BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042026
(335 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 65/149 (43%), Gaps = 24/149 (16%)
Query: 192 CQVCGKGFKRDANLRMHMRAHGDEYKTSAALTNPLKKNGSSMGKTMSLQSKL--WNKKHA 249
C CGK F R +L H R H E P K GK+ S + L + H
Sbjct: 24 CPECGKSFSRSDHLAEHQRTHTGE--------KPYK--CPECGKSFSDKKDLTRHQRTHT 73
Query: 250 KFQPLKSMICVKNH--------YKRSHC-PKMYVCKRCNRKQFSVLSDLRTHEK-HCGDS 299
+P K C K+ ++R+H K Y C C K FS L+ LR H++ H G+
Sbjct: 74 GEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECG-KSFSQLAHLRAHQRTHTGEK 132
Query: 300 KWQC-SCGTTFSRKDKLMGHVALFVGHTP 327
++C CG +FSR+D L H G P
Sbjct: 133 PYKCPECGKSFSREDNLHTHQRTHTGEKP 161
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 67/166 (40%), Gaps = 34/166 (20%)
Query: 162 VAENGESFSEINGDIIEVDAVDLLAKYTHYCQVCGKGFKRDANLRMHMRAHGDEYKTSAA 221
E G+SFS+ D+ K + C CGK F + ANLR H R H E +
Sbjct: 52 CPECGKSFSDKK-DLTRHQRTHTGEK-PYKCPECGKSFSQRANLRAHQRTHTGEKPYACP 109
Query: 222 LTNPLKKNGSSMGKTMSLQSKLWNKKHAKFQPLKSMICVKNHYKRSHC-PKMYVCKRCNR 280
GK+ S + L ++R+H K Y C C
Sbjct: 110 ----------ECGKSFSQLAHLRA------------------HQRTHTGEKPYKCPECG- 140
Query: 281 KQFSVLSDLRTHEK-HCGDSKWQC-SCGTTFSRKDKLMGHVALFVG 324
K FS +L TH++ H G+ ++C CG +FSR+D L H G
Sbjct: 141 KSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTG 186
>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
Length = 87
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 271 KMYVCKRCNRKQFSVLSDLRTHEK-HCGDSKWQC-SCGTTFSRKDKLMGH 318
K Y C C K FS SDL+ H++ H G+ ++C CG +FSR D L H
Sbjct: 31 KPYKCPECG-KSFSQSSDLQKHQRTHTGEKPYKCPECGKSFSRSDHLSRH 79
Score = 35.4 bits (80), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 271 KMYVCKRCNRKQFSVLSDLRTHEK-HCGDSKWQC-SCGTTFSRKDKLMGHVALFVGHTP 327
K Y C C K FS S+L+ H++ H G+ ++C CG +FS+ L H G P
Sbjct: 3 KPYKCPECG-KSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKP 60
Score = 27.7 bits (60), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 162 VAENGESFSEINGDIIEVDAVDLLAKYTHYCQVCGKGFKRDANLRMHMRAH 212
E G+SFS+ + D+ + K + C CGK F R +L H R H
Sbjct: 35 CPECGKSFSQ-SSDLQKHQRTHTGEK-PYKCPECGKSFSRSDHLSRHQRTH 83
>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound
To The Adeno-Associated Virus P5 Initiator Element
Length = 124
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Query: 267 SHCPKMYVCKRCNRKQFSVLSDLRTHE-KHCGDSKWQCS---CGTTFSRKDKLMGHVALF 322
+H P+++VC C K F S L+ H+ H G+ +QC+ CG FS L HV +
Sbjct: 29 THGPRVHVCAECG-KAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIH 87
Query: 323 VGHTPAV 329
G P V
Sbjct: 88 TGDRPYV 94
>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
Zinc-Binding Domain Of The Zinc Finger Protein 64,
Isoforms 1 And 2
Length = 96
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 8/70 (11%)
Query: 190 HYCQVCGKGFKRDANLRMHMRAHGDEYKTSAALTNPLKKNGSSMGKTMSLQSKLWNKKHA 249
H C+VCGK F R L+ HMR H + + SS+ K + + H+
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRI--------HS 60
Query: 250 KFQPLKSMIC 259
+P K IC
Sbjct: 61 DERPFKCQIC 70
Score = 27.7 bits (60), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 13/23 (56%)
Query: 305 CGTTFSRKDKLMGHVALFVGHTP 327
CG FSRKDKL H+ G P
Sbjct: 14 CGKCFSRKDKLKTHMRCHTGVKP 36
>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domain
Of Zinc Finger Protein 435
Length = 77
Score = 35.8 bits (81), Expect = 0.037, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 271 KMYVCKRCNRKQFSVLSDLRTHEK-HCGDSKWQC-SCGTTFSRKDKLMGHVALFVGHTPA 328
+ Y C C K FS SDL H + H G+ ++C CG F ++ L+GH + G P+
