Query 042030
Match_columns 322
No_of_seqs 313 out of 1185
Neff 11.5
Searched_HMMs 46136
Date Fri Mar 29 13:15:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042030.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042030hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0569 Permease of the major 100.0 4.3E-38 9.4E-43 264.8 28.8 303 2-306 137-472 (485)
2 KOG0254 Predicted transporter 100.0 4.8E-31 1E-35 231.9 29.6 308 1-308 162-503 (513)
3 TIGR00887 2A0109 phosphate:H+ 100.0 1.1E-29 2.4E-34 223.3 22.2 287 2-301 136-501 (502)
4 PF00083 Sugar_tr: Sugar (and 100.0 3.8E-35 8.2E-40 255.3 -16.0 299 1-303 122-451 (451)
5 PRK10077 xylE D-xylose transpo 100.0 1.5E-26 3.2E-31 203.0 28.6 292 2-306 141-475 (479)
6 TIGR01299 synapt_SV2 synaptic 100.0 5.1E-27 1.1E-31 210.2 23.0 288 2-296 276-741 (742)
7 TIGR00898 2A0119 cation transp 99.9 2E-25 4.4E-30 197.0 25.2 286 2-298 201-504 (505)
8 KOG0253 Synaptic vesicle trans 99.9 5.7E-25 1.2E-29 174.5 21.3 284 5-296 189-527 (528)
9 TIGR00879 SP MFS transporter, 99.9 4.6E-23 1E-27 180.9 26.1 294 3-297 149-479 (481)
10 KOG0255 Synaptic vesicle trans 99.9 4.4E-22 9.6E-27 176.2 27.8 297 2-304 192-508 (521)
11 PRK10642 proline/glycine betai 99.9 2.4E-21 5.3E-26 170.0 24.2 262 3-296 140-437 (490)
12 KOG0252 Inorganic phosphate tr 99.9 2.2E-22 4.9E-27 164.4 11.8 290 2-304 165-513 (538)
13 TIGR00903 2A0129 major facilit 99.9 1.3E-19 2.9E-24 152.6 19.9 239 4-285 101-362 (368)
14 PRK09952 shikimate transporter 99.8 4.2E-18 9.1E-23 147.5 22.6 251 3-292 147-436 (438)
15 PRK10406 alpha-ketoglutarate t 99.8 3.7E-18 8E-23 147.7 22.3 248 3-296 146-430 (432)
16 COG2271 UhpC Sugar phosphate p 99.8 4.5E-19 9.7E-24 144.4 12.4 262 4-289 140-435 (448)
17 PRK10489 enterobactin exporter 99.8 4.7E-18 1E-22 146.6 18.6 258 3-301 132-412 (417)
18 PRK11663 regulatory protein Uh 99.8 6E-18 1.3E-22 146.5 18.4 262 4-294 134-430 (434)
19 PRK12307 putative sialic acid 99.8 3.3E-17 7.1E-22 141.9 19.7 234 3-266 128-386 (426)
20 PRK11551 putative 3-hydroxyphe 99.8 9.7E-17 2.1E-21 138.0 20.8 222 3-264 125-370 (406)
21 TIGR00893 2A0114 d-galactonate 99.8 5.5E-17 1.2E-21 138.9 17.9 260 3-285 104-396 (399)
22 PRK15075 citrate-proton sympor 99.7 8.1E-16 1.8E-20 133.3 23.0 222 3-265 139-396 (434)
23 PRK11273 glpT sn-glycerol-3-ph 99.7 4.3E-16 9.4E-21 135.6 21.3 259 4-286 143-433 (452)
24 TIGR00712 glpT glycerol-3-phos 99.7 2.9E-16 6.3E-21 136.2 19.0 266 4-293 141-438 (438)
25 PRK03893 putative sialic acid 99.7 7.4E-16 1.6E-20 136.1 19.6 271 4-277 131-442 (496)
26 TIGR00894 2A0114euk Na(+)-depe 99.7 3.2E-16 6.9E-21 137.1 15.8 254 3-284 153-446 (465)
27 TIGR02332 HpaX 4-hydroxyphenyl 99.7 3.4E-16 7.3E-21 134.5 15.0 254 4-275 119-408 (412)
28 TIGR00891 2A0112 putative sial 99.7 3.4E-15 7.4E-20 128.4 21.3 242 3-265 122-392 (405)
29 PRK09556 uhpT sugar phosphate 99.7 6.7E-16 1.5E-20 135.0 16.2 258 4-285 145-446 (467)
30 TIGR00895 2A0115 benzoate tran 99.7 1.2E-15 2.6E-20 130.8 16.4 247 3-261 127-397 (398)
31 PRK03545 putative arabinose tr 99.7 9.1E-15 2E-19 125.1 21.7 237 3-288 119-380 (390)
32 COG2814 AraJ Arabinose efflux 99.7 1.9E-14 4.2E-19 118.8 21.6 237 3-286 123-384 (394)
33 KOG2532 Permease of the major 99.7 4.5E-15 9.7E-20 127.3 18.3 258 3-287 150-446 (466)
34 PRK11010 ampG muropeptide tran 99.7 1E-14 2.2E-19 127.9 20.9 249 3-291 129-405 (491)
35 TIGR00883 2A0106 metabolite-pr 99.7 2.2E-14 4.8E-19 122.7 20.5 222 3-264 118-375 (394)
36 PLN00028 nitrate transmembrane 99.7 1.1E-14 2.3E-19 127.5 18.1 246 4-286 146-431 (476)
37 KOG2533 Permease of the major 99.6 1.2E-15 2.6E-20 131.2 11.1 139 4-161 157-309 (495)
38 TIGR00892 2A0113 monocarboxyla 99.6 2.4E-15 5.2E-20 130.9 12.0 256 5-282 132-415 (455)
39 TIGR00881 2A0104 phosphoglycer 99.6 3.6E-15 7.8E-20 127.0 12.9 242 3-267 105-376 (379)
40 PRK09705 cynX putative cyanate 99.6 1.8E-13 3.9E-18 117.1 21.4 243 3-296 119-389 (393)
41 PRK10213 nepI ribonucleoside t 99.6 7.1E-13 1.5E-17 113.4 21.3 230 3-282 130-385 (394)
42 TIGR00890 2A0111 Oxalate/Forma 99.6 2.4E-13 5.2E-18 115.6 18.1 235 5-280 115-374 (377)
43 PRK11902 ampG muropeptide tran 99.6 7E-13 1.5E-17 113.9 21.0 240 4-284 117-386 (402)
44 PRK11646 multidrug resistance 99.6 8.2E-13 1.8E-17 113.2 20.3 216 4-264 122-359 (400)
45 PRK05122 major facilitator sup 99.6 9.5E-13 2.1E-17 113.0 20.6 74 220-294 320-394 (399)
46 PRK12382 putative transporter; 99.6 1.6E-12 3.4E-17 111.4 21.8 69 220-288 320-389 (392)
47 TIGR00899 2A0120 sugar efflux 99.5 1.5E-12 3.2E-17 110.9 20.7 232 5-284 111-370 (375)
48 TIGR00900 2A0121 H+ Antiporter 99.5 3.9E-13 8.5E-18 113.9 16.3 224 3-263 114-362 (365)
49 PRK15403 multidrug efflux syst 99.5 2.2E-12 4.7E-17 111.1 20.3 236 3-282 126-391 (413)
50 TIGR00710 efflux_Bcr_CflA drug 99.5 2.7E-12 5.9E-17 109.6 20.4 66 3-68 115-185 (385)
51 PRK11195 lysophospholipid tran 99.5 2.7E-12 5.9E-17 109.7 20.2 248 3-287 110-379 (393)
52 PRK03699 putative transporter; 99.5 2.2E-12 4.7E-17 110.6 19.5 233 3-283 117-375 (394)
53 COG2223 NarK Nitrate/nitrite t 99.5 1.9E-12 4.1E-17 106.2 17.2 244 2-287 125-400 (417)
54 TIGR00897 2A0118 polyol permea 99.5 4.3E-12 9.3E-17 109.0 20.5 242 5-286 129-399 (402)
55 PRK09874 drug efflux system pr 99.5 2.5E-12 5.4E-17 110.8 18.8 69 220-288 329-398 (408)
56 PRK15402 multidrug efflux syst 99.5 4.3E-12 9.4E-17 109.2 19.9 66 3-68 123-193 (406)
57 PRK10091 MFS transport protein 99.5 8.2E-12 1.8E-16 106.6 20.4 64 4-67 114-182 (382)
58 PRK06814 acylglycerophosphoeth 99.5 3.5E-12 7.6E-17 123.5 20.2 228 3-263 130-395 (1140)
59 PRK15011 sugar efflux transpor 99.5 1.1E-11 2.4E-16 106.2 20.9 65 224-290 327-392 (393)
60 TIGR00711 efflux_EmrB drug res 99.5 9.5E-13 2E-17 116.0 14.7 254 3-263 112-409 (485)
61 TIGR00902 2A0127 phenyl propri 99.5 2E-11 4.3E-16 104.2 22.0 227 12-282 123-373 (382)
62 TIGR00901 2A0125 AmpG-related 99.5 2.1E-12 4.6E-17 109.1 15.1 64 4-67 106-182 (356)
63 cd06174 MFS The Major Facilita 99.5 1.1E-11 2.4E-16 104.3 19.4 216 3-284 109-348 (352)
64 PRK08633 2-acyl-glycerophospho 99.5 7.9E-12 1.7E-16 121.4 20.9 253 3-290 125-412 (1146)
65 PRK11043 putative transporter; 99.5 2E-11 4.4E-16 104.9 21.2 214 4-263 117-356 (401)
66 TIGR02718 sider_RhtX_FptX side 99.5 3.6E-11 7.7E-16 103.0 22.2 236 6-282 122-385 (390)
67 PF07690 MFS_1: Major Facilita 99.5 1.3E-12 2.7E-17 110.2 13.1 219 3-255 107-352 (352)
68 PRK09528 lacY galactoside perm 99.4 1.1E-11 2.4E-16 107.2 18.3 69 222-290 335-405 (420)
69 PRK10504 putative transporter; 99.4 2.9E-11 6.2E-16 106.2 20.9 247 4-263 121-414 (471)
70 PRK10054 putative transporter; 99.4 1E-11 2.2E-16 106.3 17.1 63 4-66 119-185 (395)
71 PRK11102 bicyclomycin/multidru 99.4 3.8E-11 8.2E-16 102.3 20.6 65 3-67 101-170 (377)
72 PRK14995 methyl viologen resis 99.4 5.5E-11 1.2E-15 104.9 19.9 248 6-263 119-412 (495)
73 PRK10473 multidrug efflux syst 99.4 5.2E-11 1.1E-15 102.0 18.7 65 3-67 113-182 (392)
74 KOG1330 Sugar transporter/spin 99.4 5.9E-13 1.3E-17 110.2 5.9 68 1-68 141-214 (493)
75 TIGR00792 gph sugar (Glycoside 99.4 1E-10 2.2E-15 101.8 19.9 64 4-67 122-198 (437)
76 PRK11128 putative 3-phenylprop 99.4 2.8E-10 6.1E-15 97.1 22.1 227 12-280 123-371 (382)
77 PRK15034 nitrate/nitrite trans 99.4 1.7E-10 3.7E-15 98.9 19.8 237 4-288 150-454 (462)
78 TIGR00889 2A0110 nucleoside tr 99.4 1.2E-10 2.7E-15 100.3 18.9 75 220-294 326-408 (418)
79 PRK11652 emrD multidrug resist 99.4 2.7E-10 5.8E-15 97.7 20.8 216 5-263 120-359 (394)
80 PRK03633 putative MFS family t 99.3 7.1E-10 1.5E-14 94.7 21.8 64 219-282 302-366 (381)
81 PF05977 MFS_3: Transmembrane 99.3 2.5E-10 5.5E-15 100.0 18.8 242 4-284 126-390 (524)
82 COG2807 CynX Cyanate permease 99.3 8.4E-10 1.8E-14 89.1 18.5 231 3-284 121-381 (395)
83 TIGR00882 2A0105 oligosacchari 99.2 1.1E-09 2.4E-14 94.0 19.0 63 223-285 328-392 (396)
84 TIGR00896 CynX cyanate transpo 99.2 1.5E-09 3.2E-14 91.8 19.0 211 4-263 110-347 (355)
85 KOG2504 Monocarboxylate transp 99.2 6.1E-11 1.3E-15 103.4 10.7 266 9-289 162-476 (509)
86 TIGR01301 GPH_sucrose GPH fami 99.2 4.9E-09 1.1E-13 90.6 21.6 75 219-293 397-476 (477)
87 TIGR01272 gluP glucose/galacto 99.2 3.7E-09 8.1E-14 87.2 19.0 222 3-271 32-298 (310)
88 TIGR00886 2A0108 nitrite extru 99.2 3.8E-10 8.3E-15 95.8 12.6 66 3-68 112-193 (366)
89 PF11700 ATG22: Vacuole efflux 99.2 1.5E-08 3.3E-13 88.0 22.4 78 216-294 394-473 (477)
90 TIGR00885 fucP L-fucose:H+ sym 99.2 5.7E-09 1.2E-13 89.7 19.5 210 4-263 117-380 (410)
91 PRK10133 L-fucose transporter; 99.1 2.3E-08 5E-13 86.8 20.4 52 219-272 364-417 (438)
92 TIGR00806 rfc RFC reduced fola 99.1 3.3E-10 7.2E-15 95.8 8.2 245 3-258 136-409 (511)
93 TIGR00788 fbt folate/biopterin 99.1 2.8E-09 6E-14 93.2 13.5 53 210-263 360-412 (468)
94 COG2271 UhpC Sugar phosphate p 99.1 4E-09 8.7E-14 87.0 13.3 156 124-291 27-209 (448)
95 KOG2615 Permease of the major 99.1 2.6E-09 5.7E-14 86.7 12.0 46 218-263 368-413 (451)
96 COG0738 FucP Fucose permease [ 99.0 5.6E-08 1.2E-12 79.9 18.4 230 3-281 126-402 (422)
97 PF03825 Nuc_H_symport: Nucleo 99.0 2.3E-07 5.1E-12 79.1 22.7 80 211-291 311-398 (400)
98 PRK10429 melibiose:sodium symp 99.0 3.4E-08 7.3E-13 86.8 18.1 44 220-263 342-392 (473)
99 PF06609 TRI12: Fungal trichot 99.0 9.7E-08 2.1E-12 84.1 20.5 55 5-59 154-212 (599)
100 PRK11462 putative transporter; 99.0 1.8E-07 3.9E-12 81.8 21.8 63 4-66 132-207 (460)
101 TIGR00805 oat sodium-independe 99.0 2.5E-08 5.5E-13 90.1 16.2 152 2-167 193-372 (633)
102 PRK09669 putative symporter Ya 99.0 1.1E-07 2.4E-12 83.0 19.1 45 219-263 336-387 (444)
103 COG2211 MelB Na+/melibiose sym 99.0 1.5E-07 3.3E-12 80.1 18.6 64 4-67 135-211 (467)
104 TIGR00924 yjdL_sub1_fam amino 99.0 5.4E-08 1.2E-12 85.4 16.6 88 201-289 381-469 (475)
105 TIGR00895 2A0115 benzoate tran 98.9 5.9E-08 1.3E-12 83.2 15.7 74 219-292 122-196 (398)
106 PTZ00207 hypothetical protein; 98.9 1.6E-07 3.5E-12 83.2 18.3 77 5-82 144-226 (591)
107 PF13347 MFS_2: MFS/sugar tran 98.9 4.5E-07 9.8E-12 78.7 20.5 216 4-263 126-383 (428)
108 PF01306 LacY_symp: LacY proto 98.9 5.9E-07 1.3E-11 75.7 20.0 92 201-293 312-405 (412)
109 PRK11663 regulatory protein Uh 98.9 1.4E-07 3.1E-12 82.0 15.8 72 220-291 129-201 (434)
110 TIGR02332 HpaX 4-hydroxyphenyl 98.8 4.6E-07 1E-11 78.2 17.7 164 125-293 7-194 (412)
111 PRK10207 dipeptide/tripeptide 98.8 6E-07 1.3E-11 79.0 18.1 69 219-287 396-475 (489)
112 PRK09584 tppB putative tripept 98.8 2.7E-07 5.8E-12 81.5 15.9 53 4-56 135-193 (500)
113 TIGR00710 efflux_Bcr_CflA drug 98.8 9E-07 2E-11 75.6 17.3 75 220-294 111-186 (385)
114 PRK10642 proline/glycine betai 98.8 5.7E-09 1.2E-13 92.1 3.6 85 3-88 364-459 (490)
115 PRK10054 putative transporter; 98.7 7.2E-07 1.6E-11 76.6 16.4 74 219-292 113-186 (395)
116 KOG3626 Organic anion transpor 98.7 2.1E-06 4.6E-11 76.7 19.0 151 1-171 257-438 (735)
117 PRK09848 glucuronide transport 98.7 2.2E-06 4.8E-11 74.9 18.8 44 220-263 337-387 (448)
118 TIGR00893 2A0114 d-galactonate 98.7 3.7E-07 8E-12 78.1 13.8 75 219-293 99-174 (399)
119 KOG2563 Permease of the major 98.7 1.7E-07 3.8E-12 78.1 10.7 84 212-295 369-457 (480)
120 PRK03545 putative arabinose tr 98.7 2.5E-06 5.3E-11 73.2 17.9 74 219-292 114-188 (390)
121 COG2814 AraJ Arabinose efflux 98.7 3E-06 6.4E-11 70.9 17.1 142 141-289 28-189 (394)
122 PRK10473 multidrug efflux syst 98.7 1.5E-06 3.3E-11 74.5 15.7 75 220-294 109-184 (392)
123 TIGR01299 synapt_SV2 synaptic 98.7 3.1E-06 6.7E-11 77.5 18.2 72 219-291 272-357 (742)
124 TIGR00712 glpT glycerol-3-phos 98.6 2.7E-06 5.8E-11 74.2 15.3 71 221-291 137-209 (438)
125 PRK10213 nepI ribonucleoside t 98.6 7.1E-06 1.5E-10 70.4 17.3 74 219-292 125-199 (394)
126 PLN00028 nitrate transmembrane 98.6 7.4E-06 1.6E-10 72.1 17.6 67 224-290 145-221 (476)
127 PRK11273 glpT sn-glycerol-3-ph 98.5 7E-06 1.5E-10 71.9 17.0 73 220-292 138-212 (452)
128 TIGR00891 2A0112 putative sial 98.5 9.3E-06 2E-10 69.9 17.3 162 125-292 11-192 (405)
129 PRK11551 putative 3-hydroxyphe 98.5 3.5E-06 7.6E-11 72.7 14.6 73 220-292 121-194 (406)
130 TIGR00711 efflux_EmrB drug res 98.5 1.9E-06 4.2E-11 76.1 13.2 75 219-293 107-182 (485)
131 PRK14995 methyl viologen resis 98.5 3.9E-06 8.5E-11 74.3 15.0 162 127-293 7-187 (495)
132 TIGR00881 2A0104 phosphoglycer 98.5 8.6E-07 1.9E-11 75.5 9.9 74 219-292 100-175 (379)
133 KOG4686 Predicted sugar transp 98.5 6.5E-06 1.4E-10 64.8 13.3 40 224-263 374-413 (459)
134 PRK09874 drug efflux system pr 98.5 1.9E-05 4.2E-10 68.1 18.0 74 219-292 123-197 (408)
135 PRK11646 multidrug resistance 98.5 1.2E-05 2.5E-10 69.3 16.3 73 219-291 116-188 (400)
136 PRK03893 putative sialic acid 98.5 5.9E-06 1.3E-10 73.3 14.9 72 219-291 125-197 (496)
137 PRK10504 putative transporter; 98.5 1.2E-05 2.5E-10 70.9 16.6 73 219-291 115-188 (471)
138 PRK15402 multidrug efflux syst 98.5 3.5E-05 7.7E-10 66.5 18.8 74 220-293 119-193 (406)
139 KOG3764 Vesicular amine transp 98.4 6.5E-07 1.4E-11 73.6 6.9 63 3-65 181-248 (464)
140 COG2270 Permeases of the major 98.4 2.1E-05 4.6E-10 65.6 15.8 76 218-294 357-434 (438)
141 PRK10091 MFS transport protein 98.4 1.5E-05 3.3E-10 68.1 15.7 73 221-293 110-183 (382)
142 PRK09556 uhpT sugar phosphate 98.4 7.2E-06 1.6E-10 72.1 14.0 71 220-290 140-214 (467)
143 PRK11652 emrD multidrug resist 98.4 4E-05 8.6E-10 65.9 18.1 74 220-293 114-188 (394)
144 PRK15403 multidrug efflux syst 98.4 2E-05 4.4E-10 68.1 16.3 74 220-293 122-196 (413)
145 PRK15462 dipeptide/tripeptide 98.4 5.4E-05 1.2E-09 66.2 18.7 54 3-56 122-181 (493)
146 PRK10489 enterobactin exporter 98.4 1.9E-05 4.2E-10 68.4 16.1 71 221-292 129-200 (417)
147 PRK11102 bicyclomycin/multidru 98.4 1.1E-05 2.4E-10 68.8 13.8 74 219-292 96-170 (377)
148 PRK12307 putative sialic acid 98.4 1.4E-05 2.9E-10 69.5 14.5 54 219-272 123-177 (426)
149 PRK15034 nitrate/nitrite trans 98.4 4.1E-05 9E-10 66.2 16.8 73 219-291 144-235 (462)
150 PRK03699 putative transporter; 98.4 6.2E-05 1.3E-09 64.7 17.9 64 220-283 113-178 (394)
151 COG2223 NarK Nitrate/nitrite t 98.4 2E-05 4.3E-10 65.6 13.9 75 215-290 117-195 (417)
152 TIGR00894 2A0114euk Na(+)-depe 98.4 1.1E-05 2.5E-10 70.9 13.4 75 217-291 146-222 (465)
153 PRK15462 dipeptide/tripeptide 98.3 3.4E-05 7.3E-10 67.5 15.6 61 220-280 118-181 (493)
154 TIGR00903 2A0129 major facilit 98.3 1.7E-05 3.7E-10 67.3 13.6 72 221-292 97-169 (368)
155 PF07690 MFS_1: Major Facilita 98.3 6.6E-06 1.4E-10 69.3 11.2 74 218-291 101-175 (352)
156 PF03137 OATP: Organic Anion T 98.3 9.9E-08 2.2E-12 84.2 0.0 163 1-171 161-351 (539)
157 PF03209 PUCC: PUCC protein; 98.3 0.00021 4.6E-09 59.7 18.6 37 4-40 112-148 (403)
158 TIGR00900 2A0121 H+ Antiporter 98.3 5.6E-05 1.2E-09 64.0 15.8 67 219-285 109-176 (365)
159 TIGR00886 2A0108 nitrite extru 98.2 6.5E-05 1.4E-09 63.8 15.3 72 220-291 108-191 (366)
160 TIGR00879 SP MFS transporter, 98.2 3E-05 6.4E-10 68.2 13.2 72 219-291 144-219 (481)
161 PTZ00207 hypothetical protein; 98.2 0.00025 5.5E-09 63.3 18.5 68 222-290 140-207 (591)
162 PF03092 BT1: BT1 family; Int 98.2 1.3E-05 2.7E-10 69.5 10.1 47 216-263 333-379 (433)
163 TIGR00924 yjdL_sub1_fam amino 98.2 8.6E-05 1.9E-09 65.4 15.3 64 219-282 119-186 (475)
164 KOG2816 Predicted transporter 98.2 3.1E-05 6.8E-10 67.0 12.2 66 2-67 133-203 (463)
165 PRK11902 ampG muropeptide tran 98.2 0.00026 5.6E-09 61.1 17.8 152 138-292 11-185 (402)
166 TIGR00892 2A0113 monocarboxyla 98.2 4.9E-05 1.1E-09 66.6 13.4 68 221-289 127-195 (455)
167 PF06813 Nodulin-like: Nodulin 98.2 9.2E-05 2E-09 58.5 13.2 147 140-288 16-181 (250)
168 TIGR00901 2A0125 AmpG-related 98.2 0.0002 4.3E-09 60.7 16.4 74 219-292 100-182 (356)
169 PRK11043 putative transporter; 98.2 0.00029 6.3E-09 60.7 17.5 66 222-287 114-180 (401)
170 TIGR00887 2A0109 phosphate:H+ 98.1 0.00055 1.2E-08 60.9 19.5 43 219-261 132-174 (502)
171 TIGR00880 2_A_01_02 Multidrug 98.1 5.1E-05 1.1E-09 54.4 10.6 73 219-291 68-141 (141)
172 PRK10077 xylE D-xylose transpo 98.1 0.00016 3.5E-09 63.9 15.5 73 219-292 137-218 (479)
173 PRK10207 dipeptide/tripeptide 98.1 0.00023 4.9E-09 62.9 16.0 67 219-286 122-191 (489)
174 TIGR00897 2A0118 polyol permea 98.1 0.00013 2.8E-09 62.9 14.1 68 223-290 126-195 (402)
175 TIGR00890 2A0111 Oxalate/Forma 98.1 5.7E-05 1.2E-09 64.2 11.3 67 223-290 112-179 (377)
176 PF05977 MFS_3: Transmembrane 98.1 0.00053 1.2E-08 60.8 17.3 81 201-282 103-184 (524)
177 PRK11010 ampG muropeptide tran 98.0 0.00044 9.5E-09 61.3 16.7 75 217-292 122-198 (491)
178 PRK09584 tppB putative tripept 98.0 0.00051 1.1E-08 61.0 16.6 62 219-280 129-193 (500)
179 PRK11195 lysophospholipid tran 98.0 0.00067 1.5E-08 58.3 16.6 76 216-292 102-177 (393)
180 cd06174 MFS The Major Facilita 98.0 0.00045 9.8E-09 58.0 15.3 65 219-283 104-169 (352)
181 TIGR00805 oat sodium-independe 98.0 0.00013 2.9E-09 66.3 12.4 74 218-292 188-284 (633)
182 PF01770 Folate_carrier: Reduc 98.0 0.00011 2.4E-09 61.9 10.9 152 4-156 116-277 (412)
183 PRK06814 acylglycerophosphoeth 98.0 0.00061 1.3E-08 67.0 17.6 79 213-292 119-198 (1140)
184 TIGR01301 GPH_sucrose GPH fami 97.9 0.00081 1.8E-08 58.7 15.9 71 222-292 134-222 (477)
185 PRK05122 major facilitator sup 97.9 0.0014 2.9E-08 56.5 17.5 57 219-275 129-186 (399)
186 PRK03633 putative MFS family t 97.9 0.00093 2E-08 57.2 16.2 118 141-263 21-155 (381)
187 TIGR00885 fucP L-fucose:H+ sym 97.9 0.0011 2.3E-08 57.4 16.5 64 221-284 113-203 (410)
188 PRK15011 sugar efflux transpor 97.9 0.00098 2.1E-08 57.3 16.2 76 218-293 121-199 (393)
189 TIGR00899 2A0120 sugar efflux 97.9 0.00078 1.7E-08 57.4 15.0 74 219-292 104-180 (375)
190 TIGR00806 rfc RFC reduced fola 97.9 0.0015 3.2E-08 56.4 15.9 83 206-290 120-204 (511)
191 KOG2325 Predicted transporter/ 97.9 3.4E-05 7.4E-10 66.3 6.2 60 223-282 409-469 (488)
192 KOG2533 Permease of the major 97.8 0.00036 7.7E-09 61.1 12.4 83 211-293 143-232 (495)
193 TIGR02718 sider_RhtX_FptX side 97.8 0.0026 5.7E-08 54.6 17.3 72 219-290 114-186 (390)
194 PRK12382 putative transporter; 97.8 0.0017 3.6E-08 55.8 15.9 49 220-268 130-179 (392)
195 PRK09528 lacY galactoside perm 97.8 0.00064 1.4E-08 59.0 12.9 57 234-290 137-193 (420)
196 KOG3810 Micronutrient transpor 97.7 0.00059 1.3E-08 55.6 10.8 268 3-286 116-419 (433)
197 PRK09705 cynX putative cyanate 97.7 0.0031 6.7E-08 54.2 16.3 132 142-279 25-175 (393)
198 TIGR00902 2A0127 phenyl propri 97.7 0.002 4.4E-08 55.1 15.1 126 142-276 20-167 (382)
199 KOG3764 Vesicular amine transp 97.7 9.5E-05 2E-09 61.3 6.1 76 220-295 177-254 (464)
200 PRK08633 2-acyl-glycerophospho 97.7 0.0027 6E-08 62.5 17.2 47 218-264 119-165 (1146)
201 KOG1330 Sugar transporter/spin 97.7 4.4E-05 9.5E-10 64.4 3.9 82 216-297 135-218 (493)
202 PF06609 TRI12: Fungal trichot 97.7 0.0014 3.1E-08 58.4 13.4 81 203-285 133-214 (599)
203 TIGR00898 2A0119 cation transp 97.7 0.0011 2.3E-08 59.1 12.9 71 218-291 196-266 (505)
204 PRK11128 putative 3-phenylprop 97.7 0.0033 7.2E-08 53.8 15.3 140 142-291 20-181 (382)
205 PRK10406 alpha-ketoglutarate t 97.6 0.0038 8.2E-08 54.5 15.4 72 219-291 141-221 (432)
206 PRK15075 citrate-proton sympor 97.6 0.0028 6.1E-08 55.3 14.6 53 220-272 135-196 (434)
207 KOG2615 Permease of the major 97.6 0.0002 4.2E-09 59.1 6.7 51 213-263 131-181 (451)
208 TIGR00880 2_A_01_02 Multidrug 97.6 9.3E-05 2E-09 53.0 4.0 64 3-66 73-141 (141)
209 COG3104 PTR2 Dipeptide/tripept 97.5 0.0061 1.3E-07 52.5 14.7 84 206-289 398-488 (498)
210 KOG2325 Predicted transporter/ 97.5 0.0024 5.3E-08 55.2 12.0 91 201-293 130-234 (488)
211 PRK11462 putative transporter; 97.5 0.013 2.7E-07 51.6 16.8 81 210-291 118-207 (460)
212 KOG2532 Permease of the major 97.5 0.0044 9.5E-08 54.2 13.4 85 205-290 132-218 (466)
213 PRK09669 putative symporter Ya 97.4 0.0088 1.9E-07 52.4 15.5 81 210-291 118-207 (444)
214 TIGR00792 gph sugar (Glycoside 97.4 0.0074 1.6E-07 52.6 14.9 69 224-292 121-198 (437)
215 KOG2504 Monocarboxylate transp 97.3 0.0046 1E-07 54.7 12.0 76 212-289 146-222 (509)
216 PRK10133 L-fucose transporter; 97.3 0.028 6E-07 49.2 16.7 117 142-262 42-177 (438)
217 KOG0569 Permease of the major 97.3 0.013 2.8E-07 51.1 14.2 88 202-291 117-207 (485)
218 PRK09952 shikimate transporter 97.3 0.014 3.1E-07 51.0 14.8 72 219-291 142-222 (438)
219 TIGR00882 2A0105 oligosacchari 97.2 0.0076 1.6E-07 51.9 12.1 68 221-290 118-185 (396)
220 TIGR00896 CynX cyanate transpo 97.2 0.025 5.4E-07 47.8 14.9 55 222-277 107-164 (355)
221 PF13347 MFS_2: MFS/sugar tran 97.1 0.0075 1.6E-07 52.5 11.2 84 206-290 108-200 (428)
222 COG3104 PTR2 Dipeptide/tripept 97.1 0.008 1.7E-07 51.8 10.5 67 219-285 134-203 (498)
223 PF07672 MFS_Mycoplasma: Mycop 97.0 0.08 1.7E-06 41.8 14.8 52 12-63 1-61 (267)
224 COG2211 MelB Na+/melibiose sym 97.0 0.038 8.2E-07 47.9 13.8 147 142-291 28-210 (467)
225 KOG0255 Synaptic vesicle trans 96.9 0.013 2.9E-07 52.4 11.6 80 210-292 179-258 (521)
226 KOG3098 Uncharacterized conser 96.9 0.15 3.2E-06 44.3 16.9 43 218-261 369-411 (461)
227 PRK10429 melibiose:sodium symp 96.7 0.08 1.7E-06 46.9 14.3 49 212-261 117-166 (473)
228 COG0738 FucP Fucose permease [ 96.7 0.13 2.8E-06 43.5 14.3 66 220-285 122-207 (422)
229 PF06963 FPN1: Ferroportin1 (F 96.7 0.36 7.9E-06 41.9 18.1 35 223-257 377-411 (432)
230 TIGR00889 2A0110 nucleoside tr 96.7 0.001 2.3E-08 57.6 2.3 64 3-66 330-405 (418)
231 TIGR00788 fbt folate/biopterin 96.6 0.1 2.3E-06 46.1 14.2 72 219-292 137-212 (468)
232 TIGR01272 gluP glucose/galacto 96.5 0.015 3.3E-07 48.2 8.0 74 219-292 27-118 (310)
233 TIGR00883 2A0106 metabolite-pr 96.5 0.092 2E-06 44.8 13.1 72 219-291 113-193 (394)
234 PF01306 LacY_symp: LacY proto 96.4 0.0059 1.3E-07 52.0 5.1 53 237-289 137-189 (412)
235 KOG3762 Predicted transporter 96.4 0.0068 1.5E-07 52.7 5.3 84 199-283 457-542 (618)
236 PF02487 CLN3: CLN3 protein; 96.3 0.34 7.3E-06 41.4 14.9 39 224-262 357-395 (402)
237 PF03092 BT1: BT1 family; Int 96.3 0.24 5.3E-06 43.2 14.4 68 223-291 107-178 (433)
238 KOG2816 Predicted transporter 96.1 0.23 4.9E-06 43.6 13.3 79 220-298 130-209 (463)
239 PF03209 PUCC: PUCC protein; 96.1 0.18 3.9E-06 42.8 12.0 46 222-267 109-155 (403)
240 KOG0254 Predicted transporter 95.9 0.25 5.4E-06 44.3 13.2 88 201-291 142-232 (513)
241 TIGR00926 2A1704 Peptide:H+ sy 95.7 1.3 2.7E-05 41.0 16.8 65 219-283 102-177 (654)
242 PF13000 Acatn: Acetyl-coenzym 95.3 0.42 9.2E-06 41.7 11.6 45 219-263 422-466 (544)
243 PRK09848 glucuronide transport 95.3 1.8 3.9E-05 38.0 16.2 26 146-171 28-54 (448)
244 PF03825 Nuc_H_symport: Nucleo 95.0 1.1 2.3E-05 38.8 13.4 30 142-171 18-47 (400)
245 PF00854 PTR2: POT family; In 94.6 0.3 6.6E-06 41.7 9.2 82 203-285 35-120 (372)
246 COG2807 CynX Cyanate permease 94.5 2.6 5.5E-05 35.5 15.9 133 144-283 30-181 (395)
247 KOG0253 Synaptic vesicle trans 94.2 1.5 3.4E-05 37.0 11.6 80 211-292 174-254 (528)
248 KOG0252 Inorganic phosphate tr 93.1 0.085 1.9E-06 45.3 3.0 66 3-68 428-502 (538)
249 KOG3574 Acetyl-CoA transporter 92.8 2.7 5.8E-05 35.7 10.9 52 212-263 379-430 (510)
250 PF00083 Sugar_tr: Sugar (and 92.7 0.0037 8E-08 54.8 -6.0 72 219-291 119-194 (451)
251 PF11700 ATG22: Vacuole efflux 92.3 7.9 0.00017 34.4 17.7 72 222-293 146-252 (477)
252 TIGR00769 AAA ADP/ATP carrier 92.2 7.9 0.00017 34.3 18.5 37 4-40 152-188 (472)
253 KOG3626 Organic anion transpor 91.4 1.9 4.1E-05 39.9 9.4 76 219-295 254-349 (735)
254 TIGR00769 AAA ADP/ATP carrier 89.7 14 0.0003 32.8 14.2 49 214-262 140-189 (472)
255 PF05631 DUF791: Protein of un 89.5 12 0.00026 31.6 17.8 65 230-294 154-222 (354)
256 PF03137 OATP: Organic Anion T 88.1 0.098 2.1E-06 46.9 -1.1 69 219-287 158-249 (539)
257 TIGR00939 2a57 Equilibrative N 87.8 18 0.0004 31.8 14.3 38 220-257 390-427 (437)
258 KOG1237 H+/oligopeptide sympor 86.7 10 0.00022 34.6 10.5 38 226-263 482-519 (571)
259 PF06813 Nodulin-like: Nodulin 85.4 2.1 4.6E-05 34.2 5.1 58 8-66 123-184 (250)
260 PF01733 Nucleoside_tran: Nucl 85.2 0.27 5.9E-06 40.8 0.0 38 220-257 266-303 (309)
261 KOG2563 Permease of the major 85.2 25 0.00055 30.8 13.7 37 226-262 164-200 (480)
262 COG5336 Uncharacterized protei 84.7 1.4 2.9E-05 29.4 3.0 32 232-263 36-67 (116)
263 PF03219 TLC: TLC ATP/ADP tran 84.4 30 0.00065 31.0 16.4 37 4-40 167-203 (491)
264 PF02487 CLN3: CLN3 protein; 84.3 21 0.00045 30.9 10.8 82 202-289 113-196 (402)
265 PF03219 TLC: TLC ATP/ADP tran 83.7 4.5 9.7E-05 36.0 6.8 42 222-263 164-205 (491)
266 PRK10697 DNA-binding transcrip 80.1 2.9 6.4E-05 28.8 3.5 32 57-88 57-88 (118)
267 KOG0637 Sucrose transporter an 77.1 9.3 0.0002 33.4 6.3 133 125-259 32-200 (498)
268 PRK03612 spermidine synthase; 75.7 62 0.0014 29.3 14.6 48 237-284 144-193 (521)
269 TIGR02978 phageshock_pspC phag 74.7 6.3 0.00014 27.4 3.9 27 42-68 31-63 (121)
270 PF11151 DUF2929: Protein of u 74.4 15 0.00033 21.6 5.1 42 26-67 15-56 (57)
271 COG3202 ATP/ADP translocase [E 73.9 65 0.0014 28.7 18.0 65 6-70 173-255 (509)
272 PF00854 PTR2: POT family; In 71.8 11 0.00023 32.3 5.6 58 4-61 56-120 (372)
273 COG1422 Predicted membrane pro 69.5 48 0.001 25.3 7.8 26 41-66 45-71 (201)
274 KOG3762 Predicted transporter 66.2 7 0.00015 34.9 3.3 57 3-59 481-542 (618)
275 COG2270 Permeases of the major 65.6 5 0.00011 34.5 2.3 63 4-66 364-431 (438)
276 PF10183 ESSS: ESSS subunit of 63.8 19 0.00041 24.4 4.4 27 41-67 58-85 (105)
277 KOG1479 Nucleoside transporter 62.2 1.1E+02 0.0023 26.7 13.1 21 136-156 28-48 (406)
278 PF05978 UNC-93: Ion channel r 59.9 67 0.0014 23.6 10.6 57 202-259 90-146 (156)
279 KOG1479 Nucleoside transporter 56.8 1.3E+02 0.0029 26.1 10.8 41 214-254 354-395 (406)
280 PF13829 DUF4191: Domain of un 55.6 57 0.0012 25.5 6.2 54 35-88 44-99 (224)
281 PF06645 SPC12: Microsomal sig 55.0 38 0.00083 21.3 4.4 35 20-54 11-46 (76)
282 KOG3880 Predicted small molecu 54.9 20 0.00044 29.8 3.9 35 227-261 367-401 (409)
283 PF06963 FPN1: Ferroportin1 (F 54.0 1.6E+02 0.0034 26.1 13.9 54 234-287 145-199 (432)
284 COG0477 ProP Permeases of the 53.9 18 0.00038 29.1 3.7 54 3-56 116-177 (338)
285 PF04281 Tom22: Mitochondrial 52.4 36 0.00077 24.3 4.3 23 227-249 60-82 (137)
286 PF08997 UCR_6-4kD: Ubiquinol- 51.3 16 0.00034 21.3 2.0 38 9-46 5-42 (56)
287 PF07857 DUF1632: CEO family ( 48.2 1E+02 0.0022 24.9 6.7 25 42-66 114-138 (254)
288 KOG4686 Predicted sugar transp 46.4 18 0.00038 29.8 2.3 58 5-62 376-441 (459)
289 PF07857 DUF1632: CEO family ( 45.3 43 0.00092 26.9 4.3 27 233-259 74-100 (254)
290 KOG3312 Predicted membrane pro 44.8 59 0.0013 23.3 4.4 33 58-90 25-57 (186)
291 TIGR00986 3a0801s05tom22 mitoc 43.0 57 0.0012 23.4 4.1 22 227-248 58-79 (145)
292 PRK00888 ftsB cell division pr 40.7 1E+02 0.0022 20.9 5.0 34 68-101 28-61 (105)
293 COG3462 Predicted membrane pro 40.6 65 0.0014 21.7 3.8 24 77-100 88-111 (117)
294 PF04024 PspC: PspC domain; I 39.1 49 0.0011 19.8 2.9 27 41-67 30-60 (61)
295 TIGR00939 2a57 Equilibrative N 39.1 2.8E+02 0.006 24.6 9.3 11 224-235 128-138 (437)
296 PF15050 SCIMP: SCIMP protein 38.7 22 0.00049 24.3 1.6 41 42-82 4-46 (133)
297 COG1288 Predicted membrane pro 38.0 2.1E+02 0.0045 25.3 7.3 28 41-68 217-246 (481)
298 PF01770 Folate_carrier: Reduc 37.8 2.8E+02 0.0061 24.3 14.4 40 224-263 115-154 (412)
299 PF11947 DUF3464: Protein of u 36.9 1.7E+02 0.0036 21.5 6.0 40 214-253 106-145 (153)
300 PF12273 RCR: Chitin synthesis 36.9 15 0.00032 26.0 0.6 17 43-59 1-17 (130)
301 PF01405 PsbT: Photosystem II 36.0 59 0.0013 16.0 2.8 10 59-68 19-28 (29)
302 PF10066 DUF2304: Uncharacteri 35.5 1.2E+02 0.0026 20.9 4.9 13 251-263 46-58 (115)
303 PF05297 Herpes_LMP1: Herpesvi 35.3 11 0.00023 30.3 -0.4 15 280-294 177-191 (381)
304 PF15061 DUF4538: Domain of un 35.3 36 0.00078 20.0 1.8 19 41-59 4-22 (58)
305 KOG3810 Micronutrient transpor 33.8 80 0.0017 27.0 4.3 40 224-263 116-155 (433)
306 PF06667 PspB: Phage shock pro 32.7 1E+02 0.0022 19.4 3.6 26 76-101 37-62 (75)
307 PRK09458 pspB phage shock prot 32.4 1.3E+02 0.0028 18.9 4.1 31 58-88 19-49 (75)
308 PF06779 DUF1228: Protein of u 31.7 1.5E+02 0.0032 19.2 6.1 41 19-59 29-73 (85)
309 KOG3796 Ammonium transporter R 31.7 2.3E+02 0.005 24.3 6.5 68 224-291 161-230 (442)
310 PRK11875 psbT photosystem II r 29.7 83 0.0018 15.7 2.6 10 59-68 19-28 (31)
311 PF13000 Acatn: Acetyl-coenzym 29.5 1.7E+02 0.0038 26.4 5.8 32 230-261 146-177 (544)
312 COG1422 Predicted membrane pro 29.2 1.2E+02 0.0025 23.4 4.1 6 270-275 50-55 (201)
313 PF05631 DUF791: Protein of un 29.0 1.2E+02 0.0027 25.8 4.7 28 126-153 245-272 (354)
314 TIGR00926 2A1704 Peptide:H+ sy 28.6 5.1E+02 0.011 24.5 15.7 56 4-59 108-177 (654)
315 PF01277 Oleosin: Oleosin; In 28.1 44 0.00096 23.1 1.7 9 252-260 42-50 (118)
316 CHL00031 psbT photosystem II p 27.8 94 0.002 15.8 2.5 10 59-68 19-28 (33)
317 PF03547 Mem_trans: Membrane t 26.6 2.7E+02 0.0059 23.9 6.8 27 232-259 90-116 (385)
318 KOG2881 Predicted membrane pro 26.5 2.4E+02 0.0053 22.8 5.5 72 238-318 107-178 (294)
319 PF14715 FixP_N: N-terminal do 26.2 1.4E+02 0.003 17.1 3.3 24 41-64 23-46 (51)
320 PF14012 DUF4229: Protein of u 25.6 1.7E+02 0.0037 18.0 4.7 47 244-290 4-53 (69)
321 TIGR02976 phageshock_pspB phag 25.4 1.7E+02 0.0036 18.5 3.7 8 81-88 42-49 (75)
322 PF10183 ESSS: ESSS subunit of 23.9 1.9E+02 0.004 19.6 4.1 32 264-295 57-88 (105)
323 PF12732 YtxH: YtxH-like prote 23.4 1.6E+02 0.0034 18.2 3.5 18 277-294 9-26 (74)
324 PF13721 SecD-TM1: SecD export 23.4 1.3E+02 0.0028 20.2 3.2 28 41-68 6-33 (101)
325 COG4736 CcoQ Cbb3-type cytochr 22.1 87 0.0019 18.7 1.9 12 284-295 27-38 (60)
326 TIGR02230 ATPase_gene1 F0F1-AT 21.4 2.7E+02 0.0058 18.7 6.3 26 27-52 53-86 (100)
327 PF11511 RhodobacterPufX: Intr 21.3 2.1E+02 0.0045 17.5 5.1 18 277-294 41-58 (67)
328 PF05545 FixQ: Cbb3-type cytoc 20.8 90 0.0019 17.5 1.8 11 281-291 24-34 (49)
329 KOG3574 Acetyl-CoA transporter 20.4 6E+02 0.013 22.5 10.1 33 126-160 32-64 (510)
330 PRK03612 spermidine synthase; 20.2 2.6E+02 0.0056 25.5 5.4 41 16-56 144-190 (521)
No 1
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.3e-38 Score=264.76 Aligned_cols=303 Identities=28% Similarity=0.441 Sum_probs=242.1
Q ss_pred cceeeeeecCCCCchhhHHHHHHHHHHHHHHHHHhhhhh------hhHHHHHHhhHHHHHHHHHhhccCCChHHHHh-cC
Q 042030 2 IPIYIAEITPKNIRGAFTATSQFLIVSGMSVMYLVGTIV------SWRALALIAAVPCLLQVVGLFFIPESPRWLAK-IG 74 (322)
Q Consensus 2 ~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~l~~~~~~~~------~Wr~~f~~~~~~~~i~~~~~~~lpesp~~l~~-~~ 74 (322)
.+.|+.|..|.+.||....+.+.+..+|.+++..++..- .|++.+.+..+++++.++...++|||||||.. |+
T Consensus 137 ~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~k~ 216 (485)
T KOG0569|consen 137 VPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPFLPESPKYLLIKKG 216 (485)
T ss_pred HHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHcC
Confidence 477999999999999999999999999999997776432 69999999999999999999999999999987 89
Q ss_pred CHHHHHHHHHHHhCCchhhhhhHHHHHHhhhh-cccccccchhhhcchh-hHHHHHHHHHHHhhhhccchhhhHhcHHHH
Q 042030 75 KEKELETTLQCLRGKTADISMESADIRDCTQT-FEKDSKAGIFDLFQRR-YAYSLSVGVGLMVMQPFVGSAAIAYYASYI 152 (322)
Q Consensus 75 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (322)
|+++|++.+++.++++.+.++..++.++.+++ .+++++.+++++++++ .+++..+.+.+..++++++.+.+.+|...+
T Consensus 217 ~~~~A~~sl~~y~G~~~~~~~~e~~~~e~~~~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i 296 (485)
T KOG0569|consen 217 DEEEARKALKFYRGKEDVEAEIEEMLREIEEEELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSI 296 (485)
T ss_pred CHHHHHHHHHHHhCCCcchhHHHHHHHHHHHhccccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHH
Confidence 99999999999998863333322222222222 2223667899999875 556677888899999999999999999999
Q ss_pred HHHcCCCchh---HHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHhccCCCCCCchhHHHHHHH
Q 042030 153 IAAADLSTDI---GSISMAIIQ---------------------ASTIWMGLSLTIIALAFGLQDTHLWNEATPVLVYVGI 208 (322)
Q Consensus 153 ~~~~g~~~~~---~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (322)
+++.|++... ++...+.++ .+..++.+..+++........... ++..+..+.+.
T Consensus 297 ~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~--~~~~y~~i~~~ 374 (485)
T KOG0569|consen 297 FKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFG--SWLSYLCIAAI 374 (485)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hHHHHHHHHHH
Confidence 9999998763 333333333 333334444444443333332211 23445567788
Q ss_pred HHHHHHHhhcccchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhc
Q 042030 209 MGFSIAFALGMAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTMEWSRTGTFSIFWVICAAAVLFVAFLV 288 (322)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (322)
+.+...++.|.+|+.|.+.+|++|++.|+++.++...++|+.+++..+.++.+.+.-....|+.+.+.+++..++.+.++
T Consensus 375 ~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~~~filF~i~~~~~~i~~~~~l 454 (485)
T KOG0569|consen 375 FLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGPYVFILFVIPLAIFLIYLYRYL 454 (485)
T ss_pred HHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHhC
Confidence 88899999999999999999999999999999999999999999999999999993334889999999999999999999
Q ss_pred cCCCCCChhHHHHHHHhh
Q 042030 289 PETKGRHSKKFKYQLQSI 306 (322)
Q Consensus 289 ~et~~~~~~~~~~~~~~~ 306 (322)
||||+|+..|+.++++++
T Consensus 455 PETkgr~~~eI~~~~~~~ 472 (485)
T KOG0569|consen 455 PETKGRTPYEIIEELEKR 472 (485)
T ss_pred cccCCCCHHHHHHHHHhC
Confidence 999999999998888766
No 2
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=100.00 E-value=4.8e-31 Score=231.92 Aligned_cols=308 Identities=29% Similarity=0.492 Sum_probs=245.7
Q ss_pred CcceeeeeecCCCCchhhHHHHHHHHHHHHHHHHHhhhhh-----hhHHHHHHhhHHHHHHHHHhhccCCChHHHHhcCC
Q 042030 1 MIPIYIAEITPKNIRGAFTATSQFLIVSGMSVMYLVGTIV-----SWRALALIAAVPCLLQVVGLFFIPESPRWLAKIGK 75 (322)
Q Consensus 1 ~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~l~~~~~~~~-----~Wr~~f~~~~~~~~i~~~~~~~lpesp~~l~~~~~ 75 (322)
++|.|++|+.|++.||...+..+....+|.+++..++... +||+.+.+..+++++..+..+++||||||+.++|+
T Consensus 162 ~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g~ 241 (513)
T KOG0254|consen 162 LAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCINYGTSKVYAGWRIPLGLALIPAVILALGMLFLPESPRWLIEKGR 241 (513)
T ss_pred cchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhccCCccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHcCC
Confidence 4689999999999999999999999999999998888777 69999999999999998778999999999999999
Q ss_pred HHHHHHHHHHHhC-CchhhhhhHHHHHHh-hhhcc-cccccchhhhcchhhHHHHHHHHHHHhhhhccchhhhHhcHHHH
Q 042030 76 EKELETTLQCLRG-KTADISMESADIRDC-TQTFE-KDSKAGIFDLFQRRYAYSLSVGVGLMVMQPFVGSAAIAYYASYI 152 (322)
Q Consensus 76 ~~~a~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (322)
.+++++.++++++ .+.+.+.+.++++.. ..+.. ...+..+++++++..+++..+.+.+..++++++++.+.+|.+.+
T Consensus 242 ~~~a~~~l~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~i 321 (513)
T KOG0254|consen 242 LEEAKRSLKRLRGLSPEDVEVELELLKIKLLVEAEVAEGKASWGELFSPKVRKRLIIGLLLQLFQQLTGINYVFYYSTTI 321 (513)
T ss_pred hHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhhhcccccccHHHhcCcchHHHHHHHHHHHHHHHHhCCceEEeehHHH
Confidence 9999999999998 344555555554411 11111 12222477777766788888899999999999999999999999
Q ss_pred HHHcCCCc--hhHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHhccCCC-CCCchhHHHHHHH
Q 042030 153 IAAADLST--DIGSISMAIIQ---------------------ASTIWMGLSLTIIALAFGLQDTHL-WNEATPVLVYVGI 208 (322)
Q Consensus 153 ~~~~g~~~--~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 208 (322)
++..|.+. .....+.++++ .+..++.+++++++........+. ......+..+...
T Consensus 322 f~~~g~~~~~~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (513)
T KOG0254|consen 322 FKSAGLKSDTFLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFL 401 (513)
T ss_pred HHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHH
Confidence 99998764 33334444333 445556666666666555544322 2334567778888
Q ss_pred HHHHHHHhhcccchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhh-cchhHHHHHHHHHHHH-HHHh
Q 042030 209 MGFSIAFALGMAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTMEWSR-TGTFSIFWVICAAAVL-FVAF 286 (322)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~ 286 (322)
+++...++.+++++.|.+.+|.+|.+.|+.+.+++..++++.+.+....+....+... ...|..+++++.+... +.++
T Consensus 402 ~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~~fv~~ 481 (513)
T KOG0254|consen 402 CLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEALGIGGTFGYFGGICLLSLIIFVFF 481 (513)
T ss_pred HHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHheE
Confidence 8889999999999999999999999999999999999999999998888887777443 6778888888877777 7888
Q ss_pred hccCCCCCChhHHHHHHHhhhh
Q 042030 287 LVPETKGRHSKKFKYQLQSINK 308 (322)
Q Consensus 287 ~~~et~~~~~~~~~~~~~~~~~ 308 (322)
++||||+++++|+++.+++...
T Consensus 482 ~~pETkg~sleei~~~~~~~~~ 503 (513)
T KOG0254|consen 482 FVPETKGLTLEEINELFEEGIK 503 (513)
T ss_pred EcccCCCCcHHHHHHHHHcCCc
Confidence 9999999999999887765544
No 3
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=99.97 E-value=1.1e-29 Score=223.27 Aligned_cols=287 Identities=18% Similarity=0.236 Sum_probs=180.4
Q ss_pred cceeeeeecCCCCchhhHHHHHHHHHHHHHHHHHhhhh---------------------------hhhHHHHHHhhHHHH
Q 042030 2 IPIYIAEITPKNIRGAFTATSQFLIVSGMSVMYLVGTI---------------------------VSWRALALIAAVPCL 54 (322)
Q Consensus 2 ~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~l~~~~~~~---------------------------~~Wr~~f~~~~~~~~ 54 (322)
.++|++|++|+++||+..++.+.+..+|.++++.++.. .+||++|.+.+++++
T Consensus 136 ~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~ 215 (502)
T TIGR00887 136 SAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPAL 215 (502)
T ss_pred HHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHH
Confidence 46789999999999999999999999998888766532 269999999999999
Q ss_pred HHHHHhhccCCChHHHHhcCCHH-HHHHHHHHHhCCchh-hhhhHHHHHHhhhhcccccccchhhhcchhh---HHHHHH
Q 042030 55 LQVVGLFFIPESPRWLAKIGKEK-ELETTLQCLRGKTAD-ISMESADIRDCTQTFEKDSKAGIFDLFQRRY---AYSLSV 129 (322)
Q Consensus 55 i~~~~~~~lpesp~~l~~~~~~~-~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~ 129 (322)
+.++.++++||||||+..++|++ ++++.+++..+.+.+ ..++.++.++ + ++..+.+++++++++. .++..+
T Consensus 216 i~~~~~~~lpESpr~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~l~~~~~~~~~~~~~~ 291 (502)
T TIGR00887 216 LALYFRLTIPETPRYTADVAKDVEQAASDMSAVLQVKIEAEPDEVEKAST---A-VEVPKASWSDFFTHFFKWRHGKHLL 291 (502)
T ss_pred HHHHHHHhCCCCHHHHHHhCcchHHHHHHHHHHhccccccCcccccchhc---c-ccchhhhHHHHHHHHhhhHHHHHHH
Confidence 88888899999999999888874 466666666543211 1111111111 1 1112235778776422 222233
Q ss_pred HHHHHhhhhccchhhhHhcHHHHHHHcCCCchhH---------------HHHH---HHHH------------------HH
Q 042030 130 GVGLMVMQPFVGSAAIAYYASYIIAAADLSTDIG---------------SISM---AIIQ------------------AS 173 (322)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~---------------~~~~---~~~~------------------~~ 173 (322)
.....++.+...++....+.|+++++.|++.... ..+. .+.. .+
T Consensus 292 ~~~~~~~~~~~~~y~~~~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~ 371 (502)
T TIGR00887 292 GTAGSWFLLDIAFYGVNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMG 371 (502)
T ss_pred HHHHHHHHHHHHHHccccccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHH
Confidence 2233333333345677788999998888754210 0000 0000 11
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCCCchhHHHHHHHHHHHHHHhhcccchhhhhhccccCccccchhHHHHHHHHHHHHHH
Q 042030 174 TIWMGLSLTIIALAFGLQDTHLWNEATPVLVYVGIMGFSIAFALGMAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWI 253 (322)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~ 253 (322)
.....+++.+++... ... . . ........++..+++.+..+..+.+.+|++|++.|+++.|+.+.++++++++
T Consensus 372 ~~~~~~~~~~l~~~~--~~~---~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~ 443 (502)
T TIGR00887 372 FFILTVLFFVLGFAY--NHL---S-T--HGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAII 443 (502)
T ss_pred HHHHHHHHHHHHHHH--Hhc---c-h--hHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHH
Confidence 111111111111111 000 0 1 1111222222333455667777889999999999999999999999999999
Q ss_pred HHHHHHHHHHhh-----------hcchhHHHHHHHHHHHHHHHhhccCCCCCChhHHHH
Q 042030 254 VTYTFHFTMEWS-----------RTGTFSIFWVICAAAVLFVAFLVPETKGRHSKKFKY 301 (322)
Q Consensus 254 ~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~et~~~~~~~~~~ 301 (322)
+|.+++.+.+.+ ....+.+++++++++.++ ++++|||+++++||+++
T Consensus 444 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~-~~~lpEt~~~~leei~~ 501 (502)
T TIGR00887 444 GQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILF-TLLIPETKGKSLEELSG 501 (502)
T ss_pred HHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHH-heEeccCCCCCHHhhhC
Confidence 999999887721 234677777777777664 46789999999887654
No 4
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=99.97 E-value=3.8e-35 Score=255.33 Aligned_cols=299 Identities=29% Similarity=0.522 Sum_probs=215.4
Q ss_pred CcceeeeeecCCCCchhhHHHHHHHHHHHHHHHHHhhhhh----h---hHHHHHHhhHHHHHHHHHhhccCCChHHHHhc
Q 042030 1 MIPIYIAEITPKNIRGAFTATSQFLIVSGMSVMYLVGTIV----S---WRALALIAAVPCLLQVVGLFFIPESPRWLAKI 73 (322)
Q Consensus 1 ~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~l~~~~~~~~----~---Wr~~f~~~~~~~~i~~~~~~~lpesp~~l~~~ 73 (322)
++++|+.|..|+++||+..++.+.++.+|.+++..++... + ||+.+++..+++++..+..+++||||||+.+|
T Consensus 122 ~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~~ 201 (451)
T PF00083_consen 122 VSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLLRFFLPESPRWLLSK 201 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceeccc
Confidence 3678999999999999999999999999999988776543 4 99999999999998888889999999999999
Q ss_pred CCHHHHHHHHHHHhCCchhhhhhHHHHHHhhhhcccccccchhhhcchhh-HHHHHHHHHHHhhhhccchhhhHhcHHHH
Q 042030 74 GKEKELETTLQCLRGKTADISMESADIRDCTQTFEKDSKAGIFDLFQRRY-AYSLSVGVGLMVMQPFVGSAAIAYYASYI 152 (322)
Q Consensus 74 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (322)
+|.|||++.+++.++++.+.++. ++..++.++.+ +.+.+++++++++. +++....+.+.++.++++++.+.+|.+.+
T Consensus 202 ~~~~~A~~~l~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i 279 (451)
T PF00083_consen 202 GRDEEAEKVLRKLRGKEIEDEEI-EEIKAEKKESQ-ESKASWRDLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSI 279 (451)
T ss_pred ccccccccccccccccccccccc-ccccccccccc-ccceeeeecccccccccccccccccccccccccccccccccccc
Confidence 99999999999976653222222 22221111111 12267788887654 56677777777778788888888999999
Q ss_pred HHHcCCCch-hHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHhccCCCCCCchhHHHHHHHHH
Q 042030 153 IAAADLSTD-IGSISMAIIQ---------------------ASTIWMGLSLTIIALAFGLQDTHLWNEATPVLVYVGIMG 210 (322)
Q Consensus 153 ~~~~g~~~~-~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (322)
++..+.+.. ..+.+.++.. .+...+.++.+.++. ........ +.......+....+
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~i~~~~l 357 (451)
T PF00083_consen 280 FENAGISNSFLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGI-IFFLGVSS-SSWWSILSIVFLAL 357 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccc-ccccccccceeeee
Confidence 888777655 2222222222 111112222222210 00111100 00112333344444
Q ss_pred HHHHHhhcccchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH-hhhcchhHHHHHHHHHHHHHHHhhcc
Q 042030 211 FSIAFALGMAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTME-WSRTGTFSIFWVICAAAVLFVAFLVP 289 (322)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (322)
+..+++.+++++.+.+.+|++|++.|+++.+++..++++++++++.+.+.+.+ .+....+.++++++++..++.++++|
T Consensus 358 ~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lp 437 (451)
T PF00083_consen 358 FFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLP 437 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhHHHHHHHHhheeEEEe
Confidence 55667778888988999999999999999999999999999999999988887 44477788888888888888899999
Q ss_pred CCCCCChhHHHHHH
Q 042030 290 ETKGRHSKKFKYQL 303 (322)
Q Consensus 290 et~~~~~~~~~~~~ 303 (322)
||++++++|+++++
T Consensus 438 ET~g~~l~ei~~~f 451 (451)
T PF00083_consen 438 ETKGKTLEEIQEMF 451 (451)
T ss_pred eCCCCCHHHHHhhC
Confidence 99999999988753
No 5
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=99.96 E-value=1.5e-26 Score=203.02 Aligned_cols=292 Identities=29% Similarity=0.472 Sum_probs=188.6
Q ss_pred cceeeeeecCCCCchhhHHHHHHHHHHHHHHHHHhhhh------------hhhHHHHHHhhHHHHHHHHHhhccCCChHH
Q 042030 2 IPIYIAEITPKNIRGAFTATSQFLIVSGMSVMYLVGTI------------VSWRALALIAAVPCLLQVVGLFFIPESPRW 69 (322)
Q Consensus 2 ~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~l~~~~~~~------------~~Wr~~f~~~~~~~~i~~~~~~~lpesp~~ 69 (322)
++++++|++|+++||+++++.+.+..+|.+++++++.. .+||++|++.++++++..+..+++||+|+|
T Consensus 141 ~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~~s~~~ 220 (479)
T PRK10077 141 SPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRY 220 (479)
T ss_pred HHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHHHcCCCCcHH
Confidence 35688999999999999999999999999988776532 389999999988888877777889999999
Q ss_pred HHhcCCHHHHHHHHHHHhCCchhhhhhHHHHHHhhhhcccccccchhhhcchhhHHHHHHHHHHHhhhhccchhhhHhcH
Q 042030 70 LAKIGKEKELETTLQCLRGKTADISMESADIRDCTQTFEKDSKAGIFDLFQRRYAYSLSVGVGLMVMQPFVGSAAIAYYA 149 (322)
Q Consensus 70 l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (322)
+..+++.+++++..++..+.+. .++..++.++..+.++. ..+..+. .........+....+.+..+++...++.
T Consensus 221 l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (479)
T PRK10077 221 LMSRGKQEQAEGILRKIMGNTL-ATQALQEIKHSLDHGRK----TGGKLLM-FGVGVIVIGVMLSVFQQFVGINVVLYYA 294 (479)
T ss_pred HHHcCCHHHHHHHHHHHcCChh-HHHHHHHHHHHHHHhhh----hhhhhcc-hhHHHHHHHHHHHHHHHHhChhHHHHHH
Confidence 9888888888877777654432 11222222211111000 0111111 1112222223334445555667778888
Q ss_pred HHHHHHcCCCchhHHHH---HHHHH---------------------HHHHHHHHHHHHHHHHHHhccCCCCCCchhHHHH
Q 042030 150 SYIIAAADLSTDIGSIS---MAIIQ---------------------ASTIWMGLSLTIIALAFGLQDTHLWNEATPVLVY 205 (322)
Q Consensus 150 ~~~~~~~g~~~~~~~~~---~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (322)
|.+.++.|.+....... .++.. .+.....++.+.++... .. . .......
T Consensus 295 p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~--~~-~----~~~~~~~ 367 (479)
T PRK10077 295 PEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAF--YT-Q----APGIVAL 367 (479)
T ss_pred HHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHH--hc-C----cccHHHH
Confidence 99988888765422211 11111 11111111111111111 11 0 1112233
Q ss_pred HHHHHHHHHHhhcccchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHH-------HhhhcchhHHHHHHHH
Q 042030 206 VGIMGFSIAFALGMAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTM-------EWSRTGTFSIFWVICA 278 (322)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~ 278 (322)
..++++..++..++.+..+.+++|.+|++.|+++.|+.+..+++++++++.+++.+. ..+....+.+++++++
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (479)
T PRK10077 368 LSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGV 447 (479)
T ss_pred HHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHH
Confidence 344444555555566777899999999999999999999999999999998887665 2555667888888888
Q ss_pred HHHHHHHhhccCCCCCChhHHHHHHHhh
Q 042030 279 AAVLFVAFLVPETKGRHSKKFKYQLQSI 306 (322)
Q Consensus 279 ~~~~~~~~~~~et~~~~~~~~~~~~~~~ 306 (322)
+++++.+.+.||+|+++++|.++++++.
T Consensus 448 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~ 475 (479)
T PRK10077 448 LAALFMWKFVPETKGKTLEEMEALWEPE 475 (479)
T ss_pred HHHHHHHhccccCCCCCHHHHHHHHhhc
Confidence 8877777789999999998877766544
No 6
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=99.96 E-value=5.1e-27 Score=210.19 Aligned_cols=288 Identities=15% Similarity=0.189 Sum_probs=183.6
Q ss_pred cceeeeeecCCCCchhhHHHHHHHHHHHHHHHHHhhhh-----------------hhhHHHHHHhhHHHHHHHHHhhccC
Q 042030 2 IPIYIAEITPKNIRGAFTATSQFLIVSGMSVMYLVGTI-----------------VSWRALALIAAVPCLLQVVGLFFIP 64 (322)
Q Consensus 2 ~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~l~~~~~~~-----------------~~Wr~~f~~~~~~~~i~~~~~~~lp 64 (322)
++++++|++|+++||+..++++.++.+|.++++.++.. .+||+++++.++++++.++..+++|
T Consensus 276 ~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lP 355 (742)
T TIGR01299 276 VFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMP 355 (742)
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhccccccccccHHHHHHHHHHHHHHHHHHHHHcC
Confidence 46788999999999999999999999999988875532 2699999999999888888889999
Q ss_pred CChHHHHhcCCHHHHHHHHHHHhCCchhh---hh-h--HHHHHHhhhh------cccc-----------------cccch
Q 042030 65 ESPRWLAKIGKEKELETTLQCLRGKTADI---SM-E--SADIRDCTQT------FEKD-----------------SKAGI 115 (322)
Q Consensus 65 esp~~l~~~~~~~~a~~~~~~~~~~~~~~---~~-~--~~~~~~~~~~------~~~~-----------------~~~~~ 115 (322)
|||+|+..++|.+++.+.++++++.|... +. . .++++...+. ++.. ...++
T Consensus 356 ESPrwL~~~gr~~eA~~iL~~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (742)
T TIGR01299 356 ESPRFFLENGKHDEAWMILKLIHDTNMRAKGHPEKVFSVNHIKTIHQEDELIEIESDTGTWYQRCFVRALSEGGGIWGNF 435 (742)
T ss_pred CCHHHHHHCCCHHHHHHHHHHHhcCCCCCcCchhHHHHHHHHHHhhhhhhhhcccccccchhhcchhhhhhhhhhHHHHH
Confidence 99999999999999999999998765321 11 0 0111110000 0000 00145
Q ss_pred hhhcchhhHHHHHHHHHHHhhhhccchhhhHhcHHHHHHHc---------------------------------------
Q 042030 116 FDLFQRRYAYSLSVGVGLMVMQPFVGSAAIAYYASYIIAAA--------------------------------------- 156 (322)
Q Consensus 116 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------- 156 (322)
+++|++++++++++++..+++ ...+++++..|.|.+++..
T Consensus 436 ~~lf~~~~~~~tl~l~~~wf~-~~~~yygl~~w~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (742)
T TIGR01299 436 LRCFNPEVREITIKLMGVWFT-LSFGYYGLSVWFPDMIKHLQADDYAALTKNFPGDKVAHFSFNFTLENQIHRGGEYDND 514 (742)
T ss_pred HHHcCccHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchhccccccchhhhhccccccccc
Confidence 668877777777776666554 4457999999999886442
Q ss_pred ---CC-----C----------------------------------------------------------------c----
Q 042030 157 ---DL-----S----------------------------------------------------------------T---- 160 (322)
Q Consensus 157 ---g~-----~----------------------------------------------------------------~---- 160 (322)
|+ . .
T Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~ 594 (742)
T TIGR01299 515 KFIGLKFKSVSFEDSLFEECTFDDVTSSNTFFKNCTFIDTLFENTDFEEYKFIDSEFQNCSFLHNKEGCPIDFDGDDEGA 594 (742)
T ss_pred hhhcccccccccccccccccceeeccccchhhhccchhhhhccccchhhhhhhhhhhhhccccccCCccCccCCccchhH
Confidence 00 0 0
Q ss_pred ---hhHHHHHHHHH-------------HHHHH-HHHHHHHHHHHHHhccCCCCCCchhHHHHHHHHHHHHHHhhcccchh
Q 042030 161 ---DIGSISMAIIQ-------------ASTIW-MGLSLTIIALAFGLQDTHLWNEATPVLVYVGIMGFSIAFALGMAGLP 223 (322)
Q Consensus 161 ---~~~~~~~~~~~-------------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (322)
.....+.++.. ++... +.++.++.++........ ......++..+++ .++..+..+..
T Consensus 595 ~~~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~----~s~~~ll~~~~l~-g~~~~~~~~~~ 669 (742)
T TIGR01299 595 YMIYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFG----NSESAMIALLCLF-GGLSIAAWNAL 669 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH----ccHHHHHHHHHHH-HHHHHHHHHHH
Confidence 00011110111 11110 111111111111110000 0112222222222 23333445667
Q ss_pred hhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhccCCCCCCh
Q 042030 224 SVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTMEWSRTGTFSIFWVICAAAVLFVAFLVPETKGRHS 296 (322)
Q Consensus 224 ~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~et~~~~~ 296 (322)
+.+++|++|++.|++++|+.+..+++|++++|++.+.+.+.+...++++.+++.++++++.+ ++|||+++.+
T Consensus 670 ~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~~~~~pf~i~a~~lll~~ll~~-~LPET~~~~l 741 (742)
T TIGR01299 670 DVLTVELYPSDKRATAFGFLNALCKAAAVLGILIFGSFVGITKAAPILFASAALACGGLLAL-KLPDTRGQVL 741 (742)
T ss_pred HHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-hCCCCccccc
Confidence 89999999999999999999999999999999999988776556677777777766666544 5699998754
No 7
>TIGR00898 2A0119 cation transport protein.
