BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042033
(490 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4F9I|A Chain A, Crystal Structure Of Proline Utilization A (Puta) From
Geobacter Sulfurreducens Pca
pdb|4F9I|B Chain B, Crystal Structure Of Proline Utilization A (Puta) From
Geobacter Sulfurreducens Pca
Length = 1026
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 58/215 (26%), Positives = 98/215 (45%), Gaps = 23/215 (10%)
Query: 258 RLQKLCQECLEANVPLTVDAE---------DTFVQPAIDYLTYNAALSNNKAGKPIVYNT 308
R++++ ++ +E N L +D E + F + ++Y Y P +
Sbjct: 248 RMRRIFKKVMELNGFLCIDMESYRHKEIILEVFRRLKLEYRDY-----------PHLGIV 296
Query: 309 IQAYLKDAKERLFLATEAAEKMGVPMGFKLVRGAYMSSESKLAASLGFDSPIHNSIQETH 368
+QAYLKD + L A++ V + +LV+GAY E+ A ++ P+ E+
Sbjct: 297 LQAYLKDNDKDLDDLLAWAKEHKVQISVRLVKGAYWDYETVKAKQNDWEVPVWTIKAESD 356
Query: 369 ACYNDCASYMLEKIADGSGAVVLATHNVESGQLAAAKATDLGIKGDQKLEFAQLYGMAEA 428
A Y A +LE A A+HN+ + A +L + D + EF LYGMAE
Sbjct: 357 AAYERQARKILENHQICHFAC--ASHNIRTISAVMEMARELNVPED-RYEFQVLYGMAEP 413
Query: 429 LSYGLRNAGFQVSKYMPFGPVDKIIPYLLRRAEEN 463
+ G+ ++ Y P+G + + YL+RR EN
Sbjct: 414 VRKGILKVAGRIRLYAPYGNMVPGMGYLVRRLLEN 448
>pdb|3HAZ|A Chain A, Crystal Structure Of Bifunctional Proline Utilization A
(Puta) Protein
pdb|3HAZ|B Chain B, Crystal Structure Of Bifunctional Proline Utilization A
(Puta) Protein
Length = 1001
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 63/213 (29%), Positives = 90/213 (42%), Gaps = 18/213 (8%)
Query: 258 RLQKLCQECLEANVPLTVDAEDT-FVQPAIDYLTYNAALSNNKAGKPIVYNTIQAYLKDA 316
+L L Q ++ TVDAE+ ++ ++D + A + K G IQAY K A
Sbjct: 262 QLLDLAQRAKAHDLNFTVDAEEADRLELSLDVIAATLADPSLK-GWDGFGLAIQAYQKRA 320
Query: 317 KERLFLATEAAEKMGVPMGFKLVRGAYMSSESKLAASLGFDS-PIHNSIQETHACYNDCA 375
+ A + +LV+GAY +E K A G D P+ T Y CA
Sbjct: 321 SAVIDYVDALARAHDRKLMVRLVKGAYWDTEIKRAQERGLDGYPVFTRKAMTDLNYVACA 380
Query: 376 SYMLE---KIADGSGAVVLATHNVESGQLAAAKATDLGIKGDQKLEFAQLYGMAEALSYG 432
S +L +I ATHN L A ++ +G EF +L+GM EAL
Sbjct: 381 SKLLALRPRIFP-----QFATHNA----LTVATVLEMA-EGSSGFEFQRLHGMGEALYEQ 430
Query: 433 LR--NAGFQVSKYMPFGPVDKIIPYLLRRAEEN 463
L +A Y P G ++ YL+RR EN
Sbjct: 431 LAKDHADIAYRTYAPVGSHRDLLAYLVRRLLEN 463
>pdb|1TJ2|A Chain A, Crystal Structure Of E. Coli Puta Proline Dehydrogenase
Domain (Residues 86-669) Complexed With Acetate
Length = 584
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 59/231 (25%), Positives = 99/231 (42%), Gaps = 25/231 (10%)
Query: 247 QEENELQSAHQRLQKLCQECLEANVPLTVDAEDT-FVQPAIDYLTYNAALSNNKAGKPIV 305
Q + ++ + RL+ L + ++ + +DAE++ ++ ++D L AG +
Sbjct: 256 QYDRVMEELYPRLKSLTLLARQYDIGINIDAEESDRLEISLDLLE-KLCFEPELAGWNGI 314
Query: 306 YNTIQAYLKDAKERLFLATEAAEKMGVPMGFKLVRGAYMSSESKLAASLGFDS-PIHNSI 364
IQAY K + + A + + +LV+GAY SE K A G + P++
