEEEEECCCCcccccchHHHHHHhCCEEEEEEECCC-----------------HHHHHHHHHHHHHHHHHhcCCCCCCE
Confidence 5789999999932234567888999999999999985 1223333333333333221 347999
Q ss_pred EEEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCC-CCHHH
Q 042025 725 VLILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDR-VTVDE 803 (844)
Q Consensus 725 ILfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDt-e~I~e 803 (844)
||++||.|+..++ .+. .+++..+ .... + .-++.+||.++ .+|++
T Consensus 110 ilv~nK~Dl~~~~----~v~--------------------~~~~~~~-----~~~~----~--~~~~e~Sa~~~~~~v~~ 154 (165)
T cd04146 110 ILVGNKADLLHYR----QVS--------------------TEEGEKL-----ASEL----G--CLFFEVSAAEDYDGVHS 154 (165)
T ss_pred EEEEECCchHHhC----ccC--------------------HHHHHHH-----HHHc----C--CEEEEeCCCCCchhHHH
Confidence 9999999986531 111 1222222 1111 1 23568899988 59999
Q ss_pred HHHHHHHHHh
Q 042025 804 AFKYIREVLK 813 (844)
Q Consensus 804 vF~~V~e~Ik 813 (844)
+|.++.+.+.
T Consensus 155 ~f~~l~~~~~ 164 (165)
T cd04146 155 VFHELCREVR 164 (165)
T ss_pred HHHHHHHHHh
Confidence 9999987654
No 111
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=98.37 E-value=2e-06 Score=82.24 Aligned_cols=111 Identities=16% Similarity=0.251 Sum_probs=74.4
Q ss_pred CceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcE
Q 042025 645 LTKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPF 724 (844)
Q Consensus 645 ~~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpi 724 (844)
..++++||++|| ...+..|..+|.+++++|+|.|+++-+ .+.......+.+-. ...+.|+
T Consensus 50 ~~~~~i~D~~G~-~~~~~~~~~~~~~~~~~v~v~d~~~~~-----------------s~~~l~~~~~~~~~--~~~~~p~ 109 (162)
T cd04106 50 DVRLMLWDTAGQ-EEFDAITKAYYRGAQACILVFSTTDRE-----------------SFEAIESWKEKVEA--ECGDIPM 109 (162)
T ss_pred EEEEEEeeCCch-HHHHHhHHHHhcCCCEEEEEEECCCHH-----------------HHHHHHHHHHHHHH--hCCCCCE
Confidence 368999999999 677788999999999999999988521 22222222222211 2347899
Q ss_pred EEEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHHHH
Q 042025 725 VLILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVDEA 804 (844)
Q Consensus 725 ILfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~ev 804 (844)
+|++||.|+..+. ..+ .+++..+. +.. .+.+..+||.++.++++.
T Consensus 110 iiv~nK~Dl~~~~----~v~--------------------~~~~~~~~-----~~~------~~~~~~~Sa~~~~~v~~l 154 (162)
T cd04106 110 VLVQTKIDLLDQA----VIT--------------------NEEAEALA-----KRL------QLPLFRTSVKDDFNVTEL 154 (162)
T ss_pred EEEEEChhccccc----CCC--------------------HHHHHHHH-----HHc------CCeEEEEECCCCCCHHHH
Confidence 9999999996531 111 12332221 111 134678999999999999
Q ss_pred HHHHHH
Q 042025 805 FKYIRE 810 (844)
Q Consensus 805 F~~V~e 810 (844)
|+++.+
T Consensus 155 ~~~l~~ 160 (162)
T cd04106 155 FEYLAE 160 (162)
T ss_pred HHHHHH
Confidence 999865
No 112
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.37 E-value=1.5e-06 Score=83.95 Aligned_cols=113 Identities=16% Similarity=0.183 Sum_probs=75.4
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcEE
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFV 725 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpiI 725 (844)
..+.+||++|+ ...+..|..+|..++++|||+|+++-+ ...++.+-+..+..... .+.|+|
T Consensus 56 ~~~~~~D~~g~-~~~~~~~~~~~~~~d~~i~v~d~~~~~--------------s~~~~~~~~~~l~~~~~----~~~~~i 116 (169)
T cd04114 56 IKLQIWDTAGQ-ERFRSITQSYYRSANALILTYDITCEE--------------SFRCLPEWLREIEQYAN----NKVITI 116 (169)
T ss_pred EEEEEEECCCc-HHHHHHHHHHhcCCCEEEEEEECcCHH--------------HHHHHHHHHHHHHHhCC----CCCeEE
Confidence 46889999999 677888889999999999999987411 01222222222332222 358999
Q ss_pred EEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHHHHH
Q 042025 726 LILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVDEAF 805 (844)
Q Consensus 726 LfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~evF 805 (844)
|++||.|+...+ .+. .. +...|... ..+.+..+||+++.+++++|
T Consensus 117 ~v~NK~D~~~~~----~i~---------------------~~----~~~~~~~~------~~~~~~~~Sa~~~~gv~~l~ 161 (169)
T cd04114 117 LVGNKIDLAERR----EVS---------------------QQ----RAEEFSDA------QDMYYLETSAKESDNVEKLF 161 (169)
T ss_pred EEEECccccccc----ccC---------------------HH----HHHHHHHH------cCCeEEEeeCCCCCCHHHHH
Confidence 999999985421 110 11 11223222 12568899999999999999
Q ss_pred HHHHHHH
Q 042025 806 KYIREVL 812 (844)
Q Consensus 806 ~~V~e~I 812 (844)
++|.+.+
T Consensus 162 ~~i~~~~ 168 (169)
T cd04114 162 LDLACRL 168 (169)
T ss_pred HHHHHHh
Confidence 9998765
No 113
>PLN03110 Rab GTPase; Provisional
Probab=98.34 E-value=4.3e-06 Score=86.12 Aligned_cols=116 Identities=11% Similarity=0.084 Sum_probs=79.7
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcEE
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFV 725 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpiI 725 (844)
+.+++||+.|| ...+..|.+++.+++++|||+|+++- ..+......++.+... .-.+.|++
T Consensus 61 ~~l~l~Dt~G~-~~~~~~~~~~~~~~~~~ilv~d~~~~-----------------~s~~~~~~~~~~~~~~-~~~~~pii 121 (216)
T PLN03110 61 VKAQIWDTAGQ-ERYRAITSAYYRGAVGALLVYDITKR-----------------QTFDNVQRWLRELRDH-ADSNIVIM 121 (216)
T ss_pred EEEEEEECCCc-HHHHHHHHHHhCCCCEEEEEEECCCh-----------------HHHHHHHHHHHHHHHh-CCCCCeEE
Confidence 57999999999 77788999999999999999998851 1122223333333332 12468999
Q ss_pred EEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHHHHH
Q 042025 726 LILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVDEAF 805 (844)
Q Consensus 726 LfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~evF 805 (844)
|++||.|+...+ .+. .+.+..+ ... ..+.++.|||.++.+|+++|
T Consensus 122 iv~nK~Dl~~~~----~~~--------------------~~~~~~l-----~~~------~~~~~~e~SA~~g~~v~~lf 166 (216)
T PLN03110 122 MAGNKSDLNHLR----SVA--------------------EEDGQAL-----AEK------EGLSFLETSALEATNVEKAF 166 (216)
T ss_pred EEEEChhccccc----CCC--------------------HHHHHHH-----HHH------cCCEEEEEeCCCCCCHHHHH
Confidence 999999985421 010 1222211 111 23568899999999999999
Q ss_pred HHHHHHHhhh
Q 042025 806 KYIREVLKWD 815 (844)
Q Consensus 806 ~~V~e~Ik~~ 815 (844)
+++.+.|...
T Consensus 167 ~~l~~~i~~~ 176 (216)
T PLN03110 167 QTILLEIYHI 176 (216)
T ss_pred HHHHHHHHHH
Confidence 9998887654
No 114
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=98.32 E-value=5.3e-06 Score=79.53 Aligned_cols=115 Identities=14% Similarity=0.231 Sum_probs=79.4
Q ss_pred CceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcE
Q 042025 645 LTKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPF 724 (844)
Q Consensus 645 ~~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpi 724 (844)
...+++||++|+ ......+..++.+++++|+|.|+++ .+-++.....+..+-.... .+.|+
T Consensus 47 ~~~l~i~D~~g~-~~~~~~~~~~~~~~~~~ii~fd~~~-----------------~~S~~~~~~~~~~i~~~~~-~~~~i 107 (162)
T PF00071_consen 47 PVNLEIWDTSGQ-ERFDSLRDIFYRNSDAIIIVFDVTD-----------------EESFENLKKWLEEIQKYKP-EDIPI 107 (162)
T ss_dssp EEEEEEEEETTS-GGGHHHHHHHHTTESEEEEEEETTB-----------------HHHHHTHHHHHHHHHHHST-TTSEE
T ss_pred cccccccccccc-ccccccccccccccccccccccccc-----------------ccccccccccccccccccc-ccccc
Confidence 368999999999 5555566778999999999999885 2334444444554444332 56899
Q ss_pred EEEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHHHH
Q 042025 725 VLILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVDEA 804 (844)
Q Consensus 725 ILfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~ev 804 (844)
+|+.||.|+..++ .++ .+++..+. + . .+ .....++|.++.+|.++
T Consensus 108 ivvg~K~D~~~~~----~v~--------------------~~~~~~~~-----~---~--~~-~~~~e~Sa~~~~~v~~~ 152 (162)
T PF00071_consen 108 IVVGNKSDLSDER----EVS--------------------VEEAQEFA-----K---E--LG-VPYFEVSAKNGENVKEI 152 (162)
T ss_dssp EEEEETTTGGGGS----SSC--------------------HHHHHHHH-----H---H--TT-SEEEEEBTTTTTTHHHH
T ss_pred eeeeccccccccc----cch--------------------hhHHHHHH-----H---H--hC-CEEEEEECCCCCCHHHH
Confidence 9999999998621 121 23333322 1 1 12 45677899999999999
Q ss_pred HHHHHHHHh
Q 042025 805 FKYIREVLK 813 (844)
Q Consensus 805 F~~V~e~Ik 813 (844)
|..+.+.|.
T Consensus 153 f~~~i~~i~ 161 (162)
T PF00071_consen 153 FQELIRKIL 161 (162)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999888764
No 115
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=98.28 E-value=4.2e-06 Score=81.73 Aligned_cols=110 Identities=13% Similarity=0.113 Sum_probs=73.9
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcEE
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFV 725 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpiI 725 (844)
..+++||+.|+ ...+..|.++|.+++++|||+|+++..+ .+++..+..+.. .+.|++
T Consensus 67 ~~~~l~Dt~G~-~~~~~~~~~~~~~ad~~i~v~D~~~~~~------------------~~~~~~~~~~~~----~~~~ii 123 (179)
T cd01890 67 YLLNLIDTPGH-VDFSYEVSRSLAACEGALLLVDATQGVE------------------AQTLANFYLALE----NNLEII 123 (179)
T ss_pred EEEEEEECCCC-hhhHHHHHHHHHhcCeEEEEEECCCCcc------------------HhhHHHHHHHHH----cCCCEE
Confidence 57899999999 7788899999999999999999885211 011222222222 367999
Q ss_pred EEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHHHHH
Q 042025 726 LILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVDEAF 805 (844)
Q Consensus 726 LfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~evF 805 (844)
|++||+|+..+. .....+-+.+. ..+ ....++.+||.++++|++.|
T Consensus 124 iv~NK~Dl~~~~---------------------------~~~~~~~~~~~-~~~------~~~~~~~~Sa~~g~gi~~l~ 169 (179)
T cd01890 124 PVINKIDLPSAD---------------------------PERVKQQIEDV-LGL------DPSEAILVSAKTGLGVEDLL 169 (179)
T ss_pred EEEECCCCCcCC---------------------------HHHHHHHHHHH-hCC------CcccEEEeeccCCCCHHHHH
Confidence 999999985320 00111112221 111 12347899999999999999
Q ss_pred HHHHHHH
Q 042025 806 KYIREVL 812 (844)
Q Consensus 806 ~~V~e~I 812 (844)
+++.+.+
T Consensus 170 ~~l~~~~ 176 (179)
T cd01890 170 EAIVERI 176 (179)
T ss_pred HHHHhhC
Confidence 9998764
No 116
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=98.27 E-value=3.5e-06 Score=80.24 Aligned_cols=113 Identities=16% Similarity=0.144 Sum_probs=69.6
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcEE
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFV 725 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpiI 725 (844)
.++++||+.|+ ...+..+..++.++|++|||+|+++ . .+.++.+.+..+ . .....|+|
T Consensus 51 ~~~~~~DtpG~-~~~~~~~~~~~~~ad~ii~V~d~~~--~----------------~~~~~~~~~~~~-~--~~~~~~~i 108 (164)
T cd04171 51 KRLGFIDVPGH-EKFIKNMLAGAGGIDLVLLVVAADE--G----------------IMPQTREHLEIL-E--LLGIKRGL 108 (164)
T ss_pred cEEEEEECCCh-HHHHHHHHhhhhcCCEEEEEEECCC--C----------------ccHhHHHHHHHH-H--HhCCCcEE
Confidence 36899999999 5555566677889999999999874 0 011222222211 1 11224899
Q ss_pred EEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHHHHH
Q 042025 726 LILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVDEAF 805 (844)
Q Consensus 726 LfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~evF 805 (844)
|++||.|+..+. . .+...+.+.+.+... ....+.+..+||.+++++++.|
T Consensus 109 lv~NK~Dl~~~~----~----------------------~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~~v~~l~ 158 (164)
T cd04171 109 VVLTKADLVDED----W----------------------LELVEEEIRELLAGT----FLADAPIFPVSAVTGEGIEELK 158 (164)
T ss_pred EEEECccccCHH----H----------------------HHHHHHHHHHHHHhc----CcCCCcEEEEeCCCCcCHHHHH
Confidence 999999996531 0 011111222222221 0124568899999999999999
Q ss_pred HHHHH
Q 042025 806 KYIRE 810 (844)
Q Consensus 806 ~~V~e 810 (844)
+++..
T Consensus 159 ~~l~~ 163 (164)
T cd04171 159 EYLDE 163 (164)
T ss_pred HHHhh
Confidence 98753
No 117
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=98.27 E-value=1.5e-05 Score=76.68 Aligned_cols=123 Identities=14% Similarity=0.137 Sum_probs=75.3
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcEE
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFV 725 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpiI 725 (844)
.++++||++|| ......+..++..++++|||+|.++ ...+.+....|-..+... ..+.|++
T Consensus 48 ~~l~~~D~~g~-~~~~~~~~~~~~~~~~~i~v~d~~~-----------------~~s~~~~~~~~~~~~~~~-~~~~p~i 108 (171)
T cd00157 48 VNLGLWDTAGQ-EEYDRLRPLSYPNTDVFLICFSVDS-----------------PSSFENVKTKWIPEIRHY-CPNVPII 108 (171)
T ss_pred EEEEEEeCCCc-ccccccchhhcCCCCEEEEEEECCC-----------------HHHHHHHHHHHHHHHHhh-CCCCCEE
Confidence 57899999999 5445556667899999999999874 122333333333333322 2379999
Q ss_pred EEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHHHHH
Q 042025 726 LILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVDEAF 805 (844)
Q Consensus 726 LfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~evF 805 (844)
|++||.|+....- ... |. .+. ...-..+.+.++. .. .+.+.++.+||.++.++.++|
T Consensus 109 vv~nK~Dl~~~~~---~~~---~~-~~~------~~~v~~~~~~~~~-----~~-----~~~~~~~~~Sa~~~~gi~~l~ 165 (171)
T cd00157 109 LVGTKIDLRDDEN---TLK---KL-EKG------KEPITPEEGEKLA-----KE-----IGAIGYMECSALTQEGVKEVF 165 (171)
T ss_pred EEEccHHhhhchh---hhh---hc-ccC------CCccCHHHHHHHH-----HH-----hCCeEEEEeecCCCCCHHHHH
Confidence 9999999986421 111 11 000 0000022222211 11 123468889999999999999
Q ss_pred HHHHH
Q 042025 806 KYIRE 810 (844)
Q Consensus 806 ~~V~e 810 (844)
++|.+
T Consensus 166 ~~i~~ 170 (171)
T cd00157 166 EEAIR 170 (171)
T ss_pred HHHhh
Confidence 98864
No 118
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=98.26 E-value=1.5e-05 Score=76.95 Aligned_cols=112 Identities=20% Similarity=0.179 Sum_probs=72.0
Q ss_pred ceEEEEEeCCCCCCCccccee----------ccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHc
Q 042025 646 TKYQLIRVNAKGMNEGCKWVE----------MFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIR 715 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~----------~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n 715 (844)
.++++||+.|+ . .+..|.. +....+++|||+|.++... . .+.+...+++.+..
T Consensus 47 ~~~~i~Dt~G~-~-~~~~~~~~~~~~~~~~~~~~~~d~~l~v~d~~~~~~--------------~-~~~~~~~~~~~l~~ 109 (168)
T cd01897 47 LRWQVIDTPGL-L-DRPLEERNTIEMQAITALAHLRAAVLFLFDPSETCG--------------Y-SLEEQLSLFEEIKP 109 (168)
T ss_pred eEEEEEECCCc-C-CccccCCchHHHHHHHHHHhccCcEEEEEeCCcccc--------------c-chHHHHHHHHHHHh
Confidence 57999999998 3 2233321 1123589999999885211 1 23344455665543
Q ss_pred CCCCCCCcEEEEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEee
Q 042025 716 HPCFKDTPFVLILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARA 795 (844)
Q Consensus 716 ~p~f~~tpiILfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~A 795 (844)
.+.+.|+||++||.|+.... . ... ..++.. ...+.++.|||
T Consensus 110 --~~~~~pvilv~NK~Dl~~~~----~----------------------~~~-----~~~~~~------~~~~~~~~~Sa 150 (168)
T cd01897 110 --LFKNKPVIVVLNKIDLLTFE----D----------------------LSE-----IEEEEE------LEGEEVLKIST 150 (168)
T ss_pred --hcCcCCeEEEEEccccCchh----h----------------------HHH-----HHHhhh------hccCceEEEEe
Confidence 24679999999999996420 0 111 112221 13466889999
Q ss_pred cCCCCHHHHHHHHHHHHh
Q 042025 796 RDRVTVDEAFKYIREVLK 813 (844)
Q Consensus 796 tDte~I~evF~~V~e~Ik 813 (844)
.++.+|+++|+|+.+.|+
T Consensus 151 ~~~~gi~~l~~~l~~~~~ 168 (168)
T cd01897 151 LTEEGVDEVKNKACELLL 168 (168)
T ss_pred cccCCHHHHHHHHHHHhC
Confidence 999999999999998763
No 119
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=98.24 E-value=8.3e-06 Score=83.28 Aligned_cols=124 Identities=15% Similarity=0.211 Sum_probs=71.2
Q ss_pred CceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcE
Q 042025 645 LTKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPF 724 (844)
Q Consensus 645 ~~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpi 724 (844)
.+++++||+.|| .. .....+|.+++++|+|.|+++ ...++.....|...+... ..+.|+
T Consensus 65 ~v~l~iwDTaG~-~~--~~~~~~~~~ad~iilv~d~t~-----------------~~Sf~~~~~~w~~~i~~~-~~~~pi 123 (195)
T cd01873 65 SVSLRLWDTFGD-HD--KDRRFAYGRSDVVLLCFSIAS-----------------PNSLRNVKTMWYPEIRHF-CPRVPV 123 (195)
T ss_pred EEEEEEEeCCCC-hh--hhhcccCCCCCEEEEEEECCC-----------------hhHHHHHHHHHHHHHHHh-CCCCCE
Confidence 368999999888 32 223358999999999999985 222333333232222221 246899
Q ss_pred EEEecccchhhhhhh---c--cccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCC
Q 042025 725 VLILNKYDLFEEKVN---R--VHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRV 799 (844)
Q Consensus 725 ILfLNK~DLfeeKI~---~--spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte 799 (844)
||+.||.||...... . .++.. +......-. .+++.++- + . ..+..+.|||.++.
T Consensus 124 ilvgNK~DL~~~~~~~~~~~~~~~~~--------~~~~~~~V~--~~e~~~~a-----~---~---~~~~~~E~SAkt~~ 182 (195)
T cd01873 124 ILVGCKLDLRYADLDEVNRARRPLAR--------PIKNADILP--PETGRAVA-----K---E---LGIPYYETSVVTQF 182 (195)
T ss_pred EEEEEchhccccccchhhhccccccc--------ccccCCccC--HHHHHHHH-----H---H---hCCEEEEcCCCCCC
Confidence 999999998642110 0 11110 000000000 23333321 1 1 12346789999999
Q ss_pred CHHHHHHHHHH
Q 042025 800 TVDEAFKYIRE 810 (844)
Q Consensus 800 ~I~evF~~V~e 810 (844)
+|+++|+.+.+
T Consensus 183 ~V~e~F~~~~~ 193 (195)
T cd01873 183 GVKDVFDNAIR 193 (195)
T ss_pred CHHHHHHHHHH
Confidence 99999987764
No 120
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=98.23 E-value=6.1e-06 Score=79.24 Aligned_cols=116 Identities=14% Similarity=0.084 Sum_probs=75.1
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcEE
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFV 725 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpiI 725 (844)
..+.+||++|+ ...+..|.+++..++++|+|+|.++.+. .+++..+..+.. .+.|++
T Consensus 50 ~~~~iiDtpG~-~~~~~~~~~~~~~~d~il~v~d~~~~~~------------------~~~~~~~~~~~~----~~~p~i 106 (168)
T cd01887 50 PGITFIDTPGH-EAFTNMRARGASLTDIAILVVAADDGVM------------------PQTIEAIKLAKA----ANVPFI 106 (168)
T ss_pred ceEEEEeCCCc-HHHHHHHHHHHhhcCEEEEEEECCCCcc------------------HHHHHHHHHHHH----cCCCEE
Confidence 47899999999 6677788889999999999999986321 122222222222 367999
Q ss_pred EEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHHHHH
Q 042025 726 LILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVDEAF 805 (844)
Q Consensus 726 LfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~evF 805 (844)
+++||+|+..+.. +....-+. .+.........+.+.++.+||.++++|.+.|
T Consensus 107 vv~NK~Dl~~~~~---------------------------~~~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 158 (168)
T cd01887 107 VALNKIDKPNANP---------------------------ERVKNELS-ELGLQGEDEWGGDVQIVPTSAKTGEGIDDLL 158 (168)
T ss_pred EEEEceecccccH---------------------------HHHHHHHH-HhhccccccccCcCcEEEeecccCCCHHHHH
Confidence 9999999863210 00001011 1111100001345678999999999999999
Q ss_pred HHHHHHH
Q 042025 806 KYIREVL 812 (844)
Q Consensus 806 ~~V~e~I 812 (844)
+|+.+..
T Consensus 159 ~~l~~~~ 165 (168)
T cd01887 159 EAILLLA 165 (168)
T ss_pred HHHHHhh
Confidence 9998764
No 121
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=98.20 E-value=6.7e-06 Score=80.11 Aligned_cols=118 Identities=14% Similarity=0.134 Sum_probs=78.2
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcEE
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFV 725 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpiI 725 (844)
..+.+||+.|+ ...+..|.+++.+++++|||+|.++-.. .+..+.+..+.. .+.|++
T Consensus 62 ~~~~liDtpG~-~~~~~~~~~~~~~~d~~i~v~d~~~~~~------------------~~~~~~~~~~~~----~~~~i~ 118 (189)
T cd00881 62 RRVNFIDTPGH-EDFSSEVIRGLSVSDGAILVVDANEGVQ------------------PQTREHLRIARE----GGLPII 118 (189)
T ss_pred EEEEEEeCCCc-HHHHHHHHHHHHhcCEEEEEEECCCCCc------------------HHHHHHHHHHHH----CCCCeE
Confidence 47899999999 6777889999999999999999874110 111222222222 468999
Q ss_pred EEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhc-------cCCCCcEEEEEEeecCC
Q 042025 726 LILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYA-------SLTGRKLFVWQARARDR 798 (844)
Q Consensus 726 LfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~-------s~~~Rklyvh~T~AtDt 798 (844)
+++||.|+..+- . .+...+++...+..+.. ......+.++.+||.++
T Consensus 119 iv~nK~D~~~~~----~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g 172 (189)
T cd00881 119 VAINKIDRVGEE----D----------------------LEEVLREIKELLGLIGFISTKEEGTRNGLLVPIVPGSALTG 172 (189)
T ss_pred EEEECCCCcchh----c----------------------HHHHHHHHHHHHccccccchhhhhcccCCcceEEEEecccC
Confidence 999999997520 0 12223333333222110 00124567899999999
Q ss_pred CCHHHHHHHHHHHH
Q 042025 799 VTVDEAFKYIREVL 812 (844)
Q Consensus 799 e~I~evF~~V~e~I 812 (844)
.++++.|+++.+.+
T Consensus 173 ~gi~~l~~~l~~~l 186 (189)
T cd00881 173 IGVEELLEAIVEHL 186 (189)
T ss_pred cCHHHHHHHHHhhC
Confidence 99999999998775
No 122
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.18 E-value=1.3e-05 Score=82.55 Aligned_cols=123 Identities=21% Similarity=0.261 Sum_probs=85.6
Q ss_pred CCceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCc
Q 042025 644 PLTKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTP 723 (844)
Q Consensus 644 ~~~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tp 723 (844)
..+++++||+.|| ...|..-.+||.++++||||-|+++ .++ -|-+ ..|-.=+..-.-.+.|
T Consensus 56 k~iKlQIWDTAGQ-ERFrtit~syYR~ahGii~vyDiT~-------~~S-------F~~v----~~Wi~Ei~~~~~~~v~ 116 (205)
T KOG0084|consen 56 KTIKLQIWDTAGQ-ERFRTITSSYYRGAHGIIFVYDITK-------QES-------FNNV----KRWIQEIDRYASENVP 116 (205)
T ss_pred eEEEEEeeecccc-HHHhhhhHhhccCCCeEEEEEEccc-------HHH-------hhhH----HHHHHHhhhhccCCCC
Confidence 4579999999999 7888889999999999999999986 221 2222 2222222223345689
Q ss_pred EEEEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHHH
Q 042025 724 FVLILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVDE 803 (844)
Q Consensus 724 iILfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~e 803 (844)
.||+.||.|+.+.+. .. .++|.. |.+-+. -.. ...|||.+..+|..
T Consensus 117 ~lLVGNK~Dl~~~~~----v~--------------------~~~a~~-----fa~~~~----~~~-f~ETSAK~~~NVe~ 162 (205)
T KOG0084|consen 117 KLLVGNKCDLTEKRV----VS--------------------TEEAQE-----FADELG----IPI-FLETSAKDSTNVED 162 (205)
T ss_pred eEEEeeccccHhhee----cC--------------------HHHHHH-----HHHhcC----Ccc-eeecccCCccCHHH
Confidence 999999999987631 11 244433 433321 111 77899999999999
Q ss_pred HHHHHHHHHhhhhhcc
Q 042025 804 AFKYIREVLKWDDEKE 819 (844)
Q Consensus 804 vF~~V~e~Ik~~~~k~ 819 (844)
+|-.+-..|+...-..
T Consensus 163 ~F~~la~~lk~~~~~~ 178 (205)
T KOG0084|consen 163 AFLTLAKELKQRKGLH 178 (205)
T ss_pred HHHHHHHHHHHhcccC
Confidence 9999988887665544
No 123
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=98.17 E-value=7.8e-06 Score=78.83 Aligned_cols=115 Identities=18% Similarity=0.267 Sum_probs=68.5
Q ss_pred eEEEEEeCCCC---CCC---cccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCC
Q 042025 647 KYQLIRVNAKG---MNE---GCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFK 720 (844)
Q Consensus 647 ~~~liDVGGQ~---rse---R~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~ 720 (844)
++++||++|+. ... +..|...+++++++|||+|+++-+ + ....+..-++.+.... +.+.
T Consensus 49 ~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~-------~------~~~~~~~~~~~l~~~~--~~~~ 113 (170)
T cd01898 49 SFVVADIPGLIEGASEGKGLGHRFLRHIERTRLLLHVIDLSGDD-------D------PVEDYKTIRNELELYN--PELL 113 (170)
T ss_pred eEEEEecCcccCcccccCCchHHHHHHHHhCCEEEEEEecCCCC-------C------HHHHHHHHHHHHHHhC--cccc
Confidence 58899999972 111 223333445699999999998521 1 1222333333333321 2355
Q ss_pred CCcEEEEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCC
Q 042025 721 DTPFVLILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVT 800 (844)
Q Consensus 721 ~tpiILfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~ 800 (844)
+.|+++++||.|+.... .. .+. +.. +... .....++.+||+++.+
T Consensus 114 ~~p~ivv~NK~Dl~~~~----~~---------------------~~~----~~~-~~~~-----~~~~~~~~~Sa~~~~g 158 (170)
T cd01898 114 EKPRIVVLNKIDLLDEE----EL---------------------FEL----LKE-LLKE-----LWGKPVFPISALTGEG 158 (170)
T ss_pred ccccEEEEEchhcCCch----hh---------------------HHH----HHH-HHhh-----CCCCCEEEEecCCCCC
Confidence 78999999999985421 00 111 111 1111 0234578899999999
Q ss_pred HHHHHHHHHHH
Q 042025 801 VDEAFKYIREV 811 (844)
Q Consensus 801 I~evF~~V~e~ 811 (844)
+++.|+|+.+.
T Consensus 159 i~~l~~~i~~~ 169 (170)
T cd01898 159 LDELLRKLAEL 169 (170)
T ss_pred HHHHHHHHHhh
Confidence 99999998764
No 124
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=98.16 E-value=1.3e-05 Score=83.18 Aligned_cols=114 Identities=18% Similarity=0.234 Sum_probs=76.9
Q ss_pred ceEEEEEeCCCCCCCcccce--eccC-CccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCC
Q 042025 646 TKYQLIRVNAKGMNEGCKWV--EMFE-DVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDT 722 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~--~~Fe-dV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~t 722 (844)
..+.+||++|+ . .|. .++. +++++|||+|+++ ...+....+++..+.+.....+.
T Consensus 50 ~~l~i~Dt~G~-~----~~~~~~~~~~~ad~iilV~d~td-----------------~~S~~~~~~~~~~l~~~~~~~~~ 107 (221)
T cd04148 50 STLVVIDHWEQ-E----MWTEDSCMQYQGDAFVVVYSVTD-----------------RSSFERASELRIQLRRNRQLEDR 107 (221)
T ss_pred EEEEEEeCCCc-c----hHHHhHHhhcCCCEEEEEEECCC-----------------HHHHHHHHHHHHHHHHhcCCCCC
Confidence 46889999999 4 232 3555 9999999999985 22344455566666665545689
Q ss_pred cEEEEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHH
Q 042025 723 PFVLILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVD 802 (844)
Q Consensus 723 piILfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~ 802 (844)
|+||++||.|+..+. .++ .+++.++ ... ..+.++.|||.++.+|+
T Consensus 108 piilV~NK~Dl~~~~----~v~--------------------~~~~~~~-a~~----------~~~~~~e~SA~~~~gv~ 152 (221)
T cd04148 108 PIILVGNKSDLARSR----EVS--------------------VQEGRAC-AVV----------FDCKFIETSAGLQHNVD 152 (221)
T ss_pred CEEEEEEChhccccc----eec--------------------HHHHHHH-HHH----------cCCeEEEecCCCCCCHH
Confidence 999999999985431 111 1222221 111 12346789999999999
Q ss_pred HHHHHHHHHHhhhh
Q 042025 803 EAFKYIREVLKWDD 816 (844)
Q Consensus 803 evF~~V~e~Ik~~~ 816 (844)
++|+++.+.+.-..
T Consensus 153 ~l~~~l~~~~~~~~ 166 (221)
T cd04148 153 ELLEGIVRQIRLRR 166 (221)
T ss_pred HHHHHHHHHHHhhh
Confidence 99999999886433
No 125
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=98.15 E-value=9.8e-06 Score=73.37 Aligned_cols=112 Identities=16% Similarity=0.193 Sum_probs=75.7
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcEE
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFV 725 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpiI 725 (844)
..+.+||++|+ ......|..++.+++++|||+|+++. ..+.....++........-.+.|++
T Consensus 45 ~~~~l~D~~g~-~~~~~~~~~~~~~~~~~i~v~d~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~i 106 (157)
T cd00882 45 VKLQIWDTAGQ-ERFRSLRRLYYRGADGIILVYDVTDR-----------------ESFENVKEWLLLILINKEGENIPII 106 (157)
T ss_pred EEEEEEecCCh-HHHHhHHHHHhcCCCEEEEEEECcCH-----------------HHHHHHHHHHHHHHHhhccCCCcEE
Confidence 46889999999 66777888899999999999999851 2223333332333333445579999
Q ss_pred EEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHHHHH
Q 042025 726 LILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVDEAF 805 (844)
Q Consensus 726 LfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~evF 805 (844)
+++||.|+.... . .. ... .. ++... ...+.++.++|.++.++.+.|
T Consensus 107 vv~nk~D~~~~~------~----------------~~--~~~----~~-~~~~~-----~~~~~~~~~s~~~~~~i~~~~ 152 (157)
T cd00882 107 LVGNKIDLPEER------V----------------VS--EEE----LA-EQLAK-----ELGVPYFETSAKTGENVEELF 152 (157)
T ss_pred EEEecccccccc------c----------------hH--HHH----HH-HHHHh-----hcCCcEEEEecCCCCChHHHH
Confidence 999999986531 0 00 010 00 11111 235678999999999999999
Q ss_pred HHHH
Q 042025 806 KYIR 809 (844)
Q Consensus 806 ~~V~ 809 (844)
+||.
T Consensus 153 ~~l~ 156 (157)
T cd00882 153 EELA 156 (157)
T ss_pred HHHh
Confidence 9975
No 126
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=98.11 E-value=1.3e-05 Score=89.00 Aligned_cols=118 Identities=19% Similarity=0.255 Sum_probs=74.9
Q ss_pred ceEEEEEeCCCCC------CCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCC
Q 042025 646 TKYQLIRVNAKGM------NEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCF 719 (844)
Q Consensus 646 ~~~~liDVGGQ~r------seR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f 719 (844)
.+|.+||+.|... ..+..|..+++.++++|||+|+++.+. .+.+..-++.++.. .+.+
T Consensus 206 ~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~vlI~ViD~s~~~s--------------~e~~~~~~~EL~~~--~~~L 269 (335)
T PRK12299 206 KSFVIADIPGLIEGASEGAGLGHRFLKHIERTRLLLHLVDIEAVDP--------------VEDYKTIRNELEKY--SPEL 269 (335)
T ss_pred cEEEEEeCCCccCCCCccccHHHHHHHHhhhcCEEEEEEcCCCCCC--------------HHHHHHHHHHHHHh--hhhc
Confidence 4689999998721 134567778889999999999986320 11122222222221 2446
Q ss_pred CCCcEEEEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCC
Q 042025 720 KDTPFVLILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRV 799 (844)
Q Consensus 720 ~~tpiILfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte 799 (844)
.+.|+||++||+|+..+. .+. .+.... +.. . ..+.++.+||.+++
T Consensus 270 ~~kp~IIV~NKiDL~~~~----~~~--------------------~~~~~~-----~~~---~---~~~~i~~iSAktg~ 314 (335)
T PRK12299 270 ADKPRILVLNKIDLLDEE----EER--------------------EKRAAL-----ELA---A---LGGPVFLISAVTGE 314 (335)
T ss_pred ccCCeEEEEECcccCCch----hHH--------------------HHHHHH-----HHH---h---cCCCEEEEEcCCCC
Confidence 678999999999986431 000 011111 111 1 12457899999999
Q ss_pred CHHHHHHHHHHHHhh
Q 042025 800 TVDEAFKYIREVLKW 814 (844)
Q Consensus 800 ~I~evF~~V~e~Ik~ 814 (844)
+|++.|++|.+.+..
T Consensus 315 GI~eL~~~L~~~l~~ 329 (335)
T PRK12299 315 GLDELLRALWELLEE 329 (335)
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999998754
No 127
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=98.06 E-value=3.3e-06 Score=86.51 Aligned_cols=74 Identities=22% Similarity=0.354 Sum_probs=60.6
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCc-cEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCC--CCC
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDV-RVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCF--KDT 722 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV-~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f--~~t 722 (844)
..+++||++|+ ...|..|..++.++ ++||||||.+++ .+.+.++.+.+..++.+... .+.
T Consensus 48 ~~~~l~D~pG~-~~~~~~~~~~~~~~~~~vV~VvD~~~~----------------~~~~~~~~~~l~~il~~~~~~~~~~ 110 (203)
T cd04105 48 KKFRLVDVPGH-PKLRDKLLETLKNSAKGIVFVVDSATF----------------QKNLKDVAEFLYDILTDLEKVKNKI 110 (203)
T ss_pred ceEEEEECCCC-HHHHHHHHHHHhccCCEEEEEEECccc----------------hhHHHHHHHHHHHHHHHHhhccCCC
Confidence 46899999999 67889999999998 999999999862 25567777777777765433 479
Q ss_pred cEEEEecccchhhh
Q 042025 723 PFVLILNKYDLFEE 736 (844)
Q Consensus 723 piILfLNK~DLfee 736 (844)
|+||++||+|++.+
T Consensus 111 pvliv~NK~Dl~~a 124 (203)
T cd04105 111 PVLIACNKQDLFTA 124 (203)
T ss_pred CEEEEecchhhccc
Confidence 99999999999864
No 128
>PRK04213 GTP-binding protein; Provisional
Probab=98.03 E-value=1.8e-05 Score=79.43 Aligned_cols=123 Identities=18% Similarity=0.238 Sum_probs=72.6
Q ss_pred eEEEEEeCCCC----------CCCcccceeccC----CccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHH
Q 042025 647 KYQLIRVNAKG----------MNEGCKWVEMFE----DVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEM 712 (844)
Q Consensus 647 ~~~liDVGGQ~----------rseR~KW~~~Fe----dV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFes 712 (844)
.+++||++|.+ ...|..|.+|+. .+++|+||+|.+++.+.. +.- ...+.+....+++..
T Consensus 53 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~---~~~----~~~~~~~~~~~l~~~ 125 (201)
T PRK04213 53 DFILTDLPGFGFMSGVPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEII---ERW----EGRGEIPIDVEMFDF 125 (201)
T ss_pred ceEEEeCCccccccccCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccc---ccc----ccCCCcHHHHHHHHH
Confidence 37799999831 344556666654 467899999988764432 000 001223333444444
Q ss_pred HHcCCCCCCCcEEEEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcE--EE
Q 042025 713 MIRHPCFKDTPFVLILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKL--FV 790 (844)
Q Consensus 713 I~n~p~f~~tpiILfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rkl--yv 790 (844)
+.. .+.|+||++||+|+..++ . +.+ +-+.+.+ .+.. ..+.+ .+
T Consensus 126 ~~~----~~~p~iiv~NK~Dl~~~~------~---------------------~~~-~~~~~~~-~~~~--~~~~~~~~~ 170 (201)
T PRK04213 126 LRE----LGIPPIVAVNKMDKIKNR------D---------------------EVL-DEIAERL-GLYP--PWRQWQDII 170 (201)
T ss_pred HHH----cCCCeEEEEECccccCcH------H---------------------HHH-HHHHHHh-cCCc--cccccCCcE
Confidence 332 368999999999986431 0 011 1122221 2210 11233 37
Q ss_pred EEEeecCCCCHHHHHHHHHHHH
Q 042025 791 WQARARDRVTVDEAFKYIREVL 812 (844)
Q Consensus 791 h~T~AtDte~I~evF~~V~e~I 812 (844)
+.|||.++ ||+++|+||.+.+
T Consensus 171 ~~~SA~~g-gi~~l~~~l~~~~ 191 (201)
T PRK04213 171 APISAKKG-GIEELKEAIRKRL 191 (201)
T ss_pred EEEecccC-CHHHHHHHHHHhh
Confidence 89999999 9999999999875
No 129
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=98.02 E-value=7.1e-06 Score=84.82 Aligned_cols=118 Identities=11% Similarity=0.034 Sum_probs=70.2
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcEE
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFV 725 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpiI 725 (844)
.++.+||++|+ +.....|......++++|||||.++=+. +. ......+.+..+... . .+...|+|
T Consensus 77 ~~i~liDtpG~-~~~~~~~~~~~~~~d~~i~VvDa~~~~~-----~~------~~~~~~~~~~~~~~~-~--~~~~~~ii 141 (219)
T cd01883 77 YRFTILDAPGH-RDFVPNMITGASQADVAVLVVDARKGEF-----EA------GFEKGGQTREHALLA-R--TLGVKQLI 141 (219)
T ss_pred eEEEEEECCCh-HHHHHHHHHHhhhCCEEEEEEECCCCcc-----cc------ccccccchHHHHHHH-H--HcCCCeEE
Confidence 57999999999 6666777777888999999999986110 00 001111222222221 1 23346899
Q ss_pred EEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHH
Q 042025 726 LILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVD 802 (844)
Q Consensus 726 LfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~ 802 (844)
+++||+|+.... +. +...+...+.+...+..+. ...+.+.++.+||.+++||+
T Consensus 142 ivvNK~Dl~~~~--------------~~--------~~~~~~i~~~l~~~l~~~~--~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 142 VAVNKMDDVTVN--------------WS--------EERYDEIKKELSPFLKKVG--YNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred EEEEcccccccc--------------cc--------HHHHHHHHHHHHHHHHHcC--CCcCCceEEEeecCcCCCCC
Confidence 999999997320 00 0002222333333333321 23467899999999999986
No 130
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=98.00 E-value=2.1e-05 Score=80.36 Aligned_cols=116 Identities=14% Similarity=0.137 Sum_probs=73.7
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcEE
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFV 725 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpiI 725 (844)
..+.+||+.|+ ....+.|.....++|++|+|||.++= .. . .++...+..+.. ....|+|
T Consensus 83 ~~i~~iDtPG~-~~~~~~~~~~~~~~D~~llVvd~~~~--------~~------~---~~t~~~l~~~~~---~~~~~ii 141 (203)
T cd01888 83 RHVSFVDCPGH-EILMATMLSGAAVMDGALLLIAANEP--------CP------Q---PQTSEHLAALEI---MGLKHII 141 (203)
T ss_pred cEEEEEECCCh-HHHHHHHHHhhhcCCEEEEEEECCCC--------CC------C---cchHHHHHHHHH---cCCCcEE
Confidence 47899999999 66677777788889999999998840 00 0 011222222211 1225799
Q ss_pred EEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHHHHH
Q 042025 726 LILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVDEAF 805 (844)
Q Consensus 726 LfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~evF 805 (844)
|++||.|+..+. . .....+.+.+.+.... ...+.+..+||.++++|++.|
T Consensus 142 ivvNK~Dl~~~~----~----------------------~~~~~~~i~~~~~~~~----~~~~~i~~vSA~~g~gi~~L~ 191 (203)
T cd01888 142 IVQNKIDLVKEE----Q----------------------ALENYEQIKKFVKGTI----AENAPIIPISAQLKYNIDVLL 191 (203)
T ss_pred EEEEchhccCHH----H----------------------HHHHHHHHHHHHhccc----cCCCcEEEEeCCCCCCHHHHH
Confidence 999999986420 0 1122233333322211 124558889999999999999
Q ss_pred HHHHHHH
Q 042025 806 KYIREVL 812 (844)
Q Consensus 806 ~~V~e~I 812 (844)
+++.+.+
T Consensus 192 ~~l~~~l 198 (203)
T cd01888 192 EYIVKKI 198 (203)
T ss_pred HHHHHhC
Confidence 9998754
No 131
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=97.98 E-value=3.1e-05 Score=77.82 Aligned_cols=67 Identities=16% Similarity=0.170 Sum_probs=50.0
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcEE
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFV 725 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpiI 725 (844)
.++++||+.|+ ...+..|..++.+++++|+|+|.++- . . .....++..+.. .+.|++
T Consensus 65 ~~~~l~DtpG~-~~~~~~~~~~~~~~d~~ilV~d~~~~--~-------------~---~~~~~~~~~~~~----~~~p~i 121 (194)
T cd01891 65 TKINIVDTPGH-ADFGGEVERVLSMVDGVLLLVDASEG--P-------------M---PQTRFVLKKALE----LGLKPI 121 (194)
T ss_pred EEEEEEECCCc-HHHHHHHHHHHHhcCEEEEEEECCCC--c-------------c---HHHHHHHHHHHH----cCCCEE
Confidence 57899999999 67778899999999999999998751 0 0 112223343333 267999
Q ss_pred EEecccchhh
Q 042025 726 LILNKYDLFE 735 (844)
Q Consensus 726 LfLNK~DLfe 735 (844)
|++||+|+..
T Consensus 122 iv~NK~Dl~~ 131 (194)
T cd01891 122 VVINKIDRPD 131 (194)
T ss_pred EEEECCCCCC
Confidence 9999999864
No 132
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=97.97 E-value=2.4e-05 Score=86.51 Aligned_cols=118 Identities=18% Similarity=0.243 Sum_probs=73.9
Q ss_pred ceEEEEEeCCCCC------CCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCC
Q 042025 646 TKYQLIRVNAKGM------NEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCF 719 (844)
Q Consensus 646 ~~~~liDVGGQ~r------seR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f 719 (844)
..|++||+.|+.. ..+..|..+++.++++|||+|+++.+.. + ....+..-++.++.. .+.+
T Consensus 205 ~~~~i~D~PGli~~a~~~~gLg~~flrhierad~ll~VvD~s~~~~~-----~------~~e~l~~l~~EL~~~--~~~l 271 (329)
T TIGR02729 205 RSFVIADIPGLIEGASEGAGLGHRFLKHIERTRVLLHLIDISPLDGR-----D------PIEDYEIIRNELKKY--SPEL 271 (329)
T ss_pred eEEEEEeCCCcccCCcccccHHHHHHHHHHhhCEEEEEEcCcccccc-----C------HHHHHHHHHHHHHHh--hhhh
Confidence 4688999998721 2334666777889999999999863210 1 122222222222222 2446
Q ss_pred CCCcEEEEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCC
Q 042025 720 KDTPFVLILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRV 799 (844)
Q Consensus 720 ~~tpiILfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte 799 (844)
.+.|+||++||+|+..+.. .+...+.+.++ . .+.+..+||.+++
T Consensus 272 ~~kp~IIV~NK~DL~~~~~--------------------------~~~~~~~l~~~-------~---~~~vi~iSAktg~ 315 (329)
T TIGR02729 272 AEKPRIVVLNKIDLLDEEE--------------------------LAELLKELKKA-------L---GKPVFPISALTGE 315 (329)
T ss_pred ccCCEEEEEeCccCCChHH--------------------------HHHHHHHHHHH-------c---CCcEEEEEccCCc
Confidence 6789999999999864310 11112222211 1 1457889999999
Q ss_pred CHHHHHHHHHHHH
Q 042025 800 TVDEAFKYIREVL 812 (844)
Q Consensus 800 ~I~evF~~V~e~I 812 (844)
+|++.|++|.+.|
T Consensus 316 GI~eL~~~I~~~l 328 (329)
T TIGR02729 316 GLDELLYALAELL 328 (329)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999998765
No 133
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=97.97 E-value=4.9e-05 Score=77.67 Aligned_cols=113 Identities=12% Similarity=0.202 Sum_probs=78.7
Q ss_pred CceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcE
Q 042025 645 LTKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPF 724 (844)
Q Consensus 645 ~~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpi 724 (844)
.+.+++||++|+ ...+..|..++.+++++|+|+|+++ ...+......+..+... ..+.|+
T Consensus 57 ~i~i~~~Dt~g~-~~~~~~~~~~~~~~~~~i~v~d~~~-----------------~~s~~~~~~~~~~i~~~--~~~~~i 116 (215)
T PTZ00132 57 PICFNVWDTAGQ-EKFGGLRDGYYIKGQCAIIMFDVTS-----------------RITYKNVPNWHRDIVRV--CENIPI 116 (215)
T ss_pred EEEEEEEECCCc-hhhhhhhHHHhccCCEEEEEEECcC-----------------HHHHHHHHHHHHHHHHh--CCCCCE
Confidence 368999999999 6777889999999999999999985 22333444444444432 357899
Q ss_pred EEEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHHHH
Q 042025 725 VLILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVDEA 804 (844)
Q Consensus 725 ILfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~ev 804 (844)
+|++||.|+.... .. .+ ... |... +.+.++.+||.++.++++.
T Consensus 117 ~lv~nK~Dl~~~~-----~~--------------------~~-~~~-----~~~~------~~~~~~e~Sa~~~~~v~~~ 159 (215)
T PTZ00132 117 VLVGNKVDVKDRQ-----VK--------------------AR-QIT-----FHRK------KNLQYYDISAKSNYNFEKP 159 (215)
T ss_pred EEEEECccCcccc-----CC--------------------HH-HHH-----HHHH------cCCEEEEEeCCCCCCHHHH
Confidence 9999999974321 00 11 111 1111 2345678999999999999
Q ss_pred HHHHHHHHhh
Q 042025 805 FKYIREVLKW 814 (844)
Q Consensus 805 F~~V~e~Ik~ 814 (844)
|.|+...+..
T Consensus 160 f~~ia~~l~~ 169 (215)
T PTZ00132 160 FLWLARRLTN 169 (215)
T ss_pred HHHHHHHHhh
Confidence 9999887754
No 134
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=97.97 E-value=5.3e-05 Score=76.09 Aligned_cols=116 Identities=10% Similarity=0.059 Sum_probs=70.0
Q ss_pred CceEEEEEeCCCCCCCcccceecc---CCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCC
Q 042025 645 LTKYQLIRVNAKGMNEGCKWVEMF---EDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKD 721 (844)
Q Consensus 645 ~~~~~liDVGGQ~rseR~KW~~~F---edV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~ 721 (844)
...+.+||+.|+ .. .|.+++ ..++++|||+|.++..+. ...+.+. +... .+
T Consensus 67 ~~~~~i~DtpG~-~~---~~~~~~~~~~~~d~vi~VvD~~~~~~~---------------~~~~~~~-~~~~------~~ 120 (192)
T cd01889 67 NLQITLVDCPGH-AS---LIRTIIGGAQIIDLMLLVVDATKGIQT---------------QTAECLV-IGEI------LC 120 (192)
T ss_pred CceEEEEECCCc-HH---HHHHHHHHHhhCCEEEEEEECCCCccH---------------HHHHHHH-HHHH------cC
Confidence 357999999999 33 344444 457899999998752110 0011111 1111 25
Q ss_pred CcEEEEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCH
Q 042025 722 TPFVLILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTV 801 (844)
Q Consensus 722 tpiILfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I 801 (844)
.|+++++||+|+..+.- .. ...+++.+++...|.... ...+-++.+||.+++|+
T Consensus 121 ~~~iiv~NK~Dl~~~~~----~~------------------~~~~~~~~~l~~~~~~~~----~~~~~vi~iSa~~g~gi 174 (192)
T cd01889 121 KKLIVVLNKIDLIPEEE----RE------------------RKIEKMKKKLQKTLEKTR----FKNSPIIPVSAKPGGGE 174 (192)
T ss_pred CCEEEEEECcccCCHHH----HH------------------HHHHHHHHHHHHHHHhcC----cCCCCEEEEeccCCCCH
Confidence 79999999999864210 00 002233333333332211 23456899999999999
Q ss_pred HHHHHHHHHHH
Q 042025 802 DEAFKYIREVL 812 (844)
Q Consensus 802 ~evF~~V~e~I 812 (844)
++.++++.+.|
T Consensus 175 ~~L~~~l~~~~ 185 (192)
T cd01889 175 AELGKDLNNLI 185 (192)
T ss_pred HHHHHHHHhcc
Confidence 99999998876
No 135
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.95 E-value=6.8e-05 Score=77.97 Aligned_cols=121 Identities=14% Similarity=0.153 Sum_probs=85.8
Q ss_pred CceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcE
Q 042025 645 LTKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPF 724 (844)
Q Consensus 645 ~~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpi 724 (844)
.+++|+||.+|| ...|..-..||.++..|+-|+|+++. .-.+.... |-..+....=.++++
T Consensus 60 ~i~lQiWDtaGQ-erf~ti~~sYyrgA~gi~LvyDitne-----------------~Sfeni~~-W~~~I~e~a~~~v~~ 120 (207)
T KOG0078|consen 60 KIKLQIWDTAGQ-ERFRTITTAYYRGAMGILLVYDITNE-----------------KSFENIRN-WIKNIDEHASDDVVK 120 (207)
T ss_pred EEEEEEEEcccc-hhHHHHHHHHHhhcCeeEEEEEccch-----------------HHHHHHHH-HHHHHHhhCCCCCcE
Confidence 579999999999 67778888899999999999999851 11122223 444444333347999
Q ss_pred EEEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHHHH
Q 042025 725 VLILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVDEA 804 (844)
Q Consensus 725 ILfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~ev 804 (844)
||+.||.|+..++ .++ .+++.+ ++.. --+..+.|||.++.||.++
T Consensus 121 ~LvGNK~D~~~~R--~V~----------------------~e~ge~-lA~e----------~G~~F~EtSAk~~~NI~ea 165 (207)
T KOG0078|consen 121 ILVGNKCDLEEKR--QVS----------------------KERGEA-LARE----------YGIKFFETSAKTNFNIEEA 165 (207)
T ss_pred EEeeccccccccc--ccc----------------------HHHHHH-HHHH----------hCCeEEEccccCCCCHHHH
Confidence 9999999998732 121 122222 1111 1366899999999999999
Q ss_pred HHHHHHHHhhhhhcc
Q 042025 805 FKYIREVLKWDDEKE 819 (844)
Q Consensus 805 F~~V~e~Ik~~~~k~ 819 (844)
|-.+...|+.+..++
T Consensus 166 F~~La~~i~~k~~~~ 180 (207)
T KOG0078|consen 166 FLSLARDILQKLEDA 180 (207)
T ss_pred HHHHHHHHHhhcchh
Confidence 999998888666554
No 136
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=97.95 E-value=5.8e-05 Score=87.79 Aligned_cols=124 Identities=15% Similarity=0.182 Sum_probs=77.2
Q ss_pred ceEEEEEeCCCCC--C----CcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcC---
Q 042025 646 TKYQLIRVNAKGM--N----EGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRH--- 716 (844)
Q Consensus 646 ~~~~liDVGGQ~r--s----eR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~--- 716 (844)
.+|+|||+.|... + ....++.+++.+++||||||+++.+.- .+ ....+......+......
T Consensus 206 ~~f~laDtPGliegas~g~gLg~~fLrhieradvLv~VVD~s~~e~~----rd------p~~d~~~i~~EL~~y~~~l~~ 275 (500)
T PRK12296 206 TRFTVADVPGLIPGASEGKGLGLDFLRHIERCAVLVHVVDCATLEPG----RD------PLSDIDALEAELAAYAPALDG 275 (500)
T ss_pred eEEEEEECCCCccccchhhHHHHHHHHHHHhcCEEEEEECCcccccc----cC------chhhHHHHHHHHHHhhhcccc
Confidence 4699999999510 1 112345567889999999999863210 01 122333333344433321
Q ss_pred ----CCCCCCcEEEEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEE
Q 042025 717 ----PCFKDTPFVLILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQ 792 (844)
Q Consensus 717 ----p~f~~tpiILfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~ 792 (844)
..+.+.|+||++||+|+...+ ...+.+...+. .+.+.++.
T Consensus 276 ~~~~~~l~~kP~IVVlNKiDL~da~-----------------------------el~e~l~~~l~-------~~g~~Vf~ 319 (500)
T PRK12296 276 DLGLGDLAERPRLVVLNKIDVPDAR-----------------------------ELAEFVRPELE-------ARGWPVFE 319 (500)
T ss_pred cchhhhhcCCCEEEEEECccchhhH-----------------------------HHHHHHHHHHH-------HcCCeEEE
Confidence 135678999999999986531 01111222221 12467899
Q ss_pred EeecCCCCHHHHHHHHHHHHhhh
Q 042025 793 ARARDRVTVDEAFKYIREVLKWD 815 (844)
Q Consensus 793 T~AtDte~I~evF~~V~e~Ik~~ 815 (844)
+||.++++|++.+.+|.+.+...
T Consensus 320 ISA~tgeGLdEL~~~L~ell~~~ 342 (500)
T PRK12296 320 VSAASREGLRELSFALAELVEEA 342 (500)
T ss_pred EECCCCCCHHHHHHHHHHHHHhh
Confidence 99999999999999999988553
No 137
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.94 E-value=7.4e-05 Score=77.18 Aligned_cols=121 Identities=19% Similarity=0.182 Sum_probs=92.4
Q ss_pred CCceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCc
Q 042025 644 PLTKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTP 723 (844)
Q Consensus 644 ~~~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tp 723 (844)
..+++|+||..|| ...|+.-..|+.|..++|-|-|+++ .|-++...+.++.+.+..-=.++-
T Consensus 69 ~~vrLQlWDTAGQ-ERFrslipsY~Rds~vaviVyDit~-----------------~~Sfe~t~kWi~dv~~e~gs~~vi 130 (221)
T KOG0094|consen 69 RTVRLQLWDTAGQ-ERFRSLIPSYIRDSSVAVIVYDITD-----------------RNSFENTSKWIEDVRRERGSDDVI 130 (221)
T ss_pred cEEEEEEEecccH-HHHhhhhhhhccCCeEEEEEEeccc-----------------cchHHHHHHHHHHHHhccCCCceE
Confidence 3589999999999 8899999999999999999999885 788899999999999987766677
Q ss_pred EEEEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHHH
Q 042025 724 FVLILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVDE 803 (844)
Q Consensus 724 iILfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~e 803 (844)
|+|+.||.||..++ + .+. ++. + .|=+. .......|||..+.||+.