Sbjct: 17 RRYKCDECG-KSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPS 75
>pdb|2ELZ|A Chain A, Solution Structure Of The 17th Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 192 CQVCGKGFKRDANLRMHMRAHGDEYKTSA 220
C+ CGKG+ R NL MH R H E KTS
Sbjct: 15 CEDCGKGYNRRLNLDMHQRVHMGE-KTSG 42
>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
Length = 119
Score = 32.0 bits (71), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 53/128 (41%), Gaps = 30/128 (23%)
Query: 195 CGKGFKRDANLRMHMRAHGDEYKTSAALTNPLKKNGSSMGKTMSLQSKLWNKKHAKFQPL 254
C K + + ++L+MH R H E P + + + S +L
Sbjct: 14 CNKRYFKLSHLQMHSRKHTGE--------KPYQCDFKDCERRFSRSDQL----------- 54
Query: 255 KSMICVKNHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCGDSKWQC---SCGTTFS 310
K H +R K + CK C RK FS L+TH + H G+ + C SC F+
Sbjct: 55 ------KRHQRRHTGVKPFQCKTCQRK-FSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFA 107
Query: 311 RKDKLMGH 318
R D+L+ H
Sbjct: 108 RSDELVRH 115
Score = 31.2 bits (69), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
Query: 278 CNRKQFSVLSDLRTH-EKHCGDSKWQC---SCGTTFSRKDKLMGHVALFVGHTP 327
CN++ F LS L+ H KH G+ +QC C FSR D+L H G P
Sbjct: 14 CNKRYFK-LSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKP 66
>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
Northeast Structural Genomics Consortium
Length = 74
Score = 32.0 bits (71), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 271 KMYVCKRCNRKQFSVLSDLRTHEK-HCGDSKWQCS-CGTTFSRKDKLMGHVALFVGHTP 327
K Y C RC + F +L +H+ H G+ ++C+ CG F+R L H + G P
Sbjct: 16 KPYKCDRC-QASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 192 CQVCGKGFKRDANLRMHMRAHGDE 215
C +CG F R ANL+ H R H E
Sbjct: 48 CNICGAQFNRPANLKTHTRIHSGE 71
>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
Length = 82
Score = 32.0 bits (71), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 15/23 (65%)
Query: 190 HYCQVCGKGFKRDANLRMHMRAH 212
H CQVCGK F + +NL H R H
Sbjct: 58 HKCQVCGKAFSQSSNLITHSRKH 80
Score = 30.8 bits (68), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 192 CQVCGKGFKRDANLRMHMRAHGD 214
C++CGK FKR + L H+ H D
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSD 26
>pdb|2EOZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
809- 841) Of Human Zinc Finger Protein 473
Length = 46
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 192 CQVCGKGFKRDANLRMHMRAHGDE 215
C VCGK F A+L H+R H E
Sbjct: 15 CNVCGKAFVLSAHLNQHLRVHTQE 38
>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
Nmr, 25 Structures
Length = 60
Score = 30.8 bits (68), Expect = 1.1, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 192 CQVCGKGFKRDANLRMHMRAHGDEYKTSAALTN 224
C+VC + F R +L+ H R+H +E L N
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCN 37
>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 89
Score = 30.4 bits (67), Expect = 1.6, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Query: 281 KQFSVLSDLRTHEK-HCGDSKWQCS---CGTTFSRKDKLMGHVALFVGHTP 327
K ++ S L+ H + H G+ + C CG F+R D+L H GH P
Sbjct: 15 KTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRP 65
>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 90
Score = 30.4 bits (67), Expect = 1.6, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Query: 281 KQFSVLSDLRTHEK-HCGDSKWQCS---CGTTFSRKDKLMGHVALFVGHTP 327
K ++ S L+ H + H G+ + C CG F+R D+L H GH P
Sbjct: 16 KTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRP 66
>pdb|2EM8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
423- 455) Of Human Zinc Finger Protein 224
Length = 46
Score = 30.0 bits (66), Expect = 1.7, Method: Composition-based stats.