Probab=99.95 E-value=2e-25 Score=197.03 Aligned_cols=286 Identities=17% Similarity=0.179 Sum_probs=180.0
Q ss_pred cceeeeeecCCCCchhhHHHHHHHHHHHHHHHHHhhhhh-hhHHHHHHhhHHHHHHHHHhhccCCChHHHHhcCCHHHHH
Q 042030 2 IPIYIAEITPKNIRGAFTATSQFLIVSGMSVMYLVGTIV-SWRALALIAAVPCLLQVVGLFFIPESPRWLAKIGKEKELE 80 (322)
Q Consensus 2 ~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~l~~~~~~~~-~Wr~~f~~~~~~~~i~~~~~~~lpesp~~l~~~~~~~~a~ 80 (322)
..+++.|++|+++|++..++.+.++.+|.++++.++..+ +||+.|++.+++.++..+..+++||||+|+..+++.++++
T Consensus 201 ~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~a~ 280 (505)
T TIGR00898 201 AVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPDWRWLQLAVSLPTFLFFLLSWFVPESPRWLISQGRIEEAL 280 (505)
T ss_pred HHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHCCCHHHHH
Confidence 356789999999999999999999999999999988766 7999999999998888777788999999999999999999
Q ss_pred HHHHHHhCCchhhh-hhHHHHHHhhhhcccccccchhhhcchhhHHHHHHHHHHHhhhhccchhhhHhcHHHHHHHcCCC
Q 042030 81 TTLQCLRGKTADIS-MESADIRDCTQTFEKDSKAGIFDLFQRRYAYSLSVGVGLMVMQPFVGSAAIAYYASYIIAAADLS 159 (322)
Q Consensus 81 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 159 (322)
+.+++..+.+.... ++..+.+...+.+++.++.+++++++++..+...+.....++.....++....+. ...+.+
T Consensus 281 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 356 (505)
T TIGR00898 281 KILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFTTAFSYYGLVLDL----GNLGGN 356 (505)
T ss_pred HHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHhccc----cccCCC
Confidence 98888765442211 1111111111111112245778888877766666555444443322233333332 233433
Q ss_pred chhHHHHHHHHH-------------HHH-HHHHHHHHHHHHHH--HhccCCCCCCchhHHHHHHHHHHHHHHhhcccchh
Q 042030 160 TDIGSISMAIIQ-------------AST-IWMGLSLTIIALAF--GLQDTHLWNEATPVLVYVGIMGFSIAFALGMAGLP 223 (322)
Q Consensus 160 ~~~~~~~~~~~~-------------~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (322)
......+.++.. .+. ....+..++.++.. ...... ...+......++ ..+...+..+..
T Consensus 357 ~~~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~-~~~~~~~~~~~~ 431 (505)
T TIGR00898 357 IYLDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPV----DLYFLRTALAVL-GKFGITSAFQMV 431 (505)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCC----CchHHHHHHHHH-HHHHHHHHHHHH
Confidence 332222222221 000 00111111111111 111100 111222222222 222222334556
Q ss_pred hhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhccCCCCCChhH
Q 042030 224 SVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTMEWSRTGTFSIFWVICAAAVLFVAFLVPETKGRHSKK 298 (322)
Q Consensus 224 ~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~et~~~~~~~ 298 (322)
+.+.+|.+|++.|+++.|+.+..+++|++++|.+.+ +.+.+...++.+++++.+++++.. +++|||++++++|
T Consensus 432 ~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~lpet~~~~l~~ 504 (505)
T TIGR00898 432 YLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-LGEKWLFLPLVLFGGLALLAGILT-LFLPETKGVPLPE 504 (505)
T ss_pred HHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-HHHHHHhhHHHHHHHHHHHHHHHH-HcCcCCCCCCCCC
Confidence 889999999999999999999999999999999998 666666777888888777776654 5689999987754
No 8
>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]
Probab=99.94 E-value=5.7e-25 Score=174.50 Aligned_cols=284 Identities=18% Similarity=0.197 Sum_probs=185.6
Q ss_pred eeeeecCCCCchhhHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHhhHHHHHHHHHhhccCCChHHHHhcCCHHHHH
Q 042030 5 YIAEITPKNIRGAFTATSQFLIVSGMSVMYLVGTIV----SWRALALIAAVPCLLQVVGLFFIPESPRWLAKIGKEKELE 80 (322)
Q Consensus 5 ~i~e~~~~~~rg~~~~~~~~~~~~G~~l~~~~~~~~----~Wr~~f~~~~~~~~i~~~~~~~lpesp~~l~~~~~~~~a~ 80 (322)
+-.|..|..+|+..+-.. ..|.+|.+....+++.. ||||..+..+.|..+...+.+++||||||+..+|++++|.
T Consensus 189 ~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~gwr~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~~~kAl 267 (528)
T KOG0253|consen 189 IYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNFGWRYLLFTSSTPLMFAARFLVWVYESPRFYLAKGDDYKAL 267 (528)
T ss_pred HHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHhhcccCcchhhhcCChHHHH
Confidence 345788889999887777 89999999888887655 9999999988998888899999999999999999999999
Q ss_pred HHHHHHhCCchh----------hhhhHHH----HHHhhhhcccccccchhhhcchhhHHHHHHHHHHHhhhhccchhhhH
Q 042030 81 TTLQCLRGKTAD----------ISMESAD----IRDCTQTFEKDSKAGIFDLFQRRYAYSLSVGVGLMVMQPFVGSAAIA 146 (322)
Q Consensus 81 ~~~~~~~~~~~~----------~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (322)
..++++++.|+. .++++++ ..+...+..+.......+++.++.++.++.....++. +...+|+..
T Consensus 268 etL~kiArmNg~qlplgvl~~s~~~~~e~e~~~~~~~~~~a~ke~rg~~~nLlsp~lrkttlllw~iwfg-nafsyyg~V 346 (528)
T KOG0253|consen 268 ETLHKIARMNGKQLPLGVLESSAIDRQEQEESDLDDSKSSAAKEVRGGTTNLLSPKLRKTTLLLWRIWFG-NAFSYYGSV 346 (528)
T ss_pred HHHHHHHHhcCCCCCcceeeeehhhhhhhhhhchhhhhhccccccccchHhhcChHHHHHHHHHHHHHHh-hHHHHHHHH
Confidence 999999876632 1111111 1111111223344567788876666666665554444 333455555
Q ss_pred hcHHHHHHHcC---CCch--------------------hHHHHHHHHH-------------HHH-HHHHHHHHHHHHHHH
Q 042030 147 YYASYIIAAAD---LSTD--------------------IGSISMAIIQ-------------AST-IWMGLSLTIIALAFG 189 (322)
Q Consensus 147 ~~~~~~~~~~g---~~~~--------------------~~~~~~~~~~-------------~~~-~~~~~~~~~~~~~~~ 189 (322)
.....+.+.-. .... .-.++.+... .+. ..++++.+++++...
T Consensus 347 Llttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~iverlGRKkTMal~l~~f~iflf 426 (528)
T KOG0253|consen 347 LLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLF 426 (528)
T ss_pred HHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence 55544443211 1100 0111111111 111 123333333333333
Q ss_pred hccCCCCCCchhHHHHHHHHHHHHHHhhcccchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcch
Q 042030 190 LQDTHLWNEATPVLVYVGIMGFSIAFALGMAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTMEWSRTGT 269 (322)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 269 (322)
...... .........+. .-.|..+...+.|+|.+|+||+..|+++.|.+...+++|+++.|++. ...+.....+
T Consensus 427 ll~~c~----~rn~~tvllf~-arafisg~fqvaYvYtPEVyPTavRatgvGtcSsmaRIggI~~p~iA-~~~e~s~sl~ 500 (528)
T KOG0253|consen 427 LLTTCK----TRNAYTVLLFT-ARAFISGAFQVAYVYTPEVYPTAVRATGVGTCSSMARIGGIFSPVIA-MRAELSTSLP 500 (528)
T ss_pred HHHHhc----CcchhHHHHHH-HHHHHhchheEEEEecCcccchhhhhcchhhhhhHHhhhhhhhhHHH-HHhccceeeh
Confidence 222211 11222222222 33344455566699999999999999999999999999999999998 4444666778
Q ss_pred hHHHHHHHHHHHHHHHhhccCCCCCCh
Q 042030 270 FSIFWVICAAAVLFVAFLVPETKGRHS 296 (322)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~et~~~~~ 296 (322)
..+++++++++++..+++--|||+|++
T Consensus 501 i~vy~~~~ilagIavcffPiEtkGR~l 527 (528)
T KOG0253|consen 501 IFVYGALFILAGIAVCFFPIETKGRSL 527 (528)
T ss_pred HHHHHHHHHHHHHHheeeeeccCCCCC
Confidence 889999999999988888889999875
No 9
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=99.92 E-value=4.6e-23 Score=180.90 Aligned_cols=294 Identities=31% Similarity=0.467 Sum_probs=186.9
Q ss_pred ceeeeeecCCCCchhhHHHHHHHHHHHHHHHHHhh---hh----hhhHHHHHHhhHHHHHHHHHhhccCCChHHHHhcCC
Q 042030 3 PIYIAEITPKNIRGAFTATSQFLIVSGMSVMYLVG---TI----VSWRALALIAAVPCLLQVVGLFFIPESPRWLAKIGK 75 (322)
Q Consensus 3 ~~~i~e~~~~~~rg~~~~~~~~~~~~G~~l~~~~~---~~----~~Wr~~f~~~~~~~~i~~~~~~~lpesp~~l~~~~~ 75 (322)
.++++|++|+++|+++.++.+.+..+|..+++.++ .. .+||+.|++.++..++..+..+++||+|+++..+++
T Consensus 149 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 228 (481)
T TIGR00879 149 PMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGR 228 (481)
T ss_pred HHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHcCC
Confidence 46789999999999999999999999999999988 33 389999999777777777777889999999888877
Q ss_pred HHHHHHHHHHHhCCchhhhhhHH---HHHHhhhhcccccccchhhhcchh--hHHHHHHHHHHHhhhhccchhhhHhcHH
Q 042030 76 EKELETTLQCLRGKTADISMESA---DIRDCTQTFEKDSKAGIFDLFQRR--YAYSLSVGVGLMVMQPFVGSAAIAYYAS 150 (322)
Q Consensus 76 ~~~a~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (322)
.+++++..++....+....+..+ ..+...+.+.+..+..+.++++.. ..++......+.++......+...++.|
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (481)
T TIGR00879 229 VEEARKSLARLRGTSGEDKELLDELELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSP 308 (481)
T ss_pred hHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHhhccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHH
Confidence 77766666555433211111111 111111111111111233333321 2344444445555545445566788889
Q ss_pred HHHHHcCCCchhHHHHHHHHH------------------------HHHHHHHHHHHHHHHHHHhccCCCCCCchhHHHHH
Q 042030 151 YIIAAADLSTDIGSISMAIIQ------------------------ASTIWMGLSLTIIALAFGLQDTHLWNEATPVLVYV 206 (322)
Q Consensus 151 ~~~~~~g~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (322)
.+.++.|++............ .+.....++.+.++......... .+.......+.
T Consensus 309 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 387 (481)
T TIGR00879 309 TIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTG-SSKSSGNVAIV 387 (481)
T ss_pred HHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCC-cccchhHHHHH
Confidence 998888887743322222211 01111111111111100111100 00001233333
Q ss_pred HHHHHHHHHhhcccchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH-hhhcchhHHHHHHHHHHHHHHH
Q 042030 207 GIMGFSIAFALGMAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTME-WSRTGTFSIFWVICAAAVLFVA 285 (322)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 285 (322)
...++..+++.+..+....+..|.+|++.|+++.++.+...++|++++|.+.+.+.+ .++...|.+.++++++++++.+
T Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~ 467 (481)
T TIGR00879 388 FILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVY 467 (481)
T ss_pred HHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHHHh
Confidence 444455666666677778888999999999999999999999999999999998887 6777788888888888888777
Q ss_pred hhccCCCCCChh
Q 042030 286 FLVPETKGRHSK 297 (322)
Q Consensus 286 ~~~~et~~~~~~ 297 (322)
++.||+++++.+
T Consensus 468 ~~~~~~~~~~~~ 479 (481)
T TIGR00879 468 FFLPETKGRTLE 479 (481)
T ss_pred eecccCCCCChh
Confidence 788998877654
No 10
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=99.92 E-value=4.4e-22 Score=176.18 Aligned_cols=297 Identities=16% Similarity=0.108 Sum_probs=178.3
Q ss_pred cceeeeeecCCCCchhhHHHHHHHHHHHHHHHHHhhhhh-hhHHHHHHhhHHHHHHHHHhhccCCChHHHHhcCCHHHHH
Q 042030 2 IPIYIAEITPKNIRGAFTATSQFLIVSGMSVMYLVGTIV-SWRALALIAAVPCLLQVVGLFFIPESPRWLAKIGKEKELE 80 (322)
Q Consensus 2 ~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~l~~~~~~~~-~Wr~~f~~~~~~~~i~~~~~~~lpesp~~l~~~~~~~~a~ 80 (322)
+.++++|+.++++|+.+.++....+..|.+..+..++.. +|||.+++..+++++.++++++.||||||+..+++.+++.
T Consensus 192 ~~~~~~E~~~~~~R~~~~~~~~~~~~~~~~~~~~~a~~~~~Wr~~~~~~~~~~~~~~~~~~l~~Es~rwl~~~g~~~~a~ 271 (521)
T KOG0255|consen 192 GFGLVAEIVSPKQRGLALTLGGFFFVGGLMLPAGAAYITRDWRWLFWIISIPSGLFLLLWFLPPESPRWLLSKGRIDEAI 271 (521)
T ss_pred hHhhheeecCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHccCcChHHHHHcCchHHHH
Confidence 567889999999999999995566666665555555555 7999999999999988888777889999999999999999
Q ss_pred HHHHHHhCCc---hhhhhhHHHH-HHhh-hhcccccccchhhhcchhhHHHHHHHHHHHhhhhccchhhhHhcHHHHHHH
Q 042030 81 TTLQCLRGKT---ADISMESADI-RDCT-QTFEKDSKAGIFDLFQRRYAYSLSVGVGLMVMQPFVGSAAIAYYASYIIAA 155 (322)
Q Consensus 81 ~~~~~~~~~~---~~~~~~~~~~-~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (322)
+.+++..+.| .+.++..++. .... .....+++..+.++++.+..++......+.++.....+++. +.....
T Consensus 272 ~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~y~gl----~~~~~~ 347 (521)
T KOG0255|consen 272 KILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDLFRTPRLRYRTLYLLFIWFVFSLVYYGL----SLNVSG 347 (521)
T ss_pred HHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhhhcCHHHHHHHHHHHHHHHHHhHHHHhh----hhhhhh
Confidence 9999987654 1111111111 1111 11122233567888887644433333333332111112222 222233
Q ss_pred cCCCchhHHHHHHHHH-------------H-HHHHHHHHHHHHHHHHHhccCCCCCCchhHHHHHHHHHHHHHHhhcccc
Q 042030 156 ADLSTDIGSISMAIIQ-------------A-STIWMGLSLTIIALAFGLQDTHLWNEATPVLVYVGIMGFSIAFALGMAG 221 (322)
Q Consensus 156 ~g~~~~~~~~~~~~~~-------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (322)
.|.+......+.+... . .........++.++.............. +.......+...+.+.++..
T Consensus 348 lg~~~~~~~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 426 (521)
T KOG0255|consen 348 LGGNIYLNFTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGG-WLHWILPLLGKFFIGSAFNL 426 (521)
T ss_pred cCchHHHHHHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccchh-HHHHHHHHHHHHHHHHHHHH
Confidence 3444443333333322 1 1111111111111111111111000010 12222222223333334444
Q ss_pred hhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhccCCCCCChhHHHH
Q 042030 222 LPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTMEWSRTGTFSIFWVICAAAVLFVAFLVPETKGRHSKKFKY 301 (322)
Q Consensus 222 ~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~et~~~~~~~~~~ 301 (322)
. +.+.+|++|+..|..+.+.+...++++++++|.+............+..++....+.+.+..+++|||+++.+.+..+
T Consensus 427 ~-~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lpet~~~~l~~t~~ 505 (521)
T KOG0255|consen 427 I-FLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQMFPLLGLILFGWLALLLGLLSLLLLPETKGKPLPGTLL 505 (521)
T ss_pred H-HHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHhcCcccCCCCCchhHH
Confidence 4 899999999999999999999999999999999986555544444444467777777777778899999999876555
Q ss_pred HHH
Q 042030 302 QLQ 304 (322)
Q Consensus 302 ~~~ 304 (322)
+.+
T Consensus 506 ~~~ 508 (521)
T KOG0255|consen 506 DAE 508 (521)
T ss_pred HHH
Confidence 444
No 11
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=99.90 E-value=2.4e-21 Score=169.97 Aligned_cols=262 Identities=17% Similarity=0.212 Sum_probs=149.1
Q ss_pred ceeeeeecCCCCchhhHHHHHHHHHHHHHHHHHhhh------------hhhhHHHHHHhhHHHHHHHHHhhccCCChHHH
Q 042030 3 PIYIAEITPKNIRGAFTATSQFLIVSGMSVMYLVGT------------IVSWRALALIAAVPCLLQVVGLFFIPESPRWL 70 (322)
Q Consensus 3 ~~~i~e~~~~~~rg~~~~~~~~~~~~G~~l~~~~~~------------~~~Wr~~f~~~~~~~~i~~~~~~~lpesp~~l 70 (322)
.++++|++|+++||+..++.+.+..+|..+++.+.. ..|||++|++.++++++.++++.++||||+|.
T Consensus 140 ~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~~~~~~~~~esp~~~ 219 (490)
T PRK10642 140 SIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGIIGLYLRHALEETPAFQ 219 (490)
T ss_pred HHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHHHHHHHHcCCCChhHH
Confidence 467899999999999999999888888887765432 24899999998877776666677899999986
Q ss_pred HhcCCHHHHHHHHHHHhCCchhhhhhHHHHHHhhhhcccccccchhhhcchhhHHHHHHHHHHHhhhhccchhhhHhcHH
Q 042030 71 AKIGKEKELETTLQCLRGKTADISMESADIRDCTQTFEKDSKAGIFDLFQRRYAYSLSVGVGLMVMQPFVGSAAIAYYAS 150 (322)
Q Consensus 71 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (322)
..+++.++..+ + ..++.++.++++++++ +++.........++ ....++.+..|.|
T Consensus 220 ~~~~~~~~~~~-------~----------------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~p 274 (490)
T PRK10642 220 QHVDKLEQGDR-------E----------------GLQDGPKVSFKEIATK-HWRSLLTCIGLVIA-TNVTYYMLLTYMP 274 (490)
T ss_pred HHHHhhhhhcc-------c----------------cccccccCCHHHHHHH-hHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 43322111000 0 0001123356666654 33333333322222 2335677788899
Q ss_pred HHHHH-cCCCchhHHHHHHHHH----------------HHHH-HHHHHH---HHHHHH-HHhccCCCCCCchhHHHHHHH
Q 042030 151 YIIAA-ADLSTDIGSISMAIIQ----------------ASTI-WMGLSL---TIIALA-FGLQDTHLWNEATPVLVYVGI 208 (322)
Q Consensus 151 ~~~~~-~g~~~~~~~~~~~~~~----------------~~~~-~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 208 (322)
.++++ .|++............ .+.. .+..+. .+.+.. ...... ......+...
T Consensus 275 ~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 349 (490)
T PRK10642 275 SYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINS-----NVIGLIFAGL 349 (490)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhC-----CCHHHHHHHH
Confidence 98865 4777653332222111 1100 011111 111111 111110 1112222222
Q ss_pred HHHHHHHhhcccchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH-hh-hcchhHHHHHHHHHHHHHHHh
Q 042030 209 MGFSIAFALGMAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTME-WS-RTGTFSIFWVICAAAVLFVAF 286 (322)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~ 286 (322)
++...+.+.+ .+....+.+|.+|++.|+++.|+.+..+++++.++|.+.+.+.+ .+ +..++....+.++++.+ ..+
T Consensus 350 ~~~g~~~~~~-~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~-~~~ 427 (490)
T PRK10642 350 LMLAVILNCF-TGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLI-TGV 427 (490)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH-HHH
Confidence 2222222222 23346678899999999999999888888889999999998877 22 23344444444444444 344
Q ss_pred hccCCCCCCh
Q 042030 287 LVPETKGRHS 296 (322)
Q Consensus 287 ~~~et~~~~~ 296 (322)
++||++++..
T Consensus 428 ~~pes~~~~~ 437 (490)
T PRK10642 428 TMKETANRPL 437 (490)
T ss_pred HhccccCCCC
Confidence 5699866544
No 12
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]
Probab=99.88 E-value=2.2e-22 Score=164.43 Aligned_cols=290 Identities=18% Similarity=0.188 Sum_probs=183.1
Q ss_pred cceeeeeecCCCCchhhHHHHHHHHHHHHHHHHHhhhhh-------------------hhHHHHHHhhHHHHHHHHHhhc
Q 042030 2 IPIYIAEITPKNIRGAFTATSQFLIVSGMSVMYLVGTIV-------------------SWRALALIAAVPCLLQVVGLFF 62 (322)
Q Consensus 2 ~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~l~~~~~~~~-------------------~Wr~~f~~~~~~~~i~~~~~~~ 62 (322)
+.+..+|.+..++||...+.......+|.+.|.+++..+ -||..|.++++|++..+..++.
T Consensus 165 SAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~ 244 (538)
T KOG0252|consen 165 SATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRLK 244 (538)
T ss_pred hHHHhhhhhhhccccceeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 456789999999999999999888888888877766443 2999999999999999999999
Q ss_pred cCCChHHHHhcC-CHHHHHHHHHHHhCCchhhhhhHHHHHHhhhhccccccc---chhhhcchhhHHHHHHHHHHHhhhh
Q 042030 63 IPESPRWLAKIG-KEKELETTLQCLRGKTADISMESADIRDCTQTFEKDSKA---GIFDLFQRRYAYSLSVGVGLMVMQP 138 (322)
Q Consensus 63 lpesp~~l~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~ 138 (322)
+|||+||-.... +.+.+. ++..+.. ..++++.++. +...+..+. .+...+..++.++++. ....|+..
T Consensus 245 M~Et~~Y~al~~~~~~~a~---~d~~k~~---~~~~~~~~~~-~~~~~~~~~~~~~F~~~f~~~hg~~Llg-t~~~WFll 316 (538)
T KOG0252|consen 245 MPETARYTALVSKKLKQAA---GDMKKVL---SVDIEAESTA-ESDVPPPSNSFGLFSRLFLRWHGKHLLG-TAGTWFLL 316 (538)
T ss_pred CCcchhHHHHhhcCHhhhh---hcccccc---ccccchhhcc-ccCCCCcccccchHHHHHHHHHHHHHHH-HHHHHHhh
Confidence 999999863222 222222 2111111 1111111110 111111111 1333333344344444 44445544
Q ss_pred ccchhhhHhcHHHHHHHcCCCchh-----------HHHHHHHHH-------------------HHHHHHHHHHHHHHHHH
Q 042030 139 FVGSAAIAYYASYIIAAADLSTDI-----------GSISMAIIQ-------------------ASTIWMGLSLTIIALAF 188 (322)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~g~~~~~-----------~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~ 188 (322)
=..+|....+...+++..|..+.. .+.+..+.. +...+..+..+ +....
T Consensus 317 Diafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i-~~~~~ 395 (538)
T KOG0252|consen 317 DIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTI-FFFVI 395 (538)
T ss_pred hhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHhhHHHHHH-HHHHH
Confidence 456888899999999987765441 222222222 11112221111 11111
Q ss_pred HhccCCCCCCchhHHHHHHHHHHHHHHhhcccchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH-----
Q 042030 189 GLQDTHLWNEATPVLVYVGIMGFSIAFALGMAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTME----- 263 (322)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~----- 263 (322)
..+..+. ......+++..+...+...|+.....++.+|.||++.|+++.|++.+.+.+|++++...+.++.+
T Consensus 396 ~~~y~~~---~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~ 472 (538)
T KOG0252|consen 396 AGPYNQL---ENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPP 472 (538)
T ss_pred cCCcccc---cccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhccCCc
Confidence 1222211 11222233333445566778888889999999999999999999999999999999999998887
Q ss_pred -hhhcchhHHHHHHHHHHHHHHHhhccCCCCCChhHHHHHHH
Q 042030 264 -WSRTGTFSIFWVICAAAVLFVAFLVPETKGRHSKKFKYQLQ 304 (322)
Q Consensus 264 -~~~~~~~~~~~~~~~~~~~~~~~~~~et~~~~~~~~~~~~~ 304 (322)
.+...++++++++++++.++.+ ++|||++|+++|++++.+
T Consensus 473 ~~g~~~v~~i~~~~~~~gi~~T~-l~pEtk~~~leei~~e~~ 513 (538)
T KOG0252|consen 473 NIGVRNVFIILAGCMLLGILFTL-LIPETKGKSLEEISNEEE 513 (538)
T ss_pred cccchHHHHHHHHHHHHhHheeE-EeecccccCHHHhcChhh
Confidence 3456778888888888877554 578999999999866554
No 13
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=99.85 E-value=1.3e-19 Score=152.58 Aligned_cols=239 Identities=12% Similarity=0.066 Sum_probs=148.4
Q ss_pred eeeeeecCCCCchhhHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHhhHHHHHHH-HHhhccCCChHHHHhcCCHHH
Q 042030 4 IYIAEITPKNIRGAFTATSQFLIVSGMSVMYLVGTIV----SWRALALIAAVPCLLQV-VGLFFIPESPRWLAKIGKEKE 78 (322)
Q Consensus 4 ~~i~e~~~~~~rg~~~~~~~~~~~~G~~l~~~~~~~~----~Wr~~f~~~~~~~~i~~-~~~~~lpesp~~l~~~~~~~~ 78 (322)
..++|++|+++|+++.++.+.+..+|.++++.++..+ |||+.|++.++++++.. +.++++||+|++. ++..+
T Consensus 101 ~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~~lp~~p~~~---~~~~~ 177 (368)
T TIGR00903 101 APAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILVLAALPALPFQA---AEGFG 177 (368)
T ss_pred HHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcCCCCCCC---CCCcc
Confidence 3457999999999999999999999999998887766 99999999777776654 4567899998742 11000
Q ss_pred HHHHHHHHhCCchhhhhhHHHHHHhhhhcccccccchhhhcchhhHHHHHHHHHHHhhhhccchhhhHhcHHHHHHHcCC
Q 042030 79 LETTLQCLRGKTADISMESADIRDCTQTFEKDSKAGIFDLFQRRYAYSLSVGVGLMVMQPFVGSAAIAYYASYIIAAADL 158 (322)
Q Consensus 79 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 158 (322)
.+ + ...+++++++++..+..... .++....++.+..|.|+++++.|+
T Consensus 178 --------------~~----~-----------~~~~~~~ll~~~~~~~~~~~----~~~~~~~~~~~~~wlp~~L~~~g~ 224 (368)
T TIGR00903 178 --------------FK----D-----------AVKEFGALAGRKDLWIIGAI----LGFGVALFDNLAIWLEAALRPAGL 224 (368)
T ss_pred --------------hH----H-----------HHHHHHHHHcChhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHCCC
Confidence 00 0 00135677776655544443 233334567888999999988787
Q ss_pred CchhHHHHHHHHH-------------H---HH--HHHHHHHHHHHHHHHhccCCCCCCchhHHHHHHHHHHHHHHhhccc
Q 042030 159 STDIGSISMAIIQ-------------A---ST--IWMGLSLTIIALAFGLQDTHLWNEATPVLVYVGIMGFSIAFALGMA 220 (322)
Q Consensus 159 ~~~~~~~~~~~~~-------------~---~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (322)
+.. .+....+.. . .. .......++.+......... ......+....+ ..++.....
T Consensus 225 s~~-~~~~~~l~~~~g~~g~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~l-~~~~~~~~~ 298 (368)
T TIGR00903 225 EDI-AGDAVALAILAGLIGVAVIPDRVARAGLRSIYIRAAALLIAAFFLALAFE----LNRLALFAFIGI-AGLLMLPAY 298 (368)
T ss_pred ChH-HHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHc----cccHHHHHHHHH-HHHhhhhhH
Confidence 654 222222211 1 00 00111111111111111100 011222222222 222333344
Q ss_pred chhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHH
Q 042030 221 GLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTMEWSRTGTFSIFWVICAAAVLFVA 285 (322)
Q Consensus 221 ~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (322)
+..+.+.+|.+|++.|+++.|+.+..+++++.++|.+.+.+.. +....|.++++..+++++...
T Consensus 299 ~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~-~~~~~f~~~~~~~~i~~~~~~ 362 (368)
T TIGR00903 299 AIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS-SAEAYFTFLAILITIAFAIAL 362 (368)
T ss_pred HHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHH
Confidence 5567899999999999999999999999999999999887763 445667777777777776653
No 14
>PRK09952 shikimate transporter; Provisional
Probab=99.82 E-value=4.2e-18 Score=147.48 Aligned_cols=251 Identities=13% Similarity=0.137 Sum_probs=138.4
Q ss_pred ceeeeeecCCCCchhhHHHHHHHHHHHHHHHHHhhh------------hhhhHHHHHHhhHHHHHHHHHhhccCCChHHH
Q 042030 3 PIYIAEITPKNIRGAFTATSQFLIVSGMSVMYLVGT------------IVSWRALALIAAVPCLLQVVGLFFIPESPRWL 70 (322)
Q Consensus 3 ~~~i~e~~~~~~rg~~~~~~~~~~~~G~~l~~~~~~------------~~~Wr~~f~~~~~~~~i~~~~~~~lpesp~~l 70 (322)
..++.|++|+++||+..+..+.++.+|.+++..+.. ..|||++|++.+++.++...++..+||+|+|.
T Consensus 147 ~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~~~l~~~~~es~~~~ 226 (438)
T PRK09952 147 ALLAVESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIALWVRNGMEESAEFE 226 (438)
T ss_pred HHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHHHHHHHhCCCChhHH
Confidence 357889999999999999999999999988865542 24899999999888777666677899999875
Q ss_pred HhcCCHHHHHHHHHHHhCCchhhhhhHHHHHHhhhhcccccccchh-hhcchhhHHHHHHHHHHHhhhhccchhhhHhcH
Q 042030 71 AKIGKEKELETTLQCLRGKTADISMESADIRDCTQTFEKDSKAGIF-DLFQRRYAYSLSVGVGLMVMQPFVGSAAIAYYA 149 (322)
Q Consensus 71 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (322)
.++++.++. +++.+.. .+++++..+.... ....+ .....+....|.
T Consensus 227 ~~~~~~~~~------------------------------~~~~~~~~~l~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~ 273 (438)
T PRK09952 227 QQQHEQAAA------------------------------KKRIPVIEALLRHPGAFLKII--ALRLC-ELLTMYIVTAFA 273 (438)
T ss_pred HHHhhcccc------------------------------cccCCHHHHHHHchHHHHHHH--HHHHH-HHHHHHHHHHHH
Confidence 332211100 0011112 2333332222211 11222 222355666777
Q ss_pred HHHHHH-cCCCchhH---HHHHHHHH------------------HHHHHHHHHHHHHHHHHHhccCCCCCCchhHHHHHH
Q 042030 150 SYIIAA-ADLSTDIG---SISMAIIQ------------------ASTIWMGLSLTIIALAFGLQDTHLWNEATPVLVYVG 207 (322)
Q Consensus 150 ~~~~~~-~g~~~~~~---~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (322)
|.++++ .|++.... ..+.+... ......... .+........... ....+..+..
T Consensus 274 ~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~ 349 (438)
T PRK09952 274 LNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIG-TLSAFPFFMALEA---QSIFWIVFFS 349 (438)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHH-HHHHHHHHHHHHc---CChHHHHHHH
Confidence 777654 47766421 11122111 001111111 1111111110000 0112222222
Q ss_pred HHHHHHHHhhcccchhhhhhccccCccccchhHHHHHHHHH-HHHHHHHHHHHHHHH-hh--hcchhHHHHHHHHHHHHH
Q 042030 208 IMGFSIAFALGMAGLPSVIMAEIFPINIKGSAGSLVILLHN-CSNWIVTYTFHFTME-WS--RTGTFSIFWVICAAAVLF 283 (322)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~-~g~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~ 283 (322)
.++...+.+ ...+..+.+.+|.+|++.|+++.++.+..++ +++.++|.+.+.+.+ .+ +...+...+++.+++++.
T Consensus 350 ~~l~~~~~~-~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~ 428 (438)
T PRK09952 350 IMLANIAHD-MVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMT 428 (438)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHH
Confidence 222222222 2244457889999999999999999877765 899999999999887 32 334455555555555444
Q ss_pred HHhhccCCC
Q 042030 284 VAFLVPETK 292 (322)
Q Consensus 284 ~~~~~~et~ 292 (322)
.+.++||+
T Consensus 429 -~~~~~~~~ 436 (438)
T PRK09952 429 -ALLMKDNQ 436 (438)
T ss_pred -HHHccccc
Confidence 34566654
No 15
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=99.82 E-value=3.7e-18 Score=147.73 Aligned_cols=248 Identities=14% Similarity=0.199 Sum_probs=136.5
Q ss_pred ceeeeeecCCCCchhhHHHHHHHHHHHHHHHHHhhh------------hhhhHHHHHHhhHHHHHHHHHhhccCCChHHH
Q 042030 3 PIYIAEITPKNIRGAFTATSQFLIVSGMSVMYLVGT------------IVSWRALALIAAVPCLLQVVGLFFIPESPRWL 70 (322)
Q Consensus 3 ~~~i~e~~~~~~rg~~~~~~~~~~~~G~~l~~~~~~------------~~~Wr~~f~~~~~~~~i~~~~~~~lpesp~~l 70 (322)
.++++|++|+++||+..++.+.+...|.++++.+.. ..|||++|++.++++++.++++..+||+|++.
T Consensus 146 ~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~~~~~~~e~~~~~ 225 (432)
T PRK10406 146 ATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVALWLRRQLDETSQQE 225 (432)
T ss_pred HHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHhcCCCCchHH
Confidence 467899999999999999998888888887765432 34899999999998888777777899987631
Q ss_pred HhcCCHHHHHHHHHHHhCCchhhhhhHHHHHHhhhhcccccccchhhhcchhhHHHHHHHHHHHhhhhccchhhhHhcHH
Q 042030 71 AKIGKEKELETTLQCLRGKTADISMESADIRDCTQTFEKDSKAGIFDLFQRRYAYSLSVGVGLMVMQPFVGSAAIAYYAS 150 (322)
Q Consensus 71 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (322)
.+ + ++++.+++++++++..+.... ...+.....++.+..|.|
T Consensus 226 ~~-----~------------------------------~~~~~~~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~lp 267 (432)
T PRK10406 226 TR-----A------------------------------LKEAGSLKGLWRNRRAFIMVL---GFTAAGSLCFYTFTTYMQ 267 (432)
T ss_pred Hh-----h------------------------------hcccccHHHHHhhHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 10 0 001124566666443322222 122222234566778888
Q ss_pred HHHHH-cCCCchhHHHHHHHHH----------------HH----HHHHHHHHHHHH--HHHHhccCCCCCCchhHHHHHH
Q 042030 151 YIIAA-ADLSTDIGSISMAIIQ----------------AS----TIWMGLSLTIIA--LAFGLQDTHLWNEATPVLVYVG 207 (322)
Q Consensus 151 ~~~~~-~g~~~~~~~~~~~~~~----------------~~----~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 207 (322)
.++++ .|++....+....+.. .+ .....+...+.. ........ ......+..
T Consensus 268 ~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 342 (432)
T PRK10406 268 KYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNV-----SSPYAAFGL 342 (432)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcC-----CcHHHHHHH
Confidence 88765 4877654333222211 00 001111011111 11111110 111221111
Q ss_pred HHHHHHHHhhcccchhhhhhccccCccccchhHHHHHHHHHH-HHHHHHHHHHHHHHhhhcc-hhHHHHHHHHHHHHHHH
Q 042030 208 IMGFSIAFALGMAGLPSVIMAEIFPINIKGSAGSLVILLHNC-SNWIVTYTFHFTMEWSRTG-TFSIFWVICAAAVLFVA 285 (322)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 285 (322)
..+...+.+. ..+..+.+.+|.+|++.|+++.|+.+..+++ ++...|.+.+.+...+... .++..++..+++.+..+
T Consensus 343 ~~~~~~~~~~-~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l~~~g~~~~~~~~~~~~~~i~~~~~~ 421 (432)
T PRK10406 343 VMCALLIVSF-YTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSLKSIGMETAFFWYVTLMAVVAFLVSL 421 (432)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHH
Confidence 1111111111 2234577889999999999999999988775 3555777777554444333 34444444444444333
Q ss_pred hhccCCCCCCh
Q 042030 286 FLVPETKGRHS 296 (322)
Q Consensus 286 ~~~~et~~~~~ 296 (322)
+ .++++|++
T Consensus 422 -~-l~~~~~~~ 430 (432)
T PRK10406 422 -M-LHRKGKGM 430 (432)
T ss_pred -H-hhhccccc
Confidence 3 34455543
No 16
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=99.81 E-value=4.5e-19 Score=144.37 Aligned_cols=262 Identities=14% Similarity=0.190 Sum_probs=164.7
Q ss_pred eeeeeecCCCCchhhHHHHHHHHHHHHHHHHHhh--hhh----hhHHHHHHhhHHHHHHH-HHhhccCCChHHHHhcCCH
Q 042030 4 IYIAEITPKNIRGAFTATSQFLIVSGMSVMYLVG--TIV----SWRALALIAAVPCLLQV-VGLFFIPESPRWLAKIGKE 76 (322)
Q Consensus 4 ~~i~e~~~~~~rg~~~~~~~~~~~~G~~l~~~~~--~~~----~Wr~~f~~~~~~~~i~~-~~~~~lpesp~~l~~~~~~ 76 (322)
..++-|+|++|||+..++++.+.++|..+.+++. ..+ +||..|++.++.+++.. +..+.++|+|+- .|-.
T Consensus 140 ~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~Pqs---~GLP 216 (448)
T COG2271 140 RTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQS---EGLP 216 (448)
T ss_pred HHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCccc---cCCC
Confidence 3567799999999999999999999999988777 443 89999999999988775 456778999862 2211
Q ss_pred HHHHHHHHHHhCCchhhhhhHHHHHHhhhhcccc-cccchhhhcchhhHHHHHHHHHHHhhhhccchhhhHhcHHHHHHH
Q 042030 77 KELETTLQCLRGKTADISMESADIRDCTQTFEKD-SKAGIFDLFQRRYAYSLSVGVGLMVMQPFVGSAAIAYYASYIIAA 155 (322)
Q Consensus 77 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (322)
+ +++.+++. .+.+ +++.+.+.-+ .+.-.+.+++++..|-+.+. .+.....-+++..|.|.++.+
T Consensus 217 ~-----ie~~~~d~----~e~~--~~~~~~~~ls~~~i~~~YVL~Nk~iW~la~a----~vfvYivR~gi~dW~p~YL~e 281 (448)
T COG2271 217 P-----IEEYRGDP----LEIY--EEEKENEGLTAWQIFVKYVLKNKLIWLLALA----NVFVYVVRYGINDWGPLYLSE 281 (448)
T ss_pred C-----HHHhhcCc----hhhh--hhhccCCCccHHHHHHHHHHcChHHHHHHHH----HHHHHHHHHHHhhhHHHHHHH
Confidence 1 00111110 0000 0000000000 11123334555554444333 222233578999999999887
Q ss_pred c-CCCchhHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHhccCCCCCCchhHHHHHHHHHH
Q 042030 156 A-DLSTDIGSISMAIIQ-----------------------ASTIWMGLSLTIIALAFGLQDTHLWNEATPVLVYVGIMGF 211 (322)
Q Consensus 156 ~-g~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (322)
. |++...+....+... ....++. ..+.+++..+.... +. ........++.
T Consensus 282 ~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~-~~i~~~~~~~w~~~----~~-~~~l~~~~l~~ 355 (448)
T COG2271 282 VKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFM-LLITASLVLYWLAP----NG-SYLLDAILLFI 355 (448)
T ss_pred hcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHH-HHHHHHHHHHHcCC----Cc-cHHHHHHHHHH
Confidence 6 888876666666555 1111111 11111222222211 12 23333344444
Q ss_pred HHHHhhcccchhhhhhccccCccccchhHHHHHHHHHH-HHHHHHHHHHHHHH-hhhcchhHHHHHHHHHHHHHHHhhcc
Q 042030 212 SIAFALGMAGLPSVIMAEIFPINIKGSAGSLVILLHNC-SNWIVTYTFHFTME-WSRTGTFSIFWVICAAAVLFVAFLVP 289 (322)
Q Consensus 212 ~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~-g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (322)
.+++..|+.-+......|..|.+.-|++.|+...++.+ |+..+....+.+.| .++...|+++.+.++++.++......
T Consensus 356 iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~~~~ 435 (448)
T COG2271 356 IGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLLLPVWN 435 (448)
T ss_pred HHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHHHHHHh
Confidence 55666666666778899999999999999999999999 88889888888877 68888888888888877776655544
No 17
>PRK10489 enterobactin exporter EntS; Provisional
Probab=99.80 E-value=4.7e-18 Score=146.56 Aligned_cols=258 Identities=14% Similarity=0.026 Sum_probs=157.1
Q ss_pred ceeeeeecCCCCchhhHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHhhHHHHHHHHHhhccCCChHHHHhcCCHHH
Q 042030 3 PIYIAEITPKNIRGAFTATSQFLIVSGMSVMYLVGTIV----SWRALALIAAVPCLLQVVGLFFIPESPRWLAKIGKEKE 78 (322)
Q Consensus 3 ~~~i~e~~~~~~rg~~~~~~~~~~~~G~~l~~~~~~~~----~Wr~~f~~~~~~~~i~~~~~~~lpesp~~l~~~~~~~~ 78 (322)
.+++.|+.|+++|++..++.+.+..+|..+++.++..+ +|||.|++.++..++..+..+.+||+++.. +++++.
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~ 209 (417)
T PRK10489 132 LAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLLPLLRLPALPPPP--QPREHP 209 (417)
T ss_pred hhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhCCCCCCCC--cccccc
Confidence 35678999999999999999999999998888887654 899999988887777666667788765310 000000
Q ss_pred HHHHHHHHhCCchhhhhhHHHHHHhhhhcccccccchhhhcchhhHHHHHHHHHHHhhhhccchhhhHhcHHHHHHH-cC
Q 042030 79 LETTLQCLRGKTADISMESADIRDCTQTFEKDSKAGIFDLFQRRYAYSLSVGVGLMVMQPFVGSAAIAYYASYIIAA-AD 157 (322)
Q Consensus 79 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g 157 (322)
.+ +.+..++..++++..+.......+... ......+.|.+.++ .|
T Consensus 210 ------------------~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~p~~~~~~~g 255 (417)
T PRK10489 210 ------------------LR-----------SLLAGFRFLLASPVVGGIALLGGLLTM-----ASAVRVLYPALADEVWQ 255 (417)
T ss_pred ------------------hH-----------HHHHHHHHHHcChHHHHHHHHHHHHHH-----HHhHHHhhHHHHHhccC
Confidence 00 011123445555544443332222111 23445677888877 58
Q ss_pred CCchhHHHHHHHHH----------------HH-HHHHHHHHHHHHHHHHhccCCCCCCchhHHHHHHHHHHHHHHhhccc
Q 042030 158 LSTDIGSISMAIIQ----------------AS-TIWMGLSLTIIALAFGLQDTHLWNEATPVLVYVGIMGFSIAFALGMA 220 (322)
Q Consensus 158 ~~~~~~~~~~~~~~----------------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (322)
.+....+.+.+... .. ...+..+..+.+......... ...+...++.++++.+.+ ...
T Consensus 256 ~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~g~~~~-~~~ 330 (417)
T PRK10489 256 MGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLM----PMWILAVLCLALFGYLSA-ISS 330 (417)
T ss_pred CChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHcc----chHHHHHHHHHHHHHHHH-HHH
Confidence 77664444433322 00 001111111111111111100 112222223322222222 123
Q ss_pred chhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH-hhhcchhHHHHHHHHHHHHHHHhhccCCCCCChhHH
Q 042030 221 GLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTME-WSRTGTFSIFWVICAAAVLFVAFLVPETKGRHSKKF 299 (322)
Q Consensus 221 ~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~et~~~~~~~~ 299 (322)
+....++.|..|++.|+++.|+.+...++|..++|.+.+.+.+ .+....+...+++.++.+++.+...+++|+++.+|.
T Consensus 331 ~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (417)
T PRK10489 331 LLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLLVLGELRRFRQTPP 410 (417)
T ss_pred HHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhcccccccccccc
Confidence 4446788999999999999999999999999999999999998 676777777887777777777778899988887765
Q ss_pred HH
Q 042030 300 KY 301 (322)
Q Consensus 300 ~~ 301 (322)
++
T Consensus 411 ~~ 412 (417)
T PRK10489 411 EV 412 (417)
T ss_pred cC
Confidence 44
No 18
>PRK11663 regulatory protein UhpC; Provisional
Probab=99.79 E-value=6e-18 Score=146.47 Aligned_cols=262 Identities=15% Similarity=0.170 Sum_probs=146.9
Q ss_pred eeeeeecCCCCchhhHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHhhHHHHHHH-HHhhccCCChHHHHhcCCHHH
Q 042030 4 IYIAEITPKNIRGAFTATSQFLIVSGMSVMYLVGTIV----SWRALALIAAVPCLLQV-VGLFFIPESPRWLAKIGKEKE 78 (322)
Q Consensus 4 ~~i~e~~~~~~rg~~~~~~~~~~~~G~~l~~~~~~~~----~Wr~~f~~~~~~~~i~~-~~~~~lpesp~~l~~~~~~~~ 78 (322)
+++.|++|+++||+.+++.+.+..+|..+++.+...+ |||+.|++.+++.++.. +..+++||+|++...+...+.
T Consensus 134 ~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 213 (434)
T PRK11663 134 KLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEW 213 (434)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCcccc
Confidence 4678999999999999999999999999988776554 89999999888766553 445678998864211110000
Q ss_pred HHHHHHHHhCCchhhhhhHHHHHHhhhhcccccccchhh-----hcchhhHHHHHHHHHHHhhhhccchhhhHhcHHHHH
Q 042030 79 LETTLQCLRGKTADISMESADIRDCTQTFEKDSKAGIFD-----LFQRRYAYSLSVGVGLMVMQPFVGSAAIAYYASYII 153 (322)
Q Consensus 79 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (322)
.+ +.++. .+ + +++.+.++++ .++++..+..... .+.....+..+..|.|.++
T Consensus 214 ~~-----------~~~~~----~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~p~~l 270 (434)
T PRK11663 214 RH-----------DALEL----AQ--Q--QEGAGLSRKEILTKYVLLNPYIWLLSFS----YVLVYVVRAAINDWGNLYM 270 (434)
T ss_pred cc-----------ccccc----ch--h--ccccCCChhhhHHHHHhcChHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 00 00000 00 0 0001112222 2333333332222 1222223456677888888
Q ss_pred HH-cCCCchhHHHHHHHHH----------------H-----HH--HHHHHHHHHHHHHHHhccCCCCCCchhHHHHHHHH
Q 042030 154 AA-ADLSTDIGSISMAIIQ----------------A-----ST--IWMGLSLTIIALAFGLQDTHLWNEATPVLVYVGIM 209 (322)
Q Consensus 154 ~~-~g~~~~~~~~~~~~~~----------------~-----~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (322)
++ .|++....+....... . .. ....++............. ..........+
T Consensus 271 ~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~ 345 (434)
T PRK11663 271 SETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLMPF-----ASYVMQAACFF 345 (434)
T ss_pred HhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHccc-----ccHHHHHHHHH
Confidence 54 5888765544433332 1 00 0111111111111111111 11111111111
Q ss_pred HHHHHHhhcccchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH-hhhcchhHHHHHHHHHHHHHHHhhc
Q 042030 210 GFSIAFALGMAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTME-WSRTGTFSIFWVICAAAVLFVAFLV 288 (322)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (322)
. .+.+..+..........|.+|++.|+++.|+.+..+++|++++|.+.+.+.+ .++...+...+++.+++++..+...
T Consensus 346 ~-~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~ 424 (434)
T PRK11663 346 T-IGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLLPFL 424 (434)
T ss_pred H-HHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1122222222334567899999999999999999999999999999999998 7777778888887777766555555
Q ss_pred cCCCCC
Q 042030 289 PETKGR 294 (322)
Q Consensus 289 ~et~~~ 294 (322)
++++++
T Consensus 425 ~~~~~~ 430 (434)
T PRK11663 425 NAQAPR 430 (434)
T ss_pred hhhchh
Confidence 544433
No 19
>PRK12307 putative sialic acid transporter; Provisional
Probab=99.78 E-value=3.3e-17 Score=141.86 Aligned_cols=234 Identities=17% Similarity=0.142 Sum_probs=132.5
Q ss_pred ceeeeeecCCCCchhhHHHHHHHHHHHHHHHHHhhhh----hhhHHHHHHhhHHHHHHHHHhhccCCChHHHHhcCCHHH
Q 042030 3 PIYIAEITPKNIRGAFTATSQFLIVSGMSVMYLVGTI----VSWRALALIAAVPCLLQVVGLFFIPESPRWLAKIGKEKE 78 (322)
Q Consensus 3 ~~~i~e~~~~~~rg~~~~~~~~~~~~G~~l~~~~~~~----~~Wr~~f~~~~~~~~i~~~~~~~lpesp~~l~~~~~~~~ 78 (322)
..++.|++|+++|+++.++.+.+..+|.++++.+... .+||+.|++..++.++.+.+....||++++..++.+.+
T Consensus 128 ~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~- 206 (426)
T PRK12307 128 STYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGLLPVLLVIYIRARAPESKEWEEAKLSGK- 206 (426)
T ss_pred HHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHHHHHCCCChHHHHhhhhcc-
Confidence 3567899999999999999999999999998877654 38999999876655554444555788776532111000
Q ss_pred HHHHHHHHhCCchhhhhhHHHHHHhhhhcccccccchhhhcchhhHHHHHHHHHHHhhhhccchhhhHhcHHHHHHHcCC
Q 042030 79 LETTLQCLRGKTADISMESADIRDCTQTFEKDSKAGIFDLFQRRYAYSLSVGVGLMVMQPFVGSAAIAYYASYIIAAADL 158 (322)
Q Consensus 79 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 158 (322)
++.. +...+..+.+++++++++..+.........+. .+...+.+..+.|.++++.|.
T Consensus 207 -----------~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~ 263 (426)
T PRK12307 207 -----------GKHS-----------QSAWSVFSLSMKGLFNRAQFPLTLCVFIVLFS-IFGANWPIFGLLPTYLAGEGF 263 (426)
T ss_pred -----------cccc-----------ccchhhhhHHHHHHHhhchHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHcCC
Confidence 0000 00000012245667776655544443332222 222334456778888888888
Q ss_pred CchhHHHHHHHHH----------------HHHH-HHHHHHHH--HHHHHHhccCCCCCCchhHHHHHHHHHHHHH-Hhhc
Q 042030 159 STDIGSISMAIIQ----------------ASTI-WMGLSLTI--IALAFGLQDTHLWNEATPVLVYVGIMGFSIA-FALG 218 (322)
Q Consensus 159 ~~~~~~~~~~~~~----------------~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 218 (322)
+....+....... .+.. ....+.++ ........... . .... .....+..+ ...+
T Consensus 264 ~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~-~~~~~~~~~~~~~~ 337 (426)
T PRK12307 264 DTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQ----D-NYLL-LGACLFGLMATNVG 337 (426)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcc----c-cHHH-HHHHHHHHHHhccc
Confidence 7654433332221 0000 01111111 11111110000 1 1111 111222222 2223
Q ss_pred ccchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH-hhh
Q 042030 219 MAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTME-WSR 266 (322)
Q Consensus 219 ~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~ 266 (322)
..+....++.|.+|++.|+++.|+.+..+++++.++|.+.+.+.+ .+.
T Consensus 338 ~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g~ 386 (426)
T PRK12307 338 VGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMGL 386 (426)
T ss_pred HhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHcccH
Confidence 344556778999999999999999999999999999999999888 443
No 20
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=99.77 E-value=9.7e-17 Score=138.03 Aligned_cols=222 Identities=13% Similarity=0.130 Sum_probs=128.7
Q ss_pred ceeeeeecCCCCchhhHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHhhHHHHHHH-HHhhccCCChHHHHhcCCHH
Q 042030 3 PIYIAEITPKNIRGAFTATSQFLIVSGMSVMYLVGTIV----SWRALALIAAVPCLLQV-VGLFFIPESPRWLAKIGKEK 77 (322)
Q Consensus 3 ~~~i~e~~~~~~rg~~~~~~~~~~~~G~~l~~~~~~~~----~Wr~~f~~~~~~~~i~~-~~~~~lpesp~~l~~~~~~~ 77 (322)
.+++.|++|+++|++..++.+.+..+|..+++.++..+ +||+.|++.++..++.. +...++||+|++..++++.+
T Consensus 125 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 204 (406)
T PRK11551 125 IALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGK 204 (406)
T ss_pred HHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCcch
Confidence 35678999999999999999999999999998887544 89999999877655554 44567899987543221111
Q ss_pred HHHHHHHHHhCCchhhhhhHHHHHHhhhhcccccccchhhhcchhhHHHHHHHHHHHhhhhccchhhhHhcHHHHHHHcC
Q 042030 78 ELETTLQCLRGKTADISMESADIRDCTQTFEKDSKAGIFDLFQRRYAYSLSVGVGLMVMQPFVGSAAIAYYASYIIAAAD 157 (322)
Q Consensus 78 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 157 (322)
+.+ ...+..++++..++.... ....+......+....+.|.++++.|
T Consensus 205 ~~~--------------------------------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~~~~~~g 251 (406)
T PRK11551 205 QRA--------------------------------PVLRALFGEGRATATLLL-WISYFFTLIVLYFLLNWLPSLLVGQG 251 (406)
T ss_pred hhh--------------------------------hhHHHHhhhhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 000 001111111111111111 11112222234556677888888888
Q ss_pred CCchhHHHHHHHHH----------------HHHH-HHHHHHH--HHHHHHHhccCCCCCCchhHHHHHHHHHHHHHHhhc
Q 042030 158 LSTDIGSISMAIIQ----------------ASTI-WMGLSLT--IIALAFGLQDTHLWNEATPVLVYVGIMGFSIAFALG 218 (322)
Q Consensus 158 ~~~~~~~~~~~~~~----------------~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (322)
++....+....... .+.. ....+.. ..+....... ...+......++. .....+
T Consensus 252 ~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~-g~~~~~ 324 (406)
T PRK11551 252 LSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAA------PSFAGMLLAGFAA-GLFVVG 324 (406)
T ss_pred CChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhc------CcHHHHHHHHHHH-HHHHHh
Confidence 87654443333322 1100 0111111 1111111111 1112222222222 222233
Q ss_pred ccchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042030 219 MAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTMEW 264 (322)
Q Consensus 219 ~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 264 (322)
..+..+.+..|.+|++.|+++.|+.+..+++|+.++|.+.+.+.+.
T Consensus 325 ~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~ 370 (406)
T PRK11551 325 GQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLAL 370 (406)
T ss_pred HHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhcc
Confidence 4556678899999999999999999999999999999999998883
No 21
>TIGR00893 2A0114 d-galactonate transporter.
Probab=99.76 E-value=5.5e-17 Score=138.89 Aligned_cols=260 Identities=15% Similarity=0.080 Sum_probs=148.5
Q ss_pred ceeeeeecCCCCchhhHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHhhHHHHHHHHH-hhccCCChHHHHhcCCHH
Q 042030 3 PIYIAEITPKNIRGAFTATSQFLIVSGMSVMYLVGTIV----SWRALALIAAVPCLLQVVG-LFFIPESPRWLAKIGKEK 77 (322)
Q Consensus 3 ~~~i~e~~~~~~rg~~~~~~~~~~~~G~~l~~~~~~~~----~Wr~~f~~~~~~~~i~~~~-~~~lpesp~~l~~~~~~~ 77 (322)
..++.|++|+++|++..++.+.+..+|.++++.++..+ +||+.|++.+++.++..+. .++.||+|+.. +...+
T Consensus 104 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 181 (399)
T TIGR00893 104 ILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVLWLKFIPDPPQKA--KWLTE 181 (399)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhheecCCCCcc--ccCCH
Confidence 45788999999999999999999999999998887654 8999999988887766544 45677766411 11111
Q ss_pred HHHHHHHHHhCCchhhhhhHHHHHHhhhhcccccccchhhhcchhhHHHHHHHHHHHhhhhccchhhhHhcHHHHHHH-c
Q 042030 78 ELETTLQCLRGKTADISMESADIRDCTQTFEKDSKAGIFDLFQRRYAYSLSVGVGLMVMQPFVGSAAIAYYASYIIAA-A 156 (322)
Q Consensus 78 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 156 (322)
+.++...+... . +...+++++..+...++.++++..+....... ...........+.|.++++ .
T Consensus 182 ~~~~~~~~~~~------~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 246 (399)
T TIGR00893 182 EEKYIVVGGLL------A-----EQQGKGPSTPKKYQIKELLKDRRVWGLALGQF----LVNIGLGFFLTWFPTYLVQER 246 (399)
T ss_pred HHHhhcchhhc------c-----ccccccccCCCccchHHHhcCHHHHHHHHHHH----HHHhHHHHHHHHHHHHHHHHh
Confidence 11000000000 0 00001111223334556666554443333222 2223455667777877765 4
Q ss_pred CCCchhHHHHHHHHH----------------HHHH---------HHHHHHHHHHHHHHhccCCCCCCchhHHHHHHHHHH
Q 042030 157 DLSTDIGSISMAIIQ----------------ASTI---------WMGLSLTIIALAFGLQDTHLWNEATPVLVYVGIMGF 211 (322)
Q Consensus 157 g~~~~~~~~~~~~~~----------------~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (322)
|.+....+....... .+.. ......+..+......... ...+..+. .. .
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-~~-~ 320 (399)
T TIGR00893 247 GLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYV----NIPYAALA-LV-A 320 (399)
T ss_pred cccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccc----hhHHHHHH-HH-H
Confidence 776654433332221 0111 1111111111111111100 11122222 11 1
Q ss_pred HHHHhhcccchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH-hh-hcchhHHHHHHHHHHHHHHH
Q 042030 212 SIAFALGMAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTME-WS-RTGTFSIFWVICAAAVLFVA 285 (322)
Q Consensus 212 ~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~ 285 (322)
..++..+..+..+.+.+|.+|++.|+++.|+.+.+.++|+.++|.+.+.+.+ .+ +...+.+.+++.+++.+..+
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 396 (399)
T TIGR00893 321 LGFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSYL 396 (399)
T ss_pred HHHhchhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHHH
Confidence 2233333567778999999999999999999999999999999999999988 45 56667666666666655443
No 22
>PRK15075 citrate-proton symporter; Provisional
Probab=99.74 E-value=8.1e-16 Score=133.27 Aligned_cols=222 Identities=16% Similarity=0.153 Sum_probs=116.8
Q ss_pred ceeeeeecCCCCchhhHHHHHHHHHHHHHHHHHhhhh------------hhhHHHHHHhhHHHHHHHHHhhccCCChHHH
Q 042030 3 PIYIAEITPKNIRGAFTATSQFLIVSGMSVMYLVGTI------------VSWRALALIAAVPCLLQVVGLFFIPESPRWL 70 (322)
Q Consensus 3 ~~~i~e~~~~~~rg~~~~~~~~~~~~G~~l~~~~~~~------------~~Wr~~f~~~~~~~~i~~~~~~~lpesp~~l 70 (322)
..+++|++|+++||+..++...+..+|..+++.++.. .|||++|++..+..++........||++++.
T Consensus 139 ~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~~~e~~~~~ 218 (434)
T PRK15075 139 SVYLAEIATPGRKGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCLIVPFIFLIRRSLEETEEFL 218 (434)
T ss_pred HHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 3578999999999999999888777766665554432 4899999986655444444445566665432
Q ss_pred HhcCCHHHHHHHHHHHhCCchhhhhhHHHHHHhhhhcccccccchhhhcchhhHHHHHHHHHHHhhhhccchhhhHhcHH
Q 042030 71 AKIGKEKELETTLQCLRGKTADISMESADIRDCTQTFEKDSKAGIFDLFQRRYAYSLSVGVGLMVMQPFVGSAAIAYYAS 150 (322)
Q Consensus 71 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (322)
.++++ .+.+..+++..++ ++.........+.+...++.+..|.|
T Consensus 219 ~~~~~---------------------------------~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~p 262 (434)
T PRK15075 219 ARKHR---------------------------------PSMREIFRSLAAN---WRIVLAGMLMVAMTTVSFYLITVYTP 262 (434)
T ss_pred Hhhhc---------------------------------cccccHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11000 0001111222221 12222112222223334677888899
Q ss_pred HHHHH-cCCCchhHHHHHHHHH----------------HH----HHHHHHHHHHHHH-HHHhccCCCCCCchhHHHHHHH
Q 042030 151 YIIAA-ADLSTDIGSISMAIIQ----------------AS----TIWMGLSLTIIAL-AFGLQDTHLWNEATPVLVYVGI 208 (322)
Q Consensus 151 ~~~~~-~g~~~~~~~~~~~~~~----------------~~----~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 208 (322)
.++++ .|++.........+.. .+ ............. ....... . ..........
T Consensus 263 ~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~ 338 (434)
T PRK15075 263 TFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVA---A-PSFARMLAVE 338 (434)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHc---C-CchHHHHHHH
Confidence 99887 4887654333222211 00 0000001111111 0001000 0 1111111111
Q ss_pred HHHHHHHhhcccchhhhhhccccCccccchhHHHHHHHHHH-HHHHHHHHHHHHHH-hh
Q 042030 209 MGFSIAFALGMAGLPSVIMAEIFPINIKGSAGSLVILLHNC-SNWIVTYTFHFTME-WS 265 (322)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~-g~~~~~~~~~~~~~-~~ 265 (322)
.+...+++ ...+..+.+..|.+|++.|+++.++.+..++. ++.++|.+.+.+.+ .+
T Consensus 339 ~~~~~~~g-~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g 396 (434)
T PRK15075 339 LWLSFLYG-SYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTG 396 (434)
T ss_pred HHHHHHHH-HHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcC
Confidence 11122222 23344467889999999999999998776665 58889999998888 44
No 23
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=99.74 E-value=4.3e-16 Score=135.63 Aligned_cols=259 Identities=12% Similarity=0.139 Sum_probs=136.9
Q ss_pred eeeeeecCCCCchhhHHHHHHHHHHHHH-HHHHhhh----hhhhHHHHHHhhHHHHHH-HHHhhccCCChHHHHhcCCHH
Q 042030 4 IYIAEITPKNIRGAFTATSQFLIVSGMS-VMYLVGT----IVSWRALALIAAVPCLLQ-VVGLFFIPESPRWLAKIGKEK 77 (322)
Q Consensus 4 ~~i~e~~~~~~rg~~~~~~~~~~~~G~~-l~~~~~~----~~~Wr~~f~~~~~~~~i~-~~~~~~lpesp~~l~~~~~~~ 77 (322)
..+.|++|+++||+..++++.+..+|.. .+++++. ..+||+.|++.+++.++. ++..+++||+|+....+ +++
T Consensus 143 ~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~ 221 (452)
T PRK11273 143 RTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVALFAFAMMRDTPQSCGLP-PIE 221 (452)
T ss_pred HHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCHhhcCCC-Chh
Confidence 3467889999999999999999988864 4554332 228999999988876665 44567789988632111 111
Q ss_pred HHHHHHHHHhCCchhhhhhHHHHHHhhhhcccccccch-hhhcchhhHHHHHHHHHHHhhhhccchhhhHhcHHHHHHHc
Q 042030 78 ELETTLQCLRGKTADISMESADIRDCTQTFEKDSKAGI-FDLFQRRYAYSLSVGVGLMVMQPFVGSAAIAYYASYIIAAA 156 (322)
Q Consensus 78 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (322)
+.+ .+. +++ . +..+.++.+.+..+ +.+++++..+.......+.. ...+....|.|.++++.
T Consensus 222 ~~~-------~~~---~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~P~~l~~~ 283 (452)
T PRK11273 222 EYK-------NDY---PDD---Y-NEKHEQELTAKQIFMQYVLPNKLLWYIAIANVFVY----LLRYGILDWSPTYLKEV 283 (452)
T ss_pred hhh-------hcc---ccc---c-ccccCCCccHHHHHHHHHHcChHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHh
Confidence 100 000 000 0 00000000001111 12444444443333322222 23456678899988874
Q ss_pred -CCCchhHHHHHHHHH----------------H--HH---HHHH-HHHHHHHHHHHhccCCCCCCchhHHHHHHHHHHHH
Q 042030 157 -DLSTDIGSISMAIIQ----------------A--ST---IWMG-LSLTIIALAFGLQDTHLWNEATPVLVYVGIMGFSI 213 (322)
Q Consensus 157 -g~~~~~~~~~~~~~~----------------~--~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (322)
|++....+....+.. . .. .... .....++......... ..........+..+.
T Consensus 284 ~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~----~~~~~~~~~~~~~g~ 359 (452)
T PRK11273 284 KHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPA----GNPTVDMACMIVIGF 359 (452)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhcc----cChHHHHHHHHHHHH
Confidence 777654443332211 1 00 0010 1111111111111000 111222222222111
Q ss_pred HHhhcccchhhhhhccccCccccchhHHHHHHHHHHHHHH-HHHHHHHHHH-hhhcchhHHHHHHHHHHHHHHHh
Q 042030 214 AFALGMAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWI-VTYTFHFTME-WSRTGTFSIFWVICAAAVLFVAF 286 (322)
Q Consensus 214 ~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 286 (322)
...+.......+..|.+|++.|+++.|+.+...++|+.+ +|.+.+.+.+ .++...|.+.+++++++++....
T Consensus 360 -~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 433 (452)
T PRK11273 360 -LIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV 433 (452)
T ss_pred -HHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 111222223456779999999999999999999998765 7999999888 67777787777777777665543
No 24
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=99.74 E-value=2.9e-16 Score=136.18 Aligned_cols=266 Identities=12% Similarity=0.145 Sum_probs=146.2
Q ss_pred eeeeeecCCCCchhhHHHHHHHHHHHHHHHHHhhhh-----hhhHHHHHHhhHHHHHHH-HHhhccCCChHHHHhcCCHH
Q 042030 4 IYIAEITPKNIRGAFTATSQFLIVSGMSVMYLVGTI-----VSWRALALIAAVPCLLQV-VGLFFIPESPRWLAKIGKEK 77 (322)
Q Consensus 4 ~~i~e~~~~~~rg~~~~~~~~~~~~G~~l~~~~~~~-----~~Wr~~f~~~~~~~~i~~-~~~~~lpesp~~l~~~~~~~ 77 (322)
.++.|++|+++||++.++.+.+..+|..+++.+... .+||+.|++.++++++.. +..+++||+|+....+ +.+
T Consensus 141 ~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~ 219 (438)
T TIGR00712 141 RTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALFAFAMMRDTPQSCGLP-PIE 219 (438)
T ss_pred HHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhccCCHHhcCCC-Cch
Confidence 356789999999999999999999988887654432 389999999888877654 4567789988632100 000
Q ss_pred HHHHHHHHHhCCchhhhhhHHHHHHhhhhcccccccc-hhhhcchhhHHHHHHHHHHHhhhhccchhhhHhcHHHHHHHc
Q 042030 78 ELETTLQCLRGKTADISMESADIRDCTQTFEKDSKAG-IFDLFQRRYAYSLSVGVGLMVMQPFVGSAAIAYYASYIIAAA 156 (322)
Q Consensus 78 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (322)
+. +.+. +++. .+..+. +.+.+.. .+.+++++..+.......+.. ...+.+..|.|.++++.
T Consensus 220 ~~-------~~~~---~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~p~~l~~~ 281 (438)
T TIGR00712 220 EY-------RNDY---PDDY---NEKAEQ-ELTAKEIFMQYVLPNKLLWYIAIANVFVY----LLRYGVLDWSPTYLKEV 281 (438)
T ss_pred hc-------cccc---cccc---cccccc-ccchHHHHHHHHccCchHHHHHHHHHHHH----HHHHHHHHhHHHHHHHc
Confidence 00 0000 0000 000000 0001111 123455554444433322222 23456777889888874
Q ss_pred -CCCchhHHHHHHHHH----------------H--H---HHHHHHH-HHHHHHHHHhccCCCCCCchhHHHHHHHHHHHH
Q 042030 157 -DLSTDIGSISMAIIQ----------------A--S---TIWMGLS-LTIIALAFGLQDTHLWNEATPVLVYVGIMGFSI 213 (322)
Q Consensus 157 -g~~~~~~~~~~~~~~----------------~--~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (322)
|++....+....... . . ....... ..+.+........ . ...+......+..+.
T Consensus 282 ~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~g~ 357 (438)
T TIGR00712 282 KHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNP-A---GNPLVDMICMIVIGF 357 (438)
T ss_pred cCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcC-C---CchHHHHHHHHHHHH
Confidence 777654443332222 1 0 0001011 1111111111110 0 111222222221111
Q ss_pred HHhhcccchhhhhhccccCccccchhHHHHHHHHHHHH-HHHHHHHHHHHH-hhhcchhHHHHHHHHHHHHHHHhhccCC
Q 042030 214 AFALGMAGLPSVIMAEIFPINIKGSAGSLVILLHNCSN-WIVTYTFHFTME-WSRTGTFSIFWVICAAAVLFVAFLVPET 291 (322)
Q Consensus 214 ~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~et 291 (322)
. ..+..........|.+|++.|+++.|+.+..+++++ .++|.+.+.+.+ .++...+.+..++.+++.+....++||.
T Consensus 358 ~-~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (438)
T TIGR00712 358 L-IYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGE 436 (438)
T ss_pred H-HccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 1 112222223457799999999999999999988875 689999999988 6777778877887778877777788876
Q ss_pred CC
Q 042030 292 KG 293 (322)
Q Consensus 292 ~~ 293 (322)
|+
T Consensus 437 ~~ 438 (438)
T TIGR00712 437 KR 438 (438)
T ss_pred cC
Confidence 53
No 25
>PRK03893 putative sialic acid transporter; Provisional
Probab=99.72 E-value=7.4e-16 Score=136.07 Aligned_cols=271 Identities=14% Similarity=0.104 Sum_probs=136.7
Q ss_pred eeeeeecCCCCchhhHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHhhHHHHHHHHHhhccCCChHHHHhcCCHHHH
Q 042030 4 IYIAEITPKNIRGAFTATSQFLIVSGMSVMYLVGTIV----SWRALALIAAVPCLLQVVGLFFIPESPRWLAKIGKEKEL 79 (322)
Q Consensus 4 ~~i~e~~~~~~rg~~~~~~~~~~~~G~~l~~~~~~~~----~Wr~~f~~~~~~~~i~~~~~~~lpesp~~l~~~~~~~~a 79 (322)
.++.|++|+++|++..++...+..+|..+++.++..+ +||+.|++..++.++.++....+||++++..++++.++.
T Consensus 131 ~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 210 (496)
T PRK03893 131 TYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIGILPIIFALWLRKNLPEAEDWKEKHAGKAPV 210 (496)
T ss_pred HHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhccccccc
Confidence 4678999999999999999999999999998877654 899999987666665555667789988764332222111
Q ss_pred HHHHHHHhCCchhhhhhHHHHHH---hhhhcccccccchh-------------hh--cchhhHHHHHHHHHHHhhhhccc
Q 042030 80 ETTLQCLRGKTADISMESADIRD---CTQTFEKDSKAGIF-------------DL--FQRRYAYSLSVGVGLMVMQPFVG 141 (322)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-------------~l--~~~~~~~~~~~~~~~~~~~~~~~ 141 (322)
++..+.....+............ ............+. .. ..+...++.........+..+..
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (496)
T PRK03893 211 RTMVDILYRGEHRIINILLTLAAAAALWFCFAGNLQNAAIVAVLGLLCAAIFISFMVQSSGKRWPTGVMLMVVVLFAFLY 290 (496)
T ss_pred hhHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhc
Confidence 11111111110000000000000 00000000000000 00 00011111111111122222222
Q ss_pred hhhhHhcHHHHHH-HcCCCchhHHHHHHHHH----------------HHH-HHHHHHHHHHHHHHHhccCCCCCCchhHH
Q 042030 142 SAAIAYYASYIIA-AADLSTDIGSISMAIIQ----------------AST-IWMGLSLTIIALAFGLQDTHLWNEATPVL 203 (322)
Q Consensus 142 ~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~----------------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (322)
.+....+.|.+++ +.|++....+.+..... .+. .....+.++.+........ . .....+.