T Consensus 131 I~LVGnKtDL~dkr--q--vs~--------------------eEg-~---~kAke-------l~a~f~etsak~g~NVk~ 175 (221)
T KOG0094|consen 131 IFLVGNKTDLSDKR--Q--VSI--------------------EEG-E---RKAKE-------LNAEFIETSAKAGENVKQ 175 (221)
T ss_pred EEEEcccccccchh--h--hhH--------------------HHH-H---HHHHH-------hCcEEEEecccCCCCHHH
Confidence 78888999998751 1 110 111 0 01111 234577899999999999
Q ss_pred HHHHHHHHHhhhhh
Q 042025 804 AFKYIREVLKWDDE 817 (844)
Q Consensus 804 vF~~V~e~Ik~~~~ 817 (844)
.|+-|-..+...+.
T Consensus 176 lFrrIaa~l~~~~~ 189 (221)
T KOG0094|consen 176 LFRRIAAALPGMEV 189 (221)
T ss_pred HHHHHHHhccCccc
Confidence 99988777655443
No 138
>PRK09866 hypothetical protein; Provisional
Probab=97.94 E-value=9.6e-05 Score=87.64 Aligned_cols=116 Identities=10% Similarity=0.107 Sum_probs=68.6
Q ss_pred ceEEEEEeCCCCCCCccc-----ceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCC
Q 042025 646 TKYQLIRVNAKGMNEGCK-----WVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFK 720 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~K-----W~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~ 720 (844)
..+.++|.+|- ..-..+ -.....++|+||||||... .. .+ .+ ..+++.+-.. =+
T Consensus 230 ~QIIFVDTPGI-hk~~~~~L~k~M~eqL~eADvVLFVVDat~---~~--s~--------~D-----eeIlk~Lkk~--~K 288 (741)
T PRK09866 230 GQLTLLDTPGP-NEAGQPHLQKMLNQQLARASAVLAVLDYTQ---LK--SI--------SD-----EEVREAILAV--GQ 288 (741)
T ss_pred CCEEEEECCCC-CCccchHHHHHHHHHHhhCCEEEEEEeCCC---CC--Ch--------hH-----HHHHHHHHhc--CC
Confidence 56899999997 332211 2335779999999999653 11 00 11 1222333221 11
Q ss_pred CCcEEEEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCC
Q 042025 721 DTPFVLILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVT 800 (844)
Q Consensus 721 ~tpiILfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~ 800 (844)
+.|+++++||+|+..+ . .. ..+.+..||...+.... ...--++.+||+.+.+
T Consensus 289 ~~PVILVVNKIDl~dr----e------------------ed--dkE~Lle~V~~~L~q~~----i~f~eIfPVSAlkG~n 340 (741)
T PRK09866 289 SVPLYVLVNKFDQQDR----N------------------SD--DADQVRALISGTLMKGC----ITPQQIFPVSSMWGYL 340 (741)
T ss_pred CCCEEEEEEcccCCCc----c------------------cc--hHHHHHHHHHHHHHhcC----CCCceEEEEeCCCCCC
Confidence 3699999999997421 0 00 13445566654322211 1122388899999999
Q ss_pred HHHHHHHHHH
Q 042025 801 VDEAFKYIRE 810 (844)
Q Consensus 801 I~evF~~V~e 810 (844)
++..++.|..
T Consensus 341 id~LLdeI~~ 350 (741)
T PRK09866 341 ANRARHELAN 350 (741)
T ss_pred HHHHHHHHHh
Confidence 9999988876
No 139
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=97.93 E-value=0.00013 Score=72.97 Aligned_cols=131 Identities=14% Similarity=0.100 Sum_probs=76.6
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcEE
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFV 725 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpiI 725 (844)
..+.+||+.|+ ...+..+..++.+++++|+|.++++. ..+.+....|...+.. ...++|+|
T Consensus 49 ~~l~i~Dt~g~-~~~~~~~~~~~~~a~~~llv~~i~~~-----------------~s~~~~~~~~~~~i~~-~~~~~pii 109 (187)
T cd04129 49 VQLALWDTAGQ-EEYERLRPLSYSKAHVILIGFAVDTP-----------------DSLENVRTKWIEEVRR-YCPNVPVI 109 (187)
T ss_pred EEEEEEECCCC-hhccccchhhcCCCCEEEEEEECCCH-----------------HHHHHHHHHHHHHHHH-hCCCCCEE
Confidence 35789999998 55555555577899999999888641 2233333223333322 23469999
Q ss_pred EEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHHHHH
Q 042025 726 LILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVDEAF 805 (844)
Q Consensus 726 LfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~evF 805 (844)
|+.||.|+..+... .. + +... .-.+ .+.+.. +.+.+ ....++.|||+++.+|+++|
T Consensus 110 lvgnK~Dl~~~~~~---~~---~---~~~~---~~~~--~~~~~~-~~~~~---------~~~~~~e~Sa~~~~~v~~~f 165 (187)
T cd04129 110 LVGLKKDLRQDAVA---KE---E---YRTQ---RFVP--IQQGKR-VAKEI---------GAKKYMECSALTGEGVDDVF 165 (187)
T ss_pred EEeeChhhhhCccc---cc---c---cccC---CcCC--HHHHHH-HHHHh---------CCcEEEEccCCCCCCHHHHH
Confidence 99999998543211 10 0 0000 0000 122221 21111 12346789999999999999
Q ss_pred HHHHHHHhhhhhcc
Q 042025 806 KYIREVLKWDDEKE 819 (844)
Q Consensus 806 ~~V~e~Ik~~~~k~ 819 (844)
+++.+.+.....+.
T Consensus 166 ~~l~~~~~~~~~~~ 179 (187)
T cd04129 166 EAATRAALLVRKSE 179 (187)
T ss_pred HHHHHHHhcccCcc
Confidence 99997765544444
No 140
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=97.91 E-value=0.00016 Score=72.59 Aligned_cols=116 Identities=20% Similarity=0.262 Sum_probs=78.7
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcEE
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFV 725 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpiI 725 (844)
..+.++|..|+ ....+........+|++|+|||..+- -.....+.++.+.. .+.|+|
T Consensus 70 ~~i~~iDtPG~-~~f~~~~~~~~~~~D~ailvVda~~g------------------~~~~~~~~l~~~~~----~~~p~i 126 (188)
T PF00009_consen 70 RKITLIDTPGH-EDFIKEMIRGLRQADIAILVVDANDG------------------IQPQTEEHLKILRE----LGIPII 126 (188)
T ss_dssp EEEEEEEESSS-HHHHHHHHHHHTTSSEEEEEEETTTB------------------STHHHHHHHHHHHH----TT-SEE
T ss_pred cceeecccccc-cceeecccceecccccceeeeecccc------------------cccccccccccccc----cccceE
Confidence 57999999999 55555666677889999999998741 11234455555443 357899
Q ss_pred EEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCC-CcEEEEEEeecCCCCHHHH
Q 042025 726 LILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTG-RKLFVWQARARDRVTVDEA 804 (844)
Q Consensus 726 LfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~-Rklyvh~T~AtDte~I~ev 804 (844)
+++||+|+..+.+. +..+-+..+|..-... .+ ..+-+.++||..+.|+...
T Consensus 127 vvlNK~D~~~~~~~---------------------------~~~~~~~~~l~~~~~~-~~~~~~~vi~~Sa~~g~gi~~L 178 (188)
T PF00009_consen 127 VVLNKMDLIEKELE---------------------------EIIEEIKEKLLKEYGE-NGEEIVPVIPISALTGDGIDEL 178 (188)
T ss_dssp EEEETCTSSHHHHH---------------------------HHHHHHHHHHHHHTTS-TTTSTEEEEEEBTTTTBTHHHH
T ss_pred EeeeeccchhhhHH---------------------------HHHHHHHHHhcccccc-CccccceEEEEecCCCCCHHHH
Confidence 99999999854322 2222233334332211 22 4688999999999999999
Q ss_pred HHHHHHHH
Q 042025 805 FKYIREVL 812 (844)
Q Consensus 805 F~~V~e~I 812 (844)
++.|.+.+
T Consensus 179 l~~l~~~~ 186 (188)
T PF00009_consen 179 LEALVELL 186 (188)
T ss_dssp HHHHHHHS
T ss_pred HHHHHHhC
Confidence 99888764
No 141
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=97.89 E-value=4.6e-05 Score=73.55 Aligned_cols=120 Identities=17% Similarity=0.170 Sum_probs=71.6
Q ss_pred ceEEEEEeCCCCC---CCccc---ceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCC-
Q 042025 646 TKYQLIRVNAKGM---NEGCK---WVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPC- 718 (844)
Q Consensus 646 ~~~~liDVGGQ~r---seR~K---W~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~- 718 (844)
.++.+||+.|+.. ..+.. |..++.++++|+||+|.++.+.. + ..+.+.+...+...+.....
T Consensus 44 ~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~-------~----~~~~~~~~~~~~~~~~~~~~~ 112 (176)
T cd01881 44 ARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAILHVVDASEDDDI-------G----GVDPLEDYEILNAELKLYDLE 112 (176)
T ss_pred CeEEEEeccccchhhhcCCCccHHHHHHHhccCEEEEEEeccCCccc-------c----ccCHHHHHHHHHHHHHHhhhh
Confidence 4688999999621 12223 34456789999999999862200 0 01333333334444443322
Q ss_pred -----CCCCcEEEEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEE
Q 042025 719 -----FKDTPFVLILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQA 793 (844)
Q Consensus 719 -----f~~tpiILfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T 793 (844)
+.+.|+++++||.|+.... .+ . ..+.. ... ......++.+
T Consensus 113 ~~~~~~~~~p~ivv~NK~Dl~~~~----~~----------------------~---~~~~~---~~~---~~~~~~~~~~ 157 (176)
T cd01881 113 TILGLLTAKPVIYVLNKIDLDDAE----EL----------------------E---EELVR---ELA---LEEGAEVVPI 157 (176)
T ss_pred hHHHHHhhCCeEEEEEchhcCchh----HH----------------------H---HHHHH---HHh---cCCCCCEEEE
Confidence 3578999999999986431 00 0 01111 111 1123458899
Q ss_pred eecCCCCHHHHHHHHHHH
Q 042025 794 RARDRVTVDEAFKYIREV 811 (844)
Q Consensus 794 ~AtDte~I~evF~~V~e~ 811 (844)
||.++.++++.++++...
T Consensus 158 Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 158 SAKTEEGLDELIRAIYEL 175 (176)
T ss_pred ehhhhcCHHHHHHHHHhh
Confidence 999999999999988764
No 142
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=97.87 E-value=3.7e-05 Score=79.39 Aligned_cols=75 Identities=15% Similarity=0.172 Sum_probs=55.1
Q ss_pred CceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCC-------
Q 042025 645 LTKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHP------- 717 (844)
Q Consensus 645 ~~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p------- 717 (844)
.+.+++||++|| ...+..|..+|.+++++|+|.|+++- .-++.....++.+.+..
T Consensus 53 ~~~l~IwDtaG~-e~~~~l~~~~yr~ad~iIlVyDvtn~-----------------~Sf~~l~~W~~ei~~~~~~~~~~~ 114 (202)
T cd04102 53 TFFVELWDVGGS-ESVKSTRAVFYNQVNGIILVHDLTNR-----------------KSSQNLQRWSLEALNKDTFPTGLL 114 (202)
T ss_pred EEEEEEEecCCc-hhHHHHHHHHhCcCCEEEEEEECcCh-----------------HHHHHHHHHHHHHHHhhccccccc
Confidence 468999999999 77788889999999999999999962 22222233444444321
Q ss_pred ---------CC--CCCcEEEEecccchhhhh
Q 042025 718 ---------CF--KDTPFVLILNKYDLFEEK 737 (844)
Q Consensus 718 ---------~f--~~tpiILfLNK~DLfeeK 737 (844)
.+ .+.|+||+.||.|+..++
T Consensus 115 ~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r 145 (202)
T cd04102 115 VTNGDYDSEQFGGNQIPLLVIGTKLDQIPEK 145 (202)
T ss_pred cccccccccccCCCCceEEEEEECccchhhc
Confidence 12 368999999999997763
No 143
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.85 E-value=0.0003 Score=72.47 Aligned_cols=121 Identities=19% Similarity=0.298 Sum_probs=87.7
Q ss_pred CceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcE
Q 042025 645 LTKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPF 724 (844)
Q Consensus 645 ~~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpi 724 (844)
.++|.+||++|| ...+..=.-||.+++|.|-|-|+++ ..-+..++.-++.+=.+-- .+.-|
T Consensus 53 ~ikfeIWDTAGQ-ERy~slapMYyRgA~AAivvYDit~-----------------~~SF~~aK~WvkeL~~~~~-~~~vi 113 (200)
T KOG0092|consen 53 TIKFEIWDTAGQ-ERYHSLAPMYYRGANAAIVVYDITD-----------------EESFEKAKNWVKELQRQAS-PNIVI 113 (200)
T ss_pred EEEEEEEEcCCc-ccccccccceecCCcEEEEEEeccc-----------------HHHHHHHHHHHHHHHhhCC-CCeEE
Confidence 589999999999 5555555568999999999999885 2345566666776666544 56778
Q ss_pred EEEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHHHH
Q 042025 725 VLILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVDEA 804 (844)
Q Consensus 725 ILfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~ev 804 (844)
.|+.||.||.+.+ .++ .++|..|-.. ..+-.+-|||.++.||.++
T Consensus 114 alvGNK~DL~~~R--~V~----------------------~~ea~~yAe~-----------~gll~~ETSAKTg~Nv~~i 158 (200)
T KOG0092|consen 114 ALVGNKADLLERR--EVE----------------------FEEAQAYAES-----------QGLLFFETSAKTGENVNEI 158 (200)
T ss_pred EEecchhhhhhcc--ccc----------------------HHHHHHHHHh-----------cCCEEEEEecccccCHHHH
Confidence 8899999998831 121 3444443221 2355778999999999999
Q ss_pred HHHHHHHHhhhhhcc
Q 042025 805 FKYIREVLKWDDEKE 819 (844)
Q Consensus 805 F~~V~e~Ik~~~~k~ 819 (844)
|..|-+.|-....+.
T Consensus 159 f~~Ia~~lp~~~~~~ 173 (200)
T KOG0092|consen 159 FQAIAEKLPCSDPQE 173 (200)
T ss_pred HHHHHHhccCccccc
Confidence 999999886655443
No 144
>PLN00023 GTP-binding protein; Provisional
Probab=97.83 E-value=2.3e-05 Score=86.80 Aligned_cols=73 Identities=15% Similarity=0.103 Sum_probs=54.9
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCC-------
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPC------- 718 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~------- 718 (844)
+.++|||++|| ...+..|..||.+++++|+|.|+++- .-+......++.|..+..
T Consensus 83 v~LqIWDTAGq-ErfrsL~~~yyr~AdgiILVyDITdr-----------------~SFenL~kWl~eI~~~~~~s~p~~s 144 (334)
T PLN00023 83 FFVELWDVSGH-ERYKDCRSLFYSQINGVIFVHDLSQR-----------------RTKTSLQKWASEVAATGTFSAPLGS 144 (334)
T ss_pred EEEEEEECCCC-hhhhhhhHHhccCCCEEEEEEeCCCH-----------------HHHHHHHHHHHHHHHhccccccccc
Confidence 57999999999 78899999999999999999999861 122233344455544321
Q ss_pred ----CCCCcEEEEecccchhhh
Q 042025 719 ----FKDTPFVLILNKYDLFEE 736 (844)
Q Consensus 719 ----f~~tpiILfLNK~DLfee 736 (844)
..++|+||+.||.||..+
T Consensus 145 ~~~~~~~ipIILVGNK~DL~~~ 166 (334)
T PLN00023 145 GGPGGLPVPYIVIGNKADIAPK 166 (334)
T ss_pred ccccCCCCcEEEEEECcccccc
Confidence 236899999999999653
No 145
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=97.82 E-value=9.2e-05 Score=68.30 Aligned_cols=111 Identities=19% Similarity=0.235 Sum_probs=71.8
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcEE
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFV 725 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpiI 725 (844)
..+.+||++|+ ...+..|..++.+++++++++|+..+- .+ ..+-+.+....+...+. .+.|++
T Consensus 50 ~~~~~~D~~G~-~~~~~~~~~~~~~~~~~i~~~d~~~~v------~~------~~~~~~~~~~~~~~~~~----~~~p~i 112 (161)
T TIGR00231 50 YKFNLLDTAGQ-EDYRAIRRLYYRAVESSLRVFDIVILV------LD------VEEILEKQTKEIIHHAE----SNVPII 112 (161)
T ss_pred EEEEEEECCCc-ccchHHHHHHHhhhhEEEEEEEEeeee------hh------hhhHhHHHHHHHHHhcc----cCCcEE
Confidence 46889999999 788888988899999999999988531 11 01112122222222221 278999
Q ss_pred EEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHHHHH
Q 042025 726 LILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVDEAF 805 (844)
Q Consensus 726 LfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~evF 805 (844)
|++||.|+.... +. .. +...+..+. . .-+..++|.++.++.+.|
T Consensus 113 vv~nK~D~~~~~-----~~---------------------~~----~~~~~~~~~----~--~~~~~~sa~~~~gv~~~~ 156 (161)
T TIGR00231 113 LVGNKIDLRDAK-----LK---------------------TH----VAFLFAKLN----G--EPIIPLSAETGKNIDSAF 156 (161)
T ss_pred EEEEcccCCcch-----hh---------------------HH----HHHHHhhcc----C--CceEEeecCCCCCHHHHH
Confidence 999999996532 10 11 111122221 1 127889999999999999
Q ss_pred HHHH
Q 042025 806 KYIR 809 (844)
Q Consensus 806 ~~V~ 809 (844)
++|+
T Consensus 157 ~~l~ 160 (161)
T TIGR00231 157 KIVE 160 (161)
T ss_pred HHhh
Confidence 9875
No 146
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=97.77 E-value=0.00028 Score=79.59 Aligned_cols=116 Identities=19% Similarity=0.223 Sum_probs=73.8
Q ss_pred ceEEEEEeCCCCCCCcccc-----------eeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHH
Q 042025 646 TKYQLIRVNAKGMNEGCKW-----------VEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMI 714 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW-----------~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~ 714 (844)
..+.+||+.|+ +..++.+ ..++..+|++|+|+|.++ .. + .+.+.++..+.
T Consensus 220 ~~~~liDT~G~-~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~--~~-------------~---~~~~~~~~~~~ 280 (429)
T TIGR03594 220 KKYLLIDTAGI-RRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATE--GI-------------T---EQDLRIAGLIL 280 (429)
T ss_pred cEEEEEECCCc-cccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCC--Cc-------------c---HHHHHHHHHHH
Confidence 47999999998 4433333 235678999999999874 00 0 12234444444
Q ss_pred cCCCCCCCcEEEEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEe
Q 042025 715 RHPCFKDTPFVLILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQAR 794 (844)
Q Consensus 715 n~p~f~~tpiILfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~ 794 (844)
. .+.|+||++||.|+.+.. .. .+...+.+..++..+ ..+.++++|
T Consensus 281 ~----~~~~iiiv~NK~Dl~~~~---~~----------------------~~~~~~~~~~~~~~~------~~~~vi~~S 325 (429)
T TIGR03594 281 E----AGKALVIVVNKWDLVKDE---KT----------------------REEFKKELRRKLPFL------DFAPIVFIS 325 (429)
T ss_pred H----cCCcEEEEEECcccCCCH---HH----------------------HHHHHHHHHHhcccC------CCCceEEEe
Confidence 3 257999999999987210 00 122223333332211 224588999
Q ss_pred ecCCCCHHHHHHHHHHHHhhh
Q 042025 795 ARDRVTVDEAFKYIREVLKWD 815 (844)
Q Consensus 795 AtDte~I~evF~~V~e~Ik~~ 815 (844)
|.++.+|+++|+++.+.+...
T Consensus 326 A~~g~~v~~l~~~i~~~~~~~ 346 (429)
T TIGR03594 326 ALTGQGVDKLLDAIDEVYENA 346 (429)
T ss_pred CCCCCCHHHHHHHHHHHHHHh
Confidence 999999999999999877543
No 147
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=97.74 E-value=0.00019 Score=68.16 Aligned_cols=106 Identities=15% Similarity=0.138 Sum_probs=67.8
Q ss_pred ceEEEEEeCCCCCCCcc------cceeccC--CccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCC
Q 042025 646 TKYQLIRVNAKGMNEGC------KWVEMFE--DVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHP 717 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~------KW~~~Fe--dV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p 717 (844)
..+.+||+.|+ ..... .|..++. +++++|+|+|.++.++ ...++..+..
T Consensus 43 ~~~~liDtpG~-~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~--------------------~~~~~~~~~~-- 99 (158)
T cd01879 43 KEIEIVDLPGT-YSLSPYSEDEKVARDFLLGEKPDLIVNVVDATNLER--------------------NLYLTLQLLE-- 99 (158)
T ss_pred eEEEEEECCCc-cccCCCChhHHHHHHHhcCCCCcEEEEEeeCCcchh--------------------HHHHHHHHHH--
Confidence 47899999998 44333 2566664 9999999999875211 1123333333
Q ss_pred CCCCCcEEEEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecC
Q 042025 718 CFKDTPFVLILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARD 797 (844)
Q Consensus 718 ~f~~tpiILfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtD 797 (844)
.+.|+|+++||.|+.... .+. ... +-+... . .+.++.+||.+
T Consensus 100 --~~~~~iiv~NK~Dl~~~~----~~~---------------------~~~-~~~~~~----~------~~~~~~iSa~~ 141 (158)
T cd01879 100 --LGLPVVVALNMIDEAEKR----GIK---------------------IDL-DKLSEL----L------GVPVVPTSARK 141 (158)
T ss_pred --cCCCEEEEEehhhhcccc----cch---------------------hhH-HHHHHh----h------CCCeEEEEccC
Confidence 258999999999985421 010 000 111111 1 13477899999
Q ss_pred CCCHHHHHHHHHHHH
Q 042025 798 RVTVDEAFKYIREVL 812 (844)
Q Consensus 798 te~I~evF~~V~e~I 812 (844)
+.++++.|+++.+.+
T Consensus 142 ~~~~~~l~~~l~~~~ 156 (158)
T cd01879 142 GEGIDELKDAIAELA 156 (158)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999987753
No 148
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=97.72 E-value=7.1e-05 Score=75.74 Aligned_cols=133 Identities=17% Similarity=0.181 Sum_probs=85.4
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcEE
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFV 725 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpiI 725 (844)
+++.+||++|| ...|..|..|+.+++++++|+|..+ ..+..+..+.+...+....-.+.|+|
T Consensus 54 ~~~~~~Dt~gq-~~~~~~~~~y~~~~~~~l~~~d~~~-----------------~~~~~~~~~~~~~~l~~~~~~~~~ii 115 (219)
T COG1100 54 IKLQLWDTAGQ-EEYRSLRPEYYRGANGILIVYDSTL-----------------RESSDELTEEWLEELRELAPDDVPIL 115 (219)
T ss_pred EEEEeecCCCH-HHHHHHHHHHhcCCCEEEEEEeccc-----------------chhhhHHHHHHHHHHHHhCCCCceEE
Confidence 57899999999 7889999999999999999999874 24455556666655554333568999
Q ss_pred EEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeec--CCCCHHH
Q 042025 726 LILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARAR--DRVTVDE 803 (844)
Q Consensus 726 LfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~At--Dte~I~e 803 (844)
|+.||+|++.+......+..- +. . ...|........... ....- ...++|. ...+|..
T Consensus 116 lv~nK~Dl~~~~~~~~~~~~~--~~---~-------------~~~~~~~~~~~~~~~-~~~~~-~~~~s~~~~~~~~v~~ 175 (219)
T COG1100 116 LVGNKIDLFDEQSSSEEILNQ--LN---R-------------EVVLLVLAPKAVLPE-VANPA-LLETSAKSLTGPNVNE 175 (219)
T ss_pred EEecccccccchhHHHHHHhh--hh---c-------------CcchhhhHhHHhhhh-hcccc-eeEeecccCCCcCHHH
Confidence 999999999874332111100 00 0 000111111111110 11223 5677777 9999999
Q ss_pred HHHHHHHHHhhhh
Q 042025 804 AFKYIREVLKWDD 816 (844)
Q Consensus 804 vF~~V~e~Ik~~~ 816 (844)
.|..+...+....
T Consensus 176 ~~~~~~~~~~~~~ 188 (219)
T COG1100 176 LFKELLRKLLEEI 188 (219)
T ss_pred HHHHHHHHHHHhh
Confidence 9998888775443
No 149
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=97.70 E-value=0.00013 Score=83.62 Aligned_cols=117 Identities=19% Similarity=0.266 Sum_probs=73.6
Q ss_pred ceEEEEEeCCCCC------CCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCC
Q 042025 646 TKYQLIRVNAKGM------NEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCF 719 (844)
Q Consensus 646 ~~~~liDVGGQ~r------seR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f 719 (844)
..|.+||+.|... .....|+.+.+.+++||||||+++.+.. + ....+..-++.++.. ++.+
T Consensus 206 ~~~~laD~PGliega~~~~gLg~~fLrhier~~llI~VID~s~~~~~-----d------p~e~~~~i~~EL~~y--~~~L 272 (424)
T PRK12297 206 RSFVMADIPGLIEGASEGVGLGHQFLRHIERTRVIVHVIDMSGSEGR-----D------PIEDYEKINKELKLY--NPRL 272 (424)
T ss_pred ceEEEEECCCCcccccccchHHHHHHHHHhhCCEEEEEEeCCccccC-----C------hHHHHHHHHHHHhhh--chhc
Confidence 3689999998721 1223455567789999999999863210 1 122233333333332 3456
Q ss_pred CCCcEEEEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCC
Q 042025 720 KDTPFVLILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRV 799 (844)
Q Consensus 720 ~~tpiILfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte 799 (844)
.+.|+||++||+|+... .+.+.+ |.... + +.++.+||.+++
T Consensus 273 ~~kP~IVV~NK~DL~~~----------------------------~e~l~~-----l~~~l----~--~~i~~iSA~tge 313 (424)
T PRK12297 273 LERPQIVVANKMDLPEA----------------------------EENLEE-----FKEKL----G--PKVFPISALTGQ 313 (424)
T ss_pred cCCcEEEEEeCCCCcCC----------------------------HHHHHH-----HHHHh----C--CcEEEEeCCCCC
Confidence 68999999999997321 011111 21111 1 457889999999
Q ss_pred CHHHHHHHHHHHHhh
Q 042025 800 TVDEAFKYIREVLKW 814 (844)
Q Consensus 800 ~I~evF~~V~e~Ik~ 814 (844)
+|++.++++.+.+..
T Consensus 314 GI~eL~~~L~~~l~~ 328 (424)
T PRK12297 314 GLDELLYAVAELLEE 328 (424)
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999988754
No 150
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=97.63 E-value=0.00058 Score=72.50 Aligned_cols=125 Identities=15% Similarity=0.221 Sum_probs=73.0
Q ss_pred ceEEEEEeCCCCCCC-c----ccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCC
Q 042025 646 TKYQLIRVNAKGMNE-G----CKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFK 720 (844)
Q Consensus 646 ~~~~liDVGGQ~rse-R----~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~ 720 (844)
+.+++||.||| ... . ....+.|.+|.++|||+|...-| . .+ ...++.+.++..... +|
T Consensus 48 ~~l~iwD~pGq-~~~~~~~~~~~~~~if~~v~~LIyV~D~qs~~--~--~~-------~l~~~~~~i~~l~~~--sp--- 110 (232)
T PF04670_consen 48 LPLNIWDCPGQ-DDFMENYFNSQREEIFSNVGVLIYVFDAQSDD--Y--DE-------DLAYLSDCIEALRQY--SP--- 110 (232)
T ss_dssp CEEEEEEE-SS-CSTTHTTHTCCHHHHHCTESEEEEEEETT-ST--C--HH-------HHHHHHHHHHHHHHH--ST---
T ss_pred cEEEEEEcCCc-cccccccccccHHHHHhccCEEEEEEEccccc--H--HH-------HHHHHHHHHHHHHHh--CC---
Confidence 68999999999 322 2 34566799999999999988311 0 00 134444443333331 33
Q ss_pred CCcEEEEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCC
Q 042025 721 DTPFVLILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVT 800 (844)
Q Consensus 721 ~tpiILfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~ 800 (844)
++.|-+|+.|+|++.+.-+ +.+...+.++..+.......-.+.+|.||.-| ++
T Consensus 111 ~~~v~vfiHK~D~l~~~~r--------------------------~~~~~~~~~~i~~~~~~~~~~~~~~~~TSI~D-~S 163 (232)
T PF04670_consen 111 NIKVFVFIHKMDLLSEDER--------------------------EEIFRDIQQRIRDELEDLGIEDITFFLTSIWD-ES 163 (232)
T ss_dssp T-EEEEEEE-CCCS-HHHH--------------------------HHHHHHHHHHHHHHHHHTT-TSEEEEEE-TTS-TH
T ss_pred CCeEEEEEeecccCCHHHH--------------------------HHHHHHHHHHHHHHhhhccccceEEEeccCcC-cH
Confidence 6789999999999765211 22233333333332211111268899999999 68
Q ss_pred HHHHHHHHHHHHhh
Q 042025 801 VDEAFKYIREVLKW 814 (844)
Q Consensus 801 I~evF~~V~e~Ik~ 814 (844)
|.++|--|...|.-
T Consensus 164 ly~A~S~Ivq~LiP 177 (232)
T PF04670_consen 164 LYEAWSKIVQKLIP 177 (232)
T ss_dssp HHHHHHHHHHTTST
T ss_pred HHHHHHHHHHHHcc
Confidence 99999888776654
No 151
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.59 E-value=0.00025 Score=70.63 Aligned_cols=120 Identities=13% Similarity=0.197 Sum_probs=86.5
Q ss_pred CCCCceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCC
Q 042025 642 PQPLTKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKD 721 (844)
Q Consensus 642 ~~~~~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~ 721 (844)
++..+++|+||..|| ...|..=--||.++.++|.+-|++. .|+ . .|++-|-.++.+=...+
T Consensus 66 ~~kRiklQiwDTagq-EryrtiTTayyRgamgfiLmyDitN-------eeS-------f----~svqdw~tqIktysw~n 126 (193)
T KOG0093|consen 66 SDKRIKLQIWDTAGQ-ERYRTITTAYYRGAMGFILMYDITN-------EES-------F----NSVQDWITQIKTYSWDN 126 (193)
T ss_pred cccEEEEEEEecccc-hhhhHHHHHHhhccceEEEEEecCC-------HHH-------H----HHHHHHHHHheeeeccC
Confidence 445689999999999 5566555568999999999988873 111 2 35566667777767779
Q ss_pred CcEEEEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCH
Q 042025 722 TPFVLILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTV 801 (844)
Q Consensus 722 tpiILfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I 801 (844)
+|+||+.||+|+-.|+. ++ .+....++.+ +. +-.+-|+|.+.-||
T Consensus 127 aqvilvgnKCDmd~eRv----is--------------------~e~g~~l~~~--LG---------fefFEtSaK~NinV 171 (193)
T KOG0093|consen 127 AQVILVGNKCDMDSERV----IS--------------------HERGRQLADQ--LG---------FEFFETSAKENINV 171 (193)
T ss_pred ceEEEEecccCCcccee----ee--------------------HHHHHHHHHH--hC---------hHHhhhcccccccH
Confidence 99999999999988742 11 1233333321 11 22566899999999
Q ss_pred HHHHHHHHHHHhhh
Q 042025 802 DEAFKYIREVLKWD 815 (844)
Q Consensus 802 ~evF~~V~e~Ik~~ 815 (844)
+.+|..+.++|-.+
T Consensus 172 k~~Fe~lv~~Ic~k 185 (193)
T KOG0093|consen 172 KQVFERLVDIICDK 185 (193)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998543
No 152
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=97.59 E-value=0.0002 Score=70.53 Aligned_cols=107 Identities=12% Similarity=0.255 Sum_probs=69.5
Q ss_pred EEEeCCCCCCCcccceec----cCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcEE
Q 042025 650 LIRVNAKGMNEGCKWVEM----FEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFV 725 (844)
Q Consensus 650 liDVGGQ~rseR~KW~~~----FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpiI 725 (844)
+||+.|+ ...+..|... +.++|++|||+|.++-+... .. .+++ + ..+.|++
T Consensus 41 ~iDtpG~-~~~~~~~~~~~~~~~~~ad~il~v~d~~~~~s~~------------~~------~~~~-~-----~~~~~ii 95 (158)
T PRK15467 41 DIDTPGE-YFSHPRWYHALITTLQDVDMLIYVHGANDPESRL------------PA------GLLD-I-----GVSKRQI 95 (158)
T ss_pred cccCCcc-ccCCHHHHHHHHHHHhcCCEEEEEEeCCCccccc------------CH------HHHh-c-----cCCCCeE
Confidence 5899998 5555566543 67999999999998632211 11 1121 1 1257899
Q ss_pred EEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHHHHH
Q 042025 726 LILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVDEAF 805 (844)
Q Consensus 726 LfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~evF 805 (844)
+++||.|+... + .+.+.+++. .+ +-.+.+++|||+++++|++.|
T Consensus 96 ~v~nK~Dl~~~-----------------------~----~~~~~~~~~----~~-----~~~~p~~~~Sa~~g~gi~~l~ 139 (158)
T PRK15467 96 AVISKTDMPDA-----------------------D----VAATRKLLL----ET-----GFEEPIFELNSHDPQSVQQLV 139 (158)
T ss_pred EEEEccccCcc-----------------------c----HHHHHHHHH----Hc-----CCCCCEEEEECCCccCHHHHH
Confidence 99999997431 0 122223332 11 111357889999999999999
Q ss_pred HHHHHHHhhhhh
Q 042025 806 KYIREVLKWDDE 817 (844)
Q Consensus 806 ~~V~e~Ik~~~~ 817 (844)
+++.+.+...+.
T Consensus 140 ~~l~~~~~~~~~ 151 (158)
T PRK15467 140 DYLASLTKQEEA 151 (158)
T ss_pred HHHHHhchhhhc
Confidence 999988866554
No 153
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=97.58 E-value=0.00017 Score=85.78 Aligned_cols=113 Identities=12% Similarity=0.070 Sum_probs=75.7
Q ss_pred CceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcE
Q 042025 645 LTKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPF 724 (844)
Q Consensus 645 ~~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpi 724 (844)
..++.+||+.|+ ...+..|..++..++++|+|+|.++-.+ .+++..+..... .+.|+
T Consensus 69 ~~~l~liDTPG~-~dF~~~v~~~l~~aD~aILVvDat~g~~------------------~qt~~~~~~~~~----~~ipi 125 (595)
T TIGR01393 69 TYVLNLIDTPGH-VDFSYEVSRSLAACEGALLLVDAAQGIE------------------AQTLANVYLALE----NDLEI 125 (595)
T ss_pred EEEEEEEECCCc-HHHHHHHHHHHHhCCEEEEEecCCCCCC------------------HhHHHHHHHHHH----cCCCE
Confidence 368999999999 7778889999999999999999885111 112233333333 25799
Q ss_pred EEEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHHHH
Q 042025 725 VLILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVDEA 804 (844)
Q Consensus 725 ILfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~ev 804 (844)
|+++||+|+.... .+...+-+.+. ..+. ...+..+||.++.||++.
T Consensus 126 IiViNKiDl~~~~---------------------------~~~~~~el~~~-lg~~------~~~vi~vSAktG~GI~~L 171 (595)
T TIGR01393 126 IPVINKIDLPSAD---------------------------PERVKKEIEEV-IGLD------ASEAILASAKTGIGIEEI 171 (595)
T ss_pred EEEEECcCCCccC---------------------------HHHHHHHHHHH-hCCC------cceEEEeeccCCCCHHHH
Confidence 9999999985310 01111112221 1111 123678999999999999
Q ss_pred HHHHHHHHhh
Q 042025 805 FKYIREVLKW 814 (844)
Q Consensus 805 F~~V~e~Ik~ 814 (844)
|++|.+.+..
T Consensus 172 le~I~~~lp~ 181 (595)
T TIGR01393 172 LEAIVKRVPP 181 (595)
T ss_pred HHHHHHhCCC
Confidence 9999887743
No 154
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.55 E-value=0.00073 Score=70.62 Aligned_cols=121 Identities=16% Similarity=0.158 Sum_probs=81.1
Q ss_pred CceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcE
Q 042025 645 LTKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPF 724 (844)
Q Consensus 645 ~~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpi 724 (844)
.++.++||..|| ...|.-=..||.++-+.+-|-|++- .--+ |.+.-|=.=+....=.+++|
T Consensus 62 ~vkaqIWDTAGQ-ERyrAitSaYYrgAvGAllVYDITr-----------------~~Tf-env~rWL~ELRdhad~nivi 122 (222)
T KOG0087|consen 62 TVKAQIWDTAGQ-ERYRAITSAYYRGAVGALLVYDITR-----------------RQTF-ENVERWLKELRDHADSNIVI 122 (222)
T ss_pred EEEEeeecccch-hhhccccchhhcccceeEEEEechh-----------------HHHH-HHHHHHHHHHHhcCCCCeEE
Confidence 579999999999 6666666669999999888878763 0011 12222222222222347899
Q ss_pred EEEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHHHH
Q 042025 725 VLILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVDEA 804 (844)
Q Consensus 725 ILfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~ev 804 (844)
+|+.||.||-. +..+|- +++.. |-.. -.++.+.|+|++..+|+.+
T Consensus 123 mLvGNK~DL~~--lraV~t----------------------e~~k~-----~Ae~------~~l~f~EtSAl~~tNVe~a 167 (222)
T KOG0087|consen 123 MLVGNKSDLNH--LRAVPT----------------------EDGKA-----FAEK------EGLFFLETSALDATNVEKA 167 (222)
T ss_pred EEeecchhhhh--ccccch----------------------hhhHh-----HHHh------cCceEEEecccccccHHHH
Confidence 99999999854 333331 22222 2221 2478999999999999999
Q ss_pred HHHHHHHHhhhhhcc
Q 042025 805 FKYIREVLKWDDEKE 819 (844)
Q Consensus 805 F~~V~e~Ik~~~~k~ 819 (844)
|.-+...|.....+.
T Consensus 168 F~~~l~~I~~~vs~k 182 (222)
T KOG0087|consen 168 FERVLTEIYKIVSKK 182 (222)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999888887766654
No 155
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=97.52 E-value=0.00049 Score=64.88 Aligned_cols=105 Identities=20% Similarity=0.266 Sum_probs=66.3
Q ss_pred ceEEEEEeCCCCCCCcc--------cceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCC
Q 042025 646 TKYQLIRVNAKGMNEGC--------KWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHP 717 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~--------KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p 717 (844)
..+.+||+.|. ...+. .|..++.+++++|||+|..+..+. .+ ..+++.+-.
T Consensus 45 ~~~~i~DtpG~-~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~-------------~~-----~~~~~~~~~-- 103 (157)
T cd01894 45 REFILIDTGGI-EPDDEGISKEIREQAELAIEEADVILFVVDGREGLTP-------------AD-----EEIAKYLRK-- 103 (157)
T ss_pred eEEEEEECCCC-CCchhHHHHHHHHHHHHHHHhCCEEEEEEeccccCCc-------------cH-----HHHHHHHHh--
Confidence 46889999998 44332 445677889999999998642111 11 122222221
Q ss_pred CCCCCcEEEEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecC
Q 042025 718 CFKDTPFVLILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARD 797 (844)
Q Consensus 718 ~f~~tpiILfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtD 797 (844)
.+.|+++++||.|+.... .. ...+..+. . . .+..+||.+
T Consensus 104 --~~~piiiv~nK~D~~~~~---------------------------~~------~~~~~~~~--~-~---~~~~~Sa~~ 142 (157)
T cd01894 104 --SKKPVILVVNKVDNIKEE---------------------------DE------AAEFYSLG--F-G---EPIPISAEH 142 (157)
T ss_pred --cCCCEEEEEECcccCChH---------------------------HH------HHHHHhcC--C-C---CeEEEeccc
Confidence 248999999999986521 00 01111221 1 1 256899999
Q ss_pred CCCHHHHHHHHHHHH
Q 042025 798 RVTVDEAFKYIREVL 812 (844)
Q Consensus 798 te~I~evF~~V~e~I 812 (844)
+.+++++|+++.+.+
T Consensus 143 ~~gv~~l~~~l~~~~ 157 (157)
T cd01894 143 GRGIGDLLDAILELL 157 (157)
T ss_pred CCCHHHHHHHHHhhC
Confidence 999999999998753
No 156
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=97.50 E-value=0.00091 Score=69.06 Aligned_cols=116 Identities=17% Similarity=0.206 Sum_probs=84.4
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcEE
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFV 725 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpiI 725 (844)
..+.++|..|| ......=.+|..+.++.+.|.|+++ ..-+++...+++.|+..+.-.+.|+|
T Consensus 51 ~~l~ilDt~g~-~~~~~~~~~~~~~~~gF~lVysitd-----------------~~SF~~~~~l~~~I~r~~~~~~~Piv 112 (196)
T KOG0395|consen 51 CMLEILDTAGQ-EEFSAMRDLYIRNGDGFLLVYSITD-----------------RSSFEEAKQLREQILRVKGRDDVPII 112 (196)
T ss_pred EEEEEEcCCCc-ccChHHHHHhhccCcEEEEEEECCC-----------------HHHHHHHHHHHHHHHHhhCcCCCCEE
Confidence 56889999997 3333333346778899999988875 56788999999999888888889999
Q ss_pred EEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHHHHH
Q 042025 726 LILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVDEAF 805 (844)
Q Consensus 726 LfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~evF 805 (844)
|+.||.|+..++ .++ .+++..+ ... -.+-..-|||....+|+++|
T Consensus 113 lVGNK~Dl~~~R--~V~----------------------~eeg~~l--------a~~---~~~~f~E~Sak~~~~v~~~F 157 (196)
T KOG0395|consen 113 LVGNKCDLERER--QVS----------------------EEEGKAL--------ARS---WGCAFIETSAKLNYNVDEVF 157 (196)
T ss_pred EEEEcccchhcc--ccC----------------------HHHHHHH--------HHh---cCCcEEEeeccCCcCHHHHH
Confidence 999999998752 121 1233222 111 12225678888889999999
Q ss_pred HHHHHHHhh
Q 042025 806 KYIREVLKW 814 (844)
Q Consensus 806 ~~V~e~Ik~ 814 (844)
.-+...+..
T Consensus 158 ~~L~r~~~~ 166 (196)
T KOG0395|consen 158 YELVREIRL 166 (196)
T ss_pred HHHHHHHHh
Confidence 999988766
No 157
>PRK10218 GTP-binding protein; Provisional
Probab=97.49 E-value=0.00055 Score=81.68 Aligned_cols=118 Identities=14% Similarity=0.088 Sum_probs=77.4
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcEE
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFV 725 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpiI 725 (844)
.++.+||+.|+ ...+..|..++..+|++|||||.++= .+.+....+..+.. .+.|+|
T Consensus 68 ~~inliDTPG~-~df~~~v~~~l~~aDg~ILVVDa~~G------------------~~~qt~~~l~~a~~----~gip~I 124 (607)
T PRK10218 68 YRINIVDTPGH-ADFGGEVERVMSMVDSVLLVVDAFDG------------------PMPQTRFVTKKAFA----YGLKPI 124 (607)
T ss_pred EEEEEEECCCc-chhHHHHHHHHHhCCEEEEEEecccC------------------ccHHHHHHHHHHHH----cCCCEE
Confidence 68999999999 77888899999999999999998741 01123333443333 367999
Q ss_pred EEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCC------
Q 042025 726 LILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRV------ 799 (844)
Q Consensus 726 LfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte------ 799 (844)
+++||+|+..+. | +.+.+=|...|..+........+.+.++||.++.
T Consensus 125 VviNKiD~~~a~--------------~-------------~~vl~ei~~l~~~l~~~~~~~~~PVi~~SA~~G~~~~~~~ 177 (607)
T PRK10218 125 VVINKVDRPGAR--------------P-------------DWVVDQVFDLFVNLDATDEQLDFPIVYASALNGIAGLDHE 177 (607)
T ss_pred EEEECcCCCCCc--------------h-------------hHHHHHHHHHHhccCccccccCCCEEEeEhhcCcccCCcc
Confidence 999999986431 1 1112223334433321111245778999999987
Q ss_pred ----CHHHHHHHHHHHHh
Q 042025 800 ----TVDEAFKYIREVLK 813 (844)
Q Consensus 800 ----~I~evF~~V~e~Ik 813 (844)
++...|+.|.+.+-
T Consensus 178 ~~~~~i~~Lld~Ii~~iP 195 (607)
T PRK10218 178 DMAEDMTPLYQAIVDHVP 195 (607)
T ss_pred ccccchHHHHHHHHHhCC
Confidence 46777776666653
No 158
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=97.47 E-value=0.0007 Score=62.37 Aligned_cols=111 Identities=22% Similarity=0.172 Sum_probs=68.6
Q ss_pred eEEEEEeCCCCCCCc-------ccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCC
Q 042025 647 KYQLIRVNAKGMNEG-------CKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCF 719 (844)
Q Consensus 647 ~~~liDVGGQ~rseR-------~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f 719 (844)
.+.+||..|+ .... ..+..++.++++++||+|.++.+... ... ++... ..
T Consensus 46 ~~~~~Dt~g~-~~~~~~~~~~~~~~~~~~~~~d~il~v~~~~~~~~~~----------------~~~--~~~~~----~~ 102 (163)
T cd00880 46 PVVLIDTPGI-DEAGGLGREREELARRVLERADLILFVVDADLRADEE----------------EEK--LLELL----RE 102 (163)
T ss_pred cEEEEECCCC-CccccchhhHHHHHHHHHHhCCEEEEEEeCCCCCCHH----------------HHH--HHHHH----Hh
Confidence 6889999998 3322 23445788999999999998632211 111 22222 22
Q ss_pred CCCcEEEEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCC
Q 042025 720 KDTPFVLILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRV 799 (844)
Q Consensus 720 ~~tpiILfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte 799 (844)
.+.|+++++||.|+..+. . ...... ...... .......++.+||.++.
T Consensus 103 ~~~~~ivv~nK~D~~~~~------~--------------------~~~~~~--~~~~~~----~~~~~~~~~~~sa~~~~ 150 (163)
T cd00880 103 RGKPVLLVLNKIDLLPEE------E--------------------EEELLE--LRLLIL----LLLLGLPVIAVSALTGE 150 (163)
T ss_pred cCCeEEEEEEccccCChh------h--------------------HHHHHH--HHHhhc----ccccCCceEEEeeeccC
Confidence 468999999999986530 0 111111 000111 11245568888999999
Q ss_pred CHHHHHHHHHHHH
Q 042025 800 TVDEAFKYIREVL 812 (844)
Q Consensus 800 ~I~evF~~V~e~I 812 (844)
++.+.++++.+.+
T Consensus 151 ~v~~l~~~l~~~~ 163 (163)
T cd00880 151 GIDELREALIEAL 163 (163)
T ss_pred CHHHHHHHHHhhC
Confidence 9999999998653
No 159
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=97.45 E-value=7.7e-05 Score=76.38 Aligned_cols=74 Identities=19% Similarity=0.326 Sum_probs=53.4
Q ss_pred ceEEEEEeCCCCCCCcccceec---cCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCC--C
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEM---FEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCF--K 720 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~---FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f--~ 720 (844)
.+++++|+-|+ ...|.+-... ..++.+||||||.+.+ ...+.+.-+++-.|+.++.+ .
T Consensus 49 ~~~~lvD~PGH-~rlr~~~~~~~~~~~~~k~IIfvvDSs~~----------------~~~~~~~Ae~Ly~iL~~~~~~~~ 111 (181)
T PF09439_consen 49 KKLRLVDIPGH-PRLRSKLLDELKYLSNAKGIIFVVDSSTD----------------QKELRDVAEYLYDILSDTEVQKN 111 (181)
T ss_dssp TCECEEEETT--HCCCHHHHHHHHHHGGEEEEEEEEETTTH----------------HHHHHHHHHHHHHHHHHHHCCTT
T ss_pred CEEEEEECCCc-HHHHHHHHHhhhchhhCCEEEEEEeCccc----------------hhhHHHHHHHHHHHHHhhhhccC
Confidence 46899999999 6777765554 6789999999998842 23366777777777776553 4
Q ss_pred CCcEEEEecccchhhh
Q 042025 721 DTPFVLILNKYDLFEE 736 (844)
Q Consensus 721 ~tpiILfLNK~DLfee 736 (844)
..||+|+.||+|+|..
T Consensus 112 ~~piLIacNK~Dl~~A 127 (181)
T PF09439_consen 112 KPPILIACNKQDLFTA 127 (181)
T ss_dssp --EEEEEEE-TTSTT-
T ss_pred CCCEEEEEeCcccccc
Confidence 5899999999999975
No 160
>PRK03003 GTP-binding protein Der; Reviewed
Probab=97.43 E-value=0.00016 Score=83.52 Aligned_cols=107 Identities=14% Similarity=0.095 Sum_probs=68.2
Q ss_pred ceEEEEEeCCCCCC--------CcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCC
Q 042025 646 TKYQLIRVNAKGMN--------EGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHP 717 (844)
Q Consensus 646 ~~~~liDVGGQ~rs--------eR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p 717 (844)
..+.+||++|+ .. .+..|..++.++|+||||+|.++- . +..-. .++ .++..
T Consensus 86 ~~~~l~DT~G~-~~~~~~~~~~~~~~~~~~~~~aD~il~VvD~~~~-------~--------s~~~~---~i~-~~l~~- 144 (472)
T PRK03003 86 RRFTVVDTGGW-EPDAKGLQASVAEQAEVAMRTADAVLFVVDATVG-------A--------TATDE---AVA-RVLRR- 144 (472)
T ss_pred cEEEEEeCCCc-CCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCC-------C--------CHHHH---HHH-HHHHH-
Confidence 36889999998 32 233466788999999999999851 0 11111 122 22221
Q ss_pred CCCCCcEEEEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecC
Q 042025 718 CFKDTPFVLILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARD 797 (844)
Q Consensus 718 ~f~~tpiILfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtD 797 (844)
.+.|+||++||+|+... .. +. .+ |..+. . + . ++.+||.+
T Consensus 145 --~~~piilV~NK~Dl~~~-------~~--------------------~~-~~-----~~~~g--~-~-~--~~~iSA~~ 183 (472)
T PRK03003 145 --SGKPVILAANKVDDERG-------EA--------------------DA-AA-----LWSLG--L-G-E--PHPVSALH 183 (472)
T ss_pred --cCCCEEEEEECccCCcc-------ch--------------------hh-HH-----HHhcC--C-C-C--eEEEEcCC
Confidence 46899999999998531 00 00 11 11111 1 1 1 35799999
Q ss_pred CCCHHHHHHHHHHHHhh
Q 042025 798 RVTVDEAFKYIREVLKW 814 (844)
Q Consensus 798 te~I~evF~~V~e~Ik~ 814 (844)
+.||++.|++|.+.+..
T Consensus 184 g~gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 184 GRGVGDLLDAVLAALPE 200 (472)
T ss_pred CCCcHHHHHHHHhhccc
Confidence 99999999999988754
No 161
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=97.40 E-value=0.0011 Score=78.90 Aligned_cols=112 Identities=17% Similarity=0.089 Sum_probs=72.7
Q ss_pred eEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcEEE
Q 042025 647 KYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFVL 726 (844)
Q Consensus 647 ~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpiIL 726 (844)
++.+||+.|+ ......|..++..+|++|+|||..+- .+.++++.+...- ..+.|+|+
T Consensus 136 ~i~~iDTPGh-e~F~~~r~rga~~aDiaILVVda~dg------------------v~~qT~e~i~~~~----~~~vPiIV 192 (587)
T TIGR00487 136 MITFLDTPGH-EAFTSMRARGAKVTDIVVLVVAADDG------------------VMPQTIEAISHAK----AANVPIIV 192 (587)
T ss_pred EEEEEECCCC-cchhhHHHhhhccCCEEEEEEECCCC------------------CCHhHHHHHHHHH----HcCCCEEE
Confidence 7899999999 77778888889999999999987641 1122333332221 23689999
Q ss_pred EecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHHHHHH
Q 042025 727 ILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVDEAFK 806 (844)
Q Consensus 727 fLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~evF~ 806 (844)
++||+|+.... .+.+.+++... .+....-+..+.+..+||++++||++.|+
T Consensus 193 viNKiDl~~~~---------------------------~e~v~~~L~~~--g~~~~~~~~~~~~v~iSAktGeGI~eLl~ 243 (587)
T TIGR00487 193 AINKIDKPEAN---------------------------PDRVKQELSEY--GLVPEDWGGDTIFVPVSALTGDGIDELLD 243 (587)
T ss_pred EEECcccccCC---------------------------HHHHHHHHHHh--hhhHHhcCCCceEEEEECCCCCChHHHHH
Confidence 99999985310 11222222210 11100012345677899999999999999
Q ss_pred HHHH
Q 042025 807 YIRE 810 (844)
Q Consensus 807 ~V~e 810 (844)
++..
T Consensus 244 ~I~~ 247 (587)
T TIGR00487 244 MILL 247 (587)
T ss_pred hhhh
Confidence 9864
No 162
>PRK05433 GTP-binding protein LepA; Provisional
Probab=97.39 E-value=0.00095 Score=79.61 Aligned_cols=113 Identities=13% Similarity=0.086 Sum_probs=76.5
Q ss_pred CceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcE
Q 042025 645 LTKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPF 724 (844)
Q Consensus 645 ~~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpi 724 (844)
...+.+||+.|+ ...+..|..++..++++|+|||.++-.+ .+++..|..... .+.|+
T Consensus 73 ~~~lnLiDTPGh-~dF~~~v~~sl~~aD~aILVVDas~gv~------------------~qt~~~~~~~~~----~~lpi 129 (600)
T PRK05433 73 TYILNLIDTPGH-VDFSYEVSRSLAACEGALLVVDASQGVE------------------AQTLANVYLALE----NDLEI 129 (600)
T ss_pred cEEEEEEECCCc-HHHHHHHHHHHHHCCEEEEEEECCCCCC------------------HHHHHHHHHHHH----CCCCE
Confidence 368999999999 7778889999999999999999985110 122233333332 26799
Q ss_pred EEEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHHHH
Q 042025 725 VLILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVDEA 804 (844)
Q Consensus 725 ILfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~ev 804 (844)
|+++||+|+..+. .+...+-|.+. ..+ ....+..+||.++.||.+.
T Consensus 130 IvViNKiDl~~a~---------------------------~~~v~~ei~~~-lg~------~~~~vi~iSAktG~GI~~L 175 (600)
T PRK05433 130 IPVLNKIDLPAAD---------------------------PERVKQEIEDV-IGI------DASDAVLVSAKTGIGIEEV 175 (600)
T ss_pred EEEEECCCCCccc---------------------------HHHHHHHHHHH-hCC------CcceEEEEecCCCCCHHHH
Confidence 9999999985320 01111112221 111 1234788999999999999
Q ss_pred HHHHHHHHhh
Q 042025 805 FKYIREVLKW 814 (844)
Q Consensus 805 F~~V~e~Ik~ 814 (844)
|++|.+.+..
T Consensus 176 l~~I~~~lp~ 185 (600)
T PRK05433 176 LEAIVERIPP 185 (600)
T ss_pred HHHHHHhCcc
Confidence 9999887754
No 163
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=97.38 E-value=0.0013 Score=79.65 Aligned_cols=115 Identities=15% Similarity=0.127 Sum_probs=72.2
Q ss_pred ceEEEEEeCCCCCCCcccce----------eccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHc
Q 042025 646 TKYQLIRVNAKGMNEGCKWV----------EMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIR 715 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~----------~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n 715 (844)
..+.+||+.|+.+..+..|. .+++.++++|+|+|.++-.+ .+.+.++..+..
T Consensus 498 ~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~~i~~advvilViDat~~~s------------------~~~~~i~~~~~~ 559 (712)
T PRK09518 498 EDWLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERSELALFLFDASQPIS------------------EQDLKVMSMAVD 559 (712)
T ss_pred CEEEEEECCCcccCcccchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCC------------------HHHHHHHHHHHH
Confidence 36889999998334444552 23578999999999885110 112344555544
Q ss_pred CCCCCCCcEEEEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEee
Q 042025 716 HPCFKDTPFVLILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARA 795 (844)
Q Consensus 716 ~p~f~~tpiILfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~A 795 (844)
.+.|+||++||+|+..+.- .+...+.+...|..+ .-.-++++||
T Consensus 560 ----~~~piIiV~NK~DL~~~~~--------------------------~~~~~~~~~~~l~~~------~~~~ii~iSA 603 (712)
T PRK09518 560 ----AGRALVLVFNKWDLMDEFR--------------------------RQRLERLWKTEFDRV------TWARRVNLSA 603 (712)
T ss_pred ----cCCCEEEEEEchhcCChhH--------------------------HHHHHHHHHHhccCC------CCCCEEEEEC
Confidence 3689999999999864210 011111122222111 1123678999
Q ss_pred cCCCCHHHHHHHHHHHHhh
Q 042025 796 RDRVTVDEAFKYIREVLKW 814 (844)
Q Consensus 796 tDte~I~evF~~V~e~Ik~ 814 (844)
+++.+|+++|+.+.+.+..
