BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042033
(490 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6NKX1|PROD2_ARATH Proline dehydrogenase 2, mitochondrial OS=Arabidopsis thaliana
GN=POX2 PE=2 SV=1
Length = 476
Score = 558 bits (1438), Expect = e-158, Method: Compositional matrix adjust.
Identities = 274/491 (55%), Positives = 368/491 (74%), Gaps = 20/491 (4%)
Query: 1 MAIRFQAPKLLKNLRYFTRALNSASTTSISAVSPLNFDEKPEPTIEKPAANRLGSSVLDI 60
MA RF P L+ R+ T + TT I + L+FD+ P+P ++ LD+
Sbjct: 1 MANRFLRPNLIH--RFSTVSPVGPPTTIIPEI--LSFDQ-PKPEVD-----------LDL 44
Query: 61 NDHEKLFSLLSTTKLIRAAANLHLAAVEPLVDFGVWVMNSRLMDIDLAREVVMCTVRHSF 120
+D +LF+ + + L+R+ A LH ++ P+VD G W+M+S+LMD + R++V+ V+ +F
Sbjct: 45 SDQARLFASVPISTLLRSTAILHATSIGPMVDLGSWLMSSKLMDTTVTRDLVLRIVKGTF 104
Query: 121 YEHFCAGENAPEATDCVRRVNDA-GLRGMLVYAVEHTDDVSECEQNLQGFLQTVQSAKSL 179
Y+HFCAGE+A A V V ++ GL+GMLVY VEH +D C++N+Q F++TV++AK+L
Sbjct: 105 YDHFCAGEDAAAAARRVSSVYESTGLKGMLVYGVEHAEDGGACDENIQKFIETVEAAKTL 164
Query: 180 PPESASFVIAKISAICPMSLLQRVSDLLRWQQRDPSFNLPWKLNNFPLFSDCSPLYHTLQ 239
P S V+ KI+AICPM++L+RVSDLLRWQ ++P+F LPWKLN+FP+FS SPLYHT
Sbjct: 165 PSSHLSSVVVKITAICPMNVLKRVSDLLRWQYKNPNFKLPWKLNSFPVFSGLSPLYHTTS 224
Query: 240 KPEPLTLQEENELQSAHQRLQKLCQECLEANVPLTVDAEDTFVQPAIDYLTY-NAALSNN 298
+PEPLT++EE EL+ AH+RL+ +C C E+NVPL +DAEDT +QPAIDY+ Y +A + N+
Sbjct: 225 EPEPLTVEEERELEKAHERLKSVCLRCQESNVPLLIDAEDTILQPAIDYMAYWSAIMFNS 284
Query: 299 KAGKPIVYNTIQAYLKDAKERLFLATEAAEKMGVPMGFKLVRGAYMSSESKLAASLGFDS 358
+PIVYNTIQAYLKDA ERL LA +EKM VP+GFKLVRGAYMSSE+KLA SLG+ S
Sbjct: 285 DKDRPIVYNTIQAYLKDAGERLHLALRESEKMNVPIGFKLVRGAYMSSEAKLADSLGYKS 344
Query: 359 PIHNSIQETHACYNDCASYMLEKIADGSG-AVVLATHNVESGQLAAAKATDLGI-KGDQK 416
P+H++IQ TH CYNDC S+++EK ++GSG AV+LATHN +SG+L A KA++LGI K + K
Sbjct: 345 PVHDTIQNTHDCYNDCMSFLMEKASNGSGIAVILATHNTDSGKLGARKASELGINKENGK 404
Query: 417 LEFAQLYGMAEALSYGLRNAGFQVSKYMPFGPVDKIIPYLLRRAEENRGFLSASNLDRQL 476
+EFAQLYGM++ALS+GL+ AGF VSKYMP+GPVD IPYL+RRA ENRG +S LDRQL
Sbjct: 405 IEFAQLYGMSDALSFGLKRAGFNVSKYMPYGPVDTAIPYLIRRAYENRGMMSTGALDRQL 464
Query: 477 MRKELMRRVNA 487
MRKEL RRV A
Sbjct: 465 MRKELKRRVMA 475
>sp|P92983|PROD1_ARATH Proline dehydrogenase 1, mitochondrial OS=Arabidopsis thaliana
GN=POX1 PE=1 SV=2
Length = 499
Score = 540 bits (1392), Expect = e-153, Method: Compositional matrix adjust.
Identities = 270/472 (57%), Positives = 360/472 (76%), Gaps = 7/472 (1%)
Query: 25 STTSISAVSP--LNFDEK-PEPTIEKPAANRLGSSVLDINDHEKLFSLLSTTKLIRAAAN 81
+ T+ +AV P L+F ++ PEP + P LD++D +LFS + T+ L+R+ A
Sbjct: 27 TVTASTAVVPEILSFGQQAPEPPLHHPKPTEQSHDGLDLSDQARLFSSIPTSDLLRSTAV 86
Query: 82 LHLAAVEPLVDFGVWVMNSRLMDIDLAREVVMCTVRHSFYEHFCAGENAPEATDCVRRVN 141
LH AA+ P+VD G WVM+S+LMD + R +V+ V+ +FY+HFCAGE+A A + VR V
Sbjct: 87 LHAAAIGPMVDLGTWVMSSKLMDASVTRGMVLGLVKSTFYDHFCAGEDADAAAERVRSVY 146
Query: 142 DA-GLRGMLVYAVEHTDDVSECEQNLQGFLQTVQSAKSLPPESASFVIAKISAICPMSLL 200
+A GL+GMLVY VEH DD C+ N+Q F++T+++AKSLP S V+ KI+AICP+SLL
Sbjct: 147 EATGLKGMLVYGVEHADDAVSCDDNMQQFIRTIEAAKSLPTSHFSSVVVKITAICPISLL 206
Query: 201 QRVSDLLRWQQRDPSFNLPWKLNNFPLFSDCSPLYHTLQKPEPLTLQEENELQSAHQRLQ 260
+RVSDLLRW+ + P+F L WKL +FP+FS+ SPLYHT +PEPLT +EE EL++AH R+Q
Sbjct: 207 KRVSDLLRWEYKSPNFKLSWKLKSFPVFSESSPLYHTNSEPEPLTAEEERELEAAHGRIQ 266
Query: 261 KLCQECLEANVPLTVDAEDTFVQPAIDYLTYNAALS-NNKAGKPIVYNTIQAYLKDAKER 319
++C++C E+NVPL +DAEDT +QPAIDY+ Y++A+ N +PIVYNTIQAYL+DA ER
Sbjct: 267 EICRKCQESNVPLLIDAEDTILQPAIDYMAYSSAIMFNADKDRPIVYNTIQAYLRDAGER 326
Query: 320 LFLATEAAEKMGVPMGFKLVRGAYMSSESKLAASLGFDSPIHNSIQETHACYNDCASYML 379
L LA + AEK VPMGFKLVRGAYMSSE+ LA SLG SP+H++IQ+TH+CYNDC ++++
Sbjct: 327 LHLAVQNAEKENVPMGFKLVRGAYMSSEASLADSLGCKSPVHDTIQDTHSCYNDCMTFLM 386
Query: 380 EKIADGSG-AVVLATHNVESGQLAAAKATDLGI-KGDQKLEFAQLYGMAEALSYGLRNAG 437
EK ++GSG VVLATHN +SG+LA+ KA+DLGI K + K+EFAQLYGM++ALS+GL+ AG
Sbjct: 387 EKASNGSGFGVVLATHNADSGRLASRKASDLGIDKQNGKIEFAQLYGMSDALSFGLKRAG 446
Query: 438 FQVSKYMPFGPVDKIIPYLLRRAEENRGFLSASNLDRQLMRKELMRRVNAAV 489
F VSKYMPFGPV IPYLLRRA ENRG ++ DRQLMR EL RR+ A +
Sbjct: 447 FNVSKYMPFGPVATAIPYLLRRAYENRGMMATGAHDRQLMRMELKRRLIAGI 498
>sp|Q86H28|PROD_DICDI Proline dehydrogenase 1, mitochondrial OS=Dictyostelium discoideum
GN=prodh PE=3 SV=1
Length = 572
Score = 201 bits (512), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 126/387 (32%), Positives = 215/387 (55%), Gaps = 29/387 (7%)
Query: 116 VRHSFYEHFCAGENAPEATDCVRRVNDAGLRGMLVYAVEHTDDVSECEQNL-QGFLQTVQ 174
+++SF++ FCAGE E ++N G+ +L YA+E SE ++ + +T++
Sbjct: 197 IKYSFFKQFCAGETIRETEIFTEKLNKLGIGTILDYAIEELAGSSEGFDSVAENICETIR 256
Query: 175 SAKSLPPESASFVIAKISAICPMSLLQRVSDLLRWQQRDPSFNLPWKLNNFPLFSDCSPL 234
A P + SF K + + S+L++++ L+ N+ ++ P+ S SPL
Sbjct: 257 VAAKNP--TNSFSCVKFTGLVTPSVLEKMNTLVS--------NVTTNVSELPIESFNSPL 306
Query: 235 YHTL--------QKPEPL-TLQEENELQSAHQRLQKLCQECLEANVPLTVDAEDTFVQPA 285
L Q EPL T ++ E++ R+ K+ Q C + VP+ VDAE ++ Q A
Sbjct: 307 DFYLNQSSSLMKQGSEPLLTSKDIKEIKEFFNRMDKIFQLCHQRGVPILVDAEQSYYQVA 366
Query: 286 IDYLTYNAALSNNKAGKPIVYNTIQAYLKDAKERL--FLATEAAEKMGVPMGFKLVRGAY 343
I +LT + ++ NK KPI+YNT Q YL + L +++K +G K+VRGAY