T Consensus 291 ~~~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~ 368 (496)
T PRK03893 291 SWPIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFA-I-GGANVWV 368 (496)
T ss_pred cchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhh-c-cccHHHH
Confidence 2345667888885 66888765544444333 100 0111111111111110000 0 0011121
Q ss_pred HHHHHHHHHHHHhhcccchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH-hhhcchhHHHHHHH
Q 042030 204 VYVGIMGFSIAFALGMAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTME-WSRTGTFSIFWVIC 277 (322)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 277 (322)
. ....+...+.+.+..+....++.|.+|++.|++++|+.+....+|+.++|.+.+.+.+ .++...+...++.+
T Consensus 369 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~~~ 442 (496)
T PRK03893 369 L-GLLLFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLSFSL 442 (496)
T ss_pred H-HHHHHHHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHHHH
Confidence 1 1122222233334445557788999999999999999999999999999999999888 56555554444433
No 26
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=99.71 E-value=3.2e-16 Score=137.15 Aligned_cols=254 Identities=12% Similarity=0.030 Sum_probs=143.4
Q ss_pred ceeeeeecCCCCchhhHHHHHHHHHHHHHHHHHhhhhh-----hhHHHHHHhhHHHHHHHHHh-hccCCChHHHHhcCCH
Q 042030 3 PIYIAEITPKNIRGAFTATSQFLIVSGMSVMYLVGTIV-----SWRALALIAAVPCLLQVVGL-FFIPESPRWLAKIGKE 76 (322)
Q Consensus 3 ~~~i~e~~~~~~rg~~~~~~~~~~~~G~~l~~~~~~~~-----~Wr~~f~~~~~~~~i~~~~~-~~lpesp~~l~~~~~~ 76 (322)
..+++|++|+++|+++.++...+..+|..+++.++..+ +||+.|++.++++++..+.+ .+.+|+|+. +.+.
T Consensus 153 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~---~~~~ 229 (465)
T TIGR00894 153 HKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSI---HPCI 229 (465)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCccc---CCCC
Confidence 45789999999999999999999999999888776543 89999999999887776554 556787752 1111
Q ss_pred HHHHHHHHHHhCCchhhhhhHHHHHHh--hhhcccccccchhhhcchhhHHHHHHHHHHHhhhhccchhhhHhcHHHHHH
Q 042030 77 KELETTLQCLRGKTADISMESADIRDC--TQTFEKDSKAGIFDLFQRRYAYSLSVGVGLMVMQPFVGSAAIAYYASYIIA 154 (322)
Q Consensus 77 ~~a~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (322)
++.++ +.+++. .+..+.+.+.+++++++++..+..... .+....+.+.+..|.|.+++
T Consensus 230 ~~~~~----------------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~lp~~l~ 289 (465)
T TIGR00894 230 SKFEK----------------KYINSSLQGQKGSTRQSLPIKAIPKSLPVWAIWFA----IFGHFWLYTILPTYLPTFIS 289 (465)
T ss_pred CHHHH----------------HHHHhhcccccCCCCCCCCHHHHhcCHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 11100 000000 000011123457777776554444333 22333346777889998887
Q ss_pred Hc-CCCchhHHHHHHHHH----------------H----------H-HHHHHHHHHHHHHHHHhccCCCCCCchhHHHHH
Q 042030 155 AA-DLSTDIGSISMAIIQ----------------A----------S-TIWMGLSLTIIALAFGLQDTHLWNEATPVLVYV 206 (322)
Q Consensus 155 ~~-g~~~~~~~~~~~~~~----------------~----------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (322)
+. |++....+...++.. . . .....++....+.......... ......+.
T Consensus 290 ~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 366 (465)
T TIGR00894 290 WVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLS---AAFYLTII 366 (465)
T ss_pred HHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcC---CchHHHHH
Confidence 64 887765554443322 0 0 0111111111111111111000 11222222
Q ss_pred HHHHHHHHHhhcccchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHh----hhcchhHHHHHHHHHHHH
Q 042030 207 GIMGFSIAFALGMAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTMEW----SRTGTFSIFWVICAAAVL 282 (322)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 282 (322)
.+.+.. ++..+..+..+....|..|. .++.+.|+.+..+.++++++|.+.+.+.+. .+...|.+.+++.+++.+
T Consensus 367 ~~~l~~-~~~~~~~~~~~~~~~~~~~~-~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i 444 (465)
T TIGR00894 367 ILTLAN-AVSSGPLAGVLINSLDLAPR-FLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVI 444 (465)
T ss_pred HHHHHH-HHhhhhhhhhhhchhhcChh-HHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHH
Confidence 222222 22222223334455677665 889999999999999999999999987652 245566666666666655
Q ss_pred HH
Q 042030 283 FV 284 (322)
Q Consensus 283 ~~ 284 (322)
+.
T Consensus 445 ~~ 446 (465)
T TIGR00894 445 FY 446 (465)
T ss_pred He
Confidence 43
No 27
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=99.71 E-value=3.4e-16 Score=134.54 Aligned_cols=254 Identities=12% Similarity=0.149 Sum_probs=134.3
Q ss_pred eeeeeecCCCCchhhHHHHHHHHHHHHHHHHHhhhh----------hhhHHHHHHhhHHHHHHH-HHhhccCCChH---H
Q 042030 4 IYIAEITPKNIRGAFTATSQFLIVSGMSVMYLVGTI----------VSWRALALIAAVPCLLQV-VGLFFIPESPR---W 69 (322)
Q Consensus 4 ~~i~e~~~~~~rg~~~~~~~~~~~~G~~l~~~~~~~----------~~Wr~~f~~~~~~~~i~~-~~~~~lpesp~---~ 69 (322)
.++.|++|+++||+..++++.+..+|..+++.++.. .|||+.|++.++++++.. +.++++||+|+ |
T Consensus 119 ~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~~~ 198 (412)
T TIGR02332 119 LYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKAKW 198 (412)
T ss_pred HHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcccCCC
Confidence 467899999999999999999999999998887653 389999999888877664 45677899985 2
Q ss_pred HHhcCCHHHHHHHHHHHhCCchhhhhhHHHHHHhhhhcccccccchhhhcchhhHHHHHHHHHHHhhhhccchhhhHhcH
Q 042030 70 LAKIGKEKELETTLQCLRGKTADISMESADIRDCTQTFEKDSKAGIFDLFQRRYAYSLSVGVGLMVMQPFVGSAAIAYYA 149 (322)
Q Consensus 70 l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (322)
+.+ ++.+...++.+.+..+.++ . ++..+.++...+..++++++ +..+ ......++....++.+..|.
T Consensus 199 l~~----~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~ 265 (412)
T TIGR02332 199 LDE----EDKKALKEMIDNDQLTLEQ-P---EGAFAHAAMPQRSMLREIFT-PAIM----LYTLAYFCLTNTLSAINIWT 265 (412)
T ss_pred CCH----HHHHHHHHHHHhccccccc-c---ccccccccccHHHHHHHhcC-hHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 211 1111111111111000000 0 00000000011122344443 2222 22223333334567788899
Q ss_pred HHHHHHc--CCCchhHHHHHHHHH----------------HH--HHHHHHHHHHHHHHHHhccCCCCCCchhHHHHHHHH
Q 042030 150 SYIIAAA--DLSTDIGSISMAIIQ----------------AS--TIWMGLSLTIIALAFGLQDTHLWNEATPVLVYVGIM 209 (322)
Q Consensus 150 ~~~~~~~--g~~~~~~~~~~~~~~----------------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (322)
|.++++. +++....+....... .. ........+..+......... . . ....+..+.
T Consensus 266 p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~--~-~-~~~~~~~~~ 341 (412)
T TIGR02332 266 PQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGWLLASAT--D-H-NLIQLLGII 341 (412)
T ss_pred HHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHHHHHHhc--C-C-HHHHHHHHH
Confidence 9999875 455443333222222 00 000111111111111111100 0 1 111111122
Q ss_pred HHHHHHhhcccchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH-hh-hcchhHHHHH
Q 042030 210 GFSIAFALGMAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTME-WS-RTGTFSIFWV 275 (322)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~-~~~~~~~~~~ 275 (322)
....+. ....+..+....|.+|++.|+++.|+.+..+++|++++|.+.+.+.+ .+ +...+.+.++
T Consensus 342 ~~~~g~-~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~ 408 (412)
T TIGR02332 342 MASMGS-FSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKDATGSFNSGLWFVAA 408 (412)
T ss_pred HHHHHh-hhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCCCchhHHHHHH
Confidence 111111 11223345566788999999999999999999999999999998888 33 4444544433
No 28
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=99.70 E-value=3.4e-15 Score=128.37 Aligned_cols=242 Identities=18% Similarity=0.159 Sum_probs=130.6
Q ss_pred ceeeeeecCCCCchhhHHHHHHHHHHHHHHHHHhhhhh----h--hHHHHHHhhHHHHHHHHHhhccCCChHHHHhcCCH
Q 042030 3 PIYIAEITPKNIRGAFTATSQFLIVSGMSVMYLVGTIV----S--WRALALIAAVPCLLQVVGLFFIPESPRWLAKIGKE 76 (322)
Q Consensus 3 ~~~i~e~~~~~~rg~~~~~~~~~~~~G~~l~~~~~~~~----~--Wr~~f~~~~~~~~i~~~~~~~lpesp~~l~~~~~~ 76 (322)
.+++.|++|+++|+++.++.+.+..+|..+++.++..+ + ||+.|++.+++.++..+....+||++++..++++.
T Consensus 122 ~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (405)
T TIGR00891 122 AAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFALWLRKNIPEAEDWKEKHAGK 201 (405)
T ss_pred HHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHhhhh
Confidence 35678999999999999999999999999988877654 4 99999998877777666677889998765333222
Q ss_pred HHHHHHHHHHhCCchhhhhhHHHHHHhhhhcccccccchhhhcchhhHHHHH-HHHHHHhhhhccchhhhHhcHHHHHHH
Q 042030 77 KELETTLQCLRGKTADISMESADIRDCTQTFEKDSKAGIFDLFQRRYAYSLS-VGVGLMVMQPFVGSAAIAYYASYIIAA 155 (322)
Q Consensus 77 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (322)
++.++..++..+......... ++.....++.. ...+... .......+... .......+.|.++.+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 267 (405)
T TIGR00891 202 ALVRTMVDILYGGEHRIANIV-----------MTLAAAMVQSA--GKRWPTFVYLVVLVLFANL-YSHPIQDLLPTYLKA 267 (405)
T ss_pred hhhhhHHHHHhccchhhhhhh-----------hhhhHHhhhhh--hhhhHHHHHHHHHHHHHHH-HHhhhhhhhHHHHHH
Confidence 222111111111100000000 00000111111 1111111 11111111111 233445566666654
Q ss_pred -cCCCchhHHHHHHHHH----------------HHHH-HHHHHHHH---HHHHHHhccCCCCCCchhHHHHHHHHHHHHH
Q 042030 156 -ADLSTDIGSISMAIIQ----------------ASTI-WMGLSLTI---IALAFGLQDTHLWNEATPVLVYVGIMGFSIA 214 (322)
Q Consensus 156 -~g~~~~~~~~~~~~~~----------------~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (322)
.|++....+.+..... .+.. ...++... ......... ...+...+..++ ..+
T Consensus 268 ~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~-~~~ 340 (405)
T TIGR00891 268 DLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIG------ANVAVLGLGLFF-QQM 340 (405)
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhC------CchHHHHHHHHH-HHH
Confidence 5887765444333222 0000 01111111 111111111 111222222222 222
Q ss_pred HhhcccchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH-hh
Q 042030 215 FALGMAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTME-WS 265 (322)
Q Consensus 215 ~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~ 265 (322)
...+..+....+++|.+|++.|+++.|+.+...++|+.++|.+.+.+.+ .+
T Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g 392 (405)
T TIGR00891 341 LVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLD 392 (405)
T ss_pred HHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3334445567888999999999999999999999999999999999998 44
No 29
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=99.70 E-value=6.7e-16 Score=135.00 Aligned_cols=258 Identities=14% Similarity=0.120 Sum_probs=137.6
Q ss_pred eeeeeecCCCCchhhHHHHHHHHHHHHHHHHHhhhhh-------hhHHHHHHhhHHHHHHHH-HhhccCCChHHHHhcCC
Q 042030 4 IYIAEITPKNIRGAFTATSQFLIVSGMSVMYLVGTIV-------SWRALALIAAVPCLLQVV-GLFFIPESPRWLAKIGK 75 (322)
Q Consensus 4 ~~i~e~~~~~~rg~~~~~~~~~~~~G~~l~~~~~~~~-------~Wr~~f~~~~~~~~i~~~-~~~~lpesp~~l~~~~~ 75 (322)
.+++|++|+++||+++++++.+..+|.++++.+.... +||..|.+.++++++..+ .+++.+|+|+.. +.
T Consensus 145 ~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~---~~ 221 (467)
T PRK09556 145 STITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIALIIGFIGLRYGSDSPEEL---GW 221 (467)
T ss_pred HHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHhCCCChhhc---CC
Confidence 5688999999999999999999999999988776422 599999888887776644 455667777521 11
Q ss_pred HHHHHHHHHHHhCCchhhhhhHHHHHHhhhhcccccccch-hhhcchhhHHHHHHHHHHHhhhhccchhhhHhcHHHHHH
Q 042030 76 EKELETTLQCLRGKTADISMESADIRDCTQTFEKDSKAGI-FDLFQRRYAYSLSVGVGLMVMQPFVGSAAIAYYASYIIA 154 (322)
Q Consensus 76 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (322)
.++.+ . ..... +.++ +..+.++......+ +..++++..+..... .++....++....|.|.+++
T Consensus 222 ~~~~~-~---~~~~~-~~~~------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----~~~~~~~~~~~~~~~p~yl~ 286 (467)
T PRK09556 222 GKAEE-I---FGEPI-SEED------KETESTDMTKWQIFVEYVLKNPVIWLLCFA----NIFLYIVRIGIDNWSPVYAF 286 (467)
T ss_pred CChhh-c---ccCcc-chhh------hccccccCcHHHHHHHHHHcChHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 11100 0 00000 0000 00000000000011 124444443333222 22222235567888998886
Q ss_pred H-cCCCchhHHHHHHHHH----------------HH---HHHHHHHHHHHHH-HHHhccCCCCCCchhHHHHHHHHHHHH
Q 042030 155 A-ADLSTDIGSISMAIIQ----------------AS---TIWMGLSLTIIAL-AFGLQDTHLWNEATPVLVYVGIMGFSI 213 (322)
Q Consensus 155 ~-~g~~~~~~~~~~~~~~----------------~~---~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (322)
+ .|++...++....... .. ...........+. ....... .+.....+..+..+
T Consensus 287 ~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~G- 360 (467)
T PRK09556 287 QELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQHA-----TSEYMYLASLFALG- 360 (467)
T ss_pred HccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhc-----CcHHHHHHHHHHHH-
Confidence 5 5888765444433222 00 0000001111111 1111110 11222222222222
Q ss_pred HHhhcccchhhhhhccccCccccchhHHHHHHHHHH-HHHHHHHHHHHHHH-------------hhhcchhHHHHHHHHH
Q 042030 214 AFALGMAGLPSVIMAEIFPINIKGSAGSLVILLHNC-SNWIVTYTFHFTME-------------WSRTGTFSIFWVICAA 279 (322)
Q Consensus 214 ~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~-g~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~ 279 (322)
.+..+..........|.+|++.|+++.|+.+..+++ |++++|.+.+.+.+ .++...|.++.++.++
T Consensus 361 ~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~ 440 (467)
T PRK09556 361 FLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIG 440 (467)
T ss_pred HHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHH
Confidence 122222222245677999999999999999999997 77999999999888 2455666666666666
Q ss_pred HHHHHH
Q 042030 280 AVLFVA 285 (322)
Q Consensus 280 ~~~~~~ 285 (322)
+.+...
T Consensus 441 ~~~~~~ 446 (467)
T PRK09556 441 CICLMA 446 (467)
T ss_pred HHHHHH
Confidence 655443
No 30
>TIGR00895 2A0115 benzoate transport.
Probab=99.69 E-value=1.2e-15 Score=130.82 Aligned_cols=247 Identities=16% Similarity=0.181 Sum_probs=138.5
Q ss_pred ceeeeeecCCCCchhhHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHhhHHHHHH-HHHhhccCCChHHHHhcCCHH
Q 042030 3 PIYIAEITPKNIRGAFTATSQFLIVSGMSVMYLVGTIV----SWRALALIAAVPCLLQ-VVGLFFIPESPRWLAKIGKEK 77 (322)
Q Consensus 3 ~~~i~e~~~~~~rg~~~~~~~~~~~~G~~l~~~~~~~~----~Wr~~f~~~~~~~~i~-~~~~~~lpesp~~l~~~~~~~ 77 (322)
.+++.|++|+++|++..++...+..+|..+++.++..+ +||+.|++.++..++. .+...++||++++..++ +.+
T Consensus 127 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 205 (398)
T TIGR00895 127 NALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSK-RPE 205 (398)
T ss_pred HHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHHHHHHhCCCCChHHHhc-CHH
Confidence 45678999999999999999999999999988887554 8999999886555544 45567799998876554 334
Q ss_pred HHHHHHHHHhCCchhhhhhHHHHHHhhhhcccccccchhhhcchhhHHHHHHHHHHHhhhhccchhhhHhcHHHHHHHcC
Q 042030 78 ELETTLQCLRGKTADISMESADIRDCTQTFEKDSKAGIFDLFQRRYAYSLSVGVGLMVMQPFVGSAAIAYYASYIIAAAD 157 (322)
Q Consensus 78 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 157 (322)
+.++..++......+.+++ +.++ .+.+++..+...+.+++++..+........ .+......+....+.|.+.++.|
T Consensus 206 ~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g 281 (398)
T TIGR00895 206 TVRRIVNAIAPQMQAEAQS--ALPE-QKATQGTKRSVFKALFQGKTARITVLLWLL-YFMLLVGVYFLTNWLPKLMVELG 281 (398)
T ss_pred HHHHHHHHHHHhccccccc--cccc-cccccchhhHHHHHHhcchhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHcC
Confidence 3333333322111100000 0000 000001111123334433333333332222 22333345667778888777778
Q ss_pred CCchhHHHHHHHHH----------------HHHHHHHHHHHH---HHHHHHhccCCCCCCchhHHHHHHHHHHHHHHhhc
Q 042030 158 LSTDIGSISMAIIQ----------------ASTIWMGLSLTI---IALAFGLQDTHLWNEATPVLVYVGIMGFSIAFALG 218 (322)
Q Consensus 158 ~~~~~~~~~~~~~~----------------~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (322)
.+....+....... .+.......... ......... ...+......++.+.+.+ .
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~g~~~~-~ 354 (398)
T TIGR00895 282 FSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTL------FSPTLLLLLGAIAGFFVN-G 354 (398)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHh------hCHHHHHHHHHHHHHHHH-H
Confidence 87664444333222 111011111111 111111101 112223333333333333 2
Q ss_pred ccchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHH
Q 042030 219 MAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFT 261 (322)
Q Consensus 219 ~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~ 261 (322)
..+..+.+..|.+|++.|+++.|+.+.+..+|..++|.+.+.+
T Consensus 355 ~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 355 GQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL 397 (398)
T ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence 3455688999999999999999999999999999999998754
No 31
>PRK03545 putative arabinose transporter; Provisional
Probab=99.69 E-value=9.1e-15 Score=125.08 Aligned_cols=237 Identities=13% Similarity=0.113 Sum_probs=139.7
Q ss_pred ceeeeeecCCCCchhhHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHhhHHHHHHHHH-hhccCCChHHHHhcCCHH
Q 042030 3 PIYIAEITPKNIRGAFTATSQFLIVSGMSVMYLVGTIV----SWRALALIAAVPCLLQVVG-LFFIPESPRWLAKIGKEK 77 (322)
Q Consensus 3 ~~~i~e~~~~~~rg~~~~~~~~~~~~G~~l~~~~~~~~----~Wr~~f~~~~~~~~i~~~~-~~~lpesp~~l~~~~~~~ 77 (322)
.+++.|++|+++|+++.++...+..+|..+++.++..+ |||+.|++.++++++..+. ..++||.|+ +++ +
T Consensus 119 ~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~----~~~-~ 193 (390)
T PRK03545 119 ASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLIKLLPLLPS----EHS-G 193 (390)
T ss_pred HHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhCCCCCC----CCc-c
Confidence 35678999999999999999999999999988877544 8999999988877766443 455777543 000 0
Q ss_pred HHHHHHHHHhCCchhhhhhHHHHHHhhhhcccccccchhhhcchhhHHHHHHHHHHHhhhhccchhhhHhcHHHHHHH-c
Q 042030 78 ELETTLQCLRGKTADISMESADIRDCTQTFEKDSKAGIFDLFQRRYAYSLSVGVGLMVMQPFVGSAAIAYYASYIIAA-A 156 (322)
Q Consensus 78 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 156 (322)
...+.++.+|++..+.......+... ..+....+.+.++++ .
T Consensus 194 ---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~ 236 (390)
T PRK03545 194 ---------------------------------SLKSLPLLFRRPALVSLYLLTVVVVT----AHFTAYSYIEPFVQQVA 236 (390)
T ss_pred ---------------------------------hHHHHHHHHhCcHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhc
Confidence 00123445555544433332222221 123334455555555 4
Q ss_pred CCCchhHHHHHHHHH----------------HHHHHHHHHHHHHHHH--HHhccCCCCCCchhHHHHHHHHHHHHHHhhc
Q 042030 157 DLSTDIGSISMAIIQ----------------ASTIWMGLSLTIIALA--FGLQDTHLWNEATPVLVYVGIMGFSIAFALG 218 (322)
Q Consensus 157 g~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (322)
|.+....+....... .+......+..+.+.. ...... .+.+.......+.+.+. ..
T Consensus 237 g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~~~~l~g~~~-~~ 310 (390)
T PRK03545 237 GLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLLIAIALLLVCLLLLLPAA-----NSEWHLSVLSIFWGIAI-MC 310 (390)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHh-----chHHHHHHHHHHHHHHH-hc
Confidence 777664444433322 1111111111111111 111111 11222223333333322 22
Q ss_pred ccchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH-hhhcchhHHHHHHHHHHHHHHHhhc
Q 042030 219 MAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTME-WSRTGTFSIFWVICAAAVLFVAFLV 288 (322)
Q Consensus 219 ~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (322)
..+.....+.|..| +.|+++.|+.+...++|..++|.+.+.+.+ .+....+...+++.+++.++.+...
T Consensus 311 ~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 380 (390)
T PRK03545 311 IGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILIF 380 (390)
T ss_pred chHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHc
Confidence 33444566777766 588999999999999999999999999998 7777778877777777776655544
No 32
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=99.68 E-value=1.9e-14 Score=118.76 Aligned_cols=237 Identities=18% Similarity=0.161 Sum_probs=139.4
Q ss_pred ceeeeeecCCCCchhhHHHHHHHHHHHHHHHHHhh----hhhhhHHHHHHhhHHHHHHHH-HhhccCCChHHHHhcCCHH
Q 042030 3 PIYIAEITPKNIRGAFTATSQFLIVSGMSVMYLVG----TIVSWRALALIAAVPCLLQVV-GLFFIPESPRWLAKIGKEK 77 (322)
Q Consensus 3 ~~~i~e~~~~~~rg~~~~~~~~~~~~G~~l~~~~~----~~~~Wr~~f~~~~~~~~i~~~-~~~~lpesp~~l~~~~~~~ 77 (322)
.++.++..||++|++++++...+..++..+|..++ ..+|||+.|++.+..+++.++ .+..+| |+ ++.+
T Consensus 123 ~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP--~~-----~~~~ 195 (394)
T COG2814 123 AALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLP--PS-----EISG 195 (394)
T ss_pred HHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC--Cc-----cCCC
Confidence 35667899999999999999999888777665554 555999999999999888865 467789 22 0000
Q ss_pred HHHHHHHHHhCCchhhhhhHHHHHHhhhhcccccccchhhhcchhhHHHHHHHHHHHhhhhccchhhhHhcH-HHHHHHc
Q 042030 78 ELETTLQCLRGKTADISMESADIRDCTQTFEKDSKAGIFDLFQRRYAYSLSVGVGLMVMQPFVGSAAIAYYA-SYIIAAA 156 (322)
Q Consensus 78 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 156 (322)
+ ++.+..+..+++|++..+..+....+... +.+....|. |.+.+..
T Consensus 196 ~-----------------------------~~~~~~~~~~~l~~p~v~~~l~~t~l~~~----g~F~~ftYi~P~L~~v~ 242 (394)
T COG2814 196 S-----------------------------LPGPLRTLLRLLRRPGVLLGLLATFLFMT----GHFALYTYIRPFLESVA 242 (394)
T ss_pred C-----------------------------CCcchhHHHHHhcCchHHHHHHHHHHHHc----chhhhHHhHHHHHHHcc
Confidence 0 00111124456666666666665554444 344444444 5555555
Q ss_pred CCCchhHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHhccCCCCCCchhHHHHHHHHHHHHHHhhc
Q 042030 157 DLSTDIGSISMAIIQ------------------ASTIWMGLSLTIIALAFGLQDTHLWNEATPVLVYVGIMGFSIAFALG 218 (322)
Q Consensus 157 g~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (322)
|++....+++....+ ...................... ...+......++++......
T Consensus 243 g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr~~~~~l~~~~~l~a~~~l~l~~~~-----~~~~~~~~~~~~wg~a~~~~ 317 (394)
T COG2814 243 GFSVSAVSLVLLAFGIAGFIGNLLGGRLADRGPRRALIAALLLLALALLALTFTG-----ASPALALALLFLWGFAFSPA 317 (394)
T ss_pred CCCHhHHHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHhc-----chHHHHHHHHHHHHHHhhhh
Confidence 988875555544443 1111111111111111111111 12233333333322222222
Q ss_pred ccchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH-hhhcchhHHHHHHHHHHHHHHHh
Q 042030 219 MAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTME-WSRTGTFSIFWVICAAAVLFVAF 286 (322)
Q Consensus 219 ~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 286 (322)
.. ......++ .-++.++.+.++.....++|..++..+.+.+.+ .++....++-+...+++.++...
T Consensus 318 ~~-~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~ 384 (394)
T COG2814 318 LQ-GLQTRLAR-LAPDAADLAGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALL 384 (394)
T ss_pred hh-HHHHHhcc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH
Confidence 11 12334445 335788999999999999999999999999999 66666666666666666665544
No 33
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=99.68 E-value=4.5e-15 Score=127.35 Aligned_cols=258 Identities=11% Similarity=0.067 Sum_probs=161.4
Q ss_pred ceeeeeecCCCCchhhHHHHHHHHHHHHHHHHHhhhhh-----hhHHHHHHhhHHHHHHHHHh-hccCCChHHHHhcCCH
Q 042030 3 PIYIAEITPKNIRGAFTATSQFLIVSGMSVMYLVGTIV-----SWRALALIAAVPCLLQVVGL-FFIPESPRWLAKIGKE 76 (322)
Q Consensus 3 ~~~i~e~~~~~~rg~~~~~~~~~~~~G~~l~~~~~~~~-----~Wr~~f~~~~~~~~i~~~~~-~~lpesp~~l~~~~~~ 76 (322)
..+.+.|.|++||++..++...+..+|.+++..+++.+ ||+++|++.++.+++..+++ ++..|+|+- +.+.
T Consensus 150 ~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~---h~~i 226 (466)
T KOG2532|consen 150 GSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPSK---HPNI 226 (466)
T ss_pred hceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCccc---CCCC
Confidence 46789999999999999999999999988887766654 89999999999999987765 557788862 2211
Q ss_pred HHHHHHHHHHhCCchhhhhhHHHHHHhhhhccc--ccccchhhhcchhhHHHHHHHHHHHhhhhccchhhhHhcHHHHHH
Q 042030 77 KELETTLQCLRGKTADISMESADIRDCTQTFEK--DSKAGIFDLFQRRYAYSLSVGVGLMVMQPFVGSAAIAYYASYIIA 154 (322)
Q Consensus 77 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (322)
. ++|.+.+++...+++. +.+.|++++++++..+..++. .+....+.+.+..|.|++++
T Consensus 227 s----------------~~El~~I~~~k~~~~~~~~~~vP~~~i~ts~~vwai~~~----~f~~~~~~~~l~~y~PtY~~ 286 (466)
T KOG2532|consen 227 S----------------EKELKYIEKGKSEAHVKKKPPVPYKAILTSPPVWAIWIS----AFGGNWGFYLLLTYLPTYLK 286 (466)
T ss_pred C----------------HHHHHHHHhcccccccCCCCCCCHHHHHcCHHHHHHHHH----HHHHHHHHHHHHHHhhHHHH
Confidence 1 1122222222222122 246799999998766655554 33333467889999999999
Q ss_pred Hc-CCCchhHHHHHHHHH--------------------------HHHHHHHHHHHHHHHHHHhccCCCCCCchhHHHHHH
Q 042030 155 AA-DLSTDIGSISMAIIQ--------------------------ASTIWMGLSLTIIALAFGLQDTHLWNEATPVLVYVG 207 (322)
Q Consensus 155 ~~-g~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (322)
+. +++....++..++.. .....-.++....++.+........ ...+..+++
T Consensus 287 ~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~~--~~~~~a~~~ 364 (466)
T KOG2532|consen 287 EVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTSD--EHRLLAVIL 364 (466)
T ss_pred HHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeecCC--CcchHHHHH
Confidence 86 898876666665554 1111222222222222222221111 112233333
Q ss_pred HHHHHHHHhhcccchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH----hhhcchhHHHHHHHHHHHHH
Q 042030 208 IMGFSIAFALGMAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTME----WSRTGTFSIFWVICAAAVLF 283 (322)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 283 (322)
+.+.....+...... +.-..+. .++.-+..+|+.+.++.+.++++|.+.+.+.. ..+...|++.+++.+++.++
T Consensus 365 l~~~~~~~g~~~~Gf-~~~~~~~-apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~ 442 (466)
T KOG2532|consen 365 LTIAIGLSGFNISGF-YKNHQDI-APQHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNII 442 (466)
T ss_pred HHHHHHHcccchhhh-Hhhhhhc-cchHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchh
Confidence 222222222211111 2223332 44566999999999999999999999988773 36677888888888888765
Q ss_pred HHhh
Q 042030 284 VAFL 287 (322)
Q Consensus 284 ~~~~ 287 (322)
..++
T Consensus 443 f~~f 446 (466)
T KOG2532|consen 443 FLFF 446 (466)
T ss_pred eeEe
Confidence 4443
No 34
>PRK11010 ampG muropeptide transporter; Validated
Probab=99.68 E-value=1e-14 Score=127.86 Aligned_cols=249 Identities=13% Similarity=0.116 Sum_probs=140.4
Q ss_pred ceeeeeecCCCCchhhHHHHHHHHHHHHHHHHHhhhh-----hhhHHHHHHhhHHHHHHHHHhhccCCChHHHHhcCCHH
Q 042030 3 PIYIAEITPKNIRGAFTATSQFLIVSGMSVMYLVGTI-----VSWRALALIAAVPCLLQVVGLFFIPESPRWLAKIGKEK 77 (322)
Q Consensus 3 ~~~i~e~~~~~~rg~~~~~~~~~~~~G~~l~~~~~~~-----~~Wr~~f~~~~~~~~i~~~~~~~lpesp~~l~~~~~~~ 77 (322)
.+++.|++|+++||+..++.+.+..+|.++++.++.. .|||+.|++.++..++..+..+++||+++.. .+++
T Consensus 129 ~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~~~~e~~~~~---~~~~ 205 (491)
T PRK11010 129 DAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIATLLAPEPTDTI---PVPK 205 (491)
T ss_pred HHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhcCCCcccc---cccc
Confidence 3567899999999999999999999999988766543 4899999998888777766666688875410 0000
Q ss_pred HHHHHHHHHhCCchhhhhhHHHHHHhhhhcccccccchhhhcchhhHHHHHHHHHHHhhhhccchhhhHhcHHHH-HHHc
Q 042030 78 ELETTLQCLRGKTADISMESADIRDCTQTFEKDSKAGIFDLFQRRYAYSLSVGVGLMVMQPFVGSAAIAYYASYI-IAAA 156 (322)
Q Consensus 78 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 156 (322)
+.+ +....+++++++++..+.......+... +......+.+.+ .+..
T Consensus 206 ~~~----------------------------~~~~~~l~~~~~~~~~~~~ll~~~l~~~----~~~~~~~~~~~~l~~~~ 253 (491)
T PRK11010 206 TLE----------------------------QAVVAPLRDFFGRNNAWLILLLIVLYKL----GDAFAMSLTTTFLIRGV 253 (491)
T ss_pred chh----------------------------hhHHHHHHHHHcCcCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhc
Confidence 000 0011235556655444433333222211 122333344444 4556
Q ss_pred CCCchhHHHHHH-HH--H--------------HHH-HHHHHHHHH--H-HHHHHhccCCCCCCchhHHHHHHHHHHHHHH
Q 042030 157 DLSTDIGSISMA-II--Q--------------AST-IWMGLSLTI--I-ALAFGLQDTHLWNEATPVLVYVGIMGFSIAF 215 (322)
Q Consensus 157 g~~~~~~~~~~~-~~--~--------------~~~-~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (322)
|++....+.... .. . .+. ....+..++ + ...+...... . .+.+......++...++
T Consensus 254 G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~--~-~~~~~l~~~~~l~~~~~ 330 (491)
T PRK11010 254 GFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSIT--D-KNLYSMGAAVFFENLCG 330 (491)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc--c-ccHHHHHHHHHHHHHHH
Confidence 888775544432 11 1 111 011111111 1 1111100000 0 11122222222222222
Q ss_pred hhcccchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH-hhhcchhHHHHHHHHHHHHHHHhhccCC
Q 042030 216 ALGMAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTME-WSRTGTFSIFWVICAAAVLFVAFLVPET 291 (322)
Q Consensus 216 ~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~et 291 (322)
+.+. +..+++..+..|++.+++..|+.+....+|..+++.+.+.+.+ .++...|.+.+++++++.+..+. .+++
T Consensus 331 g~~~-~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~-~~~~ 405 (491)
T PRK11010 331 GMGT-AAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLV-CRQT 405 (491)
T ss_pred HHHH-HHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH-HHhc
Confidence 3222 2336778889999999999999999999999988889998888 67666677777777666554443 4443
No 35
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=99.66 E-value=2.2e-14 Score=122.75 Aligned_cols=222 Identities=19% Similarity=0.272 Sum_probs=127.7
Q ss_pred ceeeeeecCCCCchhhHHHHHHHHHHHHHHHHHhhh------------hhhhHHHHHHhhHHHHHHHHHhhccCCChHHH
Q 042030 3 PIYIAEITPKNIRGAFTATSQFLIVSGMSVMYLVGT------------IVSWRALALIAAVPCLLQVVGLFFIPESPRWL 70 (322)
Q Consensus 3 ~~~i~e~~~~~~rg~~~~~~~~~~~~G~~l~~~~~~------------~~~Wr~~f~~~~~~~~i~~~~~~~lpesp~~l 70 (322)
+.+++|++|+++|++..+..+.+..+|..+++.++. ..+||+.|++.+++.++..+....+||+|++.
T Consensus 118 ~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (394)
T TIGR00883 118 ALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGLYLRRNLEETPVFE 197 (394)
T ss_pred HHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHHHHHHhcCCChhHH
Confidence 467899999999999999999999999998887653 23799999988877776666667788887632
Q ss_pred HhcCCHHHHHHHHHHHhCCchhhhhhHHHHHHhhhhcccccccchhhhcchhhHHHHHHHHHHHhhhhccchhhhHhcHH
Q 042030 71 AKIGKEKELETTLQCLRGKTADISMESADIRDCTQTFEKDSKAGIFDLFQRRYAYSLSVGVGLMVMQPFVGSAAIAYYAS 150 (322)
Q Consensus 71 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (322)
.++++ ++..+.+.++.++++. ++.........+ .....+....+.|
T Consensus 198 ~~~~~--------------------------------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~ 243 (394)
T TIGR00883 198 KAQEK--------------------------------HKKKRGPIRETLTKHR-KPFLLGLGLVIA-TTTTFYLITTYLP 243 (394)
T ss_pred HHHhc--------------------------------cccccCCHHHHHHhch-HHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 11100 0012234455554433 122222222222 2223556667788
Q ss_pred HHHH-HcCCCchhHHHHHHHHH----------------HH----HHHHHHHHHHHH--HHHHhccCCCCCCchhHHHHHH
Q 042030 151 YIIA-AADLSTDIGSISMAIIQ----------------AS----TIWMGLSLTIIA--LAFGLQDTHLWNEATPVLVYVG 207 (322)
Q Consensus 151 ~~~~-~~g~~~~~~~~~~~~~~----------------~~----~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 207 (322)
.+++ ..|.+....+....... .+ ...........+ ........ ...+.....
T Consensus 244 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 318 (394)
T TIGR00883 244 TYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDS-----GSFTLFFFL 318 (394)
T ss_pred HHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcC-----CchHHHHHH
Confidence 8874 45777654433332222 10 000111111111 11111110 112222233
Q ss_pred HHHHHHHHhhcccchhhhhhccccCccccchhHHHHHHH-HHHHHHHHHHHHHHHHHh
Q 042030 208 IMGFSIAFALGMAGLPSVIMAEIFPINIKGSAGSLVILL-HNCSNWIVTYTFHFTMEW 264 (322)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~-~~~g~~~~~~~~~~~~~~ 264 (322)
..+...+.+. ..+....+.+|.+|++.|+++.++.+.. ..+|..++|.+.+.+.+.
T Consensus 319 ~~~~g~~~~~-~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~ 375 (394)
T TIGR00883 319 VLGLALIGGM-YTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAM 375 (394)
T ss_pred HHHHHHHHHH-HhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHH
Confidence 3333333322 3445588899999999999999986544 557888999999998883
No 36
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=99.65 E-value=1.1e-14 Score=127.52 Aligned_cols=246 Identities=15% Similarity=0.081 Sum_probs=124.6
Q ss_pred eeeeeecCCCCchhhHHHHHHHHHHHHHHH----HHhhh---------hhhhHHHHHHhhHHHHHHHHHhhcc-CCChHH
Q 042030 4 IYIAEITPKNIRGAFTATSQFLIVSGMSVM----YLVGT---------IVSWRALALIAAVPCLLQVVGLFFI-PESPRW 69 (322)
Q Consensus 4 ~~i~e~~~~~~rg~~~~~~~~~~~~G~~l~----~~~~~---------~~~Wr~~f~~~~~~~~i~~~~~~~l-pesp~~ 69 (322)
.+++|++|+++||++.++...+..+|..++ +.+.. ..|||+.|++.++++++..+..+++ +|.|+
T Consensus 146 ~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~~~~p~- 224 (476)
T PLN00028 146 YWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLTLGQDLPD- 224 (476)
T ss_pred HHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHcCcCCC-
Confidence 357899999999999999876555555544 33322 1379999999888887765554444 44442
Q ss_pred HHhcCCHHHHHHHHHHHhCCchhhhhhHHHHHHhhhhcccccccchhhhcchhhHHHHHHHHHHHhhhhccchhhhHhcH
Q 042030 70 LAKIGKEKELETTLQCLRGKTADISMESADIRDCTQTFEKDSKAGIFDLFQRRYAYSLSVGVGLMVMQPFVGSAAIAYYA 149 (322)
Q Consensus 70 l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (322)
++.++.+ + + .+.++.+....+++.++++..+...... +......+.+..+.
T Consensus 225 ----~~~~~~~----~---~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 275 (476)
T PLN00028 225 ----GNYRELK----K---S--------------GTMPKDSFSKVLRYGVTNYRTWILALTY----GYSFGVELTMDNII 275 (476)
T ss_pred ----CchhhHH----h---c--------------CccccccHHHHHHHHHcCchhHHHHHHH----HHHHHHHHHHHhHH
Confidence 1111000 0 0 0000000011233444443333322221 11222234456667
Q ss_pred HHHHHH-cCCCchhHHHHHHHHH----------------HH-------H-HHHHHHHHHHHHHHHhccCCCCCCchhHHH
Q 042030 150 SYIIAA-ADLSTDIGSISMAIIQ----------------AS-------T-IWMGLSLTIIALAFGLQDTHLWNEATPVLV 204 (322)
Q Consensus 150 ~~~~~~-~g~~~~~~~~~~~~~~----------------~~-------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (322)
|.++.+ .|++...++....+.. .. . ....+...+.++........ ......
T Consensus 276 p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~----~~~~~~ 351 (476)
T PLN00028 276 AEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRA----NSLGAA 351 (476)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhccc----chHHHH
Confidence 777654 4888765544443322 11 0 11111111111111111110 112222
Q ss_pred HHHHHHHHHHHhhcccchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH-hhhcchhHHHHHHHHHHHHH
Q 042030 205 YVGIMGFSIAFALGMAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTME-WSRTGTFSIFWVICAAAVLF 283 (322)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 283 (322)
+..+.++..+.... .+..+.+.++..| +.|+++.|+.+..+++|++++|.+.+ ..+ .++...|.+.+++.++++++
T Consensus 352 ~~~~~l~~~~~~~~-~~~~~~~~~~~~~-~~~g~~~g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~ 428 (476)
T PLN00028 352 IVVMILFSIFVQAA-CGATFGIVPFVSR-RSLGVISGLTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMIIACTLP 428 (476)
T ss_pred HHHHHHHHHHHHHh-hhhhcccCcccCh-hhchhhhhhhhccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHHH
Confidence 22222222222222 2233566677654 68999999999888889988888765 222 34667788887777777665
Q ss_pred HHh
Q 042030 284 VAF 286 (322)
Q Consensus 284 ~~~ 286 (322)
.++
T Consensus 429 ~~~ 431 (476)
T PLN00028 429 VAF 431 (476)
T ss_pred HHh
Confidence 544
No 37
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=99.64 E-value=1.2e-15 Score=131.18 Aligned_cols=139 Identities=17% Similarity=0.200 Sum_probs=89.6
Q ss_pred eeeeeecCCCCchhhHHHHHHHHHHHHHHHHHhhhhh----------hhHHHHHHhhHHHHHHHHH-hhccCCChH--HH
Q 042030 4 IYIAEITPKNIRGAFTATSQFLIVSGMSVMYLVGTIV----------SWRALALIAAVPCLLQVVG-LFFIPESPR--WL 70 (322)
Q Consensus 4 ~~i~e~~~~~~rg~~~~~~~~~~~~G~~l~~~~~~~~----------~Wr~~f~~~~~~~~i~~~~-~~~lpesp~--~l 70 (322)
.+++-|+.+++||+.++++.....+|.++|.++++.+ ||||.|++.+++.++..++ ++++|+.|. |.
T Consensus 157 ~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~~~~f 236 (495)
T KOG2533|consen 157 AILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPSKAWF 236 (495)
T ss_pred HHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCChhhccc
Confidence 4567899999999999999999999999998888772 8999999999988887654 678999997 22
Q ss_pred HhcCCHHHHHHHHHHHhCCchhhhhhHHHHHHhhhhcccccccchhhhcchhhHHHHHHHHHHHhhhhccchhhhHhcHH
Q 042030 71 AKIGKEKELETTLQCLRGKTADISMESADIRDCTQTFEKDSKAGIFDLFQRRYAYSLSVGVGLMVMQPFVGSAAIAYYAS 150 (322)
Q Consensus 71 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (322)
..+.+.+ -..++.+..+ ....+++.++..+++.++++..+...+.. ++.....+.+.+|+|
T Consensus 237 l~~~ek~---~~~~~~~~~~------------~~~~~~~~~~~~~~~a~~dp~vw~~~l~~----~~~~lv~~~~~~~lp 297 (495)
T KOG2533|consen 237 LTDEEKE---LVVERLRESP------------SGGIENKFKWKGFKEALKDPGVWPFSLCY----FFLKLVNYGFSYWLP 297 (495)
T ss_pred cchHHHH---HHHHHHHhcc------------CCCcccccCHHHHHHHHhchhHHHHHHHH----HHHhhccccHHHHHH
Confidence 1111111 0011111110 00001113444566677766555544432 223334678899999
Q ss_pred HHHHHc-CCCch
Q 042030 151 YIIAAA-DLSTD 161 (322)
Q Consensus 151 ~~~~~~-g~~~~ 161 (322)
.++++. |++..
T Consensus 298 l~l~~~~~~s~~ 309 (495)
T KOG2533|consen 298 LYLKSNGGYSEL 309 (495)
T ss_pred HHHHcCCCcChH
Confidence 999983 56544
No 38
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=99.63 E-value=2.4e-15 Score=130.88 Aligned_cols=256 Identities=16% Similarity=0.092 Sum_probs=134.0
Q ss_pred eeeeecCCCCchhhHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHhhHHHHHHHHHhhc-cCCChHHHHhcCCHHHH
Q 042030 5 YIAEITPKNIRGAFTATSQFLIVSGMSVMYLVGTIV----SWRALALIAAVPCLLQVVGLFF-IPESPRWLAKIGKEKEL 79 (322)
Q Consensus 5 ~i~e~~~~~~rg~~~~~~~~~~~~G~~l~~~~~~~~----~Wr~~f~~~~~~~~i~~~~~~~-lpesp~~l~~~~~~~~a 79 (322)
++.|+++ ++|+++.++.+.+..+|..+++.++..+ |||+.|++.+++.++..+..++ .++.++. .+.+.++.
T Consensus 132 ~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~~~~~~~~~v~~~~~~~~~~~~--~~~~~~~~ 208 (455)
T TIGR00892 132 MLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLILGGLLLHCCVCGALMRPVGPSQ--RVSKSKSK 208 (455)
T ss_pred HHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCCCCccc--cccccccc
Confidence 4567775 7899999999999999888887776544 8999999988877765544333 3332210 00000000
Q ss_pred HHHHHHHhCCchhhhhhHHHHHHhhhhcccccccchhhhcchhhHHHHHHHHHHHhhhhccchhhhHhcHHHHHHHcCCC
Q 042030 80 ETTLQCLRGKTADISMESADIRDCTQTFEKDSKAGIFDLFQRRYAYSLSVGVGLMVMQPFVGSAAIAYYASYIIAAADLS 159 (322)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 159 (322)
+....++ +.++ .+..... ++..+....++++++..+.......+.. .+++....+.|.+.++.|++
T Consensus 209 ----~~~~~~~-~~~~----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~l~~~~~~~g~s 274 (455)
T TIGR00892 209 ----EGLPPDG-STKK----LSKKSTA-EKINRFLDFSLFTHRGFLVYLSGNVIMF----LGFFAPIIFLVPYAKDKGVD 274 (455)
T ss_pred ----ccCCCCC-cccc----ccccchh-hhhhhhcchHHhcCchHHHHHHHHHHHH----HHccchHHHHHHHHHHcCCC
Confidence 0000000 0000 0000000 0000111123555554443333222222 22344556777777777887
Q ss_pred chhHHHHHHHHH------------HH-------H--HHHHHHHHHHHHHHHhccCCCCCCchhHHHHHHHHHHHHHHhhc
Q 042030 160 TDIGSISMAIIQ------------AS-------T--IWMGLSLTIIALAFGLQDTHLWNEATPVLVYVGIMGFSIAFALG 218 (322)
Q Consensus 160 ~~~~~~~~~~~~------------~~-------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (322)
....+.+.++.. .. . .....+.+..+......... .+.+..++...+++.+.+ .
T Consensus 275 ~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~----~~~~~~~i~~~~~G~~~g-~ 349 (455)
T TIGR00892 275 EYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALA----GDYTGLVIYCIFFGLSFG-S 349 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHh----chHHHHHHHHHHHHHHhc-h
Confidence 765555544333 00 0 00111111111111111100 112322333333333332 2
Q ss_pred ccchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH-h-hhcchhHHHHHHHHHHHH
Q 042030 219 MAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTME-W-SRTGTFSIFWVICAAAVL 282 (322)
Q Consensus 219 ~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~ 282 (322)
..+....++.|.+|++.++++.|+.+....+|++++|.+.+.+.+ . ++...+.+.+++.+++++
T Consensus 350 ~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~ 415 (455)
T TIGR00892 350 VGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGL 415 (455)
T ss_pred HHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHH
Confidence 344557788899999999999999999999999999999998887 4 355666666665555544
No 39
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=99.63 E-value=3.6e-15 Score=126.97 Aligned_cols=242 Identities=13% Similarity=0.180 Sum_probs=130.9
Q ss_pred ceeeeeecCCCCchhhHHHHHHHHHHHHHHHH-Hhhhh----hhhHHHHHHhhHHHHHHH-HHhhccCCChHHHHhcCCH
Q 042030 3 PIYIAEITPKNIRGAFTATSQFLIVSGMSVMY-LVGTI----VSWRALALIAAVPCLLQV-VGLFFIPESPRWLAKIGKE 76 (322)
Q Consensus 3 ~~~i~e~~~~~~rg~~~~~~~~~~~~G~~l~~-~~~~~----~~Wr~~f~~~~~~~~i~~-~~~~~lpesp~~l~~~~~~ 76 (322)
.+++.|++|+++|++..++.+.+..+|..+++ .++.. .+||+.|++.++..++.. +..+++||+|+....+.++
T Consensus 105 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (379)
T TIGR00881 105 GRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIVSLICFLLLRDSPQSCGLPPAE 184 (379)
T ss_pred HHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHheeeCCCccccccCccc
Confidence 45788999999999999999999999998888 34433 389999998887766654 4456778876521100000
Q ss_pred HHHHHHHHHHhCCchhhhhhHHHHHHhhhhcccccccchhhhcchhhHHHHHHHHHHHhhhhccchhhhHhcHHHHHHH-
Q 042030 77 KELETTLQCLRGKTADISMESADIRDCTQTFEKDSKAGIFDLFQRRYAYSLSVGVGLMVMQPFVGSAAIAYYASYIIAA- 155 (322)
Q Consensus 77 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 155 (322)
++ .+ + +.++.++..+++.+..+...+.+++++..+.......+.. ........+.|.++++
T Consensus 185 ~~----------~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 246 (379)
T TIGR00881 185 EM----------PN-E---EPDGDAEKKEEELTKKQIFLQYVLLNKVLWYISLGYVFVY----VVRTGILDWSPLYLTQE 246 (379)
T ss_pred cC----------cc-c---ccccccccccccccchHHHHHHHHhcchHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 00 00 0 0000000000001111223445555554444333322222 2345566677777765
Q ss_pred cCCCchhHHHHHHHHH------------H-H--------HHH-HHHHHHHHHHHHHhccCCCCCCchhHHHHHHHHHHHH
Q 042030 156 ADLSTDIGSISMAIIQ------------A-S--------TIW-MGLSLTIIALAFGLQDTHLWNEATPVLVYVGIMGFSI 213 (322)
Q Consensus 156 ~g~~~~~~~~~~~~~~------------~-~--------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (322)
.|++....+....... . . ... ........+....... ............+. ..
T Consensus 247 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~-~g 321 (379)
T TIGR00881 247 KGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLN----PAANPLMDLICLFA-LG 321 (379)
T ss_pred hCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhcC----cchhHHHHHHHHHH-HH
Confidence 4887665544443332 0 0 000 0001111111111110 00111222222222 22
Q ss_pred HHhhcccchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH-hhhc
Q 042030 214 AFALGMAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTME-WSRT 267 (322)
Q Consensus 214 ~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~ 267 (322)
.+..+..+....+..|.+|++.|+++.|+.+....+|+.++|.+.+.+.+ .++.
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~ 376 (379)
T TIGR00881 322 FLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFGWA 376 (379)
T ss_pred HHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhccc
Confidence 22333444456788999999999999999999999999999999999888 4543
No 40
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=99.61 E-value=1.8e-13 Score=117.06 Aligned_cols=243 Identities=9% Similarity=0.050 Sum_probs=133.7
Q ss_pred ceeeeeecCCCCchhhHHHHHHHHHHHHHHHHHhhhhh-----hhHHHHHHhhHHHHHHHHHhhcc-CCChHHHHhcCCH
Q 042030 3 PIYIAEITPKNIRGAFTATSQFLIVSGMSVMYLVGTIV-----SWRALALIAAVPCLLQVVGLFFI-PESPRWLAKIGKE 76 (322)
Q Consensus 3 ~~~i~e~~~~~~rg~~~~~~~~~~~~G~~l~~~~~~~~-----~Wr~~f~~~~~~~~i~~~~~~~l-pesp~~l~~~~~~ 76 (322)
+.++.|++| ++|+++++.+..+...|..+++.++..+ +||+.+.+.+++.++..+.+++. ++.|+ .
T Consensus 119 ~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~ 190 (393)
T PRK09705 119 PSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALPAVVALFAWWWQSAREVA-------S 190 (393)
T ss_pred hHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhcCCCc-------c
Confidence 345677876 7899999999988877777777766543 79998877666655443333222 22111 0
Q ss_pred HHHHHHHHHHhCCchhhhhhHHHHHHhhhhcccccccchhhhcchhhHHHHHHHHHHHhhhhccchhhhHhcHHHHHHHc
Q 042030 77 KELETTLQCLRGKTADISMESADIRDCTQTFEKDSKAGIFDLFQRRYAYSLSVGVGLMVMQPFVGSAAIAYYASYIIAAA 156 (322)
Q Consensus 77 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (322)
++ + ++...++.++++..+...... .....+++....+.|.++++.
T Consensus 191 ~~------------------------------~-~~~~~~~~l~~~~~~~l~~~~----~~~~~~~~~~~~~lp~~l~~~ 235 (393)
T PRK09705 191 SH------------------------------K-TTTTPVRVVFTPRAWTLGVYF----GLINGGYASLIAWLPAFYIEI 235 (393)
T ss_pred cc------------------------------C-CCcCCcccccCHhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHc
Confidence 00 0 000112233333333322221 112234567778888888888
Q ss_pred CCCchhHHHHHHHHH----------------HH---HHHHHHHHHHHHHHHHhccCCCCCCchhHHHHHHHHHHHHHHhh
Q 042030 157 DLSTDIGSISMAIIQ----------------AS---TIWMGLSLTIIALAFGLQDTHLWNEATPVLVYVGIMGFSIAFAL 217 (322)
Q Consensus 157 g~~~~~~~~~~~~~~----------------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (322)
|.+....+...++.. .+ .......+...+......... . ..... ..+.+.+.+
T Consensus 236 g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~----~-~~~~~--~~l~g~g~g- 307 (393)
T PRK09705 236 GASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPL----Q-LPVLW--AMVCGLGLG- 307 (393)
T ss_pred CCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccc----h-HHHHH--HHHHHHhcc-
Confidence 887765544443333 00 111111111112111111100 1 11111 111222222
Q ss_pred cccchhhhhhcccc-CccccchhHHHHHHHHHHHHHHHHHHHHHHHH-hh-hcchhHHHHHHHHHHHHHHHhhccCCCCC
Q 042030 218 GMAGLPSVIMAEIF-PINIKGSAGSLVILLHNCSNWIVTYTFHFTME-WS-RTGTFSIFWVICAAAVLFVAFLVPETKGR 294 (322)
Q Consensus 218 ~~~~~~~~~~~e~~-p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~et~~~ 294 (322)
+..+.......+.+ |++.|++..|+.+..+++++.++|.+.+++.+ .+ +...+.+.++++++..+..+.+.|||+++
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (393)
T PRK09705 308 GAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAPARFPQ 387 (393)
T ss_pred chHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 22344444555666 46789999999999999999999999999999 44 44555666666666666667788998776
Q ss_pred Ch
Q 042030 295 HS 296 (322)
Q Consensus 295 ~~ 296 (322)
..
T Consensus 388 ~~ 389 (393)
T PRK09705 388 LW 389 (393)
T ss_pred hh
Confidence 54
No 41
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=99.58 E-value=7.1e-13 Score=113.37 Aligned_cols=230 Identities=14% Similarity=0.121 Sum_probs=128.0
Q ss_pred ceeeeeecCCCCchhhHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHhhHHHHHHHHH-hhccCCChHHHHhcCCHH
Q 042030 3 PIYIAEITPKNIRGAFTATSQFLIVSGMSVMYLVGTIV----SWRALALIAAVPCLLQVVG-LFFIPESPRWLAKIGKEK 77 (322)
Q Consensus 3 ~~~i~e~~~~~~rg~~~~~~~~~~~~G~~l~~~~~~~~----~Wr~~f~~~~~~~~i~~~~-~~~lpesp~~l~~~~~~~ 77 (322)
.+++.|++|+++|+++.++...+.++|..+++.++..+ +||+.|++.++.+++..+. ...+||+|+. + +
T Consensus 130 ~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~~~~~~p~~~~~-----~-~ 203 (394)
T PRK10213 130 ASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFWIIKSLPSLPGE-----P-S 203 (394)
T ss_pred HHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHCCCCCcc-----c-c
Confidence 45678999999999999999999999988888887655 8999999988776665443 3457876421 0 0
Q ss_pred HHHHHHHHHhCCchhhhhhHHHHHHhhhhcccccccchhhhcchhhHHHHHHHHHHHhhhhccchhhhHhc-HHHHHHHc
Q 042030 78 ELETTLQCLRGKTADISMESADIRDCTQTFEKDSKAGIFDLFQRRYAYSLSVGVGLMVMQPFVGSAAIAYY-ASYIIAAA 156 (322)
Q Consensus 78 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 156 (322)
+ .+.+.++.++++..+.......+... +.+....+ .|.+.++.
T Consensus 204 ~--------------------------------~~~~~~~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~p~~~~~~ 247 (394)
T PRK10213 204 H--------------------------------QKQNTFRLLQRPGVMAGMIAIFMSFA----GQFAFFTYIRPVYMNLA 247 (394)
T ss_pred c--------------------------------chhHHHHHhcCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhc
Confidence 0 00122345555544443333222222 22333344 47777777
Q ss_pred CCCchhHHHHHHHHH----------------HHHHHHHHHHH---HHHHHHHhccCCCCCCchhHHHHHHHHHHHHHHhh
Q 042030 157 DLSTDIGSISMAIIQ----------------ASTIWMGLSLT---IIALAFGLQDTHLWNEATPVLVYVGIMGFSIAFAL 217 (322)
Q Consensus 157 g~~~~~~~~~~~~~~----------------~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (322)
|++....+....... ........... .......... ...+.......+.+.+++.
T Consensus 248 g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~~~l~~~~~~~~~~~~~l~~~~------~~~~~~~~~~~l~G~~~~~ 321 (394)
T PRK10213 248 GFGVDGLTLVLLSFGIASFVGTSLSSFILKRSVKLALAGAPLVLAVSALVLTLWG------SDKIVATGVAIIWGLTFAL 321 (394)
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHh------hhHHHHHHHHHHHHHHHHh
Confidence 888764444333222 00010111111 1111111111 1123333333333434333
Q ss_pred cccchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH-hhhcchhHHHHHHHHHHHH
Q 042030 218 GMAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTME-WSRTGTFSIFWVICAAAVL 282 (322)
Q Consensus 218 ~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 282 (322)
..+....++.+..|+ .++...+......++|..+++.+.+.+.+ .+....+...+++..+.++
T Consensus 322 -~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~~~~~ 385 (394)
T PRK10213 322 -VPVGWSTWITRSLAD-QAEKAGSIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLMLLTAL 385 (394)
T ss_pred -hhHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHHHH
Confidence 233335567777774 45677777777888999999999999998 5555555554444444433
No 42
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=99.57 E-value=2.4e-13 Score=115.64 Aligned_cols=235 Identities=13% Similarity=0.065 Sum_probs=126.3
Q ss_pred eeeeecCCCCchhhHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHhhHHHHHHHHH-hhccCCChHHHHhcCCHHHH
Q 042030 5 YIAEITPKNIRGAFTATSQFLIVSGMSVMYLVGTIV----SWRALALIAAVPCLLQVVG-LFFIPESPRWLAKIGKEKEL 79 (322)
Q Consensus 5 ~i~e~~~~~~rg~~~~~~~~~~~~G~~l~~~~~~~~----~Wr~~f~~~~~~~~i~~~~-~~~lpesp~~l~~~~~~~~a 79 (322)
++.|++| ++|+++.++...+..+|..+++.+...+ +||+.|++.+++.++..+. .++++|+|+- +.++++
T Consensus 115 ~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~- 189 (377)
T TIGR00890 115 TAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIFLLVIVLGAFLIGYPPGQ---LIKTNI- 189 (377)
T ss_pred HHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHheecCchh---ccccCc-
Confidence 3456665 6799999999999999887654444332 7999999988887776544 4556654431 000000
Q ss_pred HHHHHHHhCCchhhhhhHHHHHHhhhhcccccccchhhhcchhhHHHHHHHHHHHhhhhccchhhhHhcHHHHHHHcCCC
Q 042030 80 ETTLQCLRGKTADISMESADIRDCTQTFEKDSKAGIFDLFQRRYAYSLSVGVGLMVMQPFVGSAAIAYYASYIIAAADLS 159 (322)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 159 (322)
+ .+.++.+.++.++++..+..........+ .......+.+.+.++.|.+
T Consensus 190 ------------~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 238 (377)
T TIGR00890 190 ------------E---------------VSVKDYTVWEMLRTPQFWVLYLSFFLNAV----SGLLLIGLYKPYGQSLGLS 238 (377)
T ss_pred ------------c---------------cchhhhhHHHHHcCccHHHHHHHHHHHhH----HHHHHHHHHHHHHHHcCCC
Confidence 0 00011123445555544433332222211 1222334445556667776
Q ss_pred chhHHHHHHHHH----------------HHHH-HHHHHHHH--HHHHHHhccCCCCCCchhHHHHHHHHHHHHHHhhccc
Q 042030 160 TDIGSISMAIIQ----------------ASTI-WMGLSLTI--IALAFGLQDTHLWNEATPVLVYVGIMGFSIAFALGMA 220 (322)
Q Consensus 160 ~~~~~~~~~~~~----------------~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (322)
............ .+.. ...++... .+......... ...........+...+.+ ...
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~g~~~g-~~~ 313 (377)
T TIGR00890 239 DGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPM----LNDVLFLATVALVFFTWG-GTI 313 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHccc----chhHHHHHHHHHHHHHhc-cch
Confidence 654333333222 1100 01111111 11111111110 111111122222222222 223
Q ss_pred chhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH-hhhcchhHHHHHHHHHH
Q 042030 221 GLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTME-WSRTGTFSIFWVICAAA 280 (322)
Q Consensus 221 ~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 280 (322)
+....+..|.+|++.|+++.|+.+....+|+.++|.+.+.+.+ .++...+.+.+++.+++
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~ 374 (377)
T TIGR00890 314 SLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTS 374 (377)
T ss_pred hccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHh
Confidence 4446788999999999999999999999999999999998887 66666676666655544
No 43
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=99.57 E-value=7e-13 Score=113.90 Aligned_cols=240 Identities=16% Similarity=0.114 Sum_probs=126.8
Q ss_pred eeeeeecCCCCchhhHHHHHHHHHHHHHHHHHhhhh-----hhhHHHHHHhhHHHHHHHHHhhccCCChHHHHhcCCHHH
Q 042030 4 IYIAEITPKNIRGAFTATSQFLIVSGMSVMYLVGTI-----VSWRALALIAAVPCLLQVVGLFFIPESPRWLAKIGKEKE 78 (322)
Q Consensus 4 ~~i~e~~~~~~rg~~~~~~~~~~~~G~~l~~~~~~~-----~~Wr~~f~~~~~~~~i~~~~~~~lpesp~~l~~~~~~~~ 78 (322)
+++.|+.|+++|+++.++...+..+|.++++.++.. .|||..|++.++..++..+..+++||+++. +++.++
T Consensus 117 al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l~~~~~~e~~~~---~~~~~~ 193 (402)
T PRK11902 117 AYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGALTTLWAPEPEVP---ARPPRS 193 (402)
T ss_pred HHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhcCCCccc---ccccch
Confidence 567899999999999999999999999998876543 389999999888776665556678886541 111000
Q ss_pred HHHHHHHHhCCchhhhhhHHHHHHhhhhcccccccchhhhcchhhHHHHHHHHHHHhhhhccchhhhHhcHHHHHHHcCC
Q 042030 79 LETTLQCLRGKTADISMESADIRDCTQTFEKDSKAGIFDLFQRRYAYSLSVGVGLMVMQPFVGSAAIAYYASYIIAAADL 158 (322)
Q Consensus 79 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 158 (322)
.+ ++.+.++++++|++..+.......+...... .......+.+.++.|+
T Consensus 194 ~~----------------------------~~~~~~~~~l~~~~~~~~~l~~~~l~~~~~~---~~~~~~~~~l~~~~G~ 242 (402)
T PRK11902 194 LG----------------------------EAVVGPLRDFFSRRGAWALLLLIVLYKLGDA---FAGSLSTTFLIRGAGF 242 (402)
T ss_pred hH----------------------------HHHHHHHHHHHhCcCHHHHHHHHHHHHhHHH---HHHHHHHHHHHHhcCC
Confidence 00 0011245667777666655544333222111 1112233445555688
Q ss_pred CchhHHHHHHHH-------H----------HHHH-HHHHHHH---HHHHHHHhccCCCCCCchhHHHHHHHHH---HHHH
Q 042030 159 STDIGSISMAII-------Q----------ASTI-WMGLSLT---IIALAFGLQDTHLWNEATPVLVYVGIMG---FSIA 214 (322)
Q Consensus 159 ~~~~~~~~~~~~-------~----------~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 214 (322)
+....+.+.+.. . .+.. ...+... +....+...... . .+.+.......+ ....
T Consensus 243 ~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~--~-~~~~~~~~~~~~~~~~~g~ 319 (402)
T PRK11902 243 SAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVT--P-KHLWTMALAIGIENLCGGM 319 (402)
T ss_pred CHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc--C-CcHHHHHHHHHHHHHHHHH
Confidence 876554443211 1 1110 0111111 111111100000 0 112222222211 1111
Q ss_pred HhhcccchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH-hhhcchhHHHHHHHHHHHHHH
Q 042030 215 FALGMAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTME-WSRTGTFSIFWVICAAAVLFV 284 (322)
Q Consensus 215 ~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 284 (322)
......+....++.+.+|.+ ..+..+....++..+++.+.+.+.+ .++...|...+++++++.++.
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~ 386 (402)
T PRK11902 320 GTAAFVALLMALCNRSFSAT----QYALLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALL 386 (402)
T ss_pred HHHHHHHHHHHhcCCCCcHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence 11122334456677776644 4455555666777766678888888 777776777777666665543
No 44
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=99.56 E-value=8.2e-13 Score=113.21 Aligned_cols=216 Identities=13% Similarity=0.072 Sum_probs=121.5
Q ss_pred eeeeeecCCCCchhhHHHHHHHHHHHHHHHHHhhhhh---hhHHHHHHhhHHHHHHHHH-hhccCCChHHHHhcCCHHHH
Q 042030 4 IYIAEITPKNIRGAFTATSQFLIVSGMSVMYLVGTIV---SWRALALIAAVPCLLQVVG-LFFIPESPRWLAKIGKEKEL 79 (322)
Q Consensus 4 ~~i~e~~~~~~rg~~~~~~~~~~~~G~~l~~~~~~~~---~Wr~~f~~~~~~~~i~~~~-~~~lpesp~~l~~~~~~~~a 79 (322)
+++.|++|+++|+++.++......+|..+++.++..+ +||+.|++.++..++..+. .+++||.+. .+.++
T Consensus 122 ~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~~~g~~~~f~~~~~~~~~~~i~~~~~~~~~~~-----~~~~~- 195 (400)
T PRK11646 122 ALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLLQYDFRLVCATGAVLFVLAAAFNAWLLPAYKL-----STVRT- 195 (400)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCCcccc-----cccch-
Confidence 4567899999999999999999999998888887655 8999999988776665433 455665311 00000
Q ss_pred HHHHHHHhCCchhhhhhHHHHHHhhhhcccccccchhhhcchhhHHHHHHHHHHHhhhhccchhhhHhcHHHHHHHcCCC
Q 042030 80 ETTLQCLRGKTADISMESADIRDCTQTFEKDSKAGIFDLFQRRYAYSLSVGVGLMVMQPFVGSAAIAYYASYIIAAADLS 159 (322)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 159 (322)
+.+.+++++++++.............. .......+.|.+.++.+.+
T Consensus 196 ------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~p~~~~~~~~~ 241 (400)
T PRK11646 196 ------------------------------PVREGMTRVLRDKRFVTYVLTLTGYYM----LAVQVMLMLPIMVNDIAGS 241 (400)
T ss_pred ------------------------------hhHHHHHHHHcCchHHHHHHHHHHHHH----HHHHHHHhhhhhHHhhcCC
Confidence 011134455555443332222111111 1222345678877776545
Q ss_pred chhHHHHHHHHH-----------------HH-HHHHHHHHHHHHHHHHhccCCCCCCchhHHHHHHHHHHHHHHhhcccc
Q 042030 160 TDIGSISMAIIQ-----------------AS-TIWMGLSLTIIALAFGLQDTHLWNEATPVLVYVGIMGFSIAFALGMAG 221 (322)
Q Consensus 160 ~~~~~~~~~~~~-----------------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (322)
+...+.+.++.. .. ......++.+.+......... ...+.......++..+.. ...|
T Consensus 242 ~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~l~~~g~~-~~~p 316 (400)
T PRK11646 242 PSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMV----SNLQQLFTLICLFYIGSI-IAEP 316 (400)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHh----hhHHHHHHHHHHHHHHHH-HHHc
Confidence 443322222111 00 001111111111111111000 111222222222222222 2334
Q ss_pred hhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042030 222 LPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTMEW 264 (322)
Q Consensus 222 ~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 264 (322)
...++..|..|++.|+++.|+.+....+|..++|.+.+.+.+.
T Consensus 317 ~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~ 359 (400)
T PRK11646 317 ARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDL 359 (400)
T ss_pred cHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHH
Confidence 5577888999999999999999999999999999999999884
No 45
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=99.56 E-value=9.5e-13 Score=113.05 Aligned_cols=74 Identities=11% Similarity=-0.015 Sum_probs=55.9
Q ss_pred cchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH-hhhcchhHHHHHHHHHHHHHHHhhccCCCCC
Q 042030 220 AGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTME-WSRTGTFSIFWVICAAAVLFVAFLVPETKGR 294 (322)
Q Consensus 220 ~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~et~~~ 294 (322)
.+.......|.+|++.|+++.|+.+....+|..+++.+.+.+.+ .++...+.+.+++++++.+..+. .++++++
T Consensus 320 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 394 (399)
T PRK05122 320 FPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWL-LYRRAPR 394 (399)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH-hcccccc
Confidence 34445567788999999999999999999999999999998888 67777777777777766655444 4444333
No 46
>PRK12382 putative transporter; Provisional
Probab=99.56 E-value=1.6e-12 Score=111.42 Aligned_cols=69 Identities=7% Similarity=0.014 Sum_probs=56.0
Q ss_pred cchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH-hhhcchhHHHHHHHHHHHHHHHhhc
Q 042030 220 AGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTME-WSRTGTFSIFWVICAAAVLFVAFLV 288 (322)
Q Consensus 220 ~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (322)
.+.......|.+|++.|+++.|+.+....+|..++|.+.+.+.+ .++...+.+.+++.+++.+..+...
T Consensus 320 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 389 (392)
T PRK12382 320 FPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTILSF 389 (392)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHhhc
Confidence 34445677888999999999999999999999999999999988 6777778887777777766555443
No 47
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=99.55 E-value=1.5e-12 Score=110.90 Aligned_cols=232 Identities=16% Similarity=0.124 Sum_probs=124.1
Q ss_pred eeeeecCCCCchhh--HHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHhhHHHHHHHHH-hhccCCChHHHHhcCCHH
Q 042030 5 YIAEITPKNIRGAF--TATSQFLIVSGMSVMYLVGTIV----SWRALALIAAVPCLLQVVG-LFFIPESPRWLAKIGKEK 77 (322)
Q Consensus 5 ~i~e~~~~~~rg~~--~~~~~~~~~~G~~l~~~~~~~~----~Wr~~f~~~~~~~~i~~~~-~~~lpesp~~l~~~~~~~ 77 (322)
++.|+.|+++|++. .+....+..+|..+++.++..+ +||+.|++.+++.++..+. ++++||+|+... .+
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 186 (375)
T TIGR00899 111 LAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVWLFLPSYPRGAP----GA 186 (375)
T ss_pred HHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhCCCcccCcc----cc
Confidence 44577777777643 5666666777777777666543 8999999988887766544 566899775210 00
Q ss_pred HHHHHHHHHhCCchhhhhhHHHHHHhhhhcccccccchhhhcchhhHHHHHHHHHHHhhhhccchhhhHhcHHHHHH-Hc
Q 042030 78 ELETTLQCLRGKTADISMESADIRDCTQTFEKDSKAGIFDLFQRRYAYSLSVGVGLMVMQPFVGSAAIAYYASYIIA-AA 156 (322)
Q Consensus 78 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 156 (322)
+ .+.+.++.++++..+.......+.+. .......+.|.++. ..
