Query 042030
Match_columns 322
No_of_seqs 313 out of 1185
Neff 11.5
Searched_HMMs 29240
Date Mon Mar 25 23:00:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042030.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042030hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 100.0 2.5E-34 8.4E-39 251.8 23.3 296 2-310 147-485 (491)
2 1pw4_A Glycerol-3-phosphate tr 99.8 9.1E-20 3.1E-24 157.6 9.7 264 3-287 141-433 (451)
3 3o7q_A L-fucose-proton symport 99.7 1.3E-15 4.5E-20 131.1 21.5 231 3-279 139-424 (438)
4 4aps_A DI-OR tripeptide H+ sym 99.6 2E-15 6.8E-20 131.9 12.2 76 219-294 403-478 (491)
5 2gfp_A EMRD, multidrug resista 99.6 1.3E-15 4.4E-20 128.4 4.2 219 3-265 110-353 (375)
6 2xut_A Proton/peptide symporte 99.4 2.4E-12 8.3E-17 113.3 13.4 78 219-296 422-511 (524)
7 2cfq_A Lactose permease; trans 99.4 1.3E-13 4.5E-18 117.8 4.1 76 221-296 331-408 (417)
8 1pw4_A Glycerol-3-phosphate tr 98.8 1.8E-08 6.3E-13 86.6 10.3 75 219-293 136-212 (451)
9 3o7q_A L-fucose-proton symport 98.7 8.1E-07 2.8E-11 76.0 16.3 117 141-262 41-177 (438)
10 2gfp_A EMRD, multidrug resista 98.5 6.7E-07 2.3E-11 74.9 10.4 75 219-293 105-180 (375)
11 4aps_A DI-OR tripeptide H+ sym 98.4 3.3E-06 1.1E-10 73.4 12.5 71 219-289 125-198 (491)
12 2xut_A Proton/peptide symporte 98.3 2.1E-05 7.3E-10 68.9 14.5 68 219-286 126-197 (524)
13 4gc0_A D-xylose-proton symport 97.0 0.046 1.6E-06 47.2 16.3 44 219-262 143-186 (491)
14 2cfq_A Lactose permease; trans 94.5 0.0057 2E-07 51.8 -0.4 65 4-68 335-405 (417)
15 2i68_A Protein EMRE; transmemb 42.8 51 0.0017 22.6 5.0 10 224-233 47-56 (137)
16 3arc_T Photosystem II reaction 38.6 36 0.0012 16.5 2.6 11 58-68 18-28 (32)
17 2fyu_K Ubiquinol-cytochrome C 33.6 25 0.00085 19.8 1.8 34 12-45 8-41 (56)
18 2dw3_A Intrinsic membrane prot 30.0 93 0.0032 18.7 5.3 21 275-295 41-61 (77)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=100.00 E-value=2.5e-34 Score=251.82 Aligned_cols=296 Identities=28% Similarity=0.470 Sum_probs=208.8
Q ss_pred cceeeeeecCCCCchhhHHHHHHHHHHHHHHHHHhhhhh------------hhHHHHHHhhHHHHHHHHHhhccCCChHH
Q 042030 2 IPIYIAEITPKNIRGAFTATSQFLIVSGMSVMYLVGTIV------------SWRALALIAAVPCLLQVVGLFFIPESPRW 69 (322)
Q Consensus 2 ~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~l~~~~~~~~------------~Wr~~f~~~~~~~~i~~~~~~~lpesp~~ 69 (322)
+++|++|++|+++||+..++.+.++.+|.++++.++... .||+++.+..+++++.++..+++||||||
T Consensus 147 ~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~ 226 (491)
T 4gc0_A 147 SPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRW 226 (491)
T ss_dssp HHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHH
T ss_pred HHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHH
Confidence 467899999999999999999999999999998877543 59999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHHHhCCchhhhhhHHHHHHhhhhcccccccchhhhcchhhHHHHHHHHHHHhhhhccchhhhHhcH
Q 042030 70 LAKIGKEKELETTLQCLRGKTADISMESADIRDCTQTFEKDSKAGIFDLFQRRYAYSLSVGVGLMVMQPFVGSAAIAYYA 149 (322)
Q Consensus 70 l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (322)
+..+++.|++++.+++...++...++..+..+...+. + +.......++ .++.........++++.+.+.+.+|.