Sbjct: 367 IHHLTMSYSIKYNKE-KPIIYNTYQMYLVNGMNVLKQHFELSSSQKFNFKLGAKIVRGAY 425
Query: 344 MSSESKLAASLGFDSPIHNSIQETHACYNDCASYMLEKIAD--GSGAVVLATHNVESGQL 401
M +ES+ + L ++P+ +IQ+TH YN ++L +I S +++A+HN +S L
Sbjct: 426 MVTESERSQRLSTENPVLPTIQDTHKSYNTALDFLLNQIKSDPNSIGLMIASHNEDSINL 485
Query: 402 AAAKATDLGIK-GDQKLEFAQLYGMAEALSYGLRNAGFQVSKYMPFGPVDKIIPYLLRRA 460
I + ++F QL+GMA+ LS+ L + ++ KY+PFGPV++++PYL+RR
Sbjct: 486 GTKLIKQYKIDPTNPNIQFGQLFGMADFLSFNLVDQHQRIFKYVPFGPVEEVLPYLIRRM 545
Query: 461 EENRGFLSASNLDRQL--MRKELMRRV 485
EN+GF+ SN D++L ++KE+ RR+
Sbjct: 546 HENKGFI-GSNSDKELFYLKKEIKRRL 571
>sp|Q9UF12|PROD2_HUMAN Probable proline dehydrogenase 2 OS=Homo sapiens GN=PRODH2 PE=2
SV=1
Length = 536
Score = 181 bits (458), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 144/435 (33%), Positives = 214/435 (49%), Gaps = 28/435 (6%)
Query: 67 FSLLSTTKLIRAAANLHLAAVEPLVDFGVWV--MNSRLMDIDLAREVVMCTVRHSFYEHF 124
F L T +L RA L L A PLV G+ + + RL+ L+ + R S Y F
Sbjct: 105 FHLKGTGELTRALLVLRLCAWPPLVTHGLLLQAWSRRLLGSRLSGAFL----RASVYGQF 160
Query: 125 CAGENAPEATDCVRRVNDAGLRGMLVYAVEHTDDVSE------CEQNLQGFLQTVQSAKS 178
AGE A E CV+++ LR +L E D + E NL L+ V ++
Sbjct: 161 VAGETAEEVKGCVQQLRTLSLRPLLAVPTEEEPDSAAKSGEAWYEGNLGAMLRCVDLSRG 220
Query: 179 L--PPE--SASFVIAKISAICPMSLLQRVSDLLRWQQRDPSFNLPWKLNNFPLFSDCSPL 234
L PP AS + K++A+ L + +L W +R P +L D
Sbjct: 221 LLEPPSLAEASLMQLKVTALTSTRLCK---ELASWVRR-PGASLELSPERLAEAMDSG-- 274
Query: 235 YHTLQKPEPLTLQEENELQSAHQRLQKLCQECLEANVPLTVDAEDTFVQPAIDYLTYNAA 294
LQ L ++ L+++ RL ++ Q +V L VDAE T + PA+ L A
Sbjct: 275 -QNLQV-SCLNAEQNQHLRASLSRLHRVAQYARAQHVRLLVDAEYTSLNPALSLLVAALA 332
Query: 295 LSNNKAGK--PIVYNTIQAYLKDAKERLFLATEAAEKMGVPMGFKLVRGAYMSSESKLAA 352
+ N G+ P V+NT QA LKD ERL EAA + G+ G KLVRGAY+ E +A
Sbjct: 333 VRWNSPGEGGPWVWNTYQACLKDTFERLGRDAEAAHRAGLAFGVKLVRGAYLDKERAVAQ 392
Query: 353 SLGFDSPIHNSIQETHACYNDCASYMLEKIADGSGA--VVLATHNVESGQLAAAKATDLG 410
G + P + T Y+ C ML +A +++A+HN ES + A + +LG
Sbjct: 393 LHGMEDPTQPDYEATSQSYSRCLELMLTHVARHGPMCHLMVASHNEESVRQATKRMWELG 452
Query: 411 IKGDQKLEFAQLYGMAEALSYGLRNAGFQVSKYMPFGPVDKIIPYLLRRAEENRGFLSAS 470
I D + F QL GM + +S L AG+ V K +P+G ++++IPYL+RRA+ENR L +
Sbjct: 453 IPLDGTVCFGQLLGMCDHVSLALGQAGYVVYKSIPYGSLEEVIPYLIRRAQENRSVLQGA 512
Query: 471 NLDRQLMRKELMRRV 485
+++L+ +EL RR+
Sbjct: 513 RREQELLSQELWRRL 527
>sp|A6QQ74|PROD2_BOVIN Probable proline dehydrogenase 2 OS=Bos taurus GN=PRODH2 PE=2 SV=1
Length = 461
Score = 180 bits (456), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 137/430 (31%), Positives = 212/430 (49%), Gaps = 28/430 (6%)
Query: 67 FSLLSTTKLIRAAANLHLAAVEPLVDFGVWV--MNSRLMDIDLAREVVMCTVRHSFYEHF 124
F L S +L RA L L A PLV G+ + + RL+ L+ ++ R S Y F
Sbjct: 29 FHLKSIGELTRALLVLRLCAWPPLVTHGLALQAWSQRLLGSRLSGALL----RASIYGQF 84
Query: 125 CAGENAPEATDCVRRVNDAGLRGMLVYAVEHTDDVS------ECEQNLQGFLQTVQSAKS 178
AGE A E CV ++ + GLR +L E D + E NL L+ V ++
Sbjct: 85 VAGETAEEVRSCVLQLQNLGLRPLLAVPTEEEPDSAVKTGEAWYEGNLSAMLRCVDLSRG 144
Query: 179 L----PPESASFVIAKISAICPMSLLQRVSDLLRWQQRDPSFNLPWKLNNFPLFSDCSPL 234
L P + + K++A+ L ++++ +R P +L D
Sbjct: 145 LLETPDPTGNALMQLKMTALMSTRLCKQLTSWVR----RPGDSLELSPERLAEAMDSG-- 198
Query: 235 YHTLQKPEPLTLQEENELQSAHQRLQKLCQECLEANVPLTVDAEDTFVQPAIDYLTYNAA 294
LQ L ++ LQ++ RL ++ Q V L VDAE T + PA+ L A
Sbjct: 199 -QDLQV-SCLNTEQTRHLQASLSRLHRVVQHARAQRVRLLVDAEYTSLNPALSLLVAALA 256
Query: 295 LSNNKAGK--PIVYNTIQAYLKDAKERLFLATEAAEKMGVPMGFKLVRGAYMSSESKLAA 352
N +G+ P V+NT QAYLKD ERL EAA++ G+ G KLVRGAY+ E + A
Sbjct: 257 TRWNSSGEGGPWVWNTYQAYLKDTYERLRWDAEAADRAGLAFGVKLVRGAYLDKERETAR 316
Query: 353 SLGFDSPIHNSIQETHACYNDCASYMLEKIADGSGA--VVLATHNVESGQLAAAKATDLG 410
G + P + T Y+ C ML +++ +++A+HN +S + A + +LG
Sbjct: 317 LQGTEDPTQPDYEATSQSYSRCLELMLTQVSHRGPMCHLMVASHNEDSVRQATKRMWELG 376
Query: 411 IKGDQKLEFAQLYGMAEALSYGLRNAGFQVSKYMPFGPVDKIIPYLLRRAEENRGFLSAS 470
I D + F QL GM + +S L AG+ V K +P+G ++++IPYL+RRA+ENR L +
Sbjct: 377 IPPDGPVCFGQLLGMCDHVSLALGQAGYAVYKSIPYGSLEEVIPYLIRRAQENRSVLRGA 436
Query: 471 NLDRQLMRKE 480
+++L+ +E
Sbjct: 437 RREQELLSQE 446
>sp|Q9WU79|PROD_MOUSE Proline dehydrogenase 1, mitochondrial OS=Mus musculus GN=Prodh
PE=2 SV=2
Length = 599
Score = 179 bits (453), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 98/255 (38%), Positives = 153/255 (60%), Gaps = 7/255 (2%)
Query: 242 EPL----TLQEENELQSAHQRLQKLCQECLEANVPLTVDAEDTFVQPAIDYLTYNAALSN 297
EPL T +EE +++ QR+ L ++ EA V L +DAE ++ QPAI LT
Sbjct: 341 EPLLSRFTEEEEQQMKRMLQRMDVLAKKAKEAGVRLMIDAEQSYFQPAISRLTLEMQRRF 400
Query: 298 NKAGKPIVYNTIQAYLKDAKERLFLATEAAEKMGVPMGFKLVRGAYMSSESKLAASLGFD 357
N KP ++NT Q YLKDA + + L E A + G G KLVRGAYM+ E AA +G++
Sbjct: 401 N-VDKPFIFNTFQCYLKDAYDNVTLDMELARREGWCFGAKLVRGAYMAQERVRAAEIGYE 459
Query: 358 SPIHNSIQETHACYNDCASYMLEKIADGSGA-VVLATHNVESGQLAAAKATDLGIK-GDQ 415
PI+ + + T+A Y+ C +Y+LE++ + A V++A+HN ++ + ++G+ D
Sbjct: 460 DPINPTYEATNAMYHRCLNYVLEELKHSTKAEVMVASHNEDTVHFTLCRMKEIGLHPADG 519
Query: 416 KLEFAQLYGMAEALSYGLRNAGFQVSKYMPFGPVDKIIPYLLRRAEENRGFLSASNLDRQ 475
++ F QL GM + +S+ L AGF V KY+P+GPV +++PYL RRA EN + + +RQ
