BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042029
(316 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BTW|B Chain B, Crystal Structure Of Alr0975
Length = 254
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 41/64 (64%)
Query: 2 QNGNGHYSPIGGYHAGRDMVLILDVARFKYPPHWMPLTLLWEAMDTIDESTGQHRGFMVI 61
Q GH SP+ Y+ D LI DV+R+KYPP W+ T LW+A +T+D + + RGF+ +
Sbjct: 189 QERGGHISPLAAYNEQTDRFLIXDVSRYKYPPVWVKTTDLWKAXNTVDSVSQKTRGFVFV 248
Query: 62 SRSH 65
S++
Sbjct: 249 SKTQ 252
>pdb|2BTW|A Chain A, Crystal Structure Of Alr0975
pdb|2BU3|A Chain A, Acyl-Enzyme Intermediate Between Alr0975 And Glutathione
At Ph 3.4
pdb|2BU3|B Chain B, Acyl-Enzyme Intermediate Between Alr0975 And Glutathione
At Ph 3.4
Length = 254
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 41/64 (64%)
Query: 2 QNGNGHYSPIGGYHAGRDMVLILDVARFKYPPHWMPLTLLWEAMDTIDESTGQHRGFMVI 61
Q GH SP+ Y+ D LI DV+R+KYPP W+ T LW+A +T+D + + RGF+ +
Sbjct: 189 QERGGHISPLAAYNEQTDRFLIXDVSRYKYPPVWVKTTDLWKAXNTVDSVSQKTRGFVFV 248
Query: 62 SRSH 65
S++
Sbjct: 249 SKTQ 252
>pdb|2EIP|A Chain A, Inorganic Pyrophosphatase
pdb|2EIP|B Chain B, Inorganic Pyrophosphatase
pdb|1IPW|A Chain A, Inorganic Pyrophosphatase From Escherichia Coli With Three
Magnesium Ions
pdb|1IPW|B Chain B, Inorganic Pyrophosphatase From Escherichia Coli With Three
Magnesium Ions
pdb|1JFD|A Chain A, Structure Of Inorganic Pyrophosphatase
pdb|1JFD|B Chain B, Structure Of Inorganic Pyrophosphatase
pdb|1FAJ|A Chain A, Inorganic Pyrophosphatase
pdb|1INO|A Chain A, Recombinant Inorganic Pyrophosphatase From Escherichia
Coli
Length = 175
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/67 (19%), Positives = 31/67 (46%)
Query: 232 LLVPSSLTSQSRNLLHPSTAGILTLLVLALRQRTWAGIKQENLLAQFNHLTSIDNLPTPL 291
+LVP+ Q +++ G+L + A + L +++H+ +++LP L
Sbjct: 71 VLVPTPYPLQPGSVIRCRPVGVLKMTDEAGEDAKLVAVPHSKLSKEYDHIKDVNDLPELL 130
Query: 292 QLEVLHL 298
+ ++ H
Sbjct: 131 KAQIAHF 137
>pdb|1MJZ|A Chain A, Structure Of Inorganic Pyrophosphatase Mutant D97n
Length = 175
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/67 (19%), Positives = 31/67 (46%)
Query: 232 LLVPSSLTSQSRNLLHPSTAGILTLLVLALRQRTWAGIKQENLLAQFNHLTSIDNLPTPL 291
+LVP+ Q +++ G+L + A + L +++H+ +++LP L
Sbjct: 71 VLVPTPYPLQPGSVIRCRPVGVLKMTNEAGEDAKLVAVPHSKLSKEYDHIKDVNDLPELL 130
Query: 292 QLEVLHL 298
+ ++ H
Sbjct: 131 KAQIAHF 137
>pdb|1MJW|A Chain A, Structure Of Inorganic Pyrophosphatase Mutant D42n
pdb|1MJW|B Chain B, Structure Of Inorganic Pyrophosphatase Mutant D42n
Length = 175
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/67 (19%), Positives = 31/67 (46%)
Query: 232 LLVPSSLTSQSRNLLHPSTAGILTLLVLALRQRTWAGIKQENLLAQFNHLTSIDNLPTPL 291
+LVP+ Q +++ G+L + A + L +++H+ +++LP L
Sbjct: 71 VLVPTPYPLQPGSVIRCRPVGVLKMTDEAGEDAKLVAVPHSKLSKEYDHIKDVNDLPELL 130
Query: 292 QLEVLHL 298
+ ++ H
Sbjct: 131 KAQIAHF 137
>pdb|1MJX|A Chain A, Structure Of Inorganic Pyrophosphatase Mutant D65n
pdb|1MJX|B Chain B, Structure Of Inorganic Pyrophosphatase Mutant D65n
Length = 175
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/67 (19%), Positives = 31/67 (46%)
Query: 232 LLVPSSLTSQSRNLLHPSTAGILTLLVLALRQRTWAGIKQENLLAQFNHLTSIDNLPTPL 291
+LVP+ Q +++ G+L + A + L +++H+ +++LP L
Sbjct: 71 VLVPTPYPLQPGSVIRCRPVGVLKMTDEAGEDAKLVAVPHSKLSKEYDHIKDVNDLPELL 130
Query: 292 QLEVLHL 298
+ ++ H
Sbjct: 131 KAQIAHF 137
>pdb|1PS6|A Chain A, Crystal Structure Of E.coli Pdxa
pdb|1PS6|B Chain B, Crystal Structure Of E.coli Pdxa
Length = 328
Score = 28.1 bits (61), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 231 MLLVPSSLTSQSRN-LLHPSTAGILTLLVLALRQRTWAG 268
ML +P +L S N P TAG LTLL +ALR AG
Sbjct: 48 MLGLPLTLRPYSPNSPAQPQTAGTLTLLPVALRAPVTAG 86
>pdb|1PTM|A Chain A, Crystal Structure Of E.Coli Pdxa
pdb|1PTM|B Chain B, Crystal Structure Of E.Coli Pdxa
Length = 329
Score = 28.1 bits (61), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Query: 228 GIDMLLVPSSLTSQSRNLLHPSTAGILTLLVLALRQRTWAG 268
G+ + L P S S ++ P TAG LTLL +ALR AG
Sbjct: 51 GLPLTLRPYSPNSPAQ----PQTAGTLTLLPVALRAPVTAG 87
>pdb|1PS7|A Chain A, Crystal Structure Of E.Coli Pdxa
pdb|1PS7|B Chain B, Crystal Structure Of E.Coli Pdxa
pdb|1PS7|C Chain C, Crystal Structure Of E.Coli Pdxa
pdb|1PS7|D Chain D, Crystal Structure Of E.Coli Pdxa
Length = 329
Score = 28.1 bits (61), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Query: 228 GIDMLLVPSSLTSQSRNLLHPSTAGILTLLVLALRQRTWAG 268
G+ + L P S S ++ P TAG LTLL +ALR AG
Sbjct: 51 GLPLTLRPYSPNSPAQ----PQTAGTLTLLPVALRAPVTAG 87
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,681,398
Number of Sequences: 62578
Number of extensions: 316205
Number of successful extensions: 654
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 648
Number of HSP's gapped (non-prelim): 9
length of query: 316
length of database: 14,973,337
effective HSP length: 99
effective length of query: 217
effective length of database: 8,778,115
effective search space: 1904850955
effective search space used: 1904850955
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)