T Consensus 227 L~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (491)
T 4gc0_A 227 LMSRGKQEQAEGILRKIMGNTLATQAVQEIKHSLDHG-R--KTGGRLLMFG---VGVIVIGVMLSIFQQFVGINVVLYYA 300 (491)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H--HHTTHHHHSC---CTHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHcCchhHHHHhHHHhcCCchhHHHHHHHHHHHHhh-h--hhhhHHHHhc---ccHHHHHHHHHHHHHHhhhhHHHhcc
Confidence 9999999999999988766543222222211111111 1 1111122222 23444555666677777889999999
Q ss_pred HHHHHHcCCCchhHHH---HHHHHH---------------------HHHHHHHHHHHHHHHHHHhccCCCCCCchhHHHH
Q 042030 150 SYIIAAADLSTDIGSI---SMAIIQ---------------------ASTIWMGLSLTIIALAFGLQDTHLWNEATPVLVY 205 (322)
Q Consensus 150 ~~~~~~~g~~~~~~~~---~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (322)
|.+.+..+.+...... +.++.. .+...+.++++.++...... ...+..+
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~-------~~~~~~~ 373 (491)
T 4gc0_A 301 PEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQ-------APGIVAL 373 (491)
T ss_dssp HHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTT-------CCHHHHH
T ss_pred hHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcc-------cchHHHH
Confidence 9999988776542222 111111 11122222222222222111 2234455
Q ss_pred HHHHHHHHHHhhcccchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH-------hhhcchhHHHHHHHH
Q 042030 206 VGIMGFSIAFALGMAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTME-------WSRTGTFSIFWVICA 278 (322)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~ 278 (322)
...+++..+++.++.++.+.+.+|++|++.|+++.|+++.++++++++++.+++.+.+ .+....+++++++++
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~ 453 (491)
T 4gc0_A 374 LSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGV 453 (491)
T ss_dssp HHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 5556667777888889999999999999999999999999999999999999876643 334557888999999
Q ss_pred HHHHHHHhhccCCCCCChhHHHHHHHhhhhhh
Q 042030 279 AAVLFVAFLVPETKGRHSKKFKYQLQSINKFY 310 (322)
Q Consensus 279 ~~~~~~~~~~~et~~~~~~~~~~~~~~~~~~~ 310 (322)
++.++.++++||||+|++||+|+.++++.+..
T Consensus 454 ~~~i~~~~~~PETkg~tLeei~~~f~~~~~~~ 485 (491)
T 4gc0_A 454 LAALFMWKFVPETKGKTLEELEALWEPETKKT 485 (491)
T ss_dssp HHHHHHHHHCCCCTTCCHHHHGGGTC------
T ss_pred HHHHHHHheecCCCCCCHHHHHHHhCCCCccc
Confidence 99999999999999999999988877555433
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.80 E-value=9.1e-20 Score=157.64 Aligned_cols=264 Identities=11% Similarity=0.125 Sum_probs=155.9
Q ss_pred ceeeeeecCCCCchhhHHHHHHHHHHHHHHHHHhhhhh----h-hHHHHHHhhHHHHHHH-HHhhccCCChHHHHhcCCH
Q 042030 3 PIYIAEITPKNIRGAFTATSQFLIVSGMSVMYLVGTIV----S-WRALALIAAVPCLLQV-VGLFFIPESPRWLAKIGKE 76 (322)
Q Consensus 3 ~~~i~e~~~~~~rg~~~~~~~~~~~~G~~l~~~~~~~~----~-Wr~~f~~~~~~~~i~~-~~~~~lpesp~~l~~~~~~ 76 (322)
.++++|++|+++|++..++.+.+..+|.++++.++..+ + ||+.|++.+++.++.. +..+++||+|+....++++
T Consensus 141 ~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (451)
T 1pw4_A 141 GRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIE 220 (451)
T ss_dssp HHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCT
T ss_pred HHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChh
Confidence 45788999999999999999999999999999888653 7 9999999988877664 4467789988742111111
Q ss_pred HHHHHHHHHHhCCchhhhhhHHHHHHhhhhcccccccchhhhcchhhHHHHHHHHHHHhhhhccchhhhHhcHHHHHHH-
