Query 042030
Match_columns 322
No_of_seqs 313 out of 1185
Neff 11.5
Searched_HMMs 13730
Date Mon Mar 25 23:00:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042030.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/042030hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 99.8 7.9E-20 5.8E-24 155.6 11.3 264 3-289 138-432 (447)
2 d1pv7a_ f.38.1.2 (A:) Lactose 99.5 1.4E-12 1E-16 108.5 18.3 96 202-298 313-410 (417)
3 d1pw4a_ f.38.1.1 (A:) Glycerol 98.8 8.7E-09 6.3E-13 86.4 9.9 73 219-291 133-207 (447)
4 d1pv7a_ f.38.1.2 (A:) Lactose 97.6 0.00019 1.4E-08 58.1 10.6 61 235-295 135-195 (417)
5 d2fyuk1 f.23.15.1 (K:1-53) Sub 50.7 4.1 0.0003 21.1 1.7 38 8-45 4-41 (53)
6 d2axtt1 f.23.34.1 (T:1-30) Pho 34.2 17 0.0013 15.4 2.6 9 60-68 20-28 (30)
7 d1v54g_ f.23.2.1 (G:) Mitochon 20.5 58 0.0042 18.7 3.4 22 42-63 16-37 (84)
8 d1j3ea_ d.228.1.1 (A:) Replica 7.1 51 0.0037 20.2 0.3 23 63-85 74-96 (115)
9 d1v54d_ f.23.1.1 (D:) Mitochon 5.6 2.2E+02 0.016 18.1 2.7 10 41-50 74-83 (144)
10 d2e74f1 f.23.25.1 (F:1-32) Pet 5.4 1.6E+02 0.011 12.6 2.5 16 17-32 11-26 (32)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=99.80 E-value=7.9e-20 Score=155.58 Aligned_cols=264 Identities=11% Similarity=0.120 Sum_probs=149.0
Q ss_pred ceeeeeecCCCCchhhHHHHHHHHHHHHHHHHHhhhhh-----hhHHHHHHhhHHHHHHHH-HhhccCCChHHHHhcCCH
Q 042030 3 PIYIAEITPKNIRGAFTATSQFLIVSGMSVMYLVGTIV-----SWRALALIAAVPCLLQVV-GLFFIPESPRWLAKIGKE 76 (322)
Q Consensus 3 ~~~i~e~~~~~~rg~~~~~~~~~~~~G~~l~~~~~~~~-----~Wr~~f~~~~~~~~i~~~-~~~~lpesp~~l~~~~~~ 76 (322)
..+++|++|+++||+..++.+.+..+|..+++.++... +||+.|++.+++.++..+ .+++++|+|+.......+
T Consensus 138 ~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (447)
T d1pw4a_ 138 GRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIE 217 (447)
T ss_dssp HHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCT
T ss_pred HHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHHHHHHHHhcccchhhcccchhh
Confidence 35788999999999999999999999998888766543 799999998888776654 456677777532111111
Q ss_pred HHHHHHHHHHhCCchhhhhhHHHHHHhhhhcccccccchhhhcchhhHHHHHHHHHHHhhhhccchhhhHhcHHHHHHHc
Q 042030 77 KELETTLQCLRGKTADISMESADIRDCTQTFEKDSKAGIFDLFQRRYAYSLSVGVGLMVMQPFVGSAAIAYYASYIIAAA 156 (322)
Q Consensus 77 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (322)
+. .+++.++.++..+++....+...+..++++..+.......+ .....+....+.|.++.+.
