BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042031
(565 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P20929|NEBU_HUMAN Nebulin OS=Homo sapiens GN=NEB PE=1 SV=4
Length = 6669
Score = 39.7 bits (91), Expect = 0.069, Method: Composition-based stats.
Identities = 40/148 (27%), Positives = 58/148 (39%), Gaps = 33/148 (22%)
Query: 117 RDNP----QYKPKEILQDIRDQHGVAVSYMQAWRGKERSMAALH---------------- 156
R NP Y P E R H + V + R + RS +AL
Sbjct: 6502 RTNPGSVFDYDPAEDNIQSRSLHMINVQAQRRSREQSRSASALSISGGEEKSEHSEAPDH 6561
Query: 157 --GTYEEG--YRLLPAYCEQIRKTNPGSIASVFATGQKIVS--------IGSLFLIVHQY 204
TY +G + + AY P +S AT Q VS G +F ++ Y
Sbjct: 6562 HLSTYSDGGVFAVSTAYKHAKTTELPQQRSSSVATQQTTVSSIPSHPSTAGKIFRAMYDY 6621
Query: 205 MGVDAEDALFPLAIAIVDVES-DENWMW 231
M DA++ F AI++V++ DE WM+
Sbjct: 6622 MAADADEVSFKDGDAIINVQAIDEGWMY 6649
>sp|Q9SWG3|FAR1_ARATH Protein FAR-RED IMPAIRED RESPONSE 1 OS=Arabidopsis thaliana GN=FAR1
PE=1 SV=1
Length = 827
Score = 39.3 bits (90), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 58/312 (18%), Positives = 121/312 (38%), Gaps = 63/312 (20%)
Query: 204 YMGVDAEDALFPLAIAIVDVESDENWMWFMSELRKLLGVNTDNMPRLTILSERQRGIVEA 263
++GV+ L A+V ES E ++W + + +G P++ IL+++ + ++ A
Sbjct: 294 FIGVNHHSQPMLLGCALVADESMETFVWLIKTWLRAMG---GRAPKV-ILTDQDKFLMSA 349
Query: 264 VETHFPSAFHCFCLRYVSENFRDTF-----KNTKLVNIFWNAVY-ALTTVEFEAKISEMV 317
V P+ HCF L +V E + F ++ + F ++ + T EF+ + +MV
Sbjct: 350 VSELLPNTRHCFALWHVLEKIPEYFSHVMKRHENFLLKFNKCIFRSWTDDEFDMRWWKMV 409
Query: 318 -EISQDVIPWF-------QQFPPQLWAIAYFEGV--------------RYGHFTLGVTEL 355
+ + W Q++ P + + G+ +Y H + + E
Sbjct: 410 SQFGLENDEWLLWLHEHRQKWVPTFMSDVFLAGMSTSQRSESVNSFFDKYIHKKITLKEF 469
Query: 356 LYNWAL---------------ECHELPVVQMMEYIRHQLTSWFNDRREMGMRWTSILVPS 400
L + + CH+ P ++ + W ++M +T +
Sbjct: 470 LRQYGVILQNRYEEESVADFDTCHKQPALK-------SPSPW---EKQMATTYTHTIFKK 519
Query: 401 TERQIMEAIADARCYQVLRANEIEFEIVSTERTNIVDI-----RSRVCS-CRRWQLYGLP 454
+ +++ +A + N F + E+ + + +S +C CR ++ G
Sbjct: 520 FQVEVLGVVACHPRKEKEDENMATFRVQDCEKDDDFLVTWSKTKSELCCFCRMFEYKGFL 579
Query: 455 CAHAAAALLSCG 466
C HA L CG
Sbjct: 580 CRHALMILQMCG 591
>sp|Q6L1X8|RLA0_PICTO Acidic ribosomal protein P0 homolog OS=Picrophilus torridus (strain
ATCC 700027 / DSM 9790 / JCM 10055 / NBRC 100828)
GN=rplP0 PE=3 SV=1
Length = 315
Score = 37.0 bits (84), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 69/159 (43%), Gaps = 36/159 (22%)
Query: 372 MEYIRHQLTSWFNDRREMGMRWTSILVPSTERQIMEAIADARCYQVLRANEIEFEIVSTE 431
++++++ L + N R+ + L + ++I +I D +V RA + I +T
Sbjct: 9 IDFVKN-LENEINSRKVAAIVSIKGLRNNEFQKIRNSIRDKARIKVSRARLLRLAIENTG 67