Sbjct: 520 QVCFGQLLGMCDQISFPLGQAGFPVYKYVPYGPVMEVLPYLSRRALENSSIMKGAQRERQ 579
Query: 476 LMRKELMRRVNAAVM 490
L+ +EL RR+ +
Sbjct: 580 LLWQELRRRLRTGSL 594
>sp|Q8VCZ9|PROD2_MOUSE Probable proline dehydrogenase 2 OS=Mus musculus GN=Prodh2 PE=2
SV=1
Length = 456
Score = 173 bits (438), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 148/444 (33%), Positives = 221/444 (49%), Gaps = 46/444 (10%)
Query: 67 FSLLSTTKLIRAAANLHLAAVEPLVDFGV----WVMNSRLMDIDLAREVVMCTVRHSFYE 122
F + T +L RA L L A PLV G+ W + RL+ L+ ++ R S Y
Sbjct: 29 FHVKGTAELARALLVLRLCAWPPLVTHGLAFQAW--SQRLLGSRLSGALL----RASIYG 82
Query: 123 HFCAGENAPEATDCVRRVNDAGLRGMLVYAVEHTDD----VSEC--EQNLQGFLQTVQSA 176
F AGE A E +CV ++ GL+ +L E D SE E+NL L+ V +
Sbjct: 83 QFVAGETAEEVRNCVGQLQALGLQPLLAVPTEEEPDSTAKTSEVWYEENLSAMLRCVDLS 142
Query: 177 KSL----PPESASFVIAKISAICPMSLLQRVSDLLRWQQRDPSFNLPWKLNNFPLFSDCS 232
++L P S + K++A+ L + +S W QR P + S+ S
Sbjct: 143 RALVDAHGPARNSLMQLKVTALASTRLCKELSA---WIQR-PRGS-----------SELS 187
Query: 233 P--LYHTLQKPEPLTLQ----EENE-LQSAHQRLQKLCQECLEANVPLTVDAEDTFVQPA 285
P L + L L E+N+ LQ++ RL ++ Q V L VDAE TF+ PA
Sbjct: 188 PERLAEAMDSGRNLQLSCLSTEQNQHLQASLSRLHRVAQHARAKCVRLLVDAEYTFINPA 247
Query: 286 IDYLTYNAALSNN--KAGKPIVYNTIQAYLKDAKERLFLATEAAEKMGVPMGFKLVRGAY 343
+ L A+ N + G P V+NT QAYLKD +RL EAA K G+ G KLVRGAY
Sbjct: 248 LSLLVAALAVRWNSPEEGGPWVWNTYQAYLKDTHQRLEQDAEAAHKAGLAFGVKLVRGAY 307
Query: 344 MSSESKLAASLGFDSPIHNSIQETHACYNDCASYMLEKIADGSGA--VVLATHNVESGQL 401
+ E + G + + T Y+ C ML +++ +++A+HN ES +
Sbjct: 308 LDKERSMTQLQGKEDCTQPDYEATSRSYSRCLELMLRCVSNHGPPCHLMVASHNEESVRQ 367
Query: 402 AAAKATDLGIKGDQKLEFAQLYGMAEALSYGLRNAGFQVSKYMPFGPVDKIIPYLLRRAE 461
A + +LGI D + F QL GM + +S L AG+ V K +P+G ++++IPYL+RRA+
Sbjct: 368 ATKRMWELGIPLDGPVCFGQLLGMCDHVSLALGQAGYMVYKSIPYGCLEEVIPYLIRRAQ 427
Query: 462 ENRGFLSASNLDRQLMRKELMRRV 485
ENR L + ++ L+ +EL RR+
Sbjct: 428 ENRSVLQGARREQALLSQELWRRL 451
>sp|Q148G5|PROD_BOVIN Proline dehydrogenase 1, mitochondrial OS=Bos taurus GN=PRODH PE=2
SV=1
Length = 593
Score = 172 bits (435), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 96/250 (38%), Positives = 149/250 (59%), Gaps = 14/250 (5%)
Query: 242 EPL----TLQEENELQSAHQRLQKLCQECLEANVPLTVDAEDTFVQPAIDYLTYNAALSN 297
EPL T +EE ++ QR+ L ++ + V L VDAE T+ QPAI LT
Sbjct: 342 EPLLSQFTEEEERQMTRMLQRMDVLAKKANQVGVRLMVDAEQTYFQPAISRLTLEMQRRF 401
Query: 298 NKAGKPIVYNTIQAYLKDAKERLFLATEAAEKMGVPMGFKLVRGAYMSSESKLAASLGFD 357
N +P+++NT Q YL+DA + + L E A + G G KLVRGAYM A +G++
Sbjct: 402 N-VERPLIFNTFQCYLRDAYDNVILDVELARREGWCFGAKLVRGAYM-------AQVGYE 453
Query: 358 SPIHNSIQETHACYNDCASYMLEKIA-DGSGAVVLATHNVESGQLAAAKATDLGIK-GDQ 415
PI+ + + T A Y+ C Y+LE++ + AV++A+HN ++ + + +LG+ D+
Sbjct: 454 DPINPTYEATSAVYHRCLDYVLEELKHNARAAVMVASHNEDTVRFTLRRMEELGLHPADR 513
Query: 416 KLEFAQLYGMAEALSYGLRNAGFQVSKYMPFGPVDKIIPYLLRRAEENRGFLSASNLDRQ 475
++ F QL GM + +S+ L AGF V KY+P+GPV +++PYL RRA EN G + + +RQ
Sbjct: 514 QVYFGQLLGMCDHISFPLGQAGFPVYKYVPYGPVMEVLPYLSRRALENSGVMKGAQRERQ 573
Query: 476 LMRKELMRRV 485
L+ +EL RR+
Sbjct: 574 LLWQELKRRL 583
>sp|Q2V057|PROD2_RAT Probable proline dehydrogenase 2 OS=Rattus norvegicus GN=Prodh2
PE=2 SV=1
Length = 456
Score = 169 bits (428), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 141/437 (32%), Positives = 220/437 (50%), Gaps = 32/437 (7%)
Query: 67 FSLLSTTKLIRAAANLHLAAVEPLVDFGV----WVMNSRLMDIDLAREVVMCTVRHSFYE 122
F L T +L RA L L A PLV G+ W + RL+ L+ ++ R S Y
Sbjct: 29 FHLKRTAELARALLVLRLCAWPPLVTHGLAFQAW--SQRLLGSRLSGALL----RASIYG 82
Query: 123 HFCAGENAPEATDCVRRVNDAGLRGMLVYAVEHTDD----VSEC--EQNLQGFLQTVQSA 176
F AGE A E CV+++ GL+ +L E D SE E NL L V +
Sbjct: 83 QFVAGETAEEVRGCVQQLQAIGLQPLLAVPTEEEPDSAAKTSEAWYEGNLSAMLHCVDLS 142
Query: 177 KSLP----PESASFVIAKISAICPMSLLQRVSDLLRWQQRDPSFNLPWKLNNFPLFSDCS 232
+++ P S + K++A+ L + +S ++ + R S P +L ++
Sbjct: 143 RAVADAHGPARNSLMQLKVTALTSPRLCKELSAWIQ-RPRGSSELRPERL------AEAM 195
Query: 233 PLYHTLQKPEPLTLQEENELQSAHQRLQKLCQECLEANVPLTVDAEDTFVQPAIDYLTYN 292
LQ L+ ++ LQ++ RL ++ Q +V L VDAE TF+ PA+ L
Sbjct: 196 ESGRNLQL-SCLSTEQNQHLQASLSRLHRVAQHARAQDVRLLVDAEYTFINPALSLLVAA 254
Query: 293 AA--LSNNKAGKPIVYNTIQAYLKDAKERLFLATEAAEKMGVPMGFKLVRGAYMSSESKL 350
A L +++ P V+NT QAYLKD ERL +AA + G+ G KLVRGAY+ E +
Sbjct: 255 LAMRLDSSEEEGPWVWNTYQAYLKDTHERLERDAKAAHEAGLAFGVKLVRGAYLDKERSV 314
Query: 351 AASLGFDSPIHNSIQETHACYNDCASYMLEKIADGS--GAVVLATHNVESGQLAAAKATD 408
G + + T Y+ C ML ++++ +++A+HN ES + A + +
Sbjct: 315 TQLHGKEDCTQPDYEATSRSYSRCLELMLRRVSNHGPRCHLMVASHNEESIRQATRRMWE 374
Query: 409 LGIKGDQKLEFAQLYGMAEALSYGLRNAGFQVSKYMPFGPVDKIIPYLLRRAEENRGFLS 468
LGI D + F QL GM + +S L AG+ V K +P+G ++++IPYL+RRA+ENR L
Sbjct: 375 LGIPLDGPVCFGQLLGMCDHVSLALGQAGYMVYKSIPYGCLEEVIPYLIRRAQENRSVLQ 434
Query: 469 ASNLDRQLMRKELMRRV 485
+ ++ L+ +EL RR+
Sbjct: 435 GARREQALLSQELWRRL 451
>sp|O43272|PROD_HUMAN Proline dehydrogenase 1, mitochondrial OS=Homo sapiens GN=PRODH
PE=1 SV=3
Length = 600
Score = 166 bits (420), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 94/236 (39%), Positives = 141/236 (59%), Gaps = 7/236 (2%)