T Consensus 604 ktg~gv~~L~~~i~~~~~~ 622 (712)
T PRK09518 604 KTGWHTNRLAPAMQEALES 622 (712)
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999999888765
No 164
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.34 E-value=0.00055 Score=68.51 Aligned_cols=120 Identities=18% Similarity=0.149 Sum_probs=82.3
Q ss_pred CceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcE
Q 042025 645 LTKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPF 724 (844)
Q Consensus 645 ~~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpi 724 (844)
.+++++||..|| ...|..=..||.++.+-+.|-|++.-|.+- ..+|-|.+++.+ . -.+.-+
T Consensus 57 ~vKLQIWDTAGQ-ErFRSVtRsYYRGAAGAlLVYD~Tsrdsfn----------aLtnWL~DaR~l-----A---s~nIvv 117 (214)
T KOG0086|consen 57 TVKLQIWDTAGQ-ERFRSVTRSYYRGAAGALLVYDITSRDSFN----------ALTNWLTDARTL-----A---SPNIVV 117 (214)
T ss_pred EEEEEEeecccH-HHHHHHHHHHhccccceEEEEeccchhhHH----------HHHHHHHHHHhh-----C---CCcEEE
Confidence 478999999999 788888889999999988887877422211 034555554433 1 124456
Q ss_pred EEEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHHHH
Q 042025 725 VLILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVDEA 804 (844)
Q Consensus 725 ILfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~ev 804 (844)
||..||.||-.++ ..+ ..+|.. |- ....+..|-|+|.+|+||+++
T Consensus 118 iL~GnKkDL~~~R----~Vt--------------------flEAs~-----Fa------qEnel~flETSa~TGeNVEEa 162 (214)
T KOG0086|consen 118 ILCGNKKDLDPER----EVT--------------------FLEASR-----FA------QENELMFLETSALTGENVEEA 162 (214)
T ss_pred EEeCChhhcChhh----hhh--------------------HHHHHh-----hh------cccceeeeeecccccccHHHH
Confidence 7777999997652 111 223332 22 235678899999999999999
Q ss_pred HHHHHHHHhhhhhc
Q 042025 805 FKYIREVLKWDDEK 818 (844)
Q Consensus 805 F~~V~e~Ik~~~~k 818 (844)
|--+..+|+.+-+-
T Consensus 163 Fl~c~~tIl~kIE~ 176 (214)
T KOG0086|consen 163 FLKCARTILNKIES 176 (214)
T ss_pred HHHHHHHHHHHHhh
Confidence 99888888776553
No 165
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=97.33 E-value=0.00089 Score=67.57 Aligned_cols=107 Identities=19% Similarity=0.256 Sum_probs=66.5
Q ss_pred eEEEEEeCCCCCCCcccce--------eccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCC
Q 042025 647 KYQLIRVNAKGMNEGCKWV--------EMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPC 718 (844)
Q Consensus 647 ~~~liDVGGQ~rseR~KW~--------~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~ 718 (844)
.+.+||+.|. ......|. ..+.++++++||+|+++... ...+..-..+|+.+ .
T Consensus 90 ~~~i~Dt~G~-~~~~~~~~~~~~~~~~~~~~~~d~ii~v~D~~~~~~--------------~~~~~~~~~~l~~~----~ 150 (204)
T cd01878 90 EVLLTDTVGF-IRDLPHQLVEAFRSTLEEVAEADLLLHVVDASDPDY--------------EEQIETVEKVLKEL----G 150 (204)
T ss_pred eEEEeCCCcc-ccCCCHHHHHHHHHHHHHHhcCCeEEEEEECCCCCh--------------hhHHHHHHHHHHHc----C
Confidence 5788999987 32222221 23568999999999885211 11222233344333 2
Q ss_pred CCCCcEEEEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCC
Q 042025 719 FKDTPFVLILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDR 798 (844)
Q Consensus 719 f~~tpiILfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDt 798 (844)
..+.|++|++||.|+..+.. .. .+.. .....++.+||.++
T Consensus 151 ~~~~~viiV~NK~Dl~~~~~--------------------------~~--------~~~~------~~~~~~~~~Sa~~~ 190 (204)
T cd01878 151 AEDIPMILVLNKIDLLDDEE--------------------------LE--------ERLE------AGRPDAVFISAKTG 190 (204)
T ss_pred cCCCCEEEEEEccccCChHH--------------------------HH--------HHhh------cCCCceEEEEcCCC
Confidence 34689999999999865310 00 0111 12234789999999
Q ss_pred CCHHHHHHHHHHHH
Q 042025 799 VTVDEAFKYIREVL 812 (844)
Q Consensus 799 e~I~evF~~V~e~I 812 (844)
.+++++|+||.+.|
T Consensus 191 ~gi~~l~~~L~~~~ 204 (204)
T cd01878 191 EGLDELLEAIEELL 204 (204)
T ss_pred CCHHHHHHHHHhhC
Confidence 99999999987653
No 166
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=97.32 E-value=0.00079 Score=80.16 Aligned_cols=118 Identities=18% Similarity=0.159 Sum_probs=78.3
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcEE
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFV 725 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpiI 725 (844)
.++.+||+.|+ ......|..++..+|++|+|||.++ | -+.++...|..+.. .+.|+|
T Consensus 64 ~kinlIDTPGh-~DF~~ev~~~l~~aD~alLVVDa~~-----------G-------~~~qT~~~l~~a~~----~~ip~I 120 (594)
T TIGR01394 64 TKINIVDTPGH-ADFGGEVERVLGMVDGVLLLVDASE-----------G-------PMPQTRFVLKKALE----LGLKPI 120 (594)
T ss_pred EEEEEEECCCH-HHHHHHHHHHHHhCCEEEEEEeCCC-----------C-------CcHHHHHHHHHHHH----CCCCEE
Confidence 58999999999 6777788889999999999999874 1 12344555666555 357999
Q ss_pred EEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCC------
Q 042025 726 LILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRV------ 799 (844)
Q Consensus 726 LfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte------ 799 (844)
|++||+|+..+. .+++.+-+...|..+........+-+.++||.++.
T Consensus 121 VviNKiD~~~a~---------------------------~~~v~~ei~~l~~~~g~~~e~l~~pvl~~SA~~g~~~~~~~ 173 (594)
T TIGR01394 121 VVINKIDRPSAR---------------------------PDEVVDEVFDLFAELGADDEQLDFPIVYASGRAGWASLDLD 173 (594)
T ss_pred EEEECCCCCCcC---------------------------HHHHHHHHHHHHHhhccccccccCcEEechhhcCcccccCc
Confidence 999999985421 11122223333433321111123447888998885
Q ss_pred ----CHHHHHHHHHHHHh
Q 042025 800 ----TVDEAFKYIREVLK 813 (844)
Q Consensus 800 ----~I~evF~~V~e~Ik 813 (844)
++...|+.+.+.+-
T Consensus 174 ~~~~gi~~Lld~Iv~~lP 191 (594)
T TIGR01394 174 DPSDNMAPLFDAIVRHVP 191 (594)
T ss_pred ccccCHHHHHHHHHHhCC
Confidence 78888888877664
No 167
>CHL00189 infB translation initiation factor 2; Provisional
Probab=97.31 E-value=0.00087 Score=81.48 Aligned_cols=115 Identities=13% Similarity=0.117 Sum_probs=75.2
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcEE
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFV 725 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpiI 725 (844)
..+.|||+.|+ ......|..++..+|++|+|||..+-. +.++++.+..+. -.+.|+|
T Consensus 295 ~kItfiDTPGh-e~F~~mr~rg~~~aDiaILVVDA~dGv------------------~~QT~E~I~~~k----~~~iPiI 351 (742)
T CHL00189 295 QKIVFLDTPGH-EAFSSMRSRGANVTDIAILIIAADDGV------------------KPQTIEAINYIQ----AANVPII 351 (742)
T ss_pred eEEEEEECCcH-HHHHHHHHHHHHHCCEEEEEEECcCCC------------------ChhhHHHHHHHH----hcCceEE
Confidence 57999999999 677788989999999999999976411 112223333222 2468999
Q ss_pred EEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHHHHH
Q 042025 726 LILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVDEAF 805 (844)
Q Consensus 726 LfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~evF 805 (844)
|++||+|+.... .+.+.+.+.. + ++.....+..+.+..+||.++.+|++.|
T Consensus 352 VViNKiDl~~~~---------------------------~e~v~~eL~~-~-~ll~e~~g~~vpvv~VSAktG~GIdeLl 402 (742)
T CHL00189 352 VAINKIDKANAN---------------------------TERIKQQLAK-Y-NLIPEKWGGDTPMIPISASQGTNIDKLL 402 (742)
T ss_pred EEEECCCccccC---------------------------HHHHHHHHHH-h-ccchHhhCCCceEEEEECCCCCCHHHHH
Confidence 999999986421 0111111111 0 1100001234678899999999999999
Q ss_pred HHHHHHH
Q 042025 806 KYIREVL 812 (844)
Q Consensus 806 ~~V~e~I 812 (844)
++|....
T Consensus 403 e~I~~l~ 409 (742)
T CHL00189 403 ETILLLA 409 (742)
T ss_pred Hhhhhhh
Confidence 9987653
No 168
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=97.29 E-value=0.0012 Score=80.83 Aligned_cols=113 Identities=18% Similarity=0.126 Sum_probs=73.1
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcEE
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFV 725 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpiI 725 (844)
..+.|||+.|+ ......|...+..+|++|+|||..+ | .+.++++.+..+- ..+.|+|
T Consensus 337 ~~ItfiDTPGh-e~F~~m~~rga~~aDiaILVVdAdd-----------G-------v~~qT~e~i~~a~----~~~vPiI 393 (787)
T PRK05306 337 GKITFLDTPGH-EAFTAMRARGAQVTDIVVLVVAADD-----------G-------VMPQTIEAINHAK----AAGVPII 393 (787)
T ss_pred EEEEEEECCCC-ccchhHHHhhhhhCCEEEEEEECCC-----------C-------CCHhHHHHHHHHH----hcCCcEE
Confidence 46899999999 7778888888999999999999764 1 1223333333221 2468999
Q ss_pred EEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHHHHH
Q 042025 726 LILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVDEAF 805 (844)
Q Consensus 726 LfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~evF 805 (844)
|++||+|+..... +.+..-+.. .++....-+..+.+..+||.++.||++.|
T Consensus 394 VviNKiDl~~a~~---------------------------e~V~~eL~~--~~~~~e~~g~~vp~vpvSAktG~GI~eLl 444 (787)
T PRK05306 394 VAINKIDKPGANP---------------------------DRVKQELSE--YGLVPEEWGGDTIFVPVSAKTGEGIDELL 444 (787)
T ss_pred EEEECccccccCH---------------------------HHHHHHHHH--hcccHHHhCCCceEEEEeCCCCCCchHHH
Confidence 9999999854210 011110110 01100001234668889999999999999
Q ss_pred HHHHH
Q 042025 806 KYIRE 810 (844)
Q Consensus 806 ~~V~e 810 (844)
++|..
T Consensus 445 e~I~~ 449 (787)
T PRK05306 445 EAILL 449 (787)
T ss_pred Hhhhh
Confidence 98874
No 169
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=97.29 E-value=0.0012 Score=78.49 Aligned_cols=119 Identities=13% Similarity=0.165 Sum_probs=75.7
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCc-E
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTP-F 724 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tp-i 724 (844)
..+.+||+.|+ ....+.+...+.++|++|+|||.++- -+.++.+.+. ++.. .+.| +
T Consensus 50 ~~v~~iDtPGh-e~f~~~~~~g~~~aD~aILVVDa~~G------------------~~~qT~ehl~-il~~---lgi~~i 106 (581)
T TIGR00475 50 YRLGFIDVPGH-EKFISNAIAGGGGIDAALLVVDADEG------------------VMTQTGEHLA-VLDL---LGIPHT 106 (581)
T ss_pred EEEEEEECCCH-HHHHHHHHhhhccCCEEEEEEECCCC------------------CcHHHHHHHH-HHHH---cCCCeE
Confidence 57899999999 67777788888999999999998751 0112222222 1221 2566 9
Q ss_pred EEEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHHHH
Q 042025 725 VLILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVDEA 804 (844)
Q Consensus 725 ILfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~ev 804 (844)
||++||+|+..+. . .+...+.+...+.... . ...+.+..+||.+++||++.
T Consensus 107 IVVlNK~Dlv~~~----~----------------------~~~~~~ei~~~l~~~~--~-~~~~~ii~vSA~tG~GI~eL 157 (581)
T TIGR00475 107 IVVITKADRVNEE----E----------------------IKRTEMFMKQILNSYI--F-LKNAKIFKTSAKTGQGIGEL 157 (581)
T ss_pred EEEEECCCCCCHH----H----------------------HHHHHHHHHHHHHHhC--C-CCCCcEEEEeCCCCCCchhH
Confidence 9999999986421 0 1111111221111110 0 12356889999999999999
Q ss_pred HHHHHHHHhhhh
Q 042025 805 FKYIREVLKWDD 816 (844)
Q Consensus 805 F~~V~e~Ik~~~ 816 (844)
++++.+.+....
T Consensus 158 ~~~L~~l~~~~~ 169 (581)
T TIGR00475 158 KKELKNLLESLD 169 (581)
T ss_pred HHHHHHHHHhCC
Confidence 999987765443
No 170
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=97.28 E-value=0.00061 Score=64.34 Aligned_cols=100 Identities=15% Similarity=0.239 Sum_probs=59.6
Q ss_pred EEEEeCCCCCCCccccee----ccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcE
Q 042025 649 QLIRVNAKGMNEGCKWVE----MFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPF 724 (844)
Q Consensus 649 ~liDVGGQ~rseR~KW~~----~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpi 724 (844)
++||+.|+ ......|.+ .+.+++++|+|+|+++-.... +. . |...+ ..|+
T Consensus 38 ~~iDt~G~-~~~~~~~~~~~~~~~~~ad~vilv~d~~~~~s~~-------------~~-----~-~~~~~------~~p~ 91 (142)
T TIGR02528 38 GAIDTPGE-YVENRRLYSALIVTAADADVIALVQSATDPESRF-------------PP-----G-FASIF------VKPV 91 (142)
T ss_pred eeecCchh-hhhhHHHHHHHHHHhhcCCEEEEEecCCCCCcCC-------------Ch-----h-HHHhc------cCCe
Confidence 46788887 333233432 467999999999998632211 10 1 11111 2399
Q ss_pred EEEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHHHH
Q 042025 725 VLILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVDEA 804 (844)
Q Consensus 725 ILfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~ev 804 (844)
||++||.|+.+.. .. .+.+.+|+.. . + ...++.+||.+++++++.
T Consensus 92 ilv~NK~Dl~~~~-----~~--------------------~~~~~~~~~~-----~----~-~~~~~~~Sa~~~~gi~~l 136 (142)
T TIGR02528 92 IGLVTKIDLAEAD-----VD--------------------IERAKELLET-----A----G-AEPIFEISSVDEQGLEAL 136 (142)
T ss_pred EEEEEeeccCCcc-----cC--------------------HHHHHHHHHH-----c----C-CCcEEEEecCCCCCHHHH
Confidence 9999999986420 00 1233333321 1 1 123668999999999999
Q ss_pred HHHHH
Q 042025 805 FKYIR 809 (844)
Q Consensus 805 F~~V~ 809 (844)
|+++.
T Consensus 137 ~~~l~ 141 (142)
T TIGR02528 137 VDYLN 141 (142)
T ss_pred HHHHh
Confidence 99874
No 171
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=97.27 E-value=0.0012 Score=74.82 Aligned_cols=119 Identities=17% Similarity=0.294 Sum_probs=72.3
Q ss_pred eEEEEEeCCCCCC--C----cccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHc-CCCC
Q 042025 647 KYQLIRVNAKGMN--E----GCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIR-HPCF 719 (844)
Q Consensus 647 ~~~liDVGGQ~rs--e----R~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n-~p~f 719 (844)
+|.|+|+.|.... + ..+.+.+++++++||||||++.+|. .+.+.+-..+.+.+.. .+.+
T Consensus 208 ~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radvlL~VVD~s~~~~--------------~d~~e~~~~l~~eL~~~~~~L 273 (390)
T PRK12298 208 SFVVADIPGLIEGASEGAGLGIRFLKHLERCRVLLHLIDIAPIDG--------------SDPVENARIIINELEKYSPKL 273 (390)
T ss_pred EEEEEeCCCccccccchhhHHHHHHHHHHhCCEEEEEeccCcccc--------------cChHHHHHHHHHHHHhhhhhh
Confidence 5899999997211 1 1223345789999999999985321 1222233333344433 2456
Q ss_pred CCCcEEEEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCC
Q 042025 720 KDTPFVLILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRV 799 (844)
Q Consensus 720 ~~tpiILfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte 799 (844)
.+.|+||++||+|+..++ . .....+.+. ... +....++.+||.++.
T Consensus 274 ~~kP~IlVlNKiDl~~~~----e----------------------l~~~l~~l~----~~~----~~~~~Vi~ISA~tg~ 319 (390)
T PRK12298 274 AEKPRWLVFNKIDLLDEE----E----------------------AEERAKAIV----EAL----GWEGPVYLISAASGL 319 (390)
T ss_pred cCCCEEEEEeCCccCChH----H----------------------HHHHHHHHH----HHh----CCCCCEEEEECCCCc
Confidence 678999999999986421 0 111111111 111 111236789999999
Q ss_pred CHHHHHHHHHHHHh
Q 042025 800 TVDEAFKYIREVLK 813 (844)
Q Consensus 800 ~I~evF~~V~e~Ik 813 (844)
+|++.+++|.+.+.
T Consensus 320 GIdeLl~~I~~~L~ 333 (390)
T PRK12298 320 GVKELCWDLMTFIE 333 (390)
T ss_pred CHHHHHHHHHHHhh
Confidence 99999999988774
No 172
>COG2229 Predicted GTPase [General function prediction only]
Probab=97.26 E-value=0.0013 Score=67.58 Aligned_cols=109 Identities=17% Similarity=0.177 Sum_probs=76.4
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcEE
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFV 725 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpiI 725 (844)
....++++-|| ...+..|.-+++++.+.|++||.++ .. -+ ++..+.+-+-.... .|++
T Consensus 68 ~~v~LfgtPGq-~RF~fm~~~l~~ga~gaivlVDss~-------~~---------~~--~a~~ii~f~~~~~~---ip~v 125 (187)
T COG2229 68 TGVHLFGTPGQ-ERFKFMWEILSRGAVGAIVLVDSSR-------PI---------TF--HAEEIIDFLTSRNP---IPVV 125 (187)
T ss_pred ceEEEecCCCc-HHHHHHHHHHhCCcceEEEEEecCC-------Cc---------ch--HHHHHHHHHhhccC---CCEE
Confidence 46889999999 8888999999999999999999985 11 11 33333333222111 8999
Q ss_pred EEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHHHHH
Q 042025 726 LILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVDEAF 805 (844)
Q Consensus 726 LfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~evF 805 (844)
|+.||+||+.. .. .+.+.+++. +. ...+.+..++|++++++++.+
T Consensus 126 Va~NK~DL~~a------~p--------------------pe~i~e~l~-----~~----~~~~~vi~~~a~e~~~~~~~L 170 (187)
T COG2229 126 VAINKQDLFDA------LP--------------------PEKIREALK-----LE----LLSVPVIEIDATEGEGARDQL 170 (187)
T ss_pred EEeeccccCCC------CC--------------------HHHHHHHHH-----hc----cCCCceeeeecccchhHHHHH
Confidence 99999999875 11 233333332 11 135668899999999999999
Q ss_pred HHHHHH
Q 042025 806 KYIREV 811 (844)
Q Consensus 806 ~~V~e~ 811 (844)
+.+...
T Consensus 171 ~~ll~~ 176 (187)
T COG2229 171 DVLLLK 176 (187)
T ss_pred HHHHhh
Confidence 766644
No 173
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=97.25 E-value=0.00092 Score=68.62 Aligned_cols=36 Identities=8% Similarity=0.056 Sum_probs=29.3
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCccEEEEEeeccc
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSD 682 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSD 682 (844)
.++.+||+.|+ ......+...+..++++|||||.++
T Consensus 77 ~~~~liDTpG~-~~~~~~~~~~~~~ad~~llVvD~~~ 112 (208)
T cd04166 77 RKFIIADTPGH-EQYTRNMVTGASTADLAILLVDARK 112 (208)
T ss_pred ceEEEEECCcH-HHHHHHHHHhhhhCCEEEEEEECCC
Confidence 47899999999 5444557777889999999999874
No 174
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=97.23 E-value=0.0019 Score=73.46 Aligned_cols=111 Identities=12% Similarity=0.028 Sum_probs=61.4
Q ss_pred ceEEEEEeCCCCCCCcccceec---cCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCC
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEM---FEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDT 722 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~---FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~t 722 (844)
.++.+||++|+ .. .|..+ ..++|++|||||.++-... .....+-+.+.. . +...
T Consensus 84 ~~i~liDtpG~-~~---~~~~~~~~~~~aD~~ilVvDa~~~~~~-------------~~~~~~~~~~~~---~---~~~~ 140 (425)
T PRK12317 84 YYFTIVDCPGH-RD---FVKNMITGASQADAAVLVVAADDAGGV-------------MPQTREHVFLAR---T---LGIN 140 (425)
T ss_pred eEEEEEECCCc-cc---chhhHhhchhcCCEEEEEEEcccCCCC-------------CcchHHHHHHHH---H---cCCC
Confidence 57999999998 33 34433 4579999999998741000 111111111111 1 2234
Q ss_pred cEEEEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHH
Q 042025 723 PFVLILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVD 802 (844)
Q Consensus 723 piILfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~ 802 (844)
+++|++||+|+.... - ...+...+.+...+..+. .....+.+..+||.+++||.
T Consensus 141 ~iivviNK~Dl~~~~-----~-------------------~~~~~~~~~i~~~l~~~g--~~~~~~~ii~iSA~~g~gi~ 194 (425)
T PRK12317 141 QLIVAINKMDAVNYD-----E-------------------KRYEEVKEEVSKLLKMVG--YKPDDIPFIPVSAFEGDNVV 194 (425)
T ss_pred eEEEEEEcccccccc-----H-------------------HHHHHHHHHHHHHHHhhC--CCcCcceEEEeecccCCCcc
Confidence 699999999986410 0 001112222322222211 12235778999999999998
Q ss_pred HHH
Q 042025 803 EAF 805 (844)
Q Consensus 803 evF 805 (844)
+.+
T Consensus 195 ~~~ 197 (425)
T PRK12317 195 KKS 197 (425)
T ss_pred ccc
Confidence 643
No 175
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=97.21 E-value=0.0021 Score=60.33 Aligned_cols=109 Identities=21% Similarity=0.250 Sum_probs=66.2
Q ss_pred ceEEEEEeCCCCCCCcc--------cceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCC
Q 042025 646 TKYQLIRVNAKGMNEGC--------KWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHP 717 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~--------KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p 717 (844)
..+.+||..|. ..... .+.+++.++++++||+|.++... + ... .+++.+...
T Consensus 51 ~~~~liDtpG~-~~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~------~------~~~------~~~~~~~~~- 110 (168)
T cd04163 51 AQIIFVDTPGI-HKPKKKLGERMVKAAWSALKDVDLVLFVVDASEPIG------E------GDE------FILELLKKS- 110 (168)
T ss_pred eEEEEEECCCC-CcchHHHHHHHHHHHHHHHHhCCEEEEEEECCCccC------c------hHH------HHHHHHHHh-
Confidence 46889999997 22221 23456788999999999986411 0 011 112222221
Q ss_pred CCCCCcEEEEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecC
Q 042025 718 CFKDTPFVLILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARD 797 (844)
Q Consensus 718 ~f~~tpiILfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtD 797 (844)
+.|+++++||.|+... .. . ......++ ... .+...+..+++.+
T Consensus 111 ---~~~~iiv~nK~Dl~~~------~~-----------------~--~~~~~~~~----~~~-----~~~~~~~~~s~~~ 153 (168)
T cd04163 111 ---KTPVILVLNKIDLVKD------KE-----------------D--LLPLLEKL----KEL-----GPFAEIFPISALK 153 (168)
T ss_pred ---CCCEEEEEEchhcccc------HH-----------------H--HHHHHHHH----Hhc-----cCCCceEEEEecc
Confidence 6799999999998631 00 0 11111212 111 1223467899999
Q ss_pred CCCHHHHHHHHHHH
Q 042025 798 RVTVDEAFKYIREV 811 (844)
Q Consensus 798 te~I~evF~~V~e~ 811 (844)
+.++++.|++|.+.
T Consensus 154 ~~~~~~l~~~l~~~ 167 (168)
T cd04163 154 GENVDELLEEIVKY 167 (168)
T ss_pred CCChHHHHHHHHhh
Confidence 99999999999764
No 176
>PRK00093 GTP-binding protein Der; Reviewed
Probab=97.21 E-value=0.0027 Score=72.00 Aligned_cols=114 Identities=19% Similarity=0.218 Sum_probs=72.2
Q ss_pred ceEEEEEeCCCCCCCcccc-----------eeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHH
Q 042025 646 TKYQLIRVNAKGMNEGCKW-----------VEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMI 714 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW-----------~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~ 714 (844)
..+.+||+.|. +...+.+ ..++..+|++|+|+|.++- . + ...+.++..+.
T Consensus 221 ~~~~lvDT~G~-~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~--------~-------~---~~~~~i~~~~~ 281 (435)
T PRK00093 221 QKYTLIDTAGI-RRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEG--------I-------T---EQDLRIAGLAL 281 (435)
T ss_pred eeEEEEECCCC-CCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCC--------C-------C---HHHHHHHHHHH
Confidence 46899999998 3322222 1245688999999998741 0 1 11233444444
Q ss_pred cCCCCCCCcEEEEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEe
Q 042025 715 RHPCFKDTPFVLILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQAR 794 (844)
Q Consensus 715 n~p~f~~tpiILfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~ 794 (844)
. .+.|+||++||.|+..+.. .+...+.+...+..+ ....++++|
T Consensus 282 ~----~~~~~ivv~NK~Dl~~~~~--------------------------~~~~~~~~~~~l~~~------~~~~i~~~S 325 (435)
T PRK00093 282 E----AGRALVIVVNKWDLVDEKT--------------------------MEEFKKELRRRLPFL------DYAPIVFIS 325 (435)
T ss_pred H----cCCcEEEEEECccCCCHHH--------------------------HHHHHHHHHHhcccc------cCCCEEEEe
Confidence 3 2579999999999874210 122233344333221 224589999
Q ss_pred ecCCCCHHHHHHHHHHHHhh
Q 042025 795 ARDRVTVDEAFKYIREVLKW 814 (844)
Q Consensus 795 AtDte~I~evF~~V~e~Ik~ 814 (844)
|.++.+|.+.|+++.+....
T Consensus 326 A~~~~gv~~l~~~i~~~~~~ 345 (435)
T PRK00093 326 ALTGQGVDKLLEAIDEAYEN 345 (435)
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 99999999999998876643
No 177
>PRK15494 era GTPase Era; Provisional
Probab=97.21 E-value=0.0036 Score=69.63 Aligned_cols=107 Identities=12% Similarity=0.236 Sum_probs=64.2
Q ss_pred ceEEEEEeCCCCCCC---------cccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcC
Q 042025 646 TKYQLIRVNAKGMNE---------GCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRH 716 (844)
Q Consensus 646 ~~~~liDVGGQ~rse---------R~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~ 716 (844)
.++.+||+.|+ ... |..|. ++.++|+||||||.++- ..... ..+++.+-..
T Consensus 100 ~qi~~~DTpG~-~~~~~~l~~~~~r~~~~-~l~~aDvil~VvD~~~s----------------~~~~~--~~il~~l~~~ 159 (339)
T PRK15494 100 TQVILYDTPGI-FEPKGSLEKAMVRCAWS-SLHSADLVLLIIDSLKS----------------FDDIT--HNILDKLRSL 159 (339)
T ss_pred eEEEEEECCCc-CCCcccHHHHHHHHHHH-HhhhCCEEEEEEECCCC----------------CCHHH--HHHHHHHHhc
Confidence 36899999998 321 11232 36799999999996540 11111 1223333221
Q ss_pred CCCCCCcEEEEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeec
Q 042025 717 PCFKDTPFVLILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARAR 796 (844)
Q Consensus 717 p~f~~tpiILfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~At 796 (844)
+.|.||++||+|+..+. ...+.+++.. . .....++.+||+
T Consensus 160 ----~~p~IlViNKiDl~~~~---------------------------~~~~~~~l~~----~-----~~~~~i~~iSAk 199 (339)
T PRK15494 160 ----NIVPIFLLNKIDIESKY---------------------------LNDIKAFLTE----N-----HPDSLLFPISAL 199 (339)
T ss_pred ----CCCEEEEEEhhcCcccc---------------------------HHHHHHHHHh----c-----CCCcEEEEEecc
Confidence 35778899999985310 1122222211 1 112457899999
Q ss_pred CCCCHHHHHHHHHHHH
Q 042025 797 DRVTVDEAFKYIREVL 812 (844)
Q Consensus 797 Dte~I~evF~~V~e~I 812 (844)
++.|+++.|+|+.+.+
T Consensus 200 tg~gv~eL~~~L~~~l 215 (339)
T PRK15494 200 SGKNIDGLLEYITSKA 215 (339)
T ss_pred CccCHHHHHHHHHHhC
Confidence 9999999999988754
No 178
>PRK03003 GTP-binding protein Der; Reviewed
Probab=97.20 E-value=0.004 Score=72.09 Aligned_cols=115 Identities=17% Similarity=0.188 Sum_probs=69.1
Q ss_pred ceEEEEEeCCCCCCCcc-ccee---------ccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHc
Q 042025 646 TKYQLIRVNAKGMNEGC-KWVE---------MFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIR 715 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~-KW~~---------~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n 715 (844)
..+++||+.|+.+..+. .|.. ++.+++++|+|+|.++ .. + .+.+.++..+..
T Consensus 259 ~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~-------~~--------s---~~~~~~~~~~~~ 320 (472)
T PRK03003 259 KTWRFVDTAGLRRRVKQASGHEYYASLRTHAAIEAAEVAVVLIDASE-------PI--------S---EQDQRVLSMVIE 320 (472)
T ss_pred EEEEEEECCCccccccccchHHHHHHHHHHHHHhcCCEEEEEEeCCC-------CC--------C---HHHHHHHHHHHH
Confidence 46889999998321111 1222 3568999999999885 10 0 112234454444
Q ss_pred CCCCCCCcEEEEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEee
Q 042025 716 HPCFKDTPFVLILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARA 795 (844)
Q Consensus 716 ~p~f~~tpiILfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~A 795 (844)
.+.|+||++||+|+..+.- .....+-+...+..+ .-..+++|||
T Consensus 321 ----~~~piIiV~NK~Dl~~~~~--------------------------~~~~~~~i~~~l~~~------~~~~~~~~SA 364 (472)
T PRK03003 321 ----AGRALVLAFNKWDLVDEDR--------------------------RYYLEREIDRELAQV------PWAPRVNISA 364 (472)
T ss_pred ----cCCCEEEEEECcccCChhH--------------------------HHHHHHHHHHhcccC------CCCCEEEEEC
Confidence 3689999999999964210 000111122211111 1123678999
Q ss_pred cCCCCHHHHHHHHHHHHhh
Q 042025 796 RDRVTVDEAFKYIREVLKW 814 (844)
Q Consensus 796 tDte~I~evF~~V~e~Ik~ 814 (844)
+++.+|+++|+.+.+.+..
T Consensus 365 k~g~gv~~lf~~i~~~~~~ 383 (472)
T PRK03003 365 KTGRAVDKLVPALETALES 383 (472)
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999999887743
No 179
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=97.19 E-value=0.0029 Score=67.73 Aligned_cols=108 Identities=14% Similarity=0.072 Sum_probs=65.7
Q ss_pred ceEEEEEeCCCCCCCccc--------ceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCC
Q 042025 646 TKYQLIRVNAKGMNEGCK--------WVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHP 717 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~K--------W~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p 717 (844)
..+.+||+.|. ...+.+ +..+++++|+|+||+|.++.. . .. ..+++.+-+
T Consensus 48 ~qii~vDTPG~-~~~~~~l~~~~~~~~~~~l~~aDvvl~VvD~~~~~-------~-------~~-----~~i~~~l~~-- 105 (270)
T TIGR00436 48 SQIIFIDTPGF-HEKKHSLNRLMMKEARSAIGGVDLILFVVDSDQWN-------G-------DG-----EFVLTKLQN-- 105 (270)
T ss_pred cEEEEEECcCC-CCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCC-------c-------hH-----HHHHHHHHh--
Confidence 35889999998 332222 345678999999999988511 0 11 122222222
Q ss_pred CCCCCcEEEEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecC
Q 042025 718 CFKDTPFVLILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARD 797 (844)
Q Consensus 718 ~f~~tpiILfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtD 797 (844)
.+.|+++++||.|+.... .+ .+...+ +.... +. -.+..+||++
T Consensus 106 --~~~p~ilV~NK~Dl~~~~----~~---------------------~~~~~~-----~~~~~----~~-~~v~~iSA~~ 148 (270)
T TIGR00436 106 --LKRPVVLTRNKLDNKFKD----KL---------------------LPLIDK-----YAILE----DF-KDIVPISALT 148 (270)
T ss_pred --cCCCEEEEEECeeCCCHH----HH---------------------HHHHHH-----HHhhc----CC-CceEEEecCC
Confidence 257999999999985310 00 111111 11111 11 1478899999
Q ss_pred CCCHHHHHHHHHHHH
Q 042025 798 RVTVDEAFKYIREVL 812 (844)
Q Consensus 798 te~I~evF~~V~e~I 812 (844)
+.|+++.++++.+.+
T Consensus 149 g~gi~~L~~~l~~~l 163 (270)
T TIGR00436 149 GDNTSFLAAFIEVHL 163 (270)
T ss_pred CCCHHHHHHHHHHhC
Confidence 999999999988765
No 180
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=97.18 E-value=0.00087 Score=79.74 Aligned_cols=137 Identities=12% Similarity=0.097 Sum_probs=77.8
Q ss_pred eEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcEEE
Q 042025 647 KYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFVL 726 (844)
Q Consensus 647 ~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpiIL 726 (844)
.+.+||++|| ...+..|..++..+|++|||+|.++= . ...-.+++.++. . .+.|+||
T Consensus 70 ~l~~iDTpG~-e~f~~l~~~~~~~aD~~IlVvD~~~g--~-------------~~qt~e~i~~l~---~----~~vpiIV 126 (590)
T TIGR00491 70 GLLFIDTPGH-EAFTNLRKRGGALADLAILIVDINEG--F-------------KPQTQEALNILR---M----YKTPFVV 126 (590)
T ss_pred cEEEEECCCc-HhHHHHHHHHHhhCCEEEEEEECCcC--C-------------CHhHHHHHHHHH---H----cCCCEEE
Confidence 4889999999 77778899999999999999998840 0 000112333322 1 3689999
Q ss_pred EecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhh--hcc------CCCCcEEEEEEeecCC
Q 042025 727 ILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDL--YAS------LTGRKLFVWQARARDR 798 (844)
Q Consensus 727 fLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L--~~s------~~~Rklyvh~T~AtDt 798 (844)
++||+|+....-.. ..|.|+..+.... .+-....++....+...+... ... .-+..+-+..+||+++
T Consensus 127 v~NK~Dl~~~~~~~---~~~~f~e~sak~~--~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tG 201 (590)
T TIGR00491 127 AANKIDRIPGWRSH---EGRPFMESFSKQE--IQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITG 201 (590)
T ss_pred EEECCCccchhhhc---cCchHHHHHHhhh--HHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCC
Confidence 99999997531100 0111222221100 000000112222222222211 000 0134577899999999
Q ss_pred CCHHHHHHHHHHH
Q 042025 799 VTVDEAFKYIREV 811 (844)
Q Consensus 799 e~I~evF~~V~e~ 811 (844)
+|+++.+.++...
T Consensus 202 eGideLl~~l~~l 214 (590)
T TIGR00491 202 EGIPELLTMLAGL 214 (590)
T ss_pred CChhHHHHHHHHH
Confidence 9999999988653
No 181
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=97.16 E-value=0.0049 Score=58.69 Aligned_cols=112 Identities=21% Similarity=0.269 Sum_probs=67.1
Q ss_pred eEEEEEeCCCCCCCcc-----------cceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHc
Q 042025 647 KYQLIRVNAKGMNEGC-----------KWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIR 715 (844)
Q Consensus 647 ~~~liDVGGQ~rseR~-----------KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n 715 (844)
.+.+||+.|. ..... ....++.+++++|+|+|.++- . . .+.+.+++.+..
T Consensus 51 ~~~iiDtpG~-~~~~~~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~-------~--------~---~~~~~~~~~~~~ 111 (174)
T cd01895 51 KYTLIDTAGI-RRKGKVEEGIEKYSVLRTLKAIERADVVLLVIDATEG-------I--------T---EQDLRIAGLILE 111 (174)
T ss_pred eEEEEECCCC-ccccchhccHHHHHHHHHHHHHhhcCeEEEEEeCCCC-------c--------c---hhHHHHHHHHHh
Confidence 5789999997 22110 012245689999999998741 0 1 112233333332
Q ss_pred CCCCCCCcEEEEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEee
Q 042025 716 HPCFKDTPFVLILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARA 795 (844)
Q Consensus 716 ~p~f~~tpiILfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~A 795 (844)
.+.|+++++||.|+....- .+ .+.+.+.+.+.+... ....++.+||
T Consensus 112 ----~~~~~iiv~nK~Dl~~~~~----------------------~~--~~~~~~~~~~~~~~~------~~~~~~~~Sa 157 (174)
T cd01895 112 ----EGKALVIVVNKWDLVEKDS----------------------KT--MKEFKKEIRRKLPFL------DYAPIVFISA 157 (174)
T ss_pred ----cCCCEEEEEeccccCCccH----------------------HH--HHHHHHHHHhhcccc------cCCceEEEec
Confidence 3579999999999875310 00 223333343332111 1245888999
Q ss_pred cCCCCHHHHHHHHHHH
Q 042025 796 RDRVTVDEAFKYIREV 811 (844)
Q Consensus 796 tDte~I~evF~~V~e~ 811 (844)
+++.++.++++++...
T Consensus 158 ~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 158 LTGQGVDKLFDAIDEV 173 (174)
T ss_pred cCCCCHHHHHHHHHHh
Confidence 9999999999998754
No 182
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=97.14 E-value=0.00032 Score=64.25 Aligned_cols=68 Identities=18% Similarity=0.193 Sum_probs=46.2
Q ss_pred eEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCC-CCCCCcEE
Q 042025 647 KYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHP-CFKDTPFV 725 (844)
Q Consensus 647 ~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p-~f~~tpiI 725 (844)
.+.+||++|+ ......|...+.+++++|||+|+++.+ -+.+..+++..+.+.. .-.+.|+|
T Consensus 51 ~~~~~d~~g~-~~~~~~~~~~~~~~d~~ilv~D~s~~~-----------------s~~~~~~~~~~l~~~~~~~~~~pii 112 (119)
T PF08477_consen 51 SLQFWDFGGQ-EEFYSQHQFFLKKADAVILVYDLSDPE-----------------SLEYLSQLLKWLKNIRKRDKNIPII 112 (119)
T ss_dssp EEEEEEESSS-HCHHCTSHHHHHHSCEEEEEEECCGHH-----------------HHHHHHHHHHHHHHHHHHSSCSEEE
T ss_pred EEEEEecCcc-ceecccccchhhcCcEEEEEEcCCChH-----------------HHHHHHHHHHHHHHHHccCCCCCEE
Confidence 4789999999 555566777789999999999999621 2233333333333321 23459999
Q ss_pred EEecccc
Q 042025 726 LILNKYD 732 (844)
Q Consensus 726 LfLNK~D 732 (844)
|+.||.|
T Consensus 113 lv~nK~D 119 (119)
T PF08477_consen 113 LVGNKSD 119 (119)
T ss_dssp EEEE-TC
T ss_pred EEEeccC
Confidence 9999998
No 183
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=97.14 E-value=0.001 Score=75.45 Aligned_cols=117 Identities=10% Similarity=0.067 Sum_probs=73.1
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcEE
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFV 725 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpiI 725 (844)
..+.+||+.|+ ....+.|......+|++|+|||.++=. . .....+.+.+++ .+...+++
T Consensus 80 ~~i~liDtPGh-~~f~~~~~~g~~~aD~aIlVVDa~~g~--~------------~~qt~e~l~~l~------~~gi~~iI 138 (406)
T TIGR03680 80 RRVSFVDAPGH-ETLMATMLSGAALMDGALLVIAANEPC--P------------QPQTKEHLMALE------IIGIKNIV 138 (406)
T ss_pred cEEEEEECCCH-HHHHHHHHHHHHHCCEEEEEEECCCCc--c------------ccchHHHHHHHH------HcCCCeEE
Confidence 57899999999 777778888778899999999988410 0 111112222221 12234799
Q ss_pred EEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHHHHH
Q 042025 726 LILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVDEAF 805 (844)
Q Consensus 726 LfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~evF 805 (844)
+++||+|+..+. .+. ...+++.+++. .. ....+.+..+||++++++++.+
T Consensus 139 VvvNK~Dl~~~~----~~~------------------~~~~~i~~~l~----~~----~~~~~~ii~vSA~~g~gi~~L~ 188 (406)
T TIGR03680 139 IVQNKIDLVSKE----KAL------------------ENYEEIKEFVK----GT----VAENAPIIPVSALHNANIDALL 188 (406)
T ss_pred EEEEccccCCHH----HHH------------------HHHHHHHhhhh----hc----ccCCCeEEEEECCCCCChHHHH
Confidence 999999986420 000 00112222221 11 0124568899999999999999
Q ss_pred HHHHHHHh
Q 042025 806 KYIREVLK 813 (844)
Q Consensus 806 ~~V~e~Ik 813 (844)
+++...+.
T Consensus 189 e~L~~~l~ 196 (406)
T TIGR03680 189 EAIEKFIP 196 (406)
T ss_pred HHHHHhCC
Confidence 99987653
No 184
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.10 E-value=0.0013 Score=65.67 Aligned_cols=121 Identities=12% Similarity=0.166 Sum_probs=91.5
Q ss_pred CceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcE
Q 042025 645 LTKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPF 724 (844)
Q Consensus 645 ~~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpi 724 (844)
.+++++||..|| ...|..=..||..++|+|.|-|+|- .+ .-..|.|=+...++-.|++.+ -
T Consensus 55 kiklqiwdtagq-erfrsitqsyyrsahalilvydisc-------qp-------sfdclpewlreie~yan~kvl----k 115 (213)
T KOG0095|consen 55 KIKLQIWDTAGQ-ERFRSITQSYYRSAHALILVYDISC-------QP-------SFDCLPEWLREIEQYANNKVL----K 115 (213)
T ss_pred EEEEEEeeccch-HHHHHHHHHHhhhcceEEEEEeccc-------Cc-------chhhhHHHHHHHHHHhhcceE----E
Confidence 589999999999 7777777789999999999988883 22 267888889999999998765 5
Q ss_pred EEEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHHHH
Q 042025 725 VLILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVDEA 804 (844)
Q Consensus 725 ILfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~ev 804 (844)
||+.||.|+-.++ .+| + -|...|.+. ...|..-|+|.+.++|+..
T Consensus 116 ilvgnk~d~~drr--evp-----------------------~----qigeefs~~------qdmyfletsakea~nve~l 160 (213)
T KOG0095|consen 116 ILVGNKIDLADRR--EVP-----------------------Q----QIGEEFSEA------QDMYFLETSAKEADNVEKL 160 (213)
T ss_pred Eeeccccchhhhh--hhh-----------------------H----HHHHHHHHh------hhhhhhhhcccchhhHHHH
Confidence 8899999987652 111 1 133345433 2467788999999999999
Q ss_pred HHHHHHHHhhhhhcc
Q 042025 805 FKYIREVLKWDDEKE 819 (844)
Q Consensus 805 F~~V~e~Ik~~~~k~ 819 (844)
|..+.--+..+....
T Consensus 161 f~~~a~rli~~ar~~ 175 (213)
T KOG0095|consen 161 FLDLACRLISEARQN 175 (213)
T ss_pred HHHHHHHHHHHHHhc
Confidence 998876665555443
No 185
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=97.04 E-value=0.00094 Score=76.01 Aligned_cols=115 Identities=11% Similarity=0.007 Sum_probs=62.5
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcEE
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFV 725 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpiI 725 (844)
..+.+||+.|+ ....+.-...+.++|++|+|||.++=+.. . .....+-+. ++. .+...++|
T Consensus 85 ~~i~iiDtpGh-~~f~~~~~~~~~~aD~~ilVvDa~~~~~~----~--------~~~t~~~~~----~~~--~~~~~~iI 145 (426)
T TIGR00483 85 YEVTIVDCPGH-RDFIKNMITGASQADAAVLVVAVGDGEFE----V--------QPQTREHAF----LAR--TLGINQLI 145 (426)
T ss_pred eEEEEEECCCH-HHHHHHHHhhhhhCCEEEEEEECCCCCcc----c--------CCchHHHHH----HHH--HcCCCeEE
Confidence 57999999999 43322233345689999999999852100 0 011111111 111 12235799
Q ss_pred EEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHHHHH
Q 042025 726 LILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVDEAF 805 (844)
Q Consensus 726 LfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~evF 805 (844)
|++||+|+.... . ...+...+-+...++.+. .....+.+..+||.++.||.+.+
T Consensus 146 VviNK~Dl~~~~----~--------------------~~~~~~~~ei~~~~~~~g--~~~~~~~~i~iSA~~g~ni~~~~ 199 (426)
T TIGR00483 146 VAINKMDSVNYD----E--------------------EEFEAIKKEVSNLIKKVG--YNPDTVPFIPISAWNGDNVIKKS 199 (426)
T ss_pred EEEEChhccCcc----H--------------------HHHHHHHHHHHHHHHHcC--CCcccceEEEeeccccccccccc
Confidence 999999985310 0 001111122222111111 12345778999999999998644
No 186
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.03 E-value=0.00063 Score=71.37 Aligned_cols=75 Identities=19% Similarity=0.318 Sum_probs=56.6
Q ss_pred eEEEEEeCCCCCCCcccceeccC---CccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCC-CCCC
Q 042025 647 KYQLIRVNAKGMNEGCKWVEMFE---DVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPC-FKDT 722 (844)
Q Consensus 647 ~~~liDVGGQ~rseR~KW~~~Fe---dV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~-f~~t 722 (844)
..+++|+.|+ ..-|.|-..+|. .+.+||||||...|+.-. =.-|.-||.-+.++.. -...
T Consensus 83 ~~~LVD~PGH-~rlR~kl~e~~~~~~~akaiVFVVDSa~f~k~v---------------rdvaefLydil~~~~~~~~~~ 146 (238)
T KOG0090|consen 83 NVTLVDLPGH-SRLRRKLLEYLKHNYSAKAIVFVVDSATFLKNV---------------RDVAEFLYDILLDSRVKKNKP 146 (238)
T ss_pred ceEEEeCCCc-HHHHHHHHHHccccccceeEEEEEeccccchhh---------------HHHHHHHHHHHHhhccccCCC
Confidence 4789999999 788889899998 799999999999765433 2234445555555543 3457
Q ss_pred cEEEEecccchhhhh
Q 042025 723 PFVLILNKYDLFEEK 737 (844)
Q Consensus 723 piILfLNK~DLfeeK 737 (844)
||+|..||+|+|-+|
T Consensus 147 ~vLIaCNKqDl~tAk 161 (238)
T KOG0090|consen 147 PVLIACNKQDLFTAK 161 (238)
T ss_pred CEEEEecchhhhhcC
Confidence 899999999999654
No 187
>PRK00093 GTP-binding protein Der; Reviewed
Probab=97.02 E-value=0.0015 Score=73.99 Aligned_cols=104 Identities=21% Similarity=0.226 Sum_probs=64.0
Q ss_pred ceEEEEEeCCCCCC--------CcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCC
Q 042025 646 TKYQLIRVNAKGMN--------EGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHP 717 (844)
Q Consensus 646 ~~~~liDVGGQ~rs--------eR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p 717 (844)
..+.+||++|+ .. .+..+..++.++|+||||||.++-. .... ..+ ..++..
T Consensus 49 ~~~~liDT~G~-~~~~~~~~~~~~~~~~~~~~~ad~il~vvd~~~~~----------------~~~~--~~~-~~~l~~- 107 (435)
T PRK00093 49 REFILIDTGGI-EPDDDGFEKQIREQAELAIEEADVILFVVDGRAGL----------------TPAD--EEI-AKILRK- 107 (435)
T ss_pred cEEEEEECCCC-CCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCC----------------CHHH--HHH-HHHHHH-
Confidence 47899999999 43 2334556788999999999987410 0011 111 112221
Q ss_pred CCCCCcEEEEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecC
Q 042025 718 CFKDTPFVLILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARD 797 (844)
Q Consensus 718 ~f~~tpiILfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtD 797 (844)
.+.|+||++||+|+... ...+.+ |..+. . . .++.+||.+
T Consensus 108 --~~~piilv~NK~D~~~~----------------------------~~~~~~-----~~~lg--~--~--~~~~iSa~~ 146 (435)
T PRK00093 108 --SNKPVILVVNKVDGPDE----------------------------EADAYE-----FYSLG--L--G--EPYPISAEH 146 (435)
T ss_pred --cCCcEEEEEECccCccc----------------------------hhhHHH-----HHhcC--C--C--CCEEEEeeC
Confidence 16899999999995321 011111 11221 0 1 146789999
Q ss_pred CCCHHHHHHHHHHH
Q 042025 798 RVTVDEAFKYIREV 811 (844)
Q Consensus 798 te~I~evF~~V~e~ 811 (844)
+.++.+.|+++.+.
T Consensus 147 g~gv~~l~~~I~~~ 160 (435)
T PRK00093 147 GRGIGDLLDAILEE 160 (435)
T ss_pred CCCHHHHHHHHHhh
Confidence 99999999988873
No 188
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=97.01 E-value=0.0021 Score=64.64 Aligned_cols=100 Identities=19% Similarity=0.183 Sum_probs=62.7
Q ss_pred cccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcEEEEecccchhhhhhhc
Q 042025 661 GCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFVLILNKYDLFEEKVNR 740 (844)
Q Consensus 661 R~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpiILfLNK~DLfeeKI~~ 740 (844)
+..|..+++++++||||+|+++++..+ ...+ .. ...+.|+||++||.|+..+.
T Consensus 25 ~~~l~~~~~~ad~il~VvD~~~~~~~~------------~~~l-------~~-----~~~~~~~ilV~NK~Dl~~~~--- 77 (190)
T cd01855 25 LNLLSSISPKKALVVHVVDIFDFPGSL------------IPRL-------RL-----FGGNNPVILVGNKIDLLPKD--- 77 (190)
T ss_pred HHHHHhcccCCcEEEEEEECccCCCcc------------chhH-------HH-----hcCCCcEEEEEEchhcCCCC---
Confidence 678889999999999999999754222 1111 11 12467999999999986321
Q ss_pred cccccccccCCCCCCcCCCCChhhHHHHHHHHH-HHHHhhhccCCCCcEEEEEEeecCCCCHHHHHHHHHHHHh
Q 042025 741 VHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVA-MKFKDLYASLTGRKLFVWQARARDRVTVDEAFKYIREVLK 813 (844)
Q Consensus 741 spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~-~KFl~L~~s~~~Rklyvh~T~AtDte~I~evF~~V~e~Ik 813 (844)
. . .+....|.. ..+.... . ....++++||.++.++++.++++.+.+.
T Consensus 78 --~-----------------~---~~~~~~~~~~~~~~~~~--~--~~~~i~~vSA~~~~gi~eL~~~l~~~l~ 125 (190)
T cd01855 78 --K-----------------N---LVRIKNWLRAKAAAGLG--L--KPKDVILISAKKGWGVEELINAIKKLAK 125 (190)
T ss_pred --C-----------------C---HHHHHHHHHHHHHhhcC--C--CcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence 0 0 112222221 0111110 0 1123788999999999999999998764
No 189
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=96.93 E-value=0.0013 Score=79.90 Aligned_cols=107 Identities=21% Similarity=0.196 Sum_probs=67.4
Q ss_pred ceEEEEEeCCCCCCC--------cccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCC
Q 042025 646 TKYQLIRVNAKGMNE--------GCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHP 717 (844)
Q Consensus 646 ~~~~liDVGGQ~rse--------R~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p 717 (844)
..|++||++|+ ... +..+..+++.+|+||||+|.++- + .-..+ .+.+. +..
T Consensus 323 ~~~~liDT~G~-~~~~~~~~~~~~~~~~~~~~~aD~iL~VvDa~~~---~-------------~~~d~--~i~~~-Lr~- 381 (712)
T PRK09518 323 TDFKLVDTGGW-EADVEGIDSAIASQAQIAVSLADAVVFVVDGQVG---L-------------TSTDE--RIVRM-LRR- 381 (712)
T ss_pred EEEEEEeCCCc-CCCCccHHHHHHHHHHHHHHhCCEEEEEEECCCC---C-------------CHHHH--HHHHH-HHh-
Confidence 57999999998 321 23344567899999999998740 0 00111 11121 221
Q ss_pred CCCCCcEEEEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecC
Q 042025 718 CFKDTPFVLILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARD 797 (844)
Q Consensus 718 ~f~~tpiILfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtD 797 (844)
.+.|+||++||.|+.... ..+.+ |..+. . +. ++++||.+
T Consensus 382 --~~~pvIlV~NK~D~~~~~----------------------------~~~~~-----~~~lg--~-~~---~~~iSA~~ 420 (712)
T PRK09518 382 --AGKPVVLAVNKIDDQASE----------------------------YDAAE-----FWKLG--L-GE---PYPISAMH 420 (712)
T ss_pred --cCCCEEEEEECcccccch----------------------------hhHHH-----HHHcC--C-CC---eEEEECCC
Confidence 478999999999975310 00111 22221 1 11 35799999
Q ss_pred CCCHHHHHHHHHHHHhh
Q 042025 798 RVTVDEAFKYIREVLKW 814 (844)
Q Consensus 798 te~I~evF~~V~e~Ik~ 814 (844)
+.||.+.|++|.+.+..
T Consensus 421 g~GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 421 GRGVGDLLDEALDSLKV 437 (712)
T ss_pred CCCchHHHHHHHHhccc
Confidence 99999999999998854
No 190
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.93 E-value=0.0042 Score=64.23 Aligned_cols=119 Identities=16% Similarity=0.141 Sum_probs=79.2
Q ss_pred CceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcE
Q 042025 645 LTKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPF 724 (844)
Q Consensus 645 ~~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpi 724 (844)
.+++++||++|| .+.|..-..||.++.+.|.|-|+.. .| .-|.|..=+. .+-.+ .-.|+.|
T Consensus 54 ~IKlqiwDtaGq-e~frsv~~syYr~a~GalLVydit~-------r~-------sF~hL~~wL~---D~rq~-~~~NmvI 114 (216)
T KOG0098|consen 54 QIKLQIWDTAGQ-ESFRSVTRSYYRGAAGALLVYDITR-------RE-------SFNHLTSWLE---DARQH-SNENMVI 114 (216)
T ss_pred eEEEEEEecCCc-HHHHHHHHHHhccCcceEEEEEccc-------hh-------hHHHHHHHHH---HHHHh-cCCCcEE
Confidence 589999999999 8888888899999999999988874 21 1333332222 22222 1357899
Q ss_pred EEEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHHHH
Q 042025 725 VLILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVDEA 804 (844)
Q Consensus 725 ILfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~ev 804 (844)
+|+.||.||-..+ -.+ -++...|-++ . --+|. -|||..+++|.++
T Consensus 115 mLiGNKsDL~~rR----~Vs--------------------~EEGeaFA~e-----h-----gLifm-ETSakt~~~VEEa 159 (216)
T KOG0098|consen 115 MLIGNKSDLEARR----EVS--------------------KEEGEAFARE-----H-----GLIFM-ETSAKTAENVEEA 159 (216)
T ss_pred EEEcchhhhhccc----ccc--------------------HHHHHHHHHH-----c-----Cceee-hhhhhhhhhHHHH
Confidence 9999999996542 111 1222222211 1 12333 8999999999999
Q ss_pred HHHHHHHHhhhhh
Q 042025 805 FKYIREVLKWDDE 817 (844)
Q Consensus 805 F~~V~e~Ik~~~~ 817 (844)
|...-..|.....
T Consensus 160 F~nta~~Iy~~~q 172 (216)
T KOG0098|consen 160 FINTAKEIYRKIQ 172 (216)
T ss_pred HHHHHHHHHHHHH
Confidence 9987766655443
No 191
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=96.92 E-value=0.0043 Score=58.37 Aligned_cols=99 Identities=21% Similarity=0.242 Sum_probs=64.5
Q ss_pred ceEEEEEeCCCCCCCc---------ccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcC
Q 042025 646 TKYQLIRVNAKGMNEG---------CKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRH 716 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR---------~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~ 716 (844)
.++.+||+.|. .... +.| .++..++++++|+|.++-. .. .+ ..++..
T Consensus 49 ~~~~i~DtpG~-~~~~~~~~~~~~~~~~-~~~~~~~~~v~v~d~~~~~-------~~------~~-----~~~~~~---- 104 (157)
T cd04164 49 IPVRLIDTAGI-RETEDEIEKIGIERAR-EAIEEADLVLFVIDASRGL-------DE------ED-----LEILEL---- 104 (157)
T ss_pred EEEEEEECCCc-CCCcchHHHHHHHHHH-HHHhhCCEEEEEEECCCCC-------CH------HH-----HHHHHh----
Confidence 46889999997 2221 112 3567899999999998511 10 11 122222
Q ss_pred CCCCCCcEEEEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeec
Q 042025 717 PCFKDTPFVLILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARAR 796 (844)
Q Consensus 717 p~f~~tpiILfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~At 796 (844)
..+.|+++++||.|+..+.. . .. ......+..+||.