Q 042030 77 KELETTLQCLRGKTADISMESADIRDCTQTFEKDSKAGIFDLFQRRYAYSLSVGVGLMVMQPFVGSAAIAYYASYIIAA- 155 (322)
Q Consensus 77 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 155 (322)
+.. + +.+++ .++..+++....+...+++++++..+...+...+. ....+.+..+.|.++++
T Consensus 221 ~~~---------~--~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 282 (451)
T 1pw4_A 221 EYK---------N--DYPDD---YNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFV----YLLRYGILDWSPTYLKEV 282 (451)
T ss_dssp TTC---------C--C----------------CCTHHHHHHTSSCHHHHHHHHHHHHH----HHHHHHHHHHHHHHBTTB
T ss_pred hhc---------c--ccccc---chhhhhcccccccchHHHHHcCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHh
Confidence 100 0 00000 00000000011111135566655444443332222 23456777888988887
Q ss_pred cCCCchhHHHHHHHHH----------------H--HHH-HHHHHHHHHH-HHHHhccCCCCCCchhHHHHHHHHHHHHHH
Q 042030 156 ADLSTDIGSISMAIIQ----------------A--STI-WMGLSLTIIA-LAFGLQDTHLWNEATPVLVYVGIMGFSIAF 215 (322)
Q Consensus 156 ~g~~~~~~~~~~~~~~----------------~--~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (322)
.|.+....+....... . +.. ...+...+.. ......... .+...+......++.+.+
T Consensus 283 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~- 359 (451)
T 1pw4_A 283 KHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMN--PAGNPTVDMICMIVIGFL- 359 (451)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSC--CTTCHHHHHHHHHHHHHH-
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHh--cccCHHHHHHHHHHHHHH-
Confidence 5888765544443333 1 111 1111111111 111111111 111223333333333322
Q ss_pred hhcccchhhhhhccccCccccchhHHHHHHHHHH-HHHHHHHHHHHHHH-hhhcchhHHHHHHHHHHHHHHHhh
Q 042030 216 ALGMAGLPSVIMAEIFPINIKGSAGSLVILLHNC-SNWIVTYTFHFTME-WSRTGTFSIFWVICAAAVLFVAFL 287 (322)
Q Consensus 216 ~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~-g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 287 (322)
..+..+....+..|.+|++.|+++.|+.+...++ |..++|.+.+.+.+ .++...+.+.+++.+++.++.+..
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 360 IYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 2234455578899999999999999999999999 99999999999988 677777777777777776655443
No 3
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.71 E-value=1.3e-15 Score=131.05 Aligned_cols=231 Identities=10% Similarity=-0.043 Sum_probs=140.1
Q ss_pred ceeeeeecCCCCchhhHHHHHHHHHHHHHHHHHhhhhhh------------------------------hHHHHHHhhHH
Q 042030 3 PIYIAEITPKNIRGAFTATSQFLIVSGMSVMYLVGTIVS------------------------------WRALALIAAVP 52 (322)
Q Consensus 3 ~~~i~e~~~~~~rg~~~~~~~~~~~~G~~l~~~~~~~~~------------------------------Wr~~f~~~~~~ 52 (322)
.++++|++|+++|++..++.+.+..+|..+++.++..+. ||+.|++.+++
T Consensus 139 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 218 (438)
T 3o7q_A 139 NPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAI 218 (438)
T ss_dssp HHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHH
Confidence 467899999999999999999999999999999887652 99999887776
Q ss_pred HHHHHHH--hhccCCChHHHHhcCCHHHHHHHHHHHhCCchhhhhhHHHHHHhhhhcccccccchhhhcchhhHHHHHHH
Q 042030 53 CLLQVVG--LFFIPESPRWLAKIGKEKELETTLQCLRGKTADISMESADIRDCTQTFEKDSKAGIFDLFQRRYAYSLSVG 130 (322)
Q Consensus 53 ~~i~~~~--~~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 130 (322)
.++..+. ....||+++. +++++ ++++.+.+++++++++..+.....