Query: 242 EPL--TLQEENELQSAH--QRLQKLCQECLEANVPLTVDAEDTFVQPAIDYLTYNAALSN 297
EPL EE ELQ QR+ L ++ E V L VDAE T+ QPAI LT
Sbjct: 342 EPLLSRFTEEEELQMTRMLQRMDVLAKKATEMGVRLMVDAEQTYFQPAISRLTLEMQRKF 401
Query: 298 NKAGKPIVYNTIQAYLKDAKERLFLATEAAEKMGVPMGFKLVRGAYMSSESKLAASLGFD 357
N KP+++NT Q YLKDA + + L E A + G G KLVRGAY++ E AA +G++
Sbjct: 402 N-VEKPLIFNTYQCYLKDAYDNVTLDVELARREGWCFGAKLVRGAYLAQERARAAEIGYE 460
Query: 358 SPIHNSIQETHACYNDCASYMLEKIADGSGA-VVLATHNVESGQLAAAKATDLGIK-GDQ 415
PI+ + + T+A Y+ C Y+LE++ + A V++A+HN ++ + A + +LG+ D
Sbjct: 461 DPINPTYEATNAMYHRCLDYVLEELKHNAKAKVMVASHNEDTVRFALRRMEELGLHPADH 520
Query: 416 KLEFAQLYGMAEALSYGLRNAGFQVSKYMPFGPVDKIIPYLLRRAEENRGFLSASN 471
++ F QL GM + +S+ L AG+ V KY+P+GPV +++PYL RRA EN + ++
Sbjct: 521 QVYFGQLLGMCDQISFPLGQAGYPVYKYVPYGPVMEVLPYLSRRALENSSLMKGTH 576
>sp|O45228|PROD_CAEEL Proline dehydrogenase 1, mitochondrial OS=Caenorhabditis elegans
GN=B0513.5 PE=3 SV=2
Length = 616
Score = 158 bits (400), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 87/251 (34%), Positives = 147/251 (58%), Gaps = 5/251 (1%)
Query: 242 EPLTLQEENELQSAHQRLQKLCQECLEANVPLTVDAEDTFVQPAIDYLTYNAALSNNKAG 301
+ L+ +EE E ++ +R + + +E V + VDAE T++QPAI +T NK G
Sbjct: 357 QNLSNEEEQEFRNMVRRTLDVAEYAIEKGVRIMVDAEQTYLQPAISKITIEMMKKYNK-G 415
Query: 302 KPIVYNTIQAYLKDAKERLFLATEAAEKMGVPMGFKLVRGAYMSSESKLAASLGFDSPIH 361
+ ++NT QAYLK + + + A + G G KLVRGAYM E A ++G++ PI+
Sbjct: 416 RGNIFNTYQAYLKGTLQNMEADMQVARREGWHFGAKLVRGAYMEQERARAKAIGYEDPIN 475
Query: 362 NSIQETHACYNDCASYMLEKI---ADGSGAVVLATHNVESGQLAAAKATDLGIKGDQKLE 418
++ + T Y C + + +++ + +V++A+HN ++ + A + I +++
Sbjct: 476 DNFEATSKMYESCLTRIADEVHRRGKTNVSVMVASHNEDTVRFALNLMKEKCISPSERVM 535
Query: 419 -FAQLYGMAEALSYGLRNAGFQVSKYMPFGPVDKIIPYLLRRAEENRGFLSASNLDRQLM 477
AQLYGM + +S+ L AGF V KY+P+GPV++++PYL RRA EN L +N +R L+
Sbjct: 536 CMAQLYGMCDQVSFSLGQAGFSVYKYLPYGPVEEVLPYLSRRALENGSVLKKANKERDLL 595
Query: 478 RKELMRRVNAA 488
KEL RR+++
Sbjct: 596 WKELKRRISSG 606
Score = 52.4 bits (124), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 56/104 (53%), Gaps = 5/104 (4%)
Query: 51 NRLGSSVLDINDHEKLFSLLSTTKLIRAAANLHLAAVEPLVDFGVWVMNSRLMDIDLARE 110
NRL L + ++ F S T+L+RA L L ++ LV+ ++N+ M L +
Sbjct: 55 NRLD---LSFENTKEAFKSKSNTELVRALVVLRLCGIQTLVNQNQIILNT--MRRVLGKN 109
Query: 111 VVMCTVRHSFYEHFCAGENAPEATDCVRRVNDAGLRGMLVYAVE 154
+ T++++F+ HF AGE E V ++ + G++ +L Y+VE
Sbjct: 110 LFKKTLKNTFFGHFVAGETEEEVRHVVEKLRNYGVKSILDYSVE 153
>sp|Q6PAY6|PROD2_XENLA Probable proline dehydrogenase 2 OS=Xenopus laevis GN=prodh2 PE=2
SV=1
Length = 466
Score = 158 bits (399), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 120/385 (31%), Positives = 183/385 (47%), Gaps = 33/385 (8%)
Query: 107 LAREVVMCTVRHSFYEHFCAGENAPEATDCVRRVNDAGLRGMLVYAVEHTDDVSECEQNL 166
L R + ++ S Y F AGE PE CV R+ G+ ML +E +D+ + +
Sbjct: 88 LGRRLFEWGMKGSVYGQFVAGETLPEIRVCVDRLRQLGIHPMLAVPIE--EDLGQAKSGE 145
Query: 167 QGFLQTVQSAKSLPPESAS-----FVIAKISAICPMSLLQRVSDLLRWQQRDPSFNLPWK 221
+ + Q SA+ + KI+A+ L + LL PS
Sbjct: 146 RWYEQNESIMLDCVDLSAAGGDRPMMQLKITALMSAELCK----LLSVHLSHPS------ 195
Query: 222 LNNFPLFSDCSPLYHTLQKPEPLTLQEENE---LQSAHQRLQKLCQECLEANVPLTVDAE 278
N P S + K + E E L+++ +RL ++ + V + VDAE
Sbjct: 196 --NGPQLCPRSIVSIMEGKESAFSFLSEGENSHLRNSVRRLSRIAKHATANRVRVLVDAE 253
Query: 279 DTFVQPAIDYLTYNAALSNNKAGKPIVYNTIQAYLKDAKERLFLATEAAEKMGVPMGFKL 338
T++ PA+ +T A +S +P ++NT Q YLKD+ L L + A +G+ G KL
Sbjct: 254 YTYMNPALSLVTM-AMMSQCNQSEPWIWNTYQCYLKDSFSLLSLDLDTARSLGLCFGVKL 312
Query: 339 VRGAYMSSESKLAASLGFDSPIHNSIQETHACYNDCASYMLEKIADGSGA--VVLATHNV 396
VRGAYM E KL+ G+ PI + + T+ Y ML+ I +++A+HN
Sbjct: 313 VRGAYMDKERKLSKQKGYADPIQHDWEATNRSYQRSLDKMLDLIGQNGQRHNLIVASHNE 372
Query: 397 ESGQLAAAKATDLGI-KGDQKLEFAQLYGMAEALSYGLRNAGFQVSKYMPFGPVDKIIPY 455
ES A + +LGI KG + F QL GM + +S L AG+ V K +P+G VD ++PY
Sbjct: 373 ESVLHAVTRMAELGIDKGSGSVSFGQLLGMCDHVSLTLGQAGYLVYKSLPYGSVDSVLPY 432
Query: 456 LLRRAEENRGFLSASNLDRQLMRKE 480
L+RRA+EN+ L Q +RKE
Sbjct: 433 LIRRAQENQSVL-------QGIRKE 450
>sp|Q04499|PROD_DROME Proline dehydrogenase 1, mitochondrial OS=Drosophila melanogaster
GN=slgA PE=1 SV=2
Length = 681
Score = 149 bits (376), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 92/288 (31%), Positives = 150/288 (52%), Gaps = 25/288 (8%)
Query: 218 LPWKLNNFPLFSDCSPLYHTLQKPEPLTLQ-----------EENELQSAHQRLQKLCQEC 266
PW + + S L T + P+P T Q EE ++ +RL + +
Sbjct: 383 FPWS----GIVDEDSQLSDTFRVPDPQTGQMRRLISQIPPKEEEMFRNMIRRLNTIVKAA 438
Query: 267 LEANVPLTVDAEDTFVQPAIDYLTYNAALSNNKAGKPIVYNTIQAYLKDAKERLFLATEA 326
+ +V + VDAE T+ QPAI +T NK K IV+NT Q YL++ + E
Sbjct: 439 ADLDVRIMVDAEQTYFQPAISRITLEMMRKYNK-DKAIVFNTYQCYLRETFREVNTDLEQ 497
Query: 327 AEKMGVPMGFKLVRGAYMSSESKLAASLGFDSPIHNSIQETHACYNDCASYMLEKIA--- 383
A++ G KLVRGAYM E A SLG+ P++ + + T Y+ S L +I
Sbjct: 498 AKRQNFYFGAKLVRGAYMDQERDRAKSLGYPDPVNPTFEATTDMYHRTLSECLRRIKLMK 557
Query: 384 --DGSG---AVVLATHNVESGQLAAAKATDLGIKGDQK-LEFAQLYGMAEALSYGLRNAG 437
D +++A+HN ++ + A + ++GI + K + F QL GM + +++ L AG
Sbjct: 558 DCDDDARKIGIMVASHNEDTVRFAIQQMKEIGISPEDKVICFGQLLGMCDYITFPLGQAG 617
Query: 438 FQVSKYMPFGPVDKIIPYLLRRAEENRGFLSASNLDRQLMRKELMRRV 485