Sbjct: 315 GFVIQAYQKRCPLVIDYLIDLATRSRRRLMIRLVKGAYWDSEIKRAQMDGLEGYPVYTRK 374
Query: 365 QETHACYNDCASYMLEKIADGSGAV------VLATHNVESGQLAAAKATDLGIKGDQKLE 418
T Y CA +L AV ATHN + LAA + E
Sbjct: 375 VYTDVSYLACAKKLL--------AVPNLIYPQFATHNAHT--LAAIYQLAGQNYYPGQYE 424
Query: 419 FAQLYGMAEALSYGL--RNAGFQVSK----YMPFGPVDKIIPYLLRRAEEN 463
F L+GM E L + + A ++++ Y P G + ++ YL+RR EN
Sbjct: 425 FQCLHGMGEPLYEQVTGKVADGKLNRPCRIYAPVGTHETLLAYLVRRLLEN 475
>pdb|1TIW|A Chain A, Crystal Structure Of E. Coli Puta Proline Dehydrogenase
Domain (Residues 86-669) Complexed With
L-Tetrahydro-2-Furoic Acid
pdb|1TJ0|A Chain A, Crystal Structure Of E. Coli Puta Proline Dehydrogenase
Domain (Residues 86-669) Co-Crystallized With L-Lactate
pdb|1TJ1|A Chain A, Crystal Structure Of E. Coli Puta Proline Dehydrogenase
Domain (Residues 86-669) Complexed With L-Lactate
pdb|2FZN|A Chain A, Structure Of The E. Coli Puta Proline Dehydrogenase Domain
Reduced By Dithionite And Complexed With Proline
pdb|2FZM|A Chain A, Structure Of The E. Coli Puta Proline Dehydrogenase Domain
Reduced By Dithionite And Complexed With So2
Length = 602
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 59/231 (25%), Positives = 99/231 (42%), Gaps = 25/231 (10%)
Query: 247 QEENELQSAHQRLQKLCQECLEANVPLTVDAEDT-FVQPAIDYLTYNAALSNNKAGKPIV 305
Q + ++ + RL+ L + ++ + +DAE++ ++ ++D L AG +
Sbjct: 256 QYDRVMEELYPRLKSLTLLARQYDIGINIDAEESDRLEISLDLLE-KLCFEPELAGWNGI 314
Query: 306 YNTIQAYLKDAKERLFLATEAAEKMGVPMGFKLVRGAYMSSESKLAASLGFDS-PIHNSI 364
IQAY K + + A + + +LV+GAY SE K A G + P++
Sbjct: 315 GFVIQAYQKRCPLVIDYLIDLATRSRRRLMIRLVKGAYWDSEIKRAQMDGLEGYPVYTRK 374
Query: 365 QETHACYNDCASYMLEKIADGSGAV------VLATHNVESGQLAAAKATDLGIKGDQKLE 418
T Y CA +L AV ATHN + LAA + E
Sbjct: 375 VYTDVSYLACAKKLL--------AVPNLIYPQFATHNAHT--LAAIYQLAGQNYYPGQYE 424
Query: 419 FAQLYGMAEALSYGL--RNAGFQVSK----YMPFGPVDKIIPYLLRRAEEN 463
F L+GM E L + + A ++++ Y P G + ++ YL+RR EN
Sbjct: 425 FQCLHGMGEPLYEQVTGKVADGKLNRPCRIYAPVGTHETLLAYLVRRLLEN 475
>pdb|3ITG|A Chain A, Structure The Proline Utilization A Proline Dehydrogenase
Domain (Puta86-630) Inactivated With N-Propargylglycine
pdb|3ITG|B Chain B, Structure The Proline Utilization A Proline Dehydrogenase
Domain (Puta86-630) Inactivated With N-Propargylglycine
Length = 602
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 59/231 (25%), Positives = 99/231 (42%), Gaps = 25/231 (10%)
Query: 247 QEENELQSAHQRLQKLCQECLEANVPLTVDAEDT-FVQPAIDYLTYNAALSNNKAGKPIV 305
Q + ++ + RL+ L + ++ + +DAE++ ++ ++D L AG +
Sbjct: 256 QYDRVMEELYPRLKSLTLLARQYDIGINIDAEESDRLEISLDLLE-KLCFEPELAGWNGI 314
Query: 306 YNTIQAYLKDAKERLFLATEAAEKMGVPMGFKLVRGAYMSSESKLAASLGFDS-PIHNSI 364
IQAY K + + A + + +LV+GAY SE K A G + P++