T Consensus 219 ~~~~~~~~~~~~~p~~~~~---~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 266 (438)
T 3o7q_A 219 VLLVALLIMLTKFPALQSD---NHSDA-----------------------------KQGSFSASLSRLARIRHWRWAVLA 266 (438)
T ss_dssp HHHHHHHHHHCCCCCCTTT---CCCCS-----------------------------STTSHHHHHHHHTTCSHHHHHHHH
T ss_pred HHHHHHHHHHHcCCccccc---ccccc-----------------------------cccchhhhHHHHHhChHHHHHHHH
Confidence 6655433 3346776541 00000 011123356677777666655554
Q ss_pred HHHHhhhhccchhhhHhcHHHH-HHHc-CCCchhHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHH
Q 042030 131 VGLMVMQPFVGSAAIAYYASYI-IAAA-DLSTDIGSISMAIIQ-------------------ASTIWMGLSLTIIALAFG 189 (322)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~-~~~~-g~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~ 189 (322)
..+... .......+.|.+ +++. |.+....+....... .............+....
T Consensus 267 ~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~ 342 (438)
T 3o7q_A 267 QFCYVG----AQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLIS 342 (438)
T ss_dssp HHHHHH----HHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH----HHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 333332 345667788888 7776 888775554444333 000000011111111111
Q ss_pred hccCCCCCCchhHHHHHHHHHHHHHHhhcccchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH-hh-hc
Q 042030 190 LQDTHLWNEATPVLVYVGIMGFSIAFALGMAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTME-WS-RT 267 (322)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~-~~ 267 (322)
... .. ........+.+.+. ....+..+.+..|.+|++ |+.+.++.. .+.+|+.++|.+.+.+.+ .+ +.
T Consensus 343 ~~~------~~-~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~ 412 (438)
T 3o7q_A 343 AFA------GG-HVGLIALTLCSAFM-SIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIP 412 (438)
T ss_dssp HHC------CH-HHHHHHHHHHHHHH-TTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSG
T ss_pred HHc------CC-cHHHHHHHHHHHHH-HHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchH
Confidence 111 11 12222223333333 334566788889999977 888888877 778999999999999998 55 66
Q ss_pred chhHHHHHHHHH
Q 042030 268 GTFSIFWVICAA 279 (322)
Q Consensus 268 ~~~~~~~~~~~~ 279 (322)
..+.+.+++.++
T Consensus 413 ~~~~~~~~~~~~ 424 (438)
T 3o7q_A 413 TAELIPALCFAV 424 (438)
T ss_dssp GGGHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666655444333
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.63 E-value=2e-15 Score=131.89 Aligned_cols=76 Identities=13% Similarity=0.130 Sum_probs=59.1
Q ss_pred ccchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhccCCCCC
Q 042030 219 MAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTMEWSRTGTFSIFWVICAAAVLFVAFLVPETKGR 294 (322)
Q Consensus 219 ~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~et~~~ 294 (322)
..+..+.+..|.+|++.|+++.|+.+...++|..+++.+.+.+.+.++...+...++++++++++.+.+.++.+++
T Consensus 403 ~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (491)
T 4aps_A 403 ISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAKSEVAYFSYFGLGSVVLGIVLVFLSKRIQGL 478 (491)
T ss_dssp TTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGSSTTHHHHHTHHHHHHHHHHHHHC-------
T ss_pred HhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566688999999999999999999999999999999999887776666778888888888777777666665543
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.56 E-value=1.3e-15 Score=128.41 Aligned_cols=219 Identities=18% Similarity=0.115 Sum_probs=133.4
Q ss_pred ceeeeeecCCCCchhhHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHhhHHHHHHHH-HhhccCCChHHHHhcCCHH
Q 042030 3 PIYIAEITPKNIRGAFTATSQFLIVSGMSVMYLVGTIV----SWRALALIAAVPCLLQVV-GLFFIPESPRWLAKIGKEK 77 (322)