+ KY+P+GPV++++PYL RRA+EN+G L +++L+ E+ RR+
Sbjct: 618 YSAYKYIPYGPVEEVLPYLSRRAQENKGVLKKIKKEKRLLLSEIRRRL 665
Score = 47.0 bits (110), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 61/119 (51%), Gaps = 4/119 (3%)
Query: 58 LDINDHEKLFSLLSTTKLIRAAANLHLAAVEPLVDFGVWVMNSRLMDIDLAREVVMCTVR 117
+ ND F +T +LIRA + + E LV+ + +M +L L +++ + ++
Sbjct: 116 VSFNDPIAAFKSKTTGELIRAYLVYMICSSEKLVEHNMTLM--KLARNLLGQKLFVLLMK 173
Query: 118 HSFYEHFCAGENAPEATDCVRRVNDAGLRGMLVYAVEHTDDVSECEQNLQGFLQTVQSA 176
SFY HF AGEN + R+ G++ +L Y+VE +D+++ E + +V SA
Sbjct: 174 SSFYGHFVAGENRHTIVPALERLRSFGVKPILDYSVE--EDITQEEAEKREVESSVSSA 230
>sp|O74524|PROD_SCHPO Probable proline dehydrogenase, mitochondrial
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPCC70.03c PE=3 SV=1
Length = 492
Score = 130 bits (326), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 133/460 (28%), Positives = 197/460 (42%), Gaps = 58/460 (12%)
Query: 63 HEKLFSLLSTTKLIRAAANLHLAAVEPLVDFGVWVMNSRLMDIDLAREVVMCTVRHSFYE 122
H LFS+L R+A + + LV + M+ L D+ + R++FY+
Sbjct: 53 HRSLFSVL------RSAFVYEICSRAWLVKLSLGAMS--LCDVFHLSFLYNPFCRYTFYK 104
Query: 123 HFCAGENAPEATDCVRRVNDAGLRGMLVYAVEHTDD------------------VSECEQ 164
HFC GE + + AG+ L Y+ E D E+
Sbjct: 105 HFCGGETPQAVMATMDTLQAAGITSCLNYSREVDLDGDMDVNKIASQGVVPPQVPVPSEK 164
Query: 165 NLQGFLQTVQSAKSLPPESASFVIAKISAICPMSLLQRVSDLLRWQQRDPSFNLPWKLNN 224
N + Q A K +C + L ++ L+ QR S LN
Sbjct: 165 NQKVLRQIADKAFESNMHIIDMATYKPGTVCAVKLTPFINPLV--LQRYNSI-----LNQ 217
Query: 225 FPLFSDCSPLYHTLQKPEPLTLQEENELQSAHQRLQKLCQECLEANVPLTVDAEDTFVQP 284
+P+ S C+ L H L+ PE L+ E +EL+ + KLCQ E +PL +DAE T+ Q
Sbjct: 218 YPVESACNYLEH-LKSPE-LSTYEVSELKKFWEYADKLCQFAKEKQIPLFIDAEQTYFQD 275
Query: 285 AIDYLTYNAALSNNKAGKPIVYNTIQAYLKDAKERLFLATEAAEKMGVPMGFKLVRGAYM 344
+ +T + NK IV+NT Q YLK +++ + + G MG KLVRGAY+
Sbjct: 276 CMHAVTVDLMRKYNKE-VAIVHNTYQLYLKKSRKIMDDHIKKCVAEGWLMGAKLVRGAYL 334
Query: 345 SSE-------SKLAASLGFDSPIHNSIQETHACYNDCASYMLEKIAD--GSGAVVLATHN 395
+SE +K FDS + I + + IA G +++A+HN
Sbjct: 335 NSEPRFLIHDTKAETDKDFDSAVEAIIAAAAKFAPGDPASASDPIASRKGKWGIMVASHN 394
Query: 396 ----VESGQLAAAKATDLGIKGDQKLEFAQLYGMAE----ALSYGLRNA--GFQVSKYMP 445
ES LA K D AQL GMA+ AL+Y RN F + KY+
Sbjct: 395 KKTMFESVNLAETKKVDFT---KTSFYLAQLLGMADDITYALAYSQRNQQPNFCIVKYVS 451
Query: 446 FGPVDKIIPYLLRRAEENRGFLSASNLDRQLMRKELMRRV 485
GP+ +++PYL+RRA EN L +R R+ L RR+
Sbjct: 452 CGPISEVLPYLVRRARENIDALDRCKEERAYYRQALRRRI 491
>sp|Q9XB58|CARD_PECCC Carbapenem antibiotics biosynthesis protein CarD OS=Pectobacterium
carotovorum subsp. carotovorum GN=carD PE=3 SV=1
Length = 376
Score = 117 bits (294), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 100/365 (27%), Positives = 166/365 (45%), Gaps = 54/365 (14%)
Query: 124 FCAGENAPEATDCVRRVNDAGLRGMLVYAVEHTDDVSECEQNLQGFLQTVQSAKSLPPES 183
+ GE E + +G+ +L YAVE +D ++ ++ ++ L+ ++ ++ +S
Sbjct: 59 YFGGETLEEVQSTATFLARSGIACVLDYAVEGENDETQFDKAMENTLRLIEMSQQ--TDS 116
Query: 184 ASFVIAKISAICPMSLLQRVSDLLRWQQRDPSFNLPWKLNNFPLFSDCSPLYHTLQKPEP 243
FV+ K S++ +++ R S+ L + S W
Sbjct: 117 LPFVVIKPSSLGSVAVYARQSERLALDEASAS---AWS---------------------- 151
Query: 244 LTLQEENELQSAHQRLQKLCQECLEANVPLTVDAEDTFVQPAIDYLTYNAALSNNKAGKP 303
R +L V + VDAE T +QPA+D L + N+
Sbjct: 152 ----------RIVTRFSRLFDYARSHGVHVMVDAEQTAIQPAVDRLVLDMMREFNR-DSA 200
Query: 304 IVYNTIQAYLKDAKERLFLATEAAEKMGVPMGFKLVRGAYMSSESKLAASLGFDSPIHNS 363
++ T+Q YLKD L + A + G K+VRGAY+ E ++ + +
Sbjct: 201 VITLTLQFYLKDQLRFLDECYQRACQDNFLFGVKVVRGAYLEEEKRVNGGV----RCFAT 256
Query: 364 IQETHACYNDCASYM---LEKIADGSGAVVLATHNVESGQLAAAKATDLGIKGDQKLEFA 420
QET YN Y+ L++IA ATHN ES LA +++ G +
Sbjct: 257 KQETDRSYNAAVDYIALRLDRIAP-----FFATHNEES--LALIMSSESLRAG--RTWVG 307
Query: 421 QLYGMAEALSYGLRNAGFQVSKYMPFGPVDKIIPYLLRRAEENRGFLSASNLDRQLMRKE 480
QLYG+ + ++Y L GF+V KY+P+GP+DK +PYLLRR EEN + + +L++KE
Sbjct: 308 QLYGLGDHITYSLLQTGFRVCKYLPYGPLDKSLPYLLRRIEENAVASATFKKENKLLQKE 367
Query: 481 LMRRV 485
L+RR+
Sbjct: 368 LLRRL 372
>sp|P09368|PUT1_YEAST Proline dehydrogenase, mitochondrial OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=PUT1 PE=1 SV=2
Length = 476
Score = 77.8 bits (190), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 111/467 (23%), Positives = 188/467 (40%), Gaps = 91/467 (19%)
Query: 45 IEKPAANRLGSSVLDINDHEKLFSLLSTTKLIRAAANLHLAAVEPLVDFGVWVMNSRLMD 104
+E PAAN G+SV+ + L +L + L G+ +NS ++
Sbjct: 43 VETPAANANGNSVMAPPNSINFLQTLPKKELFQ------------LGFIGIATLNSFFLN 90
Query: 105 --IDLAREVVMCTVRHSFYEHFCAGENAPEATDCVRRVNDAGLRGMLV-YAVEHTDDV-- 159
I L + + ++ +C GEN E +C +R+ G+ M++ +E+++
Sbjct: 91 TIIKLFPYIPIPVIKFFVSSLYCGGENFKEVIECGKRLQKRGISNMMLSLTIENSEGTKS 150
Query: 160 ---SECEQNLQGFLQTVQS-----------AKSLPPESASFVIAKISAIC--PMSLLQRV 203
+ +Q ++ + +V + +K + + ++ K SA+ P +L
Sbjct: 151 LSSTPVDQIVKETISSVHNILLPNIIGQLESKPINDIAPGYIALKPSALVDNPHEVLYNF 210
Query: 204 SDLLRWQQRDPSFNLPWKLNNFPLFSDCSPLYHTLQKPEPLTLQEENELQSAHQRLQKLC 263
S+ QRD L +CS + +E EL Q L
Sbjct: 211 SNPAYKAQRDQ------------LIENCSKI-----------TKEIFELN------QSLL 241
Query: 264 QECLEANVPL---TVDAEDTFVQPAIDYLTYNAALS--NNKAGKPI-VYNTIQAYLKDAK 317