Sbjct: 315 GFVIQAYQKRCPLVIDYLIDLATRSRRRLMIRLVKGAYWDSEIKRAQMDGLEGYPVYTRK 374
Query: 365 QETHACYNDCASYMLEKIADGSGAV------VLATHNVESGQLAAAKATDLGIKGDQKLE 418
T Y CA +L AV ATHN + LAA + E
Sbjct: 375 VYTDVSYLACAKKLL--------AVPNLIYPQFATHNAHT--LAAIYQLAGQNYYPGQYE 424
Query: 419 FAQLYGMAEALSYGL--RNAGFQVSK----YMPFGPVDKIIPYLLRRAEEN 463
F L+GM E L + + A ++++ Y P G + ++ YL+RR EN
Sbjct: 425 FQCLHGMGEPLYEQVTGKVADGKLNRPCRIYAPVGTHETLLAYLVRRLLEN 475
>pdb|1K87|A Chain A, Crystal Structure Of E.coli Puta (residues 1-669)
Length = 669
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 59/231 (25%), Positives = 98/231 (42%), Gaps = 25/231 (10%)
Query: 247 QEENELQSAHQRLQKLCQECLEANVPLTVDAEDT-FVQPAIDYLTYNAALSNNKAGKPIV 305
Q + ++ + RL+ L + ++ + +DAE+ ++ ++D L AG +
Sbjct: 341 QYDRVMEELYPRLKSLTLLARQYDIGINIDAEEADRLEISLDLLE-KLCFEPELAGWNGI 399
Query: 306 YNTIQAYLKDAKERLFLATEAAEKMGVPMGFKLVRGAYMSSESKLAASLGFDS-PIHNSI 364
IQAY K + + A + + +LV+GAY SE K A G + P++
Sbjct: 400 GFVIQAYQKRCPLVIDYLIDLATRSRRRLMIRLVKGAYWDSEIKRAQMDGLEGYPVYTRK 459
Query: 365 QETHACYNDCASYMLEKIADGSGAV------VLATHNVESGQLAAAKATDLGIKGDQKLE 418
T Y CA +L AV ATHN + LAA + E
Sbjct: 460 VYTDVSYLACAKKLL--------AVPNLIYPQFATHNAHT--LAAIYQLAGQNYYPGQYE 509
Query: 419 FAQLYGMAEALSYGL--RNAGFQVSK----YMPFGPVDKIIPYLLRRAEEN 463
F L+GM E L + + A ++++ Y P G + ++ YL+RR EN
Sbjct: 510 FQCLHGMGEPLYEQVTGKVADGKLNRPCRIYAPVGTHETLLAYLVRRLLEN 560
>pdb|3E2Q|A Chain A, Crystal Structure Reduced Puta86-630 Mutant Y540s
Complexed With Trans-4-Hydroxy-L-Proline
pdb|3E2R|A Chain A, Crystal Structure Puta86-630 Mutant Y540s Complexed With
L-Tetrahydro- 2-Furoic Acid
pdb|3E2S|A Chain A, Crystal Structure Reduced Puta86-630 Mutant Y540s
Complexed With L- Proline
Length = 551
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 60/233 (25%), Positives = 97/233 (41%), Gaps = 29/233 (12%)
Query: 247 QEENELQSAHQRLQKLCQECLEANVPLTVDAEDT-FVQPAIDYLTYNAALSNNKAGKPIV 305
Q + ++ + RL+ L + ++ + +DAE++ ++ ++D L AG +
Sbjct: 256 QYDRVMEELYPRLKSLTLLARQYDIGINIDAEESDRLEISLDLLE-KLCFEPELAGWNGI 314
Query: 306 YNTIQAYLKDAKERLFLATEAAEKMGVPMGFKLVRGAYMSSESKLAASLGFDS-PIHNSI 364
IQAY K + + A + + +LV+GAY SE K A G + P++
Sbjct: 315 GFVIQAYQKRCPLVIDYLIDLATRSRRRLMIRLVKGAYWDSEIKRAQMDGLEGYPVYTRK 374
Query: 365 QETHACYNDCASYMLEKIADGSGAV------VLATHNVESGQLAAAKATDLGIKGDQKLE 418
T Y CA +L AV ATHN + LAA + E
Sbjct: 375 VYTDVSYLACAKKLL--------AVPNLIYPQFATHNAHT--LAAIYQLAGQNYYPGQYE 424
Query: 419 FAQLYGMAEAL--------SYGLRNAGFQVSKYMPFGPVDKIIPYLLRRAEEN 463
F L+GM E L + G N ++S P G + ++ YL+RR EN
Sbjct: 425 FQCLHGMGEPLYEQVTGKVADGKLNRPCRISA--PVGTHETLLAYLVRRLLEN 475
>pdb|2YFH|A Chain A, Structure Of A Chimeric Glutamate Dehydrogenase
pdb|2YFH|B Chain B, Structure Of A Chimeric Glutamate Dehydrogenase
pdb|2YFH|C Chain C, Structure Of A Chimeric Glutamate Dehydrogenase