Q Consensus 3 ~~~i~e~~~~~~rg~~~~~~~~~~~~G~~l~~~~~~~~----~Wr~~f~~~~~~~~i~~~-~~~~lpesp~~l~~~~~~~ 77 (322)
.+++.|++|+++|++..+..+.+..+|..+++.++..+ +||+.|++.++..++..+ ..+++||+++. +++
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-- 184 (375)
T 2gfp_A 110 RTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRPV---DAP-- 184 (375)
T ss_dssp HHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTT---TCC--
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccCCC---Ccc--
Confidence 35678999999999999999999999999999888765 899999998888777765 45678998652 000
Q ss_pred HHHHHHHHHhCCchhhhhhHHHHHHhhhhcccccccchhhhcchhhHHHHHHHHHHHhhhhccchhhhHhcHHHHHHH-c
Q 042030 78 ELETTLQCLRGKTADISMESADIRDCTQTFEKDSKAGIFDLFQRRYAYSLSVGVGLMVMQPFVGSAAIAYYASYIIAA-A 156 (322)
Q Consensus 78 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 156 (322)
+++.+.+++++++++..+.......+.. ........+.|.++++ .
T Consensus 185 ------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 230 (375)
T 2gfp_A 185 ------------------------------RTRLLTSYKTLFGNSGFNCYLLMLIGGL----AGIAAFEACSGVLMGAVL 230 (375)
T ss_dssp ------------------------------CCCTTTCSTHHHHHHHHHHHHHHHHHHH----HHHHHHHHHCSCSSHHHH
T ss_pred ------------------------------cccHHHHHHHHhcCcchHHHHHHHHHHH----HHHHHHHHHHHHHHHHHh
Confidence 0112335566776665554444333222 2344555666666555 4
Q ss_pred CCCchhHHHHHHHHH----------------HHHHHHHHHHHH---HHHHHHhccCCCCCCchhHHHHHHHHHHHHHHhh
Q 042030 157 DLSTDIGSISMAIIQ----------------ASTIWMGLSLTI---IALAFGLQDTHLWNEATPVLVYVGIMGFSIAFAL 217 (322)
Q Consensus 157 g~~~~~~~~~~~~~~----------------~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (322)
|.+....+....... ... ....+... .+........ ....+.+.......+.+.+.+.
T Consensus 231 g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~g~~~~~ 307 (375)
T 2gfp_A 231 GLSSMTVSILFILPIPAAFFGAWFAGRPNKRFST-LMWQSVICCLLAGLLMWIPDW--FGVMNVWTLLVPAALFFFGAGM 307 (375)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHH-HHHHHHHHHHHTSSSSSHHHH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhh--hccccHHHHHHHHHHHHHHHHH
Confidence 665554444333322 111 11111111 0000000000 0001223233333333333333
Q ss_pred cccchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042030 218 GMAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTMEWS 265 (322)
Q Consensus 218 ~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 265 (322)
..+....+..|.+| +.|+++.|+.+...++|..++|.+.+.+.+.+
T Consensus 308 -~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~ 353 (375)
T 2gfp_A 308 -LFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTG 353 (375)
T ss_dssp -TSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHH
T ss_pred -hhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 45666888999998 89999999999999999999999999887743
No 6
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.41 E-value=2.4e-12 Score=113.27 Aligned_cols=78 Identities=13% Similarity=-0.001 Sum_probs=51.8
Q ss_pred ccchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHh-h--h---------cchhHHHHHHHHHHHHHHHh
Q 042030 219 MAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTMEW-S--R---------TGTFSIFWVICAAAVLFVAF 286 (322)
Q Consensus 219 ~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~--~---------~~~~~~~~~~~~~~~~~~~~ 286 (322)
..+..+.+..|..|++.|+++.|+.+...++|+.++|.+.+.+.+. + + ...+.+.++++++++++.++
T Consensus 422 ~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (524)
T 2xut_A 422 VSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILAAIVFAL 501 (524)
T ss_dssp HHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHHHHHHH
Confidence 4566688899999999999999999999999999999999877651 1 1 12256666666666666666
Q ss_pred hccCCCCCCh
Q 042030 287 LVPETKGRHS 296 (322)
Q Consensus 287 ~~~et~~~~~ 296 (322)
+.+++++++.