T Consensus 105 --~~~~~vi~v~nK~D~~~~~~--------------------------~-------------~~---~~~~~~~~~~Sa~ 140 (157)
T cd04164 105 --PADKPIIVVLNKSDLLPDSE--------------------------L-------------LS---LLAGKPIIAISAK 140 (157)
T ss_pred --hcCCCEEEEEEchhcCCccc--------------------------c-------------cc---ccCCCceEEEECC
Confidence 44689999999999865310 0 00 0112346789999
Q ss_pred CCCCHHHHHHHHHHHH
Q 042025 797 DRVTVDEAFKYIREVL 812 (844)
Q Consensus 797 Dte~I~evF~~V~e~I 812 (844)
++.++++.++++.+.+
T Consensus 141 ~~~~v~~l~~~l~~~~ 156 (157)
T cd04164 141 TGEGLDELKEALLELA 156 (157)
T ss_pred CCCCHHHHHHHHHHhh
Confidence 9999999999998865
No 192
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=96.92 E-value=0.0088 Score=60.35 Aligned_cols=118 Identities=18% Similarity=0.285 Sum_probs=71.4
Q ss_pred CceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCc-
Q 042025 645 LTKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTP- 723 (844)
Q Consensus 645 ~~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tp- 723 (844)
.+.|.+||+||| +..+..-.-...|.-+|+|+.||+. .. +.|.+ ++.+.. .+-+.++.
T Consensus 68 ~IsfSIwdlgG~-~~~~n~lPiac~dsvaIlFmFDLt~-------r~-------TLnSi---~~WY~Q---Ar~~NktAi 126 (205)
T KOG1673|consen 68 DISFSIWDLGGQ-REFINMLPIACKDSVAILFMFDLTR-------RS-------TLNSI---KEWYRQ---ARGLNKTAI 126 (205)
T ss_pred EEEEEEEecCCc-HhhhccCceeecCcEEEEEEEecCc-------hH-------HHHHH---HHHHHH---HhccCCccc
Confidence 478999999999 5444444444568889999999984 10 12322 222222 22344444
Q ss_pred EEEEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHHH
Q 042025 724 FVLILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVDE 803 (844)
Q Consensus 724 iILfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~e 803 (844)
-||+.+|+|+|-. |- |++. ..-..+|..|- ...+. . .+||++...-||+.
T Consensus 127 PilvGTKyD~fi~------lp-----~e~Q--------~~I~~qar~YA-----k~mnA----s--L~F~Sts~sINv~K 176 (205)
T KOG1673|consen 127 PILVGTKYDLFID------LP-----PELQ--------ETISRQARKYA-----KVMNA----S--LFFCSTSHSINVQK 176 (205)
T ss_pred eEEeccchHhhhc------CC-----HHHH--------HHHHHHHHHHH-----HHhCC----c--EEEeeccccccHHH
Confidence 4788899999964 21 1221 01133444433 32221 2 57889999999999
Q ss_pred HHHHHHHHHh
Q 042025 804 AFKYIREVLK 813 (844)
Q Consensus 804 vF~~V~e~Ik 813 (844)
.|+.+..-+.
T Consensus 177 IFK~vlAklF 186 (205)
T KOG1673|consen 177 IFKIVLAKLF 186 (205)
T ss_pred HHHHHHHHHh
Confidence 9999887654
No 193
>PRK00089 era GTPase Era; Reviewed
Probab=96.92 E-value=0.0066 Score=65.28 Aligned_cols=111 Identities=20% Similarity=0.218 Sum_probs=67.1
Q ss_pred ceEEEEEeCCCCCCCcc--------cceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCC
Q 042025 646 TKYQLIRVNAKGMNEGC--------KWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHP 717 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~--------KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p 717 (844)
..+.++|+.|. ...+. .+...+.++|+|+||+|.++ .+ .... ..+++.+.+
T Consensus 53 ~qi~~iDTPG~-~~~~~~l~~~~~~~~~~~~~~~D~il~vvd~~~---~~------------~~~~---~~i~~~l~~-- 111 (292)
T PRK00089 53 AQIIFVDTPGI-HKPKRALNRAMNKAAWSSLKDVDLVLFVVDADE---KI------------GPGD---EFILEKLKK-- 111 (292)
T ss_pred ceEEEEECCCC-CCchhHHHHHHHHHHHHHHhcCCEEEEEEeCCC---CC------------ChhH---HHHHHHHhh--
Confidence 46889999997 33222 22336789999999999885 11 1111 122222221
Q ss_pred CCCCCcEEEEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecC
Q 042025 718 CFKDTPFVLILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARD 797 (844)
Q Consensus 718 ~f~~tpiILfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtD 797 (844)
.+.|++|++||.|+...+- . ..... ..+.+.. ....++.+||.+
T Consensus 112 --~~~pvilVlNKiDl~~~~~------------------------~-l~~~~----~~l~~~~-----~~~~i~~iSA~~ 155 (292)
T PRK00089 112 --VKTPVILVLNKIDLVKDKE------------------------E-LLPLL----EELSELM-----DFAEIVPISALK 155 (292)
T ss_pred --cCCCEEEEEECCcCCCCHH------------------------H-HHHHH----HHHHhhC-----CCCeEEEecCCC
Confidence 2589999999999963210 0 01111 1122211 123477889999
Q ss_pred CCCHHHHHHHHHHHHh
Q 042025 798 RVTVDEAFKYIREVLK 813 (844)
Q Consensus 798 te~I~evF~~V~e~Ik 813 (844)
+.++++.++++.+.+.
T Consensus 156 ~~gv~~L~~~L~~~l~ 171 (292)
T PRK00089 156 GDNVDELLDVIAKYLP 171 (292)
T ss_pred CCCHHHHHHHHHHhCC
Confidence 9999999999988763
No 194
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.91 E-value=0.0054 Score=61.96 Aligned_cols=121 Identities=19% Similarity=0.232 Sum_probs=86.4
Q ss_pred CceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcE
Q 042025 645 LTKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPF 724 (844)
Q Consensus 645 ~~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpi 724 (844)
.+.+++||..|| ...|..=-.+|.|+-+.|.+.||+. ...+.+.+..+..+-.|-.-.+..|
T Consensus 66 rihLQlWDTAGQ-ERFRSLTTAFfRDAMGFlLiFDlT~-----------------eqSFLnvrnWlSQL~~hAYcE~PDi 127 (219)
T KOG0081|consen 66 RIHLQLWDTAGQ-ERFRSLTTAFFRDAMGFLLIFDLTS-----------------EQSFLNVRNWLSQLQTHAYCENPDI 127 (219)
T ss_pred EEEEeeeccccH-HHHHHHHHHHHHhhccceEEEeccc-----------------hHHHHHHHHHHHHHHHhhccCCCCE
Confidence 578999999999 7777777779999999999999884 1223344555566666666677789
Q ss_pred EEEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHHHH
Q 042025 725 VLILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVDEA 804 (844)
Q Consensus 725 ILfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~ev 804 (844)
+|.-||.||...+. .+ .++|+. +..|| .+=.+-|+|-++.||.++
T Consensus 128 vlcGNK~DL~~~R~----Vs--------------------~~qa~~-La~ky----------glPYfETSA~tg~Nv~ka 172 (219)
T KOG0081|consen 128 VLCGNKADLEDQRV----VS--------------------EDQAAA-LADKY----------GLPYFETSACTGTNVEKA 172 (219)
T ss_pred EEEcCccchhhhhh----hh--------------------HHHHHH-HHHHh----------CCCeeeeccccCcCHHHH
Confidence 99999999987532 11 123322 33332 122567899999999999
Q ss_pred HHHHHHHHhhhhhc
Q 042025 805 FKYIREVLKWDDEK 818 (844)
Q Consensus 805 F~~V~e~Ik~~~~k 818 (844)
.+-+.+.|..+-++
T Consensus 173 ve~LldlvM~Rie~ 186 (219)
T KOG0081|consen 173 VELLLDLVMKRIEQ 186 (219)
T ss_pred HHHHHHHHHHHHHH
Confidence 99888877666554
No 195
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=96.87 E-value=0.0071 Score=62.43 Aligned_cols=126 Identities=17% Similarity=0.219 Sum_probs=78.3
Q ss_pred CceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcE
Q 042025 645 LTKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPF 724 (844)
Q Consensus 645 ~~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpi 724 (844)
...++|||.+|| ...+..-..+|.++|..+-|-|+.+ .++ -.-|.-=++.|-.-.+-..-..-||
T Consensus 57 ~vtlQiWDTAGQ-ERFqsLg~aFYRgaDcCvlvydv~~-------~~S-------fe~L~~Wr~EFl~qa~~~~Pe~FPF 121 (210)
T KOG0394|consen 57 SVTLQIWDTAGQ-ERFQSLGVAFYRGADCCVLVYDVNN-------PKS-------FENLENWRKEFLIQASPQDPETFPF 121 (210)
T ss_pred EEEEEEEecccH-HHhhhcccceecCCceEEEEeecCC-------hhh-------hccHHHHHHHHHHhcCCCCCCcccE
Confidence 357999999999 6777777778999999888766654 111 0111111122211111112234699
Q ss_pred EEEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHHHH
Q 042025 725 VLILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVDEA 804 (844)
Q Consensus 725 ILfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~ev 804 (844)
||+.||+|+-..|-..+. -+.|..|-+. ++.+-.+-|||.+..||.++
T Consensus 122 VilGNKiD~~~~~~r~VS----------------------~~~Aq~WC~s----------~gnipyfEtSAK~~~NV~~A 169 (210)
T KOG0394|consen 122 VILGNKIDVDGGKSRQVS----------------------EKKAQTWCKS----------KGNIPYFETSAKEATNVDEA 169 (210)
T ss_pred EEEcccccCCCCccceee----------------------HHHHHHHHHh----------cCCceeEEecccccccHHHH
Confidence 999999999774311111 2345444432 24555677999999999999
Q ss_pred HHHHHHHHhhhhh
Q 042025 805 FKYIREVLKWDDE 817 (844)
Q Consensus 805 F~~V~e~Ik~~~~ 817 (844)
|..+....+..+.
T Consensus 170 Fe~ia~~aL~~E~ 182 (210)
T KOG0394|consen 170 FEEIARRALANED 182 (210)
T ss_pred HHHHHHHHHhccc
Confidence 9877766655554
No 196
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=96.79 E-value=0.0055 Score=70.71 Aligned_cols=64 Identities=25% Similarity=0.383 Sum_probs=43.1
Q ss_pred ceEEEEEeCCCCCCCc---------ccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcC
Q 042025 646 TKYQLIRVNAKGMNEG---------CKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRH 716 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR---------~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~ 716 (844)
.++++||+.|+ +... +-| .++.++|++|||+|.++... . +...++..
T Consensus 263 ~~i~l~DT~G~-~~~~~~ie~~gi~~~~-~~~~~aD~il~VvD~s~~~s--------------~----~~~~~l~~---- 318 (449)
T PRK05291 263 IPLRLIDTAGI-RETDDEVEKIGIERSR-EAIEEADLVLLVLDASEPLT--------------E----EDDEILEE---- 318 (449)
T ss_pred eEEEEEeCCCC-CCCccHHHHHHHHHHH-HHHHhCCEEEEEecCCCCCC--------------h----hHHHHHHh----
Confidence 46899999998 4321 122 36788999999999985211 0 11233332
Q ss_pred CCCCCCcEEEEecccchhh
Q 042025 717 PCFKDTPFVLILNKYDLFE 735 (844)
Q Consensus 717 p~f~~tpiILfLNK~DLfe 735 (844)
..+.|+++++||.|+..
T Consensus 319 --~~~~piiiV~NK~DL~~ 335 (449)
T PRK05291 319 --LKDKPVIVVLNKADLTG 335 (449)
T ss_pred --cCCCCcEEEEEhhhccc
Confidence 45789999999999854
No 197
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=96.71 E-value=0.014 Score=58.91 Aligned_cols=143 Identities=23% Similarity=0.263 Sum_probs=96.6
Q ss_pred CCCCCCccceeEeeccccCCceEEEEEEecCCCCCCccccCcccCCCCCCceEEEEEeCCCCCCC-cccceeccCCccEE
Q 042025 596 NEYEPSDRDILYAEGVTQGNGLAFIEFSLDDRSPMSETYTDNLEVQPQPLTKYQLIRVNAKGMNE-GCKWVEMFEDVRVV 674 (844)
Q Consensus 596 ~dY~PTd~DILraR~~TtG~GI~e~eF~~~~~~~~~~~~~~~~~~~~~~~~~~~liDVGGQ~rse-R~KW~~~FedV~aI 674 (844)
.+|.||.+||..+-+-|-- |. .-.++++|..|- +.. -..=.|||+-.|+.
T Consensus 38 ~e~~pTiEDiY~~svet~r-ga---------------------------rE~l~lyDTaGl-q~~~~eLprhy~q~aDaf 88 (198)
T KOG3883|consen 38 TELHPTIEDIYVASVETDR-GA---------------------------REQLRLYDTAGL-QGGQQELPRHYFQFADAF 88 (198)
T ss_pred CccccchhhheeEeeecCC-Ch---------------------------hheEEEeecccc-cCchhhhhHhHhccCceE
Confidence 4788999999887665532 21 125788999776 333 34556899999999
Q ss_pred EEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcEEEEecccchhhhhhhccccccccccCCCCC
Q 042025 675 VFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFVLILNKYDLFEEKVNRVHLSTCEWFNDFSP 754 (844)
Q Consensus 675 IFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpiILfLNK~DLfeeKI~~spLs~c~~FPDF~g 754 (844)
+.|-|..| .| ..||+..-+...+. ++.-+..||+++.||.|+-+. -+.
T Consensus 89 VLVYs~~d-------~e-------Sf~rv~llKk~Idk---~KdKKEvpiVVLaN~rdr~~p------~~v--------- 136 (198)
T KOG3883|consen 89 VLVYSPMD-------PE-------SFQRVELLKKEIDK---HKDKKEVPIVVLANKRDRAEP------REV--------- 136 (198)
T ss_pred EEEecCCC-------HH-------HHHHHHHHHHHHhh---ccccccccEEEEechhhcccc------hhc---------
Confidence 99877765 23 25676655554444 667778999999999998642 211
Q ss_pred CcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHHHHHHHHHHHHhhhhhcc
Q 042025 755 VRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVDEAFKYIREVLKWDDEKE 819 (844)
Q Consensus 755 ~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~evF~~V~e~Ik~~~~k~ 819 (844)
+ .+-|..|-+ .-++-.+-++|.|...+-+-|.++..-+..-..|.
T Consensus 137 -------d--~d~A~~Wa~-----------rEkvkl~eVta~dR~sL~epf~~l~~rl~~pqskS 181 (198)
T KOG3883|consen 137 -------D--MDVAQIWAK-----------REKVKLWEVTAMDRPSLYEPFTYLASRLHQPQSKS 181 (198)
T ss_pred -------C--HHHHHHHHh-----------hhheeEEEEEeccchhhhhHHHHHHHhccCCcccc
Confidence 1 122222211 13566788899999999999999987765555444
No 198
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=96.71 E-value=0.0046 Score=61.40 Aligned_cols=26 Identities=19% Similarity=-0.009 Sum_probs=22.3
Q ss_pred EEEEEEeecCCCCHHHHHHHHHHHHh
Q 042025 788 LFVWQARARDRVTVDEAFKYIREVLK 813 (844)
Q Consensus 788 lyvh~T~AtDte~I~evF~~V~e~Ik 813 (844)
+-+..++|+++.+++++|+++.+.++
T Consensus 169 ~~~~~~Sa~~~~gi~~l~~~i~~~~~ 194 (196)
T PRK00454 169 DEVILFSSLKKQGIDELRAAIAKWLA 194 (196)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHhc
Confidence 34668999999999999999988765
No 199
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=96.69 E-value=0.0096 Score=71.06 Aligned_cols=106 Identities=17% Similarity=0.165 Sum_probs=67.7
Q ss_pred ceEEEEEeCCCCCCCccc------ceecc--CCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCC
Q 042025 646 TKYQLIRVNAKGMNEGCK------WVEMF--EDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHP 717 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~K------W~~~F--edV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p 717 (844)
.++++||+.|+ .+.+.. +.+++ +++|+||+|+|.++.++ .+.+...+..
T Consensus 41 ~~i~lvDtPG~-~~~~~~s~~e~v~~~~l~~~~aDvvI~VvDat~ler--------------------~l~l~~ql~~-- 97 (591)
T TIGR00437 41 EDIEIVDLPGI-YSLTTFSLEEEVARDYLLNEKPDLVVNVVDASNLER--------------------NLYLTLQLLE-- 97 (591)
T ss_pred eEEEEEECCCc-cccCccchHHHHHHHHHhhcCCCEEEEEecCCcchh--------------------hHHHHHHHHh--
Confidence 46899999999 444332 44443 47899999999885211 1233333333
Q ss_pred CCCCCcEEEEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecC
Q 042025 718 CFKDTPFVLILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARD 797 (844)
Q Consensus 718 ~f~~tpiILfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtD 797 (844)
.+.|+++++||.|+.+++ .+. .+ .+-+.++ + .+.+..|||++
T Consensus 98 --~~~PiIIVlNK~Dl~~~~----~i~---------------------~d-~~~L~~~---l-------g~pvv~tSA~t 139 (591)
T TIGR00437 98 --LGIPMILALNLVDEAEKK----GIR---------------------ID-EEKLEER---L-------GVPVVPTSATE 139 (591)
T ss_pred --cCCCEEEEEehhHHHHhC----CCh---------------------hh-HHHHHHH---c-------CCCEEEEECCC
Confidence 268999999999986531 111 00 0111111 1 13478899999
Q ss_pred CCCHHHHHHHHHHHH
Q 042025 798 RVTVDEAFKYIREVL 812 (844)
Q Consensus 798 te~I~evF~~V~e~I 812 (844)
++|+++.|+++.+..
T Consensus 140 g~Gi~eL~~~i~~~~ 154 (591)
T TIGR00437 140 GRGIERLKDAIRKAI 154 (591)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999998754
No 200
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=96.65 E-value=0.0092 Score=71.55 Aligned_cols=116 Identities=15% Similarity=0.152 Sum_probs=68.3
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCc-E
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTP-F 724 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tp-i 724 (844)
..+.+||+.|+ ...-+.-...+.++|++|+|||..+ | -+.++++.+. ++.. + +.+ +
T Consensus 51 ~~i~~IDtPGh-e~fi~~m~~g~~~~D~~lLVVda~e-----------g-------~~~qT~ehl~-il~~--l-gi~~i 107 (614)
T PRK10512 51 RVLGFIDVPGH-EKFLSNMLAGVGGIDHALLVVACDD-----------G-------VMAQTREHLA-ILQL--T-GNPML 107 (614)
T ss_pred cEEEEEECCCH-HHHHHHHHHHhhcCCEEEEEEECCC-----------C-------CcHHHHHHHH-HHHH--c-CCCeE
Confidence 46899999999 4332323345678999999999763 1 1123333333 2221 1 344 6
Q ss_pred EEEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHHHH
Q 042025 725 VLILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVDEA 804 (844)
Q Consensus 725 ILfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~ev 804 (844)
||++||+|+..+. + .+...+-|.+.+.... -..+-+..+||.+++||++.
T Consensus 108 IVVlNKiDlv~~~----------~----------------~~~v~~ei~~~l~~~~----~~~~~ii~VSA~tG~gI~~L 157 (614)
T PRK10512 108 TVALTKADRVDEA----------R----------------IAEVRRQVKAVLREYG----FAEAKLFVTAATEGRGIDAL 157 (614)
T ss_pred EEEEECCccCCHH----------H----------------HHHHHHHHHHHHHhcC----CCCCcEEEEeCCCCCCCHHH
Confidence 8999999985420 0 1111111222222111 11234788999999999999
Q ss_pred HHHHHHHHhh
Q 042025 805 FKYIREVLKW 814 (844)
Q Consensus 805 F~~V~e~Ik~ 814 (844)
+++|.+....
T Consensus 158 ~~~L~~~~~~ 167 (614)
T PRK10512 158 REHLLQLPER 167 (614)
T ss_pred HHHHHHhhcc
Confidence 9999876544
No 201
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=96.61 E-value=0.0033 Score=66.48 Aligned_cols=140 Identities=16% Similarity=0.229 Sum_probs=81.8
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcEE
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFV 725 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpiI 725 (844)
.++.+||+.|+ ......|..++..++++|+|+|.++=. . .....+++.+-. .+.|++
T Consensus 64 ~~i~liDTPG~-~~f~~~~~~~l~~aD~~IlVvd~~~g~---------------~---~~~~~~~~~~~~----~~~P~i 120 (237)
T cd04168 64 TKVNLIDTPGH-MDFIAEVERSLSVLDGAILVISAVEGV---------------Q---AQTRILWRLLRK----LNIPTI 120 (237)
T ss_pred EEEEEEeCCCc-cchHHHHHHHHHHhCeEEEEEeCCCCC---------------C---HHHHHHHHHHHH----cCCCEE
Confidence 58999999999 666777888999999999999987510 1 123334443322 268999
Q ss_pred EEecccchhhhh-----------hhc--cccccccccCCCCCCcCCC--CChhhHHHHH---HHHHHHHHhh--------
Q 042025 726 LILNKYDLFEEK-----------VNR--VHLSTCEWFNDFSPVRTHH--NNQSLAHQAY---YYVAMKFKDL-------- 779 (844)
Q Consensus 726 LfLNK~DLfeeK-----------I~~--spLs~c~~FPDF~g~~~~~--n~~sl~e~A~---~YI~~KFl~L-------- 779 (844)
+|+||+|+.... +.. .|+. .|-+....... -.+.+.+.++ +-+.++|++-
T Consensus 121 ivvNK~D~~~a~~~~~~~~i~~~~~~~~~~~~----~p~~~~~~~~~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el 196 (237)
T cd04168 121 IFVNKIDRAGADLEKVYQEIKEKLSSDIVPMQ----KVGLAPNICETNEIDDEFWETLAEGDDELLEKYLEGGPIEELEL 196 (237)
T ss_pred EEEECccccCCCHHHHHHHHHHHHCCCeEEEE----CCcEeeeeeeeeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHH
Confidence 999999987422 211 2222 23222100000 0011222221 1223333331
Q ss_pred ----hccCCCCcEE-EEEEeecCCCCHHHHHHHHHHHH
Q 042025 780 ----YASLTGRKLF-VWQARARDRVTVDEAFKYIREVL 812 (844)
Q Consensus 780 ----~~s~~~Rkly-vh~T~AtDte~I~evF~~V~e~I 812 (844)
.+....++++ |+..+|+...+++..++.|.+.+
T Consensus 197 ~~~l~~~~~~~~~~Pv~~gsa~~~~Gv~~ll~~~~~~~ 234 (237)
T cd04168 197 DNELSARIAKRKVFPVYHGSALKGIGIEELLEGITKLF 234 (237)
T ss_pred HHHHHHHHHhCCeEEEEEccccCCcCHHHHHHHHHHhc
Confidence 1111245666 77788999999999999887653
No 202
>PRK11058 GTPase HflX; Provisional
Probab=96.56 E-value=0.0066 Score=69.75 Aligned_cols=110 Identities=13% Similarity=0.183 Sum_probs=66.8
Q ss_pred eEEEEEeCCCCCCC--ccc------ceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCC
Q 042025 647 KYQLIRVNAKGMNE--GCK------WVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPC 718 (844)
Q Consensus 647 ~~~liDVGGQ~rse--R~K------W~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~ 718 (844)
.+.+||+.|. ... ... +...+.++|+||+|+|.++ .+ ....+.....+++.+-
T Consensus 246 ~~~l~DTaG~-~r~lp~~lve~f~~tl~~~~~ADlIL~VvDaS~-------~~-------~~e~l~~v~~iL~el~---- 306 (426)
T PRK11058 246 ETVLADTVGF-IRHLPHDLVAAFKATLQETRQATLLLHVVDAAD-------VR-------VQENIEAVNTVLEEID---- 306 (426)
T ss_pred eEEEEecCcc-cccCCHHHHHHHHHHHHHhhcCCEEEEEEeCCC-------cc-------HHHHHHHHHHHHHHhc----
Confidence 6789999998 322 122 3344678999999999985 11 0112222223333332
Q ss_pred CCCCcEEEEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCC
Q 042025 719 FKDTPFVLILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDR 798 (844)
Q Consensus 719 f~~tpiILfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDt 798 (844)
..+.|+|+++||+|+.... . .. +. . ... +-.+ +.++||.++
T Consensus 307 ~~~~pvIiV~NKiDL~~~~------~---------------------~~----~~-~-~~~-----~~~~-~v~ISAktG 347 (426)
T PRK11058 307 AHEIPTLLVMNKIDMLDDF------E---------------------PR----ID-R-DEE-----NKPI-RVWLSAQTG 347 (426)
T ss_pred cCCCCEEEEEEcccCCCch------h---------------------HH----HH-H-Hhc-----CCCc-eEEEeCCCC
Confidence 2368999999999985320 0 00 00 0 000 1111 456899999
Q ss_pred CCHHHHHHHHHHHHhh
Q 042025 799 VTVDEAFKYIREVLKW 814 (844)
Q Consensus 799 e~I~evF~~V~e~Ik~ 814 (844)
.||++.+++|.+.+..
T Consensus 348 ~GIdeL~e~I~~~l~~ 363 (426)
T PRK11058 348 AGIPLLFQALTERLSG 363 (426)
T ss_pred CCHHHHHHHHHHHhhh
Confidence 9999999999988754
No 203
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=96.52 E-value=0.014 Score=59.97 Aligned_cols=107 Identities=16% Similarity=0.191 Sum_probs=61.9
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCc-E
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTP-F 724 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tp-i 724 (844)
..+.++|+.|. ....+--......+|++|+|||..+ | .. .+..+++..+... +.| +
T Consensus 65 ~~i~~iDtPG~-~~~~~~~~~~~~~~D~~ilVvda~~-----------g----~~---~~~~~~~~~~~~~----~~~~i 121 (195)
T cd01884 65 RHYAHVDCPGH-ADYIKNMITGAAQMDGAILVVSATD-----------G----PM---PQTREHLLLARQV----GVPYI 121 (195)
T ss_pred eEEEEEECcCH-HHHHHHHHHHhhhCCEEEEEEECCC-----------C----Cc---HHHHHHHHHHHHc----CCCcE
Confidence 46899999998 4322222334557999999999763 1 01 1233344443332 345 8
Q ss_pred EEEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHH
Q 042025 725 VLILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVD 802 (844)
Q Consensus 725 ILfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~ 802 (844)
|+++||+|+..++ . . .+...+.|...+..+- .....+.+.++||+++.++.
T Consensus 122 IvviNK~D~~~~~-~---~---------------------~~~~~~~i~~~l~~~g--~~~~~v~iipiSa~~g~n~~ 172 (195)
T cd01884 122 VVFLNKADMVDDE-E---L---------------------LELVEMEVRELLSKYG--FDGDNTPIVRGSALKALEGD 172 (195)
T ss_pred EEEEeCCCCCCcH-H---H---------------------HHHHHHHHHHHHHHhc--ccccCCeEEEeeCccccCCC
Confidence 8999999986321 0 0 1222333444333331 11245789999999999864
No 204
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=96.48 E-value=0.0096 Score=66.85 Aligned_cols=94 Identities=18% Similarity=0.309 Sum_probs=61.0
Q ss_pred eeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcEEEEecccchhhhhhhccccc
Q 042025 665 VEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFVLILNKYDLFEEKVNRVHLS 744 (844)
Q Consensus 665 ~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpiILfLNK~DLfeeKI~~spLs 744 (844)
..++...+.|+||+|+.|++..+ .+.+. ..+ .+.|++|++||.|++.+. .
T Consensus 58 ~~~~~~~~~Il~VvD~~d~~~s~------------~~~l~-------~~~-----~~~piilV~NK~DLl~k~-----~- 107 (360)
T TIGR03597 58 NSLGDSNALIVYVVDIFDFEGSL------------IPELK-------RFV-----GGNPVLLVGNKIDLLPKS-----V- 107 (360)
T ss_pred hhcccCCcEEEEEEECcCCCCCc------------cHHHH-------HHh-----CCCCEEEEEEchhhCCCC-----C-
Confidence 34667889999999998765444 12222 222 257999999999997421 0
Q ss_pred cccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHHHHHHHHHHH
Q 042025 745 TCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVDEAFKYIREV 811 (844)
Q Consensus 745 ~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~evF~~V~e~ 811 (844)
+ .+.+.+|+...+.... . ..-.++.+||.++.++++.|+.+.+.
T Consensus 108 ---------------~----~~~~~~~l~~~~k~~g--~--~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 108 ---------------N----LSKIKEWMKKRAKELG--L--KPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred ---------------C----HHHHHHHHHHHHHHcC--C--CcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 0 2345556654443321 1 11237789999999999999998765
No 205
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=96.48 E-value=0.0063 Score=60.48 Aligned_cols=29 Identities=14% Similarity=0.231 Sum_probs=23.8
Q ss_pred hhhhhhcceeeEEEeeccCCChhhHHHHH
Q 042025 420 PNYLEQKKVQKLLLLGLQGAGTSTIFKQA 448 (844)
Q Consensus 420 d~~Le~k~~iKLLLLGsgeSGKSTI~KQm 448 (844)
+.++-.++..||+++|..++|||||++++
T Consensus 10 ~~~~~~~~~~~i~ivG~~~~GKStlin~l 38 (179)
T TIGR03598 10 LKQLPPDDGPEIAFAGRSNVGKSSLINAL 38 (179)
T ss_pred HhhCCCCCCCEEEEEcCCCCCHHHHHHHH
Confidence 34445577889999999999999999854
No 206
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=96.47 E-value=0.0055 Score=69.22 Aligned_cols=108 Identities=19% Similarity=0.208 Sum_probs=66.5
Q ss_pred ceEEEEEeCCCCC-------CCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCC
Q 042025 646 TKYQLIRVNAKGM-------NEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPC 718 (844)
Q Consensus 646 ~~~~liDVGGQ~r-------seR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~ 718 (844)
..+.+||++|... ..+..+..+++++++||||+|..+- . +. +...+.+ ++..
T Consensus 47 ~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad~vl~vvD~~~~--~-------------~~---~d~~i~~-~l~~-- 105 (429)
T TIGR03594 47 REFILIDTGGIEEDDDGLDKQIREQAEIAIEEADVILFVVDGREG--L-------------TP---EDEEIAK-WLRK-- 105 (429)
T ss_pred eEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCCEEEEEEeCCCC--C-------------CH---HHHHHHH-HHHH--
Confidence 4699999999621 1223455577899999999998740 0 11 1111222 2221
Q ss_pred CCCCcEEEEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCC
Q 042025 719 FKDTPFVLILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDR 798 (844)
Q Consensus 719 f~~tpiILfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDt 798 (844)
.+.|++|+.||+|+..... . ..+ |..+. . . .++.+||..+
T Consensus 106 -~~~piilVvNK~D~~~~~~---------------------~----~~~--------~~~lg--~--~--~~~~vSa~~g 145 (429)
T TIGR03594 106 -SGKPVILVANKIDGKKEDA---------------------V----AAE--------FYSLG--F--G--EPIPISAEHG 145 (429)
T ss_pred -hCCCEEEEEECccCCcccc---------------------c----HHH--------HHhcC--C--C--CeEEEeCCcC
Confidence 3689999999999864210 0 111 22221 0 1 2678899999
Q ss_pred CCHHHHHHHHHHHHhh
Q 042025 799 VTVDEAFKYIREVLKW 814 (844)
Q Consensus 799 e~I~evF~~V~e~Ik~ 814 (844)
.++.+.++++.+.+..
T Consensus 146 ~gv~~ll~~i~~~l~~ 161 (429)
T TIGR03594 146 RGIGDLLDAILELLPE 161 (429)
T ss_pred CChHHHHHHHHHhcCc
Confidence 9999999998887743
No 207
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=96.47 E-value=0.0034 Score=67.79 Aligned_cols=67 Identities=12% Similarity=0.085 Sum_probs=50.0
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcEE
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFV 725 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpiI 725 (844)
.++.+||+.|+ ......|..++..+|++|||||.++--+ .....+++.+.. .+.|+|
T Consensus 64 ~~i~liDTPG~-~df~~~~~~~l~~aD~ailVVDa~~g~~------------------~~t~~~~~~~~~----~~~p~i 120 (270)
T cd01886 64 HRINIIDTPGH-VDFTIEVERSLRVLDGAVAVFDAVAGVE------------------PQTETVWRQADR----YNVPRI 120 (270)
T ss_pred EEEEEEECCCc-HHHHHHHHHHHHHcCEEEEEEECCCCCC------------------HHHHHHHHHHHH----cCCCEE
Confidence 57999999999 6677789999999999999999875211 122344444332 357999
Q ss_pred EEecccchhh
Q 042025 726 LILNKYDLFE 735 (844)
Q Consensus 726 LfLNK~DLfe 735 (844)
+|+||+|+..
T Consensus 121 vviNK~D~~~ 130 (270)
T cd01886 121 AFVNKMDRTG 130 (270)
T ss_pred EEEECCCCCC
Confidence 9999999864
No 208
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=96.45 E-value=0.0086 Score=68.37 Aligned_cols=114 Identities=18% Similarity=0.216 Sum_probs=65.7
Q ss_pred ceEEEEEeCCCCCCCcccceeccC---CccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCC
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFE---DVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDT 722 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~Fe---dV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~t 722 (844)
..+.+||+.|+ .... ..++. ++|++|+|||.++ .. . .. ++.+.+..+- .+...
T Consensus 85 ~~i~liDtPG~-~~f~---~~~~~~~~~~D~~llVVDa~~-------~~-~------~~---~t~~~l~~l~---~~~i~ 140 (411)
T PRK04000 85 RRVSFVDAPGH-ETLM---ATMLSGAALMDGAILVIAANE-------PC-P------QP---QTKEHLMALD---IIGIK 140 (411)
T ss_pred cEEEEEECCCH-HHHH---HHHHHHHhhCCEEEEEEECCC-------CC-C------Ch---hHHHHHHHHH---HcCCC
Confidence 46899999999 4332 24444 4699999999884 10 0 01 1122222221 12224
Q ss_pred cEEEEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHH
Q 042025 723 PFVLILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVD 802 (844)
Q Consensus 723 piILfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~ 802 (844)
+++|++||+|+..+. . .....+.+.. |.... ....+-+..+||.++++|+
T Consensus 141 ~iiVVlNK~Dl~~~~----~----------------------~~~~~~~i~~-~l~~~---~~~~~~ii~vSA~~g~gI~ 190 (411)
T PRK04000 141 NIVIVQNKIDLVSKE----R----------------------ALENYEQIKE-FVKGT---VAENAPIIPVSALHKVNID 190 (411)
T ss_pred cEEEEEEeeccccch----h----------------------HHHHHHHHHH-Hhccc---cCCCCeEEEEECCCCcCHH
Confidence 799999999986421 0 0011111211 11110 0123557889999999999
Q ss_pred HHHHHHHHHHh
Q 042025 803 EAFKYIREVLK 813 (844)
Q Consensus 803 evF~~V~e~Ik 813 (844)
+.|++|.+.+.
T Consensus 191 ~L~~~L~~~l~ 201 (411)
T PRK04000 191 ALIEAIEEEIP 201 (411)
T ss_pred HHHHHHHHhCC
Confidence 99999988764
No 209
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=96.44 E-value=0.015 Score=65.15 Aligned_cols=105 Identities=18% Similarity=0.226 Sum_probs=64.1
Q ss_pred ceEEEEEeCCCCCCC---------cccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcC
Q 042025 646 TKYQLIRVNAKGMNE---------GCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRH 716 (844)
Q Consensus 646 ~~~~liDVGGQ~rse---------R~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~ 716 (844)
..+.+||+.|. ... +.-| ..+.++|.||||+|.++-+. ...+..-..+++.+
T Consensus 237 ~~i~l~DT~G~-~~~l~~~lie~f~~tl-e~~~~ADlil~VvD~s~~~~--------------~~~~~~~~~~L~~l--- 297 (351)
T TIGR03156 237 GEVLLTDTVGF-IRDLPHELVAAFRATL-EEVREADLLLHVVDASDPDR--------------EEQIEAVEKVLEEL--- 297 (351)
T ss_pred ceEEEEecCcc-cccCCHHHHHHHHHHH-HHHHhCCEEEEEEECCCCch--------------HHHHHHHHHHHHHh---
Confidence 47899999997 221 1111 13568999999999985210 11122222333332
Q ss_pred CCCCCCcEEEEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeec
Q 042025 717 PCFKDTPFVLILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARAR 796 (844)
Q Consensus 717 p~f~~tpiILfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~At 796 (844)
...+.|+|+++||+|+.... . .. .+ .. . . ..+.++||.
T Consensus 298 -~~~~~piIlV~NK~Dl~~~~-------~-------------------v~----~~----~~---~--~--~~~i~iSAk 335 (351)
T TIGR03156 298 -GAEDIPQLLVYNKIDLLDEP-------R-------------------IE----RL----EE---G--Y--PEAVFVSAK 335 (351)
T ss_pred -ccCCCCEEEEEEeecCCChH-------h-------------------HH----HH----Hh---C--C--CCEEEEEcc
Confidence 23468999999999985310 0 00 01 00 0 0 125789999
Q ss_pred CCCCHHHHHHHHHHH
Q 042025 797 DRVTVDEAFKYIREV 811 (844)
Q Consensus 797 Dte~I~evF~~V~e~ 811 (844)
++.||++.+++|.+.
T Consensus 336 tg~GI~eL~~~I~~~ 350 (351)
T TIGR03156 336 TGEGLDLLLEAIAER 350 (351)
T ss_pred CCCCHHHHHHHHHhh
Confidence 999999999998764
No 210
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=96.44 E-value=0.015 Score=67.24 Aligned_cols=66 Identities=20% Similarity=0.313 Sum_probs=43.6
Q ss_pred ceEEEEEeCCCCCCCcccc--------eeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCC
Q 042025 646 TKYQLIRVNAKGMNEGCKW--------VEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHP 717 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW--------~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p 717 (844)
..+++||+.|+ +.....| ..++.+++++|||+|.++ ... .+ .. ++..+..
T Consensus 251 ~~v~l~DTaG~-~~~~~~ie~~gi~~~~~~~~~aD~il~V~D~s~-------~~s-------~~----~~-~l~~~~~-- 308 (442)
T TIGR00450 251 ILIKLLDTAGI-REHADFVERLGIEKSFKAIKQADLVIYVLDASQ-------PLT-------KD----DF-LIIDLNK-- 308 (442)
T ss_pred EEEEEeeCCCc-ccchhHHHHHHHHHHHHHHhhCCEEEEEEECCC-------CCC-------hh----HH-HHHHHhh--
Confidence 46899999999 4433222 247789999999999885 111 01 11 2333321
Q ss_pred CCCCCcEEEEecccchhh
Q 042025 718 CFKDTPFVLILNKYDLFE 735 (844)
Q Consensus 718 ~f~~tpiILfLNK~DLfe 735 (844)
.+.|+|+++||.|+..
T Consensus 309 --~~~piIlV~NK~Dl~~ 324 (442)
T TIGR00450 309 --SKKPFILVLNKIDLKI 324 (442)
T ss_pred --CCCCEEEEEECccCCC
Confidence 3679999999999854
No 211
>PRK13768 GTPase; Provisional
Probab=96.40 E-value=0.0059 Score=65.22 Aligned_cols=134 Identities=20% Similarity=0.247 Sum_probs=69.3
Q ss_pred eEEEEEeCCCCCC---CcccceeccCC-----ccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCC
Q 042025 647 KYQLIRVNAKGMN---EGCKWVEMFED-----VRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPC 718 (844)
Q Consensus 647 ~~~liDVGGQ~rs---eR~KW~~~Fed-----V~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~ 718 (844)
.|.+||++|+ .. .|..|..+++. .++|||++|.+...+ .+.+.... ++...+..
T Consensus 98 ~~~~~d~~g~-~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~--------------~~d~~~~~-~l~~~~~~-- 159 (253)
T PRK13768 98 DYVLVDTPGQ-MELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKT--------------PSDFVSLL-LLALSVQL-- 159 (253)
T ss_pred CEEEEeCCcH-HHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCC--------------HHHHHHHH-HHHHHHHH--
Confidence 5889999998 32 35667554443 789999999874111 11111111 11111111
Q ss_pred CCCCcEEEEecccchhhhhhhccccccccccCC-------CCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEE
Q 042025 719 FKDTPFVLILNKYDLFEEKVNRVHLSTCEWFND-------FSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVW 791 (844)
Q Consensus 719 f~~tpiILfLNK~DLfeeKI~~spLs~c~~FPD-------F~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh 791 (844)
..+.|+|+++||.|+..+--....+. ++.+ +.-..+ .. .....=|...+.++ +....+.
T Consensus 160 ~~~~~~i~v~nK~D~~~~~~~~~~~~---~l~~~~~~~~~l~~~~~--~~----~~~~~~~~~~i~~~-----~~~~~vi 225 (253)
T PRK13768 160 RLGLPQIPVLNKADLLSEEELERILK---WLEDPEYLLEELKLEKG--LQ----GLLSLELLRALEET-----GLPVRVI 225 (253)
T ss_pred HcCCCEEEEEEhHhhcCchhHHHHHH---HHhCHHHHHHHHhcccc--hH----HHHHHHHHHHHHHH-----CCCCcEE
Confidence 13689999999999975311000000 1111 000000 00 00001111111111 1123467
Q ss_pred EEeecCCCCHHHHHHHHHHHH
Q 042025 792 QARARDRVTVDEAFKYIREVL 812 (844)
Q Consensus 792 ~T~AtDte~I~evF~~V~e~I 812 (844)
.+||++++++++.++|+.+.+
T Consensus 226 ~iSa~~~~gl~~L~~~I~~~l 246 (253)
T PRK13768 226 PVSAKTGEGFDELYAAIQEVF 246 (253)
T ss_pred EEECCCCcCHHHHHHHHHHHc
Confidence 899999999999999998876
No 212
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=96.31 E-value=0.013 Score=55.38 Aligned_cols=25 Identities=16% Similarity=0.009 Sum_probs=21.3
Q ss_pred EEEEEEeecCCCCHHHHHHHHHHHH
Q 042025 788 LFVWQARARDRVTVDEAFKYIREVL 812 (844)
Q Consensus 788 lyvh~T~AtDte~I~evF~~V~e~I 812 (844)
..++.++|+++.+++++++++.+.+
T Consensus 146 ~~~~~~Sa~~~~~~~~l~~~l~~~~ 170 (170)
T cd01876 146 PPIILFSSLKGQGIDELRALIEKWL 170 (170)
T ss_pred CceEEEecCCCCCHHHHHHHHHHhC
Confidence 4477999999999999999998753
No 213
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=96.27 E-value=0.028 Score=58.68 Aligned_cols=124 Identities=15% Similarity=0.178 Sum_probs=75.9
Q ss_pred CceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHH-HHHHHHHHHcCCCCCCCc
Q 042025 645 LTKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQ-SKELFEMMIRHPCFKDTP 723 (844)
Q Consensus 645 ~~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~E-Sl~LFesI~n~p~f~~tp 723 (844)
.+.+.+||..|| ...-+.|.-.|.++|.+|.|.++++-. -+++ +.+.+-+|-.+ -.++|
T Consensus 52 ~v~L~LwDTAGq-edYDrlRplsY~~tdvfl~cfsv~~p~-----------------S~~nv~~kW~pEi~~~--cp~vp 111 (198)
T KOG0393|consen 52 PVELGLWDTAGQ-EDYDRLRPLSYPQTDVFLLCFSVVSPE-----------------SFENVKSKWIPEIKHH--CPNVP 111 (198)
T ss_pred EEEEeeeecCCC-cccccccccCCCCCCEEEEEEEcCChh-----------------hHHHHHhhhhHHHHhh--CCCCC
Confidence 468999999999 565557766889999999888876421 1222 22223333332 15899
Q ss_pred EEEEecccchhhhh-----hhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCC
Q 042025 724 FVLILNKYDLFEEK-----VNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDR 798 (844)
Q Consensus 724 iILfLNK~DLfeeK-----I~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDt 798 (844)
+||+.+|.||-..+ +.+..+.. + . .+++ ..+.+.+ ...-..-|+|+..
T Consensus 112 iiLVGtk~DLr~d~~~~~~l~~~~~~~---------V----t----~~~g--------~~lA~~i--ga~~y~EcSa~tq 164 (198)
T KOG0393|consen 112 IILVGTKADLRDDPSTLEKLQRQGLEP---------V----T----YEQG--------LELAKEI--GAVKYLECSALTQ 164 (198)
T ss_pred EEEEeehHHhhhCHHHHHHHHhccCCc---------c----c----HHHH--------HHHHHHh--Ccceeeeehhhhh
Confidence 99999999998543 22211110 0 0 1111 1122111 2244677999999
Q ss_pred CCHHHHHHHHHHHHhhh
Q 042025 799 VTVDEAFKYIREVLKWD 815 (844)
Q Consensus 799 e~I~evF~~V~e~Ik~~ 815 (844)
.+++++|+......+..
T Consensus 165 ~~v~~vF~~a~~~~l~~ 181 (198)
T KOG0393|consen 165 KGVKEVFDEAIRAALRP 181 (198)
T ss_pred CCcHHHHHHHHHHHhcc
Confidence 99999999666555443
No 214
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=96.23 E-value=0.03 Score=56.79 Aligned_cols=117 Identities=16% Similarity=0.237 Sum_probs=76.6
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcEE
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFV 725 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpiI 725 (844)
..+.+||..|| ......=.-||.+.++.|.|.|++|-|. -.+...=...+..++.+ ..-++
T Consensus 62 a~L~IWDTAGQ-ErfHALGPIYYRgSnGalLVyDITDrdS--------------FqKVKnWV~Elr~mlGn----ei~l~ 122 (218)
T KOG0088|consen 62 ADLHIWDTAGQ-ERFHALGPIYYRGSNGALLVYDITDRDS--------------FQKVKNWVLELRTMLGN----EIELL 122 (218)
T ss_pred eeeeeeeccch-HhhhccCceEEeCCCceEEEEeccchHH--------------HHHHHHHHHHHHHHhCC----eeEEE
Confidence 56889999999 5544455559999999999999997222 22222223334444443 35789
Q ss_pred EEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHHHHH
Q 042025 726 LILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVDEAF 805 (844)
Q Consensus 726 LfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~evF 805 (844)
++-||+||-+++ ..+ .++|..|-..- + ..|+ -|+|.+..+|.+.|
T Consensus 123 IVGNKiDLEeeR----~Vt--------------------~qeAe~YAesv---------G-A~y~-eTSAk~N~Gi~elF 167 (218)
T KOG0088|consen 123 IVGNKIDLEEER----QVT--------------------RQEAEAYAESV---------G-ALYM-ETSAKDNVGISELF 167 (218)
T ss_pred EecCcccHHHhh----hhh--------------------HHHHHHHHHhh---------c-hhhe-ecccccccCHHHHH
Confidence 999999998873 121 23444443211 1 2333 47999999999999
Q ss_pred HHHHHHHhhhh
Q 042025 806 KYIREVLKWDD 816 (844)
Q Consensus 806 ~~V~e~Ik~~~ 816 (844)
..+...+....
T Consensus 168 e~Lt~~MiE~~ 178 (218)
T KOG0088|consen 168 ESLTAKMIEHS 178 (218)
T ss_pred HHHHHHHHHHh
Confidence 99987665444
No 215
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=96.22 E-value=0.024 Score=60.42 Aligned_cols=88 Identities=14% Similarity=0.224 Sum_probs=55.7
Q ss_pred eccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcEEEEecccchhhhhhhcccccc
Q 042025 666 EMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFVLILNKYDLFEEKVNRVHLST 745 (844)
Q Consensus 666 ~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpiILfLNK~DLfeeKI~~spLs~ 745 (844)
.++.++|.+|.|.|+.+ .+. ..+.+..-+..++ + .+.|++|++||.||..+. .
T Consensus 32 ~~~~n~D~viiV~d~~~-------p~~------s~~~l~r~l~~~~----~---~~i~~vIV~NK~DL~~~~----~--- 84 (245)
T TIGR00157 32 PIVANIDQIVIVSSAVL-------PEL------SLNQLDRFLVVAE----A---QNIEPIIVLNKIDLLDDE----D--- 84 (245)
T ss_pred cccccCCEEEEEEECCC-------CCC------CHHHHHHHHHHHH----H---CCCCEEEEEECcccCCCH----H---
Confidence 47999999999999985 221 1344433333322 2 578999999999985421 0
Q ss_pred ccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHHHHHHHHH
Q 042025 746 CEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVDEAFKYIR 809 (844)
Q Consensus 746 c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~evF~~V~ 809 (844)
... + ....|.. ..+.++.+||.++++|++.|+.+.
T Consensus 85 -------------------~~~--~-~~~~~~~-------~g~~v~~~SAktg~gi~eLf~~l~ 119 (245)
T TIGR00157 85 -------------------MEK--E-QLDIYRN-------IGYQVLMTSSKNQDGLKELIEALQ 119 (245)
T ss_pred -------------------HHH--H-HHHHHHH-------CCCeEEEEecCCchhHHHHHhhhc
Confidence 000 1 1112321 123477899999999999998875
No 216
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=96.17 E-value=0.031 Score=56.94 Aligned_cols=125 Identities=18% Similarity=0.205 Sum_probs=84.2
Q ss_pred CCCCceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCC
Q 042025 642 PQPLTKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKD 721 (844)
Q Consensus 642 ~~~~~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~ 721 (844)
.+..+++++||..|| ...|.-=..||.|.-+++.|-|++. .++- ....|-|.||..-.+ .| .+
T Consensus 54 pg~riklqlwdtagq-erfrsitksyyrnsvgvllvyditn-------r~sf---ehv~~w~~ea~m~~q----~P--~k 116 (213)
T KOG0091|consen 54 PGYRIKLQLWDTAGQ-ERFRSITKSYYRNSVGVLLVYDITN-------RESF---EHVENWVKEAAMATQ----GP--DK 116 (213)
T ss_pred CCcEEEEEEeeccch-HHHHHHHHHHhhcccceEEEEeccc-------hhhH---HHHHHHHHHHHHhcC----CC--Ce
Confidence 344689999999999 7888888889999999999988874 1110 012455656544332 23 24
Q ss_pred CcEEEEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCH
Q 042025 722 TPFVLILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTV 801 (844)
Q Consensus 722 tpiILfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I 801 (844)
.-|+|+..|.||-..+ ..+ +++|.+ ++ . ...+...-|+|.++.||
T Consensus 117 ~VFlLVGhKsDL~SqR----qVt--------------------~EEaEk-lA-----a-----~hgM~FVETSak~g~NV 161 (213)
T KOG0091|consen 117 VVFLLVGHKSDLQSQR----QVT--------------------AEEAEK-LA-----A-----SHGMAFVETSAKNGCNV 161 (213)
T ss_pred eEEEEeccccchhhhc----ccc--------------------HHHHHH-HH-----H-----hcCceEEEecccCCCcH
Confidence 6688888999997531 111 455533 21 1 23566778999999999
Q ss_pred HHHHHHHHHHHhhhhhc
Q 042025 802 DEAFKYIREVLKWDDEK 818 (844)
Q Consensus 802 ~evF~~V~e~Ik~~~~k 818 (844)
+++|+-|.+-|...-.+
T Consensus 162 eEAF~mlaqeIf~~i~q 178 (213)
T KOG0091|consen 162 EEAFDMLAQEIFQAIQQ 178 (213)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 99999888766544433
No 217
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=96.16 E-value=0.0053 Score=66.16 Aligned_cols=67 Identities=18% Similarity=0.247 Sum_probs=46.3
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcEE
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFV 725 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpiI 725 (844)
.++.+||+.|+ ......+..++..++++|||+|.++-- . .....+|+.. . ..+.|++
T Consensus 71 ~~i~liDTPG~-~df~~~~~~~l~~aD~~IlVvda~~g~---------------~---~~~~~i~~~~-~---~~~~P~i 127 (267)
T cd04169 71 CVINLLDTPGH-EDFSEDTYRTLTAVDSAVMVIDAAKGV---------------E---PQTRKLFEVC-R---LRGIPII 127 (267)
T ss_pred EEEEEEECCCc-hHHHHHHHHHHHHCCEEEEEEECCCCc---------------c---HHHHHHHHHH-H---hcCCCEE
Confidence 68999999999 555555666788999999999987410 0 0112233322 2 1368999
Q ss_pred EEecccchhh
Q 042025 726 LILNKYDLFE 735 (844)
Q Consensus 726 LfLNK~DLfe 735 (844)
+|+||+|+..
T Consensus 128 ivvNK~D~~~ 137 (267)
T cd04169 128 TFINKLDREG 137 (267)
T ss_pred EEEECCccCC
Confidence 9999999854
No 218
>PRK12740 elongation factor G; Reviewed
Probab=96.05 E-value=0.016 Score=69.83 Aligned_cols=69 Identities=14% Similarity=0.130 Sum_probs=50.0
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcEE
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFV 725 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpiI 725 (844)
..+.+||+.|+ ......|..++..+|++|+|||.++-.+ .....++..+.. .+.|+|
T Consensus 60 ~~i~liDtPG~-~~~~~~~~~~l~~aD~vllvvd~~~~~~------------------~~~~~~~~~~~~----~~~p~i 116 (668)
T PRK12740 60 HKINLIDTPGH-VDFTGEVERALRVLDGAVVVVCAVGGVE------------------PQTETVWRQAEK----YGVPRI 116 (668)
T ss_pred EEEEEEECCCc-HHHHHHHHHHHHHhCeEEEEEeCCCCcC------------------HHHHHHHHHHHH----cCCCEE
Confidence 57999999999 5555678888999999999999885111 123344444433 267999
Q ss_pred EEecccchhhhh
Q 042025 726 LILNKYDLFEEK 737 (844)
Q Consensus 726 LfLNK~DLfeeK 737 (844)
+++||+|+....
T Consensus 117 iv~NK~D~~~~~ 128 (668)
T PRK12740 117 IFVNKMDRAGAD 128 (668)
T ss_pred EEEECCCCCCCC
Confidence 999999987433
No 219
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=95.93 E-value=0.066 Score=52.42 Aligned_cols=48 Identities=21% Similarity=0.301 Sum_probs=30.2
Q ss_pred cCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcEEEEecccchhh
Q 042025 668 FEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFVLILNKYDLFE 735 (844)
Q Consensus 668 FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpiILfLNK~DLfe 735 (844)
.+++|.||||+|.++.. .. .++ . +...+.. .-.+.|+|+++||+|++.
T Consensus 6 l~~aD~il~VvD~~~p~-------~~------~~~-----~-i~~~l~~-~~~~~p~ilVlNKiDl~~ 53 (157)
T cd01858 6 IDSSDVVIQVLDARDPM-------GT------RCK-----H-VEEYLKK-EKPHKHLIFVLNKCDLVP 53 (157)
T ss_pred hhhCCEEEEEEECCCCc-------cc------cCH-----H-HHHHHHh-ccCCCCEEEEEEchhcCC
Confidence 57899999999988521 10 111 1 2222222 123589999999999964
No 220
>PRK12736 elongation factor Tu; Reviewed
Probab=95.90 E-value=0.037 Score=62.82 Aligned_cols=66 Identities=23% Similarity=0.315 Sum_probs=40.7
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCc-E
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTP-F 724 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tp-i 724 (844)
..+.++|+.|+ ....+.-..-...+|++|+|||..+ | -...+++.+..+... +.| +
T Consensus 75 ~~i~~iDtPGh-~~f~~~~~~~~~~~d~~llVvd~~~-----------g-------~~~~t~~~~~~~~~~----g~~~~ 131 (394)
T PRK12736 75 RHYAHVDCPGH-ADYVKNMITGAAQMDGAILVVAATD-----------G-------PMPQTREHILLARQV----GVPYL 131 (394)
T ss_pred cEEEEEECCCH-HHHHHHHHHHHhhCCEEEEEEECCC-----------C-------CchhHHHHHHHHHHc----CCCEE
Confidence 46889999998 4222211222346799999999763 1 012334444443332 466 7
Q ss_pred EEEecccchh
Q 042025 725 VLILNKYDLF 734 (844)
Q Consensus 725 ILfLNK~DLf 734 (844)
||++||+|+.
T Consensus 132 IvviNK~D~~ 141 (394)
T PRK12736 132 VVFLNKVDLV 141 (394)
T ss_pred EEEEEecCCc
Confidence 8899999986
No 221
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=95.89 E-value=0.0099 Score=61.12 Aligned_cols=66 Identities=20% Similarity=0.221 Sum_probs=47.5
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcEE
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFV 725 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpiI 725 (844)
..+.+||+.|+ ......+..++..++++|+|+|.++-.. .+...+++.... .+.|++
T Consensus 71 ~~i~iiDtpG~-~~f~~~~~~~~~~aD~~llVvD~~~~~~------------------~~~~~~~~~~~~----~~~p~i 127 (213)
T cd04167 71 YLFNIIDTPGH-VNFMDEVAAALRLSDGVVLVVDVVEGVT------------------SNTERLIRHAIL----EGLPIV 127 (213)
T ss_pred EEEEEEECCCC-cchHHHHHHHHHhCCEEEEEEECCCCCC------------------HHHHHHHHHHHH----cCCCEE
Confidence 57899999999 6666678888999999999999874111 011222232222 247999
Q ss_pred EEecccchh
Q 042025 726 LILNKYDLF 734 (844)
Q Consensus 726 LfLNK~DLf 734 (844)
|++||.|+.