T Consensus 218 ~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 279 (447)
T d1pw4a_ 218 EY--------------KNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVF----VYLLRYGILDWSPTYLKEV 279 (447)
T ss_dssp TT--------------CCC-------------CCTHHHHHHTSSCHHHHHHHHHHHH----HHHHHHHHHHHHHHHBTTB
T ss_pred hh--------------hhhcccchhhccccccchhhHHHHHHHcCchHHHHHHHhhh----hhhhhhcchhhhhhhcccc
Confidence 10 00000000111111111222234445555444433332222 2223556677778777665
Q ss_pred -CCCchhHHHHHHHHH---------------------HHHHH-HHHHHHHHHHHHHhccCCCCCCchhHHHHHHHHHHHH
Q 042030 157 -DLSTDIGSISMAIIQ---------------------ASTIW-MGLSLTIIALAFGLQDTHLWNEATPVLVYVGIMGFSI 213 (322)
Q Consensus 157 -g~~~~~~~~~~~~~~---------------------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (322)
+.+....+....... ..... ........+....... .....+...+..++.+
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~g- 354 (447)
T d1pw4a_ 280 KHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMN----PAGNPTVDMICMIVIG- 354 (447)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSC----CTTCHHHHHHHHHHHH-
T ss_pred cccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhc----ccccHHHHHHHHHHHH-
Confidence 777664443333322 00111 1111111111111111 1122333333333322
Q ss_pred HHhhcccchhhhhhccccCccccchhHHHHHHHHHHH-HHHHHHHHHHHHH-hhhcchhHHHHHHHHHHHHHHHhhcc
Q 042030 214 AFALGMAGLPSVIMAEIFPINIKGSAGSLVILLHNCS-NWIVTYTFHFTME-WSRTGTFSIFWVICAAAVLFVAFLVP 289 (322)
Q Consensus 214 ~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (322)
+...+..+..+.+..|.+|++.|+++.|+.+.+++++ ..++|.+.+.+.+ .++...+.+.+++.+++.++.+.+.+
T Consensus 355 ~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 432 (447)
T d1pw4a_ 355 FLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMI 432 (447)
T ss_dssp HHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2233445566888999999999999999999998885 5668889998888 67677777777777777665555443
No 2
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=99.47 E-value=1.4e-12 Score=108.45 Aligned_cols=96 Identities=6% Similarity=0.013 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHHHhhcccchhhhhhccccCccccchhHHHHH-HHHHHHHHHHHHHHHHHHH-hhhcchhHHHHHHHHH
Q 042030 202 VLVYVGIMGFSIAFALGMAGLPSVIMAEIFPINIKGSAGSLVI-LLHNCSNWIVTYTFHFTME-WSRTGTFSIFWVICAA 279 (322)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~-~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 279 (322)
+..+....+.+.+.+. ..+....+..|.+|++.|+++.++.. ....+|..++|.+.+.+.+ .++...+.+.+++.++
T Consensus 313 ~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~ 391 (417)
T d1pv7a_ 313 LEVVILKTLHMFEVPF-LLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALG 391 (417)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHH-HHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
Confidence 3333333333333333 34566889999999999999999865 4567899999999999998 7778888888888888
Q ss_pred HHHHHHhhccCCCCCChhH
Q 042030 280 AVLFVAFLVPETKGRHSKK 298 (322)
Q Consensus 280 ~~~~~~~~~~et~~~~~~~ 298 (322)
..++..+.+++++..++++
T Consensus 392 ~~~~~~~~l~~~~~~~~~r 410 (417)
T d1pv7a_ 392 FTLISVFTLSGPGPLSLLR 410 (417)
T ss_dssp HHHHHHHHSCCSSCTTHHH
T ss_pred HHHHHHHhhcCCCccchhH
Confidence 8887778787776666544
No 3
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=98.81 E-value=8.7e-09 Score=86.35 Aligned_cols=73 Identities=15% Similarity=0.050 Sum_probs=58.8
Q ss_pred ccchhhhhhccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH--hhhcchhHHHHHHHHHHHHHHHhhccCC
Q 042030 219 MAGLPSVIMAEIFPINIKGSAGSLVILLHNCSNWIVTYTFHFTME--WSRTGTFSIFWVICAAAVLFVAFLVPET 291 (322)
Q Consensus 219 ~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~et 291 (322)
..+....++.|.+|++.|+.+.++.+....+|..++|.+.+...+ .++...+.+.+.+.++.+++.+.+.+++
T Consensus 133 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (447)
T d1pw4a_ 133 GWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDT 207 (447)
T ss_dssp THHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCS
T ss_pred hhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHHHHHHHHhcccc
Confidence 345557889999999999999999999999999999998887666 3556677777777777777777766654
No 4
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=97.62 E-value=0.00019 Score=58.08 Aligned_cols=61 Identities=3% Similarity=-0.140 Sum_probs=42.8
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhccCCCCCC
Q 042030 235 IKGSAGSLVILLHNCSNWIVTYTFHFTMEWSRTGTFSIFWVICAAAVLFVAFLVPETKGRH 295 (322)
Q Consensus 235 ~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~et~~~~ 295 (322)
.+....+........+..+++.+.+.+.+.++...+........+..++..+..+|+....