T Consensus 502 ~~~~~~~~~~ 511 (524)
T 2xut_A 502 YARSYQMQDH 511 (524)
T ss_dssp ----------
T ss_pred HHHHhccchh
Confidence 6666655543
No 7
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.39 E-value=1.3e-13 Score=117.83 Aligned_cols=76 Identities=7% Similarity=0.020 Sum_probs=60.5
Q ss_pred chhhhhhccccCccccchhHHHH-HHHHHHHHHHHHHHHHHHHH-hhhcchhHHHHHHHHHHHHHHHhhccCCCCCCh
Q 042030 221 GLPSVIMAEIFPINIKGSAGSLV-ILLHNCSNWIVTYTFHFTME-WSRTGTFSIFWVICAAAVLFVAFLVPETKGRHS 296 (322)
Q Consensus 221 ~~~~~~~~e~~p~~~r~~~~~~~-~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~et~~~~~ 296 (322)
+..+.+++|.+|++.|+++.+.. +..+++|++++|.+.+.+.+ .++...|.+.++++++++++.+...||+++.++
T Consensus 331 ~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~~ 408 (417)
T 2cfq_A 331 VGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLSL 408 (417)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSCTTCS
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCchHH
Confidence 33478999999999999999995 77888999999999998887 566667777888878777766666777655443
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=98.82 E-value=1.8e-08 Score=86.63 Aligned_cols=75 Identities=15% Similarity=0.076 Sum_probs=63.5
Q ss_pred ccchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH-hh-hcchhHHHHHHHHHHHHHHHhhccCCCC
Q 042030 219 MAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTME-WS-RTGTFSIFWVICAAAVLFVAFLVPETKG 293 (322)
Q Consensus 219 ~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~et~~ 293 (322)
..+....+++|.+|++.|+.+.++.+....+|..++|.+.+.+.+ .+ +...+.+.+++.++..++.++.+||+..
T Consensus 136 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~ 212 (451)
T 1pw4_A 136 GWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQ 212 (451)
T ss_dssp THHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSST
T ss_pred ccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHh
Confidence 456668899999999999999999999999999999999988777 66 8888988888888877777777777543
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=98.68 E-value=8.1e-07 Score=76.03 Aligned_cols=117 Identities=11% Similarity=-0.003 Sum_probs=71.8
Q ss_pred chhhhHhcHHHHHHHcCCCchhHHHHHHHHH----------------HH-HHHHHHHHHHHHHHHHhc---cCCCCCCch
Q 042030 141 GSAAIAYYASYIIAAADLSTDIGSISMAIIQ----------------AS-TIWMGLSLTIIALAFGLQ---DTHLWNEAT 200 (322)
Q Consensus 141 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~----------------~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 200 (322)
.........|.+.++.|.+....+++.+... .+ ...+.++.++.++..... ... .+
T Consensus 41 ~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~----~~ 116 (438)
T 3o7q_A 41 ANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEI----MN 116 (438)
T ss_dssp HHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHT----TC
T ss_pred HHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhcccc----cc
Confidence 3456667788888888998886666665544 00 001111111111111110 100 12
Q ss_pred hHHHHHHHHHHHHHHhhcccchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 042030 201 PVLVYVGIMGFSIAFALGMAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTM 262 (322)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~ 262 (322)
.+..++..++.+.+.+ ...+....+++|.+|++.|+.+.++.+....+|..++|.+.+.+.