T Consensus 128 iviNK~D~~ 136 (213)
T cd04167 128 LVINKIDRL 136 (213)
T ss_pred EEEECcccC
Confidence 999999986
No 222
>PRK04004 translation initiation factor IF-2; Validated
Probab=95.86 E-value=0.04 Score=65.92 Aligned_cols=64 Identities=19% Similarity=0.246 Sum_probs=45.8
Q ss_pred EEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcEEEE
Q 042025 648 YQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFVLI 727 (844)
Q Consensus 648 ~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpiILf 727 (844)
+.+||+.|+ ...+..|...+..+|++|||+|.++= . ...-.+++.++. . .+.|++|+
T Consensus 73 i~~iDTPG~-e~f~~~~~~~~~~aD~~IlVvDa~~g---~------------~~qt~e~i~~~~---~----~~vpiIvv 129 (586)
T PRK04004 73 LLFIDTPGH-EAFTNLRKRGGALADIAILVVDINEG---F------------QPQTIEAINILK---R----RKTPFVVA 129 (586)
T ss_pred EEEEECCCh-HHHHHHHHHhHhhCCEEEEEEECCCC---C------------CHhHHHHHHHHH---H----cCCCEEEE
Confidence 789999999 67777788788899999999998741 0 011112233322 1 36899999
Q ss_pred ecccchh
Q 042025 728 LNKYDLF 734 (844)
Q Consensus 728 LNK~DLf 734 (844)
+||+|+.
T Consensus 130 iNK~D~~ 136 (586)
T PRK04004 130 ANKIDRI 136 (586)
T ss_pred EECcCCc
Confidence 9999985
No 223
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=95.83 E-value=0.061 Score=54.13 Aligned_cols=102 Identities=21% Similarity=0.254 Sum_probs=66.3
Q ss_pred ceEEEEEeCCCCCC------Ccccceecc--CCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCC
Q 042025 646 TKYQLIRVNAKGMN------EGCKWVEMF--EDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHP 717 (844)
Q Consensus 646 ~~~~liDVGGQ~rs------eR~KW~~~F--edV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p 717 (844)
..+.++|+-|. -+ +.+-+.++. +..|+||+|+|.+. ++.++.+...+...
T Consensus 47 ~~~~lvDlPG~-ysl~~~s~ee~v~~~~l~~~~~D~ii~VvDa~~--------------------l~r~l~l~~ql~e~- 104 (156)
T PF02421_consen 47 QQVELVDLPGI-YSLSSKSEEERVARDYLLSEKPDLIIVVVDATN--------------------LERNLYLTLQLLEL- 104 (156)
T ss_dssp EEEEEEE-----SSSSSSSHHHHHHHHHHHHTSSSEEEEEEEGGG--------------------HHHHHHHHHHHHHT-
T ss_pred ceEEEEECCCc-ccCCCCCcHHHHHHHHHhhcCCCEEEEECCCCC--------------------HHHHHHHHHHHHHc-
Confidence 47899999874 22 223444553 68999999999752 56667777777764
Q ss_pred CCCCCcEEEEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecC
Q 042025 718 CFKDTPFVLILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARD 797 (844)
Q Consensus 718 ~f~~tpiILfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtD 797 (844)
+.|+|+++||+|+.+++ -+.. + .+ .+.++ + .+-+..++|.+
T Consensus 105 ---g~P~vvvlN~~D~a~~~----g~~i--------------d----~~----~Ls~~---L-------g~pvi~~sa~~ 145 (156)
T PF02421_consen 105 ---GIPVVVVLNKMDEAERK----GIEI--------------D----AE----KLSER---L-------GVPVIPVSART 145 (156)
T ss_dssp ---TSSEEEEEETHHHHHHT----TEEE-------------------HH----HHHHH---H-------TS-EEEEBTTT
T ss_pred ---CCCEEEEEeCHHHHHHc----CCEE--------------C----HH----HHHHH---h-------CCCEEEEEeCC
Confidence 58999999999998863 1110 0 11 12222 1 12389999999
Q ss_pred CCCHHHHHHHH
Q 042025 798 RVTVDEAFKYI 808 (844)
Q Consensus 798 te~I~evF~~V 808 (844)
++++++.++.|
T Consensus 146 ~~g~~~L~~~I 156 (156)
T PF02421_consen 146 GEGIDELKDAI 156 (156)
T ss_dssp TBTHHHHHHHH
T ss_pred CcCHHHHHhhC
Confidence 99999988765
No 224
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=95.74 E-value=0.018 Score=49.15 Aligned_cols=45 Identities=24% Similarity=0.474 Sum_probs=31.2
Q ss_pred ccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcEEEEecccc
Q 042025 671 VRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFVLILNKYD 732 (844)
Q Consensus 671 V~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpiILfLNK~D 732 (844)
.++|+|++|+|+.. | --+++-+.||++|-. .|.+.|+++++||.|
T Consensus 14 ~~~ilfi~D~Se~C---------G------ysie~Q~~L~~~ik~--~F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 14 ADAILFIIDPSEQC---------G------YSIEEQLSLFKEIKP--LFPNKPVIVVLNKID 58 (58)
T ss_dssp -SEEEEEE-TT-TT---------S------S-HHHHHHHHHHHHH--HTTTS-EEEEE--TT
T ss_pred cceEEEEEcCCCCC---------C------CCHHHHHHHHHHHHH--HcCCCCEEEEEeccC
Confidence 36899999999632 2 246777899999876 588999999999998
No 225
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=95.71 E-value=0.068 Score=56.23 Aligned_cols=68 Identities=15% Similarity=0.130 Sum_probs=42.4
Q ss_pred ceEEEEEeCCCCCCCcccceecc--CCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCc
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMF--EDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTP 723 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~F--edV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tp 723 (844)
..+.++|+.|+ ....+.=.... ..+|.+++|||..+ + . ....+.++..+... +.|
T Consensus 84 ~~i~liDtpG~-~~~~~~~~~~~~~~~~D~~llVvda~~-----------g-----~--~~~d~~~l~~l~~~----~ip 140 (224)
T cd04165 84 KLVTFIDLAGH-ERYLKTTLFGLTGYAPDYAMLVVAANA-----------G-----I--IGMTKEHLGLALAL----NIP 140 (224)
T ss_pred cEEEEEECCCc-HHHHHHHHHhhcccCCCEEEEEEECCC-----------C-----C--cHHHHHHHHHHHHc----CCC
Confidence 47899999998 33222111122 25789999999763 1 1 12344555554442 478
Q ss_pred EEEEecccchhhh
Q 042025 724 FVLILNKYDLFEE 736 (844)
Q Consensus 724 iILfLNK~DLfee 736 (844)
+++++||.|+..+
T Consensus 141 ~ivvvNK~D~~~~ 153 (224)
T cd04165 141 VFVVVTKIDLAPA 153 (224)
T ss_pred EEEEEECccccCH
Confidence 9999999998643
No 226
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.71 E-value=0.035 Score=55.22 Aligned_cols=116 Identities=16% Similarity=0.159 Sum_probs=76.1
Q ss_pred CCceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCc
Q 042025 644 PLTKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTP 723 (844)
Q Consensus 644 ~~~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tp 723 (844)
..+++++||..|| ...|..-..||.++.+.+.|-|++. .+ +.|.|.-=+.--+.+ .+| ++-
T Consensus 58 qkiklqiwdtagq-erfravtrsyyrgaagalmvyditr--------rs------tynhlsswl~dar~l-tnp---nt~ 118 (215)
T KOG0097|consen 58 QKIKLQIWDTAGQ-ERFRAVTRSYYRGAAGALMVYDITR--------RS------TYNHLSSWLTDARNL-TNP---NTV 118 (215)
T ss_pred cEEEEEEeecccH-HHHHHHHHHHhccccceeEEEEehh--------hh------hhhhHHHHHhhhhcc-CCC---ceE
Confidence 3689999999999 7788888889999999888888763 11 234432111111111 222 678
Q ss_pred EEEEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHHH
Q 042025 724 FVLILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVDE 803 (844)
Q Consensus 724 iILfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~e 803 (844)
|+|+-||.||-.++ ... +++|.+|- .- .-+...-++|.++++|+.
T Consensus 119 i~lignkadle~qr----dv~--------------------yeeak~fa-----ee------ngl~fle~saktg~nved 163 (215)
T KOG0097|consen 119 IFLIGNKADLESQR----DVT--------------------YEEAKEFA-----EE------NGLMFLEASAKTGQNVED 163 (215)
T ss_pred EEEecchhhhhhcc----cCc--------------------HHHHHHHH-----hh------cCeEEEEecccccCcHHH
Confidence 99999999986541 110 45665432 21 235567789999999999
Q ss_pred HHHHHHHHHh
Q 042025 804 AFKYIREVLK 813 (844)
Q Consensus 804 vF~~V~e~Ik 813 (844)
+|-.....|.
T Consensus 164 afle~akkiy 173 (215)
T KOG0097|consen 164 AFLETAKKIY 173 (215)
T ss_pred HHHHHHHHHH
Confidence 9875555543
No 227
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=95.68 E-value=0.059 Score=54.89 Aligned_cols=116 Identities=15% Similarity=0.155 Sum_probs=82.2
Q ss_pred CceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcE
Q 042025 645 LTKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPF 724 (844)
Q Consensus 645 ~~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpi 724 (844)
..++.+||..|| ...|..=..||.++.+||.|-|.+.-| .--+|.-=++.++.-+.++ +.-.
T Consensus 59 ~~KlaiWDTAGq-ErFRtLTpSyyRgaqGiIlVYDVT~Rd--------------tf~kLd~W~~Eld~Ystn~---diik 120 (209)
T KOG0080|consen 59 RLKLAIWDTAGQ-ERFRTLTPSYYRGAQGIILVYDVTSRD--------------TFVKLDIWLKELDLYSTNP---DIIK 120 (209)
T ss_pred eEEEEEEeccch-HhhhccCHhHhccCceeEEEEEccchh--------------hHHhHHHHHHHHHhhcCCc---cHhH
Confidence 578999999999 788988999999999999998887422 1334555566667777766 3457
Q ss_pred EEEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHHHH
Q 042025 725 VLILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVDEA 804 (844)
Q Consensus 725 ILfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~ev 804 (844)
+|+.||+|.-.++. .. -++..+ |.+- ...-.+-|+|...++|+.+
T Consensus 121 mlVgNKiDkes~R~----V~--------------------reEG~k-----fAr~------h~~LFiE~SAkt~~~V~~~ 165 (209)
T KOG0080|consen 121 MLVGNKIDKESERV----VD--------------------REEGLK-----FARK------HRCLFIECSAKTRENVQCC 165 (209)
T ss_pred hhhcccccchhccc----cc--------------------HHHHHH-----HHHh------hCcEEEEcchhhhccHHHH
Confidence 88999999543210 11 123333 3221 2344677999999999999
Q ss_pred HHHHHHHHh
Q 042025 805 FKYIREVLK 813 (844)
Q Consensus 805 F~~V~e~Ik 813 (844)
|+.+.+-|.
T Consensus 166 FeelveKIi 174 (209)
T KOG0080|consen 166 FEELVEKII 174 (209)
T ss_pred HHHHHHHHh
Confidence 998887664
No 228
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=95.58 E-value=0.062 Score=54.09 Aligned_cols=117 Identities=17% Similarity=0.157 Sum_probs=84.7
Q ss_pred CceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcE
Q 042025 645 LTKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPF 724 (844)
Q Consensus 645 ~~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpi 724 (844)
..++++||..|| ...|..-..||++.++||-|-|.+. .|+ +......++.|-++-. ..|=
T Consensus 56 ~VkLqIwDtAGq-ErFrtitstyyrgthgv~vVYDVTn-------~ES----------F~Nv~rWLeei~~ncd--sv~~ 115 (198)
T KOG0079|consen 56 RVKLQIWDTAGQ-ERFRTITSTYYRGTHGVIVVYDVTN-------GES----------FNNVKRWLEEIRNNCD--SVPK 115 (198)
T ss_pred EEEEEEeecccH-HHHHHHHHHHccCCceEEEEEECcc-------hhh----------hHhHHHHHHHHHhcCc--cccc
Confidence 689999999999 6777777779999999999988774 232 2334556666665522 5788
Q ss_pred EEEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHHHH
Q 042025 725 VLILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVDEA 804 (844)
Q Consensus 725 ILfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~ev 804 (844)
+|+.||.|..+.|. -. .++|..|-.. --+-.+-|+|.+..+++..
T Consensus 116 vLVGNK~d~~~Rrv---V~---------------------t~dAr~~A~~-----------mgie~FETSaKe~~NvE~m 160 (198)
T KOG0079|consen 116 VLVGNKNDDPERRV---VD---------------------TEDARAFALQ-----------MGIELFETSAKENENVEAM 160 (198)
T ss_pred eecccCCCCcccee---ee---------------------hHHHHHHHHh-----------cCchheehhhhhcccchHH
Confidence 99999999988642 11 1344443321 2356788999999999999
Q ss_pred HHHHHHHHhhhh
Q 042025 805 FKYIREVLKWDD 816 (844)
Q Consensus 805 F~~V~e~Ik~~~ 816 (844)
|.-|.+..+...
T Consensus 161 F~cit~qvl~~k 172 (198)
T KOG0079|consen 161 FHCITKQVLQAK 172 (198)
T ss_pred HHHHHHHHHHHH
Confidence 999988776554
No 229
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=95.49 E-value=0.034 Score=57.40 Aligned_cols=138 Identities=17% Similarity=0.286 Sum_probs=86.7
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcEE
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFV 725 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpiI 725 (844)
....+||.+|| ...-.-=..||.++.|-+.|.+-+| +-.++..+++.+.+.+. -...|.+
T Consensus 69 vr~mlWdtagq-eEfDaItkAyyrgaqa~vLVFSTTD-----------------r~SFea~~~w~~kv~~e--~~~IPtV 128 (246)
T KOG4252|consen 69 VRSMLWDTAGQ-EEFDAITKAYYRGAQASVLVFSTTD-----------------RYSFEATLEWYNKVQKE--TERIPTV 128 (246)
T ss_pred HHHHHHHhccc-hhHHHHHHHHhccccceEEEEeccc-----------------HHHHHHHHHHHHHHHHH--hccCCeE
Confidence 34568999999 4444444568999999888877764 33455666777777664 4578999
Q ss_pred EEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHHHHH
Q 042025 726 LILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVDEAF 805 (844)
Q Consensus 726 LfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~evF 805 (844)
++-||+||.+. +.+. ++ .++. +.+ .++ .+ .+-|++.+.-||-.+|
T Consensus 129 ~vqNKIDlved----s~~~----------------~~-evE~----lak---~l~-----~R--lyRtSvked~NV~~vF 173 (246)
T KOG4252|consen 129 FVQNKIDLVED----SQMD----------------KG-EVEG----LAK---KLH-----KR--LYRTSVKEDFNVMHVF 173 (246)
T ss_pred EeeccchhhHh----hhcc----------------hH-HHHH----HHH---Hhh-----hh--hhhhhhhhhhhhHHHH
Confidence 99999999985 2221 10 1222 111 111 11 3346888999999999
Q ss_pred HHHHHHHhhhhhc----ccCCCCCCCccceeccCCCC
Q 042025 806 KYIREVLKWDDEK----EDNYYGGAEDSFYSTDMSSS 838 (844)
Q Consensus 806 ~~V~e~Ik~~~~k----~~~~~~~~~~s~~~~~~~~~ 838 (844)
.|+.+-+.+.-.. +.+..+.+..+.|||-+.|+
T Consensus 174 ~YLaeK~~q~~kq~~~~~~~~q~sSsn~~~stsp~s~ 210 (246)
T KOG4252|consen 174 AYLAEKLTQQKKQSLNANERKQSSSSNSTYSTSPPST 210 (246)
T ss_pred HHHHHHHHHHHHHHhhhchhhccccCCCCccCCCCcc
Confidence 9999866544322 12223334445577666554
No 230
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=95.45 E-value=0.052 Score=57.25 Aligned_cols=37 Identities=8% Similarity=0.196 Sum_probs=27.5
Q ss_pred ceEEEEEeCCCCCCCc-------ccceeccCCccEEEEEeecccc
Q 042025 646 TKYQLIRVNAKGMNEG-------CKWVEMFEDVRVVVFCVALSDY 683 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR-------~KW~~~FedV~aIIFVVdLSDY 683 (844)
..+++||+.|+ .... +.+..++++++++++|+|.++-
T Consensus 47 ~~i~l~DtpG~-~~~~~~~~~~~~~~l~~~~~ad~il~V~D~t~~ 90 (233)
T cd01896 47 AKIQLLDLPGI-IEGAADGKGRGRQVIAVARTADLILMVLDATKP 90 (233)
T ss_pred eEEEEEECCCc-ccccccchhHHHHHHHhhccCCEEEEEecCCcc
Confidence 46889999887 2211 2455689999999999998753
No 231
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=95.32 E-value=0.037 Score=63.08 Aligned_cols=36 Identities=8% Similarity=0.019 Sum_probs=24.3
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCccEEEEEeeccc
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSD 682 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSD 682 (844)
.++.++|+.|+ ...-+.=..-...+|++|+|||..+
T Consensus 80 ~~~~liDtPGh-~~f~~~~~~~~~~aD~allVVda~~ 115 (406)
T TIGR02034 80 RKFIVADTPGH-EQYTRNMATGASTADLAVLLVDARK 115 (406)
T ss_pred eEEEEEeCCCH-HHHHHHHHHHHhhCCEEEEEEECCC
Confidence 47899999998 3321111123457899999999763
No 232
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=95.29 E-value=0.095 Score=59.41 Aligned_cols=23 Identities=17% Similarity=0.179 Sum_probs=21.1
Q ss_pred cceeeEEEeeccCCChhhHHHHH
Q 042025 426 KKVQKLLLLGLQGAGTSTIFKQA 448 (844)
Q Consensus 426 k~~iKLLLLGsgeSGKSTI~KQm 448 (844)
+..+.|.++|..++||||++.++
T Consensus 10 ~~~~~i~i~Ghvd~GKStL~~~L 32 (394)
T TIGR00485 10 KPHVNIGTIGHVDHGKTTLTAAI 32 (394)
T ss_pred CceEEEEEEeecCCCHHHHHHHH
Confidence 66789999999999999999877
No 233
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=95.28 E-value=0.011 Score=58.78 Aligned_cols=24 Identities=46% Similarity=0.764 Sum_probs=22.8
Q ss_pred cceeeEEEeeccCCChhhHHHHHH
Q 042025 426 KKVQKLLLLGLQGAGTSTIFKQAK 449 (844)
Q Consensus 426 k~~iKLLLLGsgeSGKSTI~KQmK 449 (844)
++++||||||-+.+|||||+||++
T Consensus 15 ~rEirilllGldnAGKTT~LKqL~ 38 (185)
T KOG0074|consen 15 RREIRILLLGLDNAGKTTFLKQLK 38 (185)
T ss_pred cceEEEEEEecCCCcchhHHHHHc
Confidence 678999999999999999999986
No 234
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=95.27 E-value=0.021 Score=60.18 Aligned_cols=68 Identities=13% Similarity=0.143 Sum_probs=48.4
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcEE
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFV 725 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpiI 725 (844)
..+.+||+.|+ ......-..++..+|++|+|||..+ .. +.+...++..... .+.|+|
T Consensus 73 ~~i~iiDTPG~-~~f~~~~~~~l~~aD~~ilVvD~~~-------g~-----------~~~t~~~l~~~~~----~~~p~i 129 (222)
T cd01885 73 YLINLIDSPGH-VDFSSEVTAALRLCDGALVVVDAVE-------GV-----------CVQTETVLRQALK----ERVKPV 129 (222)
T ss_pred eEEEEECCCCc-cccHHHHHHHHHhcCeeEEEEECCC-------CC-----------CHHHHHHHHHHHH----cCCCEE
Confidence 57889999999 5555555567889999999999874 10 1133444554443 247999
Q ss_pred EEecccchhhh
Q 042025 726 LILNKYDLFEE 736 (844)
Q Consensus 726 LfLNK~DLfee 736 (844)
|++||+|+...
T Consensus 130 lviNKiD~~~~ 140 (222)
T cd01885 130 LVINKIDRLIL 140 (222)
T ss_pred EEEECCCcchh
Confidence 99999998743
No 235
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=95.27 E-value=0.039 Score=53.67 Aligned_cols=53 Identities=17% Similarity=0.209 Sum_probs=33.9
Q ss_pred cccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcEEEEecccchhh
Q 042025 661 GCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFVLILNKYDLFE 735 (844)
Q Consensus 661 R~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpiILfLNK~DLfe 735 (844)
|+.|.|..+++|.||||+|.++-. .. .+ ..+.+ .+. ..+.|+|+++||.|+..
T Consensus 3 ~~~~~~i~~~aD~vl~V~D~~~~~-------~~------~~-----~~l~~-~~~---~~~~p~iiv~NK~Dl~~ 55 (156)
T cd01859 3 KRLVRRIIKESDVVLEVLDARDPE-------LT------RS-----RKLER-YVL---ELGKKLLIVLNKADLVP 55 (156)
T ss_pred HHHHHHHHhhCCEEEEEeeCCCCc-------cc------CC-----HHHHH-HHH---hCCCcEEEEEEhHHhCC
Confidence 455778888999999999987511 10 11 11111 121 12579999999999853
No 236
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=95.26 E-value=0.064 Score=53.08 Aligned_cols=122 Identities=19% Similarity=0.208 Sum_probs=79.4
Q ss_pred CCCCceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCC
Q 042025 642 PQPLTKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKD 721 (844)
Q Consensus 642 ~~~~~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~ 721 (844)
.+...++|+||..|| ...|..=..||.++++++.+-|++. ...+ |+ .+|-|.|-.+.=+. .
T Consensus 43 ~~~kvklqiwdtagq-erfrsvt~ayyrda~allllydian--kasf---dn-----~~~wlsei~ey~k~--------~ 103 (192)
T KOG0083|consen 43 DDKKVKLQIWDTAGQ-ERFRSVTHAYYRDADALLLLYDIAN--KASF---DN-----CQAWLSEIHEYAKE--------A 103 (192)
T ss_pred CCcEEEEEEeeccch-HHHhhhhHhhhcccceeeeeeeccc--chhH---HH-----HHHHHHHHHHHHHh--------h
Confidence 455789999999999 7788877789999999999988773 1110 11 23444443333222 3
Q ss_pred CcEEEEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCH
Q 042025 722 TPFVLILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTV 801 (844)
Q Consensus 722 tpiILfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I 801 (844)
+.+.|+-||+|+--|+. ++- ++ .+. ++ ..+ .+-..-|+|.+|-+|
T Consensus 104 v~l~llgnk~d~a~er~--v~~----------------dd---g~k----la----~~y------~ipfmetsaktg~nv 148 (192)
T KOG0083|consen 104 VALMLLGNKCDLAHERA--VKR----------------DD---GEK----LA----EAY------GIPFMETSAKTGFNV 148 (192)
T ss_pred HhHhhhccccccchhhc--ccc----------------ch---HHH----HH----HHH------CCCceeccccccccH
Confidence 56889999999966532 111 10 111 11 111 122567999999999
Q ss_pred HHHHHHHHHHHhhhhh
Q 042025 802 DEAFKYIREVLKWDDE 817 (844)
Q Consensus 802 ~evF~~V~e~Ik~~~~ 817 (844)
+.+|-.|-+-+++...
T Consensus 149 d~af~~ia~~l~k~~~ 164 (192)
T KOG0083|consen 149 DLAFLAIAEELKKLKM 164 (192)
T ss_pred hHHHHHHHHHHHHhcc
Confidence 9999999887765543
No 237
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=95.22 E-value=0.028 Score=66.35 Aligned_cols=67 Identities=18% Similarity=0.237 Sum_probs=47.6
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcEE
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFV 725 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpiI 725 (844)
.++.+||+.|+ .........++..+|++|||||.++= . . .....+|+.. . ..+.|+|
T Consensus 79 ~~inliDTPG~-~df~~~~~~~l~~aD~aIlVvDa~~g------v---------~---~~t~~l~~~~-~---~~~iPii 135 (526)
T PRK00741 79 CLINLLDTPGH-EDFSEDTYRTLTAVDSALMVIDAAKG------V---------E---PQTRKLMEVC-R---LRDTPIF 135 (526)
T ss_pred EEEEEEECCCc-hhhHHHHHHHHHHCCEEEEEEecCCC------C---------C---HHHHHHHHHH-H---hcCCCEE
Confidence 57999999999 55555566678999999999998741 0 0 1123444332 2 2478999
Q ss_pred EEecccchhh
Q 042025 726 LILNKYDLFE 735 (844)
Q Consensus 726 LfLNK~DLfe 735 (844)
+|+||+|+..
T Consensus 136 v~iNK~D~~~ 145 (526)
T PRK00741 136 TFINKLDRDG 145 (526)
T ss_pred EEEECCcccc
Confidence 9999999864
No 238
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=95.05 E-value=0.057 Score=62.98 Aligned_cols=39 Identities=31% Similarity=0.392 Sum_probs=29.6
Q ss_pred cccCchhhhhh---cceeeEEEeeccCCChhhHHHHHHHHhcCC
Q 042025 415 NYTTVPNYLEQ---KKVQKLLLLGLQGAGTSTIFKQAKFLYGNK 455 (844)
Q Consensus 415 ~S~~Id~~Le~---k~~iKLLLLGsgeSGKSTI~KQmKiLy~~g 455 (844)
.|.....|+.. +..++|.++|..++||||++-++ ||..+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~i~iiGhvdaGKSTL~~~L--L~~~g 52 (474)
T PRK05124 11 NEGGVEAYLHAQQHKSLLRFLTCGSVDDGKSTLIGRL--LHDTK 52 (474)
T ss_pred hhhhHHHHHhhccccCceEEEEECCCCCChHHHHHHH--HHhcC
Confidence 34455666655 67899999999999999999865 66544
No 239
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=95.04 E-value=0.028 Score=66.40 Aligned_cols=66 Identities=18% Similarity=0.227 Sum_probs=44.9
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcEE
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFV 725 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpiI 725 (844)
.++.+||+.|+ ......-..++..+|++|||||.++- . + .....+|+ ++.. .+.|+|
T Consensus 80 ~~inliDTPG~-~df~~~~~~~l~~aD~aIlVvDa~~g---v---~------------~~t~~l~~-~~~~---~~~Pii 136 (527)
T TIGR00503 80 CLVNLLDTPGH-EDFSEDTYRTLTAVDNCLMVIDAAKG---V---E------------TRTRKLME-VTRL---RDTPIF 136 (527)
T ss_pred eEEEEEECCCh-hhHHHHHHHHHHhCCEEEEEEECCCC---C---C------------HHHHHHHH-HHHh---cCCCEE
Confidence 57999999999 54444333467899999999998751 0 0 01223333 3332 468999
Q ss_pred EEecccchh
Q 042025 726 LILNKYDLF 734 (844)
Q Consensus 726 LfLNK~DLf 734 (844)
+|+||+|+.
T Consensus 137 vviNKiD~~ 145 (527)
T TIGR00503 137 TFMNKLDRD 145 (527)
T ss_pred EEEECcccc
Confidence 999999985
No 240
>PRK13351 elongation factor G; Reviewed
Probab=95.02 E-value=0.029 Score=67.98 Aligned_cols=69 Identities=14% Similarity=0.125 Sum_probs=51.1
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcEE
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFV 725 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpiI 725 (844)
.++.+||+.|+ ......|..++..+|++|+|+|.++-.+ .+...+|+.+-. .+.|++
T Consensus 73 ~~i~liDtPG~-~df~~~~~~~l~~aD~~ilVvd~~~~~~------------------~~~~~~~~~~~~----~~~p~i 129 (687)
T PRK13351 73 HRINLIDTPGH-IDFTGEVERSLRVLDGAVVVFDAVTGVQ------------------PQTETVWRQADR----YGIPRL 129 (687)
T ss_pred EEEEEEECCCc-HHHHHHHHHHHHhCCEEEEEEeCCCCCC------------------HHHHHHHHHHHh----cCCCEE
Confidence 57999999999 5666778889999999999999885111 122344444333 268999
Q ss_pred EEecccchhhhh
Q 042025 726 LILNKYDLFEEK 737 (844)
Q Consensus 726 LfLNK~DLfeeK 737 (844)
|++||+|+....
T Consensus 130 iviNK~D~~~~~ 141 (687)
T PRK13351 130 IFINKMDRVGAD 141 (687)
T ss_pred EEEECCCCCCCC
Confidence 999999998643
No 241
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=94.93 E-value=0.032 Score=67.66 Aligned_cols=67 Identities=15% Similarity=0.123 Sum_probs=49.0
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcEE
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFV 725 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpiI 725 (844)
.++.+||+.|+ ......|...+..+|++|||||.++= . . .+...++..+-. .+.|+|
T Consensus 75 ~~i~liDTPG~-~~~~~~~~~~l~~~D~~ilVvda~~g-------~--------~---~~~~~~~~~~~~----~~~p~i 131 (689)
T TIGR00484 75 HRINIIDTPGH-VDFTVEVERSLRVLDGAVAVLDAVGG-------V--------Q---PQSETVWRQANR----YEVPRI 131 (689)
T ss_pred eEEEEEECCCC-cchhHHHHHHHHHhCEEEEEEeCCCC-------C--------C---hhHHHHHHHHHH----cCCCEE
Confidence 57999999999 55556788899999999999998741 0 1 122344443332 257999
Q ss_pred EEecccchhh
Q 042025 726 LILNKYDLFE 735 (844)
Q Consensus 726 LfLNK~DLfe 735 (844)
|++||+|+..
T Consensus 132 vviNK~D~~~ 141 (689)
T TIGR00484 132 AFVNKMDKTG 141 (689)
T ss_pred EEEECCCCCC
Confidence 9999999875
No 242
>PRK14845 translation initiation factor IF-2; Provisional
Probab=94.84 E-value=0.1 Score=66.06 Aligned_cols=128 Identities=16% Similarity=0.205 Sum_probs=70.7
Q ss_pred eEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcEEE
Q 042025 647 KYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFVL 726 (844)
Q Consensus 647 ~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpiIL 726 (844)
.+.|||+.|+ ..........+..+|++|+|||.++- + ...-.+++.++. . .+.|+||
T Consensus 527 ~i~fiDTPGh-e~F~~lr~~g~~~aDivlLVVDa~~G--i-------------~~qT~e~I~~lk---~----~~iPiIV 583 (1049)
T PRK14845 527 GLLFIDTPGH-EAFTSLRKRGGSLADLAVLVVDINEG--F-------------KPQTIEAINILR---Q----YKTPFVV 583 (1049)
T ss_pred cEEEEECCCc-HHHHHHHHhhcccCCEEEEEEECccc--C-------------CHhHHHHHHHHH---H----cCCCEEE
Confidence 4899999999 55443334456789999999998741 0 111123333322 2 2579999
Q ss_pred Eecccchhh-hhhhc-cccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhh----hc-----------cCCCCcEE
Q 042025 727 ILNKYDLFE-EKVNR-VHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDL----YA-----------SLTGRKLF 789 (844)
Q Consensus 727 fLNK~DLfe-eKI~~-spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L----~~-----------s~~~Rkly 789 (844)
++||+|+.. .++.. .++. ..+. .| .+.+.+-+..+..++ .. ..-++.+-
T Consensus 584 ViNKiDL~~~~~~~~~~~~~-----~~~~-------~q--~~~~~~el~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~ 649 (1049)
T PRK14845 584 AANKIDLIPGWNISEDEPFL-----LNFN-------EQ--DQHALTELEIKLYELIGKLYELGFDADRFDRVQDFTRTVA 649 (1049)
T ss_pred EEECCCCccccccccchhhh-----hhhh-------hh--HHHHHHHHHHHHHHHhhHHHhcCcchhhhhhhhhcCCCce
Confidence 999999853 22111 1110 0010 00 122222222111111 00 00135677
Q ss_pred EEEEeecCCCCHHHHHHHHHHH
Q 042025 790 VWQARARDRVTVDEAFKYIREV 811 (844)
Q Consensus 790 vh~T~AtDte~I~evF~~V~e~ 811 (844)
+..+||.+|+||+..+.++...
T Consensus 650 iVpVSA~tGeGId~Ll~~l~~l 671 (1049)
T PRK14845 650 IVPVSAKTGEGIPELLMMVAGL 671 (1049)
T ss_pred EEEEEcCCCCCHHHHHHHHHHh
Confidence 8999999999999999887643
No 243
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=94.71 E-value=0.019 Score=57.46 Aligned_cols=26 Identities=42% Similarity=0.770 Sum_probs=23.6
Q ss_pred hhcceeeEEEeeccCCChhhHHHHHH
Q 042025 424 EQKKVQKLLLLGLQGAGTSTIFKQAK 449 (844)
Q Consensus 424 e~k~~iKLLLLGsgeSGKSTI~KQmK 449 (844)
.+++.+|||+||..+|||||++++++
T Consensus 10 ~~~~~~~ililGl~~sGKTtll~~l~ 35 (175)
T PF00025_consen 10 SKKKEIKILILGLDGSGKTTLLNRLK 35 (175)
T ss_dssp TTTSEEEEEEEESTTSSHHHHHHHHH
T ss_pred ccCcEEEEEEECCCccchHHHHHHhh
Confidence 34889999999999999999999886
No 244
>CHL00071 tufA elongation factor Tu
Probab=94.62 E-value=0.17 Score=57.77 Aligned_cols=67 Identities=21% Similarity=0.280 Sum_probs=42.7
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCc-E
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTP-F 724 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tp-i 724 (844)
..+.++|+.|+ ...-+....-...+|++|+|||..+ | . ..+.++.+..+... +.| +
T Consensus 75 ~~~~~iDtPGh-~~~~~~~~~~~~~~D~~ilVvda~~-----------g-----~--~~qt~~~~~~~~~~----g~~~i 131 (409)
T CHL00071 75 RHYAHVDCPGH-ADYVKNMITGAAQMDGAILVVSAAD-----------G-----P--MPQTKEHILLAKQV----GVPNI 131 (409)
T ss_pred eEEEEEECCCh-HHHHHHHHHHHHhCCEEEEEEECCC-----------C-----C--cHHHHHHHHHHHHc----CCCEE
Confidence 46889999998 4322222333457999999999763 1 0 12344455443322 457 7
Q ss_pred EEEecccchhh
Q 042025 725 VLILNKYDLFE 735 (844)
Q Consensus 725 ILfLNK~DLfe 735 (844)
||++||+|+..
T Consensus 132 IvvvNK~D~~~ 142 (409)
T CHL00071 132 VVFLNKEDQVD 142 (409)
T ss_pred EEEEEccCCCC
Confidence 89999999864
No 245
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=94.51 E-value=0.074 Score=63.98 Aligned_cols=36 Identities=31% Similarity=0.523 Sum_probs=27.3
Q ss_pred Cchhhhhh---cceeeEEEeeccCCChhhHHHHHHHHhcCC
Q 042025 418 TVPNYLEQ---KKVQKLLLLGLQGAGTSTIFKQAKFLYGNK 455 (844)
Q Consensus 418 ~Id~~Le~---k~~iKLLLLGsgeSGKSTI~KQmKiLy~~g 455 (844)
.|..++++ +..++|.++|..++||||++-++ +|..+
T Consensus 11 ~~~~~~~~~~~~~~~~i~iiGh~~~GKSTL~~~L--l~~~~ 49 (632)
T PRK05506 11 DILAYLAQHERKSLLRFITCGSVDDGKSTLIGRL--LYDSK 49 (632)
T ss_pred cHHHHHhhccCCCeeEEEEECCCCCChHHHHHHH--HHHhC
Confidence 45555555 66789999999999999999864 55443
No 246
>PRK00098 GTPase RsgA; Reviewed
Probab=94.49 E-value=0.19 Score=55.17 Aligned_cols=85 Identities=19% Similarity=0.248 Sum_probs=50.9
Q ss_pred CCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcEEEEecccchhhhhhhccccccccc
Q 042025 669 EDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFVLILNKYDLFEEKVNRVHLSTCEW 748 (844)
Q Consensus 669 edV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpiILfLNK~DLfeeKI~~spLs~c~~ 748 (844)
.++|.+|+|+|+.+ .+. ..+++..-+...+. .+.|++|++||.||...+
T Consensus 79 aniD~vllV~d~~~-------p~~------~~~~idr~L~~~~~-------~~ip~iIVlNK~DL~~~~----------- 127 (298)
T PRK00098 79 ANVDQAVLVFAAKE-------PDF------STDLLDRFLVLAEA-------NGIKPIIVLNKIDLLDDL----------- 127 (298)
T ss_pred ecCCEEEEEEECCC-------CCC------CHHHHHHHHHHHHH-------CCCCEEEEEEhHHcCCCH-----------
Confidence 89999999999874 111 12333333333221 468999999999985221
Q ss_pred cCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHHHHHHHHH
Q 042025 749 FNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVDEAFKYIR 809 (844)
Q Consensus 749 FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~evF~~V~ 809 (844)
+.... +...|..+ .+-++.+||.++.++++.++++.
T Consensus 128 -----------------~~~~~-~~~~~~~~-------g~~v~~vSA~~g~gi~~L~~~l~ 163 (298)
T PRK00098 128 -----------------EEARE-LLALYRAI-------GYDVLELSAKEGEGLDELKPLLA 163 (298)
T ss_pred -----------------HHHHH-HHHHHHHC-------CCeEEEEeCCCCccHHHHHhhcc
Confidence 00001 11111111 13477899999999988887765
No 247
>COG1159 Era GTPase [General function prediction only]
Probab=94.47 E-value=0.26 Score=54.45 Aligned_cols=109 Identities=19% Similarity=0.287 Sum_probs=65.2
Q ss_pred ceEEEEEeCCCCCCCccccee--------ccCCccEEEEEeeccc-ccccccCCCCCCCcccccchHHHHHHHHHHHHcC
Q 042025 646 TKYQLIRVNAKGMNEGCKWVE--------MFEDVRVVVFCVALSD-YDQMWICPESSGSGTLLQNKMIQSKELFEMMIRH 716 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~--------~FedV~aIIFVVdLSD-YDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~ 716 (844)
..+.++|+-|- ...+++-.. -+.+||.|+||||..+ +.. +...+++.+-+
T Consensus 54 ~QiIfvDTPGi-h~pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~-------------------~d~~il~~lk~- 112 (298)
T COG1159 54 AQIIFVDTPGI-HKPKHALGELMNKAARSALKDVDLILFVVDADEGWGP-------------------GDEFILEQLKK- 112 (298)
T ss_pred ceEEEEeCCCC-CCcchHHHHHHHHHHHHHhccCcEEEEEEeccccCCc-------------------cHHHHHHHHhh-
Confidence 46788899886 444433322 3568999999999875 110 11122222222
Q ss_pred CCCCCCcEEEEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeec
Q 042025 717 PCFKDTPFVLILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARAR 796 (844)
Q Consensus 717 p~f~~tpiILfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~At 796 (844)
.++|+||++||.|.+..+.. .....++. .... .-. -++..||+
T Consensus 113 ---~~~pvil~iNKID~~~~~~~-------------------------l~~~~~~~----~~~~---~f~--~ivpiSA~ 155 (298)
T COG1159 113 ---TKTPVILVVNKIDKVKPKTV-------------------------LLKLIAFL----KKLL---PFK--EIVPISAL 155 (298)
T ss_pred ---cCCCeEEEEEccccCCcHHH-------------------------HHHHHHHH----HhhC---Ccc--eEEEeecc
Confidence 46899999999998764311 01111111 1111 111 48888999
Q ss_pred CCCCHHHHHHHHHHHH
Q 042025 797 DRVTVDEAFKYIREVL 812 (844)
Q Consensus 797 Dte~I~evF~~V~e~I 812 (844)
.+.+++...+.+.+.+
T Consensus 156 ~g~n~~~L~~~i~~~L 171 (298)
T COG1159 156 KGDNVDTLLEIIKEYL 171 (298)
T ss_pred ccCCHHHHHHHHHHhC
Confidence 9999988887777654
No 248
>PRK12289 GTPase RsgA; Reviewed
Probab=94.35 E-value=0.17 Score=57.04 Aligned_cols=87 Identities=13% Similarity=0.127 Sum_probs=52.9
Q ss_pred ccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcEEEEecccchhhhhhhccccccc
Q 042025 667 MFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFVLILNKYDLFEEKVNRVHLSTC 746 (844)
Q Consensus 667 ~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpiILfLNK~DLfeeKI~~spLs~c 746 (844)
.+.++|.|++|+|+.+ .+- ...+|..-+... +-.+.|+||++||+||..+
T Consensus 86 ~~aNvD~vLlV~d~~~-------p~~------~~~~LdR~L~~a-------~~~~ip~ILVlNK~DLv~~---------- 135 (352)
T PRK12289 86 PVANADQILLVFALAE-------PPL------DPWQLSRFLVKA-------ESTGLEIVLCLNKADLVSP---------- 135 (352)
T ss_pred hhhcCCEEEEEEECCC-------CCC------CHHHHHHHHHHH-------HHCCCCEEEEEEchhcCCh----------
Confidence 5889999999999875 110 012222222211 1246899999999998531
Q ss_pred cccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHHHHHHHHHH
Q 042025 747 EWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVDEAFKYIRE 810 (844)
Q Consensus 747 ~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~evF~~V~e 810 (844)
++...+ ...|..+ .+-++++||.++.++++.++++.+
T Consensus 136 -------------------~~~~~~-~~~~~~~-------g~~v~~iSA~tg~GI~eL~~~L~~ 172 (352)
T PRK12289 136 -------------------TEQQQW-QDRLQQW-------GYQPLFISVETGIGLEALLEQLRN 172 (352)
T ss_pred -------------------HHHHHH-HHHHHhc-------CCeEEEEEcCCCCCHHHHhhhhcc
Confidence 011111 1222221 123788999999999999988864
No 249
>PRK13796 GTPase YqeH; Provisional
Probab=94.34 E-value=0.19 Score=56.78 Aligned_cols=87 Identities=23% Similarity=0.345 Sum_probs=53.2
Q ss_pred cEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcEEEEecccchhhhhhhccccccccccCC
Q 042025 672 RVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFVLILNKYDLFEEKVNRVHLSTCEWFND 751 (844)
Q Consensus 672 ~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpiILfLNK~DLfeeKI~~spLs~c~~FPD 751 (844)
..|+||||+.|+...+ ++ .++.++. +.|++|++||.||+... .
T Consensus 71 ~lIv~VVD~~D~~~s~-------------~~------~L~~~~~-----~kpviLViNK~DLl~~~-----~-------- 113 (365)
T PRK13796 71 ALVVNVVDIFDFNGSW-------------IP------GLHRFVG-----NNPVLLVGNKADLLPKS-----V-------- 113 (365)
T ss_pred cEEEEEEECccCCCch-------------hH------HHHHHhC-----CCCEEEEEEchhhCCCc-----c--------
Confidence 3799999998854332 11 1222222 57899999999996421 0
Q ss_pred CCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHHHHHHHHHHH
Q 042025 752 FSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVDEAFKYIREV 811 (844)
Q Consensus 752 F~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~evF~~V~e~ 811 (844)
+ .+.+.+|+...+..+. . +...++.+||.++.++++.++.+.+.
T Consensus 114 ---------~---~~~i~~~l~~~~k~~g--~--~~~~v~~vSAk~g~gI~eL~~~I~~~ 157 (365)
T PRK13796 114 ---------K---KNKVKNWLRQEAKELG--L--RPVDVVLISAQKGHGIDELLEAIEKY 157 (365)
T ss_pred ---------C---HHHHHHHHHHHHHhcC--C--CcCcEEEEECCCCCCHHHHHHHHHHh
Confidence 0 1233445443332211 1 11247889999999999999998765
No 250
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=94.33 E-value=0.056 Score=57.71 Aligned_cols=67 Identities=15% Similarity=0.153 Sum_probs=47.9
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcEE
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFV 725 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpiI 725 (844)
.++.+||+.|+ ......|..++..++++|+|+|.++-.+. ....+|+.+-. .+.|++
T Consensus 64 ~~i~liDtPG~-~~f~~~~~~~l~~aD~~i~Vvd~~~g~~~------------------~~~~~~~~~~~----~~~p~i 120 (268)
T cd04170 64 HKINLIDTPGY-ADFVGETRAALRAADAALVVVSAQSGVEV------------------GTEKLWEFADE----AGIPRI 120 (268)
T ss_pred EEEEEEECcCH-HHHHHHHHHHHHHCCEEEEEEeCCCCCCH------------------HHHHHHHHHHH----cCCCEE
Confidence 57899999998 44456688889999999999998852111 22334443322 357999
Q ss_pred EEecccchhh
Q 042025 726 LILNKYDLFE 735 (844)
Q Consensus 726 LfLNK~DLfe 735 (844)
+|+||+|+..
T Consensus 121 ivvNK~D~~~ 130 (268)
T cd04170 121 IFINKMDRER 130 (268)
T ss_pred EEEECCccCC
Confidence 9999999764
No 251
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=94.12 E-value=0.18 Score=58.87 Aligned_cols=116 Identities=14% Similarity=0.118 Sum_probs=66.8
Q ss_pred eEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcEEE
Q 042025 647 KYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFVL 726 (844)
Q Consensus 647 ~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpiIL 726 (844)
.+.++|+.|+ ...-+-...-...+|++|+|||..+-. . .....|.+.+.+. +.-.++||
T Consensus 118 ~i~~IDtPGH-~~fi~~m~~g~~~~D~alLVVda~~g~--~------------~~qT~ehl~i~~~------lgi~~iIV 176 (460)
T PTZ00327 118 HVSFVDCPGH-DILMATMLNGAAVMDAALLLIAANESC--P------------QPQTSEHLAAVEI------MKLKHIII 176 (460)
T ss_pred eEeeeeCCCH-HHHHHHHHHHHhhCCEEEEEEECCCCc--c------------chhhHHHHHHHHH------cCCCcEEE
Confidence 5789999998 433222233345789999999987410 0 0011122222211 22247999
Q ss_pred EecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHHHHHH
Q 042025 727 ILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVDEAFK 806 (844)
Q Consensus 727 fLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~evF~ 806 (844)
++||+|+.... | .++..+.|...+.... ...+-+..+||++++||+..++
T Consensus 177 vlNKiDlv~~~----------~----------------~~~~~~ei~~~l~~~~----~~~~~iipVSA~~G~nI~~Ll~ 226 (460)
T PTZ00327 177 LQNKIDLVKEA----------Q----------------AQDQYEEIRNFVKGTI----ADNAPIIPISAQLKYNIDVVLE 226 (460)
T ss_pred EEecccccCHH----------H----------------HHHHHHHHHHHHHhhc----cCCCeEEEeeCCCCCCHHHHHH
Confidence 99999986420 0 1122222332222211 1245588999999999999998
Q ss_pred HHHHHHh
Q 042025 807 YIREVLK 813 (844)
Q Consensus 807 ~V~e~Ik 813 (844)
+|.+.+.
T Consensus 227 ~L~~~lp 233 (460)
T PTZ00327 227 YICTQIP 233 (460)
T ss_pred HHHhhCC
Confidence 8887654
No 252
>PRK12735 elongation factor Tu; Reviewed
Probab=94.02 E-value=0.26 Score=56.05 Aligned_cols=25 Identities=16% Similarity=0.157 Sum_probs=22.0
Q ss_pred hhcceeeEEEeeccCCChhhHHHHH
Q 042025 424 EQKKVQKLLLLGLQGAGTSTIFKQA 448 (844)
Q Consensus 424 e~k~~iKLLLLGsgeSGKSTI~KQm 448 (844)
+.+..++|.++|..++||||++..+
T Consensus 8 ~~~~~~~i~iiGhvd~GKSTL~~~L 32 (396)
T PRK12735 8 RTKPHVNVGTIGHVDHGKTTLTAAI 32 (396)
T ss_pred CCCCeEEEEEECcCCCCHHHHHHHH
Confidence 4466889999999999999999976
No 253
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=93.96 E-value=0.3 Score=54.55 Aligned_cols=114 Identities=24% Similarity=0.289 Sum_probs=72.0
Q ss_pred eEEEEEeCCC--C----CCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCC
Q 042025 647 KYQLIRVNAK--G----MNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFK 720 (844)
Q Consensus 647 ~~~liDVGGQ--~----rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~ 720 (844)
.+++=|+-|- + +...-+.+...|-++.++||||+|.+...- + ....--|.+-+++|+.- +.
T Consensus 245 q~tVADiPGiI~GAh~nkGlG~~FLrHiER~~~l~fVvD~s~~~~~~--p------~~~~~lL~~ELe~yek~-----L~ 311 (366)
T KOG1489|consen 245 QITVADIPGIIEGAHMNKGLGYKFLRHIERCKGLLFVVDLSGKQLRN--P------WQQLQLLIEELELYEKG-----LA 311 (366)
T ss_pred eeEeccCccccccccccCcccHHHHHHHHhhceEEEEEECCCcccCC--H------HHHHHHHHHHHHHHhhh-----hc
Confidence 3888888653 1 223346667788899999999999752210 0 00122334445555543 55
Q ss_pred CCcEEEEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCC
Q 042025 721 DTPFVLILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVT 800 (844)
Q Consensus 721 ~tpiILfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~ 800 (844)
+.|.++++||+|+.+. + .+++..-+.++.+ -+|...||..+++
T Consensus 312 ~rp~liVaNKiD~~ea-----------------------------e--~~~l~~L~~~lq~------~~V~pvsA~~~eg 354 (366)
T KOG1489|consen 312 DRPALIVANKIDLPEA-----------------------------E--KNLLSSLAKRLQN------PHVVPVSAKSGEG 354 (366)
T ss_pred cCceEEEEeccCchhH-----------------------------H--HHHHHHHHHHcCC------CcEEEeeeccccc
Confidence 6799999999999653 0 1122222233321 2789999999999
Q ss_pred HHHHHHHHHH
Q 042025 801 VDEAFKYIRE 810 (844)
Q Consensus 801 I~evF~~V~e 810 (844)
+.+.++-+++
T Consensus 355 l~~ll~~lr~ 364 (366)
T KOG1489|consen 355 LEELLNGLRE 364 (366)
T ss_pred hHHHHHHHhh
Confidence 9998887765
No 254
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=93.92 E-value=0.041 Score=50.34 Aligned_cols=20 Identities=25% Similarity=0.614 Sum_probs=18.4
Q ss_pred eEEEeeccCCChhhHHHHHH
Q 042025 430 KLLLLGLQGAGTSTIFKQAK 449 (844)
Q Consensus 430 KLLLLGsgeSGKSTI~KQmK 449 (844)
||+++|..+|||||+++++.
T Consensus 1 kI~V~G~~g~GKTsLi~~l~ 20 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLC 20 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHh
Confidence 89999999999999998764
No 255
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=93.85 E-value=0.048 Score=50.36 Aligned_cols=24 Identities=29% Similarity=0.447 Sum_probs=20.7
Q ss_pred eEEEeeccCCChhhHHHHHHHHhc
Q 042025 430 KLLLLGLQGAGTSTIFKQAKFLYG 453 (844)
Q Consensus 430 KLLLLGsgeSGKSTI~KQmKiLy~ 453 (844)
+|+|.|.+||||||+.|++.=.++
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~ 24 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLG 24 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHHC
Confidence 589999999999999999876553
No 256
>PRK12739 elongation factor G; Reviewed
Probab=93.67 E-value=0.068 Score=64.97 Aligned_cols=68 Identities=13% Similarity=0.142 Sum_probs=50.3
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcEE
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFV 725 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpiI 725 (844)
.++.++|+.|+ ......|......+|++|||||.++ | . ..+...++..+.. .+.|+|
T Consensus 73 ~~i~liDTPG~-~~f~~e~~~al~~~D~~ilVvDa~~-----------g-----~--~~qt~~i~~~~~~----~~~p~i 129 (691)
T PRK12739 73 HRINIIDTPGH-VDFTIEVERSLRVLDGAVAVFDAVS-----------G-----V--EPQSETVWRQADK----YGVPRI 129 (691)
T ss_pred EEEEEEcCCCH-HHHHHHHHHHHHHhCeEEEEEeCCC-----------C-----C--CHHHHHHHHHHHH----cCCCEE
Confidence 57999999998 5566678888999999999999774 1 0 1123455555443 357999
Q ss_pred EEecccchhhh
Q 042025 726 LILNKYDLFEE 736 (844)
Q Consensus 726 LfLNK~DLfee 736 (844)
||+||+|+..+
T Consensus 130 v~iNK~D~~~~ 140 (691)
T PRK12739 130 VFVNKMDRIGA 140 (691)
T ss_pred EEEECCCCCCC
Confidence 99999998853
No 257
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=93.60 E-value=0.051 Score=53.65 Aligned_cols=25 Identities=28% Similarity=0.510 Sum_probs=22.5
Q ss_pred hcceeeEEEeeccCCChhhHHHHHH
Q 042025 425 QKKVQKLLLLGLQGAGTSTIFKQAK 449 (844)
Q Consensus 425 ~k~~iKLLLLGsgeSGKSTI~KQmK 449 (844)
|++.+|++|||.+++|||||++++.
T Consensus 1 ~~~~~kv~~vG~~~vGKTsli~~~~ 25 (169)
T cd01892 1 QRNVFLCFVLGAKGSGKSALLRAFL 25 (169)
T ss_pred CCeEEEEEEECCCCCcHHHHHHHHh
Confidence 4678999999999999999999863
No 258
>PLN03127 Elongation factor Tu; Provisional
Probab=93.59 E-value=0.61 Score=54.25 Aligned_cols=29 Identities=14% Similarity=0.188 Sum_probs=23.8
Q ss_pred hhhhhhcceeeEEEeeccCCChhhHHHHH
Q 042025 420 PNYLEQKKVQKLLLLGLQGAGTSTIFKQA 448 (844)
Q Consensus 420 d~~Le~k~~iKLLLLGsgeSGKSTI~KQm 448 (844)
...-..+..+.|.++|..++||||++..+
T Consensus 53 ~~~~~~k~~~ni~iiGhvd~GKSTL~~~L 81 (447)
T PLN03127 53 ATFTRTKPHVNVGTIGHVDHGKTTLTAAI 81 (447)
T ss_pred hhhhcCCceEEEEEECcCCCCHHHHHHHH
Confidence 33334477899999999999999999975
No 259
>PRK08118 topology modulation protein; Reviewed
Probab=93.56 E-value=0.046 Score=54.87 Aligned_cols=25 Identities=32% Similarity=0.503 Sum_probs=21.3
Q ss_pred eeEEEeeccCCChhhHHHHHHHHhc
Q 042025 429 QKLLLLGLQGAGTSTIFKQAKFLYG 453 (844)
Q Consensus 429 iKLLLLGsgeSGKSTI~KQmKiLy~ 453 (844)
.||+++|++||||||+.|++--.++
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~ 26 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLN 26 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3899999999999999998875444
No 260
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=93.39 E-value=0.51 Score=58.42 Aligned_cols=106 Identities=12% Similarity=0.136 Sum_probs=64.2
Q ss_pred ceEEEEEeCCCCCCCc---------cc-ceecc--CCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHH
Q 042025 646 TKYQLIRVNAKGMNEG---------CK-WVEMF--EDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMM 713 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR---------~K-W~~~F--edV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI 713 (844)
.+++++|+.|+ .+.. .+ +.+++ +++|+||+|+|.++.+ . .+.++..+
T Consensus 50 ~~i~lvDtPG~-ysl~~~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~le---------------r-----~l~l~~ql 108 (772)
T PRK09554 50 HQVTLVDLPGT-YSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLE---------------R-----NLYLTLQL 108 (772)
T ss_pred eEEEEEECCCc-cccccccccccHHHHHHHHHHhccCCCEEEEEecCCcch---------------h-----hHHHHHHH
Confidence 47899999998 4322 11 22332 4799999999987521 1 12334444
Q ss_pred HcCCCCCCCcEEEEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEE
Q 042025 714 IRHPCFKDTPFVLILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQA 793 (844)
Q Consensus 714 ~n~p~f~~tpiILfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T 793 (844)
.. .+.|+++++||+|+.+++ .+. .. .+-+.+++ + +-+..+
T Consensus 109 ~e----~giPvIvVlNK~Dl~~~~----~i~---------------------id-~~~L~~~L--------G--~pVvpi 148 (772)
T PRK09554 109 LE----LGIPCIVALNMLDIAEKQ----NIR---------------------ID-IDALSARL--------G--CPVIPL 148 (772)
T ss_pred HH----cCCCEEEEEEchhhhhcc----CcH---------------------HH-HHHHHHHh--------C--CCEEEE
Confidence 33 258999999999986431 000 00 01121111 1 226678
Q ss_pred eecCCCCHHHHHHHHHHHH
Q 042025 794 RARDRVTVDEAFKYIREVL 812 (844)
Q Consensus 794 ~AtDte~I~evF~~V~e~I 812 (844)
+|.+++++++.++.+.+..