pdb|2YFH|D Chain D, Structure Of A Chimeric Glutamate Dehydrogenase
pdb|2YFH|E Chain E, Structure Of A Chimeric Glutamate Dehydrogenase
pdb|2YFH|F Chain F, Structure Of A Chimeric Glutamate Dehydrogenase
Length = 448
Score = 32.0 bits (71), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 15/125 (12%)
Query: 243 PLTLQEENELQSAHQRLQKLCQECLE-ANVPLTVDAEDTFVQPAIDYLTYNAALSNNKA- 300
P Q E ++ +AHQ + + E AN+P T++A + F Q + + AA + A
Sbjct: 319 PCATQNELDVDAAHQLIANGVKAVAEGANMPTTIEATELFQQAGVLFAPGKAANAGGVAT 378
Query: 301 -GKPIVYNTIQAYLK----DAKERLFL------ATEAAEKMGVPMGFKLVRGAYMSSESK 349
G + N + K DA+ + + AAE+ G +G+ LV GA + K
Sbjct: 379 SGLEMAQNAARLGWKAEKVDARLHHIMTDIHDGSAAAAERYG--LGYNLVAGANIVGFQK 436
Query: 350 LAASL 354
+A ++
Sbjct: 437 IADAM 441
>pdb|2X7F|A Chain A, Crystal Structure Of The Kinase Domain Of Human Traf2- And
Nck-Interacting Kinase With Wee1chk1 Inhibitor
pdb|2X7F|B Chain B, Crystal Structure Of The Kinase Domain Of Human Traf2- And
Nck-Interacting Kinase With Wee1chk1 Inhibitor
pdb|2X7F|C Chain C, Crystal Structure Of The Kinase Domain Of Human Traf2- And
Nck-Interacting Kinase With Wee1chk1 Inhibitor
pdb|2X7F|D Chain D, Crystal Structure Of The Kinase Domain Of Human Traf2- And
Nck-Interacting Kinase With Wee1chk1 Inhibitor
pdb|2X7F|E Chain E, Crystal Structure Of The Kinase Domain Of Human Traf2- And
Nck-Interacting Kinase With Wee1chk1 Inhibitor
Length = 326
Score = 32.0 bits (71), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 378 MLEKIADGSGAVVLATHNVESGQLAAAKATDLGIKGDQKLEFAQLYGMAEALSY 431
++E + +G+ V +V++GQLAA K D + GD++ E Q M + S+
Sbjct: 28 LVELVGNGTYGQVYKGRHVKTGQLAAIKVMD--VTGDEEEEIKQEINMLKKYSH 79
>pdb|4FSX|A Chain A, Crystal Structure Of Se-Substituted Zea Mays Zmet2 In
Complex With Sah
pdb|4FSX|B Chain B, Crystal Structure Of Se-Substituted Zea Mays Zmet2 In
Complex With Sah
Length = 784
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 154 EHTDDVSECEQNLQGFLQTVQSAKSLPPESASFVIAKISAICPMSLLQRVSDLLRWQQRD 213
E D++S+C Q ++ F+Q K LP + + IC Q +S R++ RD
Sbjct: 349 EPIDNLSDCPQKIREFVQEGHKRKILP------LPGDVDVICGGPPCQGISGFNRYRNRD 402
>pdb|4FT2|A Chain A, Crystal Structure Of Zea Mays Zmet2 In Complex
H3(1-15)k9me2 Peptide And Sah
pdb|4FT2|B Chain B, Crystal Structure Of Zea Mays Zmet2 In Complex
H3(1-15)k9me2 Peptide And Sah
pdb|4FT4|B Chain B, Crystal Structure Of Zea Mays Zmet2 In Complex
H3(1-32)k9me2 Peptide And Sah
pdb|4FT4|A Chain A, Crystal Structure Of Zea Mays Zmet2 In Complex
H3(1-32)k9me2 Peptide And Sah
Length = 784
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 154 EHTDDVSECEQNLQGFLQTVQSAKSLPPESASFVIAKISAICPMSLLQRVSDLLRWQQRD 213
E D++S+C Q ++ F+Q K LP + + IC Q +S R++ RD
Sbjct: 349 EPIDNLSDCPQKIREFVQEGHKRKILP------LPGDVDVICGGPPCQGISGFNRYRNRD 402