T Consensus 117 ~~~l~~~~~l~G~~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 177 (438)
T 3o7q_A 117 YTLFLVGLFIIAAGLG-CLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHhhHH-HhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444343333 345566889999999999999999999999999999999999887
No 10
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.50 E-value=6.7e-07 Score=74.95 Aligned_cols=75 Identities=16% Similarity=0.222 Sum_probs=60.6
Q ss_pred ccchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH-hhhcchhHHHHHHHHHHHHHHHhhccCCCC
Q 042030 219 MAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTME-WSRTGTFSIFWVICAAAVLFVAFLVPETKG 293 (322)
Q Consensus 219 ~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~et~~ 293 (322)
..+....++.|.+|++.|+++.+..+....+|..++|.+.+.+.+ .++...+.+.+++.++..+.....+||+++
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (375)
T 2gfp_A 105 GGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRP 180 (375)
T ss_dssp HHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCST
T ss_pred hhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccCC
Confidence 456668899999999999999999999999999999999988776 577777777777776666655566777644
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=98.40 E-value=3.3e-06 Score=73.42 Aligned_cols=71 Identities=13% Similarity=0.056 Sum_probs=55.5
Q ss_pred ccchhhhhhccccCccc--cchhHHHHHHHHHHHHHHHHHHHHHHHH-hhhcchhHHHHHHHHHHHHHHHhhcc
Q 042030 219 MAGLPSVIMAEIFPINI--KGSAGSLVILLHNCSNWIVTYTFHFTME-WSRTGTFSIFWVICAAAVLFVAFLVP 289 (322)
Q Consensus 219 ~~~~~~~~~~e~~p~~~--r~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (322)
..+....+++|.+|++. |+.+.+..+....+|..++|.+.+.+.+ .++...|.+.++..+++.+..+...+
T Consensus 125 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~ 198 (491)
T 4aps_A 125 LKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGK 198 (491)
T ss_dssp HHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 45666889999999988 7778888889999999999999999888 77777787776666666555444333
No 12
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.26 E-value=2.1e-05 Score=68.91 Aligned_cols=68 Identities=18% Similarity=0.235 Sum_probs=53.3
Q ss_pred ccchhhhhhccccCccccchhHHH---HHHHHHHHHHHHHHHHHHHHH-hhhcchhHHHHHHHHHHHHHHHh
Q 042030 219 MAGLPSVIMAEIFPINIKGSAGSL---VILLHNCSNWIVTYTFHFTME-WSRTGTFSIFWVICAAAVLFVAF 286 (322)
Q Consensus 219 ~~~~~~~~~~e~~p~~~r~~~~~~---~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 286 (322)
..+....+++|.+|++.|+.+.+. .+....+|..++|.+.+.+.+ .++...|.+.+++.+++.+..+.
T Consensus 126 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 126 IKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp THHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHS
T ss_pred cchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHH
Confidence 456668899999999999876666 888899999999999998887 67777777777766665554433
No 13
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=96.95 E-value=0.046 Score=47.16 Aligned_cols=44 Identities=20% Similarity=0.215 Sum_probs=36.0
Q ss_pred ccchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 042030 219 MAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTM 262 (322)
Q Consensus 219 ~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~ 262 (322)
..+....+++|..|++.|+...++......+|..+++.+.....
T Consensus 143 ~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~ 186 (491)
T 4gc0_A 143 ASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIA 186 (491)
T ss_dssp HHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhc
Confidence 45666899999999999999999988888888877777665544
No 14
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=94.46 E-value=0.0057 Score=51.79 Aligned_cols=65 Identities=12% Similarity=0.107 Sum_probs=48.8
Q ss_pred eeeeeecCCCCchhhHHH-HHHHHHHHHHHHHHhhhhh----hhHHHHHHhhHHHHHHHHH-hhccCCChH
Q 042030 4 IYIAEITPKNIRGAFTAT-SQFLIVSGMSVMYLVGTIV----SWRALALIAAVPCLLQVVG-LFFIPESPR 68 (322)
Q Consensus 4 ~~i~e~~~~~~rg~~~~~-~~~~~~~G~~l~~~~~~~~----~Wr~~f~~~~~~~~i~~~~-~~~lpesp~ 68 (322)
.++.|.+|++.||...+. ++....+|..+++.+++.+ |++..|.+.++.+++..+. ..+.||.++
T Consensus 335 ~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~ 405 (417)
T 2cfq_A 335 KYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGP 405 (417)
T ss_dssp HHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSCT
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCc
Confidence 467899999999998888 4767777877777776654 7888998888887777554 455676543
No 15
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=42.83 E-value=51 Score=22.60 Aligned_cols=10 Identities=10% Similarity=0.056 Sum_probs=2.3
Q ss_pred hhhhccccCc
Q 042030 224 SVIMAEIFPI 233 (322)
Q Consensus 224 ~~~~~e~~p~ 233 (322)
+.+.-+..|.