T Consensus 149 SA~~g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 149 VSTRGRGIEALKLAIDRHQ 167 (772)
T ss_pred EeecCCCHHHHHHHHHHhh
Confidence 9999999988888887664
No 261
>PRK07261 topology modulation protein; Provisional
Probab=93.28 E-value=0.055 Score=54.41 Aligned_cols=21 Identities=29% Similarity=0.618 Sum_probs=19.1
Q ss_pred eeEEEeeccCCChhhHHHHHH
Q 042025 429 QKLLLLGLQGAGTSTIFKQAK 449 (844)
Q Consensus 429 iKLLLLGsgeSGKSTI~KQmK 449 (844)
.||+++|++||||||+.+++-
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~ 21 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLS 21 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHH
Confidence 379999999999999999874
No 262
>PRK00049 elongation factor Tu; Reviewed
Probab=93.26 E-value=0.52 Score=53.69 Aligned_cols=25 Identities=16% Similarity=0.157 Sum_probs=22.1
Q ss_pred hhcceeeEEEeeccCCChhhHHHHH
Q 042025 424 EQKKVQKLLLLGLQGAGTSTIFKQA 448 (844)
Q Consensus 424 e~k~~iKLLLLGsgeSGKSTI~KQm 448 (844)
+.+..+.|.++|..++||||++.++
T Consensus 8 ~~~~~~ni~iiGhvd~GKSTL~~~L 32 (396)
T PRK00049 8 RTKPHVNVGTIGHVDHGKTTLTAAI 32 (396)
T ss_pred CCCCEEEEEEEeECCCCHHHHHHHH
Confidence 3466889999999999999999987
No 263
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=93.23 E-value=0.19 Score=55.13 Aligned_cols=129 Identities=22% Similarity=0.345 Sum_probs=76.0
Q ss_pred ceEEEEEeCCCCCCCcccceec-------cC--CccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcC
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEM-------FE--DVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRH 716 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~-------Fe--dV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~ 716 (844)
+++.++|..|| .|--.|..- |. --+.|+||||... . .+ .+--| -.+..-.+|+-
T Consensus 116 ~~~~liDTPGQ--IE~FtWSAsGsIIte~lass~ptvv~YvvDt~r---------s-~~---p~tFM-SNMlYAcSily- 178 (366)
T KOG1532|consen 116 FDYVLIDTPGQ--IEAFTWSASGSIITETLASSFPTVVVYVVDTPR---------S-TS---PTTFM-SNMLYACSILY- 178 (366)
T ss_pred cCEEEEcCCCc--eEEEEecCCccchHhhHhhcCCeEEEEEecCCc---------C-CC---chhHH-HHHHHHHHHHH-
Confidence 46888888888 455566531 11 2478999999763 1 11 11111 11222223332
Q ss_pred CCCCCCcEEEEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHH-----HHHHH-------HHhhhccCC
Q 042025 717 PCFKDTPFVLILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYY-----YVAMK-------FKDLYASLT 784 (844)
Q Consensus 717 p~f~~tpiILfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~-----YI~~K-------Fl~L~~s~~ 784 (844)
-.+.|+|++|||.|+-...+. . +|-.||.. .++|.+ |+... +...+
T Consensus 179 --ktklp~ivvfNK~Dv~d~~fa-----~-eWm~DfE~----------FqeAl~~~~~~y~s~l~~SmSL~leeFY---- 236 (366)
T KOG1532|consen 179 --KTKLPFIVVFNKTDVSDSEFA-----L-EWMTDFEA----------FQEALNEAESSYMSNLTRSMSLMLEEFY---- 236 (366)
T ss_pred --hccCCeEEEEecccccccHHH-----H-HHHHHHHH----------HHHHHHhhccchhHHhhhhHHHHHHHHH----
Confidence 135799999999999775432 2 67777753 223322 22211 11122
Q ss_pred CCcEEEEEEeecCCCCHHHHHHHHHHHHhh
Q 042025 785 GRKLFVWQARARDRVTVDEAFKYIREVLKW 814 (844)
Q Consensus 785 ~Rklyvh~T~AtDte~I~evF~~V~e~Ik~ 814 (844)
+.+-+.-+++.+|.|.+..|..|.+.+..
T Consensus 237 -~~lrtv~VSs~tG~G~ddf~~av~~~vdE 265 (366)
T KOG1532|consen 237 -RSLRTVGVSSVTGEGFDDFFTAVDESVDE 265 (366)
T ss_pred -hhCceEEEecccCCcHHHHHHHHHHHHHH
Confidence 45567788999999999999998876543
No 264
>COG1160 Predicted GTPases [General function prediction only]
Probab=93.22 E-value=0.15 Score=58.92 Aligned_cols=107 Identities=21% Similarity=0.289 Sum_probs=65.5
Q ss_pred ceEEEEEeCCCCC-C-------CcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCC
Q 042025 646 TKYQLIRVNAKGM-N-------EGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHP 717 (844)
Q Consensus 646 ~~~~liDVGGQ~r-s-------eR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p 717 (844)
..|.++|+||--. . .+.+=...++.+|+||||||.-+ | .+- +-.. +-.++.
T Consensus 51 ~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~-----------G-----it~--~D~~-ia~~Lr-- 109 (444)
T COG1160 51 REFILIDTGGLDDGDEDELQELIREQALIAIEEADVILFVVDGRE-----------G-----ITP--ADEE-IAKILR-- 109 (444)
T ss_pred ceEEEEECCCCCcCCchHHHHHHHHHHHHHHHhCCEEEEEEeCCC-----------C-----CCH--HHHH-HHHHHH--
Confidence 4699999999721 1 11222235678999999999653 0 110 1111 222222
Q ss_pred CCCCCcEEEEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecC
Q 042025 718 CFKDTPFVLILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARD 797 (844)
Q Consensus 718 ~f~~tpiILfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtD 797 (844)
-.+.|+||++||.|-.... +.+.+ |-.|-- + -++.+||..
T Consensus 110 -~~~kpviLvvNK~D~~~~e----------------------------~~~~e-----fyslG~---g---~~~~ISA~H 149 (444)
T COG1160 110 -RSKKPVILVVNKIDNLKAE----------------------------ELAYE-----FYSLGF---G---EPVPISAEH 149 (444)
T ss_pred -hcCCCEEEEEEcccCchhh----------------------------hhHHH-----HHhcCC---C---CceEeehhh
Confidence 2358999999999986420 11222 223321 1 167789999
Q ss_pred CCCHHHHHHHHHHHHh
Q 042025 798 RVTVDEAFKYIREVLK 813 (844)
Q Consensus 798 te~I~evF~~V~e~Ik 813 (844)
+.|+...+++|.+.+-
T Consensus 150 g~Gi~dLld~v~~~l~ 165 (444)
T COG1160 150 GRGIGDLLDAVLELLP 165 (444)
T ss_pred ccCHHHHHHHHHhhcC
Confidence 9999999999998873
No 265
>PLN03126 Elongation factor Tu; Provisional
Probab=93.22 E-value=0.3 Score=57.26 Aligned_cols=67 Identities=21% Similarity=0.270 Sum_probs=40.8
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCc-E
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTP-F 724 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tp-i 724 (844)
.++.++|+.|+ ...-+.-..-...+|++|+|||..+ | -+..+++.+..+... +.| +
T Consensus 144 ~~i~liDtPGh-~~f~~~~~~g~~~aD~ailVVda~~-----------G-------~~~qt~e~~~~~~~~----gi~~i 200 (478)
T PLN03126 144 RHYAHVDCPGH-ADYVKNMITGAAQMDGAILVVSGAD-----------G-------PMPQTKEHILLAKQV----GVPNM 200 (478)
T ss_pred cEEEEEECCCH-HHHHHHHHHHHhhCCEEEEEEECCC-----------C-------CcHHHHHHHHHHHHc----CCCeE
Confidence 47899999998 3321111112335799999999764 1 012334444433332 456 8
Q ss_pred EEEecccchhh
Q 042025 725 VLILNKYDLFE 735 (844)
Q Consensus 725 ILfLNK~DLfe 735 (844)
||++||+|+..
T Consensus 201 IvvvNK~Dl~~ 211 (478)
T PLN03126 201 VVFLNKQDQVD 211 (478)
T ss_pred EEEEecccccC
Confidence 89999999853
No 266
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=93.14 E-value=0.59 Score=52.70 Aligned_cols=121 Identities=19% Similarity=0.284 Sum_probs=74.1
Q ss_pred eEEEEEeCCC------CCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcC-CCC
Q 042025 647 KYQLIRVNAK------GMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRH-PCF 719 (844)
Q Consensus 647 ~~~liDVGGQ------~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~-p~f 719 (844)
.|.|=|+-|- +....-..+...+-+..+++|||++..|. .+=.++-..+-.++-.. +.|
T Consensus 208 sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~vL~hviD~s~~~~--------------~dp~~~~~~i~~EL~~Y~~~L 273 (369)
T COG0536 208 SFVVADIPGLIEGASEGVGLGLRFLRHIERTRVLLHVIDLSPIDG--------------RDPIEDYQTIRNELEKYSPKL 273 (369)
T ss_pred cEEEecCcccccccccCCCccHHHHHHHHhhheeEEEEecCcccC--------------CCHHHHHHHHHHHHHHhhHHh
Confidence 5778888643 12233456667788999999999997443 12222333333333332 667
Q ss_pred CCCcEEEEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEE-EEeecCC
Q 042025 720 KDTPFVLILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVW-QARARDR 798 (844)
Q Consensus 720 ~~tpiILfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh-~T~AtDt 798 (844)
.+.|.+|++||+|+... +...+...+++.+. ..|... +.||.++
T Consensus 274 ~~K~~ivv~NKiD~~~~-------------------------~e~~~~~~~~l~~~----------~~~~~~~~ISa~t~ 318 (369)
T COG0536 274 AEKPRIVVLNKIDLPLD-------------------------EEELEELKKALAEA----------LGWEVFYLISALTR 318 (369)
T ss_pred ccCceEEEEeccCCCcC-------------------------HHHHHHHHHHHHHh----------cCCCcceeeehhcc
Confidence 88999999999995431 00022222333221 112222 2999999
Q ss_pred CCHHHHHHHHHHHHhhhh
Q 042025 799 VTVDEAFKYIREVLKWDD 816 (844)
Q Consensus 799 e~I~evF~~V~e~Ik~~~ 816 (844)
++++..+..+.+.+....
T Consensus 319 ~g~~~L~~~~~~~l~~~~ 336 (369)
T COG0536 319 EGLDELLRALAELLEETK 336 (369)
T ss_pred cCHHHHHHHHHHHHHHhh
Confidence 999999999999886664
No 267
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=93.08 E-value=0.066 Score=53.14 Aligned_cols=24 Identities=42% Similarity=0.685 Sum_probs=21.3
Q ss_pred cceeeEEEeeccCCChhhHHHHHH
Q 042025 426 KKVQKLLLLGLQGAGTSTIFKQAK 449 (844)
Q Consensus 426 k~~iKLLLLGsgeSGKSTI~KQmK 449 (844)
.+..||+++|.++||||||++++.
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~ 40 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLK 40 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
Confidence 457899999999999999999764
No 268
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=93.07 E-value=0.06 Score=55.02 Aligned_cols=24 Identities=38% Similarity=0.528 Sum_probs=19.8
Q ss_pred eeEEEeeccCCChhhHHHHHHHHh
Q 042025 429 QKLLLLGLQGAGTSTIFKQAKFLY 452 (844)
Q Consensus 429 iKLLLLGsgeSGKSTI~KQmKiLy 452 (844)
.||++||++||||||+.|++-=.+
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 379999999999999998764333
No 269
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=93.00 E-value=0.67 Score=54.94 Aligned_cols=112 Identities=16% Similarity=0.141 Sum_probs=76.4
Q ss_pred CceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcE
Q 042025 645 LTKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPF 724 (844)
Q Consensus 645 ~~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpi 724 (844)
...+.+||.-|+ -..+---.+-..-|+++|.|||.+. | -+.+++.-|.--+.. +..+
T Consensus 124 ~ylLNLIDTPGH-vDFs~EVsRslaac~G~lLvVDA~q-----------G-------vqAQT~anf~lAfe~----~L~i 180 (650)
T KOG0462|consen 124 SYLLNLIDTPGH-VDFSGEVSRSLAACDGALLVVDASQ-----------G-------VQAQTVANFYLAFEA----GLAI 180 (650)
T ss_pred ceEEEeecCCCc-ccccceehehhhhcCceEEEEEcCc-----------C-------chHHHHHHHHHHHHc----CCeE
Confidence 467899999999 5666555566677999999999884 2 233444445544442 5679
Q ss_pred EEEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHHHH
Q 042025 725 VLILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVDEA 804 (844)
Q Consensus 725 ILfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~ev 804 (844)
|.++||+|+..+. .+++..-|.+.|- +. .. -+.++||..|.++.++
T Consensus 181 IpVlNKIDlp~ad---------------------------pe~V~~q~~~lF~-~~---~~---~~i~vSAK~G~~v~~l 226 (650)
T KOG0462|consen 181 IPVLNKIDLPSAD---------------------------PERVENQLFELFD-IP---PA---EVIYVSAKTGLNVEEL 226 (650)
T ss_pred EEeeeccCCCCCC---------------------------HHHHHHHHHHHhc-CC---cc---ceEEEEeccCccHHHH
Confidence 9999999997652 2233333444442 21 12 3677899999999999
Q ss_pred HHHHHHHHh
Q 042025 805 FKYIREVLK 813 (844)
Q Consensus 805 F~~V~e~Ik 813 (844)
|++|.+.|-
T Consensus 227 L~AII~rVP 235 (650)
T KOG0462|consen 227 LEAIIRRVP 235 (650)
T ss_pred HHHHHhhCC
Confidence 998887763
No 270
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=92.98 E-value=0.071 Score=49.08 Aligned_cols=22 Identities=23% Similarity=0.406 Sum_probs=19.5
Q ss_pred eeeEEEeeccCCChhhHHHHHH
Q 042025 428 VQKLLLLGLQGAGTSTIFKQAK 449 (844)
Q Consensus 428 ~iKLLLLGsgeSGKSTI~KQmK 449 (844)
.+||+|+|..+|||||++.++.
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~ 22 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLL 22 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHh
Confidence 3699999999999999988763
No 271
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=92.95 E-value=0.075 Score=51.63 Aligned_cols=24 Identities=42% Similarity=0.706 Sum_probs=21.3
Q ss_pred cceeeEEEeeccCCChhhHHHHHH
Q 042025 426 KKVQKLLLLGLQGAGTSTIFKQAK 449 (844)
Q Consensus 426 k~~iKLLLLGsgeSGKSTI~KQmK 449 (844)
.+.+|++++|.+++|||||++++.
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~ 35 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLA 35 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHh
Confidence 447899999999999999999873
No 272
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=92.91 E-value=0.072 Score=50.46 Aligned_cols=22 Identities=32% Similarity=0.418 Sum_probs=19.6
Q ss_pred eeeEEEeeccCCChhhHHHHHH
Q 042025 428 VQKLLLLGLQGAGTSTIFKQAK 449 (844)
Q Consensus 428 ~iKLLLLGsgeSGKSTI~KQmK 449 (844)
.+||+++|..++|||||++++.
T Consensus 1 ~~ki~iiG~~~vGKTsl~~~~~ 22 (162)
T cd04138 1 EYKLVVVGAGGVGKSALTIQLI 22 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3699999999999999998764
No 273
>COG1160 Predicted GTPases [General function prediction only]
Probab=92.85 E-value=1.8 Score=50.37 Aligned_cols=118 Identities=21% Similarity=0.239 Sum_probs=71.0
Q ss_pred ceEEEEEeCCCCCCCcccc--eecc---------CCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHH
Q 042025 646 TKYQLIRVNAKGMNEGCKW--VEMF---------EDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMI 714 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW--~~~F---------edV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~ 714 (844)
.+|.++|.-|-+ .-.+.- ...| +.++.++.|+|.++ .. .++-+.+-.-+.
T Consensus 226 ~~~~liDTAGiR-rk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~--------~~----------~~qD~~ia~~i~ 286 (444)
T COG1160 226 RKYVLIDTAGIR-RKGKITESVEKYSVARTLKAIERADVVLLVIDATE--------GI----------SEQDLRIAGLIE 286 (444)
T ss_pred eEEEEEECCCCC-cccccccceEEEeehhhHhHHhhcCEEEEEEECCC--------Cc----------hHHHHHHHHHHH
Confidence 589999999983 211111 1122 24788999999874 10 112233334444
Q ss_pred cCCCCCCCcEEEEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEe
Q 042025 715 RHPCFKDTPFVLILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQAR 794 (844)
Q Consensus 715 n~p~f~~tpiILfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~ 794 (844)
+ .+.++++++||.|+.++. ... .+...+=|..+|.-+. ---++++|
T Consensus 287 ~----~g~~~vIvvNKWDl~~~~--~~~----------------------~~~~k~~i~~~l~~l~------~a~i~~iS 332 (444)
T COG1160 287 E----AGRGIVIVVNKWDLVEED--EAT----------------------MEEFKKKLRRKLPFLD------FAPIVFIS 332 (444)
T ss_pred H----cCCCeEEEEEccccCCch--hhH----------------------HHHHHHHHHHHhcccc------CCeEEEEE
Confidence 4 367999999999998740 000 1222222333333222 12289999
Q ss_pred ecCCCCHHHHHHHHHHHHhhhh
Q 042025 795 ARDRVTVDEAFKYIREVLKWDD 816 (844)
Q Consensus 795 AtDte~I~evF~~V~e~Ik~~~ 816 (844)
|..+.++...|+++.++...-.
T Consensus 333 A~~~~~i~~l~~~i~~~~~~~~ 354 (444)
T COG1160 333 ALTGQGLDKLFEAIKEIYECAT 354 (444)
T ss_pred ecCCCChHHHHHHHHHHHHHhc
Confidence 9999999999999998765444
No 274
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=92.79 E-value=0.073 Score=49.61 Aligned_cols=21 Identities=24% Similarity=0.499 Sum_probs=19.2
Q ss_pred eeEEEeeccCCChhhHHHHHH
Q 042025 429 QKLLLLGLQGAGTSTIFKQAK 449 (844)
Q Consensus 429 iKLLLLGsgeSGKSTI~KQmK 449 (844)
+||+++|..+||||||+.++.
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~ 21 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFV 21 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 589999999999999999963
No 275
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=92.77 E-value=0.073 Score=51.11 Aligned_cols=21 Identities=24% Similarity=0.544 Sum_probs=19.1
Q ss_pred eeEEEeeccCCChhhHHHHHH
Q 042025 429 QKLLLLGLQGAGTSTIFKQAK 449 (844)
Q Consensus 429 iKLLLLGsgeSGKSTI~KQmK 449 (844)
+|++++|.+++|||||+.++.
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~ 21 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFV 21 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 589999999999999999863
No 276
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=92.69 E-value=0.075 Score=51.18 Aligned_cols=20 Identities=15% Similarity=0.336 Sum_probs=18.8
Q ss_pred eeEEEeeccCCChhhHHHHH
Q 042025 429 QKLLLLGLQGAGTSTIFKQA 448 (844)
Q Consensus 429 iKLLLLGsgeSGKSTI~KQm 448 (844)
+||+++|..++|||||++++
T Consensus 1 iki~i~G~~~~GKSsli~~l 20 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISY 20 (171)
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 59999999999999999986
No 277
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=92.65 E-value=0.42 Score=55.45 Aligned_cols=116 Identities=14% Similarity=0.075 Sum_probs=64.3
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCccEEEEEeeccc--ccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCC-
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSD--YDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDT- 722 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSD--YDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~t- 722 (844)
..+.++|+.|+ ...-+........+|++|+|||.++ |..-. +.-..+++.+.-+.. .+.
T Consensus 85 ~~i~lIDtPGh-~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~-------------~~~~qT~eh~~~~~~----~gi~ 146 (446)
T PTZ00141 85 YYFTIIDAPGH-RDFIKNMITGTSQADVAILVVASTAGEFEAGI-------------SKDGQTREHALLAFT----LGVK 146 (446)
T ss_pred eEEEEEECCCh-HHHHHHHHHhhhhcCEEEEEEEcCCCceeccc-------------CCCccHHHHHHHHHH----cCCC
Confidence 57899999999 5544444555668999999999874 11000 000122333332211 234
Q ss_pred cEEEEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHH
Q 042025 723 PFVLILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVD 802 (844)
Q Consensus 723 piILfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~ 802 (844)
.+|+++||+|.... +|. +..++++.+-|...|..+- .....+.+..+||++++||.
T Consensus 147 ~iiv~vNKmD~~~~--------------~~~--------~~~~~~i~~~i~~~l~~~g--~~~~~~~~ipiSa~~g~ni~ 202 (446)
T PTZ00141 147 QMIVCINKMDDKTV--------------NYS--------QERYDEIKKEVSAYLKKVG--YNPEKVPFIPISGWQGDNMI 202 (446)
T ss_pred eEEEEEEccccccc--------------hhh--------HHHHHHHHHHHHHHHHhcC--CCcccceEEEeecccCCCcc
Confidence 47899999995321 000 0112333333443333321 11235778999999999985
Q ss_pred H
Q 042025 803 E 803 (844)
Q Consensus 803 e 803 (844)
+
T Consensus 203 ~ 203 (446)
T PTZ00141 203 E 203 (446)
T ss_pred c
Confidence 3
No 278
>PLN00043 elongation factor 1-alpha; Provisional
Probab=92.62 E-value=0.59 Score=54.33 Aligned_cols=36 Identities=6% Similarity=-0.042 Sum_probs=28.0
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCccEEEEEeeccc
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSD 682 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSD 682 (844)
..+.++|+.|+ ....+.=......+|+.|+|||..+
T Consensus 85 ~~i~liDtPGh-~df~~~~~~g~~~aD~aIlVVda~~ 120 (447)
T PLN00043 85 YYCTVIDAPGH-RDFIKNMITGTSQADCAVLIIDSTT 120 (447)
T ss_pred EEEEEEECCCH-HHHHHHHHhhhhhccEEEEEEEccc
Confidence 57999999999 4444444456678999999999885
No 279
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=92.56 E-value=0.1 Score=45.06 Aligned_cols=23 Identities=26% Similarity=0.431 Sum_probs=20.3
Q ss_pred EEEeeccCCChhhHHHHHHHHhc
Q 042025 431 LLLLGLQGAGTSTIFKQAKFLYG 453 (844)
Q Consensus 431 LLLLGsgeSGKSTI~KQmKiLy~ 453 (844)
.||.|..|||||||+..++.+.-
T Consensus 26 tli~G~nGsGKSTllDAi~~~L~ 48 (62)
T PF13555_consen 26 TLITGPNGSGKSTLLDAIQTVLY 48 (62)
T ss_pred EEEECCCCCCHHHHHHHHHHHHc
Confidence 88999999999999999986543
No 280
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=92.53 E-value=0.94 Score=44.33 Aligned_cols=23 Identities=4% Similarity=0.044 Sum_probs=18.8
Q ss_pred EEEEeecCCCCHHHHHHHHHHHH
Q 042025 790 VWQARARDRVTVDEAFKYIREVL 812 (844)
Q Consensus 790 vh~T~AtDte~I~evF~~V~e~I 812 (844)
+.++||.++.+++..++.+.+.+
T Consensus 62 ii~vSa~~~~gi~~L~~~i~~~~ 84 (155)
T cd01849 62 PFKISATNGQGIEKKESAFTKQT 84 (155)
T ss_pred EEEEeccCCcChhhHHHHHHHHh
Confidence 67889999999998888886653
No 281
>COG4639 Predicted kinase [General function prediction only]
Probab=92.50 E-value=0.21 Score=50.72 Aligned_cols=17 Identities=41% Similarity=0.661 Sum_probs=15.8
Q ss_pred EEEeeccCCChhhHHHH
Q 042025 431 LLLLGLQGAGTSTIFKQ 447 (844)
Q Consensus 431 LLLLGsgeSGKSTI~KQ 447 (844)
++|.|.++|||||++|+
T Consensus 5 vvL~G~~~sGKsT~ak~ 21 (168)
T COG4639 5 VVLRGASGSGKSTFAKE 21 (168)
T ss_pred EEEecCCCCchhHHHHH
Confidence 67889999999999998
No 282
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=92.44 E-value=0.48 Score=57.67 Aligned_cols=133 Identities=17% Similarity=0.258 Sum_probs=76.4
Q ss_pred EEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcEEEE
Q 042025 648 YQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFVLI 727 (844)
Q Consensus 648 ~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpiILf 727 (844)
+.+||.-|+ .+.-.+-..--..|+..|.|||+-. | ..-.-+||+.|++. +++||||-
T Consensus 542 ~lvIdtpgh-EsFtnlRsrgsslC~~aIlvvdImh-----------G----lepqtiESi~lLR~-------rktpFivA 598 (1064)
T KOG1144|consen 542 LLVIDTPGH-ESFTNLRSRGSSLCDLAILVVDIMH-----------G----LEPQTIESINLLRM-------RKTPFIVA 598 (1064)
T ss_pred eEEecCCCc-hhhhhhhhccccccceEEEEeehhc-----------c----CCcchhHHHHHHHh-------cCCCeEEe
Confidence 668888888 5544444444456899999999863 1 12233688888764 68999999
Q ss_pred ecccchhhhhhhccccccccccCCCCCCcC---CCC--ChhhHHHHHHHHHHHHHh--hhc----c--CCCCcEEEEEEe
Q 042025 728 LNKYDLFEEKVNRVHLSTCEWFNDFSPVRT---HHN--NQSLAHQAYYYVAMKFKD--LYA----S--LTGRKLFVWQAR 794 (844)
Q Consensus 728 LNK~DLfeeKI~~spLs~c~~FPDF~g~~~---~~n--~~sl~e~A~~YI~~KFl~--L~~----s--~~~Rklyvh~T~ 794 (844)
|||+|.+-. -..| | +.+... .++ .+..+..=.+-|...|.. |+. . ..++-+-+..||
T Consensus 599 LNKiDRLYg------wk~~---p-~~~i~~~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTS 668 (1064)
T KOG1144|consen 599 LNKIDRLYG------WKSC---P-NAPIVEALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTS 668 (1064)
T ss_pred ehhhhhhcc------cccC---C-CchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecc
Confidence 999998742 1111 0 000000 000 000011111223333322 111 1 124566788999
Q ss_pred ecCCCCHHHHHHHHHHHHh
Q 042025 795 ARDRVTVDEAFKYIREVLK 813 (844)
Q Consensus 795 AtDte~I~evF~~V~e~Ik 813 (844)
|+.|++|-..+-||.+.-.
T Consensus 669 A~sGeGipdLl~llv~ltQ 687 (1064)
T KOG1144|consen 669 AISGEGIPDLLLLLVQLTQ 687 (1064)
T ss_pred cccCCCcHHHHHHHHHHHH
Confidence 9999999999998886543
No 283
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=92.28 E-value=0.099 Score=49.50 Aligned_cols=30 Identities=27% Similarity=0.386 Sum_probs=22.1
Q ss_pred EEEeeccCCChhhHHHHHHHHh-cCCCCHHH
Q 042025 431 LLLLGLQGAGTSTIFKQAKFLY-GNKFTAEE 460 (844)
Q Consensus 431 LLLLGsgeSGKSTI~KQmKiLy-~~gFS~eE 460 (844)
|+|.|.+||||||+.|++.-.. ..-++.++
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~~~~i~~D~ 32 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLGAVVISQDE 32 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHSTEEEEEHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCEEEeHHH
Confidence 6899999999999999976333 22355554
No 284
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=92.28 E-value=0.098 Score=61.07 Aligned_cols=47 Identities=23% Similarity=0.459 Sum_probs=38.6
Q ss_pred cEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcEEEEecccchhh
Q 042025 672 RVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFVLILNKYDLFE 735 (844)
Q Consensus 672 ~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpiILfLNK~DLfe 735 (844)
.||+|+.|||+- | ---+.+-++||++| .|.|+|.|+||++||+|+..
T Consensus 249 aaVLYfmDLSe~---C------------GySva~QvkLfhsI--KpLFaNK~~IlvlNK~D~m~ 295 (620)
T KOG1490|consen 249 SAVLYFMDLSEM---C------------GYSVAAQVKLYHSI--KPLFANKVTILVLNKIDAMR 295 (620)
T ss_pred hhheeeeechhh---h------------CCCHHHHHHHHHHh--HHHhcCCceEEEeecccccC
Confidence 579999999961 1 23456778999998 47899999999999999975
No 285
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=92.21 E-value=0.099 Score=52.51 Aligned_cols=24 Identities=42% Similarity=0.689 Sum_probs=21.6
Q ss_pred cceeeEEEeeccCCChhhHHHHHH
Q 042025 426 KKVQKLLLLGLQGAGTSTIFKQAK 449 (844)
Q Consensus 426 k~~iKLLLLGsgeSGKSTI~KQmK 449 (844)
+..+||+|+|.+++|||||++++.
T Consensus 15 ~~~~kv~lvG~~~vGKTsli~~~~ 38 (182)
T PTZ00133 15 KKEVRILMVGLDAAGKTTILYKLK 38 (182)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHh
Confidence 456899999999999999999974
No 286
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=92.20 E-value=0.095 Score=49.98 Aligned_cols=20 Identities=30% Similarity=0.617 Sum_probs=18.7
Q ss_pred eeEEEeeccCCChhhHHHHH
Q 042025 429 QKLLLLGLQGAGTSTIFKQA 448 (844)
Q Consensus 429 iKLLLLGsgeSGKSTI~KQm 448 (844)
+||+++|.++||||||++.+
T Consensus 1 ~kv~v~G~~~~GKTtli~~l 20 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRF 20 (164)
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 59999999999999999976
No 287
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=92.18 E-value=0.11 Score=50.34 Aligned_cols=21 Identities=38% Similarity=0.588 Sum_probs=19.3
Q ss_pred eeeEEEeeccCCChhhHHHHH
Q 042025 428 VQKLLLLGLQGAGTSTIFKQA 448 (844)
Q Consensus 428 ~iKLLLLGsgeSGKSTI~KQm 448 (844)
.+||+++|.+++|||||+.++
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~ 22 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRF 22 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHH
Confidence 479999999999999999876
No 288
>COG1084 Predicted GTPase [General function prediction only]
Probab=92.08 E-value=0.28 Score=54.92 Aligned_cols=71 Identities=21% Similarity=0.308 Sum_probs=48.5
Q ss_pred CceEEEEEeCCCCC----CCcccce----eccCC-ccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHc
Q 042025 645 LTKYQLIRVNAKGM----NEGCKWV----EMFED-VRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIR 715 (844)
Q Consensus 645 ~~~~~liDVGGQ~r----seR~KW~----~~Fed-V~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n 715 (844)
..+||++|+-|- . .+|..-. .-... .++|+|++|.|+..-+ -+++-..||++|-.
T Consensus 214 ~~R~QvIDTPGl-LDRPl~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~cgy---------------~lE~Q~~L~~eIk~ 277 (346)
T COG1084 214 YLRIQVIDTPGL-LDRPLEERNEIERQAILALRHLAGVILFLFDPSETCGY---------------SLEEQISLLEEIKE 277 (346)
T ss_pred CceEEEecCCcc-cCCChHHhcHHHHHHHHHHHHhcCeEEEEEcCccccCC---------------CHHHHHHHHHHHHH
Confidence 358999999987 2 1221110 00111 4689999999973322 24566888999876
Q ss_pred CCCCCCCcEEEEecccchh
Q 042025 716 HPCFKDTPFVLILNKYDLF 734 (844)
Q Consensus 716 ~p~f~~tpiILfLNK~DLf 734 (844)
. |. .|+++++||.|+-
T Consensus 278 ~--f~-~p~v~V~nK~D~~ 293 (346)
T COG1084 278 L--FK-APIVVVINKIDIA 293 (346)
T ss_pred h--cC-CCeEEEEeccccc
Confidence 4 66 8999999999987
No 289
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=92.06 E-value=0.12 Score=47.71 Aligned_cols=19 Identities=21% Similarity=0.496 Sum_probs=17.9
Q ss_pred eEEEeeccCCChhhHHHHH
Q 042025 430 KLLLLGLQGAGTSTIFKQA 448 (844)
Q Consensus 430 KLLLLGsgeSGKSTI~KQm 448 (844)
||+|+|..++|||||++.+
T Consensus 1 ~V~iiG~~~~GKSTlin~l 19 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINAL 19 (116)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHH
Confidence 6899999999999999987
No 290
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=92.04 E-value=0.1 Score=50.15 Aligned_cols=20 Identities=40% Similarity=0.529 Sum_probs=18.7
Q ss_pred eeEEEeeccCCChhhHHHHH
Q 042025 429 QKLLLLGLQGAGTSTIFKQA 448 (844)
Q Consensus 429 iKLLLLGsgeSGKSTI~KQm 448 (844)
+||+++|.+++|||||++++
T Consensus 1 ~ki~v~G~~~~GKTsli~~~ 20 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQF 20 (164)
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 48999999999999999986
No 291
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=91.90 E-value=0.12 Score=49.48 Aligned_cols=19 Identities=21% Similarity=0.623 Sum_probs=17.8
Q ss_pred eEEEeeccCCChhhHHHHH
Q 042025 430 KLLLLGLQGAGTSTIFKQA 448 (844)
Q Consensus 430 KLLLLGsgeSGKSTI~KQm 448 (844)
||+++|.+++|||||++++
T Consensus 1 Ki~vvG~~~vGKtsl~~~~ 19 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRL 19 (162)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHH
Confidence 8999999999999999864
No 292
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=91.87 E-value=0.12 Score=50.59 Aligned_cols=22 Identities=14% Similarity=0.385 Sum_probs=20.3
Q ss_pred ceeeEEEeeccCCChhhHHHHH
Q 042025 427 KVQKLLLLGLQGAGTSTIFKQA 448 (844)
Q Consensus 427 ~~iKLLLLGsgeSGKSTI~KQm 448 (844)
|.+||+++|.+++|||||+.++
T Consensus 1 r~~ki~vvG~~~vGKTsli~~~ 22 (170)
T cd04115 1 RIFKIIVIGDSNVGKTCLTYRF 22 (170)
T ss_pred CceEEEEECCCCCCHHHHHHHH
Confidence 4689999999999999999987
No 293
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=91.72 E-value=0.13 Score=49.62 Aligned_cols=23 Identities=22% Similarity=0.488 Sum_probs=21.0
Q ss_pred cceeeEEEeeccCCChhhHHHHH
Q 042025 426 KKVQKLLLLGLQGAGTSTIFKQA 448 (844)
Q Consensus 426 k~~iKLLLLGsgeSGKSTI~KQm 448 (844)
+...||+++|.+++||||+++++
T Consensus 5 ~~~~~v~v~G~~~~GKSsli~~l 27 (169)
T cd04114 5 DFLFKIVLIGNAGVGKTCLVRRF 27 (169)
T ss_pred CceeEEEEECCCCCCHHHHHHHH
Confidence 45689999999999999999986
No 294
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=91.70 E-value=0.12 Score=49.24 Aligned_cols=21 Identities=29% Similarity=0.442 Sum_probs=19.1
Q ss_pred eeEEEeeccCCChhhHHHHHH
Q 042025 429 QKLLLLGLQGAGTSTIFKQAK 449 (844)
Q Consensus 429 iKLLLLGsgeSGKSTI~KQmK 449 (844)
.||+++|.+++||||+++++.
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~ 21 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFM 21 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 489999999999999998875
No 295
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=91.67 E-value=0.12 Score=50.52 Aligned_cols=20 Identities=35% Similarity=0.707 Sum_probs=18.7
Q ss_pred eeEEEeeccCCChhhHHHHH
Q 042025 429 QKLLLLGLQGAGTSTIFKQA 448 (844)
Q Consensus 429 iKLLLLGsgeSGKSTI~KQm 448 (844)
+||+++|.+++|||||++++
T Consensus 1 ~kv~~~G~~~~GKTsli~~l 20 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKL 20 (159)
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 58999999999999999986
No 296
>PRK06217 hypothetical protein; Validated
Probab=91.56 E-value=0.14 Score=51.55 Aligned_cols=25 Identities=20% Similarity=0.267 Sum_probs=21.3
Q ss_pred eeEEEeeccCCChhhHHHHHHHHhc
Q 042025 429 QKLLLLGLQGAGTSTIFKQAKFLYG 453 (844)
Q Consensus 429 iKLLLLGsgeSGKSTI~KQmKiLy~ 453 (844)
.||+|+|.+||||||+.+++.-.++
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~l~ 26 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAERLD 26 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4799999999999999998865543
No 297
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=91.54 E-value=0.13 Score=48.81 Aligned_cols=21 Identities=24% Similarity=0.354 Sum_probs=18.8
Q ss_pred eeEEEeeccCCChhhHHHHHH
Q 042025 429 QKLLLLGLQGAGTSTIFKQAK 449 (844)
Q Consensus 429 iKLLLLGsgeSGKSTI~KQmK 449 (844)
+||+++|.+++||||+++++.
T Consensus 1 ~ki~i~G~~~~GKStli~~l~ 21 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYV 21 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 599999999999999998663
No 298
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=91.44 E-value=0.14 Score=49.07 Aligned_cols=21 Identities=33% Similarity=0.423 Sum_probs=19.2
Q ss_pred eeeEEEeeccCCChhhHHHHH
Q 042025 428 VQKLLLLGLQGAGTSTIFKQA 448 (844)
Q Consensus 428 ~iKLLLLGsgeSGKSTI~KQm 448 (844)
.+||+++|.+++|||||++++
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l 21 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRF 21 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 479999999999999999876
No 299
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=91.44 E-value=0.13 Score=49.62 Aligned_cols=23 Identities=43% Similarity=0.775 Sum_probs=20.0
Q ss_pred eEEEeeccCCChhhHHHHHHHHh
Q 042025 430 KLLLLGLQGAGTSTIFKQAKFLY 452 (844)
Q Consensus 430 KLLLLGsgeSGKSTI~KQmKiLy 452 (844)
+|+++|..++|||||++|+.-.+
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~ 23 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLF 23 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhc
Confidence 58999999999999999986443
No 300
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=91.28 E-value=0.97 Score=45.01 Aligned_cols=23 Identities=22% Similarity=0.264 Sum_probs=19.4
Q ss_pred EEEEeecCCCCHHHHHHHHHHHH
Q 042025 790 VWQARARDRVTVDEAFKYIREVL 812 (844)
Q Consensus 790 vh~T~AtDte~I~evF~~V~e~I 812 (844)
+.++||.++.++++..+.+.+.+
T Consensus 78 vi~iSa~~~~gi~~L~~~l~~~l 100 (171)
T cd01856 78 VLFVNAKSGKGVKKLLKAAKKLL 100 (171)
T ss_pred EEEEECCCcccHHHHHHHHHHHH
Confidence 56889999999999888888765
No 301
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=91.25 E-value=0.14 Score=48.93 Aligned_cols=21 Identities=33% Similarity=0.550 Sum_probs=19.1
Q ss_pred eeEEEeeccCCChhhHHHHHH
Q 042025 429 QKLLLLGLQGAGTSTIFKQAK 449 (844)
Q Consensus 429 iKLLLLGsgeSGKSTI~KQmK 449 (844)
.||+|+|.++|||||+++++.
T Consensus 1 ~ki~liG~~~~GKSsli~~l~ 21 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFM 21 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 489999999999999999873
No 302
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=91.16 E-value=0.15 Score=48.77 Aligned_cols=21 Identities=19% Similarity=0.406 Sum_probs=18.9
Q ss_pred eeEEEeeccCCChhhHHHHHH
Q 042025 429 QKLLLLGLQGAGTSTIFKQAK 449 (844)
Q Consensus 429 iKLLLLGsgeSGKSTI~KQmK 449 (844)
+||+++|..++||||++.++.
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~ 21 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFV 21 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 599999999999999998753
No 303
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=91.14 E-value=0.15 Score=49.59 Aligned_cols=20 Identities=15% Similarity=0.282 Sum_probs=18.2
Q ss_pred eeEEEeeccCCChhhHHHHH
Q 042025 429 QKLLLLGLQGAGTSTIFKQA 448 (844)
Q Consensus 429 iKLLLLGsgeSGKSTI~KQm 448 (844)
+|++++|.+++|||||+.++
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~ 20 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSY 20 (174)
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 58999999999999999665
No 304
>PLN00223 ADP-ribosylation factor; Provisional
Probab=91.12 E-value=0.15 Score=51.22 Aligned_cols=24 Identities=42% Similarity=0.696 Sum_probs=21.3
Q ss_pred cceeeEEEeeccCCChhhHHHHHH
Q 042025 426 KKVQKLLLLGLQGAGTSTIFKQAK 449 (844)
Q Consensus 426 k~~iKLLLLGsgeSGKSTI~KQmK 449 (844)
++.+||+++|.++||||||++++.
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~ 38 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLK 38 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHc
Confidence 556899999999999999998763
No 305
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=91.11 E-value=0.16 Score=49.87 Aligned_cols=23 Identities=39% Similarity=0.703 Sum_probs=20.5
Q ss_pred ceeeEEEeeccCCChhhHHHHHH
Q 042025 427 KVQKLLLLGLQGAGTSTIFKQAK 449 (844)
Q Consensus 427 ~~iKLLLLGsgeSGKSTI~KQmK 449 (844)
..+||+++|.+++||||+++++.
T Consensus 13 ~~~kv~ivG~~~~GKTsL~~~l~ 35 (173)
T cd04154 13 REMRILILGLDNAGKTTILKKLL 35 (173)
T ss_pred CccEEEEECCCCCCHHHHHHHHc
Confidence 46899999999999999999863
No 306
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=91.10 E-value=0.17 Score=51.75 Aligned_cols=24 Identities=33% Similarity=0.689 Sum_probs=21.5
Q ss_pred hcceeeEEEeeccCCChhhHHHHH
Q 042025 425 QKKVQKLLLLGLQGAGTSTIFKQA 448 (844)
Q Consensus 425 ~k~~iKLLLLGsgeSGKSTI~KQm 448 (844)
.+++++||+||..+||||||+|-+
T Consensus 13 kerE~riLiLGLdNsGKTti~~kl 36 (185)
T KOG0073|consen 13 KEREVRILILGLDNSGKTTIVKKL 36 (185)
T ss_pred hhheeEEEEEecCCCCchhHHHHh
Confidence 466999999999999999999864
No 307
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=91.09 E-value=0.15 Score=50.66 Aligned_cols=103 Identities=18% Similarity=0.347 Sum_probs=59.2
Q ss_pred eEEEEEeCCCCC-----CCcccce----eccC---CccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHH
Q 042025 647 KYQLIRVNAKGM-----NEGCKWV----EMFE---DVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMI 714 (844)
Q Consensus 647 ~~~liDVGGQ~r-----seR~KW~----~~Fe---dV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~ 714 (844)
.+.+||+.|.+. .++..|. .|+. .++++|||+|.+. . . .. ....++..+
T Consensus 65 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~--~-~------------~~---~~~~~~~~~- 125 (179)
T TIGR03598 65 GFRLVDLPGYGYAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRH--P-L------------KE---LDLEMLEWL- 125 (179)
T ss_pred cEEEEeCCCCccccCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCC--C-C------------CH---HHHHHHHHH-
Confidence 589999999631 1245554 2333 4689999999763 1 1 00 111222222
Q ss_pred cCCCCCCCcEEEEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEe
Q 042025 715 RHPCFKDTPFVLILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQAR 794 (844)
Q Consensus 715 n~p~f~~tpiILfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~ 794 (844)
.. .+.|+++++||+|+..+. . .+...+.|++.+... ...+-++.+|
T Consensus 126 ~~---~~~pviiv~nK~D~~~~~----~----------------------~~~~~~~i~~~l~~~-----~~~~~v~~~S 171 (179)
T TIGR03598 126 RE---RGIPVLIVLTKADKLKKS----E----------------------LNKQLKKIKKALKKD-----ADDPSVQLFS 171 (179)
T ss_pred HH---cCCCEEEEEECcccCCHH----H----------------------HHHHHHHHHHHHhhc-----cCCCceEEEE
Confidence 21 267999999999986430 0 122233344433221 2345689999
Q ss_pred ecCCCCHH
Q 042025 795 ARDRVTVD 802 (844)
Q Consensus 795 AtDte~I~ 802 (844)
|++++||+
T Consensus 172 a~~g~gi~ 179 (179)
T TIGR03598 172 SLKKTGID 179 (179)
T ss_pred CCCCCCCC
Confidence 99999873
No 308
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=91.08 E-value=0.15 Score=49.63 Aligned_cols=21 Identities=29% Similarity=0.460 Sum_probs=19.0
Q ss_pred eeEEEeeccCCChhhHHHHHH
Q 042025 429 QKLLLLGLQGAGTSTIFKQAK 449 (844)
Q Consensus 429 iKLLLLGsgeSGKSTI~KQmK 449 (844)
+||+|+|.+++|||||+.++.
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~ 21 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFL 21 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 589999999999999998763
No 309
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=91.02 E-value=0.16 Score=50.92 Aligned_cols=24 Identities=42% Similarity=0.684 Sum_probs=21.7
Q ss_pred cceeeEEEeeccCCChhhHHHHHH
Q 042025 426 KKVQKLLLLGLQGAGTSTIFKQAK 449 (844)
Q Consensus 426 k~~iKLLLLGsgeSGKSTI~KQmK 449 (844)
++..||+++|.+++||||+++++.
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~ 38 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLK 38 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHh
Confidence 667999999999999999999864
No 310
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=90.98 E-value=0.17 Score=48.71 Aligned_cols=21 Identities=29% Similarity=0.585 Sum_probs=19.7
Q ss_pred eeeEEEeeccCCChhhHHHHH
Q 042025 428 VQKLLLLGLQGAGTSTIFKQA 448 (844)
Q Consensus 428 ~iKLLLLGsgeSGKSTI~KQm 448 (844)
.+||+++|.+++|||||++++
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l 23 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRF 23 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHH
Confidence 479999999999999999987
No 311
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=90.98 E-value=0.16 Score=49.31 Aligned_cols=20 Identities=25% Similarity=0.454 Sum_probs=18.6
Q ss_pred eeEEEeeccCCChhhHHHHH
Q 042025 429 QKLLLLGLQGAGTSTIFKQA 448 (844)
Q Consensus 429 iKLLLLGsgeSGKSTI~KQm 448 (844)
+||+++|..++|||||+.++
T Consensus 2 ~ki~i~G~~~~GKSsli~~l 21 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRY 21 (165)
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 69999999999999999965
No 312
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=90.97 E-value=0.22 Score=51.87 Aligned_cols=24 Identities=25% Similarity=0.595 Sum_probs=20.9
Q ss_pred EEEeeccCCChhhHHHHHHHHhcC
Q 042025 431 LLLLGLQGAGTSTIFKQAKFLYGN 454 (844)
Q Consensus 431 LLLLGsgeSGKSTI~KQmKiLy~~ 454 (844)
..++|++||||||+++.+..+++.
T Consensus 28 ~~ivGpNGaGKSTll~~i~~~~G~ 51 (212)
T cd03274 28 SAIVGPNGSGKSNVIDSMLFVFGF 51 (212)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcc
Confidence 568999999999999999877653
No 313
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=90.97 E-value=0.15 Score=48.26 Aligned_cols=20 Identities=40% Similarity=0.527 Sum_probs=18.5
Q ss_pred eEEEeeccCCChhhHHHHHH
Q 042025 430 KLLLLGLQGAGTSTIFKQAK 449 (844)
Q Consensus 430 KLLLLGsgeSGKSTI~KQmK 449 (844)
||+++|..+|||||++.++.
T Consensus 1 ki~i~G~~~~GKTsli~~l~ 20 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFV 20 (160)
T ss_pred CEEEECCCCCCHHHHHHHHH
Confidence 79999999999999999873
No 314
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=90.92 E-value=0.17 Score=48.38 Aligned_cols=21 Identities=33% Similarity=0.449 Sum_probs=18.9
Q ss_pred eeEEEeeccCCChhhHHHHHH
Q 042025 429 QKLLLLGLQGAGTSTIFKQAK 449 (844)
Q Consensus 429 iKLLLLGsgeSGKSTI~KQmK 449 (844)
+||+++|..++|||||+.++.
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~ 22 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFV 22 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 699999999999999987664
No 315
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=90.86 E-value=0.17 Score=51.27 Aligned_cols=22 Identities=27% Similarity=0.490 Sum_probs=20.0
Q ss_pred eeeEEEeeccCCChhhHHHHHH
Q 042025 428 VQKLLLLGLQGAGTSTIFKQAK 449 (844)
Q Consensus 428 ~iKLLLLGsgeSGKSTI~KQmK 449 (844)
.+||+++|.+++||||++.++.
T Consensus 5 ~~kivv~G~~g~GKTtl~~~l~ 26 (219)
T COG1100 5 EFKIVVLGDGGVGKTTLLNRLV 26 (219)
T ss_pred eEEEEEEcCCCccHHHHHHHHh
Confidence 3899999999999999998864
No 316
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=90.84 E-value=0.42 Score=51.01 Aligned_cols=134 Identities=21% Similarity=0.245 Sum_probs=66.1
Q ss_pred eEEEEEeCCCCCCCcccce------ecc--CCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCC
Q 042025 647 KYQLIRVNAKGMNEGCKWV------EMF--EDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPC 718 (844)
Q Consensus 647 ~~~liDVGGQ~rseR~KW~------~~F--edV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~ 718 (844)
.|-++|.-|| -..-.-|. +.+ ..--+++|++|..-. .+ ..+-+.-.+.-+..+++
T Consensus 92 ~y~l~DtPGQ-iElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~-------~~------~~~f~s~~L~s~s~~~~--- 154 (238)
T PF03029_consen 92 DYLLFDTPGQ-IELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFC-------SD------PSKFVSSLLLSLSIMLR--- 154 (238)
T ss_dssp SEEEEE--SS-HHHHHHSHHHHHHHHTSSS----EEEEEE-GGG--------SS------HHHHHHHHHHHHHHHHH---
T ss_pred cEEEEeCCCC-EEEEEechhHHHHHHHHhhhcceEEEEEEecccc-------cC------hhhHHHHHHHHHHHHhh---
Confidence 5889999999 32111122 122 234579999998842 12 12333333444444444
Q ss_pred CCCCcEEEEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHH----HHHHHHHHHhhhccCCCCcEEEEEEe
Q 042025 719 FKDTPFVLILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQA----YYYVAMKFKDLYASLTGRKLFVWQAR 794 (844)
Q Consensus 719 f~~tpiILfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A----~~YI~~KFl~L~~s~~~Rklyvh~T~ 794 (844)
.+.|+|.++||.|+..+.++. .+ +||.|... .+.. ...+.....++... -+..+-++..+
T Consensus 155 -~~lP~vnvlsK~Dl~~~~~~~-~l---~~~~d~~~----------l~~~~~~~~~~l~~~i~~~l~~-~~~~~~f~pls 218 (238)
T PF03029_consen 155 -LELPHVNVLSKIDLLSKYLEF-IL---EWFEDPDS----------LEDLLESDYKKLNEEIAELLDD-FGLVIRFIPLS 218 (238)
T ss_dssp -HTSEEEEEE--GGGS-HHHHH-HH---HHHHSHHH----------HHHHHHT-HHHHHHHHHHHCCC-CSSS---EE-B
T ss_pred -CCCCEEEeeeccCcccchhHH-HH---HHhcChHH----------HHHHHHHHHHHHHHHHHHHHhh-cCCCceEEEEE
Confidence 268999999999999865222 12 45665431 1111 11122222222211 12333688899
Q ss_pred ecCCCCHHHHHHHHHHHHh
Q 042025 795 ARDRVTVDEAFKYIREVLK 813 (844)
Q Consensus 795 AtDte~I~evF~~V~e~Ik 813 (844)
+.+++++.+.+..|.+.+.
T Consensus 219 ~~~~~~~~~L~~~id~a~~ 237 (238)
T PF03029_consen 219 SKDGEGMEELLAAIDKANQ 237 (238)
T ss_dssp TTTTTTHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHhc
Confidence 9999999999999887763
No 317
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=90.80 E-value=0.19 Score=48.63 Aligned_cols=22 Identities=18% Similarity=0.401 Sum_probs=19.9
Q ss_pred ceeeEEEeeccCCChhhHHHHH
Q 042025 427 KVQKLLLLGLQGAGTSTIFKQA 448 (844)
Q Consensus 427 ~~iKLLLLGsgeSGKSTI~KQm 448 (844)
...||+++|..++|||||+.++
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l 23 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRF 23 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHH
Confidence 3579999999999999999985
No 318
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=90.77 E-value=0.17 Score=49.30 Aligned_cols=21 Identities=33% Similarity=0.460 Sum_probs=19.4
Q ss_pred eeeEEEeeccCCChhhHHHHH
Q 042025 428 VQKLLLLGLQGAGTSTIFKQA 448 (844)
Q Consensus 428 ~iKLLLLGsgeSGKSTI~KQm 448 (844)
++||+|+|.+++|||||++++
T Consensus 1 ~~ki~liG~~~~GKTsli~~~ 21 (168)
T cd04177 1 DYKIVVLGAGGVGKSALTVQF 21 (168)
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 369999999999999999887
No 319
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=90.76 E-value=0.17 Score=49.28 Aligned_cols=20 Identities=30% Similarity=0.556 Sum_probs=18.4
Q ss_pred eeEEEeeccCCChhhHHHHH
Q 042025 429 QKLLLLGLQGAGTSTIFKQA 448 (844)
Q Consensus 429 iKLLLLGsgeSGKSTI~KQm 448 (844)
+||+++|.+++|||||+.++
T Consensus 1 ~ki~vvG~~~~GKTsli~~~ 20 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRF 20 (161)
T ss_pred CEEEEECcCCCCHHHHHHHH
Confidence 48999999999999999876
No 320
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=90.75 E-value=0.19 Score=49.28 Aligned_cols=22 Identities=32% Similarity=0.462 Sum_probs=20.0
Q ss_pred ceeeEEEeeccCCChhhHHHHH
Q 042025 427 KVQKLLLLGLQGAGTSTIFKQA 448 (844)
Q Consensus 427 ~~iKLLLLGsgeSGKSTI~KQm 448 (844)
..+||+++|.+++|||||++++
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~ 24 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQY 24 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHH
Confidence 4689999999999999999875
No 321
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=90.72 E-value=0.17 Score=50.18 Aligned_cols=24 Identities=38% Similarity=0.663 Sum_probs=21.2
Q ss_pred cceeeEEEeeccCCChhhHHHHHH
Q 042025 426 KKVQKLLLLGLQGAGTSTIFKQAK 449 (844)
Q Consensus 426 k~~iKLLLLGsgeSGKSTI~KQmK 449 (844)
+..+||+|+|.+++|||||+.++.
T Consensus 11 ~~~~ki~l~G~~~~GKTsL~~~~~ 34 (175)
T smart00177 11 NKEMRILMVGLDAAGKTTILYKLK 34 (175)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHh
Confidence 457999999999999999998863
No 322
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=90.60 E-value=0.2 Score=49.74 Aligned_cols=22 Identities=32% Similarity=0.446 Sum_probs=19.7
Q ss_pred eeeEEEeeccCCChhhHHHHHH
Q 042025 428 VQKLLLLGLQGAGTSTIFKQAK 449 (844)
Q Consensus 428 ~iKLLLLGsgeSGKSTI~KQmK 449 (844)
.+|++++|..++|||||++|+.
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~ 23 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFI 23 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHH
Confidence 5799999999999999998764
No 323
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=90.56 E-value=0.19 Score=47.94 Aligned_cols=21 Identities=33% Similarity=0.480 Sum_probs=19.1
Q ss_pred eeEEEeeccCCChhhHHHHHH
Q 042025 429 QKLLLLGLQGAGTSTIFKQAK 449 (844)
Q Consensus 429 iKLLLLGsgeSGKSTI~KQmK 449 (844)
+||+++|.+++||||++.++.
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~ 21 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYC 21 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 599999999999999999763
No 324
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=90.54 E-value=0.21 Score=45.92 Aligned_cols=22 Identities=27% Similarity=0.389 Sum_probs=18.6
Q ss_pred EEEeeccCCChhhHHHHHHHHh
Q 042025 431 LLLLGLQGAGTSTIFKQAKFLY 452 (844)
Q Consensus 431 LLLLGsgeSGKSTI~KQmKiLy 452 (844)
|+|-|..|||||||.+.+.-..
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999876433
No 325
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=90.49 E-value=0.19 Score=49.72 Aligned_cols=23 Identities=39% Similarity=0.569 Sum_probs=20.6
Q ss_pred ceeeEEEeeccCCChhhHHHHHH
Q 042025 427 KVQKLLLLGLQGAGTSTIFKQAK 449 (844)
Q Consensus 427 ~~iKLLLLGsgeSGKSTI~KQmK 449 (844)
...||+++|.+++|||||++++.
T Consensus 14 ~~~kv~~~G~~~~GKTsl~~~l~ 36 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFL 36 (174)
T ss_pred CccEEEEECCCCCCHHHHHHHHc
Confidence 46799999999999999998874
No 326
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=90.45 E-value=0.21 Score=47.13 Aligned_cols=22 Identities=27% Similarity=0.483 Sum_probs=18.6
Q ss_pred eeeEEEeeccCCChhhHHHHHH
Q 042025 428 VQKLLLLGLQGAGTSTIFKQAK 449 (844)
Q Consensus 428 ~iKLLLLGsgeSGKSTI~KQmK 449 (844)
--.++++|..||||||++|-+-
T Consensus 11 g~~~~i~G~nGsGKStLl~~l~ 32 (137)
T PF00005_consen 11 GEIVAIVGPNGSGKSTLLKALA 32 (137)
T ss_dssp TSEEEEEESTTSSHHHHHHHHT
T ss_pred CCEEEEEccCCCccccceeeec
Confidence 3478999999999999998653
No 327
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=90.40 E-value=0.2 Score=47.69 Aligned_cols=21 Identities=14% Similarity=0.376 Sum_probs=19.5
Q ss_pred eeeEEEeeccCCChhhHHHHH
Q 042025 428 VQKLLLLGLQGAGTSTIFKQA 448 (844)
Q Consensus 428 ~iKLLLLGsgeSGKSTI~KQm 448 (844)
.+||+++|..++||||++.++
T Consensus 2 ~~~i~i~G~~~~GKstli~~l 22 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNAL 22 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHH
Confidence 579999999999999999986
No 328
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=90.39 E-value=0.21 Score=48.50 Aligned_cols=22 Identities=32% Similarity=0.596 Sum_probs=20.2
Q ss_pred ceeeEEEeeccCCChhhHHHHH
Q 042025 427 KVQKLLLLGLQGAGTSTIFKQA 448 (844)
Q Consensus 427 ~~iKLLLLGsgeSGKSTI~KQm 448 (844)
..+||+++|.+++|||||++++
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~ 25 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRY 25 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHH
Confidence 4589999999999999999986
No 329
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=90.31 E-value=0.18 Score=50.61 Aligned_cols=20 Identities=30% Similarity=0.546 Sum_probs=18.5
Q ss_pred eeEEEeeccCCChhhHHHHH
Q 042025 429 QKLLLLGLQGAGTSTIFKQA 448 (844)
Q Consensus 429 iKLLLLGsgeSGKSTI~KQm 448 (844)
+||+|+|..++|||||+.++
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~ 20 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRF 20 (191)
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 58999999999999999876
No 330
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=90.29 E-value=1.2 Score=48.72 Aligned_cols=49 Identities=22% Similarity=0.241 Sum_probs=31.9
Q ss_pred ccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcEEEEecccchhh
Q 042025 667 MFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFVLILNKYDLFE 735 (844)
Q Consensus 667 ~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpiILfLNK~DLfe 735 (844)
...++|.+|+|+|+.+ ..- ..+++..-+..++. .+.|++|++||.||..