T Consensus 187 ~--------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 230 (375)
T TIGR00899 187 L--------------------------------TRLEVRGLLASRDTRLLFVACTLMWG----CNILYIINMPLLIIHEL 230 (375)
T ss_pred c--------------------------------CcchhhhhhcCcchHHHHHHHHHHHH----HHHHHHhhhHHHHHHHc
Confidence 0 00011223334433333332222222 12233445565554 45
Q ss_pred CCCchhHHHHHHHHH----------------HH-HHHHHHHHHH--HHHHHHhccCCCCCCchhHHHHHHHHHHHHHHhh
Q 042030 157 DLSTDIGSISMAIIQ----------------AS-TIWMGLSLTI--IALAFGLQDTHLWNEATPVLVYVGIMGFSIAFAL 217 (322)
Q Consensus 157 g~~~~~~~~~~~~~~----------------~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (322)
|.+....+...+... .+ .....+..+. ......... .+.+.......+.+.+.+.
T Consensus 231 g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~g~~~g~ 304 (375)
T TIGR00899 231 GLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAAD------NSLWALLMLQLLNAIFIGI 304 (375)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHH
Confidence 777664443332211 00 0000111111 111111111 1122222222222222222
Q ss_pred cccchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH-hhhcchhHHHHHHHHHHHHHH
Q 042030 218 GMAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTME-WSRTGTFSIFWVICAAAVLFV 284 (322)
Q Consensus 218 ~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 284 (322)
..+....+..|..|++ |+++.++.+...++|..++|.+.+.+.+ .++...+...+++.+++.+..
T Consensus 305 -~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~ 370 (375)
T TIGR00899 305 -LAGIGMLYFQDLMPGR-AGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCL 370 (375)
T ss_pred -HHHHHHHHHHHhCcch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHH
Confidence 2345567788988865 5699999999999999999999999888 566667777776666665543
No 48
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=99.54 E-value=3.9e-13 Score=113.88 Aligned_cols=224 Identities=12% Similarity=0.038 Sum_probs=127.3
Q ss_pred ceeeeeecCCCCchhhHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHhhHHHHHHHHHhhc--cCCChHHHHhcCCH
Q 042030 3 PIYIAEITPKNIRGAFTATSQFLIVSGMSVMYLVGTIV----SWRALALIAAVPCLLQVVGLFF--IPESPRWLAKIGKE 76 (322)
Q Consensus 3 ~~~i~e~~~~~~rg~~~~~~~~~~~~G~~l~~~~~~~~----~Wr~~f~~~~~~~~i~~~~~~~--lpesp~~l~~~~~~ 76 (322)
.+++.|++|+++|++..++.+.+..+|..+++.++..+ +||+.|++.++..++..+..++ .||+++ ++++
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 189 (365)
T TIGR00900 114 QAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIVSVRIPELAA----SEIQ 189 (365)
T ss_pred HHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcccccCCC----cccc
Confidence 46788999999999999999999999999998887654 8999999988776665444333 344321 0000
Q ss_pred HHHHHHHHHHhCCchhhhhhHHHHHHhhhhcccccccchhhhcchhhHHHHHHHHHHHhhhhccchhhhH-hcHHHHHHH
Q 042030 77 KELETTLQCLRGKTADISMESADIRDCTQTFEKDSKAGIFDLFQRRYAYSLSVGVGLMVMQPFVGSAAIA-YYASYIIAA 155 (322)
Q Consensus 77 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 155 (322)
+..+ +... +.+..++.+++++..+.......+... ...... .+.|.+.++
T Consensus 190 ~~~~--------------~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 240 (365)
T TIGR00900 190 ALSN--------------AVLR-----------DTREGIKFVLKNPLLRTLLLLALLFNL----VFAPAIVALFPYVQSK 240 (365)
T ss_pred ccch--------------hHHH-----------HHHhHHHHHHcCcHHHHHHHHHHHHHH----HHHHHHHHHhHHHHHH
Confidence 0000 0000 011234555665555444433222222 122233 667877776
Q ss_pred -cCCCchhHHHHHHHHH----------------HH-HHHHHHHHHHHHHHHHhccCCCCCCchhHHHHHHHHHHHHHHhh
Q 042030 156 -ADLSTDIGSISMAIIQ----------------AS-TIWMGLSLTIIALAFGLQDTHLWNEATPVLVYVGIMGFSIAFAL 217 (322)
Q Consensus 156 -~g~~~~~~~~~~~~~~----------------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (322)
.|.+....+....... .. ......+..+.+......... . .+.+...+..++.+.+.+.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~g~~~~~ 317 (365)
T TIGR00900 241 YLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLT--P-PNFPLFLVLWFAIGVGYGP 317 (365)
T ss_pred HhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhh--c-hhHHHHHHHHHHHHHHHHH
Confidence 5777654443333222 00 001111111111111111100 0 0123333333333333332
Q ss_pred cccchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 042030 218 GMAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTME 263 (322)
Q Consensus 218 ~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~ 263 (322)
..+....+..|..|++.|+++.|+.+...+++..++|.+.+.+.+
T Consensus 318 -~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~ 362 (365)
T TIGR00900 318 -INVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLAD 362 (365)
T ss_pred -HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567889999999999999999999999999999999998876
No 49
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=99.53 E-value=2.2e-12 Score=111.08 Aligned_cols=236 Identities=13% Similarity=0.072 Sum_probs=130.7
Q ss_pred ceeeeeecCCCCchhhHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHhhHHHHHHHHH-hhccCCChHHHHhcCCHH
Q 042030 3 PIYIAEITPKNIRGAFTATSQFLIVSGMSVMYLVGTIV----SWRALALIAAVPCLLQVVG-LFFIPESPRWLAKIGKEK 77 (322)
Q Consensus 3 ~~~i~e~~~~~~rg~~~~~~~~~~~~G~~l~~~~~~~~----~Wr~~f~~~~~~~~i~~~~-~~~lpesp~~l~~~~~~~ 77 (322)
++++.|++|+++|++..++...+..+|..+++.++..+ |||+.|++.++.+++..+. .+++||+++ .+++..
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~lp~~~~---~~~~~~ 202 (413)
T PRK15403 126 YVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGLLLAMPETVK---RGAVPF 202 (413)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCcc---ccCCCC
Confidence 34677899999999999999998888888888877654 8999999988887777554 566899753 110000
Q ss_pred HHHHHHHHHhCCchhhhhhHHHHHHhhhhcccccccchhhhcchhhHHHHHHHHHHHhhhhccchhhhHhcHHHHHHHc-
Q 042030 78 ELETTLQCLRGKTADISMESADIRDCTQTFEKDSKAGIFDLFQRRYAYSLSVGVGLMVMQPFVGSAAIAYYASYIIAAA- 156 (322)
Q Consensus 78 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 156 (322)
.. +....+++.+++++..+.......+.. ...+....+.|.++++.
T Consensus 203 ~~-----------------------------~~~~~~~~~ll~~~~~~~~~l~~~~~~----~~~~~~~~~~P~~l~~~~ 249 (413)
T PRK15403 203 SA-----------------------------KSVLRDFRNVFRNRLFLTGAATLSLSY----IPMMSWVAVSPVILIDAG 249 (413)
T ss_pred Ch-----------------------------HHHHHHHHHHHcCHHHHHHHHHHHHHH----HHHHHHHHhChHHHHHhc
Confidence 00 001123456666665554444322222 23455566778888776
Q ss_pred CCCchhHHHHHHHHH-------------------HHH-----HHHHHHHHHHHHHHHhccCCCCCCchhHHHHHHHHHHH
Q 042030 157 DLSTDIGSISMAIIQ-------------------AST-----IWMGLSLTIIALAFGLQDTHLWNEATPVLVYVGIMGFS 212 (322)
Q Consensus 157 g~~~~~~~~~~~~~~-------------------~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (322)
|++....+....... ... ....++..++........ ...+..+...+++.
T Consensus 250 g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~------~~~~~~~~~~~l~~ 323 (413)
T PRK15403 250 GMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQLVGLALLIVGNLLWP------HVWLWSVLGTSLYA 323 (413)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHcc------ccHHHHHHHHHHHH
Confidence 787764443321111 000 011111111111110111 11112233333333
Q ss_pred HHHhhcccchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHH
Q 042030 213 IAFALGMAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTMEWSRTGTFSIFWVICAAAVL 282 (322)
Q Consensus 213 ~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (322)
.+.+... +......-+. .+..++++.++.+.....+...++...+++.+.+...++...++++.+...
T Consensus 324 ~G~~~~~-p~~~~~al~~-~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 391 (413)
T PRK15403 324 FGIGLIF-PTLFRFTLFS-NNLPKGTVSASLNMVILMVMAVSVEIGRWLWFNGGRLPFHLLAVVAGVIVV 391 (413)
T ss_pred HHHHHHh-HHHHHHHhcc-CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHH
Confidence 3333322 2222111111 222479999999999988999999998888776666666666655554433
No 50
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=99.52 E-value=2.7e-12 Score=109.64 Aligned_cols=66 Identities=18% Similarity=0.296 Sum_probs=53.1
Q ss_pred ceeeeeecCCCCchhhHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHhhHHHHHHHHH-hhccCCChH
Q 042030 3 PIYIAEITPKNIRGAFTATSQFLIVSGMSVMYLVGTIV----SWRALALIAAVPCLLQVVG-LFFIPESPR 68 (322)
Q Consensus 3 ~~~i~e~~~~~~rg~~~~~~~~~~~~G~~l~~~~~~~~----~Wr~~f~~~~~~~~i~~~~-~~~lpesp~ 68 (322)
.+++.|++|+++|++..++.+....+|..+++.++..+ +||+.|++.++..++..+. .++.||+++
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (385)
T TIGR00710 115 QALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFFILPETLP 185 (385)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 35678999999999999999999999988888877654 8999999888776666444 556787653
No 51
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=99.52 E-value=2.7e-12 Score=109.74 Aligned_cols=248 Identities=10% Similarity=0.020 Sum_probs=131.3
Q ss_pred ceeeeeecCCCCchhhHHHHHHHHHHHHHHHHHhhhhh---hhHHHHHHhhHHHHHHHHHhhccCCChHHHHhcCCHHHH
Q 042030 3 PIYIAEITPKNIRGAFTATSQFLIVSGMSVMYLVGTIV---SWRALALIAAVPCLLQVVGLFFIPESPRWLAKIGKEKEL 79 (322)
Q Consensus 3 ~~~i~e~~~~~~rg~~~~~~~~~~~~G~~l~~~~~~~~---~Wr~~f~~~~~~~~i~~~~~~~lpesp~~l~~~~~~~~a 79 (322)
.+++.|++|+++|+++.++.+....+|.++|+.+++.+ .|+..+.+.+...++..+..+.+||+|+.. ++++++.
T Consensus 110 ~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~ 187 (393)
T PRK11195 110 YGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADPHAEAALAVCALIYLLAALFNLFIPRLGARR--PGQSWNP 187 (393)
T ss_pred HHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccc--cccCCCH
Confidence 35678999999999999999999999999999988766 455565555544444445567789876421 1110000
Q ss_pred HHHHHHHhCCchhhhhhHHHHHHhhhhcccccccchhhhcchhhHHHHHHHHHHHhhhhccchhhhHhcHHHHHHH-cCC
Q 042030 80 ETTLQCLRGKTADISMESADIRDCTQTFEKDSKAGIFDLFQRRYAYSLSVGVGLMVMQPFVGSAAIAYYASYIIAA-ADL 158 (322)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~ 158 (322)
++.. ++. +..++.+++++..+.......+.+.. .....+..|.++++ .|.
T Consensus 188 ~~~~--------------~~~-----------~~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~lg~ 238 (393)
T PRK11195 188 IALL--------------RDF-----------FHACRVLWRDKLGRFSLAGTTLFWGA----GATLRFLVLAWAPVALGI 238 (393)
T ss_pred HHHH--------------HHH-----------HHHHHHHHhCchhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHcCC
Confidence 0000 000 01124455555544443332222221 22333344444443 377
Q ss_pred CchhHHHHHHHHHH----------------H-HHHHHHHHHHHHHHHHhccCCCCCCchhHHHHHHHHHHHHHHhhcccc
Q 042030 159 STDIGSISMAIIQA----------------S-TIWMGLSLTIIALAFGLQDTHLWNEATPVLVYVGIMGFSIAFALGMAG 221 (322)
Q Consensus 159 ~~~~~~~~~~~~~~----------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (322)
++...+........ . ......+ ..++......... .+.+.......+.+.+.+... +
T Consensus 239 s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g-~~~~~~~~~~~~~----~~~~~~~~~~~~~G~~~g~~~-~ 312 (393)
T PRK11195 239 TLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAG-ILMGLVVLLMALQ----HSLLPAYPLLILIGALGGFFV-V 312 (393)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHH-HHHHHHHHHHHHH----hHHHHHHHHHHHHHHhhhhhh-h
Confidence 76644444433220 0 0001111 1111111100000 112222233323333333322 3
Q ss_pred hhhhhhccccCccc-cchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhh
Q 042030 222 LPSVIMAEIFPINI-KGSAGSLVILLHNCSNWIVTYTFHFTMEWSRTGTFSIFWVICAAAVLFVAFL 287 (322)
Q Consensus 222 ~~~~~~~e~~p~~~-r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (322)
...+...|..|++. ++++.++.+...+++..++..+++.+...+....+.+.+...+++..+.+.+
T Consensus 313 ~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (393)
T PRK11195 313 PMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLLVKLGVPVVAVIVGFGLLVALAMALLW 379 (393)
T ss_pred hHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 33566677766655 7999999999999999999999987766766666666655555555544443
No 52
>PRK03699 putative transporter; Provisional
Probab=99.52 E-value=2.2e-12 Score=110.58 Aligned_cols=233 Identities=6% Similarity=0.040 Sum_probs=125.5
Q ss_pred ceeeeeecCCCCchhhHHHHHHHHHHHHHHHHHhhhh-----hhhHHHHHHhhHHHHHHHHHhhccCCChHHHHhcCCHH
Q 042030 3 PIYIAEITPKNIRGAFTATSQFLIVSGMSVMYLVGTI-----VSWRALALIAAVPCLLQVVGLFFIPESPRWLAKIGKEK 77 (322)
Q Consensus 3 ~~~i~e~~~~~~rg~~~~~~~~~~~~G~~l~~~~~~~-----~~Wr~~f~~~~~~~~i~~~~~~~lpesp~~l~~~~~~~ 77 (322)
..++.|++|+++|++..+..+.+..+|..+++.+... .+||+.|.+.+++.++..++.++ .+.|+. ++++.+
T Consensus 117 ~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~~~~~-~~~p~~--~~~~~~ 193 (394)
T PRK03699 117 TFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIFILTLF-SEFPAL--GKHAPK 193 (394)
T ss_pred hHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHh-cCCccc--cccCcc
Confidence 4567899999999999998888888887777766543 38999999888777665544332 222220 000000
Q ss_pred HHHHHHHHHhCCchhhhhhHHHHHHhhhhcccccccchhhhcchhhHHHHHHHHHHHhhhhccchhhhHhcHHHHHHH-c
Q 042030 78 ELETTLQCLRGKTADISMESADIRDCTQTFEKDSKAGIFDLFQRRYAYSLSVGVGLMVMQPFVGSAAIAYYASYIIAA-A 156 (322)
Q Consensus 78 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 156 (322)
++ ++ ..++.++ + +.+.. .+..+......+.+..|.|.++++ .
T Consensus 194 -----------~~-----------------~~----~~~~~~~-~---~~~~~-~~~~~~~~~~~~~~~~~~p~~l~~~~ 236 (394)
T PRK03699 194 -----------AD-----------------KP----VAKEKWG-I---GVLFL-AIAALLYILAQLTFISWVPEYAQKKF 236 (394)
T ss_pred -----------cc-----------------Cc----cccccCC-h---HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 00 00 0001111 1 11111 112222223355677889988865 4
Q ss_pred CCCchhHHHHHHHHH----------------HH---HHHHHHHHHHHHHHHHhccCCCCCCchhHHHHHHHHHHHHHHhh
Q 042030 157 DLSTDIGSISMAIIQ----------------AS---TIWMGLSLTIIALAFGLQDTHLWNEATPVLVYVGIMGFSIAFAL 217 (322)
Q Consensus 157 g~~~~~~~~~~~~~~----------------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (322)
|++....+...+... .. .................... . ........+..+.+ ..
T Consensus 237 g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~-----~-~~~~~~~~~~~G~~-~~ 309 (394)
T PRK03699 237 GMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTD-----D-PSHLLYAILGLGFF-SS 309 (394)
T ss_pred CCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcC-----C-chHHHHHHHHHHHH-HH
Confidence 888765544433222 00 00000011111111111111 1 12222222222222 22
Q ss_pred cccchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH-hhhcchhHHHHHHHHHHHHH
Q 042030 218 GMAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTME-WSRTGTFSIFWVICAAAVLF 283 (322)
Q Consensus 218 ~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 283 (322)
+..+....+..|..|. .++...+.....+.+|+.++|.+.+.+.+ .+....++..+++.+++.+.
T Consensus 310 ~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~ 375 (394)
T PRK03699 310 AIYTTIITLGSQQTKV-ASPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVM 375 (394)
T ss_pred HHHHHHHHHHHHHccC-CCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHH
Confidence 3344445566776664 45778888888999999999999999988 67777777777766666554
No 53
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=99.51 E-value=1.9e-12 Score=106.18 Aligned_cols=244 Identities=18% Similarity=0.212 Sum_probs=151.4
Q ss_pred cceeeeeecCCCCchhhHHHHHHHHHHHHHH----HHHhhhhhh---hHHHHHHhhHHHHHH-HHHhhccCCChHHHHhc
Q 042030 2 IPIYIAEITPKNIRGAFTATSQFLIVSGMSV----MYLVGTIVS---WRALALIAAVPCLLQ-VVGLFFIPESPRWLAKI 73 (322)
Q Consensus 2 ~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~l----~~~~~~~~~---Wr~~f~~~~~~~~i~-~~~~~~lpesp~~l~~~ 73 (322)
+..++++++||+++|.++++.. ..++|..+ +|.+....+ ||....+..++.++. +..++.+.|.|+.....
T Consensus 125 ~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~ 203 (417)
T COG2223 125 GMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASV 203 (417)
T ss_pred ccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhccc
Confidence 4578999999999999999997 55556555 555555557 999999888877775 45577788877631110
Q ss_pred CCHHHHHHHHHHHhCCchhhhhhHHHHHHhhhhcccccccchhhhcchhhHHHHHHHHHHHhhhhccchhhhHhcHHHHH
Q 042030 74 GKEKELETTLQCLRGKTADISMESADIRDCTQTFEKDSKAGIFDLFQRRYAYSLSVGVGLMVMQPFVGSAAIAYYASYII 153 (322)
Q Consensus 74 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (322)
++. .+..++.++++++.|... +.++..+.++.++..++|.++
T Consensus 204 ~~~----------------------------------~~~~~~~v~~~~~~W~ls----llY~~tFG~Fvgfs~~l~~~~ 245 (417)
T COG2223 204 KPQ----------------------------------LPAQLKAVFSNKDTWLLS----LLYFATFGGFVGFSAYLPMYL 245 (417)
T ss_pred ccc----------------------------------chhHHHHHhcCcchHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 000 002345566555544433 334555567788899999988
Q ss_pred HHc-CCCchhHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHhccCCCCCCchhHHHHHHHHHH
Q 042030 154 AAA-DLSTDIGSISMAIIQ---------------------ASTIWMGLSLTIIALAFGLQDTHLWNEATPVLVYVGIMGF 211 (322)
Q Consensus 154 ~~~-g~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (322)
++. |.+...++....... ..........+..... ...........+....+......
T Consensus 246 ~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~l~l 324 (417)
T COG2223 246 VTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALL-SLFLTGFGHGGSFVVFVAVFLAL 324 (417)
T ss_pred HHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHH-HccccccccCcchHHHHHHHHHH
Confidence 875 888776544443333 1111111111111111 11111111112233333334444
Q ss_pred HHHHhhcccchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH-hh-hcchhHHHHHHHHHHHHHHHhh
Q 042030 212 SIAFALGMAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTME-WS-RTGTFSIFWVICAAAVLFVAFL 287 (322)
Q Consensus 212 ~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~ 287 (322)
..+.+.+-+.+ +-+++..+|.+. +...|++...+.+|+++-|..++...+ .+ +...|.++..+.+++.+..+..
T Consensus 325 ~~~~G~GnGsv-fk~Ip~if~~~~-G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~~ 400 (417)
T COG2223 325 FVFAGLGNGSV-FKMIPVIFPKET-GAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWAL 400 (417)
T ss_pred HHHhccCcchh-eeechHHHHhhh-hHHHHHHHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555554444 778888888654 888999999999999999999998888 33 5566777788777777766553
No 54
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=99.51 E-value=4.3e-12 Score=109.01 Aligned_cols=242 Identities=14% Similarity=0.092 Sum_probs=128.9
Q ss_pred eeeeecCCCCchhhHHHHHHHHHHHH-HHHHHhhhh----hhhHHHHHHhhHHHHHHH-HHhhccCCChHHHHhcCCHHH
Q 042030 5 YIAEITPKNIRGAFTATSQFLIVSGM-SVMYLVGTI----VSWRALALIAAVPCLLQV-VGLFFIPESPRWLAKIGKEKE 78 (322)
Q Consensus 5 ~i~e~~~~~~rg~~~~~~~~~~~~G~-~l~~~~~~~----~~Wr~~f~~~~~~~~i~~-~~~~~lpesp~~l~~~~~~~~ 78 (322)
++.|++|+++||+++++.+.+..+|. .+++.++.. .||+..++......++.. +..++.+|.++- .+++++++
T Consensus 129 ~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 207 (402)
T TIGR00897 129 WVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALAFVLTGGVIALFSNKDIFTP-QHMQTREK 207 (402)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHhccCCCCCc-ccccCCcc
Confidence 45688899999999999999999986 577776643 376555444333322222 223334443210 00000000
Q ss_pred HHHHHHHHhCCchhhhhhHHHHHHhhhhcccccccchhhhcchhhHHHHHHHHHHHhhhhccchhhhHhcHHHHHHHcCC
Q 042030 79 LETTLQCLRGKTADISMESADIRDCTQTFEKDSKAGIFDLFQRRYAYSLSVGVGLMVMQPFVGSAAIAYYASYIIAAADL 158 (322)
Q Consensus 79 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 158 (322)
. ++.+..++.+++++..+....... .+..+.+....+.|.++++.|+
T Consensus 208 ------------------~-----------~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~p~~~~~~g~ 254 (402)
T TIGR00897 208 ------------------F-----------SELGKAATILFTNPNVLLGGMVRI----INTIGLFGFAVFLPMFVAELGF 254 (402)
T ss_pred ------------------h-----------hhHHHHHHHHHcChhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHcCC
Confidence 0 001112445666655443333222 2223456677889999888888
Q ss_pred CchhHHHHHHHHH----------------HH-----HHHHHHHHHHHHHHHH-hccCCCCCCchhHHHHHHHHHHHHHHh
Q 042030 159 STDIGSISMAIIQ----------------AS-----TIWMGLSLTIIALAFG-LQDTHLWNEATPVLVYVGIMGFSIAFA 216 (322)
Q Consensus 159 ~~~~~~~~~~~~~----------------~~-----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (322)
+........+... .. .....+...+...... ..... . ...+.......+.+.+.+
T Consensus 255 s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~--~-~~~~~~~~~~~~~G~~~~ 331 (402)
T TIGR00897 255 STSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHF--G-HSFAVALIIAIALGIFLA 331 (402)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHcc--C-CcHHHHHHHHHHHHHHHH
Confidence 8765443333222 00 0000111111111111 11100 0 112222222222232222
Q ss_pred hcccchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH-hhhcchhHHHHHHHHHHHHHHHh
Q 042030 217 LGMAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTME-WSRTGTFSIFWVICAAAVLFVAF 286 (322)
Q Consensus 217 ~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 286 (322)
+..+. .....|..| +.|+++.|+.+...++++.++|.+.+.+.+ .++...+.+.+++.+++++..++
T Consensus 332 -~~~~~-~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~~ 399 (402)
T TIGR00897 332 -GYVPL-AAVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLTAF 399 (402)
T ss_pred -HHHHH-HHHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH
Confidence 22333 345567655 589999999999999999999999999998 67777777777777666665443
No 55
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=99.50 E-value=2.5e-12 Score=110.78 Aligned_cols=69 Identities=7% Similarity=-0.096 Sum_probs=56.2
Q ss_pred cchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH-hhhcchhHHHHHHHHHHHHHHHhhc
Q 042030 220 AGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTME-WSRTGTFSIFWVICAAAVLFVAFLV 288 (322)
Q Consensus 220 ~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (322)
.+....+..+..|++.|++..++.+....+|..++|.+.+.+.+ .++...|.+.+++.++++++.+...
T Consensus 329 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~ 398 (408)
T PRK09874 329 LPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWNSL 398 (408)
T ss_pred HHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 44446667788899999999999999999999999999998888 6777888888888777777655543
No 56
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=99.50 E-value=4.3e-12 Score=109.22 Aligned_cols=66 Identities=21% Similarity=0.190 Sum_probs=50.4
Q ss_pred ceeeeeecCCCCchhhHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHhhHHHHHHHHH-hhccCCChH
Q 042030 3 PIYIAEITPKNIRGAFTATSQFLIVSGMSVMYLVGTIV----SWRALALIAAVPCLLQVVG-LFFIPESPR 68 (322)
Q Consensus 3 ~~~i~e~~~~~~rg~~~~~~~~~~~~G~~l~~~~~~~~----~Wr~~f~~~~~~~~i~~~~-~~~lpesp~ 68 (322)
++++.|++|+++|++..++......+|..+++.++..+ +||+.|++.++..++..+. .+.+||+++
T Consensus 123 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (406)
T PRK15402 123 YAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSFFGLWRAMPETAG 193 (406)
T ss_pred HHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHhCCCCCc
Confidence 34567899999999998888877777878877776544 8999999988877766543 456788753
No 57
>PRK10091 MFS transport protein AraJ; Provisional
Probab=99.49 E-value=8.2e-12 Score=106.56 Aligned_cols=64 Identities=22% Similarity=0.221 Sum_probs=51.0
Q ss_pred eeeeeecCCCCchhhHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHhhHHHHHHHH-HhhccCCCh
Q 042030 4 IYIAEITPKNIRGAFTATSQFLIVSGMSVMYLVGTIV----SWRALALIAAVPCLLQVV-GLFFIPESP 67 (322)
Q Consensus 4 ~~i~e~~~~~~rg~~~~~~~~~~~~G~~l~~~~~~~~----~Wr~~f~~~~~~~~i~~~-~~~~lpesp 67 (322)
+++.|+.|+++|++..+....+..+|..+++.++..+ +||+.|++.++..++..+ ..+++||.+
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~lp~~~ 182 (382)
T PRK10091 114 IVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLASIYFWVPDIR 182 (382)
T ss_pred HHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 4567899999999999999999989888887776544 899999998887666544 456688864
No 58
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=99.48 E-value=3.5e-12 Score=123.53 Aligned_cols=228 Identities=10% Similarity=0.040 Sum_probs=131.8
Q ss_pred ceeeeeecCCCCchhhHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHhhHHHHHHHHHhhccCCChHHHHhcCCHHH
Q 042030 3 PIYIAEITPKNIRGAFTATSQFLIVSGMSVMYLVGTIV----SWRALALIAAVPCLLQVVGLFFIPESPRWLAKIGKEKE 78 (322)
Q Consensus 3 ~~~i~e~~~~~~rg~~~~~~~~~~~~G~~l~~~~~~~~----~Wr~~f~~~~~~~~i~~~~~~~lpesp~~l~~~~~~~~ 78 (322)
.+++.|++|+++|++++++.+.+..+|.++|+.+++.+ +||+.|+..++.+++.++..+++|+++. .+.+.+.
T Consensus 130 ~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 206 (1140)
T PRK06814 130 YSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLMGIAVLGWLASLFIPKTGN---AAPDLKI 206 (1140)
T ss_pred HHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHhhCCCCCC---CCCCCee
Confidence 46788999999999999999999999999999998876 8999996666666666666677777642 0000000
Q ss_pred HHHHHHHHhCCchhhhhhHHHHHHhhhhcccccccchhhhcchhhHHHHHHHHHHHhhhhccchhhhHhcHHHHHHHc-C
Q 042030 79 LETTLQCLRGKTADISMESADIRDCTQTFEKDSKAGIFDLFQRRYAYSLSVGVGLMVMQPFVGSAAIAYYASYIIAAA-D 157 (322)
Q Consensus 79 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g 157 (322)
.. .. .. .....++.+.+++..+...+...+..+ ....+..+.|.++++. |
T Consensus 207 ~~-----------~~---~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~p~~~~~~~g 257 (1140)
T PRK06814 207 DR-----------NI---IR-----------STITLLKYAKADKRIWLAILGISWFWL----VGAVVLSQLPLLAKETLG 257 (1140)
T ss_pred cc-----------ch---HH-----------HHHHHHHHHhcCchHHHHHHHHHHHHH----HHHHHHHHhHHHHHHHcC
Confidence 00 00 00 011235556666655555554333322 1344556778777664 7
Q ss_pred CCchhHHHHHHHHH------------------------HHHHHHHHHHHHHHHHHHhc---cCC------CCCCchhHHH
Q 042030 158 LSTDIGSISMAIIQ------------------------ASTIWMGLSLTIIALAFGLQ---DTH------LWNEATPVLV 204 (322)
Q Consensus 158 ~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~---~~~------~~~~~~~~~~ 204 (322)
.+....+.+.+... .+.....+..+.++...... ... .......+..
T Consensus 258 ~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (1140)
T PRK06814 258 GDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWRI 337 (1140)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhcccccHHH
Confidence 77665554444333 00111111111111100000 000 0000112223
Q ss_pred HHHHHHHHHHHhhcccchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 042030 205 YVGIMGFSIAFALGMAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTME 263 (322)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~ 263 (322)
.+..++++.+.+. ..+...+++.+..|++.||+++|+.+....++..+++.+.+.+.+
T Consensus 338 ~~~~~~~g~~~~~-~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~ 395 (1140)
T PRK06814 338 LIDLFGLAAAGGL-YIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQA 395 (1140)
T ss_pred HHHHHHHHHHHHH-hHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333332 333457889999999999999999999999999999999988875
No 59
>PRK15011 sugar efflux transporter B; Provisional
Probab=99.48 E-value=1.1e-11 Score=106.20 Aligned_cols=65 Identities=17% Similarity=0.225 Sum_probs=49.0
Q ss_pred hhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH-hhhcchhHHHHHHHHHHHHHHHhhccC
Q 042030 224 SVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTME-WSRTGTFSIFWVICAAAVLFVAFLVPE 290 (322)
Q Consensus 224 ~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e 290 (322)
..+..|.+|+ .|+++.++.+...++|..++|.+.+.+.+ .++...+.+.+++.+++.+ .++..||
T Consensus 327 ~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~ 392 (393)
T PRK15011 327 MLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLF-CLLRIKD 392 (393)
T ss_pred HHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH-HHHhhcC
Confidence 5667899886 58999999988899999999999999988 5666666655555555444 4444555
No 60
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=99.48 E-value=9.5e-13 Score=116.04 Aligned_cols=254 Identities=15% Similarity=0.107 Sum_probs=133.1
Q ss_pred ceeeeeecCCCCchhhHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHhhHHHHHHHHH-hhccCCChHHHHhcCCHH
Q 042030 3 PIYIAEITPKNIRGAFTATSQFLIVSGMSVMYLVGTIV----SWRALALIAAVPCLLQVVG-LFFIPESPRWLAKIGKEK 77 (322)
Q Consensus 3 ~~~i~e~~~~~~rg~~~~~~~~~~~~G~~l~~~~~~~~----~Wr~~f~~~~~~~~i~~~~-~~~lpesp~~l~~~~~~~ 77 (322)
.+++.|++|+++|+++.+++..+..+|..+++.++..+ +||+.|++.++++++..+. .+++||+++ .++++.|
T Consensus 112 ~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d 189 (485)
T TIGR00711 112 FSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFFILPRDKP--AASENFD 189 (485)
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHHHHHcCCccc--cccCCCc
Confidence 45778999999999999999999999999988887655 8999999988877766544 456777543 1122222
Q ss_pred HHHHHHH---------HH-hCCchhh--hhhHHHH---------HHhhhhcccccccchhhhcchhhHHHHHHHHHHHhh
Q 042030 78 ELETTLQ---------CL-RGKTADI--SMESADI---------RDCTQTFEKDSKAGIFDLFQRRYAYSLSVGVGLMVM 136 (322)
Q Consensus 78 ~a~~~~~---------~~-~~~~~~~--~~~~~~~---------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 136 (322)
.....+. .. ..+..+. +.+.... .....+.+++++....++++++..+...+...+..
T Consensus 190 ~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 268 (485)
T TIGR00711 190 FLGLLLLSVGLGSLLYGLSEGPERGWFDSNEILILSITGLVAIIAFVVWELTDDNPLVDLRLFKYRNFTIGCVYMSLLG- 268 (485)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHcCCCCccCHHHHcCCChHHHHHHHHHHH-
Confidence 2111100 00 0110000 0000000 00000001111111234555555444433322222
Q ss_pred hhccchhhhHhcHHHHHHHc-CCCchhHHHHHHHHH----------------HH-HHHHHHHHHHHHHHHHhccCCCCCC
Q 042030 137 QPFVGSAAIAYYASYIIAAA-DLSTDIGSISMAIIQ----------------AS-TIWMGLSLTIIALAFGLQDTHLWNE 198 (322)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~----------------~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (322)
..++...++.|.++++. |++....+....... .+ .....++..+.+............+
T Consensus 269 ---~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 345 (485)
T TIGR00711 269 ---LGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTPD 345 (485)
T ss_pred ---HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCCCC
Confidence 23455667788888764 888765544443322 00 0111111111111111111000111
Q ss_pred chhHHHHHHHHHHHHHHhhcccchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 042030 199 ATPVLVYVGIMGFSIAFALGMAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTME 263 (322)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~ 263 (322)
...+.......+.+.+.+....+. .....+..|++.|+++.|+.+....+|+.+++.+.+.+.+
T Consensus 346 ~~~~~~~~~~~l~g~g~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~ 409 (485)
T TIGR00711 346 TPFLAIALPQFIRGFGMGCFFMPL-TTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILT 409 (485)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHH-HHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222222333333333322233 4556677899999999999999999999999999988776
No 61
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=99.48 E-value=2e-11 Score=104.19 Aligned_cols=227 Identities=15% Similarity=0.037 Sum_probs=129.2
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHhhHHHHHHHHHhhccCCChHHHHhcCCHHHHHHHHHHHh
Q 042030 12 KNIRGAFTATSQFLIVSGMSVMYLVGTIV----SWRALALIAAVPCLLQVVGLFFIPESPRWLAKIGKEKELETTLQCLR 87 (322)
Q Consensus 12 ~~~rg~~~~~~~~~~~~G~~l~~~~~~~~----~Wr~~f~~~~~~~~i~~~~~~~lpesp~~l~~~~~~~~a~~~~~~~~ 87 (322)
+++|++..+....+.++|.++++.++..+ |||+.|++.+...++.++.. .++|+++ .+++.++
T Consensus 123 ~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~--------- 189 (382)
T TIGR00902 123 QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAILTAGLAFMLIGF-LIKPTIP---PKDAIPE--------- 189 (382)
T ss_pred HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHH-HcCCCCC---CCccccc---------
Confidence 46788888988888888888888776554 99999988665533333333 3344321 0000000
Q ss_pred CCchhhhhhHHHHHHhhhhcccccccchhhhcchhhHHHHHHHHHHHhhhhccchhhhHhcHHHHHHHcCCCchhHHHHH
Q 042030 88 GKTADISMESADIRDCTQTFEKDSKAGIFDLFQRRYAYSLSVGVGLMVMQPFVGSAAIAYYASYIIAAADLSTDIGSISM 167 (322)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 167 (322)
++.....+.++++|++..+.......+... .......+.|.++++.|.+....+...
T Consensus 190 -------------------~~~~~~~~~~~~l~~~~~~~~l~~~~l~~~----~~~~~~~~~~~~l~~~g~s~~~~g~l~ 246 (382)
T TIGR00902 190 -------------------DESQGDSAFIALLKNPMNLRFLAAVCLIQG----AHAAYYGFSAIYWQAAGISASATGLLW 246 (382)
T ss_pred -------------------cccccchhHHHHHcChHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCCCHhHHHHHH
Confidence 000112235667777665555444333222 344556677877888888887665555
Q ss_pred HHHH----------------HH-HHHHHHHHHHHH--HHHHhccCCCCCCchhHHHHHHHHHHHHHHhhcccchhhhhhc
Q 042030 168 AIIQ----------------AS-TIWMGLSLTIIA--LAFGLQDTHLWNEATPVLVYVGIMGFSIAFALGMAGLPSVIMA 228 (322)
Q Consensus 168 ~~~~----------------~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (322)
++.. .+ ...+.++.+..+ +...... .+.+..+....+.+..++.. .+....+++
T Consensus 247 ~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~------~~~~~~~~~q~l~g~~~~~~-~~~~~~~i~ 319 (382)
T TIGR00902 247 GIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAI------EAFPLIFLLQILHCGTFAVC-HLAAMRYIA 319 (382)
T ss_pred HHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhH------hhHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 4332 00 001111111111 1111111 22344444445555555543 344467888
Q ss_pred cccCccccchhHHHHHH-HHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHH
Q 042030 229 EIFPINIKGSAGSLVIL-LHNCSNWIVTYTFHFTMEWSRTGTFSIFWVICAAAVL 282 (322)
Q Consensus 229 e~~p~~~r~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (322)
+. |++.|+++.++.+. ...+|..++|.+.|.+.+......+...+++.+++.+
T Consensus 320 ~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~~~~~~~~~~~~~~~~ 373 (382)
T TIGR00902 320 AQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGAGTFVFMAIIAAAAFF 373 (382)
T ss_pred hC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 88 99999999998764 4568999999999999994334556666666665443
No 62
>TIGR00901 2A0125 AmpG-related permease.
Probab=99.46 E-value=2.1e-12 Score=109.13 Aligned_cols=64 Identities=14% Similarity=0.103 Sum_probs=52.7
Q ss_pred eeeeeecCCCCchhhHHHHHHHHHHHHHHHHHhhhhh----h--------hHHHHHHhhHHHHHHHHHhh-ccCCCh
Q 042030 4 IYIAEITPKNIRGAFTATSQFLIVSGMSVMYLVGTIV----S--------WRALALIAAVPCLLQVVGLF-FIPESP 67 (322)
Q Consensus 4 ~~i~e~~~~~~rg~~~~~~~~~~~~G~~l~~~~~~~~----~--------Wr~~f~~~~~~~~i~~~~~~-~lpesp 67 (322)
+++.|++|+++|+++.++...+..+|.++++.++..+ + ||+.|++.++..++..+..+ ..||++
T Consensus 106 a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~~~~~e~~ 182 (356)
T TIGR00901 106 AWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWTALLILPGLLVTLFLAKEPQ 182 (356)
T ss_pred HHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 4678999999999999999999999999998887544 6 99999999988777665544 467753
No 63
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=99.46 E-value=1.1e-11 Score=104.33 Aligned_cols=216 Identities=19% Similarity=0.191 Sum_probs=135.3
Q ss_pred ceeeeeecCCCCchhhHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHhhHHHHHHHHHhhccCCChHHHHhcCCHHH
Q 042030 3 PIYIAEITPKNIRGAFTATSQFLIVSGMSVMYLVGTIV----SWRALALIAAVPCLLQVVGLFFIPESPRWLAKIGKEKE 78 (322)
Q Consensus 3 ~~~i~e~~~~~~rg~~~~~~~~~~~~G~~l~~~~~~~~----~Wr~~f~~~~~~~~i~~~~~~~lpesp~~l~~~~~~~~ 78 (322)
.+++.|++|+++|++..++.+.+..+|..+++.++..+ +||+.+++.+++.++..+...+++ |+
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---------- 176 (352)
T cd06174 109 AALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLL--RL---------- 176 (352)
T ss_pred HHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH--HH----------
Confidence 35678999999999999999999999999999888765 799999998888777765544433 10
Q ss_pred HHHHHHHHhCCchhhhhhHHHHHHhhhhcccccccchhhhcchhhHHHHHHHHHHHhhhhccchhhhHhcHHHHHHHc-C
Q 042030 79 LETTLQCLRGKTADISMESADIRDCTQTFEKDSKAGIFDLFQRRYAYSLSVGVGLMVMQPFVGSAAIAYYASYIIAAA-D 157 (322)
Q Consensus 79 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g 157 (322)
.+.... ..+...........+.|.+.++. +
T Consensus 177 ---------------------------------------------~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (352)
T cd06174 177 ---------------------------------------------LLLLAL----AFFLLSFGYYGLLTYLPLYLQEVLG 207 (352)
T ss_pred ---------------------------------------------HHHHHH----HHHHHHhHHHHHHHHHHHHHHHhcC
Confidence 011111 11111223455566666666665 6
Q ss_pred CCchhHHHHHHHHH----------------HHHH--HHHHHHHHHHHHHHhccCCCCCCchhHHHHHHHHHHHHHHhhcc
Q 042030 158 LSTDIGSISMAIIQ----------------ASTI--WMGLSLTIIALAFGLQDTHLWNEATPVLVYVGIMGFSIAFALGM 219 (322)
Q Consensus 158 ~~~~~~~~~~~~~~----------------~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (322)
.+....+....... .+.. ....+..+........... .+.+.......+.+.+ ....
T Consensus 208 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~~~~~~~~~g~~-~~~~ 282 (352)
T cd06174 208 LSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALA----PSLALLLVALLLLGFG-LGFA 282 (352)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh----ccHHHHHHHHHHHHHH-Hhcc
Confidence 55553333332222 1111 1111111111111111100 1123333333333333 3345
Q ss_pred cchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH-hhhcchhHHHHHHHHHHHHHH
Q 042030 220 AGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTME-WSRTGTFSIFWVICAAAVLFV 284 (322)
Q Consensus 220 ~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 284 (322)
.+....+..|..|++.|++..|+.+...+++..++|.+.+.+.+ .++...+.+.+++.+++.+..
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~ 348 (352)
T cd06174 283 FPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLL 348 (352)
T ss_pred chhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHh
Confidence 66778999999999999999999999999999999999999987 677777888887777776644
No 64
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=99.46 E-value=7.9e-12 Score=121.35 Aligned_cols=253 Identities=14% Similarity=0.059 Sum_probs=131.0
Q ss_pred ceeeeeecCCCCchhhHHHHHHHHHHHHHHHHHhhhhh-------------hhHHHHHHhhHH-HHHHHHHhhccCCChH
Q 042030 3 PIYIAEITPKNIRGAFTATSQFLIVSGMSVMYLVGTIV-------------SWRALALIAAVP-CLLQVVGLFFIPESPR 68 (322)
Q Consensus 3 ~~~i~e~~~~~~rg~~~~~~~~~~~~G~~l~~~~~~~~-------------~Wr~~f~~~~~~-~~i~~~~~~~lpesp~ 68 (322)
.++++|++|+++|++++++.+.+..+|.++++.++..+ +|++.+.+..+. .++.+++.+++||+|+
T Consensus 125 ~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (1146)
T PRK08633 125 YGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVAVLGLIFAYRLPKVPA 204 (1146)
T ss_pred HhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHHHhcCcCCCC
Confidence 46889999999999999999999999999988887654 244544444433 3344455667888875
Q ss_pred HHHhcCCHHHHHHHHHHHhCCchhhhhhHHHHHHhhhhcccccccchhhhcchhhHHHHHHHHHHHhhhhccchhhhHhc
Q 042030 69 WLAKIGKEKELETTLQCLRGKTADISMESADIRDCTQTFEKDSKAGIFDLFQRRYAYSLSVGVGLMVMQPFVGSAAIAYY 148 (322)
Q Consensus 69 ~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (322)
....+++.++ . ... +.....++.+++++..+..++...+.++ .......+
T Consensus 205 ~~~~~~~~~~----------~-----~~~-----------~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~ 254 (1146)
T PRK08633 205 AAPEVFDKKK----------Y-----LFP-----------KLLWRNLKLLRSDRVLWLAIIGLSYFWF----ISQLAQAN 254 (1146)
T ss_pred CCcccccccc----------c-----ccH-----------HHHHHHHHHHhcCcHHHHHHHHHHHHHH----HHHHHHHh
Confidence 3111000000 0 000 0011234556666555544443333322 12334455
Q ss_pred HHHHHHH-cCCCch-hHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHhccCCCCCCchhHHHHHHHH
Q 042030 149 ASYIIAA-ADLSTD-IGSISMAIIQASTI-----------------WMGLSLTIIALAFGLQDTHLWNEATPVLVYVGIM 209 (322)
Q Consensus 149 ~~~~~~~-~g~~~~-~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (322)
.|.++.+ .|.+.. ..+.+.+...++.. ...++.+++++........ .+.+..+++.+
T Consensus 255 ~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 330 (1146)
T PRK08633 255 FPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTA----PSLASVLVLFF 330 (1146)
T ss_pred hHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHh----hhHHHHHHHHH
Confidence 5655544 577766 44444333220000 0001111111111110000 11223333333
Q ss_pred HHHHHHhhcccchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHh--hhcchhHHHHHHHHHHHHHHHhh
Q 042030 210 GFSIAFALGMAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTMEW--SRTGTFSIFWVICAAAVLFVAFL 287 (322)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 287 (322)
+++.+.+. ..+...+++.+..|++.|+++.|+.+.+..+|..+++.+.+.+... +....+.+.+.+.++..++....
T Consensus 331 ~~g~~~~~-~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (1146)
T PRK08633 331 LFGFSAGL-FIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALVTLIGTLYTLLL 409 (1146)
T ss_pred HHHHHHHH-hhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333332 2334478888999999999999999999999988887776655442 22233444444444444433333
Q ss_pred ccC
Q 042030 288 VPE 290 (322)
Q Consensus 288 ~~e 290 (322)
.++
T Consensus 410 ~~~ 412 (1146)
T PRK08633 410 LPD 412 (1146)
T ss_pred hHH
Confidence 443
No 65
>PRK11043 putative transporter; Provisional
Probab=99.46 E-value=2e-11 Score=104.91 Aligned_cols=214 Identities=13% Similarity=0.110 Sum_probs=116.5
Q ss_pred eeeeeecCCCCchhhHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHhhHHHHHHHHHhhccCCChHHHHhcCCHHHH
Q 042030 4 IYIAEITPKNIRGAFTATSQFLIVSGMSVMYLVGTIV----SWRALALIAAVPCLLQVVGLFFIPESPRWLAKIGKEKEL 79 (322)
Q Consensus 4 ~~i~e~~~~~~rg~~~~~~~~~~~~G~~l~~~~~~~~----~Wr~~f~~~~~~~~i~~~~~~~lpesp~~l~~~~~~~~a 79 (322)
+++.|++|+++|++..+.......+|..+++.++..+ +||+.|++.++..++..+..++++|+++ ++ +.++
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~- 191 (401)
T PRK11043 117 ALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTLRLKPSKK---AR-KQSQ- 191 (401)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHcCCCCC---cc-ccch-
Confidence 4567899999999888888777777777777766543 8999999988887777665555665532 00 0000
Q ss_pred HHHHHHHhCCchhhhhhHHHHHHhhhhcccccccchhhhcchhhHHHHHHHHHHHhhhhccchhhhHhcHHHHHHHcCCC
Q 042030 80 ETTLQCLRGKTADISMESADIRDCTQTFEKDSKAGIFDLFQRRYAYSLSVGVGLMVMQPFVGSAAIAYYASYIIAAADLS 159 (322)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 159 (322)
++.+++++++++..+.......... ...+....+.|.++++.|++
T Consensus 192 -------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~p~~~~~~g~s 236 (401)
T PRK11043 192 -------------------------------DALTFKQLLKSKTYLGNVLIFAACS----AAFFAWLTGSPFILEQMGYS 236 (401)
T ss_pred -------------------------------HHHHHHHHHcChhHHHHHHHHHHHH----HHHHHHHHHhHHHHHHcCCC
Confidence 1113445555544333322221111 12344556778888877887
Q ss_pred chhHHHHHHHHH----------------HH----HHHHHHHHHH--HHHHHHhccCCCCCCchhHHHHHHHHHHHHHHhh
Q 042030 160 TDIGSISMAIIQ----------------AS----TIWMGLSLTI--IALAFGLQDTHLWNEATPVLVYVGIMGFSIAFAL 217 (322)
Q Consensus 160 ~~~~~~~~~~~~----------------~~----~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (322)
....+....... .+ .....+...+ .......... . ...+..+....+...+.+
T Consensus 237 ~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~- 311 (401)
T PRK11043 237 PADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLS---H-PSLVPLLIPFCVMAAANG- 311 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhc---c-CcHHHHHHHHHHHHHHHH-
Confidence 764443322111 00 0000011111 1111110100 0 111222222222222222
Q ss_pred cccchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 042030 218 GMAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTME 263 (322)
Q Consensus 218 ~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~ 263 (322)
...+.......|..| +.|+++.|+.+..+..++..++.+.+.+.+
T Consensus 312 ~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~ 356 (401)
T PRK11043 312 AIYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALIS 356 (401)
T ss_pred HHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 234444556667766 578999999999988888999998887766
No 66
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=99.46 E-value=3.6e-11 Score=102.99 Aligned_cols=236 Identities=14% Similarity=0.012 Sum_probs=125.5
Q ss_pred eeeecCCCCchhhHHHHHHHHHHHHHHHHHhhh----hhhhHHHHHHhhHHHHHHHHHhhccCCChHHHHhcCCHHHHHH
Q 042030 6 IAEITPKNIRGAFTATSQFLIVSGMSVMYLVGT----IVSWRALALIAAVPCLLQVVGLFFIPESPRWLAKIGKEKELET 81 (322)
Q Consensus 6 i~e~~~~~~rg~~~~~~~~~~~~G~~l~~~~~~----~~~Wr~~f~~~~~~~~i~~~~~~~lpesp~~l~~~~~~~~a~~ 81 (322)
..|..++++++...+....+..+|.++++.... ..|||..|++.++..++..+..++++|+++ ++.+.++
T Consensus 122 ~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~~~~~~~---~~~~~~~--- 195 (390)
T TIGR02718 122 AAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLWLKDRAV---ASPEAPL--- 195 (390)
T ss_pred HHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCCCc---Cccccch---
Confidence 456667777777777788888888888875443 449999999988887766555455444321 0000000
Q ss_pred HHHHHhCCchhhhhhHHHHHHhhhhcccccccchhhhcchhhHHHHHHHHHHHhhhhccchhhhHhcHHHHHHHcCCCch
Q 042030 82 TLQCLRGKTADISMESADIRDCTQTFEKDSKAGIFDLFQRRYAYSLSVGVGLMVMQPFVGSAAIAYYASYIIAAADLSTD 161 (322)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 161 (322)
....++++++|++..+.......+... .......+.+.++++.|++..
T Consensus 196 ----------------------------~~~~~~~~~l~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~l~~~G~s~~ 243 (390)
T TIGR02718 196 ----------------------------ARRASLFRFFRRPLAWSLLALALLSAM----TAVSGFGLSKLYLVDAGWPLE 243 (390)
T ss_pred ----------------------------hhHHHHHHHHcCcCHHHHHHHHHHHHH----HHHHHHHHhhHHHHhcCCCHH
Confidence 011235566666655544443333222 223334456667777899887
Q ss_pred hHHHHHHHHH-----------------HHHH-HHHHHHHHH---HHHHHh-ccCCCCCCchhHHHHHHHHHHHHHHhhcc
Q 042030 162 IGSISMAIIQ-----------------ASTI-WMGLSLTII---ALAFGL-QDTHLWNEATPVLVYVGIMGFSIAFALGM 219 (322)
Q Consensus 162 ~~~~~~~~~~-----------------~~~~-~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (322)
..+.+..... .+.. ....+..+. ...... ...... ...........+...+.+..
T Consensus 244 ~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~- 320 (390)
T TIGR02718 244 WIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLA--PGIAVAWSCSAFGSLITGIT- 320 (390)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccC--CcHHHHHHHHHHHHHHHHHH-
Confidence 5555443221 0000 001111100 111110 110000 11111111111111122222
Q ss_pred cchhhhhhccccCc-cccchhHHHHHHHHHHHHHHHHHHHHHHHH-hhhcchhHHHHHHHHHHHH
Q 042030 220 AGLPSVIMAEIFPI-NIKGSAGSLVILLHNCSNWIVTYTFHFTME-WSRTGTFSIFWVICAAAVL 282 (322)
Q Consensus 220 ~~~~~~~~~e~~p~-~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 282 (322)
.+.......+..++ +.+++..++.+...++|..++|.+.+.+.+ .++...|...+++.+++.+
T Consensus 321 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~ 385 (390)
T TIGR02718 321 SVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAIL 385 (390)
T ss_pred HHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence 22334454555555 889999999999999999999999999998 5655666666655555443
No 67
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=99.45 E-value=1.3e-12 Score=110.21 Aligned_cols=219 Identities=17% Similarity=0.241 Sum_probs=122.9
Q ss_pred ceeeeeecCCCCchhhHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHhhHHHHHHHHH-hhccCCChHHHHhcCCHH
Q 042030 3 PIYIAEITPKNIRGAFTATSQFLIVSGMSVMYLVGTIV----SWRALALIAAVPCLLQVVG-LFFIPESPRWLAKIGKEK 77 (322)
Q Consensus 3 ~~~i~e~~~~~~rg~~~~~~~~~~~~G~~l~~~~~~~~----~Wr~~f~~~~~~~~i~~~~-~~~lpesp~~l~~~~~~~ 77 (322)
..++.|++|+++|++..++.+.+..+|..+++.++..+ +||+.|++.++..++..++ ..+++++|+....+.+.+
T Consensus 107 ~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~ 186 (352)
T PF07690_consen 107 NALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAILFILFLPEPPPPRERESPKE 186 (352)
T ss_dssp HHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHHHHCCC---STTTT--SSTT
T ss_pred cccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccchhhhhhhhHhhhhhhcccccccccccc
Confidence 35678999999999999999999999999999888765 8999999999988887654 355555443110000000
Q ss_pred HHHHHHHHHhCCchhhhhhHHHHHHhhhhccccccc-chhhhcchhhHHHHHHHHHHHhhhhccchhhhHhcHHHH-HHH
Q 042030 78 ELETTLQCLRGKTADISMESADIRDCTQTFEKDSKA-GIFDLFQRRYAYSLSVGVGLMVMQPFVGSAAIAYYASYI-IAA 155 (322)
Q Consensus 78 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 155 (322)
+ + .+++++.. .++.+++++..+..+....... ........+.|.+ .+.
T Consensus 187 ~-----------------~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~ 236 (352)
T PF07690_consen 187 S-----------------E---------SKKPKPLKPGFKSLFKNPVLWILLIAFFLFF----FVFSGFSFFLPLYLQEV 236 (352)
T ss_dssp T-----------------T-----------HHHCCCH-CTHHHHHHCCHHHHHHHHHHH----HHHHHHHHHHHHHCCHH
T ss_pred c-----------------c---------cccccccccccccccccchhhhhhhhhhHHH----HHHHHhhcccchhhhhc
Confidence 0 0 00001111 2556666554442333222222 2345577788887 455
Q ss_pred cCCC-chhHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHhccCCCCCCchhHHHHHHHHHHHHHH
Q 042030 156 ADLS-TDIGSISMAIIQ-------------------ASTIWMGLSLTIIALAFGLQDTHLWNEATPVLVYVGIMGFSIAF 215 (322)
Q Consensus 156 ~g~~-~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (322)
.|.+ ....+...++.. ............+.......... .......+....+.+.+.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~ 313 (352)
T PF07690_consen 237 LGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPF---SSSPVWLIIALFLIGFGF 313 (352)
T ss_dssp HHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHH---HCHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHH---hhhHHHHHHHHHHHHHHH
Confidence 5877 444443333222 00111111111111111111100 011222333333333333
Q ss_pred hhcccchhhhhhccccCccccchhHHHHHHHHHHHHHHHH
Q 042030 216 ALGMAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVT 255 (322)
Q Consensus 216 ~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~ 255 (322)
+ ...+....+..|.+|++.|+++.|+.+...++++.++|
T Consensus 314 ~-~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 314 G-IVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp H-HHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 2 24566688999999999999999999999999999987
No 68
>PRK09528 lacY galactoside permease; Reviewed
Probab=99.44 E-value=1.1e-11 Score=107.15 Aligned_cols=69 Identities=10% Similarity=0.022 Sum_probs=54.0
Q ss_pred hhhhhhccccCccccchhHHH-HHHHHHHHHHHHHHHHHHHHH-hhhcchhHHHHHHHHHHHHHHHhhccC
Q 042030 222 LPSVIMAEIFPINIKGSAGSL-VILLHNCSNWIVTYTFHFTME-WSRTGTFSIFWVICAAAVLFVAFLVPE 290 (322)
Q Consensus 222 ~~~~~~~e~~p~~~r~~~~~~-~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e 290 (322)
....+.+|.+|++.|++..+. .+....+|.+++|.+.+.+.+ .++...+...+++.++..++.+...++
T Consensus 335 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~~ 405 (420)
T PRK09528 335 GVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFTLSG 405 (420)
T ss_pred HHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHhcC
Confidence 335778899999999988766 566788999999999999998 677777888888777776665555543
No 69
>PRK10504 putative transporter; Provisional
Probab=99.44 E-value=2.9e-11 Score=106.24 Aligned_cols=247 Identities=14% Similarity=0.078 Sum_probs=127.6
Q ss_pred eeeeeecCCCCchhhHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHhhHHHHHHHHH-hhccCCChHHHHhcCCHHH
Q 042030 4 IYIAEITPKNIRGAFTATSQFLIVSGMSVMYLVGTIV----SWRALALIAAVPCLLQVVG-LFFIPESPRWLAKIGKEKE 78 (322)
Q Consensus 4 ~~i~e~~~~~~rg~~~~~~~~~~~~G~~l~~~~~~~~----~Wr~~f~~~~~~~~i~~~~-~~~lpesp~~l~~~~~~~~ 78 (322)
+++.|++|+++|++..++......+|..+++.+++.+ +||+.|++.....++..+. ....|+++. .+.|.|.
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~---~~~r~~~ 197 (471)
T PRK10504 121 LTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLMPNYTM---QTRRFDL 197 (471)
T ss_pred HHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCCccc---cCCCCCh
Confidence 4567899999999999999998888988888877654 8999999987776665444 445565432 1222222
Q ss_pred HHHHHHH-------H--hCCch--hhhhhHHHH----------HHhhhhcccccccchhhhcchhhHHHHHHHHHHHhhh
Q 042030 79 LETTLQC-------L--RGKTA--DISMESADI----------RDCTQTFEKDSKAGIFDLFQRRYAYSLSVGVGLMVMQ 137 (322)
Q Consensus 79 a~~~~~~-------~--~~~~~--~~~~~~~~~----------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 137 (322)
......- . .+.+. ......... ....+...+++..+. ++++++.++......++...
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~l~~~~~~~~- 275 (471)
T PRK10504 198 SGFLLLAVGMATLTLALDGSKGLGLSPLAIAGLVAVGVVALLLYLLHARNNNRALFSL-KLFRTRTFSLGLAGSFAGRI- 275 (471)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCCccCH-HHhcccchHHHHHHHHHHHH-
Confidence 2111100 0 00000 000000000 000000111111222 46666655554443333222
Q ss_pred hccchhhhHhcHHHHHHH-cCCCchhHHHHHHHHH----------------HHH-HHHHHHHHHHH---HHHHhccCCCC
Q 042030 138 PFVGSAAIAYYASYIIAA-ADLSTDIGSISMAIIQ----------------AST-IWMGLSLTIIA---LAFGLQDTHLW 196 (322)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~----------------~~~-~~~~~~~~~~~---~~~~~~~~~~~ 196 (322)
+......+.|++++. .|.+....+....... .+. .....+..+.+ ........
T Consensus 276 ---~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~--- 349 (471)
T PRK10504 276 ---GSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVAL--- 349 (471)
T ss_pred ---HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccc---
Confidence 244456677888775 5777664443332211 000 00111111111 11111110
Q ss_pred CCchhHHHHHHHHHHHHHHhhcccchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 042030 197 NEATPVLVYVGIMGFSIAFALGMAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTME 263 (322)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~ 263 (322)
. ...+.......+.+.+.+.. .+....+..+..|++.|+++.|+.+....+|..+++.+.+.+.+
T Consensus 350 ~-~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~ 414 (471)
T PRK10504 350 L-GWYYLLPFVLFLQGMVNSTR-FSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLG 414 (471)
T ss_pred c-ccHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 11121112222222333322 23346777889999999999999999999999999999998877
No 70
>PRK10054 putative transporter; Provisional
Probab=99.43 E-value=1e-11 Score=106.34 Aligned_cols=63 Identities=16% Similarity=0.166 Sum_probs=50.8
Q ss_pred eeeeeecCCCCchhhHHHHHHHHHHHHHHHHHhhhhh---hhHHHHHHhhHHHHHHHHH-hhccCCC
Q 042030 4 IYIAEITPKNIRGAFTATSQFLIVSGMSVMYLVGTIV---SWRALALIAAVPCLLQVVG-LFFIPES 66 (322)
Q Consensus 4 ~~i~e~~~~~~rg~~~~~~~~~~~~G~~l~~~~~~~~---~Wr~~f~~~~~~~~i~~~~-~~~lpes 66 (322)
++..|..|+++|++..++.....++|..+++.++..+ +||..|++.++..++..+. .+++||+
T Consensus 119 ~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~~g~~~~f~~~~~~~~i~~i~~~~~~~~~ 185 (395)
T PRK10054 119 AWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVMQSINLPFWLAAICSAFPLVFIQIWVQRS 185 (395)
T ss_pred HHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4567888999999999999999999999998888765 8999999888777766443 4456654
No 71
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=99.43 E-value=3.8e-11 Score=102.34 Aligned_cols=65 Identities=20% Similarity=0.399 Sum_probs=53.0
Q ss_pred ceeeeeecCCCCchhhHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHhhHHHHHHHH-HhhccCCCh
Q 042030 3 PIYIAEITPKNIRGAFTATSQFLIVSGMSVMYLVGTIV----SWRALALIAAVPCLLQVV-GLFFIPESP 67 (322)
Q Consensus 3 ~~~i~e~~~~~~rg~~~~~~~~~~~~G~~l~~~~~~~~----~Wr~~f~~~~~~~~i~~~-~~~~lpesp 67 (322)
.+++.|++|+++|++..++.+.+..+|..+++.++..+ +||+.|++.+++.++..+ ..+++||++
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (377)
T PRK11102 101 NALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALVFFFIPETL 170 (377)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCccC
Confidence 35678999999999999999999999999988877554 899999988887776644 456788864
No 72
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=99.40 E-value=5.5e-11 Score=104.87 Aligned_cols=248 Identities=11% Similarity=0.010 Sum_probs=128.4
Q ss_pred eeee-cCCCCchhhHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHhhHHHHHHHH-HhhccCCChHHHHhcCCHHHH
Q 042030 6 IAEI-TPKNIRGAFTATSQFLIVSGMSVMYLVGTIV----SWRALALIAAVPCLLQVV-GLFFIPESPRWLAKIGKEKEL 79 (322)
Q Consensus 6 i~e~-~~~~~rg~~~~~~~~~~~~G~~l~~~~~~~~----~Wr~~f~~~~~~~~i~~~-~~~~lpesp~~l~~~~~~~~a 79 (322)
+.+. .|+++|+++.+++.....+|..+++.+++.+ +|||.|++....+++..+ ..+++||+|+- ++++.|..
T Consensus 119 l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~--~~~~~d~~ 196 (495)
T PRK14995 119 IRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQAGR--RDQPLNLG 196 (495)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCCCC--CCCCCChH
Confidence 3344 4778999999999999999999999888766 899999998777666644 45678887531 11112211
Q ss_pred HHHHH---------HHh--CCchhhh-hhHH-------HHHH-hhhhcccccccchhhhcchhhHHHHHHHHHHHhhhhc
Q 042030 80 ETTLQ---------CLR--GKTADIS-MESA-------DIRD-CTQTFEKDSKAGIFDLFQRRYAYSLSVGVGLMVMQPF 139 (322)
Q Consensus 80 ~~~~~---------~~~--~~~~~~~-~~~~-------~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 139 (322)
..... ... ..+.... .... .... ...+.+...+.-..+++|++.........+...
T Consensus 197 g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~~~e~~~~~p~~~~~lf~~~~~~~~~~~~~~~~---- 272 (495)
T PRK14995 197 HALMLIVAILLLVYSAKTALKGFLSLWVTSLTLLTGALLLGLFIRTQLAASRPMIDMRLFTHRIILSGVVMAMTAM---- 272 (495)
T ss_pred hHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCcCHHHhCCcccHHHHHHHHHHH----
Confidence 11100 000 0000000 0000 0000 000001111111235666554443333222221
Q ss_pred cchhhhHhcHHHHHHHc-CCCchhHHHHHHHHH----------------HH-HHHHHHHHH--HHHHHHHhccCCCCCCc
Q 042030 140 VGSAAIAYYASYIIAAA-DLSTDIGSISMAIIQ----------------AS-TIWMGLSLT--IIALAFGLQDTHLWNEA 199 (322)
Q Consensus 140 ~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~----------------~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~ 199 (322)
...+...++.|.+++.. |+++..++....... .+ ......+.+ .++....... ... .
T Consensus 273 ~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~-~~~--~ 349 (495)
T PRK14995 273 ITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMT-DFS--T 349 (495)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHh-cCC--C
Confidence 23455667788888765 888775555443322 00 001111111 1111111110 000 1
Q ss_pred hhHHHHHHHHHHHHHHhhcccchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 042030 200 TPVLVYVGIMGFSIAFALGMAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTME 263 (322)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~ 263 (322)
..+.......+.+.+.+.. .+.......+..|++.++.+.++.+....+|+.+++.+.+.+.+
T Consensus 350 ~~~~~~~~~~l~G~g~g~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~ 412 (495)
T PRK14995 350 QQWQAWGLMALLGFSAASA-LLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLLS 412 (495)
T ss_pred chHHHHHHHHHHHHhHHHH-HHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1222223333333333332 23335667788899999999999999999999999999988766
No 73
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=99.39 E-value=5.2e-11 Score=102.04 Aligned_cols=65 Identities=14% Similarity=0.192 Sum_probs=52.4
Q ss_pred ceeeeeecCCCCchhhHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHhhHHHHHHHHH-hhccCCCh
Q 042030 3 PIYIAEITPKNIRGAFTATSQFLIVSGMSVMYLVGTIV----SWRALALIAAVPCLLQVVG-LFFIPESP 67 (322)
Q Consensus 3 ~~~i~e~~~~~~rg~~~~~~~~~~~~G~~l~~~~~~~~----~Wr~~f~~~~~~~~i~~~~-~~~lpesp 67 (322)
.+++.|++|+++|++..++.+....+|..+++.++..+ +||+.|++.++.+++..+. .+++||++
T Consensus 113 ~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~ 182 (392)
T PRK10473 113 FAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLSLFILKETR 182 (392)
T ss_pred HHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 45678999999999999999999888888888877554 8999999988877666444 56678864
No 74
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=99.38 E-value=5.9e-13 Score=110.16 Aligned_cols=68 Identities=28% Similarity=0.398 Sum_probs=59.0
Q ss_pred CcceeeeeecCCCCchhhHHHHHHHHHHHHHHHHHhhhhh-----hhHHHHHHhhHHHHHHHHH-hhccCCChH
Q 042030 1 MIPIYIAEITPKNIRGAFTATSQFLIVSGMSVMYLVGTIV-----SWRALALIAAVPCLLQVVG-LFFIPESPR 68 (322)
Q Consensus 1 ~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~l~~~~~~~~-----~Wr~~f~~~~~~~~i~~~~-~~~lpesp~ 68 (322)
+++++++|.+|..+|+++.+++++..++|..+|.+.+..+ .|||.|+..+++++++.++ +++.+|.+|
T Consensus 141 ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~r 214 (493)
T KOG1330|consen 141 IAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVREPER 214 (493)
T ss_pred cchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhccCccc
Confidence 4688999999999999999999999999999998888665 4999999999999988665 567788654
No 75
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=99.37 E-value=1e-10 Score=101.79 Aligned_cols=64 Identities=17% Similarity=0.213 Sum_probs=47.0
Q ss_pred eeeeeec-CCCCchhhHHHHHHHHHHHHHHHHHhhh-----------hhhhHHHHHHhhHHHHHHHHH-hhccCCCh
Q 042030 4 IYIAEIT-PKNIRGAFTATSQFLIVSGMSVMYLVGT-----------IVSWRALALIAAVPCLLQVVG-LFFIPESP 67 (322)
Q Consensus 4 ~~i~e~~-~~~~rg~~~~~~~~~~~~G~~l~~~~~~-----------~~~Wr~~f~~~~~~~~i~~~~-~~~lpesp 67 (322)
++..|.. ++++|++..++.+.+..+|.++++.+.. ..+||+.+++.++++++..+. .+++||.+
T Consensus 122 al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~ 198 (437)
T TIGR00792 122 SLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLIICFFGTKERY 198 (437)
T ss_pred hCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHHHHcCCEecC
Confidence 4667887 4689999999998888888766544321 237999999988887776544 56678764
No 76
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=99.37 E-value=2.8e-10 Score=97.14 Aligned_cols=227 Identities=14% Similarity=0.041 Sum_probs=118.0
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHhhHHHHHHHHHhhccCCChHHHHhcCCHHHHHHHHHHHh
Q 042030 12 KNIRGAFTATSQFLIVSGMSVMYLVGTIV----SWRALALIAAVPCLLQVVGLFFIPESPRWLAKIGKEKELETTLQCLR 87 (322)
Q Consensus 12 ~~~rg~~~~~~~~~~~~G~~l~~~~~~~~----~Wr~~f~~~~~~~~i~~~~~~~lpesp~~l~~~~~~~~a~~~~~~~~ 87 (322)
+++|++..+....+.++|..+++.++..+ |||..|++.++..++..+..++.||.++ ++++++
T Consensus 123 ~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~----~~~~~~--------- 189 (382)
T PRK11128 123 QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWILTAGVASMLLGQLLRPTIMP----QGESRQ--------- 189 (382)
T ss_pred HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHccCCCCC----cccccc---------
Confidence 35577777777777777777777777654 9999998877655544444445565421 010000
Q ss_pred CCchhhhhhHHHHHHhhhhcccccccchhhhcchhhHHHHHHHHHHHhhhhccchhhhHhcHHHHHHHcCCCchhHHHHH
Q 042030 88 GKTADISMESADIRDCTQTFEKDSKAGIFDLFQRRYAYSLSVGVGLMVMQPFVGSAAIAYYASYIIAAADLSTDIGSISM 167 (322)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 167 (322)
+.++...++++++|++..+......++... .......+.|.+.++.|.+....+...
T Consensus 190 -------------------~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~g~s~~~~g~~~ 246 (382)
T PRK11128 190 -------------------QESAGWPAWKALLKEPTVWRFLLCVSLLQG----SHAAYYGFSAIYWQAAGYSASTIGYLW 246 (382)
T ss_pred -------------------ccccccchHHHHHcChhHHHHHHHHHHHHH----HhHhHHHHHHHHHHHCCCCHhHHHHHH
Confidence 000112356777777666655443333222 133344555666777788766444443
Q ss_pred HHHH----------------H-HHHHHHHHHHHHHHHHHhccCCCCCCchhHHHHHHHHHHHHHHhhcccchhhhhhccc
Q 042030 168 AIIQ----------------A-STIWMGLSLTIIALAFGLQDTHLWNEATPVLVYVGIMGFSIAFALGMAGLPSVIMAEI 230 (322)
Q Consensus 168 ~~~~----------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 230 (322)
++.. . ....+..+....+......... .+.+..++..++.+.+++.. .+....+..+.