++ E P T+DAE +Q Y N + K I T Q YL+D+
Sbjct: 242 KKYPERKAPFMVSTIDAEKYDLQENGVYELQRILFQKFNPTSSKLISCVGTWQLYLRDSG 301
Query: 318 ERLFLATEAAEKMGVPMGFKLVRGAYMSSES---------KLAASLGFDSPIHNSIQETH 368
+ + + A++ G +G KLVRGAY+ SE K +D I + +
Sbjct: 302 DHILHELKLAQENGYKLGLKLVRGAYIHSEKNRNQIIFGDKTGTDENYDRIITQVVND-- 359
Query: 369 ACYNDCASYMLEKIADGSGAVVLATHNVESGQLAA--AKATDLGIKGDQKLEFAQLYGMA 426
N SY G +V+A+HN +S L K+T + QL GMA
Sbjct: 360 LIINGEDSYF--------GHLVVASHNYQSQMLVTNLLKSTQDNSYAKSNIVLGQLLGMA 411
Query: 427 EALSYGL-RNAGFQ-VSKYMPFGPVDKIIPYLLRRAEENRGFLSASN 471
+ ++Y L N G + + KY+P+GP + YLLRR +EN + + N
Sbjct: 412 DNVTYDLITNHGAKNIIKYVPWGPPLETKDYLLRRLQENGDAVRSDN 458
>sp|P95629|PUTA_RHIML Bifunctional protein PutA OS=Rhizobium meliloti GN=putA PE=3 SV=1
Length = 1224
Score = 43.1 bits (100), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 62/217 (28%), Positives = 93/217 (42%), Gaps = 23/217 (10%)
Query: 258 RLQKLCQECLEANVPLTVDAEDT-FVQPAIDYLTYNAALSNNKAGKPIVYNTIQAYLKDA 316
R++ L ++ L +DAE+ ++ ++D L L + +G + +QAY K
Sbjct: 283 RVKALALLAKNYDIGLNIDAEEADRLELSLDLLEV-LCLDGDLSGWNGMGFVVQAYGKRC 341
Query: 317 KERLFLATEAAEKMGVPMGFKLVRGAYMSSESKLAASLGF-DSPIHNSIQETHACYNDCA 375
L + A + G + +LV+GAY +E K A G D P+ T + D
Sbjct: 342 PFVLDFIIDLARRSGRRIMVRLVKGAYWDAEIKRAQLDGLADFPVF-----TRKIHTDV- 395
Query: 376 SYMLEKIA---DGSGAVVLATHNVESGQLAAA---KATDLGIKGDQKLEFAQLYGMAEAL 429
SYM A D G ATHN ++ LAA D + K EF L+GM E L
Sbjct: 396 SYMPRTQAACRDRCGVPQFATHNAQT--LAAIYHMAGKDFHVG---KYEFQCLHGMGEPL 450
Query: 430 SYGLRNAG---FQVSKYMPFGPVDKIIPYLLRRAEEN 463
+ G Y P G + ++ YL+RR EN
Sbjct: 451 YEEVVGRGKLDRPCRIYAPVGTHETLLAYLVRRLLEN 487
>sp|P94390|PROD2_BACSU Proline dehydrogenase 2 OS=Bacillus subtilis (strain 168) GN=ycgM
PE=3 SV=1
Length = 303
Score = 40.4 bits (93), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 49/213 (23%), Positives = 90/213 (42%), Gaps = 30/213 (14%)
Query: 251 ELQSAHQRLQKLCQECLEANVPLTVDAEDTF-VQPAIDYLTYNAALSNNKAGKPIVYNTI 309
++ ++ + K+ Q + + +T+D ED Q +D + + V +
Sbjct: 105 DMDLVYENMTKILQTAEKHKIMVTIDMEDEVRCQKTLD------IFKDFRKKYEHVSTVL 158
Query: 310 QAYLKDAKERLFLATEAAEKMGVPMGFKLVRGAYMSSESKLAASLGFDSPIHNSIQETHA 369
QAYL ++ + + + + P +LV+GAY SE K+A P + + E +
Sbjct: 159 QAYLYRTEKDI----DDLDSLN-PF-LRLVKGAYKESE-KVAF------PEKSDVDENYK 205
Query: 370 CYNDCASYMLEKIADGSGAVVLATHNVESGQLAAAKATDLGIKGDQKLEFAQLYGMAEAL 429
+ +++ +G +ATH+ + A + GI D K EF LYGM
Sbjct: 206 ------KIIRKQLLNGH-YTAIATHDDKMIDFTKQLAKEHGIAND-KFEFQMLYGMRSQT 257
Query: 430 SYGLRNAGFQVSKYMPFGPVDKIIPYLLRRAEE 462
L G+ + Y+P+G + Y +RR E
Sbjct: 258 QLSLVKEGYNMRVYLPYG--EDWYGYFMRRLAE 288
>sp|P10503|PUTA_SALTY Bifunctional protein PutA OS=Salmonella typhimurium (strain LT2 /
SGSC1412 / ATCC 700720) GN=putA PE=2 SV=4
Length = 1320
Score = 40.4 bits (93), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 60/231 (25%), Positives = 98/231 (42%), Gaps = 25/231 (10%)
Query: 247 QEENELQSAHQRLQKLCQECLEANVPLTVDAEDT-FVQPAIDYLTYNAALSNNKAGKPIV 305
Q + ++ + RL+ L + ++ L +DAE+ ++ ++D L AG +
Sbjct: 341 QYDRVMEELYPRLKSLTLLARQYDIGLNIDAEEADRLEISLDLLE-KLCFEPELAGWNGI 399
Query: 306 YNTIQAYLKDAKERLFLATEAAEKMGVPMGFKLVRGAYMSSESKLAASLGFDS-PIHNSI 364
IQAY K + + A + + +LV+GAY SE K A G + P++
Sbjct: 400 GFVIQAYQKRCPLVIDYLVDLASRSRRRLMIRLVKGAYWDSEIKRAQMEGLEGYPVYTRK 459
Query: 365 QETHACYNDCASYMLEKIADGSGAV------VLATHNVESGQLAAAKATDLGIKGDQKLE 418
T Y CA +L AV ATHN + LAA + E
Sbjct: 460 VYTDVSYLACAKKLL--------AVPNLIYPQFATHNAHT--LAAIYHLAGQNYYPGQYE 509
Query: 419 FAQLYGMAEALSYGL--RNAGFQVSK----YMPFGPVDKIIPYLLRRAEEN 463
F L+GM E L + + A ++++ Y P G + ++ YL+RR EN
Sbjct: 510 FQCLHGMGEPLYEQVTGKVADGKLNRPCRIYAPVGTHETLLAYLVRRLLEN 560
>sp|P09546|PUTA_ECOLI Bifunctional protein PutA OS=Escherichia coli (strain K12) GN=putA
PE=1 SV=3
Length = 1320
Score = 39.3 bits (90), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 59/231 (25%), Positives = 99/231 (42%), Gaps = 25/231 (10%)
Query: 247 QEENELQSAHQRLQKLCQECLEANVPLTVDAEDT-FVQPAIDYLTYNAALSNNKAGKPIV 305
Q + ++ + RL+ L + ++ + +DAE++ ++ ++D L AG +
Sbjct: 341 QYDRVMEELYPRLKSLTLLARQYDIGINIDAEESDRLEISLDLLE-KLCFEPELAGWNGI 399
Query: 306 YNTIQAYLKDAKERLFLATEAAEKMGVPMGFKLVRGAYMSSESKLAASLGFDS-PIHNSI 364
IQAY K + + A + + +LV+GAY SE K A G + P++
Sbjct: 400 GFVIQAYQKRCPLVIDYLIDLATRSRRRLMIRLVKGAYWDSEIKRAQMDGLEGYPVYTRK 459
Query: 365 QETHACYNDCASYMLEKIADGSGAV------VLATHNVESGQLAAAKATDLGIKGDQKLE 418
T Y CA +L AV ATHN + LAA + E
Sbjct: 460 VYTDVSYLACAKKLL--------AVPNLIYPQFATHNAHT--LAAIYQLAGQNYYPGQYE 509
Query: 419 FAQLYGMAEALSYGL--RNAGFQVSK----YMPFGPVDKIIPYLLRRAEEN 463
F L+GM E L + + A ++++ Y P G + ++ YL+RR EN
Sbjct: 510 FQCLHGMGEPLYEQVTGKVADGKLNRPCRIYAPVGTHETLLAYLVRRLLEN 560
>sp|O52485|PUTA_ENTAE Bifunctional protein PutA OS=Enterobacter aerogenes GN=putA PE=3
SV=1
Length = 1312
Score = 39.3 bits (90), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 59/231 (25%), Positives = 98/231 (42%), Gaps = 25/231 (10%)
Query: 247 QEENELQSAHQRLQKLCQECLEANVPLTVDAEDT-FVQPAIDYLTYNAALSNNKAGKPIV 305
Q + ++ + RL+ L + ++ + +DAE+ ++ ++D L AG +
