BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 042031
         (565 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1ARK|A Chain A, Sh3 Domain From Human Nebulin, Nmr, 15 Structures
 pdb|1NEB|A Chain A, Sh3 Domain From Human Nebulin, Nmr, Minimized Average
           Structure
          Length = 60

 Score = 33.1 bits (74), Expect = 0.41,   Method: Composition-based stats.
 Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 1/40 (2%)

Query: 193 SIGSLFLIVHQYMGVDAEDALFPLAIAIVDVES-DENWMW 231
           + G +F  ++ YM  DA++  F    AI++V++ DE WM+
Sbjct: 1   TAGKIFRAMYDYMAADADEVSFKDGDAIINVQAIDEGWMY 40


>pdb|3EL6|A Chain A, Crystal Structure Of The Erythromycin Dehydratase
          Length = 313

 Score = 30.4 bits (67), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 32/116 (27%), Positives = 47/116 (40%), Gaps = 16/116 (13%)

Query: 77  GVPTFSIRTLHGEHTCEGVQNLHHQQAS---VGWVARSVEARIRDNPQYKPKEILQDIRD 133
           G P  S R     H  E V +L   Q S    G +A+ V A  RD  Q+ P++ ++   D
Sbjct: 121 GAPDESGRRTIDVHAAEDVADLADAQWSQHATGTLAQGVAAGPRDTEQWPPEDAVRIPLD 180

Query: 134 QH--GVA----------VSYMQAWRGKERSMAALH-GTYEEGYRLLPAYCEQIRKT 176
            H  G+A           +   AWR  +   A +     EEGY   P   + + +T
Sbjct: 181 DHYDGLAEQGYEYGPSFQALRAAWRKDDSVYAEVSIAADEEGYAFHPVLLDAVAQT 236


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.136    0.429 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,227,822
Number of Sequences: 62578
Number of extensions: 635610
Number of successful extensions: 1957
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1955
Number of HSP's gapped (non-prelim): 15
length of query: 565
length of database: 14,973,337
effective HSP length: 104
effective length of query: 461
effective length of database: 8,465,225
effective search space: 3902468725
effective search space used: 3902468725
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (25.4 bits)