T Consensus 247 ~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~ 321 (382)
T PRK11128 247 SLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGST----TALPWLIVIQILHCGTFTVC-HLAAMRYIAAR 321 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHC
Confidence 3222 0 0011111222212111111110 22344444444444444433 33445666676
Q ss_pred cCccccchhHHHHHHH-HHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHH
Q 042030 231 FPINIKGSAGSLVILL-HNCSNWIVTYTFHFTMEWSRTGTFSIFWVICAAA 280 (322)
Q Consensus 231 ~p~~~r~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (322)
+++.+++..+..+.. ..+|..++|.+.+.+.+......++..+++.+++
T Consensus 322 -~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~~~~~~~~~~~~~~ 371 (382)
T PRK11128 322 -PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGAGVFWVMALVALPA 371 (382)
T ss_pred -CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 555568888877644 4567789999999999832234455555544433
No 77
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=99.36 E-value=1.7e-10 Score=98.87 Aligned_cols=237 Identities=17% Similarity=0.150 Sum_probs=129.7
Q ss_pred eeeeeecCCCCchhhHHHHHHHHHHHHHH----HHHhhh------------------hhhhHHHHHHhhHHHHHHHHH-h
Q 042030 4 IYIAEITPKNIRGAFTATSQFLIVSGMSV----MYLVGT------------------IVSWRALALIAAVPCLLQVVG-L 60 (322)
Q Consensus 4 ~~i~e~~~~~~rg~~~~~~~~~~~~G~~l----~~~~~~------------------~~~Wr~~f~~~~~~~~i~~~~-~ 60 (322)
..+++|+|+++||++.++.....++|..+ ++.+.. ..+||...++-.++.++..++ +
T Consensus 150 ~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~ 229 (462)
T PRK15034 150 GNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAW 229 (462)
T ss_pred HHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678999999999999996555555544 433221 224888888877777666544 4
Q ss_pred hccCCChHHHHhcCCHHHHHHHHHHHhCCchhhhhhHHHHHHhhhhcccccccchhhhcchhhHHHHHHHHHHHhhhhcc
Q 042030 61 FFIPESPRWLAKIGKEKELETTLQCLRGKTADISMESADIRDCTQTFEKDSKAGIFDLFQRRYAYSLSVGVGLMVMQPFV 140 (322)
Q Consensus 61 ~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 140 (322)
++++|.|. .+. +....++.+|+++.|..... .++.+.
T Consensus 230 ~~~~~~~~---~~~------------------------------------~~~~~~~vlk~~~~Wllsll----y~~tFG 266 (462)
T PRK15034 230 SGMNDIAS---SRA------------------------------------SIADQLPVLQRLHLWLLSLL----YLATFG 266 (462)
T ss_pred HhCCCccc---ccc------------------------------------CHHHHHHHhCCCchhHHHHH----HHHHHH
Confidence 45555432 000 11234456666655544333 233444
Q ss_pred chhhhHhcHHHHHHHcCCCch---hHHHHHHHHH-------------H-HHHHHHHH---HHHHH--HHHHhccCCCCCC
Q 042030 141 GSAAIAYYASYIIAAADLSTD---IGSISMAIIQ-------------A-STIWMGLS---LTIIA--LAFGLQDTHLWNE 198 (322)
Q Consensus 141 ~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~-------------~-~~~~~~~~---~~~~~--~~~~~~~~~~~~~ 198 (322)
++.++.++.|++.++. ++.. ....+..+.. . ....+.++ +.+.. .....+.. ..
T Consensus 267 ~fvg~s~~lp~~~~~~-~~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp~~---~~ 342 (462)
T PRK15034 267 SFIGFSAGFAMLAKTQ-FPDVNILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLPGT---GS 342 (462)
T ss_pred HHHHHHHHHHHHHHHH-cChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhccc---cc
Confidence 5667788888887763 3222 1111111111 0 01111111 11111 11111111 01
Q ss_pred chhHHHHHHHHHHHHHHhhcccchhhhhhccccCc---------------------cccchhHHHHHHHHHHHHHHHHHH
Q 042030 199 ATPVLVYVGIMGFSIAFALGMAGLPSVIMAEIFPI---------------------NIKGSAGSLVILLHNCSNWIVTYT 257 (322)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~---------------------~~r~~~~~~~~~~~~~g~~~~~~~ 257 (322)
...+...........+.+.+.+++ +-+++..+|+ +.-|...|++.+.+.+|+++.|.+
T Consensus 343 ~~~~~~~~~~~~l~~~~G~gngsv-fk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~ 421 (462)
T PRK15034 343 GNFIAFYAVFMGLFLTAGLGSGST-FQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQA 421 (462)
T ss_pred cHHHHHHHHHHHHHHHhcccchHH-HHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHH
Confidence 122333333332233444444444 6677788874 134678889999999999999999
Q ss_pred HHHHHH--hhhcchhHHHHHHHHHHHHHHHhhc
Q 042030 258 FHFTME--WSRTGTFSIFWVICAAAVLFVAFLV 288 (322)
Q Consensus 258 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (322)
++...+ .++...+..+.++.+++.++.+.+.
T Consensus 422 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~y 454 (462)
T PRK15034 422 FGMSLNMTGSPVGAMKVFLIFYIVCVLLTWLVY 454 (462)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 988877 3455567888888888887776643
No 78
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=99.35 E-value=1.2e-10 Score=100.30 Aligned_cols=75 Identities=13% Similarity=0.104 Sum_probs=60.1
Q ss_pred cchhhhhhccccCccccchhHHHHH-HHHHHHHHHHHHHHHHHHH-hh------hcchhHHHHHHHHHHHHHHHhhccCC
Q 042030 220 AGLPSVIMAEIFPINIKGSAGSLVI-LLHNCSNWIVTYTFHFTME-WS------RTGTFSIFWVICAAAVLFVAFLVPET 291 (322)
Q Consensus 220 ~~~~~~~~~e~~p~~~r~~~~~~~~-~~~~~g~~~~~~~~~~~~~-~~------~~~~~~~~~~~~~~~~~~~~~~~~et 291 (322)
.+....+++|.+|++.|+++.|+.+ ....+|.+++|.+.+.+.+ .+ +...+.+.+++.++++++.+++.||+
T Consensus 326 ~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~ 405 (418)
T TIGR00889 326 NISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYS 405 (418)
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 4455678899999999999999997 5678999999999999888 32 44667777778788888788888877
Q ss_pred CCC
Q 042030 292 KGR 294 (322)
Q Consensus 292 ~~~ 294 (322)
.+.
T Consensus 406 ~~~ 408 (418)
T TIGR00889 406 HNA 408 (418)
T ss_pred ccC
Confidence 544
No 79
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=99.35 E-value=2.7e-10 Score=97.73 Aligned_cols=216 Identities=16% Similarity=0.110 Sum_probs=117.8
Q ss_pred eeeeecCCCCchhhHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHhhHHHHHHH-HHhhccCCChHHHHhcCCHHHH
Q 042030 5 YIAEITPKNIRGAFTATSQFLIVSGMSVMYLVGTIV----SWRALALIAAVPCLLQV-VGLFFIPESPRWLAKIGKEKEL 79 (322)
Q Consensus 5 ~i~e~~~~~~rg~~~~~~~~~~~~G~~l~~~~~~~~----~Wr~~f~~~~~~~~i~~-~~~~~lpesp~~l~~~~~~~~a 79 (322)
+..|.+++++|++..+..+.+..+|..+++.++..+ +||+.|++.++..++.. +..+++||+++. ++++++
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~- 195 (394)
T PRK11652 120 LPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFSMARWMPETRPA---DARRTR- 195 (394)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHhCCccCcc---ccchhH-
Confidence 456788889999999999999998888888777554 89999999887766554 345678887531 000000
Q ss_pred HHHHHHHhCCchhhhhhHHHHHHhhhhcccccccchhhhcchhhHHHHHHHHHHHhhhhccchhhhHhcHHHHHHH-cCC
Q 042030 80 ETTLQCLRGKTADISMESADIRDCTQTFEKDSKAGIFDLFQRRYAYSLSVGVGLMVMQPFVGSAAIAYYASYIIAA-ADL 158 (322)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~ 158 (322)
.+..+++.++++..+.......... .+......+.+.++++ .|.
T Consensus 196 -------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~ 240 (394)
T PRK11652 196 -------------------------------VLASYRTLLSNRRFNCYLLMLIGTL----AGIAVFEACSGVLMGAVLGL 240 (394)
T ss_pred -------------------------------HHHHHHHHHcChHHHHHHHHHHHHH----HHHHHHHHhChHHHHHHcCC
Confidence 1112344555554443333222211 1223334445556665 577
Q ss_pred CchhHHHHHHHHH----------------HH-HHHHHHHHHHHHHHH-HhccCCCCCCchhHHHHHHHHHHHHHHhhccc
Q 042030 159 STDIGSISMAIIQ----------------AS-TIWMGLSLTIIALAF-GLQDTHLWNEATPVLVYVGIMGFSIAFALGMA 220 (322)
Q Consensus 159 ~~~~~~~~~~~~~----------------~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (322)
+....+....... .. .....+.+...+... ...... .....+.......+...+.+. ..
T Consensus 241 ~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~-~~ 317 (394)
T PRK11652 241 SSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPGWF--GVMNVWTLLVPAALFFFGAGM-LF 317 (394)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccccHHHHHHHHHHHHHHHHH-HH
Confidence 7654443332211 10 000111111111111 111000 001122233333333333333 34
Q ss_pred chhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 042030 221 GLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTME 263 (322)
Q Consensus 221 ~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~ 263 (322)
+....+..|.+| +.++++.++.+....+|+.+++.+.+.+..
T Consensus 318 ~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~ 359 (394)
T PRK11652 318 PLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLPQ 359 (394)
T ss_pred HHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 555677788887 578999999999999999999998876654
No 80
>PRK03633 putative MFS family transporter protein; Provisional
Probab=99.32 E-value=7.1e-10 Score=94.68 Aligned_cols=64 Identities=9% Similarity=0.015 Sum_probs=49.3
Q ss_pred ccchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH-hhhcchhHHHHHHHHHHHH
Q 042030 219 MAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTME-WSRTGTFSIFWVICAAAVL 282 (322)
Q Consensus 219 ~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 282 (322)
..|....+..|..|++.++...+..+...++|..++|.+.+.+.+ .++...|.+.+.+.++..+
T Consensus 302 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~ 366 (381)
T PRK03633 302 LYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYLL 366 (381)
T ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHH
Confidence 456667778899988887777788788888999999999999988 6666666766666654433
No 81
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=99.32 E-value=2.5e-10 Score=100.00 Aligned_cols=242 Identities=14% Similarity=0.085 Sum_probs=136.1
Q ss_pred eeeeeecCCCCchhhHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHhhHHHHHHHHHhhccCCChHHHHhcCCHHHH
Q 042030 4 IYIAEITPKNIRGAFTATSQFLIVSGMSVMYLVGTIV----SWRALALIAAVPCLLQVVGLFFIPESPRWLAKIGKEKEL 79 (322)
Q Consensus 4 ~~i~e~~~~~~rg~~~~~~~~~~~~G~~l~~~~~~~~----~Wr~~f~~~~~~~~i~~~~~~~lpesp~~l~~~~~~~~a 79 (322)
+++.|..|+++...+.++.+...++..++||.+++.+ |-.+.|++.++.-++........+..++ .+...+
T Consensus 126 A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~l~~~~~~~~---~~~~~~-- 200 (524)
T PF05977_consen 126 AIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFFGAAAAFLINALSFLISILALLRWKPPPP---PSSLPR-- 200 (524)
T ss_pred HHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc---ccccch--
Confidence 4567899999999999999998888888888877665 7788888877765554433333332211 000000
Q ss_pred HHHHHHHhCCchhhhhhHHHHHHhhhhcccccccchhhhcchhhHHHHHHHHHHHhhhhccchhhhHhcHHHHHHH-cCC
Q 042030 80 ETTLQCLRGKTADISMESADIRDCTQTFEKDSKAGIFDLFQRRYAYSLSVGVGLMVMQPFVGSAAIAYYASYIIAA-ADL 158 (322)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~ 158 (322)
++..+ .-+..++-+.+++..+..+....+..+ . ...+...+|.+.++ .|.
T Consensus 201 e~~~~-------------------------~l~~G~ryv~~~~~l~~~l~~~~~~~l---~-~~a~~aLlPl~a~~~l~~ 251 (524)
T PF05977_consen 201 ERFFS-------------------------ALREGLRYVRSSPPLRSVLLRSFLFNL---F-ASAVWALLPLFARDVLGG 251 (524)
T ss_pred hhhhh-------------------------hHHHHHHHHhcchHHHHHHHHHHHHHH---h-hhHHHHhhhHHHHHHhCC
Confidence 00000 011234444444444444332222221 1 22334456777765 477
Q ss_pred CchhHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHhccCCCCCCchhHHHHHHHHHHHHHHhhcccc
Q 042030 159 STDIGSISMAIIQAST-----------------IWMGLSLTIIALAFGLQDTHLWNEATPVLVYVGIMGFSIAFALGMAG 221 (322)
Q Consensus 159 ~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (322)
+....+++.+...++. ..+..+.+..+......... .+.+.....+++.+.+... ...
T Consensus 252 ~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~----~~~~~~~~~l~l~G~~~~~-~~~ 326 (524)
T PF05977_consen 252 GASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALS----PSFWLALIALFLAGAAWII-ANS 326 (524)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcc----hHHHHHHHHHHHHHHHHHH-HHH
Confidence 7766666555544110 01111222222221111110 2233334444433333332 333
Q ss_pred hhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH-hhhcchhHHHHHHHHHHHHHH
Q 042030 222 LPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTME-WSRTGTFSIFWVICAAAVLFV 284 (322)
Q Consensus 222 ~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 284 (322)
...+...+..|++.||+..++..+....+..++..+.|.+.+ .+....+.+.++..+++.++.
T Consensus 327 ~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~ 390 (524)
T PF05977_consen 327 SLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIA 390 (524)
T ss_pred HHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence 446778899999999999999999999999999999999988 666666666555555554443
No 82
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=99.29 E-value=8.4e-10 Score=89.10 Aligned_cols=231 Identities=14% Similarity=0.126 Sum_probs=137.5
Q ss_pred ceeeeeecCCCCchhhHHHHHHHHHHHHHHHHHhhhhh-----hhHHHHHHhhHHHHHHHHHhhccCCChHHHHhcCCHH
Q 042030 3 PIYIAEITPKNIRGAFTATSQFLIVSGMSVMYLVGTIV-----SWRALALIAAVPCLLQVVGLFFIPESPRWLAKIGKEK 77 (322)
Q Consensus 3 ~~~i~e~~~~~~rg~~~~~~~~~~~~G~~l~~~~~~~~-----~Wr~~f~~~~~~~~i~~~~~~~lpesp~~l~~~~~~~ 77 (322)
|..+-+.+|+ +-+..++++....+.|..+++.++-.+ +||....+-+.++++.++.++.-. .|. ...+
T Consensus 121 PslIK~~Fpk-~~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~allAl~~WlPq~--~r~----~~~~ 193 (395)
T COG2807 121 PSLIKRDFPK-RVGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALLALLALLIWLPQA--LRE----QAAS 193 (395)
T ss_pred hHHHHhhccc-chhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHHHHHhhhc--ccc----cccc
Confidence 5556666765 469999999999999888887766444 799999999999988877664321 110 0000
Q ss_pred HHHHHHHHHhCCchhhhhhHHHHHHhhhhcccccccchhhhcchhhHHHHHHHHHHHhhhhccchhhhHhcHHHHHHHcC
Q 042030 78 ELETTLQCLRGKTADISMESADIRDCTQTFEKDSKAGIFDLFQRRYAYSLSVGVGLMVMQPFVGSAAIAYYASYIIAAAD 157 (322)
Q Consensus 78 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 157 (322)
.+.+..+-..++|++.-|.+.+.+.++. ..+|....|+|.++.+.|
T Consensus 194 ------------------------------~~~~~~~~~~vw~~~~aW~vtLfmGlqS----~~~Y~~~~WLP~ili~~G 239 (395)
T COG2807 194 ------------------------------IATKLVSVRKVWRSPLAWQVTLFMGLQS----LLYYIVIGWLPAILIDRG 239 (395)
T ss_pred ------------------------------cccccccccccccCchhHHHHHHHHhhH----HHHHHHHHHHHHHHHHcC
Confidence 1112233456788877676665544433 468899999999999999
Q ss_pred CCchhHHHHHHHHH--------------------HHHHHHHHHHHHHHHHH--HhccCCCCCCchhHHHHHHHHHHHHHH
Q 042030 158 LSTDIGSISMAIIQ--------------------ASTIWMGLSLTIIALAF--GLQDTHLWNEATPVLVYVGIMGFSIAF 215 (322)
Q Consensus 158 ~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (322)
++...++.+.++.+ .........+...+.+- ..+. ...+.. ..+++.+.
T Consensus 240 ~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~------~~~~lw---~~llG~G~ 310 (395)
T COG2807 240 LSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPG------QLPILW---ALLLGLGQ 310 (395)
T ss_pred CCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhh------hHHHHH---HHHHhCcc
Confidence 99998887777665 00111111111112111 1111 112222 11112111
Q ss_pred hhcccchhhhhhcccc-CccccchhHHHHHHHHHHHHHHHHHHHHHHHH--hhhcchhHHHHHHHHHHHHHH
Q 042030 216 ALGMAGLPSVIMAEIF-PINIKGSAGSLVILLHNCSNWIVTYTFHFTME--WSRTGTFSIFWVICAAAVLFV 284 (322)
Q Consensus 216 ~~~~~~~~~~~~~e~~-p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 284 (322)
.+..++....+.... .++.-+.-.|+.+.++++-+.++|.++|.+.| .++......+..+.++..+..
T Consensus 311 -G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~m~i~G 381 (395)
T COG2807 311 -GGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATLLMLIFG 381 (395)
T ss_pred -chHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHHHHHHHH
Confidence 123344445555443 34455677788999999999999999999999 333334444444444444433
No 83
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=99.25 E-value=1.1e-09 Score=93.95 Aligned_cols=63 Identities=6% Similarity=0.033 Sum_probs=50.3
Q ss_pred hhhhhccccCccccchhHHH-HHHHHHHHHHHHHHHHHHHHH-hhhcchhHHHHHHHHHHHHHHH
Q 042030 223 PSVIMAEIFPINIKGSAGSL-VILLHNCSNWIVTYTFHFTME-WSRTGTFSIFWVICAAAVLFVA 285 (322)
Q Consensus 223 ~~~~~~e~~p~~~r~~~~~~-~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 285 (322)
...+..+..|++.++++.+. .+....+|+++++.+.+.+.+ .++...|.+.+++.++.+++..
T Consensus 328 ~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~~~ 392 (396)
T TIGR00882 328 CFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLISV 392 (396)
T ss_pred HHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence 34567788898998888776 567889999999999999998 6777888888887777666543
No 84
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=99.24 E-value=1.5e-09 Score=91.83 Aligned_cols=211 Identities=12% Similarity=0.116 Sum_probs=111.2
Q ss_pred eeeeeecCCCCchhhHHHHHHHHHHHHHHHHHhhhhh------hhHHHHHHhhHHHHHHHHHhhccCCChHHHHhcCCHH
Q 042030 4 IYIAEITPKNIRGAFTATSQFLIVSGMSVMYLVGTIV------SWRALALIAAVPCLLQVVGLFFIPESPRWLAKIGKEK 77 (322)
Q Consensus 4 ~~i~e~~~~~~rg~~~~~~~~~~~~G~~l~~~~~~~~------~Wr~~f~~~~~~~~i~~~~~~~lpesp~~l~~~~~~~ 77 (322)
.++.|+.| ++|+++.++.+.+..+|..+++.++..+ +||+.|.+.++..++... .++||+++ +.+
T Consensus 110 ~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~~~~--~~~~~~~~------~~~ 180 (355)
T TIGR00896 110 SLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALLALL--AWIPQVRR------RVA 180 (355)
T ss_pred HHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH--HHhhhhcc------ccC
Confidence 35567775 6899999999999999888887766443 399998876655443322 23444321 000
Q ss_pred HHHHHHHHHhCCchhhhhhHHHHHHhhhhcccccccchhhhcchhhHHHHHHHHHHHhhhhccchhhhHhcHHHHHHHcC
Q 042030 78 ELETTLQCLRGKTADISMESADIRDCTQTFEKDSKAGIFDLFQRRYAYSLSVGVGLMVMQPFVGSAAIAYYASYIIAAAD 157 (322)
Q Consensus 78 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 157 (322)
+ + ++..+...++++|++..+.......+ ....++....+.|.++++.|
T Consensus 181 ~-----------~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~lp~~~~~~g 228 (355)
T TIGR00896 181 A-----------N-----------------QTTTRLTPVRIWRSPLAWQVTVFFGL----QSGLYYSLIGWLPAILISHG 228 (355)
T ss_pred C-----------C-----------------CCCCCCCCchhhcCHhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHcC
Confidence 0 0 00011234455665544433332222 22235566778898888888
Q ss_pred CCchhHHHHHHHHH----------------H-HHH-HHHHHHH--HHHHHHHhccCCCCCCchhHHHHHHHHHHHHHHhh
Q 042030 158 LSTDIGSISMAIIQ----------------A-STI-WMGLSLT--IIALAFGLQDTHLWNEATPVLVYVGIMGFSIAFAL 217 (322)
Q Consensus 158 ~~~~~~~~~~~~~~----------------~-~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (322)
.+....+...+... . ... ....... .++......... . .... ...+++.+.+
T Consensus 229 ~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~----~--~~~~-~~~l~g~~~g- 300 (355)
T TIGR00896 229 ASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPM----H--GLWA-WALVLGLGQG- 300 (355)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhh----h--HHHH-HHHHHHHhhh-
Confidence 87765444443332 1 000 1111111 111111111100 0 1111 1122222221
Q ss_pred cccchhhhhhccc-cCccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 042030 218 GMAGLPSVIMAEI-FPINIKGSAGSLVILLHNCSNWIVTYTFHFTME 263 (322)
Q Consensus 218 ~~~~~~~~~~~e~-~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~ 263 (322)
...+.......+. .+++.++...++.+..++++..++|.+.+.+.+
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~ 347 (355)
T TIGR00896 301 GAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHD 347 (355)
T ss_pred hHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2233334444443 445677888999999999999999999999888
No 85
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=99.24 E-value=6.1e-11 Score=103.36 Aligned_cols=266 Identities=14% Similarity=0.106 Sum_probs=144.7
Q ss_pred ecCCCCchhhHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHhhHHHHHHHHH-hhccCCChHHHHhcCCHHHHHHHH
Q 042030 9 ITPKNIRGAFTATSQFLIVSGMSVMYLVGTIV----SWRALALIAAVPCLLQVVG-LFFIPESPRWLAKIGKEKELETTL 83 (322)
Q Consensus 9 ~~~~~~rg~~~~~~~~~~~~G~~l~~~~~~~~----~Wr~~f~~~~~~~~i~~~~-~~~lpesp~~l~~~~~~~~a~~~~ 83 (322)
.+.+|+|+.+.++...+..+|..+-+.+...+ |||+.+++.+.+.+-..+. ...-|.+++-... .++..+..
T Consensus 162 ~YF~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~---~~~~~~~~ 238 (509)
T KOG2504|consen 162 TYFEKKRALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRPLSPPKKPN---EEKDLRNS 238 (509)
T ss_pred hHhHHHHHHHHhhhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCCCCcCCCch---hhhhhccc
Confidence 45578899999999999999988877777655 9999998877776555444 3333433321000 00000000
Q ss_pred H------------HHhCCchhhh----hhHHHHHHhhhhcc-cccccch----hhhcchhhHHHHHHHHHHHhhhhccch
Q 042030 84 Q------------CLRGKTADIS----MESADIRDCTQTFE-KDSKAGI----FDLFQRRYAYSLSVGVGLMVMQPFVGS 142 (322)
Q Consensus 84 ~------------~~~~~~~~~~----~~~~~~~~~~~~~~-~~~~~~~----~~l~~~~~~~~~~~~~~~~~~~~~~~~ 142 (322)
+ +....+.... .+..+.++..++.+ ...+... .++++++.... +.+.......++
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~~~fl~----~~~~~~~~~~g~ 314 (509)
T KOG2504|consen 239 AASVESTPKPVELRISERDSGLKKLSLSNLATLKRGPDKWRNSPLQAFLSMLDLSLLKDPKFLL----LALSNLFAYLGF 314 (509)
T ss_pred cccccccccccccccccCCCCCCcccccchhhhhhCCccccccchhhhhhhhhHHHHcCchHHH----HHHHHHHHHHHH
Confidence 0 0000000000 01111111111111 0111112 35565533332 333333344467
Q ss_pred hhhHhcHHHHHHHcCCCchhHHHHHHHHH------------------H-HHHHHHHHHHHHHHHH--HhccCCCCCCchh
Q 042030 143 AAIAYYASYIIAAADLSTDIGSISMAIIQ------------------A-STIWMGLSLTIIALAF--GLQDTHLWNEATP 201 (322)
Q Consensus 143 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~------------------~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 201 (322)
+....++|.+.++.|++...+..+.++.+ . ......++.+..++.. ..... .
T Consensus 315 ~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~-------~ 387 (509)
T KOG2504|consen 315 NVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFAT-------T 387 (509)
T ss_pred HHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHhc-------c
Confidence 77888889989988999887777777666 0 1111111222222211 11111 1
Q ss_pred HHHHHHHHHHHHHHhhcccchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH-hh-hcchhHHHHHHHHH
Q 042030 202 VLVYVGIMGFSIAFALGMAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTME-WS-RTGTFSIFWVICAA 279 (322)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~ 279 (322)
...+...+++.+.............+.|+.+.+.-+.+.|+...+..++..++|.+.+.+.+ .+ +...|...++..++
T Consensus 388 ~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~ 467 (509)
T KOG2504|consen 388 YVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLL 467 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHH
Confidence 22222222222222222344445688899999999999999999999999999999998888 44 56666666666666
Q ss_pred HHHHHHhhcc
Q 042030 280 AVLFVAFLVP 289 (322)
Q Consensus 280 ~~~~~~~~~~ 289 (322)
++.+ ++..+
T Consensus 468 s~~~-~~~~~ 476 (509)
T KOG2504|consen 468 SAVL-LLILR 476 (509)
T ss_pred HHHH-HHHhH
Confidence 6654 33344
No 86
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=99.23 E-value=4.9e-09 Score=90.60 Aligned_cols=75 Identities=13% Similarity=0.035 Sum_probs=56.5
Q ss_pred ccchhhhhhccccCcc--ccchhHHHHHHHHHHHHHHHHHHHHHHHH-h--hhcchhHHHHHHHHHHHHHHHhhccCCCC
Q 042030 219 MAGLPSVIMAEIFPIN--IKGSAGSLVILLHNCSNWIVTYTFHFTME-W--SRTGTFSIFWVICAAAVLFVAFLVPETKG 293 (322)
Q Consensus 219 ~~~~~~~~~~e~~p~~--~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~et~~ 293 (322)
...++++++++..|++ ..|..+|+.|.+-.+..++.....+.+.+ . +....+.+-++..++++++.++.+|+++.
T Consensus 397 ~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~~~~ 476 (477)
T TIGR01301 397 TYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPRPRV 476 (477)
T ss_pred HHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 4567789999988854 44888999999999999999888887555 2 23445666667777778888888887654
No 87
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=99.20 E-value=3.7e-09 Score=87.23 Aligned_cols=222 Identities=12% Similarity=0.063 Sum_probs=117.1
Q ss_pred ceeeeeecCCCCchhhHHHHHHHHHHHHHHHHHhhhh--------------------hhhHHHHHHhhHHHHHHHHHh--
Q 042030 3 PIYIAEITPKNIRGAFTATSQFLIVSGMSVMYLVGTI--------------------VSWRALALIAAVPCLLQVVGL-- 60 (322)
Q Consensus 3 ~~~i~e~~~~~~rg~~~~~~~~~~~~G~~l~~~~~~~--------------------~~Wr~~f~~~~~~~~i~~~~~-- 60 (322)
..|+++..|++++.+.+++.+.++.+|..++|.++.. .+||+++++.+...++..+.+
T Consensus 32 n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~yl~ia~~~~~~~i~~~~ 111 (310)
T TIGR01272 32 NPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATANAEAAKVHTPYLLLAGALAVLAIIFAF 111 (310)
T ss_pred HHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788899999999999999999999999988862 269999986555544443333
Q ss_pred hccCCChHHHHhcCCHHHHHHHHHHHhCCchhhhhhHHHHHHhhhhcccccccchhhhcchhhHHHHHHHHHHHhhhhcc
Q 042030 61 FFIPESPRWLAKIGKEKELETTLQCLRGKTADISMESADIRDCTQTFEKDSKAGIFDLFQRRYAYSLSVGVGLMVMQPFV 140 (322)
Q Consensus 61 ~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 140 (322)
..+||..+ ++.++. . ++ +....++.++++..+ +. .+..+....
T Consensus 112 ~~~p~~~~-----~~~~~~------------------------~---~~-~~~~~~~~~~~~~~~---l~-~~~~f~yvg 154 (310)
T TIGR01272 112 LPLPELQE-----ADVARV------------------------S---SG-DTTQKTSAFQFTHLV---LG-ALGIFVYVG 154 (310)
T ss_pred ccCCCCCc-----cccccc------------------------c---cc-cccchhhHHhhHHHH---HH-HHHHHHHHH
Confidence 33566321 000000 0 00 000111233333222 22 222222222
Q ss_pred chhhhHhcHHHHHHHc---CCCchhHHHHHHHHH----------------HH-HHHHHHHHH--HHHHHHHhccCCCCCC
Q 042030 141 GSAAIAYYASYIIAAA---DLSTDIGSISMAIIQ----------------AS-TIWMGLSLT--IIALAFGLQDTHLWNE 198 (322)
Q Consensus 141 ~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~----------------~~-~~~~~~~~~--~~~~~~~~~~~~~~~~ 198 (322)
.-..+..|.+.++++. |++....+...+... .+ .....++.. ..+........
T Consensus 155 ~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~----- 229 (310)
T TIGR01272 155 AEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTH----- 229 (310)
T ss_pred HHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcC-----
Confidence 3456677888888643 777654444433332 00 001111111 11111111111
Q ss_pred chhHHHHHHHHHHHHHHhhcccchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH-hhhcchhH
Q 042030 199 ATPVLVYVGIMGFSIAFALGMAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTME-WSRTGTFS 271 (322)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~ 271 (322)
. ........+.+ .+.....|.......+.+|++ .+++.++. ..+.+|+.+.|.+.+.+.| .+...+++
T Consensus 230 ~--~~~~~~~~l~g-~~~s~i~P~~~s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~ 298 (310)
T TIGR01272 230 G--YVAMWFVLALG-LFNSIMFPTIFSLALNALGRH-TSQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFA 298 (310)
T ss_pred C--HHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhhh-hhhhHHHH-HHHHhcchHHHHHHHHHHHhccchHHHH
Confidence 1 11122222223 223335566677777877764 35666664 6788999999999999888 56555554
No 88
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=99.18 E-value=3.8e-10 Score=95.76 Aligned_cols=66 Identities=21% Similarity=0.215 Sum_probs=43.8
Q ss_pred ceeeeeecCCCCchhhHHHHHHHHHHHHHHHHHhh----hh----------hhhHHHH-HHhhHHHHH-HHHHhhccCCC
Q 042030 3 PIYIAEITPKNIRGAFTATSQFLIVSGMSVMYLVG----TI----------VSWRALA-LIAAVPCLL-QVVGLFFIPES 66 (322)
Q Consensus 3 ~~~i~e~~~~~~rg~~~~~~~~~~~~G~~l~~~~~----~~----------~~Wr~~f-~~~~~~~~i-~~~~~~~lpes 66 (322)
..+++|++|+++|++..++...+..+|..+++.++ .. .+||+.| +..++...+ ..+...+.+|+
T Consensus 112 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (366)
T TIGR00886 112 MPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGILLLPALLIFFVGADT 191 (366)
T ss_pred HHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHhcccC
Confidence 34678999999999999998866666655554443 22 2699999 443444433 34445667776
Q ss_pred hH
Q 042030 67 PR 68 (322)
Q Consensus 67 p~ 68 (322)
|+
T Consensus 192 ~~ 193 (366)
T TIGR00886 192 PP 193 (366)
T ss_pred Cc
Confidence 64
No 89
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=99.18 E-value=1.5e-08 Score=88.03 Aligned_cols=78 Identities=17% Similarity=0.321 Sum_probs=60.4
Q ss_pred hhcccchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH-hh-hcchhHHHHHHHHHHHHHHHhhccCCCC
Q 042030 216 ALGMAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTME-WS-RTGTFSIFWVICAAAVLFVAFLVPETKG 293 (322)
Q Consensus 216 ~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~et~~ 293 (322)
..+..+..-++.+|+.|+...+..+|+....++..++++|.+++.+.+ .+ ....+....++.+++.++. ..+++.|+
T Consensus 394 ~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll-~~v~~~~g 472 (477)
T PF11700_consen 394 MGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILL-FFVDVEKG 472 (477)
T ss_pred hhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHH-hhccchhh
Confidence 334567778999999999999999999999999999999999999998 33 4566666666666665544 44555444
Q ss_pred C
Q 042030 294 R 294 (322)
Q Consensus 294 ~ 294 (322)
+
T Consensus 473 ~ 473 (477)
T PF11700_consen 473 R 473 (477)
T ss_pred h
Confidence 4
No 90
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=99.17 E-value=5.7e-09 Score=89.73 Aligned_cols=210 Identities=13% Similarity=-0.011 Sum_probs=111.8
Q ss_pred eeeeeecCCCCchhhHHHHHHHHHHHHHHHHHhhhhh------------------------------hhHHHHHHhhHHH
Q 042030 4 IYIAEITPKNIRGAFTATSQFLIVSGMSVMYLVGTIV------------------------------SWRALALIAAVPC 53 (322)
Q Consensus 4 ~~i~e~~~~~~rg~~~~~~~~~~~~G~~l~~~~~~~~------------------------------~Wr~~f~~~~~~~ 53 (322)
.++.|..|+++|++..++.+....+|..+++.++..+ +||++|++.+++.
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~ 196 (410)
T TIGR00885 117 PYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVV 196 (410)
T ss_pred HHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667888999999999999999999998888776433 5999999888776
Q ss_pred HHHHHHhh--ccCCChHHHHhcCCHHHHHHHHHHHhCCchhhhhhHHHHHHhhhhcccccccchhhhcchhhHHHHHHHH
Q 042030 54 LLQVVGLF--FIPESPRWLAKIGKEKELETTLQCLRGKTADISMESADIRDCTQTFEKDSKAGIFDLFQRRYAYSLSVGV 131 (322)
Q Consensus 54 ~i~~~~~~--~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 131 (322)
++..+... .+||.++ ++.+ +.+.+.+.++++|++..+......
T Consensus 197 ~~~~~~~~~~~~p~~~~-----~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~l~~ 241 (410)
T TIGR00885 197 LAVALLIMLTKMPALNH-----SDAK------------------------------QISFSASLSRLARIRHYREGVIAQ 241 (410)
T ss_pred HHHHHHHHHhcCCCCCc-----cccc------------------------------cccchhhHHHHHhChhHHHHHHHH
Confidence 66544432 2554221 0000 000111334555555544433333
Q ss_pred HHHhhhhccchhhhHhcHHHHHHHc--CCCchhHHHHHHH----HH--------------H--HHHHHHHHHHHHHHHHH
Q 042030 132 GLMVMQPFVGSAAIAYYASYIIAAA--DLSTDIGSISMAI----IQ--------------A--STIWMGLSLTIIALAFG 189 (322)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~----~~--------------~--~~~~~~~~~~~~~~~~~ 189 (322)
++.... ......+.+.+.++. +.+........+. .. . ......+...+......
T Consensus 242 f~yvg~----e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~ 317 (410)
T TIGR00885 242 FFYVGV----QIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSI 317 (410)
T ss_pred HHHHHH----HHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH
Confidence 333322 233445666666554 2222211111111 11 0 11111111111111111
Q ss_pred hccCCCCCCchhHHHHHHHHHHHHHHhhcccchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 042030 190 LQDTHLWNEATPVLVYVGIMGFSIAFALGMAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTME 263 (322)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~ 263 (322)
... . ......+.+.+.+ ...++|..+....+..+++.+..+.++.... +|+.+.|.+.+.+.|
T Consensus 318 ~~~------~--~~~~~~l~~~glf-~s~~fp~i~sl~~~~~g~~~~~~s~~l~~~~--~Gga~~p~l~G~~~d 380 (410)
T TIGR00885 318 FAG------G--HVGLYCLTLCSAF-MSLMFPTIYGIALKGLGQDTKYGAAGLVMAI--IGGGIVPPLQGFIID 380 (410)
T ss_pred HcC------C--hHHHHHHHHHHHH-HHHHHHHHHHHHHhhhhhhhhhhHHHHHHHH--hccchHHHHHHHHHH
Confidence 111 1 1222333333333 3344577789999999887765566655544 999999999999998
No 91
>PRK10133 L-fucose transporter; Provisional
Probab=99.11 E-value=2.3e-08 Score=86.82 Aligned_cols=52 Identities=12% Similarity=-0.022 Sum_probs=36.1
Q ss_pred ccchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH-hh-hcchhHH
Q 042030 219 MAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTME-WS-RTGTFSI 272 (322)
Q Consensus 219 ~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~-~~~~~~~ 272 (322)
..|..+....|.+|.+ .+++.++.. ...+|+.++|.+.+.+.+ .+ ....+++
T Consensus 364 i~P~~~s~a~~~~~~~-~~~as~l~~-~~~~g~~~~~~i~G~l~~~~g~~~~~~~v 417 (438)
T PRK10133 364 QYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELI 417 (438)
T ss_pred HHHHHHHHHHcccchh-hccchhHHh-HHhccchHHHHHHHHHHHhccchHHHHHH
Confidence 4566688888888764 467777765 455788899999998877 44 3444443
No 92
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=99.10 E-value=3.3e-10 Score=95.81 Aligned_cols=245 Identities=13% Similarity=0.093 Sum_probs=131.4
Q ss_pred ceeeeeecCCCCchhhHHHHHHHHHHHHHHHHHhhhhh---hhHHHHHHh---hHHHHHHHHHhhccCCChHHHHhcCCH
Q 042030 3 PIYIAEITPKNIRGAFTATSQFLIVSGMSVMYLVGTIV---SWRALALIA---AVPCLLQVVGLFFIPESPRWLAKIGKE 76 (322)
Q Consensus 3 ~~~i~e~~~~~~rg~~~~~~~~~~~~G~~l~~~~~~~~---~Wr~~f~~~---~~~~~i~~~~~~~lpesp~~l~~~~~~ 76 (322)
..|+..|+|+++|+++.++...+..+|.+++++++..+ |||+.+.+. .....+.++..+++|-.+|-+.-+++.
T Consensus 136 ~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~s~gWr~y~~Ln~Isl~s~~~a~~~a~~LP~~~~sl~f~~~~ 215 (511)
T TIGR00806 136 SSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLVTLGWISYSTLNIISLVFMTFSVFLALFLKRPKRSLFFNRLE 215 (511)
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHhCCCCchhhhhcccc
Confidence 45788999999999999999999999999998888765 899866543 333334455668888665533333221
Q ss_pred HHHHHHHHHHhCCchhhhhhHHHHHHhhhhcccccccchhhh---cchhhHHHHHHHHHHHhhhhccchhhhHhcHHHHH
Q 042030 77 KELETTLQCLRGKTADISMESADIRDCTQTFEKDSKAGIFDL---FQRRYAYSLSVGVGLMVMQPFVGSAAIAYYASYII 153 (322)
Q Consensus 77 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (322)
+.......+......+.. .+..+..+......++.+ +++.+..+.++-..+++....++++-+.+|...+-
T Consensus 216 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~~~~~~y~n~~vl~WSlWwa~a~~g~~qv~~Y~Q~LW 289 (511)
T TIGR00806 216 DVRGALPCELDQMVPGPG------GKLEDYLGTCRDSFLVRMLSELVTIYRNPQLLLWSLWWVFNSAGYYLITYYVHTLW 289 (511)
T ss_pred ccccccccccccCCCCCc------cccchhhhhhhhHHHHHHHHHHHHHhcCcchhhhhHHHHHHhhHHHHHHHHHHHHH
Confidence 110000000000000000 000000000011111222 22233345555667778888888888889888887
Q ss_pred HHcCC-----Cch---hHHHHHHHHH------------HHHHHHHHHHHHHHHHHHhccCCCCCCchhHHHHHHHHHHHH
Q 042030 154 AAADL-----STD---IGSISMAIIQ------------ASTIWMGLSLTIIALAFGLQDTHLWNEATPVLVYVGIMGFSI 213 (322)
Q Consensus 154 ~~~g~-----~~~---~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (322)
+...- +.. ..+++.++.. .+...+.+..++-+......... .+.|...++..++..
T Consensus 290 ~~v~~~~~~yNG~veA~~tllga~~a~~ag~~~~~w~~~~~l~l~v~s~~~~gll~~m~~t----~~Iw~~Y~~yvlf~~ 365 (511)
T TIGR00806 290 GTLDESLNKYNGAVDAASTLLGAITSFIAGFVNIRWARWSKLLIAVVSAIQAGLVFWMSQS----HDIWVLYVTYVLFRG 365 (511)
T ss_pred HHcCCCccccCCHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHhhhhhcc----cchHHHHHHHHHHHH
Confidence 66522 111 1111111111 23344444444444333332221 456777777777777
Q ss_pred HHhhcccchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHH
Q 042030 214 AFALGMAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTF 258 (322)
Q Consensus 214 ~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~ 258 (322)
.+.+.. ++...-+++....+.-|...|+.++++-+-..+-..+.
T Consensus 366 ~y~fli-tia~~~iA~~L~~~~~aLvFGiNtfvAl~LQtilT~iV 409 (511)
T TIGR00806 366 IYQFLV-PIATFQIASSLSKELCALVFGINTFVATALKTIITAVV 409 (511)
T ss_pred HHHHHH-HHHHHHHHHHhcccceEEEEecHHHHHHHHHHheEEEE
Confidence 776643 33344455555555558888888887776665555443
No 93
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=99.08 E-value=2.8e-09 Score=93.16 Aligned_cols=53 Identities=15% Similarity=0.136 Sum_probs=43.7
Q ss_pred HHHHHHhhcccchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 042030 210 GFSIAFALGMAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTME 263 (322)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~ 263 (322)
+...+++....+. ..++.+..|++.+++..++.+.+.++|..+++.+.+.+.+
T Consensus 360 l~~~~~g~~~~~~-~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~ 412 (468)
T TIGR00788 360 IAEVLAQLKFMPF-LVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLME 412 (468)
T ss_pred HHHHHHHHHHccH-HHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555 7889999999999999999999999999999998888887
No 94
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=99.07 E-value=4e-09 Score=87.00 Aligned_cols=156 Identities=12% Similarity=0.060 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHhhhhccchhhhHhcHHHHHHHcCCCchhHHHHHHHHH------------------------HHHHHHHH
Q 042030 124 AYSLSVGVGLMVMQPFVGSAAIAYYASYIIAAADLSTDIGSISMAIIQ------------------------ASTIWMGL 179 (322)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~------------------------~~~~~~~~ 179 (322)
+++.++..++........-..+..-.|.+.++.+++..+.+++.+... .+.+..++
T Consensus 27 r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai 106 (448)
T COG2271 27 RIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAI 106 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHH
Confidence 344444444444332223345566679999998899887777666655 33444444
Q ss_pred HHHHHHHHHHhccCCCCCCchhHHHHHHHHHHHHHHhhcccchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHH-
Q 042030 180 SLTIIALAFGLQDTHLWNEATPVLVYVGIMGFSIAFALGMAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTF- 258 (322)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~- 258 (322)
+.++++.. .+.....++..+.+.+-+.|+.|. .-.++.-+|++.||+..++-++..++|+.+.|.+.
T Consensus 107 ~nil~Gfs-----------~s~~~~~~l~~lng~fQg~Gwpp~-~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~ 174 (448)
T COG2271 107 VNILFGFS-----------PSLFLFAVLWVLNGWFQGMGWPPC-ARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVAL 174 (448)
T ss_pred HHHHHhhh-----------hHHHHHHHHHHHHHHHhcCCCcHH-HHHHHHHcCccccCceEEEehhhhhcccchHHHHHH
Confidence 44444432 123333444444445555554444 67788999999999999999999999999999998
Q ss_pred -HHHHH-hhhcchhHHHHHHHHHHHHHHHhhccCC
Q 042030 259 -HFTME-WSRTGTFSIFWVICAAAVLFVAFLVPET 291 (322)
Q Consensus 259 -~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~et 291 (322)
+.... .++...|++-++++++.+++.++.+++|
T Consensus 175 la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~ 209 (448)
T COG2271 175 LAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDR 209 (448)
T ss_pred HHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 66666 5788889999999998888888877654
No 95
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=99.07 E-value=2.6e-09 Score=86.71 Aligned_cols=46 Identities=9% Similarity=0.050 Sum_probs=39.9
Q ss_pred cccchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 042030 218 GMAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTME 263 (322)
Q Consensus 218 ~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~ 263 (322)
...+....++....|.+.||+..|+....+.++-+++|.+.|.+..
T Consensus 368 ~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~ 413 (451)
T KOG2615|consen 368 SVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFS 413 (451)
T ss_pred HhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEE
Confidence 3445557888899999999999999999999999999999987766
No 96
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=99.04 E-value=5.6e-08 Score=79.94 Aligned_cols=230 Identities=17% Similarity=0.099 Sum_probs=133.6
Q ss_pred ceeeeeecCCCCchhhHHHHHHHHHHHHHHHHHhhhhh-----------------------hhHHHHHHhhHHHHHHHHH
Q 042030 3 PIYIAEITPKNIRGAFTATSQFLIVSGMSVMYLVGTIV-----------------------SWRALALIAAVPCLLQVVG 59 (322)
Q Consensus 3 ~~~i~e~~~~~~rg~~~~~~~~~~~~G~~l~~~~~~~~-----------------------~Wr~~f~~~~~~~~i~~~~ 59 (322)
..|++...++++-.+.+.+.+.++.+|.+++|+++..+ .||++|...+...+++.+.
T Consensus 126 Np~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~ 205 (422)
T COG0738 126 NPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQILAIKGADASSVQFPYLILAGLLVLLAVL 205 (422)
T ss_pred chHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 35677788888888899999999999999999887543 4888888777666655544
Q ss_pred h--hccCCChHHHHhcCCHHHHHHHHHHHhCCchhhhhhHHHHHHhhhhcccccccchhhhcchhhHHHHHHHHHHHhhh
Q 042030 60 L--FFIPESPRWLAKIGKEKELETTLQCLRGKTADISMESADIRDCTQTFEKDSKAGIFDLFQRRYAYSLSVGVGLMVMQ 137 (322)
Q Consensus 60 ~--~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 137 (322)
. ..+||.+. .+.++ .+.++....+++++++.+.-.+..++....
T Consensus 206 ~~~~k~p~~~~-----~~~~~-----------------------------~~~~~~~~~~l~~~~~~~~gvl~~FlYVG~ 251 (422)
T COG0738 206 ILLSKLPDLQV-----AAPSL-----------------------------GASGSAGLSSLFQNKHLRLGVLAIFLYVGA 251 (422)
T ss_pred HHhccCCcCCc-----ccccc-----------------------------cccccchHHHHHhChHHHHHHHHHHHHHhH
Confidence 3 34565432 01110 011112567788888777666665555543
Q ss_pred hccchhhhHhcHHHHHHH-cCCCchhHHHHHHHHH----HH----------------HHHHHHHHHHHHHHHHhccCCCC
Q 042030 138 PFVGSAAIAYYASYIIAA-ADLSTDIGSISMAIIQ----AS----------------TIWMGLSLTIIALAFGLQDTHLW 196 (322)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~----~~----------------~~~~~~~~~~~~~~~~~~~~~~~ 196 (322)
-.....|++.++.+ .|++...+....+..- ++ ....+++.+++........
T Consensus 252 ----Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~~---- 323 (422)
T COG0738 252 ----EVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVALIG---- 323 (422)
T ss_pred ----HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhc----
Confidence 34556777877777 5776654443333222 11 1111111122222111111
Q ss_pred CCchhHHHHHHHHHHHHHHhhcccchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH-hhhcchhHHHHH
Q 042030 197 NEATPVLVYVGIMGFSIAFALGMAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTME-WSRTGTFSIFWV 275 (322)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~ 275 (322)
....+....+ .+.+...++|..++...+..|.+. ...|......-.|+++.|.+.+++.| .+....+.....
T Consensus 324 ----g~v~~~~l~~-ig~F~simfPTIfslal~~l~~~t--s~~s~~l~maivGGAiiP~l~G~i~d~~g~~~~~~~~pl 396 (422)
T COG0738 324 ----GVVALYALFL-IGLFNSIMFPTIFSLALKNLGEHT--SVGSGLLVMAIVGGAIIPPLQGVIADMFGIQLTFLIVPL 396 (422)
T ss_pred ----ChHHHHHHHH-HHHHhHHHHHHHHHHHHhccCccc--cccceeeeeheecchHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 1222222222 344455578888999999998333 33344445567899999999999999 554444443444
Q ss_pred HHHHHH
Q 042030 276 ICAAAV 281 (322)
Q Consensus 276 ~~~~~~ 281 (322)
.|.+-.
T Consensus 397 lc~lyV 402 (422)
T COG0738 397 LCYLYV 402 (422)
T ss_pred HHHHHH
Confidence 444443
No 97
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=99.02 E-value=2.3e-07 Score=79.08 Aligned_cols=80 Identities=16% Similarity=0.252 Sum_probs=54.3
Q ss_pred HHHHHhhcccchhhhhhccccCccccchhHHHHHHH-HHHHHHHHHHHHHHHHH-hhhcc------hhHHHHHHHHHHHH
Q 042030 211 FSIAFALGMAGLPSVIMAEIFPINIKGSAGSLVILL-HNCSNWIVTYTFHFTME-WSRTG------TFSIFWVICAAAVL 282 (322)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~-~~~g~~~~~~~~~~~~~-~~~~~------~~~~~~~~~~~~~~ 282 (322)
.+..++.. ......|+.+..|++.|+++.++.+.. ..+|..++..+.|++.+ .+... .+.+.+++.++..+
T Consensus 311 hG~tf~~~-~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~ 389 (400)
T PF03825_consen 311 HGLTFGLF-HAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILV 389 (400)
T ss_pred hhHHHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHH
Confidence 44444443 333478999999999999999997765 56999999999999998 44332 23444444444444
Q ss_pred HHHhhccCC
Q 042030 283 FVAFLVPET 291 (322)
Q Consensus 283 ~~~~~~~et 291 (322)
+.+++.||+
T Consensus 390 ~f~~~fk~~ 398 (400)
T PF03825_consen 390 LFVILFKPK 398 (400)
T ss_pred HHHhhccCC
Confidence 445555554
No 98
>PRK10429 melibiose:sodium symporter; Provisional
Probab=99.02 E-value=3.4e-08 Score=86.79 Aligned_cols=44 Identities=11% Similarity=0.151 Sum_probs=33.3
Q ss_pred cchhhhhhccccC-----ccc--cchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 042030 220 AGLPSVIMAEIFP-----INI--KGSAGSLVILLHNCSNWIVTYTFHFTME 263 (322)
Q Consensus 220 ~~~~~~~~~e~~p-----~~~--r~~~~~~~~~~~~~g~~~~~~~~~~~~~ 263 (322)
.+..+++.+|..+ +.. .|...|.......++..+++.+.+.+.+
T Consensus 342 ~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~ 392 (473)
T PRK10429 342 WVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLG 392 (473)
T ss_pred HHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555778888854 334 3556677888889999999999998876
No 99
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=99.02 E-value=9.7e-08 Score=84.14 Aligned_cols=55 Identities=20% Similarity=0.261 Sum_probs=39.1
Q ss_pred eeeeecCCCCchhhHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHhhHHHHHHHHH
Q 042030 5 YIAEITPKNIRGAFTATSQFLIVSGMSVMYLVGTIV----SWRALALIAAVPCLLQVVG 59 (322)
Q Consensus 5 ~i~e~~~~~~rg~~~~~~~~~~~~G~~l~~~~~~~~----~Wr~~f~~~~~~~~i~~~~ 59 (322)
.++|..|.|.|+....+...........++.++..+ +|||.|++.++...+.++.
T Consensus 154 ~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~vl 212 (599)
T PF06609_consen 154 AISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALVL 212 (599)
T ss_pred HHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHHH
Confidence 478999999998877777655554444455555433 8999999988876665443
No 100
>PRK11462 putative transporter; Provisional
Probab=99.00 E-value=1.8e-07 Score=81.79 Aligned_cols=63 Identities=13% Similarity=0.068 Sum_probs=43.4
Q ss_pred eeeeeecC-CCCchhhHHHHHHHHHHHHHHHHHhhhh-----------hhhHHHHHHhhHHHHHHHHH-hhccCCC
Q 042030 4 IYIAEITP-KNIRGAFTATSQFLIVSGMSVMYLVGTI-----------VSWRALALIAAVPCLLQVVG-LFFIPES 66 (322)
Q Consensus 4 ~~i~e~~~-~~~rg~~~~~~~~~~~~G~~l~~~~~~~-----------~~Wr~~f~~~~~~~~i~~~~-~~~lpes 66 (322)
++.+|+++ +++|.+..++-..+..+|..+++.+... .+|+....+.++++++.... ....+|.
T Consensus 132 al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~i~~~~~kE~ 207 (460)
T PRK11462 132 ALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLAFCFFTTKER 207 (460)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHhcceec
Confidence 35567776 7899999999999988887776555322 15888777777776665443 4445663
No 101
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=98.99 E-value=2.5e-08 Score=90.13 Aligned_cols=152 Identities=18% Similarity=0.187 Sum_probs=86.3
Q ss_pred cceeeeeecCCCCchhhHHHHHHHHHHHHHHHHHhhhhh--------------------------hhHHHHHHhhHHHHH
Q 042030 2 IPIYIAEITPKNIRGAFTATSQFLIVSGMSVMYLVGTIV--------------------------SWRALALIAAVPCLL 55 (322)
Q Consensus 2 ~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~l~~~~~~~~--------------------------~Wr~~f~~~~~~~~i 55 (322)
+.+|+.|++|+++|+++.++++.+..+|..+|++++..+ +||..|++.++++++
T Consensus 193 ~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l 272 (633)
T TIGR00805 193 GISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALL 272 (633)
T ss_pred CchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHH
Confidence 568999999999999999999999999999998877432 277788888888777
Q ss_pred HHHHhhccCCC-hHHHHhcCCHHHHHHHHHHHhCCchhhhhhHHHHHHhhhhcccccccchhhhcchhhHHHHHHHHHHH
Q 042030 56 QVVGLFFIPES-PRWLAKIGKEKELETTLQCLRGKTADISMESADIRDCTQTFEKDSKAGIFDLFQRRYAYSLSVGVGLM 134 (322)
Q Consensus 56 ~~~~~~~lpes-p~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 134 (322)
..+.++++|+. |+.. .+.+.++.++. .. ....+.. . .+. ....++....++.+++++..+...+...+
T Consensus 273 ~~v~l~~~p~~lp~~~-~~~~~~~~~~~--~~-~~~~~~~-~-~~~----~~~~~~~~~~~~~Ll~n~~f~~~~l~~~~- 341 (633)
T TIGR00805 273 TSIPFFFFPKALPKEG-KRVNVDVHETE--KL-EKSEDKS-R-KKN----SDITKDFPKIIKRLLCNPIYMLVILAQVI- 341 (633)
T ss_pred HHHHHHhCccccCCcc-cccchhhhhhh--cc-ccccccc-c-hhh----hhhHHHHHHHHHHHHcCcHHHHHHHHHHH-
Confidence 66555666654 3210 00010100000 00 0000000 0 000 00000112245567776655444443322
Q ss_pred hhhhccchhhhHhcHHHHHHH-cCCCchhHHHHH
Q 042030 135 VMQPFVGSAAIAYYASYIIAA-ADLSTDIGSISM 167 (322)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~ 167 (322)
.....+.+..|+|.++++ .|++...++.+.
T Consensus 342 ---~~~~~~~~~~~lP~yl~~~~g~s~~~ag~l~ 372 (633)
T TIGR00805 342 ---DSLAFNGYITFLPKYLENQYGISSAEANFLI 372 (633)
T ss_pred ---HHHHHHHHHHHHHHHHHHHcCCcHHHHHHHh
Confidence 223467778899988876 488877554443
No 102
>PRK09669 putative symporter YagG; Provisional
Probab=98.97 E-value=1.1e-07 Score=82.97 Aligned_cols=45 Identities=9% Similarity=0.032 Sum_probs=35.1
Q ss_pred ccchhhhhhccccC-------ccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 042030 219 MAGLPSVIMAEIFP-------INIKGSAGSLVILLHNCSNWIVTYTFHFTME 263 (322)
Q Consensus 219 ~~~~~~~~~~e~~p-------~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~ 263 (322)
..+..+.+.+|..+ .+..+...|..+....+|..+++.+.+.+.+
T Consensus 336 ~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~ 387 (444)
T PRK09669 336 TTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILA 387 (444)
T ss_pred HHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44666888888875 2334566788888899999999999998877
No 103
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=98.95 E-value=1.5e-07 Score=80.11 Aligned_cols=64 Identities=17% Similarity=0.149 Sum_probs=46.2
Q ss_pred eeeeeecC-CCCchhhHHHHHHHHHHHHHHHHHhhhhh-----------hhHHHHHHhhHHHHHHHHHh-hccCCCh
Q 042030 4 IYIAEITP-KNIRGAFTATSQFLIVSGMSVMYLVGTIV-----------SWRALALIAAVPCLLQVVGL-FFIPESP 67 (322)
Q Consensus 4 ~~i~e~~~-~~~rg~~~~~~~~~~~~G~~l~~~~~~~~-----------~Wr~~f~~~~~~~~i~~~~~-~~lpesp 67 (322)
++.+|+++ ++||.+..+.-+.+..+|.++...+...+ ||+..-.+.++.+++..+.. +-.+|.+
T Consensus 135 al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~ 211 (467)
T COG2211 135 ALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLLFCFFNVKERV 211 (467)
T ss_pred hcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 45567774 68999999999999999977655444222 78888888888877776554 4466644
No 104
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=98.95 E-value=5.4e-08 Score=85.36 Aligned_cols=88 Identities=17% Similarity=0.205 Sum_probs=60.6
Q ss_pred hHHHHHHHHHHHHHHhhcccchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH-hhhcchhHHHHHHHHH
Q 042030 201 PVLVYVGIMGFSIAFALGMAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTME-WSRTGTFSIFWVICAA 279 (322)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 279 (322)
.+..+....+...+ .....|....+..+..|++.|++.+|+......+|..+++.+.....+ .++...+...+.++++
T Consensus 381 ~~~~i~~~~~~~~g-e~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (475)
T TIGR00924 381 PWFMVLIYLFQTLG-ELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLL 459 (475)
T ss_pred HHHHHHHHHHHHHH-HHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHH
Confidence 34344444443333 334567778999999999999999999999999999999888876655 3455556666666666
Q ss_pred HHHHHHhhcc
Q 042030 280 AVLFVAFLVP 289 (322)
Q Consensus 280 ~~~~~~~~~~ 289 (322)
.+++.++..|
T Consensus 460 ~~~~~~~~~~ 469 (475)
T TIGR00924 460 VGVVMALMVP 469 (475)
T ss_pred HHHHHHHHHH
Confidence 6555544443
No 105
>TIGR00895 2A0115 benzoate transport.
Probab=98.92 E-value=5.9e-08 Score=83.23 Aligned_cols=74 Identities=12% Similarity=0.144 Sum_probs=60.4
Q ss_pred ccchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH-hhhcchhHHHHHHHHHHHHHHHhhccCCC
Q 042030 219 MAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTME-WSRTGTFSIFWVICAAAVLFVAFLVPETK 292 (322)
Q Consensus 219 ~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~et~ 292 (322)
..+....++.|.+|++.|+++.++......+|..+++.+.+.+.+ .++...+.+.+.+..+..++.+.+.||+.
T Consensus 122 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (398)
T TIGR00895 122 LMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPESI 196 (398)
T ss_pred chhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHHHHHHhCCCCC
Confidence 455668899999999999999999999999999999999988877 67777777776666666666666777764
No 106
>PTZ00207 hypothetical protein; Provisional
Probab=98.92 E-value=1.6e-07 Score=83.16 Aligned_cols=77 Identities=16% Similarity=0.099 Sum_probs=52.1
Q ss_pred eeeeecCCCCchhhHHHHHHHHHHHHHH-HHHhhhhh--hhHHHHHHhhHHHHHHHH-Hhhc--cCCChHHHHhcCCHHH
Q 042030 5 YIAEITPKNIRGAFTATSQFLIVSGMSV-MYLVGTIV--SWRALALIAAVPCLLQVV-GLFF--IPESPRWLAKIGKEKE 78 (322)
Q Consensus 5 ~i~e~~~~~~rg~~~~~~~~~~~~G~~l-~~~~~~~~--~Wr~~f~~~~~~~~i~~~-~~~~--lpesp~~l~~~~~~~~ 78 (322)
.+.+++| ++||++.++...+..+|.++ +++....+ +|++.|++.++.+++..+ ...+ .|++|+|..++++.++
T Consensus 144 ~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~~~~~~fl~l~vl~~vv~ll~~~~vr~p~~~~~~~~~~~~~~ 222 (591)
T PTZ00207 144 TVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFSDNTSAYFFFLMSFALVVGILAIVFMRLPPFHLTGYQEKHLDE 222 (591)
T ss_pred HHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhheeCCcchhhcccccCCCH
Confidence 4567886 78999999999999999975 44444444 899988887776665533 3333 5666776555544444
Q ss_pred HHHH
Q 042030 79 LETT 82 (322)
Q Consensus 79 a~~~ 82 (322)
.++.
T Consensus 223 ~~~~ 226 (591)
T PTZ00207 223 EEKA 226 (591)
T ss_pred HHHH
Confidence 4443
No 107
>PF13347 MFS_2: MFS/sugar transport protein
Probab=98.90 E-value=4.5e-07 Score=78.74 Aligned_cols=216 Identities=19% Similarity=0.202 Sum_probs=119.2
Q ss_pred eeeeeecC-CCCchhhHHHHHHHHHHHHHHHHHhhhhh-----------hhHHHHHHhhHHHHHHHHH-hhccCCChHHH
Q 042030 4 IYIAEITP-KNIRGAFTATSQFLIVSGMSVMYLVGTIV-----------SWRALALIAAVPCLLQVVG-LFFIPESPRWL 70 (322)
Q Consensus 4 ~~i~e~~~-~~~rg~~~~~~~~~~~~G~~l~~~~~~~~-----------~Wr~~f~~~~~~~~i~~~~-~~~lpesp~~l 70 (322)
++..|.++ +++|.+..+.-+.+..+|.++...+...+ +|++..++.+++.++..+. .+..+|.++
T Consensus 126 al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke~~~-- 203 (428)
T PF13347_consen 126 ALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKERSV-- 203 (428)
T ss_pred hcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhhhhheeeeccc--
Confidence 57788997 57899999999988888886554444321 5999999888887777554 566788211
Q ss_pred HhcCCHHHHHHHHHHHhCCchhhhhhHHHHHHhhhhcccccccchhhhcchhhHHHHHHHHHHHhhhhccchhhhHhcHH
Q 042030 71 AKIGKEKELETTLQCLRGKTADISMESADIRDCTQTFEKDSKAGIFDLFQRRYAYSLSVGVGLMVMQPFVGSAAIAYYAS 150 (322)
Q Consensus 71 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (322)
+.++ ++++.+-+..++++++++.++.......+..+.. .......+
T Consensus 204 ----~~~~--------------------------~~~~~~~~~~~~~~~~nr~~~~l~~~~~~~~~~~----~~~~~~~~ 249 (428)
T PF13347_consen 204 ----EVTE--------------------------QEKKISLRDSLRSLFRNRPFRILLLAFFLQWLAF----ALMNTFLP 249 (428)
T ss_pred ----cccc--------------------------cccccccccchhhhcccchHHHHHHHHHHHHhhh----hhhhhHHH
Confidence 0000 0011223345677777777666666555444332 23333444
Q ss_pred HHHHHc-CCCchhHHHHHH------HHH---------------HHHHHHHHHHHHHHHHHHhccCCCCCCchhHHHHHHH
Q 042030 151 YIIAAA-DLSTDIGSISMA------IIQ---------------ASTIWMGLSLTIIALAFGLQDTHLWNEATPVLVYVGI 208 (322)
Q Consensus 151 ~~~~~~-g~~~~~~~~~~~------~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (322)
++.+.. |.+.. .+.... +.. .......+............. .+.+..++..
T Consensus 250 y~~~~vl~~~~~-~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~i~~ 322 (428)
T PF13347_consen 250 YYFTYVLGNEGL-ISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGP------GSPWLVLILF 322 (428)
T ss_pred HHHHHHhcCchh-hHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHh------hhHHHHHHHH
Confidence 444443 33321 111111 111 111111111111111111111 1234444444
Q ss_pred HHHHHHHhhcccchhhhhhccccCc-------cccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 042030 209 MGFSIAFALGMAGLPSVIMAEIFPI-------NIKGSAGSLVILLHNCSNWIVTYTFHFTME 263 (322)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~e~~p~-------~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~ 263 (322)
.+.+.+.+. .....+++.+|+.+. +..|...|+.+....++..+++.+.+.+.+
T Consensus 323 ~l~gi~~~~-~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~ 383 (428)
T PF13347_consen 323 ILAGIGYGA-FFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLA 383 (428)
T ss_pred HHhHhhhcc-cccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 443444333 446668888888863 334777888888999999999999887776
No 108
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=98.90 E-value=5.9e-07 Score=75.72 Aligned_cols=92 Identities=13% Similarity=0.116 Sum_probs=67.4
Q ss_pred hHHHHHHHHHHHHHHhhcccchhhhhhccccCccccchhHHHH-HHHHHHHHHHHHHHHHHHHH-hhhcchhHHHHHHHH
Q 042030 201 PVLVYVGIMGFSIAFALGMAGLPSVIMAEIFPINIKGSAGSLV-ILLHNCSNWIVTYTFHFTME-WSRTGTFSIFWVICA 278 (322)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~-~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 278 (322)
++.....-.+.+.-+.....++ .-|+++.+|++..++...+. +....+|.++.+.+.|.+.| .|....+++++++.+
T Consensus 312 ~~~i~~~klLH~~e~~l~lva~-fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~ 390 (412)
T PF01306_consen 312 PWVISLIKLLHALEFPLLLVAA-FKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVL 390 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHH
Confidence 4555555555555554443333 77999999999988888885 56677899999999999999 777788999999888
Q ss_pred HHHHHHHhhccCCCC
Q 042030 279 AAVLFVAFLVPETKG 293 (322)
Q Consensus 279 ~~~~~~~~~~~et~~ 293 (322)
+..++..+.+++.++
T Consensus 391 ~~~li~~f~l~~~~~ 405 (412)
T PF01306_consen 391 PFTLISAFTLKKDKK 405 (412)
T ss_dssp HHHHHHHHHS--SSS
T ss_pred HHHHHheeeecCCCc
Confidence 888877777765544
No 109
>PRK11663 regulatory protein UhpC; Provisional
Probab=98.86 E-value=1.4e-07 Score=81.99 Aligned_cols=72 Identities=10% Similarity=0.091 Sum_probs=58.4
Q ss_pred cchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH-hhhcchhHHHHHHHHHHHHHHHhhccCC
Q 042030 220 AGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTME-WSRTGTFSIFWVICAAAVLFVAFLVPET 291 (322)
Q Consensus 220 ~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~et 291 (322)
.+....+++|.+|++.|+++.++.+....+|+.++|.+.+.+.+ .++...+.+.+++.++.+++..+++||+
T Consensus 129 ~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~~~~~~~~~~~~ 201 (434)
T PRK11663 129 WPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVVGLFLCWRLRDK 201 (434)
T ss_pred chHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 35557889999999999999999999999999999999998887 7777788877776666555555556664
No 110
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=98.82 E-value=4.6e-07 Score=78.23 Aligned_cols=164 Identities=11% Similarity=0.088 Sum_probs=98.5
Q ss_pred HHHHHHHHHHhhhhccchhhhHhcHHHHHHHcCCCchhHHHHHHHHH----------------HH-HHHHHHHHHHHHHH
Q 042030 125 YSLSVGVGLMVMQPFVGSAAIAYYASYIIAAADLSTDIGSISMAIIQ----------------AS-TIWMGLSLTIIALA 187 (322)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~----------------~~-~~~~~~~~~~~~~~ 187 (322)
++......+.++.+......+.+..|.+.++.|.+....+.+.+... .+ ...+..+.++.++.
T Consensus 7 ~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~ 86 (412)
T TIGR02332 7 RRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIA 86 (412)
T ss_pred hHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHH
Confidence 44444445555544444556666778777888888776555555433 11 11112222222211
Q ss_pred HHhccCCCCCCchhHHHHHHHHHHHHHHhhcccchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH----
Q 042030 188 FGLQDTHLWNEATPVLVYVGIMGFSIAFALGMAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTME---- 263 (322)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~---- 263 (322)
....... .+.+..++.-++.+.+. .+..+....++.|.+|++.|+.+.++.+....+|..+++.+.+.+.+
T Consensus 87 ~~~~~~~----~~~~~l~~~r~l~G~~~-~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 161 (412)
T TIGR02332 87 STATMFA----TGPESLYLLRILVGIAE-AGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGL 161 (412)
T ss_pred HHHHHHh----cCHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 1111110 11222333333323332 23345656788999999999999999999999999999999887764
Q ss_pred ---hhhcchhHHHHHHHHHHHHHHHhhccCCCC
Q 042030 264 ---WSRTGTFSIFWVICAAAVLFVAFLVPETKG 293 (322)
Q Consensus 264 ---~~~~~~~~~~~~~~~~~~~~~~~~~~et~~ 293 (322)
.++...|.+.++..++..++.++++||+.+
T Consensus 162 ~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~ 194 (412)
T TIGR02332 162 MALKGWQWLFLLEGFPSVILGVMTWFWLDDSPD 194 (412)
T ss_pred CCccchhHHHHHHHHHHHHHHHHHhhccCCCcc
Confidence 367788888777777776667777888754
No 111
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=98.81 E-value=6e-07 Score=78.98 Aligned_cols=69 Identities=16% Similarity=0.230 Sum_probs=48.2
Q ss_pred ccchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH-----------hhhcchhHHHHHHHHHHHHHHHhh
Q 042030 219 MAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTME-----------WSRTGTFSIFWVICAAAVLFVAFL 287 (322)
Q Consensus 219 ~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~ 287 (322)
..+....++.+..|++.++.++|+.+....+|+.++..+...... ..+...|...+...++++++.+..
T Consensus 396 ~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v~~~~~ 475 (489)
T PRK10207 396 ISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVAVVMALM 475 (489)
T ss_pred HhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 455557888889999999999999999889999888877653311 123345666666666665555443
No 112
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=98.81 E-value=2.7e-07 Score=81.51 Aligned_cols=53 Identities=13% Similarity=0.099 Sum_probs=40.2
Q ss_pred eeeeeecCCCC--chhhHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHhhHHHHHH
Q 042030 4 IYIAEITPKNI--RGAFTATSQFLIVSGMSVMYLVGTIV----SWRALALIAAVPCLLQ 56 (322)
Q Consensus 4 ~~i~e~~~~~~--rg~~~~~~~~~~~~G~~l~~~~~~~~----~Wr~~f~~~~~~~~i~ 56 (322)
++++|++|+++ |+...+++..+.++|..+++.+++.+ |||+.|++.++..++.