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (417)
T d1pv7a_ 135 RSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTDAPSSA 195 (417)
T ss_dssp HHSCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSSCCCSCSSS
T ss_pred hhHHHHHHHhhhhccccccccccccccccccccccccchhhHHHHHHHHHHHHhcccccch
Confidence 3455666777777888889999988888866666677666666666666666666654443
No 5
>d2fyuk1 f.23.15.1 (K:1-53) Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=50.67 E-value=4.1 Score=21.08 Aligned_cols=38 Identities=11% Similarity=-0.029 Sum_probs=27.1
Q ss_pred eecCCCCchhhHHHHHHHHHHHHHHHHHhhhhhhhHHH
Q 042030 8 EITPKNIRGAFTATSQFLIVSGMSVMYLVGTIVSWRAL 45 (322)
Q Consensus 8 e~~~~~~rg~~~~~~~~~~~~G~~l~~~~~~~~~Wr~~ 45 (322)
....+++...+..+.......|..-+-.+.++.+||.+
T Consensus 4 k~iG~k~~~ia~~wips~~~~G~a~gl~lvy~TDWkli 41 (53)
T d2fyuk1 4 RFLGPRYRQLARNWVPTASLWGAVGAVGLVWATDWRLI 41 (53)
T ss_dssp GGCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred hhhhHHHHHHHHHHhhhhhhhhhhhheeeeeeehHHHH
Confidence 34455666667777777777787777777777899975
No 6
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=34.18 E-value=17 Score=15.38 Aligned_cols=9 Identities=44% Similarity=0.859 Sum_probs=5.9
Q ss_pred hhccCCChH
Q 042030 60 LFFIPESPR 68 (322)
Q Consensus 60 ~~~lpesp~ 68 (322)
..|.+|.||
T Consensus 20 aiffreppr 28 (30)
T d2axtt1 20 AIFFREPPR 28 (30)
T ss_dssp HHHTSCCCC
T ss_pred HHHhcCCCC
Confidence 356778775
No 7
>d1v54g_ f.23.2.1 (G:) Mitochondrial cytochrome c oxidase subunit VIa {Cow (Bos taurus) [TaxId: 9913]}
Probab=20.47 E-value=58 Score=18.65 Aligned_cols=22 Identities=23% Similarity=0.374 Sum_probs=17.0
Q ss_pred hHHHHHHhhHHHHHHHHHhhcc
Q 042030 42 WRALALIAAVPCLLQVVGLFFI 63 (322)
Q Consensus 42 Wr~~f~~~~~~~~i~~~~~~~l 63 (322)
||-+-++.++|++++..+-.++
T Consensus 16 Wkkis~~va~P~i~l~~~n~~~ 37 (84)
T d1v54g_ 16 WRFLTFGLALPSVALCTLNSWL 37 (84)
T ss_dssp HHHHHHHTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999988876554333
No 8
>d1j3ea_ d.228.1.1 (A:) Replication modulator SeqA, C-terminal DNA-binding domain {Escherichia coli [TaxId: 562]}
Probab=7.13 E-value=51 Score=20.15 Aligned_cols=23 Identities=13% Similarity=0.401 Sum_probs=14.3
Q ss_pred cCCChHHHHhcCCHHHHHHHHHH
Q 042030 63 IPESPRWLAKIGKEKELETTLQC 85 (322)
Q Consensus 63 lpesp~~l~~~~~~~~a~~~~~~ 85 (322)
+|+||-|-..+.+..+-+..+.+
T Consensus 74 Ip~TpfWViTN~NT~rKr~ml~~ 96 (115)
T d1j3ea_ 74 VPGTPYWVITNTNTGRKCSMIEH 96 (115)
T ss_dssp CTTSSCEECCCSCHHHHHHHHHH
T ss_pred CCCCCeEEEecCChHHHHHHHHH
Confidence 57777777666666555544443
No 9
>d1v54d_ f.23.1.1 (D:) Mitochondrial cytochrome c oxidase subunit IV {Cow (Bos taurus) [TaxId: 9913]}
Probab=5.60 E-value=2.2e+02 Score=18.05 Aligned_cols=10 Identities=20% Similarity=0.537 Sum_probs=6.4
Q ss_pred hhHHHHHHhh
Q 042030 41 SWRALALIAA 50 (322)
Q Consensus 41 ~Wr~~f~~~~ 50 (322)
.|..++....
T Consensus 74 ewK~v~g~~~ 83 (144)
T d1v54d_ 74 EWKTVVGAAM 83 (144)
T ss_dssp HHHHHHHHHH
T ss_pred chhHHHHHHH
Confidence 5888776433
No 10
>d2e74f1 f.23.25.1 (F:1-32) PetM subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=5.43 E-value=1.6e+02 Score=12.55 Aligned_cols=16 Identities=6% Similarity=-0.309 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHH
Q 042030 17 AFTATSQFLIVSGMSV 32 (322)
Q Consensus 17 ~~~~~~~~~~~~G~~l 32 (322)
...++...+|.+|.++
T Consensus 11 lsfglifvgwglgall 26 (32)
T d2e74f1 11 LSFGLIFVGWGLGVLL 26 (32)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHhHHHHHH
Done!