T Consensus 75 i~anvD~vllV~d~~~-------p~~------s~~~ldr~L~~~~~-------~~ip~iIVlNK~DL~~ 123 (287)
T cd01854 75 IAANVDQLVIVVSLNE-------PFF------NPRLLDRYLVAAEA-------AGIEPVIVLTKADLLD 123 (287)
T ss_pred EEEeCCEEEEEEEcCC-------CCC------CHHHHHHHHHHHHH-------cCCCEEEEEEHHHCCC
Confidence 4789999999999874 110 12333332332221 3689999999999854
No 331
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=90.19 E-value=0.19 Score=50.90 Aligned_cols=21 Identities=33% Similarity=0.559 Sum_probs=19.1
Q ss_pred eeEEEeeccCCChhhHHHHHH
Q 042025 429 QKLLLLGLQGAGTSTIFKQAK 449 (844)
Q Consensus 429 iKLLLLGsgeSGKSTI~KQmK 449 (844)
+||+++|.+++|||||++++.
T Consensus 1 ~KivivG~~~vGKTsli~~l~ 21 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYV 21 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 599999999999999999864
No 332
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=90.17 E-value=0.21 Score=48.56 Aligned_cols=20 Identities=20% Similarity=0.499 Sum_probs=18.7
Q ss_pred eeEEEeeccCCChhhHHHHH
Q 042025 429 QKLLLLGLQGAGTSTIFKQA 448 (844)
Q Consensus 429 iKLLLLGsgeSGKSTI~KQm 448 (844)
+||+++|.+++|||||++++
T Consensus 2 ~kv~~vG~~~vGKTsli~~~ 21 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRF 21 (165)
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 79999999999999999975
No 333
>PLN03108 Rab family protein; Provisional
Probab=90.11 E-value=0.22 Score=51.28 Aligned_cols=22 Identities=27% Similarity=0.448 Sum_probs=20.1
Q ss_pred ceeeEEEeeccCCChhhHHHHH
Q 042025 427 KVQKLLLLGLQGAGTSTIFKQA 448 (844)
Q Consensus 427 ~~iKLLLLGsgeSGKSTI~KQm 448 (844)
..+||+|||..++|||||++++
T Consensus 5 ~~~kivivG~~gvGKStLi~~l 26 (210)
T PLN03108 5 YLFKYIIIGDTGVGKSCLLLQF 26 (210)
T ss_pred cceEEEEECCCCCCHHHHHHHH
Confidence 4589999999999999999876
No 334
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=90.10 E-value=0.2 Score=49.27 Aligned_cols=21 Identities=24% Similarity=0.289 Sum_probs=19.1
Q ss_pred eeEEEeeccCCChhhHHHHHH
Q 042025 429 QKLLLLGLQGAGTSTIFKQAK 449 (844)
Q Consensus 429 iKLLLLGsgeSGKSTI~KQmK 449 (844)
+||+++|.+++|||||++++.
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~ 21 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYL 21 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHH
Confidence 589999999999999999874
No 335
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=90.05 E-value=0.23 Score=50.49 Aligned_cols=22 Identities=32% Similarity=0.582 Sum_probs=20.1
Q ss_pred ceeeEEEeeccCCChhhHHHHH
Q 042025 427 KVQKLLLLGLQGAGTSTIFKQA 448 (844)
Q Consensus 427 ~~iKLLLLGsgeSGKSTI~KQm 448 (844)
..+||+++|.+++|||||+.++
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l 26 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRF 26 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHH
Confidence 4689999999999999999877
No 336
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=89.90 E-value=0.23 Score=48.38 Aligned_cols=22 Identities=36% Similarity=0.563 Sum_probs=20.1
Q ss_pred eeeEEEeeccCCChhhHHHHHH
Q 042025 428 VQKLLLLGLQGAGTSTIFKQAK 449 (844)
Q Consensus 428 ~iKLLLLGsgeSGKSTI~KQmK 449 (844)
.+||+++|.+++|||||+.++.
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~ 24 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFS 24 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHh
Confidence 5899999999999999999873
No 337
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=89.90 E-value=0.23 Score=48.22 Aligned_cols=21 Identities=29% Similarity=0.550 Sum_probs=19.4
Q ss_pred eeeEEEeeccCCChhhHHHHH
Q 042025 428 VQKLLLLGLQGAGTSTIFKQA 448 (844)
Q Consensus 428 ~iKLLLLGsgeSGKSTI~KQm 448 (844)
.+|++++|.+++|||||+.++
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~ 22 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQF 22 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHH
Confidence 379999999999999999986
No 338
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=89.88 E-value=0.22 Score=48.03 Aligned_cols=20 Identities=30% Similarity=0.632 Sum_probs=18.4
Q ss_pred eeEEEeeccCCChhhHHHHH
Q 042025 429 QKLLLLGLQGAGTSTIFKQA 448 (844)
Q Consensus 429 iKLLLLGsgeSGKSTI~KQm 448 (844)
+||+++|.++|||||++..+
T Consensus 1 ~ki~viG~~~~GKSsl~~~l 20 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQY 20 (172)
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 58999999999999999875
No 339
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=89.86 E-value=0.22 Score=50.99 Aligned_cols=23 Identities=35% Similarity=0.479 Sum_probs=19.7
Q ss_pred cceeeEEEeeccCCChhhHHHHH
Q 042025 426 KKVQKLLLLGLQGAGTSTIFKQA 448 (844)
Q Consensus 426 k~~iKLLLLGsgeSGKSTI~KQm 448 (844)
...+|++|+|.+|||||||++++
T Consensus 7 ~~~~kv~liG~~g~GKTtLi~~~ 29 (215)
T PTZ00132 7 VPEFKLILVGDGGVGKTTFVKRH 29 (215)
T ss_pred CCCceEEEECCCCCCHHHHHHHH
Confidence 34589999999999999999753
No 340
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=89.84 E-value=0.24 Score=47.32 Aligned_cols=21 Identities=33% Similarity=0.433 Sum_probs=19.2
Q ss_pred eeeEEEeeccCCChhhHHHHH
Q 042025 428 VQKLLLLGLQGAGTSTIFKQA 448 (844)
Q Consensus 428 ~iKLLLLGsgeSGKSTI~KQm 448 (844)
.+||+++|.+++||||+++.+
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~ 22 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQF 22 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHH
Confidence 479999999999999999875
No 341
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=89.84 E-value=0.23 Score=49.08 Aligned_cols=24 Identities=42% Similarity=0.693 Sum_probs=20.9
Q ss_pred cceeeEEEeeccCCChhhHHHHHH
Q 042025 426 KKVQKLLLLGLQGAGTSTIFKQAK 449 (844)
Q Consensus 426 k~~iKLLLLGsgeSGKSTI~KQmK 449 (844)
+..+||+++|.+++|||||++++.
T Consensus 7 ~~~~kv~i~G~~~~GKTsli~~l~ 30 (168)
T cd04149 7 NKEMRILMLGLDAAGKTTILYKLK 30 (168)
T ss_pred CCccEEEEECcCCCCHHHHHHHHc
Confidence 346899999999999999999764
No 342
>PRK12288 GTPase RsgA; Reviewed
Probab=89.83 E-value=1.9 Score=48.67 Aligned_cols=23 Identities=9% Similarity=-0.022 Sum_probs=19.6
Q ss_pred EEEEEEeecCCCCHHHHHHHHHH
Q 042025 788 LFVWQARARDRVTVDEAFKYIRE 810 (844)
Q Consensus 788 lyvh~T~AtDte~I~evF~~V~e 810 (844)
+-++.+||.+++++++.++++.+
T Consensus 183 ~~v~~vSA~tg~GideL~~~L~~ 205 (347)
T PRK12288 183 YRVLMVSSHTGEGLEELEAALTG 205 (347)
T ss_pred CeEEEEeCCCCcCHHHHHHHHhh
Confidence 35788999999999999988865
No 343
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=89.79 E-value=0.23 Score=49.95 Aligned_cols=21 Identities=19% Similarity=0.450 Sum_probs=18.9
Q ss_pred eeEEEeeccCCChhhHHHHHH
Q 042025 429 QKLLLLGLQGAGTSTIFKQAK 449 (844)
Q Consensus 429 iKLLLLGsgeSGKSTI~KQmK 449 (844)
.||+|+|.+++|||||++++.
T Consensus 1 ~kivivG~~~vGKTsli~~~~ 21 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFT 21 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 389999999999999999863
No 344
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=89.77 E-value=0.26 Score=46.24 Aligned_cols=21 Identities=19% Similarity=0.322 Sum_probs=19.3
Q ss_pred eeeEEEeeccCCChhhHHHHH
Q 042025 428 VQKLLLLGLQGAGTSTIFKQA 448 (844)
Q Consensus 428 ~iKLLLLGsgeSGKSTI~KQm 448 (844)
..||+|+|..||||||++..+
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l 23 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNAL 23 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHH
Confidence 578999999999999999986
No 345
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=89.75 E-value=0.52 Score=47.14 Aligned_cols=22 Identities=27% Similarity=0.391 Sum_probs=18.9
Q ss_pred EEEeeccCCChhhHHHHHHHHh
Q 042025 431 LLLLGLQGAGTSTIFKQAKFLY 452 (844)
Q Consensus 431 LLLLGsgeSGKSTI~KQmKiLy 452 (844)
|+|.|.+||||||+.|++.-..
T Consensus 5 i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 5 IILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred EEEECCCCCCHHHHHHHHHHhh
Confidence 7889999999999999776544
No 346
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=89.74 E-value=0.21 Score=49.63 Aligned_cols=23 Identities=26% Similarity=0.460 Sum_probs=19.2
Q ss_pred eEEEeeccCCChhhHHHHHHHHh
Q 042025 430 KLLLLGLQGAGTSTIFKQAKFLY 452 (844)
Q Consensus 430 KLLLLGsgeSGKSTI~KQmKiLy 452 (844)
-++|+|++||||||++|++--++
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 47899999999999999875443
No 347
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=89.71 E-value=0.21 Score=50.44 Aligned_cols=21 Identities=19% Similarity=0.490 Sum_probs=18.5
Q ss_pred eEEEeeccCCChhhHHHHHHH
Q 042025 430 KLLLLGLQGAGTSTIFKQAKF 450 (844)
Q Consensus 430 KLLLLGsgeSGKSTI~KQmKi 450 (844)
.++|+|++|||||||+|.+--
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~ 24 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQ 24 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 578999999999999998843
No 348
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=89.71 E-value=0.82 Score=51.00 Aligned_cols=37 Identities=22% Similarity=0.283 Sum_probs=27.5
Q ss_pred ceEEEEEeCCCC------CCCcccceeccCCccEEEEEeeccc
Q 042025 646 TKYQLIRVNAKG------MNEGCKWVEMFEDVRVVVFCVALSD 682 (844)
Q Consensus 646 ~~~~liDVGGQ~------rseR~KW~~~FedV~aIIFVVdLSD 682 (844)
..+++||+.|+. +....+.+..+.++|++|+|||.++
T Consensus 69 v~i~l~D~aGlv~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~ 111 (318)
T cd01899 69 VPVELIDVAGLVPGAHEGKGLGNKFLDDLRDADALIHVVDASG 111 (318)
T ss_pred ceEEEEECCCCCCCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 569999999972 1122344556889999999999985
No 349
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=89.71 E-value=0.25 Score=48.54 Aligned_cols=21 Identities=29% Similarity=0.423 Sum_probs=19.1
Q ss_pred eeEEEeeccCCChhhHHHHHH
Q 042025 429 QKLLLLGLQGAGTSTIFKQAK 449 (844)
Q Consensus 429 iKLLLLGsgeSGKSTI~KQmK 449 (844)
.||+|+|.+++|||||++++.
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~ 22 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFV 22 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 589999999999999998765
No 350
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=89.69 E-value=0.22 Score=48.01 Aligned_cols=20 Identities=40% Similarity=0.783 Sum_probs=18.8
Q ss_pred eEEEeeccCCChhhHHHHHH
Q 042025 430 KLLLLGLQGAGTSTIFKQAK 449 (844)
Q Consensus 430 KLLLLGsgeSGKSTI~KQmK 449 (844)
||+|+|.+++|||||++++.
T Consensus 1 kv~lvG~~~~GKTsl~~~l~ 20 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQ 20 (158)
T ss_pred CEEEECCCCCCHHHHHHHHc
Confidence 79999999999999999984
No 351
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=89.68 E-value=0.24 Score=47.57 Aligned_cols=20 Identities=10% Similarity=0.220 Sum_probs=18.0
Q ss_pred eeEEEeeccCCChhhHHHHH
Q 042025 429 QKLLLLGLQGAGTSTIFKQA 448 (844)
Q Consensus 429 iKLLLLGsgeSGKSTI~KQm 448 (844)
+||+++|.++||||||+..+
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l 20 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMF 20 (164)
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 58999999999999999754
No 352
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=89.67 E-value=0.23 Score=47.53 Aligned_cols=20 Identities=35% Similarity=0.617 Sum_probs=18.7
Q ss_pred eeEEEeeccCCChhhHHHHH
Q 042025 429 QKLLLLGLQGAGTSTIFKQA 448 (844)
Q Consensus 429 iKLLLLGsgeSGKSTI~KQm 448 (844)
+||+++|..++||||++.++
T Consensus 1 ~ki~v~G~~~~GKSsli~~l 20 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRF 20 (161)
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 59999999999999999886
No 353
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=89.62 E-value=0.24 Score=49.63 Aligned_cols=21 Identities=19% Similarity=0.455 Sum_probs=19.2
Q ss_pred eeEEEeeccCCChhhHHHHHH
Q 042025 429 QKLLLLGLQGAGTSTIFKQAK 449 (844)
Q Consensus 429 iKLLLLGsgeSGKSTI~KQmK 449 (844)
.||+++|.+++||||+++++.
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~ 22 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFT 22 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 599999999999999999874
No 354
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=89.57 E-value=0.42 Score=49.25 Aligned_cols=26 Identities=8% Similarity=0.129 Sum_probs=22.4
Q ss_pred cEEEEEEeecCCCCHHHHHHHHHHHH
Q 042025 787 KLFVWQARARDRVTVDEAFKYIREVL 812 (844)
Q Consensus 787 klyvh~T~AtDte~I~evF~~V~e~I 812 (844)
.+.++.+||+++.++++.|+|+.+..
T Consensus 181 ~~~i~~~Sa~~g~gv~~l~~~i~~~~ 206 (207)
T TIGR00073 181 EAEIILMSLKTGEGLDEWLEFLEGQV 206 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 35589999999999999999998753
No 355
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=89.50 E-value=0.23 Score=46.78 Aligned_cols=20 Identities=15% Similarity=0.375 Sum_probs=17.9
Q ss_pred eEEEeeccCCChhhHHHHHH
Q 042025 430 KLLLLGLQGAGTSTIFKQAK 449 (844)
Q Consensus 430 KLLLLGsgeSGKSTI~KQmK 449 (844)
+|+|+|..++||||+++++.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~ 20 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALT 20 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHh
Confidence 48999999999999999764
No 356
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.50 E-value=2.1 Score=45.03 Aligned_cols=78 Identities=12% Similarity=0.103 Sum_probs=47.2
Q ss_pred CceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcE
Q 042025 645 LTKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPF 724 (844)
Q Consensus 645 ~~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpi 724 (844)
.++|.+||.-||...-+.+=. ||=...+-|++.|+..|--+- +.-|.+.. +-.+|. |.||
T Consensus 58 ~irf~~wdtagqEk~gglrdg-yyI~~qcAiimFdVtsr~t~~-----------n~~rwhrd---~~rv~~-----NiPi 117 (216)
T KOG0096|consen 58 QIRFNVWDTAGQEKKGGLRDG-YYIQGQCAIIMFDVTSRFTYK-----------NVPRWHRD---LVRVRE-----NIPI 117 (216)
T ss_pred cEEEEeeecccceeecccccc-cEEecceeEEEeeeeehhhhh-----------cchHHHHH---HHHHhc-----CCCe
Confidence 489999999999333333333 444444444445665433221 24455443 334444 5899
Q ss_pred EEEecccchhhhhhhccc
Q 042025 725 VLILNKYDLFEEKVNRVH 742 (844)
Q Consensus 725 ILfLNK~DLfeeKI~~sp 742 (844)
+|-.||.|+-..|++..+
T Consensus 118 v~cGNKvDi~~r~~k~k~ 135 (216)
T KOG0096|consen 118 VLCGNKVDIKARKVKAKP 135 (216)
T ss_pred eeeccceecccccccccc
Confidence 999999999887765533
No 357
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=89.49 E-value=0.26 Score=44.25 Aligned_cols=26 Identities=23% Similarity=0.450 Sum_probs=20.9
Q ss_pred eeEEEeeccCCChhhHHHHHHHHhcC
Q 042025 429 QKLLLLGLQGAGTSTIFKQAKFLYGN 454 (844)
Q Consensus 429 iKLLLLGsgeSGKSTI~KQmKiLy~~ 454 (844)
..++|.|+.|+||||+++.+-.....
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~ 28 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGP 28 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCC
Confidence 46899999999999999977544443
No 358
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=89.48 E-value=0.25 Score=47.68 Aligned_cols=21 Identities=38% Similarity=0.480 Sum_probs=18.8
Q ss_pred eeeEEEeeccCCChhhHHHHH
Q 042025 428 VQKLLLLGLQGAGTSTIFKQA 448 (844)
Q Consensus 428 ~iKLLLLGsgeSGKSTI~KQm 448 (844)
++||+++|..++|||||++.+
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~ 21 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQF 21 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHH
Confidence 479999999999999998775
No 359
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=89.47 E-value=0.26 Score=48.00 Aligned_cols=20 Identities=20% Similarity=0.406 Sum_probs=18.1
Q ss_pred eeEEEeeccCCChhhHHHHH
Q 042025 429 QKLLLLGLQGAGTSTIFKQA 448 (844)
Q Consensus 429 iKLLLLGsgeSGKSTI~KQm 448 (844)
.||+++|..++|||||++++
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~ 21 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVF 21 (175)
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 58999999999999999754
No 360
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=89.46 E-value=0.24 Score=49.41 Aligned_cols=21 Identities=29% Similarity=0.558 Sum_probs=19.2
Q ss_pred eeEEEeeccCCChhhHHHHHH
Q 042025 429 QKLLLLGLQGAGTSTIFKQAK 449 (844)
Q Consensus 429 iKLLLLGsgeSGKSTI~KQmK 449 (844)
+||+++|..++|||||+.++.
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~ 21 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFT 21 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 589999999999999999874
No 361
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=89.44 E-value=0.24 Score=48.25 Aligned_cols=21 Identities=24% Similarity=0.536 Sum_probs=19.1
Q ss_pred eeEEEeeccCCChhhHHHHHH
Q 042025 429 QKLLLLGLQGAGTSTIFKQAK 449 (844)
Q Consensus 429 iKLLLLGsgeSGKSTI~KQmK 449 (844)
+|++++|.+++|||||++++.
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~ 21 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLV 21 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 499999999999999999864
No 362
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=89.40 E-value=0.26 Score=46.31 Aligned_cols=21 Identities=19% Similarity=0.453 Sum_probs=18.9
Q ss_pred eeEEEeeccCCChhhHHHHHH
Q 042025 429 QKLLLLGLQGAGTSTIFKQAK 449 (844)
Q Consensus 429 iKLLLLGsgeSGKSTI~KQmK 449 (844)
+||+|+|..++||||++..+.
T Consensus 2 ~~i~l~G~~~~GKstli~~l~ 22 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALA 22 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 589999999999999999763
No 363
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=89.31 E-value=0.28 Score=48.89 Aligned_cols=22 Identities=14% Similarity=0.243 Sum_probs=19.6
Q ss_pred eeeEEEeeccCCChhhHHHHHH
Q 042025 428 VQKLLLLGLQGAGTSTIFKQAK 449 (844)
Q Consensus 428 ~iKLLLLGsgeSGKSTI~KQmK 449 (844)
.+|++++|.+++|||||++++.
T Consensus 1 ~~ki~vvG~~~vGKTsl~~~~~ 22 (175)
T cd01874 1 TIKCVVVGDGAVGKTCLLISYT 22 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3799999999999999998764
No 364
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=89.30 E-value=0.25 Score=48.52 Aligned_cols=20 Identities=40% Similarity=0.612 Sum_probs=18.4
Q ss_pred eeEEEeeccCCChhhHHHHH
Q 042025 429 QKLLLLGLQGAGTSTIFKQA 448 (844)
Q Consensus 429 iKLLLLGsgeSGKSTI~KQm 448 (844)
+||+++|..++|||||+.++
T Consensus 1 ~ki~vvG~~~vGKTsli~~~ 20 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRH 20 (166)
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 59999999999999999865
No 365
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=89.26 E-value=2 Score=46.54 Aligned_cols=26 Identities=19% Similarity=0.196 Sum_probs=21.0
Q ss_pred EEEEeecCCCCHHHHHHHHHHHHhhh
Q 042025 790 VWQARARDRVTVDEAFKYIREVLKWD 815 (844)
Q Consensus 790 vh~T~AtDte~I~evF~~V~e~Ik~~ 815 (844)
+.++||.++.+++..++.+.+.+...
T Consensus 80 vi~iSa~~~~gi~~L~~~i~~~~~~~ 105 (276)
T TIGR03596 80 ALAINAKKGKGVKKIIKAAKKLLKEK 105 (276)
T ss_pred EEEEECCCcccHHHHHHHHHHHHHHh
Confidence 67789999999999888888876543
No 366
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=89.23 E-value=0.25 Score=49.23 Aligned_cols=20 Identities=20% Similarity=0.532 Sum_probs=18.8
Q ss_pred eeEEEeeccCCChhhHHHHH
Q 042025 429 QKLLLLGLQGAGTSTIFKQA 448 (844)
Q Consensus 429 iKLLLLGsgeSGKSTI~KQm 448 (844)
+||+++|.+++|||||++++
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~ 20 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERY 20 (193)
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 58999999999999999986
No 367
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=89.23 E-value=0.24 Score=48.58 Aligned_cols=20 Identities=45% Similarity=0.773 Sum_probs=18.1
Q ss_pred eEEEeeccCCChhhHHHHHH
Q 042025 430 KLLLLGLQGAGTSTIFKQAK 449 (844)
Q Consensus 430 KLLLLGsgeSGKSTI~KQmK 449 (844)
||+|+|..++|||||++++.
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~ 20 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLK 20 (169)
T ss_pred CEEEECCCCCCHHHHHHHHh
Confidence 78999999999999999763
No 368
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=89.18 E-value=0.95 Score=45.24 Aligned_cols=100 Identities=18% Similarity=0.325 Sum_probs=65.0
Q ss_pred EEEeCCCCCCCcccceec----cCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcEE
Q 042025 650 LIRVNAKGMNEGCKWVEM----FEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFV 725 (844)
Q Consensus 650 liDVGGQ~rseR~KW~~~----FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpiI 725 (844)
++|+-|. --|.+.|.+. =.+++.|++|.|.++-.... .++ |-.+ | +.|+|
T Consensus 40 ~IDTPGE-yiE~~~~y~aLi~ta~dad~V~ll~dat~~~~~~----pP~---------------fa~~-----f-~~pvI 93 (143)
T PF10662_consen 40 TIDTPGE-YIENPRFYHALIVTAQDADVVLLLQDATEPRSVF----PPG---------------FASM-----F-NKPVI 93 (143)
T ss_pred EEECChh-heeCHHHHHHHHHHHhhCCEEEEEecCCCCCccC----Cch---------------hhcc-----c-CCCEE
Confidence 5888887 5555555442 24899999999999644333 111 2222 3 47999
Q ss_pred EEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHHHHH
Q 042025 726 LILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVDEAF 805 (844)
Q Consensus 726 LfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~evF 805 (844)
=+.||.|+... +...+.|.+++ .... -++ ++.+|+.++++|++..
T Consensus 94 GVITK~Dl~~~-------------------------~~~i~~a~~~L-----~~aG---~~~--if~vS~~~~eGi~eL~ 138 (143)
T PF10662_consen 94 GVITKIDLPSD-------------------------DANIERAKKWL-----KNAG---VKE--IFEVSAVTGEGIEELK 138 (143)
T ss_pred EEEECccCccc-------------------------hhhHHHHHHHH-----HHcC---CCC--eEEEECCCCcCHHHHH
Confidence 99999999721 00145554444 3221 133 5889999999999999
Q ss_pred HHHHH
Q 042025 806 KYIRE 810 (844)
Q Consensus 806 ~~V~e 810 (844)
+||.+
T Consensus 139 ~~L~~ 143 (143)
T PF10662_consen 139 DYLEE 143 (143)
T ss_pred HHHhC
Confidence 99864
No 369
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=88.95 E-value=0.3 Score=47.73 Aligned_cols=21 Identities=29% Similarity=0.502 Sum_probs=19.5
Q ss_pred eeeEEEeeccCCChhhHHHHH
Q 042025 428 VQKLLLLGLQGAGTSTIFKQA 448 (844)
Q Consensus 428 ~iKLLLLGsgeSGKSTI~KQm 448 (844)
.+|++++|.+++|||||+.++
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l 24 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQF 24 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHH
Confidence 479999999999999999976
No 370
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=88.91 E-value=0.63 Score=44.88 Aligned_cols=48 Identities=25% Similarity=0.301 Sum_probs=29.6
Q ss_pred cCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcEEEEecccchhh
Q 042025 668 FEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFVLILNKYDLFE 735 (844)
Q Consensus 668 FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpiILfLNK~DLfe 735 (844)
.+++|.||||+|..+ .... .+ .. +...+... ..+.|+++++||.|+..
T Consensus 9 i~~aD~vl~ViD~~~-------p~~~------~~-----~~-l~~~l~~~-~~~k~~iivlNK~DL~~ 56 (141)
T cd01857 9 VERSDIVVQIVDARN-------PLLF------RP-----PD-LERYVKEV-DPRKKNILLLNKADLLT 56 (141)
T ss_pred HhhCCEEEEEEEccC-------Cccc------CC-----HH-HHHHHHhc-cCCCcEEEEEechhcCC
Confidence 468999999999864 1110 11 11 22222211 25689999999999854
No 371
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=88.89 E-value=3 Score=42.32 Aligned_cols=73 Identities=10% Similarity=0.074 Sum_probs=45.0
Q ss_pred ceEEEEEeCCCCCCC----------cccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHc
Q 042025 646 TKYQLIRVNAKGMNE----------GCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIR 715 (844)
Q Consensus 646 ~~~~liDVGGQ~rse----------R~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n 715 (844)
..+.++|..|-.... .+.+..+..++++||||+++..+ +..-.+.++.+..++.
T Consensus 49 ~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~~~g~~~illVi~~~~~----------------t~~d~~~l~~l~~~fg 112 (196)
T cd01852 49 RRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLSAPGPHAFLLVVPLGRF----------------TEEEEQAVETLQELFG 112 (196)
T ss_pred eEEEEEECcCCCCccCChHHHHHHHHHHHHhcCCCCEEEEEEEECCCc----------------CHHHHHHHHHHHHHhC
Confidence 468888888752110 01123345789999999997652 2223455666666665
Q ss_pred CCCCCCCcEEEEecccchhhh
Q 042025 716 HPCFKDTPFVLILNKYDLFEE 736 (844)
Q Consensus 716 ~p~f~~tpiILfLNK~DLfee 736 (844)
...+ .++||++||.|-+..
T Consensus 113 ~~~~--~~~ivv~T~~d~l~~ 131 (196)
T cd01852 113 EKVL--DHTIVLFTRGDDLEG 131 (196)
T ss_pred hHhH--hcEEEEEECccccCC
Confidence 4333 268888898887653
No 372
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=88.87 E-value=0.28 Score=47.30 Aligned_cols=21 Identities=29% Similarity=0.479 Sum_probs=18.2
Q ss_pred EEEeeccCCChhhHHHHHHHH
Q 042025 431 LLLLGLQGAGTSTIFKQAKFL 451 (844)
Q Consensus 431 LLLLGsgeSGKSTI~KQmKiL 451 (844)
++|.|..||||||+.|++.-.
T Consensus 2 i~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhh
Confidence 688999999999999987544
No 373
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=88.82 E-value=0.3 Score=48.89 Aligned_cols=21 Identities=29% Similarity=0.599 Sum_probs=19.7
Q ss_pred eeeEEEeeccCCChhhHHHHH
Q 042025 428 VQKLLLLGLQGAGTSTIFKQA 448 (844)
Q Consensus 428 ~iKLLLLGsgeSGKSTI~KQm 448 (844)
.+||+++|.++||||||++++
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~ 23 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRL 23 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHH
Confidence 479999999999999999987
No 374
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=88.81 E-value=3.5 Score=42.10 Aligned_cols=20 Identities=25% Similarity=0.436 Sum_probs=18.8
Q ss_pred eeEEEeeccCCChhhHHHHH
Q 042025 429 QKLLLLGLQGAGTSTIFKQA 448 (844)
Q Consensus 429 iKLLLLGsgeSGKSTI~KQm 448 (844)
+||.++|.+++||||+++.+
T Consensus 2 ~kI~i~G~~g~GKSSLin~L 21 (197)
T cd04104 2 LNIAVTGESGAGKSSFINAL 21 (197)
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 68999999999999999986
No 375
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=88.75 E-value=0.29 Score=45.70 Aligned_cols=19 Identities=32% Similarity=0.622 Sum_probs=17.4
Q ss_pred eEEEeeccCCChhhHHHHH
Q 042025 430 KLLLLGLQGAGTSTIFKQA 448 (844)
Q Consensus 430 KLLLLGsgeSGKSTI~KQm 448 (844)
.|+|+|..++||||+++++
T Consensus 1 ~i~i~G~~~~GKssl~~~l 19 (159)
T cd04159 1 EITLVGLQNSGKTTLVNVI 19 (159)
T ss_pred CEEEEcCCCCCHHHHHHHH
Confidence 3789999999999999987
No 376
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=88.74 E-value=0.28 Score=50.19 Aligned_cols=25 Identities=24% Similarity=0.299 Sum_probs=21.4
Q ss_pred cceeeEEEeeccCCChhhHHHHHHH
Q 042025 426 KKVQKLLLLGLQGAGTSTIFKQAKF 450 (844)
Q Consensus 426 k~~iKLLLLGsgeSGKSTI~KQmKi 450 (844)
.+.-+++|+|+++|||||++|++-.
T Consensus 27 ~~~~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 27 GSGRLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred cCCeEEEEECCCCCccHHHHHHHHH
Confidence 3346899999999999999999873
No 377
>PRK03839 putative kinase; Provisional
Probab=88.73 E-value=0.36 Score=48.27 Aligned_cols=24 Identities=25% Similarity=0.340 Sum_probs=20.2
Q ss_pred eEEEeeccCCChhhHHHHHHHHhc
Q 042025 430 KLLLLGLQGAGTSTIFKQAKFLYG 453 (844)
Q Consensus 430 KLLLLGsgeSGKSTI~KQmKiLy~ 453 (844)
+|+|+|.+||||||+.+++--.++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999998754443
No 378
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=88.71 E-value=0.26 Score=48.41 Aligned_cols=22 Identities=14% Similarity=0.323 Sum_probs=17.6
Q ss_pred eEEEeeccCCChhhHHHHHHHH
Q 042025 430 KLLLLGLQGAGTSTIFKQAKFL 451 (844)
Q Consensus 430 KLLLLGsgeSGKSTI~KQmKiL 451 (844)
||.|.|+.++||||+++++.-.
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7999999999999999998855
No 379
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=88.63 E-value=0.29 Score=46.80 Aligned_cols=20 Identities=50% Similarity=0.786 Sum_probs=18.4
Q ss_pred eEEEeeccCCChhhHHHHHH
Q 042025 430 KLLLLGLQGAGTSTIFKQAK 449 (844)
Q Consensus 430 KLLLLGsgeSGKSTI~KQmK 449 (844)
||+++|..++||||+++++.
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~ 20 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLK 20 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHh
Confidence 68999999999999999874
No 380
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=88.63 E-value=0.28 Score=50.71 Aligned_cols=20 Identities=25% Similarity=0.421 Sum_probs=18.0
Q ss_pred eEEEeeccCCChhhHHHHHH
Q 042025 430 KLLLLGLQGAGTSTIFKQAK 449 (844)
Q Consensus 430 KLLLLGsgeSGKSTI~KQmK 449 (844)
-++|+|+++|||||++|++-
T Consensus 27 ~~~ltGpNg~GKSTllr~i~ 46 (199)
T cd03283 27 GILITGSNMSGKSTFLRTIG 46 (199)
T ss_pred EEEEECCCCCChHHHHHHHH
Confidence 46799999999999999985
No 381
>PTZ00088 adenylate kinase 1; Provisional
Probab=88.63 E-value=0.34 Score=51.46 Aligned_cols=28 Identities=25% Similarity=0.278 Sum_probs=23.2
Q ss_pred cceeeEEEeeccCCChhhHHHHHHHHhc
Q 042025 426 KKVQKLLLLGLQGAGTSTIFKQAKFLYG 453 (844)
Q Consensus 426 k~~iKLLLLGsgeSGKSTI~KQmKiLy~ 453 (844)
+..+||+|+|++||||||+.+++--.|+
T Consensus 4 ~~~mrIvl~G~PGsGK~T~a~~La~~~g 31 (229)
T PTZ00088 4 KGPLKIVLFGAPGVGKGTFAEILSKKEN 31 (229)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3457899999999999999998755554
No 382
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=88.61 E-value=0.3 Score=48.40 Aligned_cols=20 Identities=20% Similarity=0.473 Sum_probs=18.7
Q ss_pred eeEEEeeccCCChhhHHHHH
Q 042025 429 QKLLLLGLQGAGTSTIFKQA 448 (844)
Q Consensus 429 iKLLLLGsgeSGKSTI~KQm 448 (844)
+||+++|..++||||++.++
T Consensus 1 ~ki~vvG~~~vGKTsli~~l 20 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVY 20 (187)
T ss_pred CeEEEECCCCCCHHHHHHHH
Confidence 59999999999999999976
No 383
>PRK13949 shikimate kinase; Provisional
Probab=88.60 E-value=0.3 Score=49.16 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=19.6
Q ss_pred eEEEeeccCCChhhHHHHHHHHh
Q 042025 430 KLLLLGLQGAGTSTIFKQAKFLY 452 (844)
Q Consensus 430 KLLLLGsgeSGKSTI~KQmKiLy 452 (844)
||+|+|..||||||+.|.+--.+
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l 25 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAREL 25 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 79999999999999999864333
No 384
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=88.41 E-value=0.36 Score=46.45 Aligned_cols=21 Identities=33% Similarity=0.445 Sum_probs=18.2
Q ss_pred eeeEEEeeccCCChhhHHHHH
Q 042025 428 VQKLLLLGLQGAGTSTIFKQA 448 (844)
Q Consensus 428 ~iKLLLLGsgeSGKSTI~KQm 448 (844)
.+|++|+|.+++|||||+..+
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~ 21 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQF 21 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 379999999999999997554
No 385
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=88.35 E-value=0.44 Score=51.34 Aligned_cols=74 Identities=15% Similarity=0.328 Sum_probs=46.9
Q ss_pred ceEEEEEeCCCCCC-----CcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCC
Q 042025 646 TKYQLIRVNAKGMN-----EGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFK 720 (844)
Q Consensus 646 ~~~~liDVGGQ~rs-----eR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~ 720 (844)
+-+.+||.||| .. .+..=-+-|.+|+++|||.|.+. +++ .--++--..-++.++.+. .
T Consensus 53 l~LnlwDcGgq-e~fmen~~~~q~d~iF~nV~vli~vFDves-~e~-------------~~D~~~yqk~Le~ll~~S--P 115 (295)
T KOG3886|consen 53 LVLNLWDCGGQ-EEFMENYLSSQEDNIFRNVQVLIYVFDVES-REM-------------EKDFHYYQKCLEALLQNS--P 115 (295)
T ss_pred heeehhccCCc-HHHHHHHHhhcchhhheeheeeeeeeeccc-hhh-------------hhhHHHHHHHHHHHHhcC--C
Confidence 46789999999 42 12344567999999999999873 111 111222233344455542 2
Q ss_pred CCcEEEEecccchhhh
Q 042025 721 DTPFVLILNKYDLFEE 736 (844)
Q Consensus 721 ~tpiILfLNK~DLfee 736 (844)
++.+..++.|+||..+
T Consensus 116 ~AkiF~l~hKmDLv~~ 131 (295)
T KOG3886|consen 116 EAKIFCLLHKMDLVQE 131 (295)
T ss_pred cceEEEEEeechhccc
Confidence 4568999999998653
No 386
>PRK14532 adenylate kinase; Provisional
Probab=88.34 E-value=0.32 Score=48.89 Aligned_cols=23 Identities=30% Similarity=0.281 Sum_probs=19.3
Q ss_pred eEEEeeccCCChhhHHHHHHHHh
Q 042025 430 KLLLLGLQGAGTSTIFKQAKFLY 452 (844)
Q Consensus 430 KLLLLGsgeSGKSTI~KQmKiLy 452 (844)
+|+|+|.+||||||+.+.+---|
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~ 24 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEER 24 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 69999999999999998874333
No 387
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=88.25 E-value=0.34 Score=45.70 Aligned_cols=19 Identities=21% Similarity=0.607 Sum_probs=17.9
Q ss_pred eEEEeeccCCChhhHHHHH
Q 042025 430 KLLLLGLQGAGTSTIFKQA 448 (844)
Q Consensus 430 KLLLLGsgeSGKSTI~KQm 448 (844)
||+|+|.+++||||++.++
T Consensus 2 kv~liG~~~vGKSsL~~~l 20 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQAL 20 (142)
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 8999999999999999875
No 388
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=88.18 E-value=0.32 Score=48.24 Aligned_cols=21 Identities=29% Similarity=0.390 Sum_probs=18.0
Q ss_pred eEEEeeccCCChhhHHHHHHH
Q 042025 430 KLLLLGLQGAGTSTIFKQAKF 450 (844)
Q Consensus 430 KLLLLGsgeSGKSTI~KQmKi 450 (844)
.++|+|++||||||++|.+.-
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~ 23 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLE 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 478999999999999887753
No 389
>PTZ00369 Ras-like protein; Provisional
Probab=88.17 E-value=0.36 Score=48.43 Aligned_cols=23 Identities=30% Similarity=0.339 Sum_probs=19.9
Q ss_pred ceeeEEEeeccCCChhhHHHHHH
Q 042025 427 KVQKLLLLGLQGAGTSTIFKQAK 449 (844)
Q Consensus 427 ~~iKLLLLGsgeSGKSTI~KQmK 449 (844)
..+||+++|.+++|||||++.+.
T Consensus 4 ~~~Ki~iiG~~~~GKTsLi~~~~ 26 (189)
T PTZ00369 4 TEYKLVVVGGGGVGKSALTIQFI 26 (189)
T ss_pred cceEEEEECCCCCCHHHHHHHHh
Confidence 35899999999999999988543
No 390
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=88.17 E-value=0.29 Score=47.97 Aligned_cols=22 Identities=32% Similarity=0.540 Sum_probs=18.6
Q ss_pred EEEeeccCCChhhHHHHHHHHh
Q 042025 431 LLLLGLQGAGTSTIFKQAKFLY 452 (844)
Q Consensus 431 LLLLGsgeSGKSTI~KQmKiLy 452 (844)
|+|.|..||||||+.+++.-..
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 5789999999999999876443
No 391
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=88.06 E-value=0.33 Score=48.12 Aligned_cols=21 Identities=19% Similarity=0.322 Sum_probs=18.2
Q ss_pred eEEEeeccCCChhhHHHHHHH
Q 042025 430 KLLLLGLQGAGTSTIFKQAKF 450 (844)
Q Consensus 430 KLLLLGsgeSGKSTI~KQmKi 450 (844)
.|+++|.+||||||+.+.+--
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578899999999999987753
No 392
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=88.06 E-value=0.35 Score=48.00 Aligned_cols=23 Identities=13% Similarity=0.289 Sum_probs=20.7
Q ss_pred cceeeEEEeeccCCChhhHHHHH
Q 042025 426 KKVQKLLLLGLQGAGTSTIFKQA 448 (844)
Q Consensus 426 k~~iKLLLLGsgeSGKSTI~KQm 448 (844)
....||+|+|.+++||||+++.+
T Consensus 22 ~~~~~v~ivG~~~~GKSsli~~l 44 (196)
T PRK00454 22 DDGPEIAFAGRSNVGKSSLINAL 44 (196)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHH
Confidence 46789999999999999999965
No 393
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=87.84 E-value=0.4 Score=47.85 Aligned_cols=24 Identities=38% Similarity=0.623 Sum_probs=20.8
Q ss_pred eEEEeeccCCChhhHHHHHHHHhc
Q 042025 430 KLLLLGLQGAGTSTIFKQAKFLYG 453 (844)
Q Consensus 430 KLLLLGsgeSGKSTI~KQmKiLy~ 453 (844)
+|+|+|..||||||+.+++.-.|+
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~~~ 24 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKKYG 24 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcC
Confidence 589999999999999998765554
No 394
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=87.81 E-value=0.41 Score=47.59 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=19.4
Q ss_pred EEEeeccCCChhhHHHHHHHHhc
Q 042025 431 LLLLGLQGAGTSTIFKQAKFLYG 453 (844)
Q Consensus 431 LLLLGsgeSGKSTI~KQmKiLy~ 453 (844)
|+++|.+||||||+.+++.--|+
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~ 24 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFG 24 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 68999999999999998765443
No 395
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=87.78 E-value=0.35 Score=46.11 Aligned_cols=20 Identities=40% Similarity=0.757 Sum_probs=17.9
Q ss_pred eEEEeeccCCChhhHHHHHH
Q 042025 430 KLLLLGLQGAGTSTIFKQAK 449 (844)
Q Consensus 430 KLLLLGsgeSGKSTI~KQmK 449 (844)
+|+|+|..++||||+++++.
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~ 20 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLK 20 (162)
T ss_pred CEEEECCCCCCHHHHHHHHc
Confidence 58999999999999998863
No 396
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=87.76 E-value=0.36 Score=47.51 Aligned_cols=20 Identities=35% Similarity=0.612 Sum_probs=18.1
Q ss_pred eEEEeeccCCChhhHHHHHH
Q 042025 430 KLLLLGLQGAGTSTIFKQAK 449 (844)
Q Consensus 430 KLLLLGsgeSGKSTI~KQmK 449 (844)
+|+++|.+++|||||++++.
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~ 20 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQ 20 (167)
T ss_pred CEEEECCCCCCHHHHHHHHh
Confidence 58999999999999999774
No 397
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=87.73 E-value=0.36 Score=49.73 Aligned_cols=20 Identities=20% Similarity=0.448 Sum_probs=18.7
Q ss_pred eeEEEeeccCCChhhHHHHH
Q 042025 429 QKLLLLGLQGAGTSTIFKQA 448 (844)
Q Consensus 429 iKLLLLGsgeSGKSTI~KQm 448 (844)
+||+++|.+++|||||+.++
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l 20 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRF 20 (215)
T ss_pred CEEEEECcCCCCHHHHHHHH
Confidence 58999999999999999986
No 398
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=87.72 E-value=2.7 Score=49.70 Aligned_cols=122 Identities=16% Similarity=0.111 Sum_probs=73.0
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcEE
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFV 725 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpiI 725 (844)
-.+.|+|.-|+ ...-..-..=.+=+|.+|.|||..| | ..-+-.||++..+. .++||+
T Consensus 55 ~~itFiDTPGH-eAFt~mRaRGa~vtDIaILVVa~dD-----------G----v~pQTiEAI~hak~-------a~vP~i 111 (509)
T COG0532 55 PGITFIDTPGH-EAFTAMRARGASVTDIAILVVAADD-----------G----VMPQTIEAINHAKA-------AGVPIV 111 (509)
T ss_pred ceEEEEcCCcH-HHHHHHHhcCCccccEEEEEEEccC-----------C----cchhHHHHHHHHHH-------CCCCEE
Confidence 36889999998 3221111111234789999999764 2 12333455554443 479999
Q ss_pred EEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHHHHH
Q 042025 726 LILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVDEAF 805 (844)
Q Consensus 726 LfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~evF 805 (844)
+..||+|..+.. |.. ...=+.+ ..+....-++.+-+-.+||..++||.+.+
T Consensus 112 VAiNKiDk~~~n----p~~-----------------------v~~el~~--~gl~~E~~gg~v~~VpvSA~tg~Gi~eLL 162 (509)
T COG0532 112 VAINKIDKPEAN----PDK-----------------------VKQELQE--YGLVPEEWGGDVIFVPVSAKTGEGIDELL 162 (509)
T ss_pred EEEecccCCCCC----HHH-----------------------HHHHHHH--cCCCHhhcCCceEEEEeeccCCCCHHHHH
Confidence 999999987431 111 0000000 12222122577888899999999999999
Q ss_pred HHHHHHHhhhhhcc
Q 042025 806 KYIREVLKWDDEKE 819 (844)
Q Consensus 806 ~~V~e~Ik~~~~k~ 819 (844)
..+.-.-...++|.
T Consensus 163 ~~ill~aev~elka 176 (509)
T COG0532 163 ELILLLAEVLELKA 176 (509)
T ss_pred HHHHHHHHHHhhhc
Confidence 88775544444443
No 399
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=87.68 E-value=0.39 Score=48.53 Aligned_cols=21 Identities=33% Similarity=0.626 Sum_probs=19.0
Q ss_pred eeeEEEeeccCCChhhHHHHH
Q 042025 428 VQKLLLLGLQGAGTSTIFKQA 448 (844)
Q Consensus 428 ~iKLLLLGsgeSGKSTI~KQm 448 (844)
..+++|+|.+++|||||++.+
T Consensus 41 ~~~I~iiG~~g~GKStLl~~l 61 (204)
T cd01878 41 IPTVALVGYTNAGKSTLFNAL 61 (204)
T ss_pred CCeEEEECCCCCCHHHHHHHH
Confidence 579999999999999999764
No 400
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=87.68 E-value=0.36 Score=46.13 Aligned_cols=20 Identities=50% Similarity=0.914 Sum_probs=18.4
Q ss_pred eEEEeeccCCChhhHHHHHH
Q 042025 430 KLLLLGLQGAGTSTIFKQAK 449 (844)
Q Consensus 430 KLLLLGsgeSGKSTI~KQmK 449 (844)
||+++|..++||||+++++-
T Consensus 1 ki~iiG~~~~GKssli~~~~ 20 (158)
T cd00878 1 RILILGLDGAGKTTILYKLK 20 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHh
Confidence 79999999999999998864
No 401
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=87.67 E-value=2.3 Score=49.61 Aligned_cols=67 Identities=21% Similarity=0.257 Sum_probs=44.7
Q ss_pred ceEEEEEeCCCCCC--------CcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCC
Q 042025 646 TKYQLIRVNAKGMN--------EGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHP 717 (844)
Q Consensus 646 ~~~~liDVGGQ~rs--------eR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p 717 (844)
+.++++|+-|-+.. ..|-|. ..+++|.|+||+|.+.. + +. +-..+++ .
T Consensus 265 ~pv~l~DTAGiRet~d~VE~iGIeRs~~-~i~~ADlvL~v~D~~~~---~----~~-----------~d~~~~~-----~ 320 (454)
T COG0486 265 IPVRLVDTAGIRETDDVVERIGIERAKK-AIEEADLVLFVLDASQP---L----DK-----------EDLALIE-----L 320 (454)
T ss_pred EEEEEEecCCcccCccHHHHHHHHHHHH-HHHhCCEEEEEEeCCCC---C----ch-----------hhHHHHH-----h
Confidence 68999999998311 123333 35789999999999963 1 10 1123444 2
Q ss_pred CCCCCcEEEEecccchhhh
Q 042025 718 CFKDTPFVLILNKYDLFEE 736 (844)
Q Consensus 718 ~f~~tpiILfLNK~DLfee 736 (844)
...+.|+++++||.||-.+
T Consensus 321 ~~~~~~~i~v~NK~DL~~~ 339 (454)
T COG0486 321 LPKKKPIIVVLNKADLVSK 339 (454)
T ss_pred cccCCCEEEEEechhcccc
Confidence 2346899999999999764
No 402
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=87.66 E-value=0.37 Score=47.27 Aligned_cols=20 Identities=20% Similarity=0.330 Sum_probs=17.9
Q ss_pred eeEEEeeccCCChhhHHHHH
Q 042025 429 QKLLLLGLQGAGTSTIFKQA 448 (844)
Q Consensus 429 iKLLLLGsgeSGKSTI~KQm 448 (844)
+|++++|..++||||+++++
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~ 20 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSY 20 (173)
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 58999999999999998654
No 403
>PRK14530 adenylate kinase; Provisional
Probab=87.65 E-value=0.45 Score=49.24 Aligned_cols=24 Identities=38% Similarity=0.567 Sum_probs=20.8
Q ss_pred eEEEeeccCCChhhHHHHHHHHhc
Q 042025 430 KLLLLGLQGAGTSTIFKQAKFLYG 453 (844)
Q Consensus 430 KLLLLGsgeSGKSTI~KQmKiLy~ 453 (844)
+|+|+|++||||||+.+.+--.|+
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~ 28 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFG 28 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 799999999999999998855554
No 404
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=87.59 E-value=0.35 Score=51.75 Aligned_cols=29 Identities=34% Similarity=0.518 Sum_probs=23.7
Q ss_pred cceeeEEEeeccCCChhhHHHHHHHHhcC
Q 042025 426 KKVQKLLLLGLQGAGTSTIFKQAKFLYGN 454 (844)
Q Consensus 426 k~~iKLLLLGsgeSGKSTI~KQmKiLy~~ 454 (844)
+.--.++|+|.+||||||++|.+--|..+
T Consensus 28 ~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p 56 (235)
T COG1122 28 EKGERVLLIGPNGSGKSTLLKLLNGLLKP 56 (235)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHcCcCcC
Confidence 34457899999999999999998766654
No 405
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=87.58 E-value=0.43 Score=48.19 Aligned_cols=22 Identities=14% Similarity=0.188 Sum_probs=19.9
Q ss_pred eeeEEEeeccCCChhhHHHHHH
Q 042025 428 VQKLLLLGLQGAGTSTIFKQAK 449 (844)
Q Consensus 428 ~iKLLLLGsgeSGKSTI~KQmK 449 (844)
.+||+++|.+++|||+|+.++.
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~ 24 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYT 24 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHH
Confidence 4799999999999999999864
No 406
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=87.56 E-value=0.79 Score=56.30 Aligned_cols=68 Identities=18% Similarity=0.215 Sum_probs=45.3
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcEE
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFV 725 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpiI 725 (844)
..+.+||+.|+ ......=...+..+|++|+|||..+- . ..++..+++.+.+ .+.|++
T Consensus 86 ~~i~liDTPG~-~~f~~~~~~al~~aD~~llVvda~~g----------------~--~~~t~~~~~~~~~----~~~p~i 142 (720)
T TIGR00490 86 YLINLIDTPGH-VDFGGDVTRAMRAVDGAIVVVCAVEG----------------V--MPQTETVLRQALK----ENVKPV 142 (720)
T ss_pred eEEEEEeCCCc-cccHHHHHHHHHhcCEEEEEEecCCC----------------C--CccHHHHHHHHHH----cCCCEE
Confidence 57899999999 44333334467889999999997630 0 0123344444333 246889
Q ss_pred EEecccchhhh
Q 042025 726 LILNKYDLFEE 736 (844)
Q Consensus 726 LfLNK~DLfee 736 (844)
||+||+|....
T Consensus 143 vviNKiD~~~~ 153 (720)
T TIGR00490 143 LFINKVDRLIN 153 (720)
T ss_pred EEEEChhcccc
Confidence 99999998753
No 407
>PRK05978 hypothetical protein; Provisional
Probab=87.43 E-value=0.28 Score=49.29 Aligned_cols=35 Identities=26% Similarity=0.612 Sum_probs=29.0
Q ss_pred ccccccccccccceeccCcce-----eeeeeeeecCCccc
Q 042025 183 VSKEKKRRKSRVCYRCGKGKW-----ETKESCLVCDAKYC 217 (844)
Q Consensus 183 ~~~~~~~~~~~~c~~~~~~~~-----~~~~~c~~c~~~~c 217 (844)
..++..+|=++.|.||++|++ .-++.|-+||.+|=
T Consensus 24 ~~~~~~rGl~grCP~CG~G~LF~g~Lkv~~~C~~CG~~~~ 63 (148)
T PRK05978 24 VGRAMWRGFRGRCPACGEGKLFRAFLKPVDHCAACGEDFT 63 (148)
T ss_pred hHHHHHHHHcCcCCCCCCCcccccccccCCCccccCCccc
Confidence 445667777889999999965 78999999999873
No 408
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=87.42 E-value=0.43 Score=49.78 Aligned_cols=26 Identities=23% Similarity=0.604 Sum_probs=22.5
Q ss_pred eEEEeeccCCChhhHHHHHHHHhcCC
Q 042025 430 KLLLLGLQGAGTSTIFKQAKFLYGNK 455 (844)
Q Consensus 430 KLLLLGsgeSGKSTI~KQmKiLy~~g 455 (844)
..+|+|++|||||||++.+-.+.+..
T Consensus 25 ~~~i~GpNGsGKStll~ai~~~l~~~ 50 (243)
T cd03272 25 HNVVVGRNGSGKSNFFAAIRFVLSDE 50 (243)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHcCc
Confidence 67899999999999999998776543
No 409
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=87.40 E-value=0.41 Score=44.13 Aligned_cols=21 Identities=29% Similarity=0.472 Sum_probs=17.7
Q ss_pred EEEeeccCCChhhHHHHHHHH
Q 042025 431 LLLLGLQGAGTSTIFKQAKFL 451 (844)
Q Consensus 431 LLLLGsgeSGKSTI~KQmKiL 451 (844)
|||.|+.|+||||+++.+=-.
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 799999999999999866433
No 410
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=87.40 E-value=1 Score=48.92 Aligned_cols=22 Identities=23% Similarity=0.380 Sum_probs=19.5
Q ss_pred ceeeEEEeeccCCChhhHHHHH
Q 042025 427 KVQKLLLLGLQGAGTSTIFKQA 448 (844)
Q Consensus 427 ~~iKLLLLGsgeSGKSTI~KQm 448 (844)
..+||+|+|.+|+||||++..+
T Consensus 3 ~~f~I~vvG~sg~GKSTliN~L 24 (276)
T cd01850 3 FQFNIMVVGESGLGKSTFINTL 24 (276)
T ss_pred cEEEEEEEcCCCCCHHHHHHHH
Confidence 3579999999999999998875
No 411
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=87.39 E-value=0.42 Score=49.72 Aligned_cols=23 Identities=30% Similarity=0.462 Sum_probs=20.4
Q ss_pred cceeeEEEeeccCCChhhHHHHH
Q 042025 426 KKVQKLLLLGLQGAGTSTIFKQA 448 (844)
Q Consensus 426 k~~iKLLLLGsgeSGKSTI~KQm 448 (844)
...+||+++|..++|||||+.++
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~ 33 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRH 33 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHH
Confidence 45689999999999999999873
No 412
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=87.38 E-value=0.48 Score=43.18 Aligned_cols=34 Identities=26% Similarity=0.343 Sum_probs=25.0
Q ss_pred chhhhhhcceeeEEEeeccCCChhhHHHHHHHHh
Q 042025 419 VPNYLEQKKVQKLLLLGLQGAGTSTIFKQAKFLY 452 (844)
Q Consensus 419 Id~~Le~k~~iKLLLLGsgeSGKSTI~KQmKiLy 452 (844)
|-..+......-+++.|+.|+||||+++.+--.+
T Consensus 10 i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 10 LREALELPPPKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred HHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3344444445679999999999999999886444
No 413
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=87.36 E-value=0.41 Score=47.42 Aligned_cols=20 Identities=15% Similarity=0.361 Sum_probs=18.5
Q ss_pred eEEEeeccCCChhhHHHHHH
Q 042025 430 KLLLLGLQGAGTSTIFKQAK 449 (844)
Q Consensus 430 KLLLLGsgeSGKSTI~KQmK 449 (844)
||+++|..++|||||+.|+.
T Consensus 2 ki~ivG~~~vGKTsli~~~~ 21 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFC 21 (170)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 89999999999999999763
No 414
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=87.24 E-value=0.46 Score=46.19 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=19.5
Q ss_pred EEEeeccCCChhhHHHHHHHHhc
Q 042025 431 LLLLGLQGAGTSTIFKQAKFLYG 453 (844)
Q Consensus 431 LLLLGsgeSGKSTI~KQmKiLy~ 453 (844)
++|+|+.+|||||+++++.-.+.
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~ 24 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFD 24 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCC
Confidence 57899999999999999865543
No 415
>PRK08233 hypothetical protein; Provisional
Probab=87.12 E-value=0.47 Score=46.74 Aligned_cols=23 Identities=13% Similarity=0.332 Sum_probs=18.7
Q ss_pred eeEEEeeccCCChhhHHHHHHHH
Q 042025 429 QKLLLLGLQGAGTSTIFKQAKFL 451 (844)
Q Consensus 429 iKLLLLGsgeSGKSTI~KQmKiL 451 (844)
.-|.+.|.+||||||+.+++.-.
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhh
Confidence 45677899999999999887543
No 416
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=87.08 E-value=0.46 Score=47.29 Aligned_cols=21 Identities=14% Similarity=0.254 Sum_probs=18.9
Q ss_pred eeEEEeeccCCChhhHHHHHH
Q 042025 429 QKLLLLGLQGAGTSTIFKQAK 449 (844)
Q Consensus 429 iKLLLLGsgeSGKSTI~KQmK 449 (844)
+|++++|..++|||||++++.