T Consensus 135 ~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~ 193 (500)
T PRK09584 135 SLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLIT 193 (500)
T ss_pred HHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHH
Confidence 56788887653 45577888888899998888887665 8999999987644443
No 113
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=98.76 E-value=9e-07 Score=75.65 Aligned_cols=75 Identities=12% Similarity=0.169 Sum_probs=61.1
Q ss_pred cchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH-hhhcchhHHHHHHHHHHHHHHHhhccCCCCC
Q 042030 220 AGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTME-WSRTGTFSIFWVICAAAVLFVAFLVPETKGR 294 (322)
Q Consensus 220 ~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~et~~~ 294 (322)
.+....++.|.+|++.|+++.+..+....+|..++|.+.+.+.+ .++...+.+.+++.++..+..+...||++++
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (385)
T TIGR00710 111 SVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFFILPETLPY 186 (385)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 45557889999999999999999999999999999999998877 6777777777777777766666667776543
No 114
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=98.75 E-value=5.7e-09 Score=92.08 Aligned_cols=85 Identities=12% Similarity=0.055 Sum_probs=64.1
Q ss_pred ceeeeeecCCCCchhhHHH-HHHHHHHHHHHHHHhhhhh-----hhHHHHHHhhHHHHHHHHHhhccCCChHHHHhc---
Q 042030 3 PIYIAEITPKNIRGAFTAT-SQFLIVSGMSVMYLVGTIV-----SWRALALIAAVPCLLQVVGLFFIPESPRWLAKI--- 73 (322)
Q Consensus 3 ~~~i~e~~~~~~rg~~~~~-~~~~~~~G~~l~~~~~~~~-----~Wr~~f~~~~~~~~i~~~~~~~lpesp~~l~~~--- 73 (322)
+.++.|.+|++.||...++ ++.+...| .+++.+...+ +|+.++++..+++++.++..+++||||+|+.++
T Consensus 364 ~~~~~~~~p~~~Rg~~~g~~~~~~~~~g-~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~pes~~~~~~~~~~ 442 (490)
T PRK10642 364 ASTLPAMFPTHIRYSALAAAFNISVLVA-GLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGVTMKETANRPLKGATP 442 (490)
T ss_pred HHHHHHHCCCccchHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccccCCCCCCccc
Confidence 3456789999999998886 56655554 4444444332 588888877778777777777889999998765
Q ss_pred --CCHHHHHHHHHHHhC
Q 042030 74 --GKEKELETTLQCLRG 88 (322)
Q Consensus 74 --~~~~~a~~~~~~~~~ 88 (322)
+|.|||++.+++++.
T Consensus 443 ~~~~~~~a~~~l~~~~~ 459 (490)
T PRK10642 443 AASDIQEAKEILVEHYD 459 (490)
T ss_pred cccchhhHHHHhhcccc
Confidence 999999999998873
No 115
>PRK10054 putative transporter; Provisional
Probab=98.75 E-value=7.2e-07 Score=76.57 Aligned_cols=74 Identities=14% Similarity=0.023 Sum_probs=59.3
Q ss_pred ccchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhccCCC
Q 042030 219 MAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTMEWSRTGTFSIFWVICAAAVLFVAFLVPETK 292 (322)
Q Consensus 219 ~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~et~ 292 (322)
..+....+.+|.+|++.|+++.|+.+...++|..++|.+.+.+.+.++...|...+++.++..+...+.+||++
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~~g~~~~f~~~~~~~~i~~i~~~~~~~~~~ 186 (395)
T PRK10054 113 FSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVMQSINLPFWLAAICSAFPLVFIQIWVQRSE 186 (395)
T ss_pred HHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhccc
Confidence 35556788899999999999999999999999999999999887777777888777776666555555566553
No 116
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.73 E-value=2.1e-06 Score=76.74 Aligned_cols=151 Identities=19% Similarity=0.246 Sum_probs=95.0
Q ss_pred CcceeeeeecCCCCchhhHHHHHHHHHHHHHHHHHhhhhh-----------------------hhHHHHHHhhHHHHHHH
Q 042030 1 MIPIYIAEITPKNIRGAFTATSQFLIVSGMSVMYLVGTIV-----------------------SWRALALIAAVPCLLQV 57 (322)
Q Consensus 1 ~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~l~~~~~~~~-----------------------~Wr~~f~~~~~~~~i~~ 57 (322)
+..+|+-|...+++-....++......+|.++|.+++... -|..-|++.+...++..
T Consensus 257 lGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a 336 (735)
T KOG3626|consen 257 LGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSA 336 (735)
T ss_pred CCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHH
Confidence 3568999999999999999999999999999999988654 27777888888888777
Q ss_pred HHhhccCCChHHHHhcCCHHHHHHHHHHHhCCchhhhhhHHHHHHhhhhccccc-------ccchhhhcchhhHHHHHHH
Q 042030 58 VGLFFIPESPRWLAKIGKEKELETTLQCLRGKTADISMESADIRDCTQTFEKDS-------KAGIFDLFQRRYAYSLSVG 130 (322)
Q Consensus 58 ~~~~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~ 130 (322)
+.++++|.... +.+++.+++ ..+..+.++. ...+.+.. ....+.++++ ++++.
T Consensus 337 ~p~f~fPk~lp---~~~~~~~~~-~~~~~k~~~~------------~~~~~~~~~~~ikdfp~s~~~ll~N----~if~~ 396 (735)
T KOG3626|consen 337 VPLFFFPKELP---KSQKRKRAR-DLHVLKTESG------------GAKSDKTFGKKIKDFPKSIKRLLSN----PIFML 396 (735)
T ss_pred HHHHhCcccCc---cccccchhh-hhcccccccc------------cccCCcchhhhHHHHHHHHHHHhcC----chHHH
Confidence 77777776532 111111000 0000000000 00000111 1123334443 45555
Q ss_pred HHHHhhhhccchhhhHhcHHHHHHHc-CCCchhHHHHHHHHH
Q 042030 131 VGLMVMQPFVGSAAIAYYASYIIAAA-DLSTDIGSISMAIIQ 171 (322)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~ 171 (322)
..+........+.+...|+|-++++- |.+...+..+++.+.
T Consensus 397 ~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~ 438 (735)
T KOG3626|consen 397 VVLASVIESLAITGYITFLPKYLETQFGISASLANILTGSIG 438 (735)
T ss_pred HHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhh
Confidence 55556666667888899999999865 998888877776655
No 117
>PRK09848 glucuronide transporter; Provisional
Probab=98.72 E-value=2.2e-06 Score=74.93 Aligned_cols=44 Identities=18% Similarity=0.167 Sum_probs=34.5
Q ss_pred cchhhhhhccccCcc-------ccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 042030 220 AGLPSVIMAEIFPIN-------IKGSAGSLVILLHNCSNWIVTYTFHFTME 263 (322)
Q Consensus 220 ~~~~~~~~~e~~p~~-------~r~~~~~~~~~~~~~g~~~~~~~~~~~~~ 263 (322)
.+..+++.+|..|.+ .+|...|+.+....+|..+++.+.+.+.+
T Consensus 337 ~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~ 387 (448)
T PRK09848 337 MTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILG 387 (448)
T ss_pred HHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344577777777643 45888899999999999999999888766
No 118
>TIGR00893 2A0114 d-galactonate transporter.
Probab=98.72 E-value=3.7e-07 Score=78.15 Aligned_cols=75 Identities=16% Similarity=0.075 Sum_probs=61.0
Q ss_pred ccchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH-hhhcchhHHHHHHHHHHHHHHHhhccCCCC
Q 042030 219 MAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTME-WSRTGTFSIFWVICAAAVLFVAFLVPETKG 293 (322)
Q Consensus 219 ~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~et~~ 293 (322)
..+....++.|.+|++.|+++.++......+|..+++.+.+.+.+ .++...+...+++.++..+..+...||+++
T Consensus 99 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (399)
T TIGR00893 99 FFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVLWLKFIPDPPQ 174 (399)
T ss_pred hhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhheecCCCC
Confidence 456668899999999999999999999999999999999988776 677777877777777766666666666543
No 119
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=98.71 E-value=1.7e-07 Score=78.10 Aligned_cols=84 Identities=15% Similarity=0.116 Sum_probs=58.2
Q ss_pred HHHHhhcccchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH-hh----hcchhHHHHHHHHHHHHHHHh
Q 042030 212 SIAFALGMAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTME-WS----RTGTFSIFWVICAAAVLFVAF 286 (322)
Q Consensus 212 ~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~ 286 (322)
.+.+..+..|+-.-+..|..=|..-++..|+.+..+++.+++-.++.+...+ .+ .....+.+...+.+.+++..+
T Consensus 369 ~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~ 448 (480)
T KOG2563|consen 369 LGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAILVAF 448 (480)
T ss_pred HHHhhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHHHhh
Confidence 4555667777777778887656677899999999999999999998887777 44 333345555555566665555
Q ss_pred hccCCCCCC
Q 042030 287 LVPETKGRH 295 (322)
Q Consensus 287 ~~~et~~~~ 295 (322)
+.|+-++++
T Consensus 449 ~r~~y~R~~ 457 (480)
T KOG2563|consen 449 FRPDYRRLR 457 (480)
T ss_pred hhhhHHhHh
Confidence 555444443
No 120
>PRK03545 putative arabinose transporter; Provisional
Probab=98.69 E-value=2.5e-06 Score=73.21 Aligned_cols=74 Identities=14% Similarity=-0.000 Sum_probs=60.5
Q ss_pred ccchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH-hhhcchhHHHHHHHHHHHHHHHhhccCCC
Q 042030 219 MAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTME-WSRTGTFSIFWVICAAAVLFVAFLVPETK 292 (322)
Q Consensus 219 ~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~et~ 292 (322)
..+....++.|.+|++.|+.+.|+......+|..++|.+.+.+.+ .++...|.+.++++++..+..+...||.+
T Consensus 114 ~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~ 188 (390)
T PRK03545 114 FWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLIKLLPLLP 188 (390)
T ss_pred HHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 345557788999999999999999999999999999999988877 68888888888887777666566566643
No 121
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=98.68 E-value=3e-06 Score=70.87 Aligned_cols=142 Identities=15% Similarity=0.085 Sum_probs=98.1
Q ss_pred chhhhHhcHHHHHHHcCCCchhHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHhccCCCCCCchh
Q 042030 141 GSAAIAYYASYIIAAADLSTDIGSISMAIIQ-------------------ASTIWMGLSLTIIALAFGLQDTHLWNEATP 201 (322)
Q Consensus 141 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (322)
.-+...-.+|.+-++.+.+...++...+... ..........+..+-...... .+.
T Consensus 28 tEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~alA------p~f 101 (394)
T COG2814 28 TEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALA------PSF 101 (394)
T ss_pred HHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHh------ccH
Confidence 3556677789999999999887776666544 001111111111111111111 112
Q ss_pred HHHHHHHHHHHHHHhhcccchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH-hhhcchhHHHHHHHHHH
Q 042030 202 VLVYVGIMGFSIAFALGMAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTME-WSRTGTFSIFWVICAAA 280 (322)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 280 (322)
+..++.-.+.+...+ .++++...+..++.|+++|++++++......+...++..+..++.+ .||..+|.+.+++.+++
T Consensus 102 ~~Ll~aR~~~g~a~G-~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~ 180 (394)
T COG2814 102 AVLLLARALAGLAHG-VFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLA 180 (394)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 333333333333332 3566678999999999999999999999999999999999999999 89999999999999999
Q ss_pred HHHHHhhcc
Q 042030 281 VLFVAFLVP 289 (322)
Q Consensus 281 ~~~~~~~~~ 289 (322)
.+..+..+|
T Consensus 181 ~~~~~~~lP 189 (394)
T COG2814 181 LLLLWKLLP 189 (394)
T ss_pred HHHHHHhCC
Confidence 998898899
No 122
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=98.66 E-value=1.5e-06 Score=74.52 Aligned_cols=75 Identities=13% Similarity=0.100 Sum_probs=60.3
Q ss_pred cchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH-hhhcchhHHHHHHHHHHHHHHHhhccCCCCC
Q 042030 220 AGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTME-WSRTGTFSIFWVICAAAVLFVAFLVPETKGR 294 (322)
Q Consensus 220 ~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~et~~~ 294 (322)
.+..+.++.|.+|++.|+++.+..+....++..++|.+.+.+.+ .++...+.+.+++.++..++.+...||++++
T Consensus 109 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 184 (392)
T PRK10473 109 YVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLSLFILKETRPA 184 (392)
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHHHHHcCCCCCc
Confidence 44557889999999999999999999999999999999887766 6666777887777777777666777876543
No 123
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=98.66 E-value=3.1e-06 Score=77.49 Aligned_cols=72 Identities=10% Similarity=0.035 Sum_probs=51.3
Q ss_pred ccchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH-h-------------hhcchhHHHHHHHHHHHHHH
Q 042030 219 MAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTME-W-------------SRTGTFSIFWVICAAAVLFV 284 (322)
Q Consensus 219 ~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-~-------------~~~~~~~~~~~~~~~~~~~~ 284 (322)
..++...++.|.+|++.|+..+++...+..+|.++++.+...+.. . ++...+++ .++..+.+++.
T Consensus 272 ~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i-~~lp~ll~ll~ 350 (742)
T TIGR01299 272 AIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIV-CAFPCVFAIGA 350 (742)
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhccccccccccHHHHHHH-HHHHHHHHHHH
Confidence 456778999999999999999999999999999998887655543 2 22333333 33344444455
Q ss_pred HhhccCC
Q 042030 285 AFLVPET 291 (322)
Q Consensus 285 ~~~~~et 291 (322)
++++||+
T Consensus 351 ~~~lPES 357 (742)
T TIGR01299 351 LTFMPES 357 (742)
T ss_pred HHHcCCC
Confidence 6678987
No 124
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=98.58 E-value=2.7e-06 Score=74.18 Aligned_cols=71 Identities=14% Similarity=0.067 Sum_probs=55.9
Q ss_pred chhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH--hhhcchhHHHHHHHHHHHHHHHhhccCC
Q 042030 221 GLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTME--WSRTGTFSIFWVICAAAVLFVAFLVPET 291 (322)
Q Consensus 221 ~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~et 291 (322)
+.....+.|.+|++.|+++.++.+....+++.+++.+.+...+ .++...|.+.++++++..+..++++||+
T Consensus 137 ~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~ 209 (438)
T TIGR00712 137 PPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALFAFAMMRDT 209 (438)
T ss_pred HHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 4446778899999999999999999999999998887765443 4677778888888777766666667765
No 125
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=98.57 E-value=7.1e-06 Score=70.44 Aligned_cols=74 Identities=12% Similarity=0.082 Sum_probs=59.2
Q ss_pred ccchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH-hhhcchhHHHHHHHHHHHHHHHhhccCCC
Q 042030 219 MAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTME-WSRTGTFSIFWVICAAAVLFVAFLVPETK 292 (322)
Q Consensus 219 ~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~et~ 292 (322)
..+....+++|.+|++.|+.+.+.......++..++|.+.+.+.+ .++...|.+.+++++++.+......||++
T Consensus 125 ~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~~~~~~p~~~ 199 (394)
T PRK10213 125 FWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFWIIKSLPSLP 199 (394)
T ss_pred HHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 455667888999999999999999999999999999999998888 67777887777666655554444567653
No 126
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=98.56 E-value=7.4e-06 Score=72.15 Aligned_cols=67 Identities=13% Similarity=0.093 Sum_probs=50.5
Q ss_pred hhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH----------hhhcchhHHHHHHHHHHHHHHHhhccC
Q 042030 224 SVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTME----------WSRTGTFSIFWVICAAAVLFVAFLVPE 290 (322)
Q Consensus 224 ~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~e 290 (322)
..+++|.+|++.|+.+.|+.+..+++|+.+++.+.+.+.. .++...|.+.+++.++..+..+++.++
T Consensus 145 ~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~~~ 221 (476)
T PLN00028 145 QYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLTLGQD 221 (476)
T ss_pred HHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 4568899999999999999998888888888777665432 257778888888777766655554433
No 127
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=98.55 E-value=7e-06 Score=71.89 Aligned_cols=73 Identities=11% Similarity=-0.047 Sum_probs=50.4
Q ss_pred cchhhhhhccccCccccchhHHHHHHHHHHHHHH-HHHHHHHHHH-hhhcchhHHHHHHHHHHHHHHHhhccCCC
Q 042030 220 AGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWI-VTYTFHFTME-WSRTGTFSIFWVICAAAVLFVAFLVPETK 292 (322)
Q Consensus 220 ~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~et~ 292 (322)
.+.....+.|.+|++.|+++.|+.+....+|+.+ +|.+...+.. .++...+.+.+++.++..++..+++||+.
T Consensus 138 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~l~~~~~~~~~ 212 (452)
T PRK11273 138 WPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVALFAFAMMRDTP 212 (452)
T ss_pred chHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCH
Confidence 3444566789999999999999988888888644 4443322222 46666777777777776666666777753
No 128
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=98.54 E-value=9.3e-06 Score=69.88 Aligned_cols=162 Identities=12% Similarity=0.128 Sum_probs=88.6
Q ss_pred HHHHHHHHHHhhhhccchhhhHhcHHHHHHHcCCCchhHHHHHHHHH----------------HHH-HHHHHHHHHHHHH
Q 042030 125 YSLSVGVGLMVMQPFVGSAAIAYYASYIIAAADLSTDIGSISMAIIQ----------------AST-IWMGLSLTIIALA 187 (322)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~----------------~~~-~~~~~~~~~~~~~ 187 (322)
++......+................|.+.++.|.+....+.+.+... .+. ..+.++.++.++.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~ 90 (405)
T TIGR00891 11 WNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAG 90 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 33444444444444445566677778888888888776555554443 110 0111111111111
Q ss_pred HHhccCCCCCCchhHHHHHHHHHHHHHHhhcccchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH-hh-
Q 042030 188 FGLQDTHLWNEATPVLVYVGIMGFSIAFALGMAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTME-WS- 265 (322)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~- 265 (322)
....... .+.+..+...++.+.+.+ ...+....++.|.+|++.|+.+.++.+....+|..+++.+.+.+.+ .+
T Consensus 91 ~~~~~~~----~~~~~l~~~~~l~G~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~ 165 (405)
T TIGR00891 91 TLACGFA----PGYITMFIARLVIGIGMG-GEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGD 165 (405)
T ss_pred HHHHHHh----ccHHHHHHHHHHHHhhhh-hhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 1111000 112233333333333322 3345557888999999999999999999999999999999887776 33
Q ss_pred -hcchhHHHHHHHHHHHHHHHhhccCCC
Q 042030 266 -RTGTFSIFWVICAAAVLFVAFLVPETK 292 (322)
Q Consensus 266 -~~~~~~~~~~~~~~~~~~~~~~~~et~ 292 (322)
+...+.+.++. .+..++.....||++
T Consensus 166 ~w~~~f~~~~~~-~~~~~~~~~~~~~~~ 192 (405)
T TIGR00891 166 GWRALFFISILP-IIFALWLRKNIPEAE 192 (405)
T ss_pred cHHHHHHHHHHH-HHHHHHHHHhCCCCh
Confidence 45555543333 333333445567754
No 129
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=98.53 E-value=3.5e-06 Score=72.69 Aligned_cols=73 Identities=14% Similarity=-0.003 Sum_probs=56.1
Q ss_pred cchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH-hhhcchhHHHHHHHHHHHHHHHhhccCCC
Q 042030 220 AGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTME-WSRTGTFSIFWVICAAAVLFVAFLVPETK 292 (322)
Q Consensus 220 ~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~et~ 292 (322)
.+....++.|.+|++.|+++.++.+....+|..+++.+...+.+ .++...+.+.+++.++..+....++||+.
T Consensus 121 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 194 (406)
T PRK11551 121 LPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPLLMRWLPESR 194 (406)
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 45557889999999999999999999999999999988776665 56666677766665555555556677753
No 130
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=98.53 E-value=1.9e-06 Score=76.10 Aligned_cols=75 Identities=19% Similarity=0.169 Sum_probs=61.8
Q ss_pred ccchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH-hhhcchhHHHHHHHHHHHHHHHhhccCCCC
Q 042030 219 MAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTME-WSRTGTFSIFWVICAAAVLFVAFLVPETKG 293 (322)
Q Consensus 219 ~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~et~~ 293 (322)
..+....++.|.+|++.|+.+.++......+|..++|.+.+.+.+ .++.+.|.+.+.+.++..++..+..||+++
T Consensus 107 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~ 182 (485)
T TIGR00711 107 LIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFFILPRDKP 182 (485)
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHHHHHcCCccc
Confidence 456668899999999999999999999999999999999998887 777888888777777776666666776543
No 131
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=98.53 E-value=3.9e-06 Score=74.32 Aligned_cols=162 Identities=14% Similarity=-0.000 Sum_probs=93.2
Q ss_pred HHHHHHHHhhhhccchhhhHhcHHHHHHHcCCCchhHHHHHHHHH----------------HHH-HHHHHHHHHHHHHHH
Q 042030 127 LSVGVGLMVMQPFVGSAAIAYYASYIIAAADLSTDIGSISMAIIQ----------------AST-IWMGLSLTIIALAFG 189 (322)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~----------------~~~-~~~~~~~~~~~~~~~ 189 (322)
.+....+..+....-...+..-.|.+.++.|.+....+++..... .+. ..+..+.++......
T Consensus 7 ~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~ 86 (495)
T PRK14995 7 TLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASL 86 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 334444444444444556677789999888887664444443322 000 011111111111111
Q ss_pred hccCCCCCCchhHHHHHHHHHHHHHHhhcccchhhhhhcccc-CccccchhHHHHHHHHHHHHHHHHHHHHHHHH-hhhc
Q 042030 190 LQDTHLWNEATPVLVYVGIMGFSIAFALGMAGLPSVIMAEIF-PINIKGSAGSLVILLHNCSNWIVTYTFHFTME-WSRT 267 (322)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~ 267 (322)
..... .+.+..++.-.+.+.+.+ +..+.....+.+.+ |++.|+++.|+......+|..++|.+.+.+.+ .++.
T Consensus 87 ~~~~a----~~~~~li~~r~l~G~g~~-~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr 161 (495)
T PRK14995 87 AAAFS----PTASWLIATRALLAIGAA-MIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWG 161 (495)
T ss_pred HHHHc----CCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChH
Confidence 10000 112333333333333332 23344444455554 77899999999999999999999999999988 6788
Q ss_pred chhHHHHHHHHHHHHHHHhhccCCCC
Q 042030 268 GTFSIFWVICAAAVLFVAFLVPETKG 293 (322)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~et~~ 293 (322)
+.|++...++++..++...++|+.++
T Consensus 162 ~~f~i~~~~~~~~~~l~~~~l~~~~~ 187 (495)
T PRK14995 162 SVFLINVPIVLVVMGLTARYVPRQAG 187 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 88888877777777766677777543
No 132
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=98.50 E-value=8.6e-07 Score=75.47 Aligned_cols=74 Identities=15% Similarity=0.065 Sum_probs=56.4
Q ss_pred ccchhhhhhccccCccccchhHHHHHHHHHHHHHHHHH-HHHHHHH-hhhcchhHHHHHHHHHHHHHHHhhccCCC
Q 042030 219 MAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTY-TFHFTME-WSRTGTFSIFWVICAAAVLFVAFLVPETK 292 (322)
Q Consensus 219 ~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~et~ 292 (322)
..+....++.|.+|++.|+.+.++.+....+|..++|. +...+.+ .++...+.+.+++.++..++.+.+.||++
T Consensus 100 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (379)
T TIGR00881 100 GWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIVSLICFLLLRDSP 175 (379)
T ss_pred cCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHheeeCCCc
Confidence 45666889999999999999999999999999999994 5444444 56667777777777666666666666653
No 133
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=98.49 E-value=6.5e-06 Score=64.83 Aligned_cols=40 Identities=15% Similarity=0.155 Sum_probs=37.2
Q ss_pred hhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 042030 224 SVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTME 263 (322)
Q Consensus 224 ~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~ 263 (322)
|..++-+.|.+.-|++.|+++.+.++|-.+.|.+.+.+.+
T Consensus 374 WP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d 413 (459)
T KOG4686|consen 374 WPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIAD 413 (459)
T ss_pred hhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeec
Confidence 7778888899999999999999999999999999998887
No 134
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=98.49 E-value=1.9e-05 Score=68.10 Aligned_cols=74 Identities=14% Similarity=0.048 Sum_probs=59.1
Q ss_pred ccchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH-hhhcchhHHHHHHHHHHHHHHHhhccCCC
Q 042030 219 MAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTME-WSRTGTFSIFWVICAAAVLFVAFLVPETK 292 (322)
Q Consensus 219 ~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~et~ 292 (322)
..+....+..|.+|++.|+.+.+..+....+|..++|.+.+.+.+ .++...+.+.+++.++..+..+++.||..
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (408)
T PRK09874 123 FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLVTLFCIRENF 197 (408)
T ss_pred hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence 345556678899999999999999999999999999999998877 67777788777777777666666667653
No 135
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=98.48 E-value=1.2e-05 Score=69.29 Aligned_cols=73 Identities=14% Similarity=0.149 Sum_probs=59.1
Q ss_pred ccchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhccCC
Q 042030 219 MAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTMEWSRTGTFSIFWVICAAAVLFVAFLVPET 291 (322)
Q Consensus 219 ~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~et 291 (322)
..+....++.|.+|++.|+++.|+.+....+|..++|.+.+.+.+.++...|.+.+++.++.+++.....||.
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~~~g~~~~f~~~~~~~~~~~i~~~~~~~~~ 188 (400)
T PRK11646 116 FDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLLQYDFRLVCATGAVLFVLAAAFNAWLLPAY 188 (400)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 3455577889999999999999999999999999999999988877777778877777666665555556664
No 136
>PRK03893 putative sialic acid transporter; Provisional
Probab=98.48 E-value=5.9e-06 Score=73.28 Aligned_cols=72 Identities=15% Similarity=0.288 Sum_probs=51.5
Q ss_pred ccchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH-hhhcchhHHHHHHHHHHHHHHHhhccCC
Q 042030 219 MAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTME-WSRTGTFSIFWVICAAAVLFVAFLVPET 291 (322)
Q Consensus 219 ~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~et 291 (322)
..+....++.|.+|++.|+.+.++......+|..++|.+.+.+.+ .++...+.+. ++.++..++.....||.
T Consensus 125 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~-~~~~~~~~~~~~~~p~~ 197 (496)
T PRK03893 125 EYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIG-ILPIIFALWLRKNLPEA 197 (496)
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHH-HHHHHHHHHHHHhCCCc
Confidence 445557888999999999999999999999999999999998877 5666555543 22222233333345554
No 137
>PRK10504 putative transporter; Provisional
Probab=98.47 E-value=1.2e-05 Score=70.92 Aligned_cols=73 Identities=16% Similarity=0.084 Sum_probs=58.6
Q ss_pred ccchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH-hhhcchhHHHHHHHHHHHHHHHhhccCC
Q 042030 219 MAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTME-WSRTGTFSIFWVICAAAVLFVAFLVPET 291 (322)
Q Consensus 219 ~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~et 291 (322)
..+....++.|.+|++.|+++.++.+....+|..++|.+.+.+.+ .++...|.+...++.+..+......|+.
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~ 188 (471)
T PRK10504 115 MVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLMPNY 188 (471)
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 345667888999999999999999999999999999999998888 6777778777766666666665555554
No 138
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=98.45 E-value=3.5e-05 Score=66.48 Aligned_cols=74 Identities=15% Similarity=0.099 Sum_probs=59.0
Q ss_pred cchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH-hhhcchhHHHHHHHHHHHHHHHhhccCCCC
Q 042030 220 AGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTME-WSRTGTFSIFWVICAAAVLFVAFLVPETKG 293 (322)
Q Consensus 220 ~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~et~~ 293 (322)
.+....++.|.+|++.|..+.++......++..++|.+.+.+.+ .++...+.+.+++.++..+..+...||+++
T Consensus 119 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (406)
T PRK15402 119 GAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSFFGLWRAMPETAG 193 (406)
T ss_pred HHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHhCCCCCc
Confidence 34557788899999999999999888888899999999888877 677777887777777776666666787654
No 139
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.43 E-value=6.5e-07 Score=73.59 Aligned_cols=63 Identities=24% Similarity=0.241 Sum_probs=53.3
Q ss_pred ceeeeeecCCC-CchhhHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHhhHHHHHHHHHhhccCC
Q 042030 3 PIYIAEITPKN-IRGAFTATSQFLIVSGMSVMYLVGTIV----SWRALALIAAVPCLLQVVGLFFIPE 65 (322)
Q Consensus 3 ~~~i~e~~~~~-~rg~~~~~~~~~~~~G~~l~~~~~~~~----~Wr~~f~~~~~~~~i~~~~~~~lpe 65 (322)
.++++|.+|++ +||+++|+...+.++|.++||..++.+ |-+.+|++.++..++-..+.+++-|
T Consensus 181 lamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~ 248 (464)
T KOG3764|consen 181 LAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIE 248 (464)
T ss_pred HHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeC
Confidence 35677788765 589999999999999999999999876 9999999999999888777666544
No 140
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=98.43 E-value=2.1e-05 Score=65.56 Aligned_cols=76 Identities=14% Similarity=0.161 Sum_probs=54.9
Q ss_pred cccchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHh--hhcchhHHHHHHHHHHHHHHHhhccCCCCC
Q 042030 218 GMAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTMEW--SRTGTFSIFWVICAAAVLFVAFLVPETKGR 294 (322)
Q Consensus 218 ~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~et~~~ 294 (322)
+....+-+|..++.|+++-+..+|+.+..++..++++|+.++.+.+. .....+..+.++..++.+ .++..|+.+++
T Consensus 357 ~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~-~L~~v~~~~~~ 434 (438)
T COG2270 357 GAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLL-LLLRVKVPGRR 434 (438)
T ss_pred hHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHh-hEEeecCCCCc
Confidence 45566788999999999999999999999999999999999988882 233334444444444433 34445554333
No 141
>PRK10091 MFS transport protein AraJ; Provisional
Probab=98.43 E-value=1.5e-05 Score=68.12 Aligned_cols=73 Identities=16% Similarity=0.189 Sum_probs=57.5
Q ss_pred chhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH-hhhcchhHHHHHHHHHHHHHHHhhccCCCC
Q 042030 221 GLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTME-WSRTGTFSIFWVICAAAVLFVAFLVPETKG 293 (322)
Q Consensus 221 ~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~et~~ 293 (322)
+....+..|.+|++.|+.+.+.......++..++|.+.+.+.+ .++...+.+.+.+.++..+..+...||.++
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~lp~~~~ 183 (382)
T PRK10091 110 GVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLASIYFWVPDIRD 183 (382)
T ss_pred HHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhCCCCCc
Confidence 4446678899999999999999988888999999998888777 677788888777776666655666787543
No 142
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=98.43 E-value=7.2e-06 Score=72.13 Aligned_cols=71 Identities=10% Similarity=-0.022 Sum_probs=51.8
Q ss_pred cchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHh----hhcchhHHHHHHHHHHHHHHHhhccC
Q 042030 220 AGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTMEW----SRTGTFSIFWVICAAAVLFVAFLVPE 290 (322)
Q Consensus 220 ~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~e 290 (322)
.+....+++|.+|++.|+.+.|+......+|..+++.+...+.+. ++...|.+.+++.++.+++.+++.++
T Consensus 140 ~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~ 214 (467)
T PRK09556 140 GPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIALIIGFIGLRYGSD 214 (467)
T ss_pred chHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHhCCC
Confidence 456678899999999999999999999999999998887665552 24445666566666555555555443
No 143
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=98.42 E-value=4e-05 Score=65.89 Aligned_cols=74 Identities=12% Similarity=0.125 Sum_probs=56.3
Q ss_pred cchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH-hhhcchhHHHHHHHHHHHHHHHhhccCCCC
Q 042030 220 AGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTME-WSRTGTFSIFWVICAAAVLFVAFLVPETKG 293 (322)
Q Consensus 220 ~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~et~~ 293 (322)
.+....+..|.++.+.|+.+.+..+....++..++|.+.+.+.+ .++...+.+.+++.++..+....+.||+++
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 188 (394)
T PRK11652 114 GVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFSMARWMPETRP 188 (394)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHhCCccCc
Confidence 34446677888998899999999888888899999999888877 677777777776666655555566777643
No 144
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=98.42 E-value=2e-05 Score=68.11 Aligned_cols=74 Identities=18% Similarity=0.055 Sum_probs=60.5
Q ss_pred cchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH-hhhcchhHHHHHHHHHHHHHHHhhccCCCC
Q 042030 220 AGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTME-WSRTGTFSIFWVICAAAVLFVAFLVPETKG 293 (322)
Q Consensus 220 ~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~et~~ 293 (322)
.+..+.+..|.+|++.|+++++..+....++..++|.+.+.+.+ .++...|.+.+++.+++.+..++.+||+++
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~lp~~~~ 196 (413)
T PRK15403 122 ATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGLLLAMPETVK 196 (413)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence 34456788899999999999999999999999999999988877 578888888888777776655666788754
No 145
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=98.41 E-value=5.4e-05 Score=66.20 Aligned_cols=54 Identities=15% Similarity=0.018 Sum_probs=43.7
Q ss_pred ceeeeeecCCC--CchhhHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHhhHHHHHH
Q 042030 3 PIYIAEITPKN--IRGAFTATSQFLIVSGMSVMYLVGTIV----SWRALALIAAVPCLLQ 56 (322)
Q Consensus 3 ~~~i~e~~~~~--~rg~~~~~~~~~~~~G~~l~~~~~~~~----~Wr~~f~~~~~~~~i~ 56 (322)
+++++|.+|++ +|....++...+.++|..+++.+...+ |||+.|.+.++..++.
T Consensus 122 ~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~ 181 (493)
T PRK15462 122 SCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAG 181 (493)
T ss_pred HHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHH
Confidence 46788999875 788899999998999999998888765 8999999876544433
No 146
>PRK10489 enterobactin exporter EntS; Provisional
Probab=98.41 E-value=1.9e-05 Score=68.36 Aligned_cols=71 Identities=8% Similarity=-0.043 Sum_probs=53.1
Q ss_pred chhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH-hhhcchhHHHHHHHHHHHHHHHhhccCCC
Q 042030 221 GLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTME-WSRTGTFSIFWVICAAAVLFVAFLVPETK 292 (322)
Q Consensus 221 ~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~et~ 292 (322)
+....++.|.+|++.|+++.++.+....+|..++|.+.+.+.+ .++.+.+.+.++..+++.+ ....+|+++
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~ 200 (417)
T PRK10489 129 TALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLL-PLLRLPALP 200 (417)
T ss_pred HHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-HHHhCCCCC
Confidence 4446778899999999999999999999999999999998877 5666666665555544443 344566643
No 147
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=98.38 E-value=1.1e-05 Score=68.78 Aligned_cols=74 Identities=19% Similarity=0.261 Sum_probs=60.3
Q ss_pred ccchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH-hhhcchhHHHHHHHHHHHHHHHhhccCCC
Q 042030 219 MAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTME-WSRTGTFSIFWVICAAAVLFVAFLVPETK 292 (322)
Q Consensus 219 ~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~et~ 292 (322)
..+....++.|.+|++.|+++.++.+....+|..++|.+.+.+.+ .++...+.+.+.+.++..+......||++
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (377)
T PRK11102 96 ASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALVFFFIPETL 170 (377)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCccC
Confidence 345557889999999999999999999999999999999988887 67777777777777777666666677754
No 148
>PRK12307 putative sialic acid transporter; Provisional
Probab=98.38 E-value=1.4e-05 Score=69.52 Aligned_cols=54 Identities=19% Similarity=0.250 Sum_probs=44.1
Q ss_pred ccchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH-hhhcchhHH
Q 042030 219 MAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTME-WSRTGTFSI 272 (322)
Q Consensus 219 ~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~ 272 (322)
..+....++.|.+|++.|+++.++......+|..+++.+.+.+.+ .++...+.+
T Consensus 123 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i 177 (426)
T PRK12307 123 EYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFV 177 (426)
T ss_pred HHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHH
Confidence 445557888999999999999999999889999999988887766 566666654
No 149
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=98.37 E-value=4.1e-05 Score=66.21 Aligned_cols=73 Identities=15% Similarity=-0.015 Sum_probs=51.1
Q ss_pred ccchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH------h-------------hhcchhHHHHHHHHH
Q 042030 219 MAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTME------W-------------SRTGTFSIFWVICAA 279 (322)
Q Consensus 219 ~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~------~-------------~~~~~~~~~~~~~~~ 279 (322)
..+.....+++.+|++.||++.|+....+++|..+++.+.+.+.. . +......++..+.++
T Consensus 144 ~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv 223 (462)
T PRK15034 144 NFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAI 223 (462)
T ss_pred hHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHH
Confidence 445557789999999999999999988888888887777765442 1 123344566666666
Q ss_pred HHHHHHhhccCC
Q 042030 280 AVLFVAFLVPET 291 (322)
Q Consensus 280 ~~~~~~~~~~et 291 (322)
.+++.++++++.
T Consensus 224 ~~i~~~~~~~~~ 235 (462)
T PRK15034 224 ATIAAWSGMNDI 235 (462)
T ss_pred HHHHHHHhCCCc
Confidence 666666665553
No 150
>PRK03699 putative transporter; Provisional
Probab=98.36 E-value=6.2e-05 Score=64.71 Aligned_cols=64 Identities=6% Similarity=0.128 Sum_probs=49.5
Q ss_pred cchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH--hhhcchhHHHHHHHHHHHHH
Q 042030 220 AGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTME--WSRTGTFSIFWVICAAAVLF 283 (322)
Q Consensus 220 ~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 283 (322)
.+....++.|.+|++.|+.+.+..+....+++.++|.+.+.+.+ .++...+.+.+++.++..++
T Consensus 113 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~~ 178 (394)
T PRK03699 113 MSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIFIL 178 (394)
T ss_pred ccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence 34456788999999999999998888888899999998887664 56777777777666555443
No 151
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=98.36 E-value=2e-05 Score=65.62 Aligned_cols=75 Identities=13% Similarity=0.048 Sum_probs=60.7
Q ss_pred HhhcccchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH-hh---hcchhHHHHHHHHHHHHHHHhhccC
Q 042030 215 FALGMAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTME-WS---RTGTFSIFWVICAAAVLFVAFLVPE 290 (322)
Q Consensus 215 ~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~e 290 (322)
...+...+...++++-||++++|.+.|+.. .+|+|..+..++.|.+.. .+ +.....++....++.++..++...+
T Consensus 117 ~~GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d 195 (417)
T COG2223 117 LAGASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMND 195 (417)
T ss_pred cccceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 333445555788999999999999999998 999999999999998888 55 6777777777777777777776654
No 152
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=98.35 E-value=1.1e-05 Score=70.88 Aligned_cols=75 Identities=12% Similarity=0.108 Sum_probs=61.1
Q ss_pred hcccchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH-h-hhcchhHHHHHHHHHHHHHHHhhccCC
Q 042030 217 LGMAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTME-W-SRTGTFSIFWVICAAAVLFVAFLVPET 291 (322)
Q Consensus 217 ~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~et 291 (322)
....+....+++|.+|++.|+++.++......+|..+++.+.+.+.+ . ++...|.+.+++.++..++.+.+.+|.
T Consensus 146 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~ 222 (465)
T TIGR00894 146 GSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADD 222 (465)
T ss_pred ccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCC
Confidence 33556668899999999999999999999999999999999998887 3 788888888887777666555555543
No 153
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=98.33 E-value=3.4e-05 Score=67.46 Aligned_cols=61 Identities=18% Similarity=0.168 Sum_probs=49.4
Q ss_pred cchhhhhhccccCcc--ccchhHHHHHHHHHHHHHHHHHHHHHHHH-hhhcchhHHHHHHHHHH
Q 042030 220 AGLPSVIMAEIFPIN--IKGSAGSLVILLHNCSNWIVTYTFHFTME-WSRTGTFSIFWVICAAA 280 (322)
Q Consensus 220 ~~~~~~~~~e~~p~~--~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 280 (322)
.+...++++|.+|++ .|+++.++.+...++|+.++|.+.+++.+ .++...|...++..+++
T Consensus 118 ~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~ 181 (493)
T PRK15462 118 KSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAG 181 (493)
T ss_pred cccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHH
Confidence 355578899999986 79999999999999999999999999987 77777777655443333
No 154
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=98.33 E-value=1.7e-05 Score=67.32 Aligned_cols=72 Identities=10% Similarity=-0.132 Sum_probs=60.9
Q ss_pred chhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH-hhhcchhHHHHHHHHHHHHHHHhhccCCC
Q 042030 221 GLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTME-WSRTGTFSIFWVICAAAVLFVAFLVPETK 292 (322)
Q Consensus 221 ~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~et~ 292 (322)
.......+|.+|++.|+++.++......+|..+++.+.+.+.+ .++...|.+.+++.++..++.+..+||..
T Consensus 97 ~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~~lp~~p 169 (368)
T TIGR00903 97 LNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILVLAALPALP 169 (368)
T ss_pred HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 3335566899999999999999999999999999999998887 78888888888888888777777888864
No 155
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=98.33 E-value=6.6e-06 Score=69.30 Aligned_cols=74 Identities=15% Similarity=0.212 Sum_probs=60.1
Q ss_pred cccchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH-hhhcchhHHHHHHHHHHHHHHHhhccCC
Q 042030 218 GMAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTME-WSRTGTFSIFWVICAAAVLFVAFLVPET 291 (322)
Q Consensus 218 ~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~et 291 (322)
...+....++.|.+|++.|+.+.+.......+|..++|.+.+.+.+ .++...+.+.+++.++..++...+.+++
T Consensus 101 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~ 175 (352)
T PF07690_consen 101 FFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAILFILFLPEP 175 (352)
T ss_dssp HHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHHHHCCC---
T ss_pred cccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccchhhhhhhhHhhhhhhc
Confidence 4566668899999999999999999999999999999999998875 6778888888888888877544555443
No 156
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=98.33 E-value=9.9e-08 Score=84.22 Aligned_cols=163 Identities=17% Similarity=0.209 Sum_probs=0.0
Q ss_pred CcceeeeeecCCCCchhhHHHHHHHHHHHHHHHHHhhhhh--------------------------hhHHHHHHhhHHHH
Q 042030 1 MIPIYIAEITPKNIRGAFTATSQFLIVSGMSVMYLVGTIV--------------------------SWRALALIAAVPCL 54 (322)
Q Consensus 1 ~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~l~~~~~~~~--------------------------~Wr~~f~~~~~~~~ 54 (322)
+..+|+-|..++++-+...++......+|.++|.++++.. .|-.-|++.+...+
T Consensus 161 LG~tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~ 240 (539)
T PF03137_consen 161 LGITYIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLF 240 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ceeeeeccccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHH
Confidence 3578999999999999999999999999999998888543 15455555555555
Q ss_pred HHHHHhhccCCC-hHHHHhcCCHHHHHHHHHHHhCCchhhhhhHHHHHHhhhhcccccccchhhhcchhhHHHHHHHHHH
Q 042030 55 LQVVGLFFIPES-PRWLAKIGKEKELETTLQCLRGKTADISMESADIRDCTQTFEKDSKAGIFDLFQRRYAYSLSVGVGL 133 (322)
Q Consensus 55 i~~~~~~~lpes-p~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 133 (322)
+..+..+++|.. |+. ++..++.+...++....+.+...+.++.+ .....-+.-....+.++++ ++++...+
T Consensus 241 l~aipl~~FPk~lp~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~df~~~l~~Ll~N----p~f~~~~l 312 (539)
T PF03137_consen 241 LSAIPLFFFPKKLPGT---SERQEEKESSERKEEDSDKDSFKDPKSKK-SFGKSIKDFPKALKRLLTN----PVFMCLIL 312 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHcCCccCCCc---ccccchhhhhhcchhhhhhhccccccccc-chhhhhhhHHHHHHHHhcC----hHHHHHHH
Confidence 554444555543 221 00111100000000000000000000000 0000001111223334443 45555555
Q ss_pred HhhhhccchhhhHhcHHHHHHHc-CCCchhHHHHHHHHH
Q 042030 134 MVMQPFVGSAAIAYYASYIIAAA-DLSTDIGSISMAIIQ 171 (322)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~ 171 (322)
..........++..|.|-+++.- +.++..++.+.+...
T Consensus 313 a~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ 351 (539)
T PF03137_consen 313 AGVFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVS 351 (539)
T ss_dssp ---------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhh
Confidence 55555556778889999888864 888776666666544
No 157
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=98.30 E-value=0.00021 Score=59.73 Aligned_cols=37 Identities=19% Similarity=0.296 Sum_probs=33.0
Q ss_pred eeeeeecCCCCchhhHHHHHHHHHHHHHHHHHhhhhh
Q 042030 4 IYIAEITPKNIRGAFTATSQFLIVSGMSVMYLVGTIV 40 (322)
Q Consensus 4 ~~i~e~~~~~~rg~~~~~~~~~~~~G~~l~~~~~~~~ 40 (322)
++++|..|+++|++..++.-.+..+|.+++.++.+.+
T Consensus 112 ALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~l 148 (403)
T PF03209_consen 112 ALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRL 148 (403)
T ss_pred HHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999998887655
No 158
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=98.28 E-value=5.6e-05 Score=63.96 Aligned_cols=67 Identities=10% Similarity=-0.017 Sum_probs=53.5
Q ss_pred ccchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH-hhhcchhHHHHHHHHHHHHHHH
Q 042030 219 MAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTME-WSRTGTFSIFWVICAAAVLFVA 285 (322)
Q Consensus 219 ~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 285 (322)
..+....+++|.+|++.|+.+.+..+....+|..++|.+.+.+.+ .++...+.+.++..+++.+..+
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~ 176 (365)
T TIGR00900 109 FTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIV 176 (365)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 355568899999999999999999999999999999999998877 6667777666665555544333
No 159
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=98.24 E-value=6.5e-05 Score=63.80 Aligned_cols=72 Identities=17% Similarity=0.114 Sum_probs=49.6
Q ss_pred cchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHh-----------hhcchh-HHHHHHHHHHHHHHHhh
Q 042030 220 AGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTMEW-----------SRTGTF-SIFWVICAAAVLFVAFL 287 (322)
Q Consensus 220 ~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~-----------~~~~~~-~~~~~~~~~~~~~~~~~ 287 (322)
.+....+++|.+|++.|+.+.++......+|..+++.+.+.+... ++...+ +..+.+..+..++.+..
T Consensus 108 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 187 (366)
T TIGR00886 108 FASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGILLLPALLIFFV 187 (366)
T ss_pred hHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHh
Confidence 344577889999999999999999888888888888877665541 455566 33355544444444455
Q ss_pred ccCC
Q 042030 288 VPET 291 (322)
Q Consensus 288 ~~et 291 (322)
.+|+
T Consensus 188 ~~~~ 191 (366)
T TIGR00886 188 GADT 191 (366)
T ss_pred cccC
Confidence 5554
No 160
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=98.22 E-value=3e-05 Score=68.24 Aligned_cols=72 Identities=15% Similarity=0.155 Sum_probs=51.9
Q ss_pred ccchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHH---HHHHH-hhhcchhHHHHHHHHHHHHHHHhhccCC
Q 042030 219 MAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTF---HFTME-WSRTGTFSIFWVICAAAVLFVAFLVPET 291 (322)
Q Consensus 219 ~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~et 291 (322)
..+....+++|.+|++.|+.+.++.+....+|..+++.+. ....+ .++...|.+.+...++ .++..+++||+
T Consensus 144 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~-~~~~~~~l~~~ 219 (481)
T TIGR00879 144 ASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGL-LFLGLFFLPES 219 (481)
T ss_pred HHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHH-HHHHHhcCCCC
Confidence 3455678999999999999999999999999999999987 33323 5566666664444333 33345567775
No 161
>PTZ00207 hypothetical protein; Provisional
Probab=98.21 E-value=0.00025 Score=63.31 Aligned_cols=68 Identities=9% Similarity=0.094 Sum_probs=48.2
Q ss_pred hhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhccC
Q 042030 222 LPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTMEWSRTGTFSIFWVICAAAVLFVAFLVPE 290 (322)
Q Consensus 222 ~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 290 (322)
.....+.+.|| +.||.+.|+......+|+.+.+.+...+...++...+++.+++.++.+++.+.++++
T Consensus 140 ~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~~~~~~fl~l~vl~~vv~ll~~~~vr~ 207 (591)
T PTZ00207 140 GAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFSDNTSAYFFFLMSFALVVGILAIVFMRL 207 (591)
T ss_pred HHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhheeC
Confidence 33556778887 789999999999999999765555544444445566777777777776666665543
No 162
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=98.20 E-value=1.3e-05 Score=69.55 Aligned_cols=47 Identities=19% Similarity=0.226 Sum_probs=39.4
Q ss_pred hhcccchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 042030 216 ALGMAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTME 263 (322)
Q Consensus 216 ~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~ 263 (322)
...+.|. ..+++|+.|+...|+..++...+.++|..++..+...+.+
T Consensus 333 ~i~~mP~-lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~ 379 (433)
T PF03092_consen 333 MIAFMPS-LVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLME 379 (433)
T ss_pred HHHHHHH-HHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444 5678999999999999999999999999999999887776
No 163
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=98.19 E-value=8.6e-05 Score=65.37 Aligned_cols=64 Identities=14% Similarity=0.165 Sum_probs=50.4
Q ss_pred ccchhhhhhccccCccc---cchhHHHHHHHHHHHHHHHHHHHHHHHH-hhhcchhHHHHHHHHHHHH
Q 042030 219 MAGLPSVIMAEIFPINI---KGSAGSLVILLHNCSNWIVTYTFHFTME-WSRTGTFSIFWVICAAAVL 282 (322)
Q Consensus 219 ~~~~~~~~~~e~~p~~~---r~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 282 (322)
..+....+.+|.+|++. |+++.++.+...++|+.++|.+.+.+.+ .++...|...++..+++.+
T Consensus 119 ~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~l 186 (475)
T TIGR00924 119 FKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGLL 186 (475)
T ss_pred ccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH
Confidence 45566788899998754 8899999999999999999999999888 5777777776654444433
No 164
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]
Probab=98.19 E-value=3.1e-05 Score=67.03 Aligned_cols=66 Identities=24% Similarity=0.293 Sum_probs=54.8
Q ss_pred cceeeeeecCCCCchhhHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHhhHHHHHHHHH-hhccCCCh
Q 042030 2 IPIYIAEITPKNIRGAFTATSQFLIVSGMSVMYLVGTIV----SWRALALIAAVPCLLQVVG-LFFIPESP 67 (322)
Q Consensus 2 ~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~l~~~~~~~~----~Wr~~f~~~~~~~~i~~~~-~~~lpesp 67 (322)
+.+|++|....++|....++....+..|..+++.++... |--.+|.+..+..++..+. +.++||+-
T Consensus 133 ~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl 203 (463)
T KOG2816|consen 133 GFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESL 203 (463)
T ss_pred hhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhcccccc
Confidence 467899999999999999999998888888888877665 6777888888888877655 67899974
No 165
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=98.18 E-value=0.00026 Score=61.09 Aligned_cols=152 Identities=9% Similarity=-0.025 Sum_probs=90.4
Q ss_pred hccchhhhHhcHHHHHHHcCCCchhHHHHHHHHH--------------H-----H--HHHHHHHHHHHHHHHHhccCCCC
Q 042030 138 PFVGSAAIAYYASYIIAAADLSTDIGSISMAIIQ--------------A-----S--TIWMGLSLTIIALAFGLQDTHLW 196 (322)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~--------------~-----~--~~~~~~~~~~~~~~~~~~~~~~~ 196 (322)
+...+.....-+|.++++.|++....+.+..+.. . + ...+.++.+..++........ .
T Consensus 11 ~~~~~~~~~~~~~~~l~~~g~~~~~ig~~~~~~~~~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~-~ 89 (402)
T PRK11902 11 SGLPLALTSGTLQAWMTVEGLDIQTIGFFSLVGQAYIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFC-P 89 (402)
T ss_pred HhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhc-C
Confidence 3334566677789999999999886665544333 2 0 111222222221111110000 0
Q ss_pred CCchhHHHHHHHHHHHHHHhhcccchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH--hhhcchhHHHH
Q 042030 197 NEATPVLVYVGIMGFSIAFALGMAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTME--WSRTGTFSIFW 274 (322)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~ 274 (322)
.....+......++ ...+.....+...++++|.+|++.|+.+.++......+|..+++.+...+.+ .++...|.+.+
T Consensus 90 ~~~~~~~l~~~~~~-~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a 168 (402)
T PRK11902 90 PHAALWPLAGLAVL-VAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYLLMA 168 (402)
T ss_pred ccchHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHH
Confidence 00122222222222 2334444566678899999999999999999998888999999998888877 37777788777
Q ss_pred HHHHHHHHHHHhhccCCC
Q 042030 275 VICAAAVLFVAFLVPETK 292 (322)
Q Consensus 275 ~~~~~~~~~~~~~~~et~ 292 (322)
++.++..+. .+..||++
T Consensus 169 ~~~l~~~l~-~~~~~e~~ 185 (402)
T PRK11902 169 GLMLAGALT-TLWAPEPE 185 (402)
T ss_pred HHHHHHHHH-HHhcCCCc
Confidence 766655443 44566654
No 166
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=98.18 E-value=4.9e-05 Score=66.59 Aligned_cols=68 Identities=13% Similarity=0.124 Sum_probs=53.1
Q ss_pred chhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH-hhhcchhHHHHHHHHHHHHHHHhhcc
Q 042030 221 GLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTME-WSRTGTFSIFWVICAAAVLFVAFLVP 289 (322)
Q Consensus 221 ~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (322)
+....++.+.+| +.|+++.|+.+....+|..++|.+.+.+.+ .++...|.+.+++.+++.+..++..+
T Consensus 127 ~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~~~~~~~~~v~~~~~~~ 195 (455)
T TIGR00892 127 QPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLILGGLLLHCCVCGALMRP 195 (455)
T ss_pred hHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCC
Confidence 333566778886 789999999999999999999999988877 78888888888877766554444433
No 167
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=98.16 E-value=9.2e-05 Score=58.51 Aligned_cols=147 Identities=12% Similarity=0.037 Sum_probs=75.1
Q ss_pred cchhhhHhcHHHHHHHcCCCchhHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHhccCCCCCCchh
Q 042030 140 VGSAAIAYYASYIIAAADLSTDIGSISMAIIQ------------------ASTIWMGLSLTIIALAFGLQDTHLWNEATP 201 (322)
Q Consensus 140 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (322)
...|.+..|.|.+-+..|++..+.+.+..... .............+...........- ...
T Consensus 16 Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i-~~~ 94 (250)
T PF06813_consen 16 GTTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYFGILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRI-PSL 94 (250)
T ss_pred CcccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhccHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCcc-Ccc
Confidence 34688899999999999999875554443333 11111111111112111111111100 111
Q ss_pred HHHHHHHHHHHHHHhhcc-cchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHH
Q 042030 202 VLVYVGIMGFSIAFALGM-AGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTMEWSRTGTFSIFWVICAAA 280 (322)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (322)
.....+++.+..+.+.++ ......-..+.|| +.||++.|+.-....+++.+-..++..+.+.+....+.+.+....+.
T Consensus 95 ~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~~~~~fll~la~~~~~v 173 (250)
T PF06813_consen 95 PVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGDDPSSFLLFLAVLPAVV 173 (250)
T ss_pred chHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence 222222332233333332 2333444568998 47999999999998888888777776666543333344444444444
Q ss_pred HHHHHhhc
Q 042030 281 VLFVAFLV 288 (322)
Q Consensus 281 ~~~~~~~~ 288 (322)
.+....++
T Consensus 174 ~l~~~~~v 181 (250)
T PF06813_consen 174 CLVAMFFV 181 (250)
T ss_pred HHHHhhhe
Confidence 33333333
No 168
>TIGR00901 2A0125 AmpG-related permease.
Probab=98.16 E-value=0.0002 Score=60.66 Aligned_cols=74 Identities=12% Similarity=-0.031 Sum_probs=57.2
Q ss_pred ccchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH-hh--------hcchhHHHHHHHHHHHHHHHhhcc
Q 042030 219 MAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTME-WS--------RTGTFSIFWVICAAAVLFVAFLVP 289 (322)
Q Consensus 219 ~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~--------~~~~~~~~~~~~~~~~~~~~~~~~ 289 (322)
..+...++++|.+|++.|+.+.++......+|..+++.+.+.+.+ .+ +...|.+.+++.++..+..++..|
T Consensus 100 ~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~~~~~ 179 (356)
T TIGR00901 100 QDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWTALLILPGLLVTLFLAK 179 (356)
T ss_pred HHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHHHHHHHhcc
Confidence 455667889999999999999999999999999999999887776 45 666777777766665554444567
Q ss_pred CCC
Q 042030 290 ETK 292 (322)
Q Consensus 290 et~ 292 (322)
|.+
T Consensus 180 e~~ 182 (356)
T TIGR00901 180 EPQ 182 (356)
T ss_pred CCC
Confidence 753
No 169
>PRK11043 putative transporter; Provisional
Probab=98.15 E-value=0.00029 Score=60.70 Aligned_cols=66 Identities=11% Similarity=0.144 Sum_probs=51.5
Q ss_pred hhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH-hhhcchhHHHHHHHHHHHHHHHhh
Q 042030 222 LPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTME-WSRTGTFSIFWVICAAAVLFVAFL 287 (322)
Q Consensus 222 ~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 287 (322)
....+..|.+|++.|+...+..+....++..++|.+.+.+.+ .++...+.+.+++.++..+..+..
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 180 (401)
T PRK11043 114 IWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTLRL 180 (401)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHc
Confidence 345678899999988888888888888999999999998887 677777777777766665544443
No 170
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=98.14 E-value=0.00055 Score=60.91 Aligned_cols=43 Identities=12% Similarity=0.064 Sum_probs=36.9
Q ss_pred ccchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHH
Q 042030 219 MAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFT 261 (322)
Q Consensus 219 ~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~ 261 (322)
..+....+.+|.+|++.|+++.++.+....+|..+++.+...+
T Consensus 132 ~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~ 174 (502)
T TIGR00887 132 DYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIV 174 (502)
T ss_pred hhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456689999999999999999999999999998888876644
No 171
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=98.12 E-value=5.1e-05 Score=54.45 Aligned_cols=73 Identities=21% Similarity=0.241 Sum_probs=59.1
Q ss_pred ccchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH-hhhcchhHHHHHHHHHHHHHHHhhccCC
Q 042030 219 MAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTME-WSRTGTFSIFWVICAAAVLFVAFLVPET 291 (322)
Q Consensus 219 ~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~et 291 (322)
..+....+..|.+|++.|+++.+..+....++..++|.+.+.+.+ .++...+.+.+.+.+++.+..+...||+
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (141)
T TIGR00880 68 ALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPET 141 (141)
T ss_pred HHHhHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 345567889999999999999999999999999999999998887 5555677777777777766666666654
No 172
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=98.11 E-value=0.00016 Score=63.89 Aligned_cols=73 Identities=21% Similarity=0.220 Sum_probs=53.4
Q ss_pred ccchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHH---------HhhhcchhHHHHHHHHHHHHHHHhhcc
Q 042030 219 MAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTM---------EWSRTGTFSIFWVICAAAVLFVAFLVP 289 (322)
Q Consensus 219 ~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (322)
..+....+++|.+|++.|+.+.++......+|..+++.+...+. ..++...|.+.+++.++..+ ..+++|
T Consensus 137 ~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~-~~~~l~ 215 (479)
T PRK10077 137 ASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLM-LLYFVP 215 (479)
T ss_pred HhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHH-HHHcCC
Confidence 45666889999999999999999998888888888876654332 14566677776666655544 455678
Q ss_pred CCC
Q 042030 290 ETK 292 (322)
Q Consensus 290 et~ 292 (322)
|+.
T Consensus 216 ~s~ 218 (479)
T PRK10077 216 ETP 218 (479)
T ss_pred CCc
Confidence 864
No 173
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=98.10 E-value=0.00023 Score=62.90 Aligned_cols=67 Identities=15% Similarity=0.180 Sum_probs=50.4
Q ss_pred ccchhhhhhccccCccc--cchhHHHHHHHHHHHHHHHHHHHHHHHH-hhhcchhHHHHHHHHHHHHHHHh
Q 042030 219 MAGLPSVIMAEIFPINI--KGSAGSLVILLHNCSNWIVTYTFHFTME-WSRTGTFSIFWVICAAAVLFVAF 286 (322)
Q Consensus 219 ~~~~~~~~~~e~~p~~~--r~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 286 (322)
..+....++.|.+|++. |+.+.++.+...++|..++|.+.+.+.+ .+++..|.+.++ +++.+++.+.
T Consensus 122 ~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i-~~~~~~~~~~ 191 (489)
T PRK10207 122 FKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGA-GLIIALLVYF 191 (489)
T ss_pred ccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHH-HHHHHHHHHH
Confidence 45566789999999874 5788999999999999999999999988 777777766443 3333333333
No 174
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=98.09 E-value=0.00013 Score=62.88 Aligned_cols=68 Identities=9% Similarity=-0.037 Sum_probs=43.5
Q ss_pred hhhhhccccCccccchhHHHHHHHHHHHH-HHHHHHHHHHHH-hhhcchhHHHHHHHHHHHHHHHhhccC
Q 042030 223 PSVIMAEIFPINIKGSAGSLVILLHNCSN-WIVTYTFHFTME-WSRTGTFSIFWVICAAAVLFVAFLVPE 290 (322)
Q Consensus 223 ~~~~~~e~~p~~~r~~~~~~~~~~~~~g~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e 290 (322)
......+.+|++.|+++.|+.+....+|. .++|.+.+.+.+ .++...++....+..+..++..++.++
T Consensus 126 ~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (402)
T TIGR00897 126 FLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALAFVLTGGVIALFSNKD 195 (402)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHhccCC
Confidence 35567788999999999999999988886 578887776665 443333333333333333333344443
No 175
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=98.06 E-value=5.7e-05 Score=64.23 Aligned_cols=67 Identities=16% Similarity=0.218 Sum_probs=48.7
Q ss_pred hhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH-hhhcchhHHHHHHHHHHHHHHHhhccC
Q 042030 223 PSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTME-WSRTGTFSIFWVICAAAVLFVAFLVPE 290 (322)
Q Consensus 223 ~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e 290 (322)
......|.+| +.|+.+.++......+|..+++.+.+.+.+ .++...+.+.+++.++..+..+.+.++
T Consensus 112 ~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 179 (377)
T TIGR00890 112 ALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIFLLVIVLGAFLIGY 179 (377)
T ss_pred HHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHheec
Confidence 3456677777 569999999988888888776666665555 667777888888777776666655554
No 176
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=98.05 E-value=0.00053 Score=60.78 Aligned_cols=81 Identities=15% Similarity=0.030 Sum_probs=59.6
Q ss_pred hHHHHHHHHHHHHHHhhcccchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH-hhhcchhHHHHHHHHH
Q 042030 201 PVLVYVGIMGFSIAFALGMAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTME-WSRTGTFSIFWVICAA 279 (322)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 279 (322)
.+..++..++ ..+......|...+.++|+.|.+....+.++.....++...+||.+.+.+.. .|....|.+-++..++
T Consensus 103 ~~~Ll~~~fl-~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~ 181 (524)
T PF05977_consen 103 PWLLLILTFL-LGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFFGAAAAFLINALSFLI 181 (524)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444443333 3333444577778999999999999999999999999999999999998888 6766677666555444
Q ss_pred HHH
Q 042030 280 AVL 282 (322)
Q Consensus 280 ~~~ 282 (322)
...
T Consensus 182 ~i~ 184 (524)
T PF05977_consen 182 SIL 184 (524)
T ss_pred HHH
Confidence 433
No 177
>PRK11010 ampG muropeptide transporter; Validated
Probab=98.04 E-value=0.00044 Score=61.25 Aligned_cols=75 Identities=9% Similarity=0.161 Sum_probs=59.6
Q ss_pred hcccchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH--hhhcchhHHHHHHHHHHHHHHHhhccCCC
Q 042030 217 LGMAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTME--WSRTGTFSIFWVICAAAVLFVAFLVPETK 292 (322)
Q Consensus 217 ~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~et~ 292 (322)
....+...++.+|.+|++.|+.+.++.....++|..+++.+...+.+ .++...|.+.+++.++..+..+ +.||+.
T Consensus 122 a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~-~~~e~~ 198 (491)
T PRK11010 122 ASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIATL-LAPEPT 198 (491)
T ss_pred HHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHH-hcCCCc
Confidence 34455667899999999999999999999999999999999888887 3788888888877666655433 467764
No 178
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=98.01 E-value=0.00051 Score=60.96 Aligned_cols=62 Identities=10% Similarity=0.111 Sum_probs=46.9
Q ss_pred ccchhhhhhccccCccc--cchhHHHHHHHHHHHHHHHHHHHHHHHH-hhhcchhHHHHHHHHHH
Q 042030 219 MAGLPSVIMAEIFPINI--KGSAGSLVILLHNCSNWIVTYTFHFTME-WSRTGTFSIFWVICAAA 280 (322)
Q Consensus 219 ~~~~~~~~~~e~~p~~~--r~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 280 (322)
..+....+.+|.+|++. |..+.++.+...++|+.++|.+.+.+.+ .++...|.+.++...++
T Consensus 129 ~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~ 193 (500)
T PRK09584 129 FKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLIT 193 (500)
T ss_pred ccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHH
Confidence 34555678999998653 4567888899999999999999999988 67777777665433333
No 179
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=97.99 E-value=0.00067 Score=58.31 Aligned_cols=76 Identities=12% Similarity=0.017 Sum_probs=55.7
Q ss_pred hhcccchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhccCCC
Q 042030 216 ALGMAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTMEWSRTGTFSIFWVICAAAVLFVAFLVPETK 292 (322)
Q Consensus 216 ~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~et~ 292 (322)
.....|....+++|.+|++.|+++.|+......++..++|.+.+.+.+..+...+.+.+.+.+++ .+....+||.+
T Consensus 102 ~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~~~~~~~i~~~~~~~~-~~~~~~l~~~~ 177 (393)
T PRK11195 102 AAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADPHAEAALAVCALIYLLA-ALFNLFIPRLG 177 (393)
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCCCCc
Confidence 34456777899999999999999999999999999999999999988855444444443333333 33445567643
No 180
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=97.98 E-value=0.00045 Score=58.01 Aligned_cols=65 Identities=17% Similarity=0.120 Sum_probs=52.2
Q ss_pred ccchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH-hhhcchhHHHHHHHHHHHHH
Q 042030 219 MAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTME-WSRTGTFSIFWVICAAAVLF 283 (322)
Q Consensus 219 ~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 283 (322)
..+....+..|.+|++.|+++.+..+....+|..++|.+.+.+.+ .++...+.+.+.+.++..+.
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (352)
T cd06174 104 LYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALL 169 (352)
T ss_pred ccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 456668899999999999999999999999999999999998887 55666666666555555443
No 181
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=97.97 E-value=0.00013 Score=66.34 Aligned_cols=74 Identities=8% Similarity=-0.046 Sum_probs=55.2
Q ss_pred cccchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH-h----------------------hhcchhHHHH
Q 042030 218 GMAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTME-W----------------------SRTGTFSIFW 274 (322)
Q Consensus 218 ~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-~----------------------~~~~~~~~~~ 274 (322)
...+....++.|.+|++.|+...|+.+....+|..+++.+.+.+.+ + .++..|++.+
T Consensus 188 ~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g 267 (633)
T TIGR00805 188 PIFPLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICG 267 (633)
T ss_pred cchhcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHH
Confidence 3456678999999999999999999999999999999999887775 2 1334466666
Q ss_pred HHHHHHHHHHHhhccCCC
Q 042030 275 VICAAAVLFVAFLVPETK 292 (322)
Q Consensus 275 ~~~~~~~~~~~~~~~et~ 292 (322)
++.++.++. +++.|++.
T Consensus 268 ~l~~l~~v~-l~~~p~~l 284 (633)
T TIGR00805 268 GVALLTSIP-FFFFPKAL 284 (633)
T ss_pred HHHHHHHHH-HHhCcccc
Confidence 666665554 34455543
No 182
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=97.97 E-value=0.00011 Score=61.94 Aligned_cols=152 Identities=17% Similarity=0.144 Sum_probs=82.5
Q ss_pred eeeeeecCCCCchhhHHHHHHHHHHHHHHHHHhhhhh------hhHHHHHHhhHHHHHHHHHhhccCCChHHHHhcCCHH
Q 042030 4 IYIAEITPKNIRGAFTATSQFLIVSGMSVMYLVGTIV------SWRALALIAAVPCLLQVVGLFFIPESPRWLAKIGKEK 77 (322)
Q Consensus 4 ~~i~e~~~~~~rg~~~~~~~~~~~~G~~l~~~~~~~~------~Wr~~f~~~~~~~~i~~~~~~~lpesp~~l~~~~~~~ 77 (322)
+|+--..|+++--++.+.......+|..++.+++..+ +.+.++++......+.++..+++|..++-+.-+.+.+
T Consensus 116 sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~fLP~~~~S~~f~r~~~ 195 (412)
T PF01770_consen 116 SYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIALFLPMPKRSLFFHRKPP 195 (412)
T ss_pred HHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCcccceeccCc
Confidence 4555566777778888888888888888888888665 5777777777666666777778887665222111111
Q ss_pred HHHHHHHHHhCCchhhhhhH-HHHHHhhhhcccccccchhhhcc---hhhHHHHHHHHHHHhhhhccchhhhHhcHHHHH
Q 042030 78 ELETTLQCLRGKTADISMES-ADIRDCTQTFEKDSKAGIFDLFQ---RRYAYSLSVGVGLMVMQPFVGSAAIAYYASYII 153 (322)
Q Consensus 78 ~a~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (322)
+... .++...++.+..++. ++.++..+..+...+..++.+++ +-+..+.++...+++....++++-+.+|...+.
T Consensus 196 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~y~~~~ll~WSlWWa~atcgy~qv~nYvQ~LW 274 (412)
T PF01770_consen 196 AEQD-ANESESDKMNESPESSSSTEKSPSTESSSRKSVLRLLWKDFKSCYSNPRLLLWSLWWAFATCGYYQVINYVQSLW 274 (412)
T ss_pred cccc-cccccccccccccccccccccCcccccchHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 1000 000000000000000 00000000111111112222222 233345566677888888888999999998888
Q ss_pred HHc
Q 042030 154 AAA 156 (322)
Q Consensus 154 ~~~ 156 (322)
++.
T Consensus 275 ~~v 277 (412)
T PF01770_consen 275 DTV 277 (412)
T ss_pred Hhc
Confidence 877
No 183
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=97.96 E-value=0.00061 Score=66.98 Aligned_cols=79 Identities=10% Similarity=-0.074 Sum_probs=58.0
Q ss_pred HHHhhcccchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH-hhhcchhHHHHHHHHHHHHHHHhhccCC
Q 042030 213 IAFALGMAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTME-WSRTGTFSIFWVICAAAVLFVAFLVPET 291 (322)
Q Consensus 213 ~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~et 291 (322)
+.......|...+++.+.+|.+.|+.++|+.++...+|..++|.+.+.+.+ .++...| +..++..+.+++....+|++
T Consensus 119 gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 197 (1140)
T PRK06814 119 GIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILV-ALLMGIAVLGWLASLFIPKT 197 (1140)
T ss_pred HHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHH-HHHHHHHHHHHHHHhhCCCC
Confidence 333444677889999999999999999999999999999999999999888 4444444 44444444444444556654
Q ss_pred C
Q 042030 292 K 292 (322)
Q Consensus 292 ~ 292 (322)
+
T Consensus 198 ~ 198 (1140)
T PRK06814 198 G 198 (1140)
T ss_pred C
Confidence 3
No 184
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=97.93 E-value=0.00081 Score=58.73 Aligned_cols=71 Identities=11% Similarity=0.026 Sum_probs=52.6
Q ss_pred hhhhhhccccCcccc--chhHHHHHHHHHHHHHHHHHHHHHHH--Hh--------------hhcchhHHHHHHHHHHHHH
Q 042030 222 LPSVIMAEIFPINIK--GSAGSLVILLHNCSNWIVTYTFHFTM--EW--------------SRTGTFSIFWVICAAAVLF 283 (322)
Q Consensus 222 ~~~~~~~e~~p~~~r--~~~~~~~~~~~~~g~~~~~~~~~~~~--~~--------------~~~~~~~~~~~~~~~~~~~ 283 (322)
...++++|..|++.| +.+.++.+....+|+.+++.+.+... +. +....|.+.+++.+++.++
T Consensus 134 p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~ 213 (477)
T TIGR01301 134 PCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYI 213 (477)
T ss_pred HHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHH
Confidence 347899999999876 56888888889999999988876542 11 2344577777777777777
Q ss_pred HHhhccCCC
Q 042030 284 VAFLVPETK 292 (322)
Q Consensus 284 ~~~~~~et~ 292 (322)
..+..||..