T Consensus 47 ~~~alk~i~~ 56 (137)
T 2i68_A 47 LAQTLAYIPT 56 (137)
T ss_dssp HHHHHC----
T ss_pred HHHHHHhCCh
Confidence 3333344443
No 16
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=38.57 E-value=36 Score=16.49 Aligned_cols=11 Identities=36% Similarity=0.549 Sum_probs=7.5
Q ss_pred HHhhccCCChH
Q 042030 58 VGLFFIPESPR 68 (322)
Q Consensus 58 ~~~~~lpesp~ 68 (322)
.+..+.+|+||
T Consensus 18 FFAI~FRePPr 28 (32)
T 3arc_T 18 FFAIFFREPPR 28 (32)
T ss_dssp HHHHHTSCCCC
T ss_pred HHhhhhcCCCC
Confidence 33466789887
No 17
>2fyu_K Ubiquinol-cytochrome C reductase complex 6.4 kDa; transmembrane helices, 11 protein complex, oxidoreductase; HET: HEM FDN; 2.26A {Bos taurus} SCOP: f.23.15.1 PDB: 1sqq_K* 1sqv_K* 1sqx_K* 1l0l_K* 1ntk_K* 1ntm_K* 1ntz_K* 1nu1_K* 1sqp_K* 1sqb_K* 1be3_K* 1bgy_K* 2ybb_K* 1l0n_K* 1qcr_K*
Probab=33.57 E-value=25 Score=19.79 Aligned_cols=34 Identities=12% Similarity=-0.018 Sum_probs=18.2
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHhhhhhhhHHH
Q 042030 12 KNIRGAFTATSQFLIVSGMSVMYLVGTIVSWRAL 45 (322)
Q Consensus 12 ~~~rg~~~~~~~~~~~~G~~l~~~~~~~~~Wr~~ 45 (322)
++++..+..+.-.....|..-+-.+.++.+||.+
T Consensus 8 ~~~~~~~~~w~psa~~~Gaaa~v~~ly~tdwr~I 41 (56)
T 2fyu_K 8 PRYRQLARNWVPTASLWGAVGAVGLVWATDWRLI 41 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HhHHHHHHHHhhhhhhhhhhhhhheeeeccHHHH
Confidence 3344444455555555555555555555577754
No 18
>2dw3_A Intrinsic membrane protein PUFX; quinone exchange, photosynthesis, light- harvesting, GXXXG motif, dimerization; NMR {Rhodobacter sphaeroides} PDB: 2ita_A
Probab=29.96 E-value=93 Score=18.66 Aligned_cols=21 Identities=10% Similarity=0.176 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHhhccCCCCCC
Q 042030 275 VICAAAVLFVAFLVPETKGRH 295 (322)
Q Consensus 275 ~~~~~~~~~~~~~~~et~~~~ 295 (322)
.+.+++.-++-..+||..+..
T Consensus 41 ~~~lv~l~~iG~~LPE~Sr~a 61 (77)
T 2dw3_A 41 LLLIGFFRVVGRMLPIQENQA 61 (77)
T ss_dssp HHHHHHHHHHHHCTTTTCSSC
T ss_pred HHHHHHHHHHHHhCchhcccC
Confidence 333333334445688865443
Done!