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 192 CQVCGKGFKRDANLRMHMRAHGDE 215
C CGKG+KR +L H R H E
Sbjct: 15 CVECGKGYKRRLDLDFHQRVHTGE 38
>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
Repeats Of Murine Gli-Kruppel Family Member Hkr3
Length = 124
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Query: 175 DIIEVDAVDLL--AKYTHYCQVCGKGFKRDANLRMHMRAHGDE--YKTSAALTNPLKKN 229
+++E +A + + ++ C VC + F+R LR+HM +H E YK S+ ++K
Sbjct: 50 NLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKK 108
>pdb|2EMZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
628- 660) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 29.6 bits (65), Expect = 2.8, Method: Composition-based stats.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 192 CQVCGKGFKRDANLRMHMRAHGDE 215
C CGKGF R ++L H+R H E
Sbjct: 15 CNECGKGFGRRSHLAGHLRLHSRE 38
>pdb|3C5Q|A Chain A, Crystal Structure Of Diaminopimelate Decarboxylase (I148l
Mutant) From Helicobacter Pylori Complexed With L-Lysine
Length = 425
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 217 KTSAALTNPLKKNGSSMGKTMSLQSKLWNKKHAKFQPL 254
KT L+ LK+N +G+ +L+ LW KK A +P+
Sbjct: 163 KTHPYLSTGLKENKFGVGEKEALEMFLWAKKSAFLEPV 200
>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
Protein Odd-Skipped-Related 2 Splicing Isoform 2
Length = 106
Score = 29.3 bits (64), Expect = 3.0, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 12/72 (16%)
Query: 192 CQVCGKGFKRDANLRMHMRAHGDEYKTSAALTNPLKKNGSSMGKTMSLQSKLWNKK--HA 249
C+ CG+ F + NL +H R H DE + + + K Q L + + H+
Sbjct: 20 CKFCGRHFTKSYNLLIHERTHTDERPYTCDICH----------KAFRRQDHLRDHRYIHS 69
Query: 250 KFQPLKSMICVK 261
K +P K C K
Sbjct: 70 KEKPFKCQECGK 81
>pdb|2YTP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
687- 719) Of Human Zinc Finger Protein 484
Length = 46
Score = 29.3 bits (64), Expect = 3.1, Method: Composition-based stats.
Identities = 14/27 (51%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 190 HY-CQVCGKGFKRDANLRMHMRAHGDE 215
HY C CGK F R + L MH R H E
Sbjct: 12 HYECSECGKAFARKSTLIMHQRIHTGE 38
>pdb|2EL5|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 42
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 297 GDSKWQCS-CGTTFSRKDKLMGHVALFVGHT 326
G++ ++CS CG F+RKD+L+ H G +
Sbjct: 7 GENPYECSECGKAFNRKDQLISHQRTHAGES 37
>pdb|2M0F|A Chain A, Solution Structure Of Miz-1 Zinc Finger 7
Length = 29
Score = 29.3 bits (64), Expect = 3.6, Method: Composition-based stats.
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 192 CQVCGKGFKRDANLRMHMRAHGDE 215
C+ CGK F NL+ H+R H E
Sbjct: 5 CRECGKQFTTSGNLKRHLRIHSGE 28
>pdb|2YSP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
507- 539) Of Human Zinc Finger Protein 224
Length = 46
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 192 CQVCGKGFKRDANLRMHMRAHGDE 215
C+ CGKG+ NL MH + H E
Sbjct: 15 CEKCGKGYNSKFNLDMHQKVHTGE 38
>pdb|2EMV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
859- 889) Of Human Zinc Finger Protein 268
Length = 44
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 192 CQVCGKGFKRDANLRMHMRAHGDEYKTSAA 221
C CGK F R++ L +H R H E S+
Sbjct: 15 CSECGKAFIRNSQLIVHQRTHSGESGPSSG 44
>pdb|2YSV|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 17 In
Zinc Finger Protein 473
Length = 42
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 190 HYCQVCGKGFKRDANLRMHMRAHGDEYKTSAA 221
+ CQ CGK F + + L +H R H E S+
Sbjct: 11 YVCQECGKAFTQSSCLSIHRRVHTGESGPSSG 42
>pdb|2EM6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
199- 231) Of Human Zinc Finger Protein 224
Length = 46
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 192 CQVCGKGFKRDANLRMHMRAHGDE 215
C VCGK F + ++L+ H R H E
Sbjct: 15 CDVCGKEFSQSSHLQTHQRVHTGE 38
>pdb|2EM5|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
768- 800) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 189 THYCQVCGKGFKRDANLRMHMRAHGDE 215
+H C CG+GF ++L H R H E
Sbjct: 12 SHQCHECGRGFTLKSHLNQHQRIHTGE 38
>pdb|2EMF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
379- 411) Of Human Zinc Finger Protein 484
Length = 46
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 192 CQVCGKGFKRDANLRMHMRAHGDE 215
C CGK F R + L MH + H E
Sbjct: 15 CTECGKAFTRKSTLSMHQKIHTGE 38
>pdb|1ARD|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 28.5 bits (62), Expect = 5.6, Method: Composition-based stats.