Query: 432 RTNIVDIRSRVCSCRRWQLYGLPCAHAAAALLSCGQNVHLFAEPCFTVASYRETYSQMIN 491
+ NIV ++ AH AL++ + S ++ Y
Sbjct: 68 KNNIVKLKD--------------YAHGQVALITTDE-------------SPKKIYD---- 96
Query: 492 AIPDKSRWKEPGEGAEGGVAKLDITIRPPKTRRPPGRPK 530
I +KS+ K P +G E +A+ DI I P +T PPG PK
Sbjct: 97 -ILEKSKTKAPAKGGE--IAEEDIVIEPKETNFPPG-PK 131
>sp|Q6A1G3|FUT10_XENTR Alpha-(1,3)-fucosyltransferase 10 OS=Xenopus tropicalis GN=fut10
PE=2 SV=1
Length = 471
Score = 36.2 bits (82), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 6/88 (6%)
Query: 215 PLAIAIVDVESDENWMWFMSELRKLLGVNTDNMPRLTILSERQRGIVEAVETHFPSAFHC 274
P +A + D+N +M + L N +N L+ ++ER+ G+ + + ++ AF C
Sbjct: 322 PKELATYIKKLDKNDKLYMQFIEWKLHGNINNKHLLSTITERKWGVQDVTQDNYIDAFEC 381
Query: 275 FCLRYVSENFR--DTFKNTKLVNIFWNA 300
+ V EN R D TKL WNA
Sbjct: 382 MICKRVWENVRLKDRVSTTKL----WNA 405
>sp|Q8BTW8|CK5P1_MOUSE CDK5 regulatory subunit-associated protein 1 OS=Mus musculus
GN=Cdk5rap1 PE=2 SV=2
Length = 588
Score = 35.8 bits (81), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 43/82 (52%), Gaps = 9/82 (10%)
Query: 113 EARIR---DNPQYKPKEILQDIRDQHGVAVS-YMQAWRGKERSMAALHGTYE-EGYRLLP 167
E RIR +P+ P E+LQ IR++H + ++ A G R + A+ Y E Y
Sbjct: 352 EMRIRFTSPHPKDFPDEVLQLIRERHNICKQIHLPAQSGSSRVLDAMRRGYSREAY---V 408
Query: 168 AYCEQIRKTNPG-SIASVFATG 188
A +R+T PG S++S F TG
Sbjct: 409 ALVHHVRETIPGVSLSSDFITG 430
>sp|P40434|YIR7_YEAST Y' element ATP-dependent helicase YIL177C OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=YIL177C PE=2 SV=1
Length = 1758
Score = 34.3 bits (77), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 105 VGWVARSVEARIRDNPQYKPKEILQDIRDQHGVAVSYMQAWRGKERSM 152
+ W A +VE +R++ +YK E L+DI HG V Y++ + K R +
Sbjct: 1473 IAWEALAVERMLRNDEEYK--EYLEDIEPYHGDPVGYLKYFSVKRREI 1518
>sp|P40889|YJW5_YEAST Y' element ATP-dependent helicase YJL225C OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=YJL225C PE=2 SV=2
Length = 1758
Score = 33.9 bits (76), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 105 VGWVARSVEARIRDNPQYKPKEILQDIRDQHGVAVSYMQAWRGKERSM 152
+ W A +VE +R++ +YK E L+DI HG V Y++ + K R +
Sbjct: 1473 IAWEALAVERMLRNDEEYK--EYLEDIEPYHGDPVGYLKYFSVKRREI 1518
>sp|Q7M4S9|YB113_YEAST Uncharacterized protein YBL113C OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=YBL113C PE=4 SV=1
Length = 792
Score = 33.5 bits (75), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 105 VGWVARSVEARIRDNPQYKPKEILQDIRDQHGVAVSYMQAWRGKERSM 152
+ W A +VE +R++ +YK E L+DI HG V Y++ + K R +
Sbjct: 506 IAWEALAVERMLRNDEEYK--EYLEDIEPYHGDPVGYLKYFSVKRREI 551