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~ 22 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYT 22 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHh
Confidence 699999999999999998653
No 417
>PRK02496 adk adenylate kinase; Provisional
Probab=86.98 E-value=0.55 Score=47.07 Aligned_cols=25 Identities=28% Similarity=0.295 Sum_probs=21.1
Q ss_pred eeEEEeeccCCChhhHHHHHHHHhc
Q 042025 429 QKLLLLGLQGAGTSTIFKQAKFLYG 453 (844)
Q Consensus 429 iKLLLLGsgeSGKSTI~KQmKiLy~ 453 (844)
.|++++|++||||||+.+.+--.|+
T Consensus 2 ~~i~i~G~pGsGKst~a~~la~~~~ 26 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVVLAEHLH 26 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5899999999999999998854443
No 418
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=86.95 E-value=0.43 Score=48.66 Aligned_cols=23 Identities=22% Similarity=0.424 Sum_probs=19.4
Q ss_pred cceeeEEEeeccCCChhhHHHHH
Q 042025 426 KKVQKLLLLGLQGAGTSTIFKQA 448 (844)
Q Consensus 426 k~~iKLLLLGsgeSGKSTI~KQm 448 (844)
+.--.+.|+|++||||||++|-+
T Consensus 19 ~~G~~~~l~G~nG~GKSTLl~~i 41 (176)
T cd03238 19 PLNVLVVVTGVSGSGKSTLVNEG 41 (176)
T ss_pred cCCCEEEEECCCCCCHHHHHHHH
Confidence 44457899999999999999865
No 419
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=86.87 E-value=0.94 Score=45.98 Aligned_cols=22 Identities=32% Similarity=0.523 Sum_probs=18.2
Q ss_pred eEEEeeccCCChhhHHHHHHHH
Q 042025 430 KLLLLGLQGAGTSTIFKQAKFL 451 (844)
Q Consensus 430 KLLLLGsgeSGKSTI~KQmKiL 451 (844)
-++|+|.+||||||+++.+--+
T Consensus 5 ~i~l~G~sGsGKSTl~~~la~~ 26 (176)
T PRK09825 5 SYILMGVSGSGKSLIGSKIAAL 26 (176)
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 3689999999999999976533
No 420
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=86.87 E-value=0.48 Score=48.83 Aligned_cols=24 Identities=42% Similarity=0.634 Sum_probs=20.2
Q ss_pred eEEEeeccCCChhhHHHHHHHHhc
Q 042025 430 KLLLLGLQGAGTSTIFKQAKFLYG 453 (844)
Q Consensus 430 KLLLLGsgeSGKSTI~KQmKiLy~ 453 (844)
||+|+|.+||||||+.+++---|+
T Consensus 1 rI~i~G~pGsGKsT~a~~La~~~g 24 (210)
T TIGR01351 1 RLVLLGPPGSGKGTQAKRIAEKYG 24 (210)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcC
Confidence 689999999999999998754443
No 421
>PRK00300 gmk guanylate kinase; Provisional
Probab=86.85 E-value=0.42 Score=48.49 Aligned_cols=24 Identities=33% Similarity=0.299 Sum_probs=20.0
Q ss_pred eeEEEeeccCCChhhHHHHHHHHh
Q 042025 429 QKLLLLGLQGAGTSTIFKQAKFLY 452 (844)
Q Consensus 429 iKLLLLGsgeSGKSTI~KQmKiLy 452 (844)
.-|+|+|++||||||+.+++--.+
T Consensus 6 ~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 6 LLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 358899999999999999885443
No 422
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=86.83 E-value=0.44 Score=48.78 Aligned_cols=20 Identities=20% Similarity=0.370 Sum_probs=18.3
Q ss_pred eEEEeeccCCChhhHHHHHH
Q 042025 430 KLLLLGLQGAGTSTIFKQAK 449 (844)
Q Consensus 430 KLLLLGsgeSGKSTI~KQmK 449 (844)
.++|.|+++|||||++|++-
T Consensus 30 ~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 30 VLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred EEEEECCCCCChHHHHHHHH
Confidence 49999999999999999965
No 423
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=86.82 E-value=4.4 Score=44.23 Aligned_cols=26 Identities=19% Similarity=0.211 Sum_probs=20.3
Q ss_pred EEEEeecCCCCHHHHHHHHHHHHhhh
Q 042025 790 VWQARARDRVTVDEAFKYIREVLKWD 815 (844)
Q Consensus 790 vh~T~AtDte~I~evF~~V~e~Ik~~ 815 (844)
+.+++|.++.+++..++.+.+.+...
T Consensus 83 vi~vSa~~~~gi~~L~~~l~~~l~~~ 108 (287)
T PRK09563 83 ALAINAKKGQGVKKILKAAKKLLKEK 108 (287)
T ss_pred EEEEECCCcccHHHHHHHHHHHHHHH
Confidence 56778888888888888888776544
No 424
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=86.78 E-value=0.52 Score=48.19 Aligned_cols=23 Identities=26% Similarity=0.424 Sum_probs=20.7
Q ss_pred ceeeEEEeeccCCChhhHHHHHH
Q 042025 427 KVQKLLLLGLQGAGTSTIFKQAK 449 (844)
Q Consensus 427 ~~iKLLLLGsgeSGKSTI~KQmK 449 (844)
..+||++||..++|||||++++.
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~ 27 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQ 27 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHH
Confidence 46899999999999999998864
No 425
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=86.76 E-value=0.44 Score=49.50 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=19.5
Q ss_pred ceeeEEEeeccCCChhhHHHHHH
Q 042025 427 KVQKLLLLGLQGAGTSTIFKQAK 449 (844)
Q Consensus 427 ~~iKLLLLGsgeSGKSTI~KQmK 449 (844)
.--.+.|+|.+||||||++|-+-
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~ 47 (236)
T cd03219 25 PGEIHGLIGPNGAGKTTLFNLIS 47 (236)
T ss_pred CCcEEEEECCCCCCHHHHHHHHc
Confidence 34568999999999999998764
No 426
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=86.72 E-value=0.47 Score=48.98 Aligned_cols=21 Identities=24% Similarity=0.468 Sum_probs=19.6
Q ss_pred eeeEEEeeccCCChhhHHHHH
Q 042025 428 VQKLLLLGLQGAGTSTIFKQA 448 (844)
Q Consensus 428 ~iKLLLLGsgeSGKSTI~KQm 448 (844)
.+||+++|..++|||||+.++
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l 22 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRF 22 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHH
Confidence 479999999999999999986
No 427
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=86.69 E-value=0.51 Score=48.95 Aligned_cols=26 Identities=27% Similarity=0.359 Sum_probs=22.4
Q ss_pred eeeEEEeeccCCChhhHHHHHHHHhc
Q 042025 428 VQKLLLLGLQGAGTSTIFKQAKFLYG 453 (844)
Q Consensus 428 ~iKLLLLGsgeSGKSTI~KQmKiLy~ 453 (844)
--.+++.|++||||||++||.-.|-.
T Consensus 29 Ge~iaitGPSG~GKStllk~va~Lis 54 (223)
T COG4619 29 GEFIAITGPSGCGKSTLLKIVASLIS 54 (223)
T ss_pred CceEEEeCCCCccHHHHHHHHHhccC
Confidence 34678999999999999999987765
No 428
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=86.63 E-value=0.64 Score=51.82 Aligned_cols=39 Identities=18% Similarity=0.338 Sum_probs=29.6
Q ss_pred chhhhhhcceeeEEEeeccCCChhhHHHHHHHHhcCCCC
Q 042025 419 VPNYLEQKKVQKLLLLGLQGAGTSTIFKQAKFLYGNKFT 457 (844)
Q Consensus 419 Id~~Le~k~~iKLLLLGsgeSGKSTI~KQmKiLy~~gFS 457 (844)
|+..++.--..+++|+|++||||||+++++--+|+..+-
T Consensus 153 i~~~~~~~~~~~~~~~G~~~~gkstl~~~l~~~~~~~~v 191 (325)
T TIGR01526 153 IPREVRPFFVKTVAILGGESTGKSTLVNKLAAVFNTTSA 191 (325)
T ss_pred CCHHHHhhcCcEEEEECCCCCCHHHHHHHHHHhhCCCEE
Confidence 334444422458999999999999999999988877653
No 429
>COG2262 HflX GTPases [General function prediction only]
Probab=86.61 E-value=1.9 Score=49.69 Aligned_cols=49 Identities=27% Similarity=0.547 Sum_probs=38.6
Q ss_pred CccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcEEEEecccchhhh
Q 042025 670 DVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFVLILNKYDLFEE 736 (844)
Q Consensus 670 dV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpiILfLNK~DLfee 736 (844)
++|.++.|||.|| . + ...+++.+.++++.|--. +.|+|+++||+|+...
T Consensus 271 ~aDlllhVVDaSd-------p-~------~~~~~~~v~~vL~el~~~----~~p~i~v~NKiD~~~~ 319 (411)
T COG2262 271 EADLLLHVVDASD-------P-E------ILEKLEAVEDVLAEIGAD----EIPIILVLNKIDLLED 319 (411)
T ss_pred cCCEEEEEeecCC-------h-h------HHHHHHHHHHHHHHcCCC----CCCEEEEEecccccCc
Confidence 5899999999996 2 2 367788888888887433 3899999999998753
No 430
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=86.59 E-value=0.44 Score=46.09 Aligned_cols=19 Identities=32% Similarity=0.576 Sum_probs=17.2
Q ss_pred eEEEeeccCCChhhHHHHH
Q 042025 430 KLLLLGLQGAGTSTIFKQA 448 (844)
Q Consensus 430 KLLLLGsgeSGKSTI~KQm 448 (844)
||+++|.+++|||||+..+
T Consensus 1 ki~vvG~~~~GKtsli~~~ 19 (165)
T cd04146 1 KIAVLGASGVGKSALVVRF 19 (165)
T ss_pred CEEEECCCCCcHHHHHHHH
Confidence 7999999999999999655
No 431
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=86.58 E-value=0.47 Score=48.72 Aligned_cols=24 Identities=25% Similarity=0.414 Sum_probs=19.9
Q ss_pred cceeeEEEeeccCCChhhHHHHHH
Q 042025 426 KKVQKLLLLGLQGAGTSTIFKQAK 449 (844)
Q Consensus 426 k~~iKLLLLGsgeSGKSTI~KQmK 449 (844)
..--.+.|+|.+||||||++|-+-
T Consensus 28 ~~G~~~~l~G~nGsGKSTLl~~i~ 51 (218)
T cd03255 28 EKGEFVAIVGPSGSGKSTLLNILG 51 (218)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHh
Confidence 344578999999999999998764
No 432
>PRK13695 putative NTPase; Provisional
Probab=86.51 E-value=0.47 Score=47.31 Aligned_cols=20 Identities=25% Similarity=0.419 Sum_probs=18.0
Q ss_pred eeEEEeeccCCChhhHHHHH
Q 042025 429 QKLLLLGLQGAGTSTIFKQA 448 (844)
Q Consensus 429 iKLLLLGsgeSGKSTI~KQm 448 (844)
.|++|.|.+|+||||+++++
T Consensus 1 ~~i~ltG~~G~GKTTll~~i 20 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKI 20 (174)
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 48999999999999999963
No 433
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=86.48 E-value=0.35 Score=50.04 Aligned_cols=25 Identities=44% Similarity=0.699 Sum_probs=21.3
Q ss_pred eEEEeeccCCChhhHHHHHH-HHhcC
Q 042025 430 KLLLLGLQGAGTSTIFKQAK-FLYGN 454 (844)
Q Consensus 430 KLLLLGsgeSGKSTI~KQmK-iLy~~ 454 (844)
.+.|+|+.|||||||++-+. .||+.
T Consensus 30 ~~~i~G~NGsGKSTll~~i~~~l~g~ 55 (213)
T cd03279 30 LFLICGPTGAGKSTILDAITYALYGK 55 (213)
T ss_pred EEEEECCCCCCHHHHHHHheeeEecC
Confidence 57899999999999999998 45654
No 434
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=86.48 E-value=0.53 Score=47.73 Aligned_cols=24 Identities=13% Similarity=0.261 Sum_probs=21.1
Q ss_pred cceeeEEEeeccCCChhhHHHHHH
Q 042025 426 KKVQKLLLLGLQGAGTSTIFKQAK 449 (844)
Q Consensus 426 k~~iKLLLLGsgeSGKSTI~KQmK 449 (844)
+..+||+|+|.+++|||||+.++.
T Consensus 3 ~~~~KivvvGd~~vGKTsli~~~~ 26 (182)
T cd04172 3 NVKCKIVVVGDSQCGKTALLHVFA 26 (182)
T ss_pred cceEEEEEECCCCCCHHHHHHHHH
Confidence 457899999999999999999753
No 435
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=86.37 E-value=0.49 Score=48.37 Aligned_cols=27 Identities=30% Similarity=0.298 Sum_probs=21.3
Q ss_pred cceeeEEEeeccCCChhhHHHHHHHHh
Q 042025 426 KKVQKLLLLGLQGAGTSTIFKQAKFLY 452 (844)
Q Consensus 426 k~~iKLLLLGsgeSGKSTI~KQmKiLy 452 (844)
+.--.+.|+|.+||||||++|-+-=++
T Consensus 25 ~~G~~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 25 SAGEFVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 344578999999999999998775443
No 436
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=86.26 E-value=0.57 Score=40.28 Aligned_cols=22 Identities=27% Similarity=0.350 Sum_probs=19.1
Q ss_pred EEEeeccCCChhhHHHHHHHHh
Q 042025 431 LLLLGLQGAGTSTIFKQAKFLY 452 (844)
Q Consensus 431 LLLLGsgeSGKSTI~KQmKiLy 452 (844)
+.+.|..+|||||+.+++.-.+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6788999999999999887663
No 437
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=86.26 E-value=0.49 Score=48.40 Aligned_cols=26 Identities=35% Similarity=0.393 Sum_probs=20.5
Q ss_pred cceeeEEEeeccCCChhhHHHHHHHH
Q 042025 426 KKVQKLLLLGLQGAGTSTIFKQAKFL 451 (844)
Q Consensus 426 k~~iKLLLLGsgeSGKSTI~KQmKiL 451 (844)
+.--.+.|+|.+||||||++|-+-=+
T Consensus 26 ~~G~~~~l~G~nGsGKSTLl~~i~Gl 51 (214)
T TIGR02673 26 RKGEFLFLTGPSGAGKTTLLKLLYGA 51 (214)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34457899999999999999866433
No 438
>PF05729 NACHT: NACHT domain
Probab=86.26 E-value=0.49 Score=45.19 Aligned_cols=18 Identities=33% Similarity=0.639 Sum_probs=15.7
Q ss_pred EEEeeccCCChhhHHHHH
Q 042025 431 LLLLGLQGAGTSTIFKQA 448 (844)
Q Consensus 431 LLLLGsgeSGKSTI~KQm 448 (844)
|+|.|.+|+||||+++.+
T Consensus 3 l~I~G~~G~GKStll~~~ 20 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKL 20 (166)
T ss_pred EEEECCCCCChHHHHHHH
Confidence 678999999999998743
No 439
>PRK14531 adenylate kinase; Provisional
Probab=86.25 E-value=0.61 Score=47.13 Aligned_cols=25 Identities=40% Similarity=0.480 Sum_probs=20.8
Q ss_pred eeEEEeeccCCChhhHHHHHHHHhc
Q 042025 429 QKLLLLGLQGAGTSTIFKQAKFLYG 453 (844)
Q Consensus 429 iKLLLLGsgeSGKSTI~KQmKiLy~ 453 (844)
.+|+++|.+||||||+.+++.--|+
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g 27 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHG 27 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999988754443
No 440
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=86.21 E-value=0.57 Score=48.98 Aligned_cols=22 Identities=23% Similarity=0.433 Sum_probs=20.2
Q ss_pred eeEEEeeccCCChhhHHHHHHH
Q 042025 429 QKLLLLGLQGAGTSTIFKQAKF 450 (844)
Q Consensus 429 iKLLLLGsgeSGKSTI~KQmKi 450 (844)
-+++|.|+.+|||||++|++-+
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 6789999999999999999874
No 441
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=86.14 E-value=0.5 Score=48.18 Aligned_cols=25 Identities=32% Similarity=0.323 Sum_probs=20.3
Q ss_pred ceeeEEEeeccCCChhhHHHHHHHH
Q 042025 427 KVQKLLLLGLQGAGTSTIFKQAKFL 451 (844)
Q Consensus 427 ~~iKLLLLGsgeSGKSTI~KQmKiL 451 (844)
.--.+.|+|++||||||++|-+-=+
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (205)
T cd03226 25 AGEIIALTGKNGAGKTTLAKILAGL 49 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3457899999999999999876433
No 442
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=86.14 E-value=0.47 Score=50.71 Aligned_cols=28 Identities=25% Similarity=0.405 Sum_probs=22.6
Q ss_pred cceeeEEEeeccCCChhhHHHHHHHHhc
Q 042025 426 KKVQKLLLLGLQGAGTSTIFKQAKFLYG 453 (844)
Q Consensus 426 k~~iKLLLLGsgeSGKSTI~KQmKiLy~ 453 (844)
++--.+.++|++||||||+++-+-.|-.
T Consensus 26 ~~Gevv~iiGpSGSGKSTlLRclN~LE~ 53 (240)
T COG1126 26 EKGEVVVIIGPSGSGKSTLLRCLNGLEE 53 (240)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCcC
Confidence 3344688999999999999998876653
No 443
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=86.13 E-value=0.56 Score=47.58 Aligned_cols=21 Identities=24% Similarity=0.477 Sum_probs=18.7
Q ss_pred EEEeeccCCChhhHHHHHHHH
Q 042025 431 LLLLGLQGAGTSTIFKQAKFL 451 (844)
Q Consensus 431 LLLLGsgeSGKSTI~KQmKiL 451 (844)
++|.|+++|||||++|++-++
T Consensus 2 ~~ltG~N~~GKst~l~~i~~~ 22 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVGLI 22 (185)
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 689999999999999999743
No 444
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=86.12 E-value=0.51 Score=48.18 Aligned_cols=23 Identities=26% Similarity=0.549 Sum_probs=19.5
Q ss_pred ceeeEEEeeccCCChhhHHHHHH
Q 042025 427 KVQKLLLLGLQGAGTSTIFKQAK 449 (844)
Q Consensus 427 ~~iKLLLLGsgeSGKSTI~KQmK 449 (844)
.--.+.|+|.+||||||++|-+=
T Consensus 25 ~G~~~~l~G~nGsGKSTLl~~l~ 47 (213)
T cd03262 25 KGEVVVIIGPSGSGKSTLLRCIN 47 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 44578999999999999998764
No 445
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=85.96 E-value=0.52 Score=44.88 Aligned_cols=22 Identities=18% Similarity=0.267 Sum_probs=18.9
Q ss_pred ceeeEEEeeccCCChhhHHHHH
Q 042025 427 KVQKLLLLGLQGAGTSTIFKQA 448 (844)
Q Consensus 427 ~~iKLLLLGsgeSGKSTI~KQm 448 (844)
..-.++|+|++||||||+++.+
T Consensus 14 ~ge~v~I~GpSGsGKSTLl~~l 35 (107)
T cd00820 14 GKVGVLITGDSGIGKTELALEL 35 (107)
T ss_pred CCEEEEEEcCCCCCHHHHHHHh
Confidence 3456899999999999999985
No 446
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=85.96 E-value=4.7 Score=45.49 Aligned_cols=113 Identities=15% Similarity=0.078 Sum_probs=64.6
Q ss_pred CceEEEEEeCCCCCCCcccceeccCCccEEEEEee-cccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCc
Q 042025 645 LTKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVA-LSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTP 723 (844)
Q Consensus 645 ~~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVd-LSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tp 723 (844)
+..+.|+|..|-+.++ ....+.+|.+||+++ -+. .-++..+ ..++. ..
T Consensus 148 g~d~viieT~Gv~qs~----~~i~~~aD~vlvv~~p~~g------------------d~iq~~k---~gi~E------~a 196 (332)
T PRK09435 148 GYDVILVETVGVGQSE----TAVAGMVDFFLLLQLPGAG------------------DELQGIK---KGIME------LA 196 (332)
T ss_pred CCCEEEEECCCCccch----hHHHHhCCEEEEEecCCch------------------HHHHHHH---hhhhh------hh
Confidence 3678999999884222 235667899999864 221 1111111 11222 12
Q ss_pred EEEEecccchhhhhhhccccccccccCCCCCCcCCCCChhhHHHHHHHHHHHHHhhhccCCCCcEEEEEEeecCCCCHHH
Q 042025 724 FVLILNKYDLFEEKVNRVHLSTCEWFNDFSPVRTHHNNQSLAHQAYYYVAMKFKDLYASLTGRKLFVWQARARDRVTVDE 803 (844)
Q Consensus 724 iILfLNK~DLfeeKI~~spLs~c~~FPDF~g~~~~~n~~sl~e~A~~YI~~KFl~L~~s~~~Rklyvh~T~AtDte~I~e 803 (844)
-|+++||.|+.... . ++.....+...+.-+.....+-.--+.++||+++.+|++
T Consensus 197 DIiVVNKaDl~~~~----~----------------------a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIde 250 (332)
T PRK09435 197 DLIVINKADGDNKT----A----------------------ARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDE 250 (332)
T ss_pred heEEeehhcccchh----H----------------------HHHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHH
Confidence 37899999987531 0 223333344433221100001112478999999999999
Q ss_pred HHHHHHHHHhh
Q 042025 804 AFKYIREVLKW 814 (844)
Q Consensus 804 vF~~V~e~Ik~ 814 (844)
.+++|.+.+.+
T Consensus 251 L~~~I~~~~~~ 261 (332)
T PRK09435 251 IWQAIEDHRAA 261 (332)
T ss_pred HHHHHHHHHHH
Confidence 99999987653
No 447
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=85.90 E-value=0.53 Score=48.36 Aligned_cols=26 Identities=35% Similarity=0.408 Sum_probs=20.8
Q ss_pred ceeeEEEeeccCCChhhHHHHHHHHh
Q 042025 427 KVQKLLLLGLQGAGTSTIFKQAKFLY 452 (844)
Q Consensus 427 ~~iKLLLLGsgeSGKSTI~KQmKiLy 452 (844)
.--.+.|+|.+||||||++|-+-=++
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 28 KGEMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34578999999999999998765443
No 448
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=85.84 E-value=0.66 Score=47.09 Aligned_cols=22 Identities=18% Similarity=0.246 Sum_probs=19.3
Q ss_pred EEEeeccCCChhhHHHHHHHHh
Q 042025 431 LLLLGLQGAGTSTIFKQAKFLY 452 (844)
Q Consensus 431 LLLLGsgeSGKSTI~KQmKiLy 452 (844)
|.|.|.+||||||+.+.+.-+.
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999999987655
No 449
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=85.83 E-value=0.61 Score=47.98 Aligned_cols=25 Identities=16% Similarity=0.094 Sum_probs=20.3
Q ss_pred eeeEEEeeccCCChhhHHHHHHHHh
Q 042025 428 VQKLLLLGLQGAGTSTIFKQAKFLY 452 (844)
Q Consensus 428 ~iKLLLLGsgeSGKSTI~KQmKiLy 452 (844)
..-|.+.|.+||||||++|++.-+.
T Consensus 6 g~vi~I~G~sGsGKSTl~~~l~~~l 30 (207)
T TIGR00235 6 GIIIGIGGGSGSGKTTVARKIYEQL 30 (207)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3457799999999999999886443
No 450
>PF13173 AAA_14: AAA domain
Probab=85.65 E-value=0.56 Score=44.61 Aligned_cols=19 Identities=37% Similarity=0.712 Sum_probs=17.2
Q ss_pred EEEeeccCCChhhHHHHHH
Q 042025 431 LLLLGLQGAGTSTIFKQAK 449 (844)
Q Consensus 431 LLLLGsgeSGKSTI~KQmK 449 (844)
++|.|+-++||||++||+-
T Consensus 5 ~~l~G~R~vGKTtll~~~~ 23 (128)
T PF13173_consen 5 IILTGPRGVGKTTLLKQLA 23 (128)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6788999999999999975
No 451
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=85.64 E-value=0.55 Score=48.09 Aligned_cols=23 Identities=30% Similarity=0.469 Sum_probs=19.1
Q ss_pred ceeeEEEeeccCCChhhHHHHHH
Q 042025 427 KVQKLLLLGLQGAGTSTIFKQAK 449 (844)
Q Consensus 427 ~~iKLLLLGsgeSGKSTI~KQmK 449 (844)
.--.+.|+|.+||||||++|-+-
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~ 47 (213)
T cd03259 25 PGEFLALLGPSGCGKTTLLRLIA 47 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHh
Confidence 34468999999999999998664
No 452
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=85.52 E-value=0.53 Score=48.13 Aligned_cols=23 Identities=35% Similarity=0.442 Sum_probs=19.7
Q ss_pred eEEEeeccCCChhhHHHHHHHHh
Q 042025 430 KLLLLGLQGAGTSTIFKQAKFLY 452 (844)
Q Consensus 430 KLLLLGsgeSGKSTI~KQmKiLy 452 (844)
.+.|+|.+||||||++|-+-=++
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLT 49 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCC
Confidence 89999999999999998775433
No 453
>PLN03118 Rab family protein; Provisional
Probab=85.50 E-value=0.61 Score=47.69 Aligned_cols=22 Identities=32% Similarity=0.486 Sum_probs=20.2
Q ss_pred ceeeEEEeeccCCChhhHHHHH
Q 042025 427 KVQKLLLLGLQGAGTSTIFKQA 448 (844)
Q Consensus 427 ~~iKLLLLGsgeSGKSTI~KQm 448 (844)
..+||+++|..++|||||++++
T Consensus 13 ~~~kv~ivG~~~vGKTsli~~l 34 (211)
T PLN03118 13 LSFKILLIGDSGVGKSSLLVSF 34 (211)
T ss_pred cceEEEEECcCCCCHHHHHHHH
Confidence 4589999999999999999986
No 454
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=85.49 E-value=0.56 Score=47.25 Aligned_cols=21 Identities=24% Similarity=0.297 Sum_probs=18.9
Q ss_pred eeEEEeeccCCChhhHHHHHH
Q 042025 429 QKLLLLGLQGAGTSTIFKQAK 449 (844)
Q Consensus 429 iKLLLLGsgeSGKSTI~KQmK 449 (844)
+|+++||..++|||||++++.
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~ 21 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYV 21 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 599999999999999998763
No 455
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=85.49 E-value=0.52 Score=51.27 Aligned_cols=20 Identities=35% Similarity=0.401 Sum_probs=17.0
Q ss_pred EEEeeccCCChhhHHHHHHH
Q 042025 431 LLLLGLQGAGTSTIFKQAKF 450 (844)
Q Consensus 431 LLLLGsgeSGKSTI~KQmKi 450 (844)
+-|||++||||||++|-+-=
T Consensus 31 ~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 31 TGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 46899999999999997643
No 456
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=85.47 E-value=0.6 Score=53.57 Aligned_cols=39 Identities=18% Similarity=0.324 Sum_probs=34.1
Q ss_pred CchhhhhhcceeeEEEeeccCCChhhHHHHHHHHhcCCC
Q 042025 418 TVPNYLEQKKVQKLLLLGLQGAGTSTIFKQAKFLYGNKF 456 (844)
Q Consensus 418 ~Id~~Le~k~~iKLLLLGsgeSGKSTI~KQmKiLy~~gF 456 (844)
-||...+.....+|+++|+.+|||||+++++--.|+..+
T Consensus 209 ~i~~~vr~~~~~~IvI~G~~gsGKTTL~~~La~~~g~~~ 247 (399)
T PRK08099 209 YIPTEVRPFFVRTVAILGGESSGKSTLVNKLANIFNTTS 247 (399)
T ss_pred hcCHHHhhCCCcEEEEEcCCCCCHHHHHHHHHHHhCCCe
Confidence 677778888889999999999999999999988877653
No 457
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=85.40 E-value=0.61 Score=54.82 Aligned_cols=46 Identities=20% Similarity=0.309 Sum_probs=30.2
Q ss_pred ceeeEEEeeccCCChhhHHHHHHHHhcC------------CCCHHHHHHHHHHHHHHHH
Q 042025 427 KVQKLLLLGLQGAGTSTIFKQAKFLYGN------------KFTAEELQDIKLMIQSNMY 473 (844)
Q Consensus 427 ~~iKLLLLGsgeSGKSTI~KQmKiLy~~------------gFS~eEr~~~r~iIqsNi~ 473 (844)
.---+.|+|++||||||+++........ ..++.++..+| +|+++--
T Consensus 31 ~GEiv~L~G~SGsGKSTLLr~~l~~~~sGg~I~ldg~~~~~~~~~ai~~LR-~VFQ~fn 88 (504)
T TIGR03238 31 SSSLLFLCGSSGDGKSEILAENKRKFSEGYEFFLDATHSFSPNKNAMETLD-EIFDGFN 88 (504)
T ss_pred CCCEEEEECCCCCCHHHHHhcCCCCCCCCCEEEECCEECCCCCHHHHHHHH-HHHHhhh
Confidence 3456889999999999999932221111 13467777888 6655533
No 458
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=85.34 E-value=0.58 Score=47.81 Aligned_cols=25 Identities=32% Similarity=0.356 Sum_probs=20.3
Q ss_pred ceeeEEEeeccCCChhhHHHHHHHH
Q 042025 427 KVQKLLLLGLQGAGTSTIFKQAKFL 451 (844)
Q Consensus 427 ~~iKLLLLGsgeSGKSTI~KQmKiL 451 (844)
.--.+.|+|.+||||||++|-+-=+
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~ 49 (210)
T cd03269 25 KGEIFGLLGPNGAGKTTTIRMILGI 49 (210)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3446889999999999999877533
No 459
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=85.33 E-value=0.58 Score=48.51 Aligned_cols=23 Identities=35% Similarity=0.417 Sum_probs=19.4
Q ss_pred ceeeEEEeeccCCChhhHHHHHH
Q 042025 427 KVQKLLLLGLQGAGTSTIFKQAK 449 (844)
Q Consensus 427 ~~iKLLLLGsgeSGKSTI~KQmK 449 (844)
.--.+.|+|.+||||||++|-+-
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~ 47 (232)
T cd03218 25 QGEIVGLLGPNGAGKTTTFYMIV 47 (232)
T ss_pred CCcEEEEECCCCCCHHHHHHHHh
Confidence 34478999999999999998775
No 460
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=85.27 E-value=0.59 Score=48.22 Aligned_cols=23 Identities=35% Similarity=0.447 Sum_probs=19.4
Q ss_pred ceeeEEEeeccCCChhhHHHHHH
Q 042025 427 KVQKLLLLGLQGAGTSTIFKQAK 449 (844)
Q Consensus 427 ~~iKLLLLGsgeSGKSTI~KQmK 449 (844)
.--.+.|+|.+||||||++|-+-
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~i~ 47 (220)
T cd03265 25 RGEIFGLLGPNGAGKTTTIKMLT 47 (220)
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 34578899999999999998764
No 461
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=85.25 E-value=0.58 Score=44.21 Aligned_cols=18 Identities=33% Similarity=0.615 Sum_probs=16.7
Q ss_pred EEEeeccCCChhhHHHHH
Q 042025 431 LLLLGLQGAGTSTIFKQA 448 (844)
Q Consensus 431 LLLLGsgeSGKSTI~KQm 448 (844)
++|.|.+|+||||+++++
T Consensus 2 ~~i~G~~G~GKT~l~~~i 19 (165)
T cd01120 2 ILVFGPTGSGKTTLALQL 19 (165)
T ss_pred eeEeCCCCCCHHHHHHHH
Confidence 689999999999999887
No 462
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=85.23 E-value=0.57 Score=47.93 Aligned_cols=23 Identities=26% Similarity=0.456 Sum_probs=19.0
Q ss_pred ceeeEEEeeccCCChhhHHHHHH
Q 042025 427 KVQKLLLLGLQGAGTSTIFKQAK 449 (844)
Q Consensus 427 ~~iKLLLLGsgeSGKSTI~KQmK 449 (844)
.--.+.|+|.+||||||++|-+-
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~ 47 (213)
T cd03301 25 DGEFVVLLGPSGCGKTTTLRMIA 47 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHh
Confidence 33468999999999999998664
No 463
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=85.20 E-value=0.55 Score=50.97 Aligned_cols=20 Identities=40% Similarity=0.605 Sum_probs=17.5
Q ss_pred eeEEEeeccCCChhhHHHHH
Q 042025 429 QKLLLLGLQGAGTSTIFKQA 448 (844)
Q Consensus 429 iKLLLLGsgeSGKSTI~KQm 448 (844)
--+.|+|++||||||++|-+
T Consensus 31 ~~~~iiGPNGaGKSTLlK~i 50 (254)
T COG1121 31 EITALIGPNGAGKSTLLKAI 50 (254)
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 35789999999999999975
No 464
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=85.19 E-value=0.59 Score=46.93 Aligned_cols=20 Identities=35% Similarity=0.486 Sum_probs=18.1
Q ss_pred eEEEeeccCCChhhHHHHHH
Q 042025 430 KLLLLGLQGAGTSTIFKQAK 449 (844)
Q Consensus 430 KLLLLGsgeSGKSTI~KQmK 449 (844)
||+++|..++|||||++++.
T Consensus 1 ki~ivG~~~vGKTsli~~l~ 20 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLC 20 (190)
T ss_pred CEEEECCCCCCHHHHHHHHH
Confidence 79999999999999998764
No 465
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=85.19 E-value=0.6 Score=47.95 Aligned_cols=26 Identities=35% Similarity=0.342 Sum_probs=20.6
Q ss_pred cceeeEEEeeccCCChhhHHHHHHHH
Q 042025 426 KKVQKLLLLGLQGAGTSTIFKQAKFL 451 (844)
Q Consensus 426 k~~iKLLLLGsgeSGKSTI~KQmKiL 451 (844)
..--.+.|+|.+||||||++|-+-=+
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (218)
T cd03266 29 KPGEVTGLLGPNGAGKTTTLRMLAGL 54 (218)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 34456899999999999999876433
No 466
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=85.18 E-value=0.27 Score=48.37 Aligned_cols=22 Identities=32% Similarity=0.759 Sum_probs=0.0
Q ss_pred EEeeccCCChhhHHHHHHHHhc
Q 042025 432 LLLGLQGAGTSTIFKQAKFLYG 453 (844)
Q Consensus 432 LLLGsgeSGKSTI~KQmKiLy~ 453 (844)
+|+|..+||||||++.+.++..
T Consensus 3 viiG~N~sGKS~il~ai~~~~~ 24 (303)
T PF13304_consen 3 VIIGPNGSGKSNILEAIYFLFS 24 (303)
T ss_dssp ----------------------
T ss_pred cccccccccccccccccccccc
Confidence 6899999999999999998864
No 467
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=85.17 E-value=0.59 Score=48.47 Aligned_cols=26 Identities=23% Similarity=0.354 Sum_probs=21.1
Q ss_pred cceeeEEEeeccCCChhhHHHHHHHH
Q 042025 426 KKVQKLLLLGLQGAGTSTIFKQAKFL 451 (844)
Q Consensus 426 k~~iKLLLLGsgeSGKSTI~KQmKiL 451 (844)
+.--.+.|+|.+||||||++|-+-=+
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLlk~l~G~ 56 (226)
T cd03234 31 ESGQVMAILGSSGSGKTTLLDAISGR 56 (226)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhCc
Confidence 34456899999999999999988643
No 468
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=85.16 E-value=0.57 Score=48.62 Aligned_cols=24 Identities=21% Similarity=0.272 Sum_probs=19.5
Q ss_pred eeeEEEeeccCCChhhHHHHHHHH
Q 042025 428 VQKLLLLGLQGAGTSTIFKQAKFL 451 (844)
Q Consensus 428 ~iKLLLLGsgeSGKSTI~KQmKiL 451 (844)
--.+.|+|.+||||||++|-+-=+
T Consensus 13 Ge~~~l~G~NGsGKSTLlk~i~Gl 36 (213)
T PRK15177 13 HEHIGILAAPGSGKTTLTRLLCGL 36 (213)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 346789999999999999876533
No 469
>PLN03110 Rab GTPase; Provisional
Probab=85.13 E-value=0.67 Score=47.99 Aligned_cols=22 Identities=32% Similarity=0.545 Sum_probs=19.9
Q ss_pred ceeeEEEeeccCCChhhHHHHH
Q 042025 427 KVQKLLLLGLQGAGTSTIFKQA 448 (844)
Q Consensus 427 ~~iKLLLLGsgeSGKSTI~KQm 448 (844)
..+||+++|..++|||||+.++
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l 32 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRF 32 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHH
Confidence 4689999999999999998875
No 470
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=85.11 E-value=0.62 Score=46.79 Aligned_cols=27 Identities=33% Similarity=0.395 Sum_probs=21.5
Q ss_pred cceeeEEEeeccCCChhhHHHHHHHHh
Q 042025 426 KKVQKLLLLGLQGAGTSTIFKQAKFLY 452 (844)
Q Consensus 426 k~~iKLLLLGsgeSGKSTI~KQmKiLy 452 (844)
+.--.++|+|.+||||||++|-+-=++
T Consensus 23 ~~G~~~~l~G~nGsGKStLl~~i~G~~ 49 (180)
T cd03214 23 EAGEIVGILGPNGAGKSTLLKTLAGLL 49 (180)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345578999999999999998765443
No 471
>PRK00279 adk adenylate kinase; Reviewed
Probab=85.08 E-value=0.71 Score=47.74 Aligned_cols=25 Identities=44% Similarity=0.571 Sum_probs=20.5
Q ss_pred eeEEEeeccCCChhhHHHHHHHHhc
Q 042025 429 QKLLLLGLQGAGTSTIFKQAKFLYG 453 (844)
Q Consensus 429 iKLLLLGsgeSGKSTI~KQmKiLy~ 453 (844)
.||+++|.+||||||+.+++---|+
T Consensus 1 ~~I~v~G~pGsGKsT~a~~la~~~~ 25 (215)
T PRK00279 1 MRLILLGPPGAGKGTQAKFIAEKYG 25 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3799999999999999998754443
No 472
>PLN02200 adenylate kinase family protein
Probab=85.08 E-value=0.75 Score=48.93 Aligned_cols=30 Identities=20% Similarity=0.233 Sum_probs=23.9
Q ss_pred hhhcceeeEEEeeccCCChhhHHHHHHHHh
Q 042025 423 LEQKKVQKLLLLGLQGAGTSTIFKQAKFLY 452 (844)
Q Consensus 423 Le~k~~iKLLLLGsgeSGKSTI~KQmKiLy 452 (844)
+..+....|+|+|.+||||||+.+.+.-.|
T Consensus 38 ~~~~~~~ii~I~G~PGSGKsT~a~~La~~~ 67 (234)
T PLN02200 38 SKEKTPFITFVLGGPGSGKGTQCEKIVETF 67 (234)
T ss_pred ccCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 345666789999999999999998875444
No 473
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=85.06 E-value=0.6 Score=48.39 Aligned_cols=24 Identities=29% Similarity=0.421 Sum_probs=20.2
Q ss_pred cceeeEEEeeccCCChhhHHHHHH
Q 042025 426 KKVQKLLLLGLQGAGTSTIFKQAK 449 (844)
Q Consensus 426 k~~iKLLLLGsgeSGKSTI~KQmK 449 (844)
+.--.+.|+|.+||||||++|-+-
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~ 47 (230)
T TIGR03410 24 PKGEVTCVLGRNGVGKTTLLKTLM 47 (230)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHh
Confidence 445679999999999999998654
No 474
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=85.04 E-value=0.62 Score=47.95 Aligned_cols=24 Identities=25% Similarity=0.403 Sum_probs=19.8
Q ss_pred cceeeEEEeeccCCChhhHHHHHH
Q 042025 426 KKVQKLLLLGLQGAGTSTIFKQAK 449 (844)
Q Consensus 426 k~~iKLLLLGsgeSGKSTI~KQmK 449 (844)
+.--.+.|+|.+||||||++|-+-
T Consensus 29 ~~G~~~~i~G~nGsGKSTLl~~i~ 52 (221)
T TIGR02211 29 GKGEIVAIVGSSGSGKSTLLHLLG 52 (221)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHh
Confidence 344578999999999999998764
No 475
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=85.03 E-value=0.6 Score=48.71 Aligned_cols=26 Identities=27% Similarity=0.415 Sum_probs=20.5
Q ss_pred cceeeEEEeeccCCChhhHHHHHHHH
Q 042025 426 KKVQKLLLLGLQGAGTSTIFKQAKFL 451 (844)
Q Consensus 426 k~~iKLLLLGsgeSGKSTI~KQmKiL 451 (844)
..--.+.|+|.+||||||++|-+-=+
T Consensus 26 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl 51 (243)
T TIGR02315 26 NPGEFVAIIGPSGAGKSTLLRCINRL 51 (243)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34457899999999999999866433
No 476
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=84.99 E-value=0.61 Score=47.77 Aligned_cols=23 Identities=35% Similarity=0.468 Sum_probs=19.3
Q ss_pred ceeeEEEeeccCCChhhHHHHHH
Q 042025 427 KVQKLLLLGLQGAGTSTIFKQAK 449 (844)
Q Consensus 427 ~~iKLLLLGsgeSGKSTI~KQmK 449 (844)
.--.+.|+|.+||||||++|-+-
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~ 46 (213)
T cd03235 24 PGEFLAIVGPNGAGKSTLLKAIL 46 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHc
Confidence 34468999999999999998764
No 477
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=84.98 E-value=0.62 Score=47.29 Aligned_cols=26 Identities=27% Similarity=0.419 Sum_probs=20.7
Q ss_pred ceeeEEEeeccCCChhhHHHHHHHHh
Q 042025 427 KVQKLLLLGLQGAGTSTIFKQAKFLY 452 (844)
Q Consensus 427 ~~iKLLLLGsgeSGKSTI~KQmKiLy 452 (844)
.--.+.|+|.+||||||++|-+-=++
T Consensus 23 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 23 KGKMYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 33468999999999999998775443
No 478
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=84.97 E-value=0.63 Score=46.57 Aligned_cols=24 Identities=33% Similarity=0.408 Sum_probs=19.9
Q ss_pred eeeEEEeeccCCChhhHHHHHHHH
Q 042025 428 VQKLLLLGLQGAGTSTIFKQAKFL 451 (844)
Q Consensus 428 ~iKLLLLGsgeSGKSTI~KQmKiL 451 (844)
--.+.|+|.+||||||++|-+-=+
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~ 51 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGD 51 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 346899999999999999977544
No 479
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=84.97 E-value=0.61 Score=48.58 Aligned_cols=24 Identities=33% Similarity=0.436 Sum_probs=19.9
Q ss_pred cceeeEEEeeccCCChhhHHHHHH
Q 042025 426 KKVQKLLLLGLQGAGTSTIFKQAK 449 (844)
Q Consensus 426 k~~iKLLLLGsgeSGKSTI~KQmK 449 (844)
+.--.+.|+|.+||||||++|-+-
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~ 47 (243)
T TIGR01978 24 KKGEIHAIMGPNGSGKSTLSKTIA 47 (243)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
Confidence 344578999999999999998764
No 480
>PRK05480 uridine/cytidine kinase; Provisional
Probab=84.87 E-value=0.7 Score=47.37 Aligned_cols=26 Identities=19% Similarity=0.124 Sum_probs=21.5
Q ss_pred ceeeEEEeeccCCChhhHHHHHHHHh
Q 042025 427 KVQKLLLLGLQGAGTSTIFKQAKFLY 452 (844)
Q Consensus 427 ~~iKLLLLGsgeSGKSTI~KQmKiLy 452 (844)
+...|.|.|.+||||||+.+.+.-.+
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45678999999999999998876443
No 481
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=84.87 E-value=0.63 Score=48.01 Aligned_cols=26 Identities=31% Similarity=0.411 Sum_probs=21.1
Q ss_pred ceeeEEEeeccCCChhhHHHHHHHHh
Q 042025 427 KVQKLLLLGLQGAGTSTIFKQAKFLY 452 (844)
Q Consensus 427 ~~iKLLLLGsgeSGKSTI~KQmKiLy 452 (844)
.--.+.|+|.+||||||++|-+-=++
T Consensus 36 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 61 (214)
T PRK13543 36 AGEALLVQGDNGAGKTTLLRVLAGLL 61 (214)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 34468999999999999998875444
No 482
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=84.81 E-value=0.67 Score=47.29 Aligned_cols=66 Identities=12% Similarity=0.131 Sum_probs=35.9
Q ss_pred ceEEEEEeCCCCCCCcc--cc-ee-ccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCC
Q 042025 646 TKYQLIRVNAKGMNEGC--KW-VE-MFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKD 721 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~--KW-~~-~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~ 721 (844)
..+.+||+-|.+..... .. .. .|.+++.+|++.+- .+.+ .-..+++.+... +
T Consensus 52 ~~l~l~DtpG~~~~~~~~~~~l~~~~~~~~d~~l~v~~~-~~~~-------------------~d~~~~~~l~~~----~ 107 (197)
T cd04104 52 PNVTLWDLPGIGSTAFPPDDYLEEMKFSEYDFFIIISST-RFSS-------------------NDVKLAKAIQCM----G 107 (197)
T ss_pred CCceEEeCCCCCcccCCHHHHHHHhCccCcCEEEEEeCC-CCCH-------------------HHHHHHHHHHHh----C
Confidence 36889999887321111 11 11 15678888887432 1110 011222322221 5
Q ss_pred CcEEEEecccchhh
Q 042025 722 TPFVLILNKYDLFE 735 (844)
Q Consensus 722 tpiILfLNK~DLfe 735 (844)
.|+++++||+|+..
T Consensus 108 ~~~ilV~nK~D~~~ 121 (197)
T cd04104 108 KKFYFVRTKVDRDL 121 (197)
T ss_pred CCEEEEEecccchh
Confidence 79999999999954
No 483
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=84.79 E-value=0.68 Score=46.56 Aligned_cols=21 Identities=14% Similarity=0.327 Sum_probs=19.2
Q ss_pred eeEEEeeccCCChhhHHHHHH
Q 042025 429 QKLLLLGLQGAGTSTIFKQAK 449 (844)
Q Consensus 429 iKLLLLGsgeSGKSTI~KQmK 449 (844)
+||+|+|.+++|||+|+.++.
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~ 22 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFA 22 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 699999999999999998863
No 484
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=84.77 E-value=0.61 Score=48.48 Aligned_cols=27 Identities=30% Similarity=0.338 Sum_probs=21.3
Q ss_pred cceeeEEEeeccCCChhhHHHHHHHHh
Q 042025 426 KKVQKLLLLGLQGAGTSTIFKQAKFLY 452 (844)
Q Consensus 426 k~~iKLLLLGsgeSGKSTI~KQmKiLy 452 (844)
..--.+.|+|.+||||||++|-+-=++
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 55 (233)
T cd03258 29 PKGEIFGIIGRSGAGKSTLIRCINGLE 55 (233)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 344578999999999999999765443
No 485
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=84.76 E-value=0.62 Score=46.97 Aligned_cols=23 Identities=43% Similarity=0.574 Sum_probs=18.9
Q ss_pred eeEEEeeccCCChhhHHHHHHHH
Q 042025 429 QKLLLLGLQGAGTSTIFKQAKFL 451 (844)
Q Consensus 429 iKLLLLGsgeSGKSTI~KQmKiL 451 (844)
-.+.|+|.+||||||++|-+-=+
T Consensus 19 e~~~i~G~nGsGKSTLl~~i~G~ 41 (190)
T TIGR01166 19 EVLALLGANGAGKSTLLLHLNGL 41 (190)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35889999999999999866433
No 486
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=84.74 E-value=0.61 Score=47.61 Aligned_cols=23 Identities=30% Similarity=0.556 Sum_probs=19.1
Q ss_pred ceeeEEEeeccCCChhhHHHHHH
Q 042025 427 KVQKLLLLGLQGAGTSTIFKQAK 449 (844)
Q Consensus 427 ~~iKLLLLGsgeSGKSTI~KQmK 449 (844)
.--.+.|+|.+||||||++|-+-
T Consensus 26 ~G~~~~l~G~nGsGKSTLl~~l~ 48 (211)
T cd03225 26 KGEFVLIVGPNGSGKSTLLRLLN 48 (211)
T ss_pred CCcEEEEECCCCCCHHHHHHHHh
Confidence 33468899999999999998664
No 487
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=84.74 E-value=0.64 Score=48.45 Aligned_cols=24 Identities=25% Similarity=0.407 Sum_probs=19.7
Q ss_pred ceeeEEEeeccCCChhhHHHHHHH
Q 042025 427 KVQKLLLLGLQGAGTSTIFKQAKF 450 (844)
Q Consensus 427 ~~iKLLLLGsgeSGKSTI~KQmKi 450 (844)
.--.+.|+|.+||||||++|-+-=
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G 48 (235)
T cd03261 25 RGEILAIIGPSGSGKSTLLRLIVG 48 (235)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 334689999999999999987653
No 488
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=84.62 E-value=0.62 Score=49.75 Aligned_cols=21 Identities=19% Similarity=0.415 Sum_probs=19.3
Q ss_pred eeEEEeeccCCChhhHHHHHH
Q 042025 429 QKLLLLGLQGAGTSTIFKQAK 449 (844)
Q Consensus 429 iKLLLLGsgeSGKSTI~KQmK 449 (844)
+||++||.+++|||||++++.
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~ 21 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFL 21 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHH
Confidence 589999999999999999874
No 489
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=84.54 E-value=0.63 Score=47.55 Aligned_cols=26 Identities=23% Similarity=0.248 Sum_probs=20.6
Q ss_pred cceeeEEEeeccCCChhhHHHHHHHH
Q 042025 426 KKVQKLLLLGLQGAGTSTIFKQAKFL 451 (844)
Q Consensus 426 k~~iKLLLLGsgeSGKSTI~KQmKiL 451 (844)
+.--.+.|+|++||||||++|-+-=+
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl 48 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQ 48 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcC
Confidence 34447889999999999999966533
No 490
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=84.53 E-value=0.66 Score=47.66 Aligned_cols=24 Identities=33% Similarity=0.502 Sum_probs=19.9
Q ss_pred cceeeEEEeeccCCChhhHHHHHH
Q 042025 426 KKVQKLLLLGLQGAGTSTIFKQAK 449 (844)
Q Consensus 426 k~~iKLLLLGsgeSGKSTI~KQmK 449 (844)
+.--.+.|+|.+||||||++|-+-
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~ 47 (222)
T cd03224 24 PEGEIVALLGRNGAGKTTLLKTIM 47 (222)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHh
Confidence 344578999999999999998664
No 491
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=84.50 E-value=0.64 Score=47.81 Aligned_cols=25 Identities=32% Similarity=0.288 Sum_probs=20.1
Q ss_pred eeeEEEeeccCCChhhHHHHHHHHh
Q 042025 428 VQKLLLLGLQGAGTSTIFKQAKFLY 452 (844)
Q Consensus 428 ~iKLLLLGsgeSGKSTI~KQmKiLy 452 (844)
--.+.|+|.+||||||++|-+-=++
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 28 GEIFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3468999999999999998765443
No 492
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=84.44 E-value=0.7 Score=44.54 Aligned_cols=19 Identities=21% Similarity=0.506 Sum_probs=18.0
Q ss_pred eEEEeeccCCChhhHHHHH
Q 042025 430 KLLLLGLQGAGTSTIFKQA 448 (844)
Q Consensus 430 KLLLLGsgeSGKSTI~KQm 448 (844)
+|+|+|..++|||||++++
T Consensus 2 ~i~~~G~~~~GKssli~~l 20 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKL 20 (168)
T ss_pred eEEEEcCCCCCHHHHHHHH
Confidence 7899999999999999986
No 493
>PRK06762 hypothetical protein; Provisional
Probab=84.44 E-value=0.84 Score=44.84 Aligned_cols=24 Identities=33% Similarity=0.483 Sum_probs=20.1
Q ss_pred eEEEeeccCCChhhHHHHHHHHhc
Q 042025 430 KLLLLGLQGAGTSTIFKQAKFLYG 453 (844)
Q Consensus 430 KLLLLGsgeSGKSTI~KQmKiLy~ 453 (844)
-|+|.|..||||||+.+++.-.++
T Consensus 4 li~i~G~~GsGKST~A~~L~~~l~ 27 (166)
T PRK06762 4 LIIIRGNSGSGKTTIAKQLQERLG 27 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 467889999999999999876554
No 494
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=84.40 E-value=0.65 Score=47.92 Aligned_cols=23 Identities=26% Similarity=0.437 Sum_probs=19.1
Q ss_pred ceeeEEEeeccCCChhhHHHHHH
Q 042025 427 KVQKLLLLGLQGAGTSTIFKQAK 449 (844)
Q Consensus 427 ~~iKLLLLGsgeSGKSTI~KQmK 449 (844)
.--.+.|+|.+||||||++|-+-
T Consensus 29 ~G~~~~i~G~nGsGKSTLl~~l~ 51 (220)
T cd03293 29 EGEFVALVGPSGCGKSTLLRIIA 51 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHHHh
Confidence 33468999999999999998764
No 495
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=84.38 E-value=0.67 Score=49.13 Aligned_cols=27 Identities=19% Similarity=0.253 Sum_probs=21.9
Q ss_pred cceeeEEEeeccCCChhhHHHHHHHHh
Q 042025 426 KKVQKLLLLGLQGAGTSTIFKQAKFLY 452 (844)
Q Consensus 426 k~~iKLLLLGsgeSGKSTI~KQmKiLy 452 (844)
+.--.+.|+|.+||||||++|-+-=++
T Consensus 30 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 56 (258)
T PRK11701 30 YPGEVLGIVGESGSGKTTLLNALSARL 56 (258)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 455689999999999999998765443
No 496
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=84.33 E-value=0.67 Score=46.48 Aligned_cols=23 Identities=30% Similarity=0.465 Sum_probs=19.4
Q ss_pred ceeeEEEeeccCCChhhHHHHHH
Q 042025 427 KVQKLLLLGLQGAGTSTIFKQAK 449 (844)
Q Consensus 427 ~~iKLLLLGsgeSGKSTI~KQmK 449 (844)
.--.+.|+|.+||||||++|-+-
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~ 47 (178)
T cd03229 25 AGEIVALLGPSGSGKSTLLRCIA 47 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 34568899999999999998765
No 497
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=84.30 E-value=3.7 Score=47.49 Aligned_cols=75 Identities=15% Similarity=0.150 Sum_probs=48.1
Q ss_pred ceEEEEEeCCCCCCCcccceeccCCccEEEEEeecccccccccCCCCCCCcccccchHHHHHHHHHHHHcCCCCCCCcEE
Q 042025 646 TKYQLIRVNAKGMNEGCKWVEMFEDVRVVVFCVALSDYDQMWICPESSGSGTLLQNKMIQSKELFEMMIRHPCFKDTPFV 725 (844)
Q Consensus 646 ~~~~liDVGGQ~rseR~KW~~~FedV~aIIFVVdLSDYDq~l~~~ED~g~~~~~~NRL~ESl~LFesI~n~p~f~~tpiI 725 (844)
..|.++|..|+ |..-+.-+.-+..+|+-|+|||.++ ++.. . |- ...+...|.+-|-.. +--..+|
T Consensus 85 ~~~tIiDaPGH-rdFvknmItGasqAD~aVLVV~a~~-~efE----~-g~--~~~gQtrEH~~La~t------lGi~~lI 149 (428)
T COG5256 85 YNFTIIDAPGH-RDFVKNMITGASQADVAVLVVDARD-GEFE----A-GF--GVGGQTREHAFLART------LGIKQLI 149 (428)
T ss_pred ceEEEeeCCch-HHHHHHhhcchhhccEEEEEEECCC-Cccc----c-cc--ccCCchhHHHHHHHh------cCCceEE
Confidence 47999999999 7777777777888999999999885 2111 0 00 011222333332222 2235699
Q ss_pred EEecccchhh
Q 042025 726 LILNKYDLFE 735 (844)
Q Consensus 726 LfLNK~DLfe 735 (844)
+..||+|+-.
T Consensus 150 VavNKMD~v~ 159 (428)
T COG5256 150 VAVNKMDLVS 159 (428)
T ss_pred EEEEcccccc
Confidence 9999999863
No 498
>PRK14528 adenylate kinase; Provisional
Probab=84.29 E-value=0.85 Score=46.48 Aligned_cols=25 Identities=24% Similarity=0.305 Sum_probs=20.9
Q ss_pred eeEEEeeccCCChhhHHHHHHHHhc
Q 042025 429 QKLLLLGLQGAGTSTIFKQAKFLYG 453 (844)
Q Consensus 429 iKLLLLGsgeSGKSTI~KQmKiLy~ 453 (844)
.+|+++|++||||||+.+++.--|+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~ 26 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLS 26 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3689999999999999998854443
No 499
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=84.29 E-value=0.66 Score=48.33 Aligned_cols=21 Identities=29% Similarity=0.539 Sum_probs=19.3
Q ss_pred eeEEEeeccCCChhhHHHHHH
Q 042025 429 QKLLLLGLQGAGTSTIFKQAK 449 (844)
Q Consensus 429 iKLLLLGsgeSGKSTI~KQmK 449 (844)
+||+|+|.+++|||||+.++.
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~ 21 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFT 21 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHh
Confidence 589999999999999999874
No 500
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=84.28 E-value=0.65 Score=48.33 Aligned_cols=26 Identities=31% Similarity=0.376 Sum_probs=20.8
Q ss_pred ceeeEEEeeccCCChhhHHHHHHHHh
Q 042025 427 KVQKLLLLGLQGAGTSTIFKQAKFLY 452 (844)
Q Consensus 427 ~~iKLLLLGsgeSGKSTI~KQmKiLy 452 (844)
.--.+.|+|.+||||||++|-+-=++
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 26 PGEFVALIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 34468999999999999999775443
Done!