>pdb|4H6Q|A Chain A, Structure Of Oxidized Deinococcus Radiodurans Proline
Dehydrogenase Complexed With L-Tetrahydrofuroic Acid
pdb|4H6Q|C Chain C, Structure Of Oxidized Deinococcus Radiodurans Proline
Dehydrogenase Complexed With L-Tetrahydrofuroic Acid
pdb|4H6R|A Chain A, Structure Of Reduced Deinococcus Radiodurans Proline
Dehydrogenase
pdb|4H6R|C Chain C, Structure Of Reduced Deinococcus Radiodurans Proline
Dehydrogenase
Length = 312
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 413 GDQKLEFAQLYGMAEALSYGLRNAGFQVSKYMPFG 447
G EF LYG+ L L G++V Y+P+G
Sbjct: 250 GKDAFEFQMLYGIRRDLQKQLAAEGYRVRVYLPYG 284
>pdb|3K9D|A Chain A, Crystal Structure Of Probable Aldehyde Dehydrogenase From
Listeria Monocytogenes Egd-E
pdb|3K9D|B Chain B, Crystal Structure Of Probable Aldehyde Dehydrogenase From
Listeria Monocytogenes Egd-E
pdb|3K9D|C Chain C, Crystal Structure Of Probable Aldehyde Dehydrogenase From
Listeria Monocytogenes Egd-E
pdb|3K9D|D Chain D, Crystal Structure Of Probable Aldehyde Dehydrogenase From
Listeria Monocytogenes Egd-E
Length = 464
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 40/90 (44%), Gaps = 13/90 (14%)
Query: 246 LQEENELQSAHQRLQKLCQECLEANVPLTVDAEDTFVQPAIDYLTYNAALSNNKAGKPIV 305
L+E+NE ++ +E VPL V A + Y +S KAG IV
Sbjct: 94 LKEDNE------------KKVMEVAVPLGVVAGLIPSTNPTSTVIYKTLISI-KAGNSIV 140
Query: 306 YNTIQAYLKDAKERLFLATEAAEKMGVPMG 335
++ LK E + + +EAAEK G P G
Sbjct: 141 FSPHPNALKAILETVRIISEAAEKAGCPKG 170
>pdb|2EKG|A Chain A, Structure Of Thermus Thermophilus Proline Dehydrogenase
Inactivated By N-propargylglycine
pdb|2EKG|B Chain B, Structure Of Thermus Thermophilus Proline Dehydrogenase
Inactivated By N-propargylglycine
Length = 327
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 36/92 (39%), Gaps = 4/92 (4%)
Query: 373 DCASYMLEKIADGSGA-VVLATHNVESGQLAAAKATDLGIKGDQKLEFAQLYGMAEALSY 431
D L K+A G V ATH+ +GI + EF LYG+
Sbjct: 225 DAEYLHLGKLALKEGLYVAFATHDPRIIAELKRYTEAMGIP-RSRFEFQFLYGVRPEEQR 283
Query: 432 GLRNAGFQVSKYMPFGPVDKIIPYLLRRAEEN 463
L G+ V Y+P+G PYL RR E
Sbjct: 284 RLAREGYTVRAYVPYG--RDWYPYLTRRIAER 313
>pdb|2G37|A Chain A, Structure Of Thermus Thermophilus L-Proline Dehydrogenase
pdb|2G37|B Chain B, Structure Of Thermus Thermophilus L-Proline Dehydrogenase
Length = 327
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 36/92 (39%), Gaps = 4/92 (4%)
Query: 373 DCASYMLEKIADGSGA-VVLATHNVESGQLAAAKATDLGIKGDQKLEFAQLYGMAEALSY 431
D L K+A G V ATH+ +GI + EF LYG+
Sbjct: 225 DAEYLHLGKLALKEGLYVAFATHDPRIIAELKRYTEAMGIP-RSRFEFQFLYGVRPEEQR 283
Query: 432 GLRNAGFQVSKYMPFGPVDKIIPYLLRRAEEN 463
L G+ V Y+P+G PYL RR E
Sbjct: 284 RLAREGYTVRAYVPYG--RDWYPYLTRRIAER 313
>pdb|3IDE|A Chain A, Structure Of Ipnv Subviral Particle