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 192 CQVCGKGFKRDANLRMHMRAHGDE 215
C+VC + F R +L+ H R+H +E
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNE 28
>pdb|2QGH|A Chain A, Crystal Structure Of Diaminopimelate Decarboxylase From
Helicobacter Pylori Complexed With L-Lysine
Length = 425
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 217 KTSAALTNPLKKNGSSMGKTMSLQSKLWNKKHAKFQPL 254
KT ++ LK+N +G+ +L+ LW KK A +P+
Sbjct: 163 KTHPYISTGLKENKFGVGEKEALEMFLWAKKSAFLEPV 200
>pdb|2EOJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
355- 385) Of Human Zinc Finger Protein 268
Length = 44
Score = 28.1 bits (61), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 303 CSCGTTFSRKDKLMGHVALFVGHT 326
C CG FSRKD+L+ H G +
Sbjct: 16 CECGKVFSRKDQLVSHQKTHSGQS 39
>pdb|1ARF|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 28.1 bits (61), Expect = 7.2, Method: Composition-based stats.
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 192 CQVCGKGFKRDANLRMHMRAHGDE 215
C+VC + F R L+ H R+H +E
Sbjct: 5 CEVCTRAFARQEYLKRHYRSHTNE 28
>pdb|1ARE|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 28.1 bits (61), Expect = 7.2, Method: Composition-based stats.
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 192 CQVCGKGFKRDANLRMHMRAHGDE 215
C+VC + F R L+ H R+H +E
Sbjct: 5 CEVCTRAFARQEALKRHYRSHTNE 28
>pdb|2YRJ|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(781- 813) From Zinc Finger Protein 473
Length = 46
Score = 28.1 bits (61), Expect = 7.5, Method: Composition-based stats.
Identities = 12/24 (50%), Positives = 13/24 (54%)
Query: 192 CQVCGKGFKRDANLRMHMRAHGDE 215
C CGK F + ANL H R H E
Sbjct: 15 CGECGKAFAQKANLTQHQRIHTGE 38
>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In
Zinc Finger Protein 278
Length = 95
Score = 28.1 bits (61), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Query: 262 NHYKRSHC-PKMYVCKRCN---RKQFSVLSDLRTHEKHCGDSKWQCSCGTTFSRKDKLMG 317
N +K SH K Y C C +++ + +R+H+ G SCG FSR D L G
Sbjct: 24 NRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNG 83
Query: 318 HV 319
H+
Sbjct: 84 HI 85
>pdb|2EON|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
397- 429) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 28.1 bits (61), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 192 CQVCGKGFKRDANLRMHMRAHGDE 215
CQVCGK F+ ++L H H E
Sbjct: 15 CQVCGKAFRVSSHLVQHHSVHSGE 38
>pdb|2ELR|A Chain A, Solution Structure Of The 15th C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 27.7 bits (60), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 189 THYCQVCGKGFKRDANLRMHMRAH 212
TH C +CGK FK L+ H H
Sbjct: 9 THLCDMCGKKFKSKGTLKSHKLLH 32
>pdb|2EM2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
584- 616) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 27.7 bits (60), Expect = 9.5, Method: Composition-based stats.
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 192 CQVCGKGFKRDANLRMHMRAHGDE 215
C+ CGK F+++ +L H+R H E
Sbjct: 15 CKECGKAFRQNIHLASHLRIHTGE 38
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.127 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,405,605
Number of Sequences: 62578
Number of extensions: 349290
Number of successful extensions: 1011
Number of sequences better than 100.0: 67
Number of HSP's better than 100.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 891
Number of HSP's gapped (non-prelim): 120
length of query: 335
length of database: 14,973,337
effective HSP length: 99
effective length of query: 236
effective length of database: 8,778,115
effective search space: 2071635140
effective search space used: 2071635140
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)