T Consensus 214 t~~~v~E~~ 222 (477)
T TIGR01301 214 ALSAVKENP 222 (477)
T ss_pred HeeeeeccC
Confidence 777888864
No 185
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=97.93 E-value=0.0014 Score=56.52 Aligned_cols=57 Identities=7% Similarity=-0.259 Sum_probs=43.3
Q ss_pred ccchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH-hhhcchhHHHHH
Q 042030 219 MAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTME-WSRTGTFSIFWV 275 (322)
Q Consensus 219 ~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~ 275 (322)
..+....+..|.+|++.|+++.++......+|..+++.+.+.+.+ .++...+.+.++
T Consensus 129 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~ 186 (399)
T PRK05122 129 AGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLIML 186 (399)
T ss_pred hcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 345556778899999999999999888888888899999888777 555544444333
No 186
>PRK03633 putative MFS family transporter protein; Provisional
Probab=97.92 E-value=0.00093 Score=57.18 Aligned_cols=118 Identities=8% Similarity=-0.152 Sum_probs=67.5
Q ss_pred chhhhHhcHHHHHHHcCCCchhHHHHHHHHH----------------HHH-HHHHHHHHHHHHHHHhccCCCCCCchhHH
Q 042030 141 GSAAIAYYASYIIAAADLSTDIGSISMAIIQ----------------AST-IWMGLSLTIIALAFGLQDTHLWNEATPVL 203 (322)
Q Consensus 141 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~----------------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (322)
.......+.|.+.++.|.+....+++.+... .+. .....+.++.+......... .+.+.
T Consensus 21 ~~~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~~~~~----~~~~~ 96 (381)
T PRK03633 21 AIAVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAGLGLM----VGFWS 96 (381)
T ss_pred hhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----ccHHH
Confidence 4556677889999988988776666555544 111 11111111111111111100 11233
Q ss_pred HHHHHHHHHHHHhhcccchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 042030 204 VYVGIMGFSIAFALGMAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTME 263 (322)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~ 263 (322)
.++...+.+.+.+ ...+.......+..|++.|+.+.+.......+|..++|.+.+.+.+
T Consensus 97 l~~~~~l~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~ 155 (381)
T PRK03633 97 WLAWRFVAGIGCA-MIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVST 155 (381)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 3333333232222 2334434556678888999999999999999999999999887765
No 187
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=97.92 E-value=0.0011 Score=57.39 Aligned_cols=64 Identities=11% Similarity=0.009 Sum_probs=48.1
Q ss_pred chhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH---------------------------hhhcchhHHH
Q 042030 221 GLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTME---------------------------WSRTGTFSIF 273 (322)
Q Consensus 221 ~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~---------------------------~~~~~~~~~~ 273 (322)
+....++.+..|++.|++..++.+....+|..++|.+.+.+.. .++..++.+.
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~ 192 (410)
T TIGR00885 113 TAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMII 192 (410)
T ss_pred hhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3346778888899999999999999999999999998876642 2356667777
Q ss_pred HHHHHHHHHHH
Q 042030 274 WVICAAAVLFV 284 (322)
Q Consensus 274 ~~~~~~~~~~~ 284 (322)
+++.++..++.
T Consensus 193 a~~~~~~~~~~ 203 (410)
T TIGR00885 193 GAVVLAVALLI 203 (410)
T ss_pred HHHHHHHHHHH
Confidence 77666554433
No 188
>PRK15011 sugar efflux transporter B; Provisional
Probab=97.91 E-value=0.00098 Score=57.31 Aligned_cols=76 Identities=11% Similarity=-0.103 Sum_probs=54.8
Q ss_pred cccchhhhhhccccCccccch--hHHHHHHHHHHHHHHHHHHHHHHHH-hhhcchhHHHHHHHHHHHHHHHhhccCCCC
Q 042030 218 GMAGLPSVIMAEIFPINIKGS--AGSLVILLHNCSNWIVTYTFHFTME-WSRTGTFSIFWVICAAAVLFVAFLVPETKG 293 (322)
Q Consensus 218 ~~~~~~~~~~~e~~p~~~r~~--~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~et~~ 293 (322)
...+....+..|..|++.|.. ..+..+....+|..++|.+.+.+.+ .++...|...+...++.++..+++.||.++
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~ 199 (393)
T PRK15011 121 TANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWLFLPSMRK 199 (393)
T ss_pred hhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhcCccCC
Confidence 345555666677666554532 3366777888999999999999887 688888888887777777766777787643
No 189
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=97.88 E-value=0.00078 Score=57.37 Aligned_cols=74 Identities=9% Similarity=-0.079 Sum_probs=55.4
Q ss_pred ccchhhhhhccccCccccchh--HHHHHHHHHHHHHHHHHHHHHHHH-hhhcchhHHHHHHHHHHHHHHHhhccCCC
Q 042030 219 MAGLPSVIMAEIFPINIKGSA--GSLVILLHNCSNWIVTYTFHFTME-WSRTGTFSIFWVICAAAVLFVAFLVPETK 292 (322)
Q Consensus 219 ~~~~~~~~~~e~~p~~~r~~~--~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~et~ 292 (322)
..|....+..|..|++.|+.+ .+.......+|..++|.+.+.+.+ .++...+.+.+.+.++..++.++++||.+
T Consensus 104 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 180 (375)
T TIGR00899 104 ANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVWLFLPSYP 180 (375)
T ss_pred hHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 445556677788787777654 566777778999999999988877 67778888888877777776666677754
No 190
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=97.86 E-value=0.0015 Score=56.43 Aligned_cols=83 Identities=10% Similarity=0.080 Sum_probs=54.8
Q ss_pred HHHHHHHHHHhhcccchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcch--hHHHHHHHHHHHHH
Q 042030 206 VGIMGFSIAFALGMAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTMEWSRTGT--FSIFWVICAAAVLF 283 (322)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 283 (322)
+.-++++.+-+..+ ..+.++...+|++.|+++.|..+....+|.++++.+.+.+...++... .-.+...+.+.+++
T Consensus 120 i~R~llGvaEA~~~--A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~s~gWr~y~~Ln~Isl~s~~~a~~ 197 (511)
T TIGR00806 120 LMEVFYSVTMAARI--AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLVTLGWISYSTLNIISLVFMTFSVF 197 (511)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHH
Confidence 33334444433333 558899999999999999999999999999999999998555544332 22233333333444
Q ss_pred HHhhccC
Q 042030 284 VAFLVPE 290 (322)
Q Consensus 284 ~~~~~~e 290 (322)
..+++|.
T Consensus 198 ~a~~LP~ 204 (511)
T TIGR00806 198 LALFLKR 204 (511)
T ss_pred HHHhCCC
Confidence 4455663
No 191
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=97.86 E-value=3.4e-05 Score=66.27 Aligned_cols=60 Identities=5% Similarity=0.007 Sum_probs=44.4
Q ss_pred hhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH-hhhcchhHHHHHHHHHHHH
Q 042030 223 PSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTME-WSRTGTFSIFWVICAAAVL 282 (322)
Q Consensus 223 ~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 282 (322)
..++-+|+..++.+++..++....+..+..++|.+...... .+......+.++..++...
T Consensus 409 ~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g~~~v~~~~~~~~l~~~~ 469 (488)
T KOG2325|consen 409 LDTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTLSGPRPVWIILLCLLLVVAA 469 (488)
T ss_pred HHHHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHHhcCccHHHHHHHHHHHHHHH
Confidence 46778899999999999999999999999999988887777 5555444444444444333
No 192
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=97.85 E-value=0.00036 Score=61.11 Aligned_cols=83 Identities=14% Similarity=0.016 Sum_probs=69.2
Q ss_pred HHHHHhhcccchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH-------hhhcchhHHHHHHHHHHHHH
Q 042030 211 FSIAFALGMAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTME-------WSRTGTFSIFWVICAAAVLF 283 (322)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~ 283 (322)
+.+.+-.+.+|....+++.-|..+.|+.-+|+-++...+|+++++.+...+.+ .++.+.|++-+++.++.+++
T Consensus 143 llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~ 222 (495)
T KOG2533|consen 143 LLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIV 222 (495)
T ss_pred HHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHhe
Confidence 34444555677778899999999999999999999999999999999887532 67889999999999999999
Q ss_pred HHhhccCCCC
Q 042030 284 VAFLVPETKG 293 (322)
Q Consensus 284 ~~~~~~et~~ 293 (322)
.++++|+...
T Consensus 223 ~f~~lp~~P~ 232 (495)
T KOG2533|consen 223 VFFFLPDNPS 232 (495)
T ss_pred EEEEecCChh
Confidence 9888887543
No 193
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=97.82 E-value=0.0026 Score=54.60 Aligned_cols=72 Identities=11% Similarity=-0.013 Sum_probs=51.9
Q ss_pred ccchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH-hhhcchhHHHHHHHHHHHHHHHhhccC
Q 042030 219 MAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTME-WSRTGTFSIFWVICAAAVLFVAFLVPE 290 (322)
Q Consensus 219 ~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e 290 (322)
..+....+..|..+.+.++...+.......+|..+++...+.+.+ .++...|.+.+++.++..+..+...|+
T Consensus 114 ~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~~~~~ 186 (390)
T TIGR02718 114 QDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLWLKDR 186 (390)
T ss_pred HHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 344455567777777777777777777678888888888777777 688888888888877766655444444
No 194
>PRK12382 putative transporter; Provisional
Probab=97.81 E-value=0.0017 Score=55.83 Aligned_cols=49 Identities=4% Similarity=-0.285 Sum_probs=39.6
Q ss_pred cchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH-hhhcc
Q 042030 220 AGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTME-WSRTG 268 (322)
Q Consensus 220 ~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~ 268 (322)
.+....+..|.+|++.|+++.+........+..++|.+.+.+.+ .++..
T Consensus 130 ~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~ 179 (392)
T PRK12382 130 LTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAA 179 (392)
T ss_pred HHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhccChHH
Confidence 34445677899999999999999988888999999999888777 55443
No 195
>PRK09528 lacY galactoside permease; Reviewed
Probab=97.77 E-value=0.00064 Score=59.01 Aligned_cols=57 Identities=7% Similarity=-0.013 Sum_probs=42.0
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhccC
Q 042030 234 NIKGSAGSLVILLHNCSNWIVTYTFHFTMEWSRTGTFSIFWVICAAAVLFVAFLVPE 290 (322)
Q Consensus 234 ~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 290 (322)
+.++...|.......+|..++|.+.+.+.+.++...|...++++++..++.+...+|
T Consensus 137 ~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 193 (420)
T PRK09528 137 RRSGFEYGRARMWGSLGWALCAFIAGILFNINPQINFWLGSGSALILLVLLFFAKPD 193 (420)
T ss_pred hhccccchhhHHhhhHHHHHHHHHHHHHHhcCchHhHHHHHHHHHHHHHHHhccccc
Confidence 345677788888889999999999998887667777777776666665554444444
No 196
>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]
Probab=97.73 E-value=0.00059 Score=55.63 Aligned_cols=268 Identities=13% Similarity=0.099 Sum_probs=139.7
Q ss_pred ceeeeeecCCCCchhhHHHHHHHHHHHHHHHHHhhhhh------hhHHHHHHhhHHHHHHHHHhhccCCChHHHHhcCCH
Q 042030 3 PIYIAEITPKNIRGAFTATSQFLIVSGMSVMYLVGTIV------SWRALALIAAVPCLLQVVGLFFIPESPRWLAKIGKE 76 (322)
Q Consensus 3 ~~~i~e~~~~~~rg~~~~~~~~~~~~G~~l~~~~~~~~------~Wr~~f~~~~~~~~i~~~~~~~lpesp~~l~~~~~~ 76 (322)
++|+-+..+|+++-++.+..-...-.|...|..++..+ +.+.+-.+......+......++|..+|-+..+.++
T Consensus 116 ysYIYs~Vd~~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~ISL~~~~ia~~~A~fLP~v~rSl~f~~~~ 195 (433)
T KOG3810|consen 116 YSYIYSKVDPEMYKRVTGYCRAAFLVGKFVGSVLAQLLVSLETLSYTTLNYISLAEVTIAVLLALFLPRVKRSLYFHRLE 195 (433)
T ss_pred hheeeeecCHHHHHHHHHHhHHHHHHHhHHHhHHHHHHhhhcccchhhhchhhHHHHHHHHHHHhhCCCCchhhhhhccc
Confidence 67888999999999999999988888888888888665 455555665555556666677888776644333333
Q ss_pred HHHHHHHHHHhCCchhhhhhHHHHHHhhhhcccccccchhhhcchhhHHHHHHHHHHHhhhhccchhhhHhcHHHHHHHc
Q 042030 77 KELETTLQCLRGKTADISMESADIRDCTQTFEKDSKAGIFDLFQRRYAYSLSVGVGLMVMQPFVGSAAIAYYASYIIAAA 156 (322)
Q Consensus 77 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (322)
++ +...+....+. ..+..+.. + .....+..-++.-+..+.+.-..+++....++++-+.+|...+-+..
T Consensus 196 ~~--~~v~~~e~~~~--~~~~~~~l---~----~~~~~l~~~l~~~y~np~ll~WSlWwAl~scg~~QV~nY~Q~LW~~~ 264 (433)
T KOG3810|consen 196 DK--ISVGDLEEMNP--QASYMSYL---R----GAFVLLWRDLQECYSNPRLLKWSLWWALASCGYYQVTNYTQILWKEV 264 (433)
T ss_pred cc--ceeccchhcCc--cchhhHHH---H----HHHHHHHHHHHHHhcCchhhhhHHHHHHhhchhHHHHHHHHHHHHhh
Confidence 31 11111111100 00000000 0 00001111111223344555567778888888998888888877765
Q ss_pred CCCc-h-------hHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHhccCCCCCCchhHHHHHHHHHHHHHH
Q 042030 157 DLST-D-------IGSISMAIIQ-------------ASTIWMGLSLTIIALAFGLQDTHLWNEATPVLVYVGIMGFSIAF 215 (322)
Q Consensus 157 g~~~-~-------~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (322)
.-++ . ....+.+.+. .+-..+.+..+.-+...+.-... ...|...+...++...+
T Consensus 265 ~~~~~~vyNG~veAv~tlLGa~~~~~~g~l~i~w~r~g~~ll~~~s~~~agllf~m~~t----~~Iw~~Ya~yvlfr~~y 340 (433)
T KOG3810|consen 265 APNPANVYNGAVEAVSTLLGAIAALAAGYLNINWNRWGDLLLAVGSAVQAGLLFIMAQT----QHIWVCYAGYVLFRVIY 340 (433)
T ss_pred CCCchhhhcCHHHHHHHHHHHHHHHHHHheeeccchhhHHHHHHHHHHhhhhhhhhhcc----cceehhhhhHHHHHhhH
Confidence 3111 1 1111111111 33333333333333333222211 33455556666555555
Q ss_pred hhcccchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHH----HHH-----hhhcchhHHHHHHHHHHHHHHHh
Q 042030 216 ALGMAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHF----TME-----WSRTGTFSIFWVICAAAVLFVAF 286 (322)
Q Consensus 216 ~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~----~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 286 (322)
....... ..-+++....+.-|..+|+..+++-+-..+-..+.-- -.+ .-+..-|++++++.++.....+.
T Consensus 341 ~l~itiA-~~~iA~nL~~e~~gLvFGiNTFvAl~lQsilT~iVvd~~g~~L~ir~Q~~~Y~~Yf~v~~~i~~~~~~~~~~ 419 (433)
T KOG3810|consen 341 QLTITIA-TFQIARNLSSELFGLVFGINTFVALILQSILTLIVVDDRGLGLDIRTQFVVYSSYFIVLGVIFLIGFGIEYL 419 (433)
T ss_pred hhhhhHH-HHHHHHhhhhhhheeeeehHHHHHHHHHHhheEEEEcccccCCCcceeEEEEeehHHHHHHHHHHHHHHHHH
Confidence 5543333 3334455555566788888877766655554444311 000 11234477777777777665433
No 197
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=97.73 E-value=0.0031 Score=54.25 Aligned_cols=132 Identities=9% Similarity=0.059 Sum_probs=74.1
Q ss_pred hhhhHhcHHHHHHHcCCCchhHHHHHHHHH----------------HH-HHHHHHHHHHHHHHHHhccCCCCCCchhHHH
Q 042030 142 SAAIAYYASYIIAAADLSTDIGSISMAIIQ----------------AS-TIWMGLSLTIIALAFGLQDTHLWNEATPVLV 204 (322)
Q Consensus 142 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~----------------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (322)
........|.+.++.|.+....+...+... .+ ...+..+..+.++........ .+.+..
T Consensus 25 ~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a----~~~~~l 100 (393)
T PRK09705 25 LTSVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELY----PQSALL 100 (393)
T ss_pred hhccchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHC----cchHHH
Confidence 355667788988888998876666665544 00 011111111111111111110 112233
Q ss_pred HHHHHHHHHHHhhcccchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHh--hhcchhHHHHHHHHH
Q 042030 205 YVGIMGFSIAFALGMAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTMEW--SRTGTFSIFWVICAA 279 (322)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 279 (322)
++.-.+.+.+.+. ..+....++.+.+| +.|+.+.+........|..+++.+.+.+.+. ++...+..+++..++
T Consensus 101 l~~r~l~Gig~~~-~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~ 175 (393)
T PRK09705 101 LSSALLGGVGIGI-IQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALPAVV 175 (393)
T ss_pred HHHHHHHHhHHHH-HhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 3333333333332 33444667888887 7799999999988889999999998887773 455555555444433
No 198
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=97.73 E-value=0.002 Score=55.12 Aligned_cols=126 Identities=13% Similarity=0.112 Sum_probs=73.4
Q ss_pred hhhhHhcHHHHHHHcCCCchhHHHHHHHHH----------------HH-----HHHHHHHHHHHHHHHHhccCCCCCCch
Q 042030 142 SAAIAYYASYIIAAADLSTDIGSISMAIIQ----------------AS-----TIWMGLSLTIIALAFGLQDTHLWNEAT 200 (322)
Q Consensus 142 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~----------------~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (322)
+....-+.|.++++.|.+....+.+.+... .+ ......+..+......... ..
T Consensus 20 ~~~~~p~l~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~ 93 (382)
T TIGR00902 20 YGIFLPFFPAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAAAFSAGA------HN 93 (382)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHhh------hh
Confidence 344556678888889998886666655433 11 1111112211222111111 11
Q ss_pred hHHHHHHHHHHHHHHhhcccchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH-hhhcchhHHHHHH
Q 042030 201 PVLVYVGIMGFSIAFALGMAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTME-WSRTGTFSIFWVI 276 (322)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~ 276 (322)
.+..++...+...+.+. ..|....+..+. .+.|+...|.....+.+|..++|.+.+.+.+ .++...+.+.+..
T Consensus 94 ~~~l~~~~~l~~~~~~~-~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~ 167 (382)
T TIGR00902 94 AWLLFIAIGLFALFFSA-GMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAILTAG 167 (382)
T ss_pred HHHHHHHHHHHHHHHcc-chhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHH
Confidence 23333333333333333 455656665542 4678999999999999999999999999888 6777776665544
No 199
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.70 E-value=9.5e-05 Score=61.28 Aligned_cols=76 Identities=11% Similarity=0.111 Sum_probs=65.0
Q ss_pred cchhhhhhccccCccc-cchhHHHHHHHHHHHHHHHHHHHHHHHH-hhhcchhHHHHHHHHHHHHHHHhhccCCCCCC
Q 042030 220 AGLPSVIMAEIFPINI-KGSAGSLVILLHNCSNWIVTYTFHFTME-WSRTGTFSIFWVICAAAVLFVAFLVPETKGRH 295 (322)
Q Consensus 220 ~~~~~~~~~e~~p~~~-r~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~et~~~~ 295 (322)
......++++.||.+. |++++|+.-.+-.+|-.++|.+.+.+++ .|...+|++.++++++-..+-++.++.++.++
T Consensus 177 ~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~~~ 254 (464)
T KOG3764|consen 177 DTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTEMDP 254 (464)
T ss_pred HhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCccccCc
Confidence 3444778999999876 6999999999999999999999999999 88999999999999999888777776655443
No 200
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=97.68 E-value=0.0027 Score=62.55 Aligned_cols=47 Identities=17% Similarity=0.034 Sum_probs=41.5
Q ss_pred cccchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042030 218 GMAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTMEW 264 (322)
Q Consensus 218 ~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 264 (322)
...+....+++|.+|++.|+.++|+......+|.++++.+.+.+.+.
T Consensus 119 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~ 165 (1146)
T PRK08633 119 IYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFES 165 (1146)
T ss_pred hhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35566688999999999999999999999999999999999887764
No 201
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=97.67 E-value=4.4e-05 Score=64.43 Aligned_cols=82 Identities=11% Similarity=0.062 Sum_probs=68.1
Q ss_pred hhcccchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH--hhhcchhHHHHHHHHHHHHHHHhhccCCCC
Q 042030 216 ALGMAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTME--WSRTGTFSIFWVICAAAVLFVAFLVPETKG 293 (322)
Q Consensus 216 ~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~et~~ 293 (322)
-.+..|+...+++|+||...|++..++.+.....|.+++-.+...+.+ ..|.+.|...+++.++.+++..++.+|..+
T Consensus 135 eAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~r 214 (493)
T KOG1330|consen 135 EASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVREPER 214 (493)
T ss_pred hhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhccCccc
Confidence 345778889999999999999999999999999998888777666665 337889999999999999988888888765
Q ss_pred CChh
Q 042030 294 RHSK 297 (322)
Q Consensus 294 ~~~~ 297 (322)
+..+
T Consensus 215 ga~~ 218 (493)
T KOG1330|consen 215 GARD 218 (493)
T ss_pred cccc
Confidence 4433
No 202
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=97.67 E-value=0.0014 Score=58.43 Aligned_cols=81 Identities=15% Similarity=0.304 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHhhcccchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH-hhhcchhHHHHHHHHHHH
Q 042030 203 LVYVGIMGFSIAFALGMAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTME-WSRTGTFSIFWVICAAAV 281 (322)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 281 (322)
..+.+..+.+.+ .+...+....++|+.|.+.|..+.++.....-.....++.+...+.. .+|.+.+.+.+....++.
T Consensus 133 ~~iag~~l~Gvg--aG~~~~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~ 210 (599)
T PF06609_consen 133 TFIAGMVLYGVG--AGVQELAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIAL 210 (599)
T ss_pred HHHHHHHHHHHh--hHHHHHHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHH
Confidence 333444443333 34444456678999999999888877665544444456666655444 567777777776666655
Q ss_pred HHHH
Q 042030 282 LFVA 285 (322)
Q Consensus 282 ~~~~ 285 (322)
+..+
T Consensus 211 vl~~ 214 (599)
T PF06609_consen 211 VLIF 214 (599)
T ss_pred HHHH
Confidence 4433
No 203
>TIGR00898 2A0119 cation transport protein.
Probab=97.66 E-value=0.0011 Score=59.12 Aligned_cols=71 Identities=15% Similarity=0.185 Sum_probs=52.9
Q ss_pred cccchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhccCC
Q 042030 218 GMAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTMEWSRTGTFSIFWVICAAAVLFVAFLVPET 291 (322)
Q Consensus 218 ~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~et 291 (322)
+..+....++.|.+|++.|+.+.++......+|.++++.+...+.+ +...+.+.++..++..+.. +++||+
T Consensus 196 ~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~--wr~~~~~~~i~~~~~~~~~-~~~~es 266 (505)
T TIGR00898 196 GIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPD--WRWLQLAVSLPTFLFFLLS-WFVPES 266 (505)
T ss_pred chHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHHHH-HhcCCC
Confidence 3466778899999999999999999888888888888877665544 5556666666665555544 567875
No 204
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=97.65 E-value=0.0033 Score=53.81 Aligned_cols=140 Identities=14% Similarity=0.062 Sum_probs=77.7
Q ss_pred hhhhHhcHHHHHHHcCCCchhHHHHHHHHH----------------HH-----HHHHHHHHHHHHHHHHhccCCCCCCch
Q 042030 142 SAAIAYYASYIIAAADLSTDIGSISMAIIQ----------------AS-----TIWMGLSLTIIALAFGLQDTHLWNEAT 200 (322)
Q Consensus 142 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~----------------~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (322)
.....-++|.++++.|.+....+...++.. .+ .....+...+......... .+
T Consensus 20 ~g~~~p~l~~~l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~------~~ 93 (382)
T PRK11128 20 YGVFLPFWSVWLKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLFAVAFWFGA------HS 93 (382)
T ss_pred HHHHhhhHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHhc------cc
Confidence 344556777888888988886666665544 11 0111111111111111111 11
Q ss_pred hHHHHHHHHHHHHHHhhcccchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH-hhhcchhHHHHHHHHH
Q 042030 201 PVLVYVGIMGFSIAFALGMAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTME-WSRTGTFSIFWVICAA 279 (322)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 279 (322)
.+..++...+...+ .....+....+..+. .+.|+.+.+.....+.+|..++|.+.+.+.+ .++...|+..++..++
T Consensus 94 ~~~l~i~~~l~g~~-~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~ 170 (382)
T PRK11128 94 FWLLFVAIGLFNLF-FSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWILTAGVAS 170 (382)
T ss_pred HHHHHHHHHHHHHH-HcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHH
Confidence 23333333322322 233455555555554 3457888888888899999999999999988 6777777766654444
Q ss_pred HHHHHHhhccCC
Q 042030 280 AVLFVAFLVPET 291 (322)
Q Consensus 280 ~~~~~~~~~~et 291 (322)
..+ .....||.
T Consensus 171 ~~~-~~~~~~~~ 181 (382)
T PRK11128 171 MLL-GQLLRPTI 181 (382)
T ss_pred HHH-HHHccCCC
Confidence 333 33344554
No 205
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=97.62 E-value=0.0038 Score=54.46 Aligned_cols=72 Identities=19% Similarity=0.182 Sum_probs=48.0
Q ss_pred ccchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHH---------HhhhcchhHHHHHHHHHHHHHHHhhcc
Q 042030 219 MAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTM---------EWSRTGTFSIFWVICAAAVLFVAFLVP 289 (322)
Q Consensus 219 ~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (322)
..+....+++|.+|++.|+...++.......|..+++.+...+. .+++...|.+.++..++. .+....+|
T Consensus 141 ~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~-~~~~~~~~ 219 (432)
T PRK10406 141 EYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVA-LWLRRQLD 219 (432)
T ss_pred hHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHH-HHHHhcCC
Confidence 45667899999999999999988877766677777766544332 256677777655544443 22333456
Q ss_pred CC
Q 042030 290 ET 291 (322)
Q Consensus 290 et 291 (322)
|+
T Consensus 220 e~ 221 (432)
T PRK10406 220 ET 221 (432)
T ss_pred CC
Confidence 64
No 206
>PRK15075 citrate-proton symporter; Provisional
Probab=97.62 E-value=0.0028 Score=55.29 Aligned_cols=53 Identities=23% Similarity=0.101 Sum_probs=39.9
Q ss_pred cchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHH--------H-hhhcchhHH
Q 042030 220 AGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTM--------E-WSRTGTFSI 272 (322)
Q Consensus 220 ~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~--------~-~~~~~~~~~ 272 (322)
.+....+++|.+|++.|+.+.++.....++|..+++.+.+.+. + .++...|.+
T Consensus 135 ~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~ 196 (434)
T PRK15075 135 LGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLI 196 (434)
T ss_pred HHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHH
Confidence 3445688999999999999999998888888777777666542 2 455556654
No 207
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=97.61 E-value=0.0002 Score=59.14 Aligned_cols=51 Identities=10% Similarity=-0.020 Sum_probs=44.0
Q ss_pred HHHhhcccchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 042030 213 IAFALGMAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTME 263 (322)
Q Consensus 213 ~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~ 263 (322)
.+..-+...+..++++|+++++.|+.+++.+.....+|.++||.+.+++..
T Consensus 131 ~Gi~kgnl~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 131 GGIFKGNLSVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred hhhccCchHHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence 344445556678999999999999999999999999999999999998876
No 208
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=97.57 E-value=9.3e-05 Score=53.05 Aligned_cols=64 Identities=28% Similarity=0.384 Sum_probs=51.7
Q ss_pred ceeeeeecCCCCchhhHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHhhHHHHHHHHH-hhccCCC
Q 042030 3 PIYIAEITPKNIRGAFTATSQFLIVSGMSVMYLVGTIV----SWRALALIAAVPCLLQVVG-LFFIPES 66 (322)
Q Consensus 3 ~~~i~e~~~~~~rg~~~~~~~~~~~~G~~l~~~~~~~~----~Wr~~f~~~~~~~~i~~~~-~~~lpes 66 (322)
..++.|..|+++|++..+..+....+|..+++.+...+ +||+.+++.++..++..+. .++.||+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (141)
T TIGR00880 73 AALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPET 141 (141)
T ss_pred HHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 35678999999999999999999999999988887665 8999999888777766544 4556664
No 209
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=97.52 E-value=0.0061 Score=52.50 Aligned_cols=84 Identities=11% Similarity=0.034 Sum_probs=53.1
Q ss_pred HHHHHHHHHHhhcccchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHH-------HHHHhhhcchhHHHHHHHH
Q 042030 206 VGIMGFSIAFALGMAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFH-------FTMEWSRTGTFSIFWVICA 278 (322)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~ 278 (322)
+...++....-....|+...+++.+.|+...+..++.-......+..++..+.+ ..........|...+.+.+
T Consensus 398 il~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~~~~~~~~~~~~~~~~~F~~~g~v~i 477 (498)
T COG3104 398 VLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGLTAVTDPAYTAFIEGRVFGTIGVVAI 477 (498)
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecccccccchhhhhhhhhhhHHHHHHHHH
Confidence 333344445566678888889999999988888888766655566666555554 2222344455676777666
Q ss_pred HHHHHHHhhcc
Q 042030 279 AAVLFVAFLVP 289 (322)
Q Consensus 279 ~~~~~~~~~~~ 289 (322)
+..+......|
T Consensus 478 ~~~~~~~~~~~ 488 (498)
T COG3104 478 VIGILLLLLSP 488 (498)
T ss_pred HHHHHHHHhhH
Confidence 66665554444
No 210
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=97.49 E-value=0.0024 Score=55.22 Aligned_cols=91 Identities=9% Similarity=-0.025 Sum_probs=59.8
Q ss_pred hHHHHHHHHHHHHHHhhcccchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHh--------------hh
Q 042030 201 PVLVYVGIMGFSIAFALGMAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTMEW--------------SR 266 (322)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~--------------~~ 266 (322)
.++.+++-+ ..+++.+...+.-.|+++..-.+.|.++++......-+|.++||.+...+... .+
T Consensus 130 ~y~mL~~R~--l~Gvg~~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~Y 207 (488)
T KOG2325|consen 130 KYLMLVARI--LTGVGVGNFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMY 207 (488)
T ss_pred HHHHHHHHH--HcCcCcccHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEec
Confidence 344444443 34445555566788999977778888988887776667777777665443321 12
Q ss_pred cchhHHHHHHHHHHHHHHHhhccCCCC
Q 042030 267 TGTFSIFWVICAAAVLFVAFLVPETKG 293 (322)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~et~~ 293 (322)
..+-++.+.+.++..++.+.+.+|..+
T Consensus 208 Tap~w~m~i~~i~~~v~i~~~f~E~~~ 234 (488)
T KOG2325|consen 208 TAPAWLMAILWIIYIVIILFFFKEVYR 234 (488)
T ss_pred chHHHHHHHHHHHHHHHHHhheeeccc
Confidence 345677777788888877777777543
No 211
>PRK11462 putative transporter; Provisional
Probab=97.48 E-value=0.013 Score=51.64 Aligned_cols=81 Identities=12% Similarity=0.090 Sum_probs=49.4
Q ss_pred HHHHHHhhcccchhhhhhccccC-ccccchhHHHHHHHHHHHHHHHHHHHHHHHH-hh-------hcchhHHHHHHHHHH
Q 042030 210 GFSIAFALGMAGLPSVIMAEIFP-INIKGSAGSLVILLHNCSNWIVTYTFHFTME-WS-------RTGTFSIFWVICAAA 280 (322)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~e~~p-~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~-------~~~~~~~~~~~~~~~ 280 (322)
++..++.....|- .++.+|+.+ ++.|.+..+.-...+.+|+.+++.+..++.. .+ +.....+++++.+++
T Consensus 118 ~~~~~~t~~~ipy-~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~ 196 (460)
T PRK11462 118 LLTLLYTVVNIPY-CALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMM 196 (460)
T ss_pred HHHHHHHHHhccH-HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHH
Confidence 3444554443333 667788776 7889999999999999988888777655554 22 222334444444444
Q ss_pred HHHHHhhccCC
Q 042030 281 VLFVAFLVPET 291 (322)
Q Consensus 281 ~~~~~~~~~et 291 (322)
..+.+...+|.
T Consensus 197 ~~i~~~~~kE~ 207 (460)
T PRK11462 197 LAFCFFTTKER 207 (460)
T ss_pred HHHHHhcceec
Confidence 44444445554
No 212
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=97.45 E-value=0.0044 Score=54.16 Aligned_cols=85 Identities=11% Similarity=0.042 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHhhcccchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH--hhhcchhHHHHHHHHHHHH
Q 042030 205 YVGIMGFSIAFALGMAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTME--WSRTGTFSIFWVICAAAVL 282 (322)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 282 (322)
++.-++.+.+.+. ..|....+.+.-.|++.|++..++......+|.+++-.+.+.+-+ .|+...|.+.++++++..+
T Consensus 132 ~~~R~lqGl~~g~-~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~ 210 (466)
T KOG2532|consen 132 LVLRFLQGLGQGV-LFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFI 210 (466)
T ss_pred HHHHHHhHHHHhH-HHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHH
Confidence 3444444444433 456668889999999999999999999999999999999998887 6889999999999988887
Q ss_pred HHHhhccC
Q 042030 283 FVAFLVPE 290 (322)
Q Consensus 283 ~~~~~~~e 290 (322)
+.+.+..|
T Consensus 211 ~w~~~~~d 218 (466)
T KOG2532|consen 211 LWFLFYSD 218 (466)
T ss_pred HHHHHhcC
Confidence 66665544
No 213
>PRK09669 putative symporter YagG; Provisional
Probab=97.44 E-value=0.0088 Score=52.38 Aligned_cols=81 Identities=11% Similarity=0.009 Sum_probs=47.9
Q ss_pred HHHHHHhhcccchhhhhhcccc-CccccchhHHHHHHHHHHHHHHHHHHHHHHHH-h-------hhcchhHHHHHHHHHH
Q 042030 210 GFSIAFALGMAGLPSVIMAEIF-PINIKGSAGSLVILLHNCSNWIVTYTFHFTME-W-------SRTGTFSIFWVICAAA 280 (322)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~e~~-p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-~-------~~~~~~~~~~~~~~~~ 280 (322)
++..+++....| ..++.+|+. +++.|....+.......+|+.+++.+..++.. . ++...+.+.++++.+.
T Consensus 118 l~~~~~t~~~ip-~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~ 196 (444)
T PRK09669 118 LLSLVYTAINVP-YCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVL 196 (444)
T ss_pred HHHHHHHhhcch-HHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHH
Confidence 334444433233 367788877 45778888888888888888888776554443 2 2222444455555555
Q ss_pred HHHHHhhccCC
Q 042030 281 VLFVAFLVPET 291 (322)
Q Consensus 281 ~~~~~~~~~et 291 (322)
.+..++..+|.
T Consensus 197 ~~~~~~~~~e~ 207 (444)
T PRK09669 197 FFCCFFMTKER 207 (444)
T ss_pred HHHHhCCeEEe
Confidence 44455555554
No 214
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=97.43 E-value=0.0074 Score=52.63 Aligned_cols=69 Identities=9% Similarity=-0.007 Sum_probs=48.1
Q ss_pred hhhhcccc-CccccchhHHHHHHHHHHHHHHHHHHHHHHHH--------hhhcchhHHHHHHHHHHHHHHHhhccCCC
Q 042030 224 SVIMAEIF-PINIKGSAGSLVILLHNCSNWIVTYTFHFTME--------WSRTGTFSIFWVICAAAVLFVAFLVPETK 292 (322)
Q Consensus 224 ~~~~~e~~-p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~et~ 292 (322)
.++.+|.. +++.|+...+.......+|+.+++.+.+.+.. .++...+.+.+++.++..++.+...||++
T Consensus 121 ~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~ 198 (437)
T TIGR00792 121 WSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLIICFFGTKERY 198 (437)
T ss_pred hhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHHHHcCCEecC
Confidence 56777876 56789999999888888888877776655543 23444566666666666666666677754
No 215
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=97.32 E-value=0.0046 Score=54.71 Aligned_cols=76 Identities=14% Similarity=0.200 Sum_probs=56.8
Q ss_pred HHHHhhcccchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH-hhhcchhHHHHHHHHHHHHHHHhhcc
Q 042030 212 SIAFALGMAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTME-WSRTGTFSIFWVICAAAVLFVAFLVP 289 (322)
Q Consensus 212 ~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (322)
+.++++.+.|. .+.++ .+-.+.|+.+.|++.....+|.++-|.+...+.+ .++...++.++.+.+-..+....+.|
T Consensus 146 G~G~~~~~~pa-iviv~-~YF~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp 222 (509)
T KOG2504|consen 146 GLGLGLIYLPA-VVILG-TYFEKKRALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRP 222 (509)
T ss_pred hccchhhhcch-hhhhh-hHhHHHHHHHHhhhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCC
Confidence 33444434444 34444 4556889999999999999999998888888888 89999999999988777776666655
No 216
>PRK10133 L-fucose transporter; Provisional
Probab=97.29 E-value=0.028 Score=49.16 Aligned_cols=117 Identities=10% Similarity=-0.034 Sum_probs=62.8
Q ss_pred hhhhHhcHHHHHHHcCCCchhHHHHHHHHH----------------HHHH-HHHHHHHHHHHHH--HhccCCCCCCchhH
Q 042030 142 SAAIAYYASYIIAAADLSTDIGSISMAIIQ----------------ASTI-WMGLSLTIIALAF--GLQDTHLWNEATPV 202 (322)
Q Consensus 142 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~----------------~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 202 (322)
........|.+-++.|.+....+....... .+.. .+..+..+..... ...... ..+..
T Consensus 42 ~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~---a~~~~ 118 (438)
T PRK10133 42 NNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAE---IMNYT 118 (438)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHh---cCCHH
Confidence 456677788887778988876555554433 1110 1111111111111 100000 01123
Q ss_pred HHHHHHHHHHHHHhhcccchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 042030 203 LVYVGIMGFSIAFALGMAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTM 262 (322)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~ 262 (322)
..+...++.+.+.+. ..+....++.|..|.+.|....+.......+|..+++.+...+.
T Consensus 119 ~ll~~r~l~G~g~g~-~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~ 177 (438)
T PRK10133 119 LFLVGLFIIAAGLGC-LETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_pred HHHHHHHHHHHHHHH-HHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334443444333 23444666778777776666788889999999999998876543
No 217
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=97.29 E-value=0.013 Score=51.08 Aligned_cols=88 Identities=20% Similarity=0.203 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHhhcccchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHH-HHHHH--hhhcchhHHHHHHHH
Q 042030 202 VLVYVGIMGFSIAFALGMAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTF-HFTME--WSRTGTFSIFWVICA 278 (322)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~ 278 (322)
...+++-++.+...+... .....|+.|+.|.+.||....+......+|..++..+. +.+.. ..|...+. +..+..
T Consensus 117 e~li~GR~i~Gl~~gl~~-~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~-~~~i~~ 194 (485)
T KOG0569|consen 117 EMLILGRLIVGLACGLST-GLVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLA-FPLIPA 194 (485)
T ss_pred HHHHHHHHHHHHHhHHHH-HHHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHH-HHHHHH
Confidence 344444444443433332 33467899999999999999998888888888885443 33333 12222222 233333
Q ss_pred HHHHHHHhhccCC
Q 042030 279 AAVLFVAFLVPET 291 (322)
Q Consensus 279 ~~~~~~~~~~~et 291 (322)
+..++...+.||+
T Consensus 195 ~~~l~~l~~~PES 207 (485)
T KOG0569|consen 195 LLQLALLPFLPES 207 (485)
T ss_pred HHHHHHHhcCCCC
Confidence 3334455678887
No 218
>PRK09952 shikimate transporter; Provisional
Probab=97.28 E-value=0.014 Score=50.99 Aligned_cols=72 Identities=19% Similarity=0.092 Sum_probs=47.4
Q ss_pred ccchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH---------hhhcchhHHHHHHHHHHHHHHHhhcc
Q 042030 219 MAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTME---------WSRTGTFSIFWVICAAAVLFVAFLVP 289 (322)
Q Consensus 219 ~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (322)
..+....++.|.+|++.|+...+.......+|..+++.+...+.. .++...|.+.++..++ ........|
T Consensus 142 ~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~-~~~l~~~~~ 220 (438)
T PRK09952 142 EWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLI-ALWVRNGME 220 (438)
T ss_pred cHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHH-HHHHHHhCC
Confidence 345557899999999999999888888778888777766554432 4566667665544333 222233355
Q ss_pred CC
Q 042030 290 ET 291 (322)
Q Consensus 290 et 291 (322)
|+
T Consensus 221 es 222 (438)
T PRK09952 221 ES 222 (438)
T ss_pred CC
Confidence 54
No 219
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=97.20 E-value=0.0076 Score=51.89 Aligned_cols=68 Identities=7% Similarity=-0.028 Sum_probs=45.6
Q ss_pred chhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhccC
Q 042030 221 GLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTMEWSRTGTFSIFWVICAAAVLFVAFLVPE 290 (322)
Q Consensus 221 ~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 290 (322)
+....+..|..+ .++...|.....+.+|..++|.+.+.+.+.++...|.+.+.+.++..++.+...||
T Consensus 118 ~~~~~~~~~~~~--~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 185 (396)
T TIGR00882 118 GAIEAYIEKVSR--NSNFEYGKARMFGCVGWALCASIAGILFSIDPQIVFWLGSGFALILMLLLMFAKPK 185 (396)
T ss_pred hhHHHHHHHhhh--hcccccchhhhhcccHHHHHHHHHhhhhccCchHHHHHHHHHHHHHHHHHHHhCCC
Confidence 333445555432 23456677778888999999999887777777777877777777666555444444
No 220
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=97.18 E-value=0.025 Score=47.84 Aligned_cols=55 Identities=9% Similarity=0.016 Sum_probs=39.7
Q ss_pred hhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHh-h--hcchhHHHHHHH
Q 042030 222 LPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTMEW-S--RTGTFSIFWVIC 277 (322)
Q Consensus 222 ~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~--~~~~~~~~~~~~ 277 (322)
....++.|.+| +.|+.+.+..+....+|..+++.+.+.+.+. + +...+...+++.
T Consensus 107 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~ 164 (355)
T TIGR00896 107 LLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPA 164 (355)
T ss_pred cchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 33556778876 5789999999999999999999988877762 2 444555444433
No 221
>PF13347 MFS_2: MFS/sugar transport protein
Probab=97.10 E-value=0.0075 Score=52.53 Aligned_cols=84 Identities=13% Similarity=0.201 Sum_probs=55.1
Q ss_pred HHHHHHHHHHhhcccchhhhhhccccC-ccccchhHHHHHHHHHHHHHHHHHHHHHHHH-h-------hhcchhHHHHHH
Q 042030 206 VGIMGFSIAFALGMAGLPSVIMAEIFP-INIKGSAGSLVILLHNCSNWIVTYTFHFTME-W-------SRTGTFSIFWVI 276 (322)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~e~~p-~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-~-------~~~~~~~~~~~~ 276 (322)
+..+++..+++....|. .++.+|+.+ ++.|....+.-...+.+|..+...+.+.+.+ . ++.....+.+++
T Consensus 108 ~~~~l~~~~~t~~~i~~-~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv 186 (428)
T PF13347_consen 108 VFYILFDIAYTFVQIPY-NALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIV 186 (428)
T ss_pred HHHHHHHHhhhhccCch-hhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHH
Confidence 33333444444433333 778899987 4689999999888888888777777666554 1 344455556666
Q ss_pred HHHHHHHHHhhccC
Q 042030 277 CAAAVLFVAFLVPE 290 (322)
Q Consensus 277 ~~~~~~~~~~~~~e 290 (322)
.+++.++.+...||
T Consensus 187 ~~v~~~i~~~~~ke 200 (428)
T PF13347_consen 187 GLVFFLITFFFVKE 200 (428)
T ss_pred HHHHhhhhhheeee
Confidence 66666666666777
No 222
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=97.07 E-value=0.008 Score=51.81 Aligned_cols=67 Identities=12% Similarity=0.104 Sum_probs=52.6
Q ss_pred ccchhhhhhccccCcc--ccchhHHHHHHHHHHHHHHHHHHHHHHHH-hhhcchhHHHHHHHHHHHHHHH
Q 042030 219 MAGLPSVIMAEIFPIN--IKGSAGSLVILLHNCSNWIVTYTFHFTME-WSRTGTFSIFWVICAAAVLFVA 285 (322)
Q Consensus 219 ~~~~~~~~~~e~~p~~--~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 285 (322)
.-+....+..|++|++ .|..+.++.++..++|+.++|.+.+++.+ +++...|...++-..++.+..+
T Consensus 134 ~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~ 203 (498)
T COG3104 134 FKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFL 203 (498)
T ss_pred ccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHH
Confidence 4566788899999753 37889999999999999999999999988 7777777766666655555433
No 223
>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS).
Probab=97.02 E-value=0.08 Score=41.84 Aligned_cols=52 Identities=6% Similarity=0.170 Sum_probs=36.9
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHhh--h-----hh--hhHHHHHHhhHHHHHHHHHhhcc
Q 042030 12 KNIRGAFTATSQFLIVSGMSVMYLVG--T-----IV--SWRALALIAAVPCLLQVVGLFFI 63 (322)
Q Consensus 12 ~~~rg~~~~~~~~~~~~G~~l~~~~~--~-----~~--~Wr~~f~~~~~~~~i~~~~~~~l 63 (322)
.|+|+..+.+...++++|.++.-+.- . .. +|++++.+.+++.++-++....+
T Consensus 1 ~k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~if 61 (267)
T PF07672_consen 1 QKKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIF 61 (267)
T ss_pred CCccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 36788888888999999988764322 1 11 79999998888777666554433
No 224
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=96.97 E-value=0.038 Score=47.93 Aligned_cols=147 Identities=16% Similarity=0.181 Sum_probs=84.2
Q ss_pred hhhhHhcHHHHHHHc-CCCchhHHHHHHHHH--------------------------HHHHHHHHHHHHHHHHHHhccCC
Q 042030 142 SAAIAYYASYIIAAA-DLSTDIGSISMAIIQ--------------------------ASTIWMGLSLTIIALAFGLQDTH 194 (322)
Q Consensus 142 ~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~ 194 (322)
......|+.+++.+. |+++..++.+..+.. ....+. +...++.........
T Consensus 28 ~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~-ip~~i~~~l~F~~p~- 105 (467)
T COG2211 28 FGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGA-IPFAIVAVLLFITPD- 105 (467)
T ss_pred HHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHh-HHHHHHHHHHHcCCC-
Confidence 345567777777776 999998888887766 112221 122222222222221
Q ss_pred CCCCchhHHHHHHHHHHHHHHhhcccchhhhhhccccC-ccccchhHHHHHHHHHHHHHHHHHHHHHHHH-hh-------
Q 042030 195 LWNEATPVLVYVGIMGFSIAFALGMAGLPSVIMAEIFP-INIKGSAGSLVILLHNCSNWIVTYTFHFTME-WS------- 265 (322)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~------- 265 (322)
...........+...++..+++....|- .++.+|+.+ ++.|.+..+.-.....+|+.+...+.+++.. .+
T Consensus 106 ~~~~~k~~ya~vtY~l~~l~YT~vniPy-~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g 184 (467)
T COG2211 106 FSMTGKLIYALVTYMLLGLGYTLVNIPY-GALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALG 184 (467)
T ss_pred cccCcchHHHHHHHHHHHHHHHheeCch-hhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhh
Confidence 1111333444444455566666654444 567777664 5779999999999999999999888887776 22
Q ss_pred hcchhHHHHHHHHHHHHHHHhhccCC
Q 042030 266 RTGTFSIFWVICAAAVLFVAFLVPET 291 (322)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~et 291 (322)
+.....+++++..+..++++.-.+|+
T Consensus 185 ~~~~~~~~~vi~~i~~l~~~~~v~ER 210 (467)
T COG2211 185 YQGTALVLGVIGVILLLFCFFNVKER 210 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 22233334444444444444444553
No 225
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=96.95 E-value=0.013 Score=52.42 Aligned_cols=80 Identities=20% Similarity=0.126 Sum_probs=58.7
Q ss_pred HHHHHHhhcccchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhcc
Q 042030 210 GFSIAFALGMAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTMEWSRTGTFSIFWVICAAAVLFVAFLVP 289 (322)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (322)
++.+.+..+...+.+.+..|.++++.|+.+..+ ....+.++.+++.....+.. ++.+.+++.....++..++ +++.|
T Consensus 179 fl~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~-~Wr~~~~~~~~~~~~~~~~-~~l~~ 255 (521)
T KOG0255|consen 179 FLSGFFGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR-DWRWLFWIISIPSGLFLLL-WFLPP 255 (521)
T ss_pred HHHHhhccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHH-HHccC
Confidence 334555556667778999999999999999999 88888888888888887776 5555666666666555554 55566
Q ss_pred CCC
Q 042030 290 ETK 292 (322)
Q Consensus 290 et~ 292 (322)
|..
T Consensus 256 Es~ 258 (521)
T KOG0255|consen 256 ESP 258 (521)
T ss_pred cCh
Confidence 763
No 226
>KOG3098 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.92 E-value=0.15 Score=44.35 Aligned_cols=43 Identities=14% Similarity=0.162 Sum_probs=30.9
Q ss_pred cccchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHH
Q 042030 218 GMAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFT 261 (322)
Q Consensus 218 ~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~ 261 (322)
.+....+.++...+ ++.|..+.++.-.-..+++.++-+..+..
T Consensus 369 ~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~~~~ 411 (461)
T KOG3098|consen 369 CFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFSPYL 411 (461)
T ss_pred HHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 35566688888888 56788888888777777776666665543
No 227
>PRK10429 melibiose:sodium symporter; Provisional
Probab=96.70 E-value=0.08 Score=46.86 Aligned_cols=49 Identities=0% Similarity=-0.107 Sum_probs=31.7
Q ss_pred HHHHhhcccchhhhhhcccc-CccccchhHHHHHHHHHHHHHHHHHHHHHH
Q 042030 212 SIAFALGMAGLPSVIMAEIF-PINIKGSAGSLVILLHNCSNWIVTYTFHFT 261 (322)
Q Consensus 212 ~~~~~~~~~~~~~~~~~e~~-p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~ 261 (322)
..+++....| ..++.+|+. +++.|....+.-...+.+|+.+.+.+...+
T Consensus 117 ~~~~t~~~ip-~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~ 166 (473)
T PRK10429 117 GMTYTIMDIP-FWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPF 166 (473)
T ss_pred HHHHHHHcch-HHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444433333 367788988 578899988887777777766666554433
No 228
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=96.69 E-value=0.13 Score=43.48 Aligned_cols=66 Identities=5% Similarity=-0.143 Sum_probs=48.5
Q ss_pred cchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHh--------------------hhcchhHHHHHHHHH
Q 042030 220 AGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTMEW--------------------SRTGTFSIFWVICAA 279 (322)
Q Consensus 220 ~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~ 279 (322)
......+++.+.|++..+.-+.+...++.+|++++|.+...+... ....++..++....+
T Consensus 122 etaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~~~~~~~~~~~v~~pYl~~~~~lvl 201 (422)
T COG0738 122 ETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQILAIKGADASSVQFPYLILAGLLVL 201 (422)
T ss_pred HhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 344578888999988778888999999999999999998876652 134456666666665
Q ss_pred HHHHHH
Q 042030 280 AVLFVA 285 (322)
Q Consensus 280 ~~~~~~ 285 (322)
.++...
T Consensus 202 l~v~~~ 207 (422)
T COG0738 202 LAVLIL 207 (422)
T ss_pred HHHHHH
Confidence 555433
No 229
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=96.69 E-value=0.36 Score=41.85 Aligned_cols=35 Identities=17% Similarity=0.156 Sum_probs=27.5
Q ss_pred hhhhhccccCccccchhHHHHHHHHHHHHHHHHHH
Q 042030 223 PSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYT 257 (322)
Q Consensus 223 ~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~ 257 (322)
..-+..|..|++.|++..|+-+...++...+.-.+
T Consensus 377 ~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~ 411 (432)
T PF06963_consen 377 VTQIMQENVPESERGAVSGVQNSLQSLFELLSFVL 411 (432)
T ss_pred HHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 35678899999999999999888888776554433
No 230
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=96.66 E-value=0.001 Score=57.63 Aligned_cols=64 Identities=17% Similarity=0.279 Sum_probs=51.1
Q ss_pred ceeeeeecCCCCchhhHHHHH-HHHHHHHHHHHHhhhhh----------hhHHHHHHhhHHHHHHHH-HhhccCCC
Q 042030 3 PIYIAEITPKNIRGAFTATSQ-FLIVSGMSVMYLVGTIV----------SWRALALIAAVPCLLQVV-GLFFIPES 66 (322)
Q Consensus 3 ~~~i~e~~~~~~rg~~~~~~~-~~~~~G~~l~~~~~~~~----------~Wr~~f~~~~~~~~i~~~-~~~~lpes 66 (322)
..+++|++|+++||+..++.+ ..+.+|..+++.+++.+ |||+.|.+.+++.++..+ ..+++||+
T Consensus 330 ~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~ 405 (418)
T TIGR00889 330 SVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYS 405 (418)
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 356789999999999999997 56788888888877543 499999988888777654 45678887
No 231
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=96.58 E-value=0.1 Score=46.05 Aligned_cols=72 Identities=15% Similarity=0.016 Sum_probs=49.6
Q ss_pred ccchhhhhhccccCccccchh---HHHHHHHHHHHHHHHHHHHHHHHH-hhhcchhHHHHHHHHHHHHHHHhhccCCC
Q 042030 219 MAGLPSVIMAEIFPINIKGSA---GSLVILLHNCSNWIVTYTFHFTME-WSRTGTFSIFWVICAAAVLFVAFLVPETK 292 (322)
Q Consensus 219 ~~~~~~~~~~e~~p~~~r~~~---~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~et~ 292 (322)
.....-.+..|..+ +.++.+ .+.......+|..+++.+.+.+.+ .++...|.+.+++.++. .+...+.+|.+
T Consensus 137 ~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~-~~~~~~~~E~~ 212 (468)
T TIGR00788 137 YDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQ-LFVSNLSKERR 212 (468)
T ss_pred HHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHH-HHHHHhccccc
Confidence 34556788889888 444443 334444455899999999998888 57777787777777666 44456678864
No 232
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=96.50 E-value=0.015 Score=48.22 Aligned_cols=74 Identities=9% Similarity=0.017 Sum_probs=53.2
Q ss_pred ccchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH-----------------hhhcchhHHHHHHHHHHH
Q 042030 219 MAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTME-----------------WSRTGTFSIFWVICAAAV 281 (322)
Q Consensus 219 ~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~ 281 (322)
..+....+++++.|++.+++.+++...+..+|..++|.+.+.+.. ..+..+++..+++..+..
T Consensus 27 lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~yl~ia~~~~~~~ 106 (310)
T TIGR01272 27 LQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATANAEAAKVHTPYLLLAGALAVLA 106 (310)
T ss_pred HHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 455668999999999999999999999999999999999987763 234456665555544444
Q ss_pred HH-HHhhccCCC
Q 042030 282 LF-VAFLVPETK 292 (322)
Q Consensus 282 ~~-~~~~~~et~ 292 (322)
+. .+.-.||.+
T Consensus 107 i~~~~~~~p~~~ 118 (310)
T TIGR01272 107 IIFAFLPLPELQ 118 (310)
T ss_pred HHHHHccCCCCC
Confidence 32 233345543
No 233
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=96.47 E-value=0.092 Score=44.81 Aligned_cols=72 Identities=18% Similarity=0.174 Sum_probs=48.0
Q ss_pred ccchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH---------hhhcchhHHHHHHHHHHHHHHHhhcc
Q 042030 219 MAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTME---------WSRTGTFSIFWVICAAAVLFVAFLVP 289 (322)
Q Consensus 219 ~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (322)
..+....++.|.+|++.|+...+.......+|..+++.+...+.. .++...+.+.+++.+++. ......|
T Consensus 113 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~-~~~~~~~ 191 (394)
T TIGR00883 113 EWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGL-YLRRNLE 191 (394)
T ss_pred cccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHH-HHHHhcC
Confidence 345557889999999999999999999888999888887665432 344455555444443332 2233445
Q ss_pred CC
Q 042030 290 ET 291 (322)
Q Consensus 290 et 291 (322)
|+
T Consensus 192 ~~ 193 (394)
T TIGR00883 192 ET 193 (394)
T ss_pred CC
Confidence 54
No 234
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=96.40 E-value=0.0059 Score=52.03 Aligned_cols=53 Identities=13% Similarity=0.038 Sum_probs=35.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhcc
Q 042030 237 GSAGSLVILLHNCSNWIVTYTFHFTMEWSRTGTFSIFWVICAAAVLFVAFLVP 289 (322)
Q Consensus 237 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (322)
+.-.|=....+.+|.+++..+.|.+.+.++...+++..+..++..++.+...|
T Consensus 137 ~feYG~~R~wGSig~ai~s~~~G~L~~i~p~~~fwi~s~~~~il~lll~~~~~ 189 (412)
T PF01306_consen 137 GFEYGRARMWGSIGFAIASLLAGILFNINPNIIFWIASAAAIILLLLLLLLKP 189 (412)
T ss_dssp SS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS--
T ss_pred cCCcchHHHHhhHHHHHHHHHhheeeeeCccHHHHHHHHHHHHHHHHHHHcCC
Confidence 45566688889999999999999998877777777655544444444444433
No 235
>KOG3762 consensus Predicted transporter [General function prediction only]
Probab=96.38 E-value=0.0068 Score=52.69 Aligned_cols=84 Identities=20% Similarity=0.267 Sum_probs=59.5
Q ss_pred chhHHHHHHHHHHHHHHhhcccchhhhhhccccCccccchhHHHHHHH-HHHHHHHHHHHHHHHHH-hhhcchhHHHHHH
Q 042030 199 ATPVLVYVGIMGFSIAFALGMAGLPSVIMAEIFPINIKGSAGSLVILL-HNCSNWIVTYTFHFTME-WSRTGTFSIFWVI 276 (322)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~-~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~ 276 (322)
.++|..+..=.+-+..+...|..+ .+|++...|++.|+++.++.... ..+|-.+|.++.+.+.+ .+....|-.+++.
T Consensus 457 ~n~W~vLPieilqgit~aliWaa~-~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giA 535 (618)
T KOG3762|consen 457 QNPWMVLPIEILQGITHALIWAAI-ISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIA 535 (618)
T ss_pred cCchheeeHHHHHHHHHHHHHHHH-HHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHH
Confidence 345666655555556666554444 78999999999999999997544 45788888888887777 6666667777666
Q ss_pred HHHHHHH
Q 042030 277 CAAAVLF 283 (322)
Q Consensus 277 ~~~~~~~ 283 (322)
+++..++
T Consensus 536 cl~~l~~ 542 (618)
T KOG3762|consen 536 CLVTLAL 542 (618)
T ss_pred HHHHHHH
Confidence 6665543
No 236
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=96.32 E-value=0.34 Score=41.44 Aligned_cols=39 Identities=8% Similarity=-0.170 Sum_probs=30.5
Q ss_pred hhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 042030 224 SVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTM 262 (322)
Q Consensus 224 ~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~ 262 (322)
+..+.|..|++.|.-++|.......+|..++..+.-++.
T Consensus 357 F~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~le 395 (402)
T PF02487_consen 357 FYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPLE 395 (402)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 555677789999999999999888888877777655443
No 237
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=96.26 E-value=0.24 Score=43.22 Aligned_cols=68 Identities=16% Similarity=0.259 Sum_probs=50.3
Q ss_pred hhhhhcccc---CccccchhHHHHHHHHHHHHHHHHHHHHHHHH-hhhcchhHHHHHHHHHHHHHHHhhccCC
Q 042030 223 PSVIMAEIF---PINIKGSAGSLVILLHNCSNWIVTYTFHFTME-WSRTGTFSIFWVICAAAVLFVAFLVPET 291 (322)
Q Consensus 223 ~~~~~~e~~---p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~et 291 (322)
.-.+..|.. |.+ |+.-.+.+..+..+|++++..+.+.+.+ .++...|.+.+.+..+..+....+.+|+
T Consensus 107 aDa~vvE~~~~~p~~-~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~~~~~~~~~e~ 178 (433)
T PF03092_consen 107 ADALVVELARREPES-RGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLMLIVALFLLEER 178 (433)
T ss_pred hhHHHHHHhhcCCch-hHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHHHHHHHhhhhc
Confidence 355566654 444 7788888888899999999999988888 6667777777777777666666666663
No 238
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]
Probab=96.12 E-value=0.23 Score=43.60 Aligned_cols=79 Identities=13% Similarity=0.065 Sum_probs=67.3
Q ss_pred cchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH-hhhcchhHHHHHHHHHHHHHHHhhccCCCCCChhH
Q 042030 220 AGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTME-WSRTGTFSIFWVICAAAVLFVAFLVPETKGRHSKK 298 (322)
Q Consensus 220 ~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~et~~~~~~~ 298 (322)
.....+++++....+.|....|+.+..-+.+..++|.+.+.+.+ .+...++.+..+..++..++....+||+...+.++
T Consensus 130 ~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~ 209 (463)
T KOG2816|consen 130 FSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKERS 209 (463)
T ss_pred hhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCccccc
Confidence 34447889999999999999999999999999999999998888 77778888888888888888889999987655443
No 239
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=96.09 E-value=0.18 Score=42.78 Aligned_cols=46 Identities=11% Similarity=0.140 Sum_probs=39.3
Q ss_pred hhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH-hhhc
Q 042030 222 LPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTME-WSRT 267 (322)
Q Consensus 222 ~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~ 267 (322)
...++.+|..|++.|+.+.++.....-+|.+++..+.+.+.+ +...
T Consensus 109 ~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~ 155 (403)
T PF03209_consen 109 SFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPE 155 (403)
T ss_pred HHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHH
Confidence 346789999999999999999999999999999999988777 4433
No 240
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=95.91 E-value=0.25 Score=44.30 Aligned_cols=88 Identities=18% Similarity=0.211 Sum_probs=56.8
Q ss_pred hHHHHHHHHHHHHHHhhcccchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH-h--hhcchhHHHHHHH
Q 042030 201 PVLVYVGIMGFSIAFALGMAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTME-W--SRTGTFSIFWVIC 277 (322)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-~--~~~~~~~~~~~~~ 277 (322)
....+++-++.+.+.+.. ..+...|.+|..|++.|+...+.......+|..++ ++.+...+ . +|...+.+..+.+
T Consensus 142 ~~~l~~GR~l~G~g~G~~-~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~-~~~~~~~~~~~~~Wr~~~~~~~i~~ 219 (513)
T KOG0254|consen 142 WYQLIVGRILTGLGVGGA-SVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLG-YCINYGTSKVYAGWRIPLGLALIPA 219 (513)
T ss_pred HHHHHHHHHHhccchhhh-hhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHH-HHHhhhhccCCccHHHHHHHHHHHH
Confidence 344555555444443333 33457899999999999999999888887776666 44444443 2 4555555555555
Q ss_pred HHHHHHHHhhccCC
Q 042030 278 AAAVLFVAFLVPET 291 (322)
Q Consensus 278 ~~~~~~~~~~~~et 291 (322)
++..+. .+++||+
T Consensus 220 ~~~~~~-~~~~pes 232 (513)
T KOG0254|consen 220 VILALG-MLFLPES 232 (513)
T ss_pred HHHHHH-HHhCCCC
Confidence 555555 6778876
No 241
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=95.70 E-value=1.3 Score=41.00 Aligned_cols=65 Identities=12% Similarity=0.059 Sum_probs=46.2
Q ss_pred ccchhhhhhccccCcc---ccchhHHHHHHHHHHHHHHHHHHHHHHHH-h-------hhcchhHHHHHHHHHHHHH
Q 042030 219 MAGLPSVIMAEIFPIN---IKGSAGSLVILLHNCSNWIVTYTFHFTME-W-------SRTGTFSIFWVICAAAVLF 283 (322)
Q Consensus 219 ~~~~~~~~~~e~~p~~---~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-~-------~~~~~~~~~~~~~~~~~~~ 283 (322)
.-|...+...|.++++ .|.....+.+...++|+.+++.+.+.+.+ . ++...|.+.+++.+++.++
T Consensus 102 iKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lv 177 (654)
T TIGR00926 102 IKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIV 177 (654)
T ss_pred cccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHH
Confidence 4466677888888753 46778888999999999999999998874 2 2444555555555555443
No 242
>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]. This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane
Probab=95.34 E-value=0.42 Score=41.72 Aligned_cols=45 Identities=16% Similarity=0.005 Sum_probs=34.9
Q ss_pred ccchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 042030 219 MAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTME 263 (322)
Q Consensus 219 ~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~ 263 (322)
+.....++-+.+..|..-||-+.+.|++.|+|+-.-..+.-++.|
T Consensus 422 mFVai~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD 466 (544)
T PF13000_consen 422 MFVAIMAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVLWLVD 466 (544)
T ss_pred HHHHHHHHHhhccCcccchHHHHHHHHHHhcCCCchHHHHHHHhh
Confidence 344457788889999999999999999999998776665555543
No 243
>PRK09848 glucuronide transporter; Provisional
Probab=95.32 E-value=1.8 Score=38.01 Aligned_cols=26 Identities=4% Similarity=0.143 Sum_probs=15.8
Q ss_pred HhcHHHHHHHc-CCCchhHHHHHHHHH
Q 042030 146 AYYASYIIAAA-DLSTDIGSISMAIIQ 171 (322)
Q Consensus 146 ~~~~~~~~~~~-g~~~~~~~~~~~~~~ 171 (322)
..|.+.++++. |++....+.+..+..
T Consensus 28 ~~~l~~y~~~~~gl~~~~~g~~~~~~~ 54 (448)
T PRK09848 28 ALFLLSYYTDVAGVGAAAAGTMLLLVR 54 (448)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 33444455554 888877766665554
No 244
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=94.99 E-value=1.1 Score=38.77 Aligned_cols=30 Identities=17% Similarity=0.113 Sum_probs=22.6
Q ss_pred hhhhHhcHHHHHHHcCCCchhHHHHHHHHH
Q 042030 142 SAAIAYYASYIIAAADLSTDIGSISMAIIQ 171 (322)
Q Consensus 142 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 171 (322)
+....-|.+.++++.|++..+.+.+.++..
T Consensus 18 ~G~~~p~~~~~L~~~G~s~~qIG~l~a~~~ 47 (400)
T PF03825_consen 18 YGAFLPYLPLYLESRGFSGTQIGILLAVGP 47 (400)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 444556778899999999887777777555
No 245
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=94.64 E-value=0.3 Score=41.70 Aligned_cols=82 Identities=13% Similarity=0.084 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHhhcccchhhhhhccccCcc---ccchhHHHHHHHHHHHHHHHHHHHHHHHH-hhhcchhHHHHHHHH
Q 042030 203 LVYVGIMGFSIAFALGMAGLPSVIMAEIFPIN---IKGSAGSLVILLHNCSNWIVTYTFHFTME-WSRTGTFSIFWVICA 278 (322)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~---~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 278 (322)
...+++.+...+ ..+.-|...++.+|.++++ .|..+....+..-++|+.+++...+++.+ .++...|.+.++..+
T Consensus 35 ~~~~gL~lia~G-~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~ 113 (372)
T PF00854_consen 35 LFYIGLALIAVG-TGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGML 113 (372)
T ss_dssp HHHHHHHHHHHH-HHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc-cccccccHHHHHHHHhcccchhhhhhhHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHH
Confidence 334444433333 3345677788999999876 46677788899999999999999998887 777777777776666
Q ss_pred HHHHHHH
Q 042030 279 AAVLFVA 285 (322)
Q Consensus 279 ~~~~~~~ 285 (322)
++.+..+
T Consensus 114 ~~~~~f~ 120 (372)
T PF00854_consen 114 LALIVFL 120 (372)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6655433
No 246
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=94.49 E-value=2.6 Score=35.52 Aligned_cols=133 Identities=14% Similarity=0.129 Sum_probs=80.0
Q ss_pred hhHhcHHHHHHHcCCCchhHHHHHHHHH----------------HH-HHHHHHHHHHHHHHHHhccCCCCCCchhHHHHH
Q 042030 144 AIAYYASYIIAAADLSTDIGSISMAIIQ----------------AS-TIWMGLSLTIIALAFGLQDTHLWNEATPVLVYV 206 (322)
Q Consensus 144 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~----------------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (322)
.+.-.++.+-++.|.+...+++++.+.. .+ ......++++++........ ......+.
T Consensus 30 svgPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~-----~~~~~L~~ 104 (395)
T COG2807 30 SVGPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSL-----GGLPLLFL 104 (395)
T ss_pred hhhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhc-----ccHHHHHH
Confidence 3444556677778998888877777655 11 11122222222222222221 11233333
Q ss_pred HHHHHHHHHhhcccchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH-h-hhcchhHHHHHHHHHHHHH
Q 042030 207 GIMGFSIAFALGMAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTME-W-SRTGTFSIFWVICAAAVLF 283 (322)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~ 283 (322)
...+.+.+.+. .+......+-+-||.+. +..+|+.+....+++++++.+..++.+ . ++.....+.+..++++.+.
T Consensus 105 gt~l~G~gIav-~nVLLPslIK~~Fpk~~-~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~allAl~~ 181 (395)
T COG2807 105 GTLLAGAGIAV-INVLLPSLIKRDFPKRV-GLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALLALLALLI 181 (395)
T ss_pred HHHHHHhhHHH-HHHhhhHHHHhhcccch-hhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHHHH
Confidence 33333333222 23445677888999665 889999999999999999999988888 3 4777777778877776653
No 247
>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]
Probab=94.19 E-value=1.5 Score=37.04 Aligned_cols=80 Identities=13% Similarity=-0.011 Sum_probs=53.4
Q ss_pred HHHHHhhcccchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH-hhhcchhHHHHHHHHHHHHHHHhhcc
Q 042030 211 FSIAFALGMAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTME-WSRTGTFSIFWVICAAAVLFVAFLVP 289 (322)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (322)
...+++.+..|...++-.|..|...|..-+-+. +...+|..+...+.-.... .++.+-.+.......+.+. .++++|
T Consensus 174 ~l~~~g~gg~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~gwr~~l~~~~~pl~~~a~-f~~w~~ 251 (528)
T KOG0253|consen 174 ALWGFGVGGLPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNFGWRYLLFTSSTPLMFAAR-FLVWVY 251 (528)
T ss_pred HHHhccCCCccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHH-HHhhcc
Confidence 344555666777778888999999998887666 6666787777766654444 6666555555544444444 456678
Q ss_pred CCC
Q 042030 290 ETK 292 (322)
Q Consensus 290 et~ 292 (322)
|..