pdb|3IDE|B Chain B, Structure Of Ipnv Subviral Particle
pdb|3IDE|C Chain C, Structure Of Ipnv Subviral Particle
pdb|3IDE|D Chain D, Structure Of Ipnv Subviral Particle
pdb|3IDE|E Chain E, Structure Of Ipnv Subviral Particle
Length = 442
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 4/75 (5%)
Query: 360 IHNSIQETHACYNDCASYMLEKIADGSGAVVL--ATHNVESGQLAAAKATDLGIKGDQKL 417
I + I E H + +SY LE GSG +V G A G++ DQ L
Sbjct: 24 IPDDITERHILKQETSSYNLEVSESGSGVLVCFPGAPGSRIGAHYRWNANQTGLEFDQWL 83
Query: 418 EFAQLYGMAEALSYG 432
E +Q + +A +YG
Sbjct: 84 ETSQ--DLKKAFNYG 96
>pdb|4FCC|A Chain A, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|B Chain B, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|C Chain C, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|D Chain D, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|E Chain E, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|F Chain F, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|G Chain G, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|H Chain H, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|I Chain I, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|J Chain J, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|K Chain K, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|L Chain L, Glutamate Dehydrogenase From E. Coli
pdb|4FHN|X Chain X, Nup37-Nup120 Full-Length Complex From Schizosaccharomyces
Pombe
Length = 450
Score = 28.9 bits (63), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 243 PLTLQEENELQSAHQRLQKLCQECLE-ANVPLTVDAEDTFVQPAIDYLTYNAA 294
P Q E ++ +AHQ + + E AN+P T++A + F Q + + AA
Sbjct: 323 PCATQNELDVDAAHQLIANGVKAVAEGANMPTTIEATELFQQAGVLFAPGKAA 375
>pdb|3SBO|A Chain A, Structure Of E.Coli Gdh From Native Source
pdb|3SBO|B Chain B, Structure Of E.Coli Gdh From Native Source
pdb|3SBO|C Chain C, Structure Of E.Coli Gdh From Native Source
pdb|3SBO|D Chain D, Structure Of E.Coli Gdh From Native Source
pdb|3SBO|E Chain E, Structure Of E.Coli Gdh From Native Source
pdb|3SBO|F Chain F, Structure Of E.Coli Gdh From Native Source
pdb|2YFG|A Chain A, Structural Determinants Of Cofactor Specificity And Domain
Flexibility In Bacterial Glutamate Dehydrogenases
pdb|2YFG|B Chain B, Structural Determinants Of Cofactor Specificity And Domain
Flexibility In Bacterial Glutamate Dehydrogenases
pdb|2YFG|C Chain C, Structural Determinants Of Cofactor Specificity And Domain
Flexibility In Bacterial Glutamate Dehydrogenases
pdb|2YFG|D Chain D, Structural Determinants Of Cofactor Specificity And Domain
Flexibility In Bacterial Glutamate Dehydrogenases
pdb|2YFG|F Chain F, Structural Determinants Of Cofactor Specificity And Domain
Flexibility In Bacterial Glutamate Dehydrogenases
Length = 447