Sbjct: 341 QYDRVMEELYPRLKSLTLLARQYDIGINIDAEEADRLEISLDLLE-KLCFEPELAGWNGI 399
Query: 306 YNTIQAYLKDAKERLFLATEAAEKMGVPMGFKLVRGAYMSSESKLAASLGFDS-PIHNSI 364
IQAY K + + A + + +LV+GAY SE K A G + P++
Sbjct: 400 GFVIQAYQKRCPFVIDYLIDLATRSRRRLMIRLVKGAYWDSEIKRAQMEGLEGYPVYTRK 459
Query: 365 QETHACYNDCASYMLEKIADGSGAV------VLATHNVESGQLAAAKATDLGIKGDQKLE 418
T Y CA +L AV ATHN + LAA + E
Sbjct: 460 VYTDVSYLACAKKLL--------AVPNLIYPQFATHNAHT--LAAIYQLAGQNYYPGQYE 509
Query: 419 FAQLYGMAEALSYGL--RNAGFQVSK----YMPFGPVDKIIPYLLRRAEEN 463
F L+GM E L + + A ++++ Y P G + ++ YL+RR EN
Sbjct: 510 FQCLHGMGEPLYEQVVGKVADGKLNRPCRIYAPVGTHETLLAYLVRRLLEN 560
>sp|Q8L2I5|PROD2_BACNA Proline dehydrogenase 2 OS=Bacillus subtilis subsp. natto PE=3 SV=1
Length = 304
Score = 38.9 bits (89), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 48/213 (22%), Positives = 90/213 (42%), Gaps = 30/213 (14%)
Query: 251 ELQSAHQRLQKLCQECLEANVPLTVDAEDTF-VQPAIDYLTYNAALSNNKAGKPIVYNTI 309
++ ++ + K+ Q + + +T+D ED Q +D + + V +
Sbjct: 106 DMDLVYENMTKILQTAEKHKIMVTIDMEDEVRCQKTLD------IFKDFRKKYEHVSTVL 159
Query: 310 QAYLKDAKERLFLATEAAEKMGVPMGFKLVRGAYMSSESKLAASLGFDSPIHNSIQETHA 369
QAYL ++ + + + + P +LV+GAY SE K+A P + + E +
Sbjct: 160 QAYLYRTEKDI----DDLDSLN-PF-LRLVKGAYKESE-KVAF------PEKSDVDENYK 206
Query: 370 CYNDCASYMLEKIADGSGAVVLATHNVESGQLAAAKATDLGIKGDQKLEFAQLYGMAEAL 429
+ +++ +G +ATH+ + A + GI D K EF LYGM
Sbjct: 207 ------KIIRKQLLNGH-YTAIATHDDKMIDFTKQLAKEHGIAND-KFEFQMLYGMRSQT 258
Query: 430 SYGLRNAGFQVSKYMPFGPVDKIIPYLLRRAEE 462
L G+ + ++P+G + Y +RR E
Sbjct: 259 QLSLVKEGYNMRVFLPYG--EDWYGYFMRRLAE 289
>sp|B2JGP7|KTHY_BURP8 Thymidylate kinase OS=Burkholderia phymatum (strain DSM 17167 /
STM815) GN=tmk PE=3 SV=1
Length = 206
Score = 37.0 bits (84), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 47 KPAANRLGSSVLDINDHEKLFSLLSTTKLIRAAANLHLAAV-EPLVDFGVWVMNSRLMDI 105
+P +LG S+ DI HE + L + L+ AA HLA V EP + G WV++ R D
Sbjct: 44 EPGGTKLGESLRDILLHEAM-DLETEALLMFAARREHLAQVIEPALARGDWVLSDRFTDA 102
Query: 106 DLA 108
A
Sbjct: 103 TFA 105
>sp|O32179|PROD1_BACSU Proline dehydrogenase 1 OS=Bacillus subtilis (strain 168) GN=fadM
PE=2 SV=1
Length = 302
Score = 34.7 bits (78), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 76/203 (37%), Gaps = 46/203 (22%)
Query: 270 NVPLTVDAEDTFVQPAIDYLTYNAALSNNKAGK---PIVYNTIQAYLKDAKERLFLATEA 326
+V +T+D ED Y Y LS + K + IQAYL + A E
Sbjct: 123 DVAVTIDMED--------YSHYEQTLSIYRQCKQEFEKLGTVIQAYL-------YRAAED 167
Query: 327 AEKM-GVPMGFKLVRGAYMSSES-----KLAASLGFDSPIHNSIQETHACYNDCASYMLE 380
KM + +LV+GAY S + K L F S I +Q Y A++ +
Sbjct: 168 IRKMRDLKPNLRLVKGAYKESAAVAFPDKRGTDLHFQSLI--KLQLLSGNYTAVATHDDD 225
Query: 381 KIADGSGAVVLATHNVESGQLAAAKATDLGIKGDQKLEFAQLYGMAEALSYGLRNAGFQV 440
IA V A H + + Q EF LYG+ L G+++
Sbjct: 226 IIAFTKQLV--AEHQIPASQF----------------EFQMLYGIRPERQKELAKEGYRM 267
Query: 441 SKYMPFGPVDKIIPYLLRRAEEN 463
Y+P+G Y +RR E
Sbjct: 268 RVYVPYGT--DWFSYFMRRIAER 288
>sp|A6SZH9|KTHY_JANMA Thymidylate kinase OS=Janthinobacterium sp. (strain Marseille)
GN=tmk PE=3 SV=1
Length = 204
Score = 34.7 bits (78), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 3/89 (3%)
Query: 22 NSASTTSISAVSPLNFDEKPEPTIEK-PAANRLGSSVLDINDHEKLFSLLSTTKLIRAAA 80
+ +T +S V+ L + K + + P LG + +I HEK+ L + L+ AA
Sbjct: 14 GAGKSTHLSFVAELLCERKKTVVVTREPGGTSLGEELREILLHEKM-HLETEALLMFAAR 72
Query: 81 NLHLAAV-EPLVDFGVWVMNSRLMDIDLA 108
H+A V P ++ G WV++ R D A
Sbjct: 73 REHIAQVIAPALERGDWVISDRFTDATFA 101
>sp|Q5JER0|MTAD_PYRKO 5-methylthioadenosine/S-adenosylhomocysteine deaminase
OS=Pyrococcus kodakaraensis (strain ATCC BAA-918 / JCM
12380 / KOD1) GN=mtaD PE=3 SV=1
Length = 424
Score = 33.9 bits (76), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 140 VNDAGLRGMLVYAVEHTDDVSECEQNLQGFLQTVQSAKSLPPESASFVIAKISA-ICPMS 198
V DAGLRG L Y + D E+ L+ L+ +++ + L E FV + C ++
Sbjct: 130 VLDAGLRGYLSYGMIDLGDPDRTEKELKEALREMEAIEKLNSERVHFVFGPHAPYTCSIA 189
Query: 199 LLQRVSDL 206
LL+ V L
Sbjct: 190 LLKEVRKL 197
>sp|Q471X9|KTHY_CUPPJ Thymidylate kinase OS=Cupriavidus pinatubonensis (strain JMP134 /
LMG 1197) GN=tmk PE=3 SV=1
Length = 203
Score = 33.9 bits (76), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 5/91 (5%)
Query: 22 NSASTTSISAVSPLNFDEKPEP---TIEKPAANRLGSSVLDINDHEKLFSLLSTTKLIRA 78
+ +T I AV+ + K P T +P LG + I H K+ L + L+ A
Sbjct: 13 GAGKSTHIGAVAARLRERKDIPAVVTTREPGGTPLGEDLRQILLHRKM-HLETEALLMFA 71
Query: 79 AANLHLAAV-EPLVDFGVWVMNSRLMDIDLA 108
A H+A V EP + G WV++ R D A
Sbjct: 72 ARREHIAEVIEPALARGDWVISDRFTDATFA 102
>sp|Q8BGD7|NPAS4_MOUSE Neuronal PAS domain-containing protein 4 OS=Mus musculus GN=Npas4
PE=1 SV=1
Length = 802
Score = 33.5 bits (75), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 60/140 (42%), Gaps = 11/140 (7%)
Query: 245 TLQEENELQSAHQRLQKLCQECLEANVPLTVDAEDTFVQPAIDYLTYNAALSNNKAGKPI 304
T +E+NE+ Q++ +L Q + P + +A ++P N LS + AG P+
Sbjct: 625 TEKEQNEIDRLIQQISQLAQG---VDRPFSAEAGTGGLEPLGGLEPLNPNLSLSGAGPPV 681
Query: 305 VYNTIQA-------YLKDAKERLFLATEAAEKMGVPMGFKLVRGAYMSSESKLAASLGFD 357
+ ++ +L D + LFL E + + + G + S + + G