T Consensus 252 ESp 254 (528)
T KOG0253|consen 252 ESP 254 (528)
T ss_pred cCc
Confidence 764
No 248
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]
Probab=93.13 E-value=0.085 Score=45.33 Aligned_cols=66 Identities=26% Similarity=0.180 Sum_probs=55.8
Q ss_pred ceeeeeecCCCCchhhHHHHHHHHHHHHHHHHHhhhh---------hhhHHHHHHhhHHHHHHHHHhhccCCChH
Q 042030 3 PIYIAEITPKNIRGAFTATSQFLIVSGMSVMYLVGTI---------VSWRALALIAAVPCLLQVVGLFFIPESPR 68 (322)
Q Consensus 3 ~~~i~e~~~~~~rg~~~~~~~~~~~~G~~l~~~~~~~---------~~Wr~~f~~~~~~~~i~~~~~~~lpesp~ 68 (322)
.++-+|.+|.+-||..-++.....-+|.+++...-.. .+-|+.|++.+...++..+..+++|||.+
T Consensus 428 fivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~pEtk~ 502 (538)
T KOG0252|consen 428 FIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLIPETKG 502 (538)
T ss_pred EEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeEEeecccc
Confidence 4677899999999999999998888888887655433 27899999999999999888999999854
No 249
>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]
Probab=92.81 E-value=2.7 Score=35.73 Aligned_cols=52 Identities=17% Similarity=0.032 Sum_probs=38.8
Q ss_pred HHHHhhcccchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 042030 212 SIAFALGMAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTME 263 (322)
Q Consensus 212 ~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~ 263 (322)
..++...+....++..+.+.|+...|+-+.+.++..++|+-.-..+..++.+
T Consensus 379 ~~~~~ts~fv~~maf~aqisdp~iggTymTlLNTLsnLGg~wp~tv~l~l~D 430 (510)
T KOG3574|consen 379 HQVFVTSMFVSGMAFHAQISDPAIGGTYMTLLNTLSNLGGNWPGTVALWLAD 430 (510)
T ss_pred hhhHHHHHHHHHHHHHhhcCCcccCccHHHHHHHHHHhcCCcHHHHHHHhcc
Confidence 3333333444447788999999999999999999999998766666666665
No 250
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=92.67 E-value=0.0037 Score=54.81 Aligned_cols=72 Identities=17% Similarity=0.203 Sum_probs=46.9
Q ss_pred ccchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH----hhhcchhHHHHHHHHHHHHHHHhhccCC
Q 042030 219 MAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTME----WSRTGTFSIFWVICAAAVLFVAFLVPET 291 (322)
Q Consensus 219 ~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~et 291 (322)
..+....++.|..|++.|+...++......+|..++..+...... ..+...+.+.++..++. ++...++||+
T Consensus 119 ~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~-~~~~~~~pES 194 (451)
T PF00083_consen 119 AYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLV-LLLRFFLPES 194 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccc
Confidence 345568899999999999999998888777777777666543322 12334444444444333 3344668886
No 251
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=92.28 E-value=7.9 Score=34.45 Aligned_cols=72 Identities=11% Similarity=0.067 Sum_probs=50.8
Q ss_pred hhhhhhccccCcccc--------------------------chhHHHHHHHHHHHHHHHHHHHHHHHH-h-h-------h
Q 042030 222 LPSVIMAEIFPINIK--------------------------GSAGSLVILLHNCSNWIVTYTFHFTME-W-S-------R 266 (322)
Q Consensus 222 ~~~~~~~e~~p~~~r--------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~-~-~-------~ 266 (322)
...++.+|+.+++.+ +...+.....+++|+.+.-.+.-.+.. . . .
T Consensus 146 fyna~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~ 225 (477)
T PF11700_consen 146 FYNAYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAI 225 (477)
T ss_pred HHHHHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhh
Confidence 347789999988888 899999999999999887776544433 1 1 2
Q ss_pred cchhHHHHHHHHHHHHHHHhhccCCCC
Q 042030 267 TGTFSIFWVICAAAVLFVAFLVPETKG 293 (322)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~et~~ 293 (322)
...+.+.++.-++..+..++++||..+
T Consensus 226 r~~~~~~a~ww~vfsiP~~~~~~~~~~ 252 (477)
T PF11700_consen 226 RVAFLIVALWWLVFSIPLFLWLPDRPG 252 (477)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 344555666666666666777787754
No 252
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=92.20 E-value=7.9 Score=34.29 Aligned_cols=37 Identities=11% Similarity=-0.106 Sum_probs=32.0
Q ss_pred eeeeeecCCCCchhhHHHHHHHHHHHHHHHHHhhhhh
Q 042030 4 IYIAEITPKNIRGAFTATSQFLIVSGMSVMYLVGTIV 40 (322)
Q Consensus 4 ~~i~e~~~~~~rg~~~~~~~~~~~~G~~l~~~~~~~~ 40 (322)
.++.|.++.++-.|..++...+.++|.++++.+...+
T Consensus 152 ~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~ 188 (472)
T TIGR00769 152 GFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYF 188 (472)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999999999999999998776554
No 253
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]
Probab=91.36 E-value=1.9 Score=39.90 Aligned_cols=76 Identities=9% Similarity=-0.029 Sum_probs=52.3
Q ss_pred ccchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH----h----------------hhcchhHHHHHHHH
Q 042030 219 MAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTME----W----------------SRTGTFSIFWVICA 278 (322)
Q Consensus 219 ~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~----~----------------~~~~~~~~~~~~~~ 278 (322)
..++-.+|+-|..-++.-+.-.|+.+++.-+|.++|-.+.+.... . -|+..|++.+.+.+
T Consensus 254 i~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~ 333 (735)
T KOG3626|consen 254 IFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLL 333 (735)
T ss_pred CccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHH
Confidence 455567788888888887888899988888888888777776654 1 12344777777777
Q ss_pred HHHHHHHhhccCCCCCC
Q 042030 279 AAVLFVAFLVPETKGRH 295 (322)
Q Consensus 279 ~~~~~~~~~~~et~~~~ 295 (322)
+.++..++ .|.+..+.
T Consensus 334 ~~a~p~f~-fPk~lp~~ 349 (735)
T KOG3626|consen 334 FSAVPLFF-FPKELPKS 349 (735)
T ss_pred HHHHHHHh-CcccCccc
Confidence 77665444 55554443
No 254
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=89.72 E-value=14 Score=32.78 Aligned_cols=49 Identities=14% Similarity=-0.043 Sum_probs=40.6
Q ss_pred HHhhcccc-hhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 042030 214 AFALGMAG-LPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTM 262 (322)
Q Consensus 214 ~~~~~~~~-~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~ 262 (322)
.++....+ +.|.+++|++.+++-.+-.++....+++|.++++.+...+.
T Consensus 140 lw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~ 189 (472)
T TIGR00769 140 LWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFS 189 (472)
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333 66999999999999999999999999999999999887766
No 255
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=89.51 E-value=12 Score=31.62 Aligned_cols=65 Identities=17% Similarity=0.172 Sum_probs=39.5
Q ss_pred ccCccccchhHHHHHHH-HHHHHHHHHHHHHHHHH---hhhcchhHHHHHHHHHHHHHHHhhccCCCCC
Q 042030 230 IFPINIKGSAGSLVILL-HNCSNWIVTYTFHFTME---WSRTGTFSIFWVICAAAVLFVAFLVPETKGR 294 (322)
Q Consensus 230 ~~p~~~r~~~~~~~~~~-~~~g~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~et~~~ 294 (322)
-+|.+..+...+..... +.+-++.+..+...+.+ .+.-.+|.....+.+++++++....+|+.+.
T Consensus 154 g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~~~W~ENyg~ 222 (354)
T PF05631_consen 154 GFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLILKTWPENYGD 222 (354)
T ss_pred CCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHhcccccCCC
Confidence 34544444445444422 33445555555555555 3446778888888888888777778887654
No 256
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=88.08 E-value=0.098 Score=46.91 Aligned_cols=69 Identities=7% Similarity=-0.031 Sum_probs=0.0
Q ss_pred ccchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH----h-------------------hhcchhHHHHH
Q 042030 219 MAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTME----W-------------------SRTGTFSIFWV 275 (322)
Q Consensus 219 ~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~----~-------------------~~~~~~~~~~~ 275 (322)
..++..+|+-|..+++.-+.-.|+.++...+|..+|-.+.+...+ . .|+..|++.+.
T Consensus 158 l~tLG~tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~ 237 (539)
T PF03137_consen 158 LYTLGITYIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGI 237 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CccceeeeeccccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHH
Confidence 345567899999999888888888888877777666555443321 0 13445666677
Q ss_pred HHHHHHHHHHhh
Q 042030 276 ICAAAVLFVAFL 287 (322)
Q Consensus 276 ~~~~~~~~~~~~ 287 (322)
+.++.++..+.+
T Consensus 238 ~~~l~aipl~~F 249 (539)
T PF03137_consen 238 LLFLSAIPLFFF 249 (539)
T ss_dssp ------------
T ss_pred HHHHHHHHHHcC
Confidence 666666654443
No 257
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=87.84 E-value=18 Score=31.76 Aligned_cols=38 Identities=11% Similarity=0.100 Sum_probs=28.4
Q ss_pred cchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHH
Q 042030 220 AGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYT 257 (322)
Q Consensus 220 ~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~ 257 (322)
.+....+.++..+++.|..+-.+....-.+|-.+|..+
T Consensus 390 ~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l 427 (437)
T TIGR00939 390 GSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVL 427 (437)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44557778888888888888888777777777666655
No 258
>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]
Probab=86.71 E-value=10 Score=34.64 Aligned_cols=38 Identities=16% Similarity=0.182 Sum_probs=31.7
Q ss_pred hhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 042030 226 IMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTME 263 (322)
Q Consensus 226 ~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~ 263 (322)
+.-+.+|++.|+.+.++......+|..++..+......
T Consensus 482 FfY~qaP~sMkS~~~al~l~t~a~G~~lss~Lv~~v~~ 519 (571)
T KOG1237|consen 482 FFYSQAPESMKSVATALWLLTVAVGNYLSSVLVSLVQF 519 (571)
T ss_pred HhHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33356799999999999999999999999998876555
No 259
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=85.44 E-value=2.1 Score=34.16 Aligned_cols=58 Identities=16% Similarity=0.266 Sum_probs=40.3
Q ss_pred eecCCCCchhhHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHhhHHHHHHHHHhhccCCC
Q 042030 8 EITPKNIRGAFTATSQFLIVSGMSVMYLVGTIV----SWRALALIAAVPCLLQVVGLFFIPES 66 (322)
Q Consensus 8 e~~~~~~rg~~~~~~~~~~~~G~~l~~~~~~~~----~Wr~~f~~~~~~~~i~~~~~~~lpes 66 (322)
+.+| ++||.+.++.-....++..+-..+...+ .-+.++.+...+.++.++..++++.-
T Consensus 123 ~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~~~~~fll~la~~~~~v~l~~~~~vr~~ 184 (250)
T PF06813_consen 123 RNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGDDPSSFLLFLAVLPAVVCLVAMFFVRPV 184 (250)
T ss_pred HhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhhheecc
Confidence 4455 5799999999999999887766655544 35666666666777666665555443
No 260
>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs. Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.
Probab=85.18 E-value=0.27 Score=40.78 Aligned_cols=38 Identities=13% Similarity=0.129 Sum_probs=2.5
Q ss_pred cchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHH
Q 042030 220 AGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYT 257 (322)
Q Consensus 220 ~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~ 257 (322)
.+....+.++..+++.|..+-.+....-.+|-.+|..+
T Consensus 266 ~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~l 303 (309)
T PF01733_consen 266 STLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVL 303 (309)
T ss_dssp -HHHH---------------------------------
T ss_pred hhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567788888888888887777666666666555544
No 261
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=85.18 E-value=25 Score=30.79 Aligned_cols=37 Identities=16% Similarity=0.041 Sum_probs=29.0
Q ss_pred hhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 042030 226 IMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTM 262 (322)
Q Consensus 226 ~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~ 262 (322)
...--||+++|+++..+..+.+.+|..++..+-+.+.
T Consensus 164 iA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV 200 (480)
T KOG2563|consen 164 IAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILV 200 (480)
T ss_pred HHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceec
Confidence 3445789999999999999888888888776655444
No 262
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.73 E-value=1.4 Score=29.42 Aligned_cols=32 Identities=19% Similarity=0.189 Sum_probs=27.5
Q ss_pred CccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 042030 232 PINIKGSAGSLVILLHNCSNWIVTYTFHFTME 263 (322)
Q Consensus 232 p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~ 263 (322)
.++.++.+.++-...-.+++++.....+++.+
T Consensus 36 a~s~k~~~~a~klssefIsGilVGa~iG~llD 67 (116)
T COG5336 36 AESIKGYAQAFKLSSEFISGILVGAGIGWLLD 67 (116)
T ss_pred chhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667888888888899999999999999998
No 263
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=84.42 E-value=30 Score=30.97 Aligned_cols=37 Identities=14% Similarity=-0.004 Sum_probs=30.1
Q ss_pred eeeeeecCCCCchhhHHHHHHHHHHHHHHHHHhhhhh
Q 042030 4 IYIAEITPKNIRGAFTATSQFLIVSGMSVMYLVGTIV 40 (322)
Q Consensus 4 ~~i~e~~~~~~rg~~~~~~~~~~~~G~~l~~~~~~~~ 40 (322)
.+..|.++.++-.|..+++..+.++|.++++.+...+
T Consensus 167 ~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~ 203 (491)
T PF03219_consen 167 GFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYF 203 (491)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456888889999999999999999999887766444
No 264
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=84.27 E-value=21 Score=30.89 Aligned_cols=82 Identities=15% Similarity=0.119 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHhhcccchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH--hhhcchhHHHHHHHHH
Q 042030 202 VLVYVGIMGFSIAFALGMAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTME--WSRTGTFSIFWVICAA 279 (322)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 279 (322)
+.-++++.+ ...+.+.+-+...-.+..+|+.. .+.-...-..++.+++..+..+.+ ......+.++..+.++
T Consensus 113 ~~~l~Gv~l--as~ssg~GE~tfL~lt~~y~~~~----l~~wssGTG~aGl~Ga~~y~~lT~~g~s~~~tll~~~~lp~~ 186 (402)
T PF02487_consen 113 WVRLLGVVL--ASLSSGLGEVTFLSLTHFYGKSS----LSAWSSGTGGAGLVGALYYLGLTTLGLSPRTTLLIMLVLPAI 186 (402)
T ss_pred hHHHHHHHH--HhhhhhhhHHHHHHHHHhcCccc----cccccCCcChhhHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH
Confidence 333444433 33344444444443445666432 222222223445555555544444 3444556666666555
Q ss_pred HHHHHHhhcc
Q 042030 280 AVLFVAFLVP 289 (322)
Q Consensus 280 ~~~~~~~~~~ 289 (322)
..+..++.+|
T Consensus 187 ~~~~~f~~L~ 196 (402)
T PF02487_consen 187 FLLSYFFLLP 196 (402)
T ss_pred HHHHHHHhhc
Confidence 5544444554
No 265
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=83.65 E-value=4.5 Score=35.98 Aligned_cols=42 Identities=14% Similarity=-0.119 Sum_probs=36.9
Q ss_pred hhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 042030 222 LPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTME 263 (322)
Q Consensus 222 ~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~ 263 (322)
+.|.+++|+++.+.-.+-.++....+++|.+++..+.....+
T Consensus 164 LFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 164 LFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 458999999999998999999999999999999888776665
No 266
>PRK10697 DNA-binding transcriptional activator PspC; Provisional
Probab=80.09 E-value=2.9 Score=28.78 Aligned_cols=32 Identities=13% Similarity=0.073 Sum_probs=15.4
Q ss_pred HHHhhccCCChHHHHhcCCHHHHHHHHHHHhC
Q 042030 57 VVGLFFIPESPRWLAKIGKEKELETTLQCLRG 88 (322)
Q Consensus 57 ~~~~~~lpesp~~l~~~~~~~~a~~~~~~~~~ 88 (322)
+++++.+|+.|.-....+..+.++..++++..
T Consensus 57 i~l~~~lp~~P~~~~~~~~~~s~~~~l~~~~~ 88 (118)
T PRK10697 57 IILSFALDPMPDNMAFGEQQPSSSELLDEVDR 88 (118)
T ss_pred HHHHHhccCCcccccccccCCCHHHHHHHHHH
Confidence 34567788877532222223334444444443
No 267
>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]
Probab=77.13 E-value=9.3 Score=33.42 Aligned_cols=133 Identities=16% Similarity=0.044 Sum_probs=70.9
Q ss_pred HHHHHHHHHHhhhhccchhhhHhcHHHHHHHcCCCchhHHHHHHHHH-----------------------------HHHH
Q 042030 125 YSLSVGVGLMVMQPFVGSAAIAYYASYIIAAADLSTDIGSISMAIIQ-----------------------------ASTI 175 (322)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-----------------------------~~~~ 175 (322)
+..+.........+++ +..-..|.|.++++.|.+....+.+-.+.- .+..
T Consensus 32 ~~li~v~~ia~Gvqf~-wA~elsy~tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~ 110 (498)
T KOG0637|consen 32 RKLISVASIAAGVQFG-WALELSYLTPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSL 110 (498)
T ss_pred HHHHHHHHHHHHHHHH-HHHHhccccHHHHHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhH
Confidence 4444445555555553 566677888888889988775444333221 2223
Q ss_pred HHHHHHHHHHHHHHhccCCCCC------CchhHHHHHHHHHHHHHHhhcccchhhhhhccccCccccch-hHHHHHHHHH
Q 042030 176 WMGLSLTIIALAFGLQDTHLWN------EATPVLVYVGIMGFSIAFALGMAGLPSVIMAEIFPINIKGS-AGSLVILLHN 248 (322)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~-~~~~~~~~~~ 248 (322)
...++.++++...-....-.++ .......++.+.+.-..-.....|. -++..|+.....|.+ +.+....+..
T Consensus 111 ~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~-ra~L~Dl~~~d~~~~~Ans~f~~f~a 189 (498)
T KOG0637|consen 111 LIAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPC-RALLADLARGDAKKTRANSVFSFFMA 189 (498)
T ss_pred HHHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhH-HHHHHHhccChhhhhccchhHHHHHH
Confidence 3333333333222111110011 1112223333334444443444555 788999998777777 8888888888
Q ss_pred HHHHHHHHHHH
Q 042030 249 CSNWIVTYTFH 259 (322)
Q Consensus 249 ~g~~~~~~~~~ 259 (322)
+|+.++-.+.+
T Consensus 190 vGnvLGY~~g~ 200 (498)
T KOG0637|consen 190 VGNVLGYALGS 200 (498)
T ss_pred hcceeeeeccc
Confidence 88776655443
No 268
>PRK03612 spermidine synthase; Provisional
Probab=75.71 E-value=62 Score=29.31 Aligned_cols=48 Identities=15% Similarity=0.088 Sum_probs=32.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHH--hhhcchhHHHHHHHHHHHHHH
Q 042030 237 GSAGSLVILLHNCSNWIVTYTFHFTME--WSRTGTFSIFWVICAAAVLFV 284 (322)
Q Consensus 237 ~~~~~~~~~~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 284 (322)
+...|-.+..+.+|+++|+.+.+.+.- .+.....++.+.+.++++++.
T Consensus 144 g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a~~~ 193 (521)
T PRK03612 144 GHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAALVF 193 (521)
T ss_pred hhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 566788888899999999998886654 454455555566555555433
No 269
>TIGR02978 phageshock_pspC phage shock protein C. All members of this protein family are the phage shock protein PspC. These proteins contain a PspC domain, as do other members of the larger family of proteins described by Pfam model pfam04024. The phage shock regulon is restricted to the Proteobacteria and somewhat sparsely distributed there. It is expressed, under positive control of a sigma-54-dependent transcription factor, PspF, which binds and is modulated by PspA. Stresses that induce the psp regulon include phage secretin overexpression, ethanol, heat shock, and protein export defects.
Probab=74.68 E-value=6.3 Score=27.41 Aligned_cols=27 Identities=19% Similarity=0.235 Sum_probs=15.4
Q ss_pred hHHHHHHhhHHH-----HHH-HHHhhccCCChH
Q 042030 42 WRALALIAAVPC-----LLQ-VVGLFFIPESPR 68 (322)
Q Consensus 42 Wr~~f~~~~~~~-----~i~-~~~~~~lpesp~ 68 (322)
.|.+|.+..+++ +++ +++++.+|+.|.
T Consensus 31 VRl~~vl~~~~~~~~~~ll~Y~i~w~~lp~~p~ 63 (121)
T TIGR02978 31 VRILVVSALLFGGGFFVLVAYIALWLLLDKKPI 63 (121)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcc
Confidence 677766654432 222 345677888774
No 270
>PF11151 DUF2929: Protein of unknown function (DUF2929); InterPro: IPR021324 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=74.44 E-value=15 Score=21.59 Aligned_cols=42 Identities=21% Similarity=0.245 Sum_probs=26.5
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHhhccCCCh
Q 042030 26 IVSGMSVMYLVGTIVSWRALALIAAVPCLLQVVGLFFIPESP 67 (322)
Q Consensus 26 ~~~G~~l~~~~~~~~~Wr~~f~~~~~~~~i~~~~~~~lpesp 67 (322)
..+|...+.+.+...+.+....++.+.+++...+...+|+.+
T Consensus 15 ~vvgyI~ssL~~~~~n~~~~~Ii~vi~~i~~~~~~~~i~~~~ 56 (57)
T PF11151_consen 15 EVVGYIGSSLTGVTYNFTTAAIIAVIFGIIVANIIAVIPKKS 56 (57)
T ss_pred HHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 344444444444555788887888888887776666666643
No 271
>COG3202 ATP/ADP translocase [Energy production and conversion]
Probab=73.93 E-value=65 Score=28.71 Aligned_cols=65 Identities=11% Similarity=0.096 Sum_probs=43.1
Q ss_pred eeeecCCCCchhhHHHHHHHHHHHHHHHHHhhhhh-h-------------hHHHHHHhhHHHHHHHHHhhc----cCCCh
Q 042030 6 IAEITPKNIRGAFTATSQFLIVSGMSVMYLVGTIV-S-------------WRALALIAAVPCLLQVVGLFF----IPESP 67 (322)
Q Consensus 6 i~e~~~~~~rg~~~~~~~~~~~~G~~l~~~~~~~~-~-------------Wr~~f~~~~~~~~i~~~~~~~----lpesp 67 (322)
.-|.+..++-.|..+.+..+.+++.++++.+...+ . -+..+.+.+..+++...+.++ +.+.|
T Consensus 173 aNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~~~~~~~~~~~~~~~~~~~vi~~~~~i~~~l~~~~~r~il~~~ 252 (509)
T COG3202 173 ANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSKHRDALASEFKDLLLQILFIVIVILGIIAILLYRYINRNVLTDP 252 (509)
T ss_pred HHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCc
Confidence 34677778889999999999999999988777665 2 334444555554554444333 45556
Q ss_pred HHH
Q 042030 68 RWL 70 (322)
Q Consensus 68 ~~l 70 (322)
++.
T Consensus 253 ~f~ 255 (509)
T COG3202 253 LFY 255 (509)
T ss_pred chh
Confidence 544
No 272
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=71.77 E-value=11 Score=32.32 Aligned_cols=58 Identities=17% Similarity=0.114 Sum_probs=42.4
Q ss_pred eeeeeecCCC---CchhhHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHhhHHHHHHHHHhh
Q 042030 4 IYIAEITPKN---IRGAFTATSQFLIVSGMSVMYLVGTIV----SWRALALIAAVPCLLQVVGLF 61 (322)
Q Consensus 4 ~~i~e~~~~~---~rg~~~~~~~~~~~~G~~l~~~~~~~~----~Wr~~f~~~~~~~~i~~~~~~ 61 (322)
.+.+|.++++ +|.....++..+.++|.+++..+..++ +|.+.|.+.++..++.++.+.
T Consensus 56 ~~~~dq~~~~~~~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~ 120 (372)
T PF00854_consen 56 PFGADQYDEDDDSRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFL 120 (372)
T ss_dssp HHHHHCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccchhhhhhhHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHH
Confidence 3455666654 456667778899999999998887776 799999998887776655443
No 273
>COG1422 Predicted membrane protein [Function unknown]
Probab=69.55 E-value=48 Score=25.31 Aligned_cols=26 Identities=19% Similarity=0.133 Sum_probs=11.5
Q ss_pred hhHHHHHHhhH-HHHHHHHHhhccCCC
Q 042030 41 SWRALALIAAV-PCLLQVVGLFFIPES 66 (322)
Q Consensus 41 ~Wr~~f~~~~~-~~~i~~~~~~~lpes 66 (322)
+-.+.-++.++ .++..-++..++-|-
T Consensus 45 ~p~lvilV~avi~gl~~~i~~~~liD~ 71 (201)
T COG1422 45 PPHLVILVAAVITGLYITILQKLLIDQ 71 (201)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhccH
Confidence 34444443333 344444555555443
No 274
>KOG3762 consensus Predicted transporter [General function prediction only]
Probab=66.19 E-value=7 Score=34.95 Aligned_cols=57 Identities=18% Similarity=0.115 Sum_probs=40.9
Q ss_pred ceeeeeecCCCCchhhHHHHHH-----HHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHH
Q 042030 3 PIYIAEITPKNIRGAFTATSQF-----LIVSGMSVMYLVGTIVSWRALALIAAVPCLLQVVG 59 (322)
Q Consensus 3 ~~~i~e~~~~~~rg~~~~~~~~-----~~~~G~~l~~~~~~~~~Wr~~f~~~~~~~~i~~~~ 59 (322)
.+|++...||+-|..+.++.+. +-++|.++|..+...++=|..|.+.++.+++.+++
T Consensus 481 ~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~ 542 (618)
T KOG3762|consen 481 ISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLAL 542 (618)
T ss_pred HHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHH
Confidence 4688899999999988888753 33556666665555568888888777776665444
No 275
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=65.63 E-value=5 Score=34.54 Aligned_cols=63 Identities=21% Similarity=0.195 Sum_probs=50.1
Q ss_pred eeeeeecCCCCchhhHHHHHHHHHHHHHHHHHhhhhh-----hhHHHHHHhhHHHHHHHHHhhccCCC
Q 042030 4 IYIAEITPKNIRGAFTATSQFLIVSGMSVMYLVGTIV-----SWRALALIAAVPCLLQVVGLFFIPES 66 (322)
Q Consensus 4 ~~i~e~~~~~~rg~~~~~~~~~~~~G~~l~~~~~~~~-----~Wr~~f~~~~~~~~i~~~~~~~lpes 66 (322)
+|.++..|+++-|+..+++.+..-.+..++|.+-..+ +=|.-+....++..+.++....+|+.
T Consensus 364 Sy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L~~v~~~ 431 (438)
T COG2270 364 SYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLLLRVKVP 431 (438)
T ss_pred HHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhEEeecCC
Confidence 4678899999999999999999999998888877665 67777766666666666677777764
No 276
>PF10183 ESSS: ESSS subunit of NADH:ubiquinone oxidoreductase (complex I) ; InterPro: IPR019329 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry represents the ESSS subunit from mitochondrial NADH:ubiquinone oxidoreductase (complex I). It carries mitochondrial import sequences [].
Probab=63.82 E-value=19 Score=24.38 Aligned_cols=27 Identities=19% Similarity=0.284 Sum_probs=20.5
Q ss_pred hhHHHHHHhhHHHHHH-HHHhhccCCCh
Q 042030 41 SWRALALIAAVPCLLQ-VVGLFFIPESP 67 (322)
Q Consensus 41 ~Wr~~f~~~~~~~~i~-~~~~~~lpesp 67 (322)
+|+.+|+++...+++. .+.+.+.||+.
T Consensus 58 ~we~~~f~~~~~~~v~~~~~~~y~PD~~ 85 (105)
T PF10183_consen 58 GWELPFFFGFSGSLVFGGVFLAYKPDTS 85 (105)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 7999999877776665 45567789875
No 277
>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]
Probab=62.21 E-value=1.1e+02 Score=26.70 Aligned_cols=21 Identities=5% Similarity=-0.021 Sum_probs=12.7
Q ss_pred hhhccchhhhHhcHHHHHHHc
Q 042030 136 MQPFVGSAAIAYYASYIIAAA 156 (322)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~ 156 (322)
.......+.+..-.+++.+..
T Consensus 28 iG~LlpWN~fiTa~~y~~~~~ 48 (406)
T KOG1479|consen 28 IGTLLPWNMFITASDYYYYRF 48 (406)
T ss_pred cccccchHhhhccHHHHHhhc
Confidence 333345666777777776665
No 278
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans. UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].
Probab=59.91 E-value=67 Score=23.60 Aligned_cols=57 Identities=9% Similarity=0.021 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHhhcccchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHH
Q 042030 202 VLVYVGIMGFSIAFALGMAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFH 259 (322)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~ 259 (322)
+..+....+.+.+.+. .+.....++.+...++.|++-.++.-.+...+.++|..+.-
T Consensus 90 ~~l~~~s~l~G~~~a~-lW~aqg~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~ 146 (156)
T PF05978_consen 90 YTLYPASALLGFGAAL-LWTAQGTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLF 146 (156)
T ss_pred HHHHHHHHHHhhhhHH-hhHhhhHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444333 33444667778777788888877777776666666655543
No 279
>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]
Probab=56.82 E-value=1.3e+02 Score=26.12 Aligned_cols=41 Identities=15% Similarity=0.158 Sum_probs=24.1
Q ss_pred HHhhc-ccchhhhhhccccCccccchhHHHHHHHHHHHHHHH
Q 042030 214 AFALG-MAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIV 254 (322)
Q Consensus 214 ~~~~~-~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~ 254 (322)
+++.| ..++...+.++..|++.+..+-.+....-..|-..|
T Consensus 354 glsnGYltsl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G 395 (406)
T KOG1479|consen 354 GLSNGYLTSLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALG 395 (406)
T ss_pred HhccchHhhheehhcCCCCChHHHHHHHHHHHHHHHHHHHHh
Confidence 33444 345667888888888887666555544444443333
No 280
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=55.62 E-value=57 Score=25.53 Aligned_cols=54 Identities=17% Similarity=0.145 Sum_probs=33.2
Q ss_pred HhhhhhhhHHHHHHhhHHHHHHHHHhhc--cCCChHHHHhcCCHHHHHHHHHHHhC
Q 042030 35 LVGTIVSWRALALIAAVPCLLQVVGLFF--IPESPRWLAKIGKEKELETTLQCLRG 88 (322)
Q Consensus 35 ~~~~~~~Wr~~f~~~~~~~~i~~~~~~~--lpesp~~l~~~~~~~~a~~~~~~~~~ 88 (322)
+++..+++.|.+.+.+++..+++.++.| --|..-|-...|+...+..+++.+++
T Consensus 44 ~ig~l~~~~~~~~i~gi~~g~l~am~vl~rra~ra~Y~qieGqpGAa~avL~~lr~ 99 (224)
T PF13829_consen 44 LIGLLFGSWWYWLIIGILLGLLAAMIVLSRRAQRAAYAQIEGQPGAAGAVLDNLRR 99 (224)
T ss_pred HHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHhhcC
Confidence 3344446667777777664444333322 34555566777888888888887765
No 281
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=54.98 E-value=38 Score=21.30 Aligned_cols=35 Identities=17% Similarity=0.321 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhh-hhHHHHHHhhHHHH
Q 042030 20 ATSQFLIVSGMSVMYLVGTIV-SWRALALIAAVPCL 54 (322)
Q Consensus 20 ~~~~~~~~~G~~l~~~~~~~~-~Wr~~f~~~~~~~~ 54 (322)
-+.+....++.+++.++|+.. +-+..+++.+.-.+
T Consensus 11 ~l~~~il~~~~iisfi~Gy~~q~~~~~~~~~~~g~~ 46 (76)
T PF06645_consen 11 KLMQYILIISAIISFIVGYITQSFSYTFYIYGAGVV 46 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666777766666 66776665444333
No 282
>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]
Probab=54.90 E-value=20 Score=29.76 Aligned_cols=35 Identities=9% Similarity=-0.053 Sum_probs=25.9
Q ss_pred hccccCccccchhHHHHHHHHHHHHHHHHHHHHHH
Q 042030 227 MAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFT 261 (322)
Q Consensus 227 ~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~ 261 (322)
+.+-.+++.|.-+++.+.....+|-.++.++.-++
T Consensus 367 i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalpl 401 (409)
T KOG3880|consen 367 IHKETEPDVREFAMSAVSISDSIGIFLAGLLALPL 401 (409)
T ss_pred HhhcCCchHHHHhHhhheecchhhHHHHHHHhccc
Confidence 44555778999999998888888877777665433
No 283
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=53.98 E-value=1.6e+02 Score=26.06 Aligned_cols=54 Identities=11% Similarity=-0.033 Sum_probs=36.5
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHH-hhhcchhHHHHHHHHHHHHHHHhh
Q 042030 234 NIKGSAGSLVILLHNCSNWIVTYTFHFTME-WSRTGTFSIFWVICAAAVLFVAFL 287 (322)
Q Consensus 234 ~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 287 (322)
..+....+...-+-.+...++|.+.+.+.+ .+......++++..+++...=+++
T Consensus 145 ~~La~~NA~mRRIDL~ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~vEy~~ 199 (432)
T PF06963_consen 145 GALARMNATMRRIDLFCKLLAPLFVGLLMTFASPVIAAIFIAGWNLASVFVEYFL 199 (432)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444455689999999999988 666666777777777776654443
No 284
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]
Probab=53.86 E-value=18 Score=29.12 Aligned_cols=54 Identities=26% Similarity=0.367 Sum_probs=38.2
Q ss_pred ceeeeeecCC-CCchhhHHHHHH-HHHHHHHHHHHhhhhh------hhHHHHHHhhHHHHHH
Q 042030 3 PIYIAEITPK-NIRGAFTATSQF-LIVSGMSVMYLVGTIV------SWRALALIAAVPCLLQ 56 (322)
Q Consensus 3 ~~~i~e~~~~-~~rg~~~~~~~~-~~~~G~~l~~~~~~~~------~Wr~~f~~~~~~~~i~ 56 (322)
.+++.|+.|+ ++|+...+.... ...+|..+++.++..+ +||+.|.+........
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (338)
T COG0477 116 SALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALLGLLL 177 (338)
T ss_pred HHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 3466788887 678888888888 5777888777665433 6999777666655443
No 285
>PF04281 Tom22: Mitochondrial import receptor subunit Tom22 ; InterPro: IPR005683 The mitochondrial protein translocase family, which is responsible for movement of nuclear encoded pre-proteins into mitochondria, is very complex with at least 19 components. These proteins include several chaperone proteins, four proteins of the outer membrane translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family represents the Tom22 proteins []. The N-terminal region of Tom22 has been shown to have chaperone-like activity, and the C-terminal region faces the intermembrane face []. ; GO: 0006886 intracellular protein transport, 0005741 mitochondrial outer membrane
Probab=52.41 E-value=36 Score=24.33 Aligned_cols=23 Identities=22% Similarity=0.372 Sum_probs=17.3
Q ss_pred hccccCccccchhHHHHHHHHHH
Q 042030 227 MAEIFPINIKGSAGSLVILLHNC 249 (322)
Q Consensus 227 ~~e~~p~~~r~~~~~~~~~~~~~ 249 (322)
+.|++|+..|....+..+...+.
T Consensus 60 Lkdi~P~~~R~~i~~~~~~~~~~ 82 (137)
T PF04281_consen 60 LKDIFPPSVRNWISSTVSTTSSA 82 (137)
T ss_pred HhccCCHHHHHHHHHHHHHHHHH
Confidence 56999999998887776654443
No 286
>PF08997 UCR_6-4kD: Ubiquinol-cytochrome C reductase complex, 6.4kD protein; InterPro: IPR015089 The ubiquinol-cytochrome C reductase complex (cytochrome bc1 complex) is an essential component of the mitochondrial cellular respiratory chain. This family represents the 6.4 kDa protein, which may be closely linked to the iron-sulphur protein in the complex and function as an iron-sulphur protein-binding factor []. ; GO: 0008121 ubiquinol-cytochrome-c reductase activity, 0009055 electron carrier activity; PDB: 1NTM_K 1SQV_K 1SQB_K 1NU1_K 1SQQ_K 1BE3_K 1BGY_W 2YBB_k 2FYU_K 1L0N_K ....
Probab=51.35 E-value=16 Score=21.32 Aligned_cols=38 Identities=5% Similarity=-0.049 Sum_probs=24.5
Q ss_pred ecCCCCchhhHHHHHHHHHHHHHHHHHhhhhhhhHHHH
Q 042030 9 ITPKNIRGAFTATSQFLIVSGMSVMYLVGTIVSWRALA 46 (322)
Q Consensus 9 ~~~~~~rg~~~~~~~~~~~~G~~l~~~~~~~~~Wr~~f 46 (322)
+..+++.-.+..+.......|..-+..+.+..+||.++
T Consensus 5 ~~G~k~~~lak~w~ps~~~~G~~~~l~lvy~TDWklIl 42 (56)
T PF08997_consen 5 LIGPKYIELAKNWIPSAAAWGAAGGLALVYFTDWKLIL 42 (56)
T ss_dssp G-SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred hhcHHHHHHHHHhchhHHHHhhhhhhheeeecchHhhh
Confidence 34455555666666666777776666666777888754
No 287
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=48.24 E-value=1e+02 Score=24.91 Aligned_cols=25 Identities=20% Similarity=0.130 Sum_probs=15.2
Q ss_pred hHHHHHHhhHHHHHHHHHhhccCCC
Q 042030 42 WRALALIAAVPCLLQVVGLFFIPES 66 (322)
Q Consensus 42 Wr~~f~~~~~~~~i~~~~~~~lpes 66 (322)
..++-+++..+.++...++.+++.+
T Consensus 114 ~~~Ln~~G~~l~~~~~~~f~fik~~ 138 (254)
T PF07857_consen 114 SPWLNYIGVALVLVSGIIFSFIKSE 138 (254)
T ss_pred hhHHHHHHHHHHHHHHHheeeecCC
Confidence 5555666666666666666665433
No 288
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=46.43 E-value=18 Score=29.82 Aligned_cols=58 Identities=16% Similarity=0.227 Sum_probs=41.9
Q ss_pred eeeeecCCCCchhhHHHHHHHHHHHHHHHHHhhhhh-------hhHHHHHH-hhHHHHHHHHHhhc
Q 042030 5 YIAEITPKNIRGAFTATSQFLIVSGMSVMYLVGTIV-------SWRALALI-AAVPCLLQVVGLFF 62 (322)
Q Consensus 5 ~i~e~~~~~~rg~~~~~~~~~~~~G~~l~~~~~~~~-------~Wr~~f~~-~~~~~~i~~~~~~~ 62 (322)
.++-..|+++-|.+.++.+.-.++|..+.+++++.+ .|--.|++ .+..++....+.+.
T Consensus 376 ~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~svgil~~ 441 (459)
T KOG4686|consen 376 CVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTSVGILFY 441 (459)
T ss_pred hhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHHHHHHhh
Confidence 345677899999999999999999999999998876 35545544 44445555444333
No 289
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=45.27 E-value=43 Score=26.95 Aligned_cols=27 Identities=19% Similarity=0.114 Sum_probs=17.6
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHHH
Q 042030 233 INIKGSAGSLVILLHNCSNWIVTYTFH 259 (322)
Q Consensus 233 ~~~r~~~~~~~~~~~~~g~~~~~~~~~ 259 (322)
+-.|..++|+...+....+.+..+..+
T Consensus 74 pii~~iGLglg~liW~s~n~l~Gw~~g 100 (254)
T PF07857_consen 74 PIIKTIGLGLGMLIWGSVNCLTGWASG 100 (254)
T ss_pred hHhhhhhhHHHHHHHHHHHHHHHHHHh
Confidence 345667777777777666666666654
No 290
>KOG3312 consensus Predicted membrane protein [Function unknown]
Probab=44.84 E-value=59 Score=23.30 Aligned_cols=33 Identities=3% Similarity=0.095 Sum_probs=18.6
Q ss_pred HHhhccCCChHHHHhcCCHHHHHHHHHHHhCCc
Q 042030 58 VGLFFIPESPRWLAKIGKEKELETTLQCLRGKT 90 (322)
Q Consensus 58 ~~~~~lpesp~~l~~~~~~~~a~~~~~~~~~~~ 90 (322)
+.|..+..+.+|-..+...|++.+-+++...++
T Consensus 25 itWvlvYRt~~Yk~LKa~vdK~sKKLE~~K~~~ 57 (186)
T KOG3312|consen 25 ITWVLVYRTDKYKRLKAEVDKQSKKLEKKKEEN 57 (186)
T ss_pred ceEEEEEehhHHHHHHHHHHHHHHHHHHHhhhc
Confidence 345556667666555555566555555544443
No 291
>TIGR00986 3a0801s05tom22 mitochondrial import receptor subunit Tom22. translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family is specific for the Tom22 proteins.
Probab=42.99 E-value=57 Score=23.43 Aligned_cols=22 Identities=18% Similarity=0.169 Sum_probs=16.4
Q ss_pred hccccCccccchhHHHHHHHHH
Q 042030 227 MAEIFPINIKGSAGSLVILLHN 248 (322)
Q Consensus 227 ~~e~~p~~~r~~~~~~~~~~~~ 248 (322)
+.|++|+..|....+..+....
T Consensus 58 LkDm~Pp~~R~~i~~~~s~t~s 79 (145)
T TIGR00986 58 LKDIVPPTTRGWIYHKYSTTTN 79 (145)
T ss_pred HHhhCCHHHHHHHHHHHHHHHH
Confidence 5699999999887776655444
No 292
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=40.67 E-value=1e+02 Score=20.86 Aligned_cols=34 Identities=12% Similarity=0.158 Sum_probs=17.2
Q ss_pred HHHHhcCCHHHHHHHHHHHhCCchhhhhhHHHHH
Q 042030 68 RWLAKIGKEKELETTLQCLRGKTADISMESADIR 101 (322)
Q Consensus 68 ~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 101 (322)
++...+.+.++.+..+.++...+.....+.+.++
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~ 61 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLK 61 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4444445555555555555555544444444443
No 293
>COG3462 Predicted membrane protein [Function unknown]
Probab=40.57 E-value=65 Score=21.74 Aligned_cols=24 Identities=21% Similarity=0.029 Sum_probs=13.0
Q ss_pred HHHHHHHHHHhCCchhhhhhHHHH
Q 042030 77 KELETTLQCLRGKTADISMESADI 100 (322)
Q Consensus 77 ~~a~~~~~~~~~~~~~~~~~~~~~ 100 (322)
++|+.+++.-..+....++|+...
T Consensus 88 sRA~eIlkER~AkGEItEEEY~r~ 111 (117)
T COG3462 88 SRAEEILKERYAKGEITEEEYRRI 111 (117)
T ss_pred cHHHHHHHHHHhcCCCCHHHHHHH
Confidence 566667665555443444454443
No 294
>PF04024 PspC: PspC domain; InterPro: IPR007168 This domain is found in Phage shock protein C (PspC) that is thought to be a transcriptional regulator. The presumed domain is 60 amino acid residues in length.
Probab=39.08 E-value=49 Score=19.75 Aligned_cols=27 Identities=15% Similarity=0.344 Sum_probs=16.5
Q ss_pred hhHHHHHHhhHHH---HHH-HHHhhccCCCh
Q 042030 41 SWRALALIAAVPC---LLQ-VVGLFFIPESP 67 (322)
Q Consensus 41 ~Wr~~f~~~~~~~---~i~-~~~~~~lpesp 67 (322)
-+|..|.+..+.. ++. +++++.+|+.|
T Consensus 30 ~vRl~~v~l~~~~~~~~l~Y~~~w~~lP~~~ 60 (61)
T PF04024_consen 30 LVRLIFVVLTFFTGGGILLYLILWLLLPKEP 60 (61)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHcCCCC
Confidence 3788887766542 233 34467788875
No 295
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=39.05 E-value=2.8e+02 Score=24.59 Aligned_cols=11 Identities=18% Similarity=0.371 Sum_probs=6.0
Q ss_pred hhhhccccCccc
Q 042030 224 SVIMAEIFPINI 235 (322)
Q Consensus 224 ~~~~~e~~p~~~ 235 (322)
..+.+ .+|++.
T Consensus 128 ~gla~-~fp~~~ 138 (437)
T TIGR00939 128 FGLAG-VFPSTY 138 (437)
T ss_pred hhhcc-cCCHHH
Confidence 45444 667654
No 296
>PF15050 SCIMP: SCIMP protein
Probab=38.71 E-value=22 Score=24.29 Aligned_cols=41 Identities=24% Similarity=0.343 Sum_probs=19.6
Q ss_pred hHHHHHHhhHHHHHHH--HHhhccCCChHHHHhcCCHHHHHHH
Q 042030 42 WRALALIAAVPCLLQV--VGLFFIPESPRWLAKIGKEKELETT 82 (322)
Q Consensus 42 Wr~~f~~~~~~~~i~~--~~~~~lpesp~~l~~~~~~~~a~~~ 82 (322)
||--||+....+++.. .+-+.+-=--||+.++|+.-+..+.
T Consensus 4 Wr~nFWiiLAVaII~vS~~lglIlyCvcR~~lRqGkkweiakp 46 (133)
T PF15050_consen 4 WRDNFWIILAVAIILVSVVLGLILYCVCRWQLRQGKKWEIAKP 46 (133)
T ss_pred HHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccceeccc
Confidence 7777766544443331 1111111124677777766554433
No 297
>COG1288 Predicted membrane protein [Function unknown]
Probab=37.96 E-value=2.1e+02 Score=25.29 Aligned_cols=28 Identities=11% Similarity=0.052 Sum_probs=17.9
Q ss_pred hhHHHHHHhhHHHHHHHHHh--hccCCChH
Q 042030 41 SWRALALIAAVPCLLQVVGL--FFIPESPR 68 (322)
Q Consensus 41 ~Wr~~f~~~~~~~~i~~~~~--~~lpesp~ 68 (322)
+||.+.++......+..+.+ ..+++.|.
T Consensus 217 ~~Riv~~v~~~~~~i~y~~~Ya~KvkkdP~ 246 (481)
T COG1288 217 GLRIVVWVVFTLISIIYVYWYASKVKKDPT 246 (481)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 79999998776655554433 44655554
No 298
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=37.81 E-value=2.8e+02 Score=24.33 Aligned_cols=40 Identities=5% Similarity=-0.063 Sum_probs=26.6
Q ss_pred hhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 042030 224 SVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTME 263 (322)
Q Consensus 224 ~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~ 263 (322)
++|+=-..|++.=.++.+.+.+..-+|..++..+...+..
T Consensus 115 ~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs 154 (412)
T PF01770_consen 115 YSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVS 154 (412)
T ss_pred HHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445566655677777777777777777777766666
No 299
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=36.94 E-value=1.7e+02 Score=21.48 Aligned_cols=40 Identities=20% Similarity=0.232 Sum_probs=27.7
Q ss_pred HHhhcccchhhhhhccccCccccchhHHHHHHHHHHHHHH
Q 042030 214 AFALGMAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWI 253 (322)
Q Consensus 214 ~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~ 253 (322)
+|+.+...+.|-..+-.-.++..|+..|+-.+-.+++-..
T Consensus 106 ~Fg~gllGisYGilSaSWD~~r~GSllG~~e~~~N~~r~~ 145 (153)
T PF11947_consen 106 FFGLGLLGISYGILSASWDPEREGSLLGWEEFKRNWGRMW 145 (153)
T ss_pred HHHHHHHhhhhhhcccccCCCCCCCcccHHHHHHhHHHHH
Confidence 3444444555667777777787899999988877776543
No 300
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=36.91 E-value=15 Score=26.00 Aligned_cols=17 Identities=12% Similarity=0.100 Sum_probs=9.4
Q ss_pred HHHHHHhhHHHHHHHHH
Q 042030 43 RALALIAAVPCLLQVVG 59 (322)
Q Consensus 43 r~~f~~~~~~~~i~~~~ 59 (322)
||++++..++.++++++
T Consensus 1 RW~l~~iii~~i~l~~~ 17 (130)
T PF12273_consen 1 RWVLFAIIIVAILLFLF 17 (130)
T ss_pred CeeeHHHHHHHHHHHHH
Confidence 67666655555544443
No 301
>PF01405 PsbT: Photosystem II reaction centre T protein; InterPro: IPR001743 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbT found in PSII, which is thought to be associated with the D1 (PsbA) - D2 (PsbD) heterodimer. PsbT may be involved in the formation and/or stabilisation of dimeric PSII complexes, because in the absence of this protein dimeric PSII complexes were found to be less abundant. Furthermore, although PsbT does not confer photo-protection, it is required for the efficient recovery of photo-damaged PSII [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3BZ1_T 1S5L_t 2AXT_t 3KZI_T 3PRQ_T 3BZ2_T 3PRR_T 4FBY_g 3A0H_t 3A0B_T ....
Probab=35.99 E-value=59 Score=15.98 Aligned_cols=10 Identities=40% Similarity=0.600 Sum_probs=3.6
Q ss_pred HhhccCCChH
Q 042030 59 GLFFIPESPR 68 (322)
Q Consensus 59 ~~~~lpesp~ 68 (322)
+..+.+|+||
T Consensus 19 fAI~FRePPr 28 (29)
T PF01405_consen 19 FAIFFREPPR 28 (29)
T ss_dssp HHHHSS----
T ss_pred hhhhccCCCC
Confidence 3456788886
No 302
>PF10066 DUF2304: Uncharacterized conserved protein (DUF2304); InterPro: IPR019277 This entry represents hypothetical archaeal and bacterial proteins that have no known function.
Probab=35.47 E-value=1.2e+02 Score=20.86 Aligned_cols=13 Identities=8% Similarity=0.064 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHH
Q 042030 251 NWIVTYTFHFTME 263 (322)
Q Consensus 251 ~~~~~~~~~~~~~ 263 (322)
..+-|-+...+.+
T Consensus 46 ~~ifP~~~~~vA~ 58 (115)
T PF10066_consen 46 LSIFPNILDWVAK 58 (115)
T ss_pred HHhhhhHHHHHHH
Confidence 3334444444444
No 303
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=35.28 E-value=11 Score=30.34 Aligned_cols=15 Identities=7% Similarity=0.244 Sum_probs=0.0
Q ss_pred HHHHHHhhccCCCCC
Q 042030 280 AVLFVAFLVPETKGR 294 (322)
Q Consensus 280 ~~~~~~~~~~et~~~ 294 (322)
.++++|+++.++++.
T Consensus 177 laiLIWlY~H~~~~~ 191 (381)
T PF05297_consen 177 LAILIWLYVHDQRHA 191 (381)
T ss_dssp ---------------
T ss_pred HHHHHHHHhcCCCCC
Confidence 345567778777643
No 304
>PF15061 DUF4538: Domain of unknown function (DUF4538)
Probab=35.25 E-value=36 Score=20.01 Aligned_cols=19 Identities=16% Similarity=0.330 Sum_probs=16.0
Q ss_pred hhHHHHHHhhHHHHHHHHH
Q 042030 41 SWRALALIAAVPCLLQVVG 59 (322)
Q Consensus 41 ~Wr~~f~~~~~~~~i~~~~ 59 (322)
|||...+++++.+++.+.+
T Consensus 4 g~r~~~~~ggfVg~iG~a~ 22 (58)
T PF15061_consen 4 GWRYALFVGGFVGLIGAAL 22 (58)
T ss_pred cccchhhHHHHHHHHHHHH
Confidence 7999999999998887644
No 305
>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]
Probab=33.81 E-value=80 Score=27.01 Aligned_cols=40 Identities=0% Similarity=-0.096 Sum_probs=28.5
Q ss_pred hhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 042030 224 SVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTME 263 (322)
Q Consensus 224 ~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~ 263 (322)
++|+=+..+++.+..+.|-+.+..-.|-..+..+...+.+
T Consensus 116 ysYIYs~Vd~~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs 155 (433)
T KOG3810|consen 116 YSYIYSKVDPEMYKRVTGYCRAAFLVGKFVGSVLAQLLVS 155 (433)
T ss_pred hheeeeecCHHHHHHHHHHhHHHHHHHhHHHhHHHHHHhh
Confidence 5556666788888888888877777777777666665555
No 306
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=32.65 E-value=1e+02 Score=19.44 Aligned_cols=26 Identities=19% Similarity=0.179 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHhCCchhhhhhHHHHH
Q 042030 76 EKELETTLQCLRGKTADISMESADIR 101 (322)
Q Consensus 76 ~~~a~~~~~~~~~~~~~~~~~~~~~~ 101 (322)
.++.++.++++.......++..+.++
T Consensus 37 s~~d~~~L~~L~~~a~rm~eRI~tLE 62 (75)
T PF06667_consen 37 SEEDEQRLQELYEQAERMEERIETLE 62 (75)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555444434444333333
No 307
>PRK09458 pspB phage shock protein B; Provisional
Probab=32.38 E-value=1.3e+02 Score=18.88 Aligned_cols=31 Identities=13% Similarity=0.098 Sum_probs=12.1
Q ss_pred HHhhccCCChHHHHhcCCHHHHHHHHHHHhC
Q 042030 58 VGLFFIPESPRWLAKIGKEKELETTLQCLRG 88 (322)
Q Consensus 58 ~~~~~lpesp~~l~~~~~~~~a~~~~~~~~~ 88 (322)
.+++++.=..+|-..++-.++.+..++++..
T Consensus 19 PiWL~LHY~sk~~~~~~Ls~~d~~~L~~L~~ 49 (75)
T PRK09458 19 PIWLWLHYRSKRQGSQGLSQEEQQRLAQLTE 49 (75)
T ss_pred HHHHHHhhcccccCCCCCCHHHHHHHHHHHH
Confidence 3444554333332233333333444444433
No 308
>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters. Note that many members are hypothetical proteins.
Probab=31.69 E-value=1.5e+02 Score=19.22 Aligned_cols=41 Identities=15% Similarity=-0.013 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHhhHHHHHHHHH
Q 042030 19 TATSQFLIVSGMSVMYLVGTIV----SWRALALIAAVPCLLQVVG 59 (322)
Q Consensus 19 ~~~~~~~~~~G~~l~~~~~~~~----~Wr~~f~~~~~~~~i~~~~ 59 (322)
.+.......+|+++|.+.+... ..|..+..+.+.+.+....
T Consensus 29 ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 73 (85)
T PF06779_consen 29 AGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAA 73 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 4455566667777777666554 3444555555554444433
No 309
>KOG3796 consensus Ammonium transporter RHBG [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=31.66 E-value=2.3e+02 Score=24.26 Aligned_cols=68 Identities=13% Similarity=0.164 Sum_probs=38.3
Q ss_pred hhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH--hhhcchhHHHHHHHHHHHHHHHhhccCC
Q 042030 224 SVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTME--WSRTGTFSIFWVICAAAVLFVAFLVPET 291 (322)
Q Consensus 224 ~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~et 291 (322)
--++.+++..+.-+..+.+-.+..++|-.++-.+.....+ ..........-.+..++.++.|.+.|.-
T Consensus 161 e~v~~n~~~v~d~g~smtih~FgAYFGLavA~~l~k~~~~~~~~~~gs~y~sdLfAMIGtlFLWmfWPSF 230 (442)
T KOG3796|consen 161 EMVISNIFNVNDHGGSMTIHAFGAYFGLAVAWCLYKPNLEGTTENEGSAYHSDLFAMIGTLFLWMFWPSF 230 (442)
T ss_pred HHHHHHhccccccCCceEEEehhhhhhhhHhhhccCccccccccccCceecchHHHHHHHHHHHHhcccc
Confidence 4556677777666666655555555555555444433332 1212333444556677778888887753
No 310
>PRK11875 psbT photosystem II reaction center protein T; Reviewed
Probab=29.65 E-value=83 Score=15.70 Aligned_cols=10 Identities=10% Similarity=0.195 Sum_probs=6.8
Q ss_pred HhhccCCChH
Q 042030 59 GLFFIPESPR 68 (322)
Q Consensus 59 ~~~~lpesp~ 68 (322)
+..+.+|+||
T Consensus 19 FAIfFRepPr 28 (31)
T PRK11875 19 FAIAFRDPPK 28 (31)
T ss_pred HhhhccCCCC
Confidence 3456788886
No 311
>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]. This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane
Probab=29.53 E-value=1.7e+02 Score=26.40 Aligned_cols=32 Identities=9% Similarity=0.060 Sum_probs=16.2
Q ss_pred ccCccccchhHHHHHHHHHHHHHHHHHHHHHH
Q 042030 230 IFPINIKGSAGSLVILLHNCSNWIVTYTFHFT 261 (322)
Q Consensus 230 ~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~ 261 (322)
+..++.++-|........++|-+++-.++-.+
T Consensus 146 ~Ls~~n~~~ASTcqtvG~~~Gyfls~tvFlal 177 (544)
T PF13000_consen 146 MLSPENVGYASTCQTVGQTAGYFLSFTVFLAL 177 (544)
T ss_pred hcChhhcchHHHHHHhHhhhhHHHHHHHHHhh
Confidence 44455566665544444445555554444333
No 312
>COG1422 Predicted membrane protein [Function unknown]
Probab=29.23 E-value=1.2e+02 Score=23.36 Aligned_cols=6 Identities=17% Similarity=-0.025 Sum_probs=2.2
Q ss_pred hHHHHH
Q 042030 270 FSIFWV 275 (322)
Q Consensus 270 ~~~~~~ 275 (322)
.++.++
T Consensus 50 ilV~av 55 (201)
T COG1422 50 ILVAAV 55 (201)
T ss_pred HHHHHH
Confidence 333333
No 313
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=28.99 E-value=1.2e+02 Score=25.80 Aligned_cols=28 Identities=0% Similarity=-0.255 Sum_probs=18.9
Q ss_pred HHHHHHHHHhhhhccchhhhHhcHHHHH
Q 042030 126 SLSVGVGLMVMQPFVGSAAIAYYASYII 153 (322)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (322)
+++.....+.+.....+..+..|.|.+-
T Consensus 245 ril~LG~~qslFE~smy~FVflWtPaL~ 272 (354)
T PF05631_consen 245 RILLLGLIQSLFEGSMYLFVFLWTPALD 272 (354)
T ss_pred hhHHHHHHHHHHHHHHHHheeeeeceec
Confidence 4445555566666666777788889876
No 314
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=28.57 E-value=5.1e+02 Score=24.51 Aligned_cols=56 Identities=14% Similarity=0.221 Sum_probs=37.8
Q ss_pred eeeeeecCCC---CchhhHHHHHHHHHHHHHHHHHhhhhh-----------hhHHHHHHhhHHHHHHHHH
Q 042030 4 IYIAEITPKN---IRGAFTATSQFLIVSGMSVMYLVGTIV-----------SWRALALIAAVPCLLQVVG 59 (322)
Q Consensus 4 ~~i~e~~~~~---~rg~~~~~~~~~~~~G~~l~~~~~~~~-----------~Wr~~f~~~~~~~~i~~~~ 59 (322)
+..+|.++++ +|-....++..+.++|.+++..+...+ +|...|.+.++..++.++.
T Consensus 108 af~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lv 177 (654)
T TIGR00926 108 AFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIV 177 (654)
T ss_pred hhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHH
Confidence 3445666543 355667777778888888877665433 4999999888877666544
No 315
>PF01277 Oleosin: Oleosin; InterPro: IPR000136 Oleosins [] are the proteinaceous components of plants' lipid storage bodies called oil bodies. Oil bodies are small droplets (0.2 to 1.5 mu-m in diameter) containing mostly triacylglycerol that are surrounded by a phospholipid/ oleosin annulus. Oleosins may have a structural role in stabilising the lipid body during dessication of the seed, by preventing coalescence of the oil. They may also provide recognition signals for specific lipase anchorage in lipolysis during seedling growth. Oleosins are found in the monolayer lipid/ water interface of oil bodies and probably interact with both the lipid and phospholipid moieties. Oleosins are proteins of 16 Kd to 24 Kd and are composed of three domains: an N-terminal hydrophilic region of variable length (from 30 to 60 residues); a central hydrophobic domain of about 70 residues and a C-terminal amphipathic region of variable length (from 60 to 100 residues). The central hydrophobic domain is proposed to be made up of beta-strand structure and to interact with the lipids []. It is the only domain whose sequence is conserved.; GO: 0012511 monolayer-surrounded lipid storage body, 0016021 integral to membrane
Probab=28.12 E-value=44 Score=23.10 Aligned_cols=9 Identities=0% Similarity=-0.271 Sum_probs=4.0
Q ss_pred HHHHHHHHH
Q 042030 252 WIVTYTFHF 260 (322)
Q Consensus 252 ~~~~~~~~~ 260 (322)
+++|.+.|.
T Consensus 42 ifSPVlVPa 50 (118)
T PF01277_consen 42 IFSPVLVPA 50 (118)
T ss_pred HHhhHHHHH
Confidence 344444443
No 316
>CHL00031 psbT photosystem II protein T
Probab=27.83 E-value=94 Score=15.79 Aligned_cols=10 Identities=30% Similarity=0.534 Sum_probs=7.2
Q ss_pred HhhccCCChH
Q 042030 59 GLFFIPESPR 68 (322)
Q Consensus 59 ~~~~lpesp~ 68 (322)
+..+.+|+||
T Consensus 19 FAI~FRePPr 28 (33)
T CHL00031 19 FAIFFREPPK 28 (33)
T ss_pred HhheecCCCC
Confidence 3466789887
No 317
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=26.63 E-value=2.7e+02 Score=23.85 Aligned_cols=27 Identities=15% Similarity=0.015 Sum_probs=11.9
Q ss_pred CccccchhHHHHHHHHHHHHHHHHHHHH
Q 042030 232 PINIKGSAGSLVILLHNCSNWIVTYTFH 259 (322)
Q Consensus 232 p~~~r~~~~~~~~~~~~~g~~~~~~~~~ 259 (322)
|.+.|+... .+...++.+..--|.+..
T Consensus 90 ~~~~~~~~~-~~~~~~N~~~lglpi~~~ 116 (385)
T PF03547_consen 90 PKEWRGVFV-LAASFGNTGFLGLPILQA 116 (385)
T ss_pred CcccceEEE-ecccCCcchhhHHHHHHH
Confidence 444444332 333445555544454443
No 318
>KOG2881 consensus Predicted membrane protein [Function unknown]
Probab=26.45 E-value=2.4e+02 Score=22.83 Aligned_cols=72 Identities=13% Similarity=0.099 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhccCCCCCChhHHHHHHHhhhhhhccCCCCc
Q 042030 238 SAGSLVILLHNCSNWIVTYTFHFTMEWSRTGTFSIFWVICAAAVLFVAFLVPETKGRHSKKFKYQLQSINKFYNRTPHLS 317 (322)
Q Consensus 238 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~et~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (322)
.+.++.....-..+-.+|.+.+....+. .-..+..++.+..+.|-...+..+.++++++-+.....+.+..
T Consensus 107 ~AL~lMTiLS~~lG~aap~lipr~~T~~---------~~t~LF~iFGlkmL~eg~~~~~~~~~eE~eEVe~el~~~~~~~ 177 (294)
T KOG2881|consen 107 SALALMTILSVLLGWAAPNLIPRKYTYY---------LATALFLIFGLKMLKEGWEMSPSEGQEELEEVEAELAKREDEL 177 (294)
T ss_pred HHHHHHHHHHHHHHHhhhhhchHHHHHH---------HHHHHHHHHHHHHHHHhhcCCCccchhhHHHHHHHHHhccchh
Q ss_pred c
Q 042030 318 K 318 (322)
Q Consensus 318 ~ 318 (322)
+
T Consensus 178 ~ 178 (294)
T KOG2881|consen 178 D 178 (294)
T ss_pred h
No 319
>PF14715 FixP_N: N-terminal domain of cytochrome oxidase-cbb3, FixP
Probab=26.19 E-value=1.4e+02 Score=17.14 Aligned_cols=24 Identities=17% Similarity=-0.124 Sum_probs=16.6
Q ss_pred hhHHHHHHhhHHHHHHHHHhhccC
Q 042030 41 SWRALALIAAVPCLLQVVGLFFIP 64 (322)
Q Consensus 41 ~Wr~~f~~~~~~~~i~~~~~~~lp 64 (322)
.|.+.|+...+.+++-+++.-.++
T Consensus 23 ww~~~f~~tivfa~~Y~~~yp~~~ 46 (51)
T PF14715_consen 23 WWLWLFYGTIVFAVGYLVLYPGLG 46 (51)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccC
Confidence 488888888888777666543333
No 320
>PF14012 DUF4229: Protein of unknown function (DUF4229)
Probab=25.60 E-value=1.7e+02 Score=18.00 Aligned_cols=47 Identities=6% Similarity=0.075 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH--hhhcchhHHHHHH-HHHHHHHHHhhccC
Q 042030 244 ILLHNCSNWIVTYTFHFTME--WSRTGTFSIFWVI-CAAAVLFVAFLVPE 290 (322)
Q Consensus 244 ~~~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~e 290 (322)
++..+++-+++....-+... .+...+......+ .+++..+.+++.+.
T Consensus 4 Ytl~Rl~lfv~~~~vi~~v~~~~~~~~p~~~~~l~A~vis~~lS~~ll~~ 53 (69)
T PF14012_consen 4 YTLARLGLFVVLFAVIWLVGLLIGVEVPLLVAALLALVISMPLSYVLLRR 53 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556665555554443333 2212233333333 33344455555544
No 321
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=25.37 E-value=1.7e+02 Score=18.46 Aligned_cols=8 Identities=38% Similarity=0.239 Sum_probs=3.1
Q ss_pred HHHHHHhC
Q 042030 81 TTLQCLRG 88 (322)
Q Consensus 81 ~~~~~~~~ 88 (322)
..++++..
T Consensus 42 ~~L~~L~~ 49 (75)
T TIGR02976 42 ALLQELYA 49 (75)
T ss_pred HHHHHHHH
Confidence 33444433
No 322
>PF10183 ESSS: ESSS subunit of NADH:ubiquinone oxidoreductase (complex I) ; InterPro: IPR019329 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry represents the ESSS subunit from mitochondrial NADH:ubiquinone oxidoreductase (complex I). It carries mitochondrial import sequences [].
Probab=23.92 E-value=1.9e+02 Score=19.60 Aligned_cols=32 Identities=9% Similarity=-0.186 Sum_probs=19.2
Q ss_pred hhhcchhHHHHHHHHHHHHHHHhhccCCCCCC
Q 042030 264 WSRTGTFSIFWVICAAAVLFVAFLVPETKGRH 295 (322)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~et~~~~ 295 (322)
.++..++++...++++.+.+.+.+.|++.-++
T Consensus 57 e~we~~~f~~~~~~~v~~~~~~~y~PD~~i~~ 88 (105)
T PF10183_consen 57 EGWELPFFFGFSGSLVFGGVFLAYKPDTSIQT 88 (105)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHcCCCCCHHH
Confidence 44555555555555555555667789886544
No 323
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=23.43 E-value=1.6e+02 Score=18.24 Aligned_cols=18 Identities=17% Similarity=0.196 Sum_probs=9.8
Q ss_pred HHHHHHHHHhhccCCCCC
Q 042030 277 CAAAVLFVAFLVPETKGR 294 (322)
Q Consensus 277 ~~~~~~~~~~~~~et~~~ 294 (322)
.++++++.+++-|+..++
T Consensus 9 a~~Ga~~glL~aP~sG~e 26 (74)
T PF12732_consen 9 AAAGAAAGLLFAPKSGKE 26 (74)
T ss_pred HHHHHHHHHHhCCCCcHH
Confidence 334455566667765433
No 324
>PF13721 SecD-TM1: SecD export protein N-terminal TM region
Probab=23.43 E-value=1.3e+02 Score=20.19 Aligned_cols=28 Identities=14% Similarity=0.145 Sum_probs=17.0
Q ss_pred hhHHHHHHhhHHHHHHHHHhhccCCChH
Q 042030 41 SWRALALIAAVPCLLQVVGLFFIPESPR 68 (322)
Q Consensus 41 ~Wr~~f~~~~~~~~i~~~~~~~lpesp~ 68 (322)
-|+++.++..+...+...+--+.+|.|.
T Consensus 6 ~WKyllil~vl~~~~lyALPnlyge~pA 33 (101)
T PF13721_consen 6 LWKYLLILVVLLLGALYALPNLYGEDPA 33 (101)
T ss_pred hHHHHHHHHHHHHHHHHHhhhccCCCCc
Confidence 4888876654444444444566788775
No 325
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=22.13 E-value=87 Score=18.69 Aligned_cols=12 Identities=25% Similarity=0.260 Sum_probs=6.0
Q ss_pred HHhhccCCCCCC
Q 042030 284 VAFLVPETKGRH 295 (322)
Q Consensus 284 ~~~~~~et~~~~ 295 (322)
.+.+.|+.|++.
T Consensus 27 ~~ayr~~~K~~~ 38 (60)
T COG4736 27 YFAYRPGKKGEF 38 (60)
T ss_pred HHHhcccchhhH
Confidence 445556554443
No 326
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=21.42 E-value=2.7e+02 Score=18.75 Aligned_cols=26 Identities=27% Similarity=0.291 Sum_probs=12.4
Q ss_pred HHHHHHHHHhhhhh--------hhHHHHHHhhHH
Q 042030 27 VSGMSVMYLVGTIV--------SWRALALIAAVP 52 (322)
Q Consensus 27 ~~G~~l~~~~~~~~--------~Wr~~f~~~~~~ 52 (322)
.+..++|..++.++ .|-.+|++.++.
T Consensus 53 v~pil~G~~lG~WLD~~~~t~~~~tl~~lllGv~ 86 (100)
T TIGR02230 53 AIPTLLGVAVGIWLDRHYPSPFSWTLTMLIVGVV 86 (100)
T ss_pred HHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHH
Confidence 33444455555554 255555554443
No 327
>PF11511 RhodobacterPufX: Intrinsic membrane protein PufX; InterPro: IPR020169 PufX organises RC-LH1, the photosynthesis reaction centre-light harvesting complex 1 core complex of Rhodobacter sphaeroides []. It also facilitates the exchange of quinol for quinone between the reaction centre and cytochrome bc(1) complexes. In organic solvent, PufX contains two hydrophobic helices which are flanked by unstructured regions and connected by a helical bend [].; PDB: 2DW3_A 2ITA_A 2NRG_A.
Probab=21.31 E-value=2.1e+02 Score=17.49 Aligned_cols=18 Identities=28% Similarity=0.586 Sum_probs=9.3
Q ss_pred HHHHHHHHHhhccCCCCC
Q 042030 277 CAAAVLFVAFLVPETKGR 294 (322)
Q Consensus 277 ~~~~~~~~~~~~~et~~~ 294 (322)
.+++.-.+-..+||..+.
T Consensus 41 ~l~~~~~iG~~LPe~s~~ 58 (67)
T PF11511_consen 41 LLVALYFIGLLLPERSRQ 58 (67)
T ss_dssp HHHHHHHHHHSSTTTCSS
T ss_pred HHHHHHHHHHhCchhccc
Confidence 333333344568886544
No 328
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=20.80 E-value=90 Score=17.48 Aligned_cols=11 Identities=9% Similarity=0.102 Sum_probs=5.1
Q ss_pred HHHHHhhccCC
Q 042030 281 VLFVAFLVPET 291 (322)
Q Consensus 281 ~~~~~~~~~et 291 (322)
+++.+.+.|..
T Consensus 24 gi~~w~~~~~~ 34 (49)
T PF05545_consen 24 GIVIWAYRPRN 34 (49)
T ss_pred HHHHHHHcccc
Confidence 34455555543
No 329
>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]
Probab=20.44 E-value=6e+02 Score=22.47 Aligned_cols=33 Identities=12% Similarity=0.026 Sum_probs=17.5
Q ss_pred HHHHHHHHHhhhhccchhhhHhcHHHHHHHcCCCc
Q 042030 126 SLSVGVGLMVMQPFVGSAAIAYYASYIIAAADLST 160 (322)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 160 (322)
.++...++. ..|... ++...-.|.+++..|.+-
T Consensus 32 ~illLl~LY-llQGiP-~GL~~~iP~lL~ak~vSy 64 (510)
T KOG3574|consen 32 SILLLLFLY-LLQGIP-LGLIGAIPLLLQAKGVSY 64 (510)
T ss_pred hHHHHHHHH-HHcCCc-hhHhhhhHHHhcCCCcch
Confidence 344433443 334433 344448899888655543
No 330
>PRK03612 spermidine synthase; Provisional
Probab=20.16 E-value=2.6e+02 Score=25.50 Aligned_cols=41 Identities=24% Similarity=0.068 Sum_probs=21.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhhh-----h-hHHHHHHhhHHHHHH
Q 042030 16 GAFTATSQFLIVSGMSVMYLVGTIV-----S-WRALALIAAVPCLLQ 56 (322)
Q Consensus 16 g~~~~~~~~~~~~G~~l~~~~~~~~-----~-Wr~~f~~~~~~~~i~ 56 (322)
|...+-......+|.++|.++..++ | ++..+.++++..++.
T Consensus 144 g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a 190 (521)
T PRK03612 144 GHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAA 190 (521)
T ss_pred hhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 4555666666666666666655443 3 455555444433333
Done!