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 243 PLTLQEENELQSAHQRLQKLCQECLE-ANVPLTVDAEDTFVQPAIDYLTYNAA 294
P Q E ++ +AHQ + + E AN+P T++A + F Q + + AA
Sbjct: 320 PCATQNELDVDAAHQLIANGVKAVAEGANMPTTIEATELFQQAGVLFAPGKAA 372
>pdb|2YFG|E Chain E, Structural Determinants Of Cofactor Specificity And Domain
Flexibility In Bacterial Glutamate Dehydrogenases
Length = 447
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 243 PLTLQEENELQSAHQRLQKLCQECLE-ANVPLTVDAEDTFVQPAIDYLTYNAA 294
P Q E ++ +AHQ + + E AN+P T++A + F Q + + AA
Sbjct: 320 PCATQNELDVDAAHQLIANGVKAVAEGANMPTTIEATELFQQAGVLFAPGKAA 372
>pdb|3SN0|A Chain A, Crystal Structure Of Putative L-Alanine-Dl-Glutamate
Epimerase From Burkholderia Xenovorans Strain Lb400
Bound To Magnesium And Fumarate
pdb|3SN1|A Chain A, Crystal Structure Of Putative L-Alanine-Dl-Glutamate
Epimerase From Burkholderia Xenovorans Strain Lb400
Bound To Magnesium And Tartrate
pdb|3SN4|A Chain A, Crystal Structure Of Putative L-Alanine-Dl-Glutamate
Epimerase From Burkholderia Xenovorans Strain Lb400
Bound To Magnesium And Alpha- Ketoglutarate
Length = 409
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 57/142 (40%), Gaps = 25/142 (17%)
Query: 9 KLLKNLRYFTRALNSASTTSISAVSPLNFDEKPEPTIE--------------------KP 48
K+L+NLR AL + + + LNF+ KPE ++ +
Sbjct: 194 KVLRNLRAHLEALRDGAGPDVEILLDLNFNAKPEGYLKILRELADFDLFWVEIDSYSPQG 253
Query: 49 AANRLGSSVLDINDHEKLFSLLSTTKLIRAAANLHLAAVEPLVDFGVWVMNSRLMDIDLA 108
A S I+ E LF + A A + +A V+ + + GVW + ++ A
Sbjct: 254 LAYVRNHSPHPISSCETLFGIREFKPFFDANA-VDVAIVDTIWN-GVW-QSXKIAAFADA 310
Query: 109 REVVMCTVRHSFYEHFCAGENA 130
++ + H+FY H C NA
Sbjct: 311 HDINVAP--HNFYGHLCTXINA 330
>pdb|2OO6|A Chain A, Crystal Structure Of Putative L-Alanine-Dl-Glutamate
Epimerase From Burkholderia Xenovorans Strain Lb400
pdb|3GO2|A Chain A, Crystal Structure Of Putative L-alanine-dl-glutamate
Epimerase From Burkholderia Xenovorans Strain Lb400
Bound To Magnesium
Length = 409
Score = 28.5 bits (62), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 9 KLLKNLRYFTRALNSASTTSISAVSPLNFDEKPE 42
K+L+NLR AL + + + LNF+ KPE
Sbjct: 194 KVLRNLRAHLEALRDGAGPDVEILLDLNFNAKPE 227
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.132 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,260,992
Number of Sequences: 62578
Number of extensions: 528426
Number of successful extensions: 1451
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 1436
Number of HSP's gapped (non-prelim): 36
length of query: 490
length of database: 14,973,337
effective HSP length: 103
effective length of query: 387
effective length of database: 8,527,803
effective search space: 3300259761
effective search space used: 3300259761
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)