>sp|P38721|YHF0_YEAST Uncharacterized protein YHL050C OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=YHL050C PE=4 SV=1
Length = 697
Score = 33.1 bits (74), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 105 VGWVARSVEARIRDNPQYKPKEILQDIRDQHGVAVSYMQAWRGKERSM 152
+ W A +VE +R++ +YK E L+DI HG V Y++ + K R +
Sbjct: 411 MAWEALAVERMLRNDEEYK--EYLEDIEPYHGDPVGYLKFFSVKRREI 456
>sp|Q3E7X8|YE077_YEAST Y' element ATP-dependent helicase YEL077C OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=YEL077C PE=2 SV=1
Length = 1277
Score = 33.1 bits (74), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 105 VGWVARSVEARIRDNPQYKPKEILQDIRDQHGVAVSYMQAWRGKERSM 152
+ W A +VE +R++ +YK E L+DI HG V Y++ + K R +
Sbjct: 991 MAWEALAVERMLRNDEEYK--EYLEDIEPYHGDPVGYLKYFSVKRREI 1036
>sp|P21331|GAGJ_DROFU Nucleic-acid-binding protein from mobile element jockey
OS=Drosophila funebris GN=gag PE=4 SV=1
Length = 574
Score = 32.7 bits (73), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 536 VENFKRPKRIVQCGRCHLLGHSQKKC 561
VE R + ++QC RCH+ GHS+ C
Sbjct: 381 VERAPRRREVLQCLRCHIFGHSKNYC 406
>sp|O41798|POL_HV19N Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype G (isolate 92NG083) GN=gag-pol PE=3 SV=3
Length = 1435
Score = 32.3 bits (72), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 538 NFKRPKRIVQCGRCHLLGHSQKKCTMP 564
NFK P+RI++C C GH + C P
Sbjct: 383 NFKGPRRIIKCFNCGKEGHLARNCRAP 409
>sp|Q6NTZ6|FUT10_XENLA Alpha-(1,3)-fucosyltransferase 10 OS=Xenopus laevis GN=fut10 PE=2
SV=2
Length = 469
Score = 32.3 bits (72), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 6/88 (6%)
Query: 215 PLAIAIVDVESDENWMWFMSELRKLLGVNTDNMPRLTILSERQRGIVEAVETHFPSAFHC 274
P +A + D+N +M + L N +N ++ ++ER+ G+ + + ++ AF C
Sbjct: 320 PKDLAAYIKKLDKNDTLYMQFIEWKLHGNINNKRLVSAITERKWGVQDVTQDNYIDAFEC 379
Query: 275 FCLRYVSENFR--DTFKNTKLVNIFWNA 300
+ V EN R + +TKL WNA
Sbjct: 380 MVCKRVCENVRLKEQGPSTKL----WNA 403
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.136 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 210,455,373
Number of Sequences: 539616
Number of extensions: 8756635
Number of successful extensions: 25663
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 25648
Number of HSP's gapped (non-prelim): 25
length of query: 565
length of database: 191,569,459
effective HSP length: 123
effective length of query: 442
effective length of database: 125,196,691
effective search space: 55336937422
effective search space used: 55336937422
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 64 (29.3 bits)