Sbjct: 682 LSLDLKPWKCQELDFLVD-PDNLFLEETPVEDIFMDLSTPDPNGEWGSGDPEAEVPGGTL 740
Query: 358 SPIHNSIQETHACYNDCASY 377
SP +N E H+ D A+Y
Sbjct: 741 SPCNNLSPEDHSFLEDLATY 760
>sp|Q8RMG1|PROD1_BACNA Proline dehydrogenase 1 OS=Bacillus subtilis subsp. natto GN=fadM
PE=1 SV=1
Length = 302
Score = 33.5 bits (75), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 76/203 (37%), Gaps = 46/203 (22%)
Query: 270 NVPLTVDAEDTFVQPAIDYLTYNAALSNNKAGK---PIVYNTIQAYLKDAKERLFLATEA 326
+V +T+D ED Y Y LS + K + IQAYL + A E
Sbjct: 123 DVAVTIDMED--------YSHYEQTLSIYRQCKQEFEKLGTVIQAYL-------YRAAED 167
Query: 327 AEKM-GVPMGFKLVRGAYMSSES-----KLAASLGFDSPIHNSIQETHACYNDCASYMLE 380
+KM + +LV+GAY S + K L F S I +Q Y A++ +
Sbjct: 168 IKKMRDLKPNLRLVKGAYKESAAVAFPDKRGTDLHFQSLI--KLQLLSGNYTAVATHDDD 225
Query: 381 KIADGSGAVVLATHNVESGQLAAAKATDLGIKGDQKLEFAQLYGMAEALSYGLRNAGFQV 440
I V A H + + Q EF LYG+ L G+++
Sbjct: 226 IIKFTKQLV--AEHRIPASQF----------------EFQMLYGIRPERQKELAKEGYRM 267
Query: 441 SKYMPFGPVDKIIPYLLRRAEEN 463
Y+P+G Y +RR E
Sbjct: 268 RVYVPYGT--DWFSYFMRRIAER 288
>sp|Q8CJH6|NPAS4_RAT Neuronal PAS domain-containing protein 4 OS=Rattus norvegicus
GN=Npas4 PE=2 SV=1
Length = 802
Score = 33.1 bits (74), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 60/140 (42%), Gaps = 11/140 (7%)
Query: 245 TLQEENELQSAHQRLQKLCQECLEANVPLTVDAEDTFVQPAIDYLTYNAALSNNKAGKPI 304
T +E+NE+ Q++ +L Q + P + +A ++P N LS + AG P+
Sbjct: 625 TEKEQNEIDRLIQQISQLAQGM---DRPFSAEAGTGGLEPLGGLEPLNPNLSLSGAGPPV 681
Query: 305 VYNTIQA-------YLKDAKERLFLATEAAEKMGVPMGFKLVRGAYMSSESKLAASLGFD 357
+ ++ +L D + LFL E + + + G + S + + G
Sbjct: 682 LSLDLKPWKCQELDFLVD-PDNLFLEETPVEDIFMDLSTPDPNGEWGSGDPEAEVPGGTL 740
Query: 358 SPIHNSIQETHACYNDCASY 377
SP +N E H+ D A+Y
Sbjct: 741 SPCNNLSPEDHSFLEDLATY 760
>sp|Q6GGV4|DING_STAAR Probable ATP-dependent helicase DinG homolog OS=Staphylococcus
aureus (strain MRSA252) GN=dinG PE=3 SV=1
Length = 897
Score = 33.1 bits (74), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Query: 376 SYMLEKIADGSGAVVLATHNVESGQLAAAKATDLGIKGDQKL---EFAQLYGMAEALSYG 432
SY L ++A+ G + H + AK L + +KL QLY +++ L Y
Sbjct: 131 SYQLSELAEAHGITLANAHRADEDAATTAKLMILAFEKFEKLPLDTLKQLYYLSKQLKYD 190
Query: 433 LRNAGFQVSKYMPFGPVDK 451
L + F++ + P+DK
Sbjct: 191 LYDIFFEMVRQYDAKPLDK 209
>sp|Q7A5K4|DING_STAAN Probable ATP-dependent helicase DinG homolog OS=Staphylococcus
aureus (strain N315) GN=dinG PE=1 SV=1
Length = 897
Score = 33.1 bits (74), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Query: 376 SYMLEKIADGSGAVVLATHNVESGQLAAAKATDLGIKGDQKL---EFAQLYGMAEALSYG 432
SY L ++A+ G + H + AK L + +KL QLY +++ L Y
Sbjct: 131 SYQLSELAEAHGITLANAHRADEDAATTAKLMILAFEKFEKLPLDTLKQLYYLSKQLKYD 190
Query: 433 LRNAGFQVSKYMPFGPVDK 451
L + F++ + P+DK
Sbjct: 191 LYDIFFEMVRQYDAKPLDK 209
>sp|Q99U34|DING_STAAM Probable ATP-dependent helicase DinG homolog OS=Staphylococcus
aureus (strain Mu50 / ATCC 700699) GN=dinG PE=3 SV=1
Length = 897
Score = 33.1 bits (74), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Query: 376 SYMLEKIADGSGAVVLATHNVESGQLAAAKATDLGIKGDQKL---EFAQLYGMAEALSYG 432
SY L ++A+ G + H + AK L + +KL QLY +++ L Y
Sbjct: 131 SYQLSELAEAHGITLANAHRADEDAATTAKLMILAFEKFEKLPLDTLKQLYYLSKQLKYD 190
Query: 433 LRNAGFQVSKYMPFGPVDK 451
L + F++ + P+DK
Sbjct: 191 LYDIFFEMVRQYDAKPLDK 209
>sp|Q5HFW8|DING_STAAC Probable ATP-dependent helicase DinG homolog OS=Staphylococcus
aureus (strain COL) GN=dinG PE=3 SV=1
Length = 897
Score = 33.1 bits (74), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Query: 376 SYMLEKIADGSGAVVLATHNVESGQLAAAKATDLGIKGDQKL---EFAQLYGMAEALSYG 432
SY L ++A+ G + H + AK L + +KL QLY +++ L Y
Sbjct: 131 SYQLSELAEAHGITLANAHRADEDAATTAKLMILAFEKFEKLPLDTLKQLYYLSKQLKYD 190
Query: 433 LRNAGFQVSKYMPFGPVDK 451
L + F++ + P+DK
Sbjct: 191 LYDIFFEMVRQYDAKPLDK 209
>sp|Q2FYH5|DING_STAA8 Probable ATP-dependent helicase DinG homolog OS=Staphylococcus
aureus (strain NCTC 8325) GN=dinG PE=2 SV=1
Length = 897
Score = 33.1 bits (74), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Query: 376 SYMLEKIADGSGAVVLATHNVESGQLAAAKATDLGIKGDQKL---EFAQLYGMAEALSYG 432
SY L ++A+ G + H + AK L + +KL QLY +++ L Y
Sbjct: 131 SYQLSELAEAHGITLANAHRADEDAATTAKLMILAFEKFEKLPLDTLKQLYYLSKQLKYD 190
Query: 433 LRNAGFQVSKYMPFGPVDK 451
L + F++ + P+DK
Sbjct: 191 LYDIFFEMVRQYDAKPLDK 209
>sp|Q2FGY5|DING_STAA3 Probable ATP-dependent helicase DinG homolog OS=Staphylococcus
aureus (strain USA300) GN=dinG PE=3 SV=1
Length = 897
Score = 33.1 bits (74), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Query: 376 SYMLEKIADGSGAVVLATHNVESGQLAAAKATDLGIKGDQKL---EFAQLYGMAEALSYG 432
SY L ++A+ G + H + AK L + +KL QLY +++ L Y
Sbjct: 131 SYQLSELAEAHGITLANAHRADEDAATTAKLMILAFEKFEKLPLDTLKQLYYLSKQLKYD 190
Query: 433 LRNAGFQVSKYMPFGPVDK 451
L + F++ + P+DK
Sbjct: 191 LYDIFFEMVRQYDAKPLDK 209
>sp|Q8NWP2|DING_STAAW Probable ATP-dependent helicase DinG homolog OS=Staphylococcus
aureus (strain MW2) GN=dinG PE=3 SV=1
Length = 897
Score = 33.1 bits (74), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Query: 376 SYMLEKIADGSGAVVLATHNVESGQLAAAKATDLGIKGDQKL---EFAQLYGMAEALSYG 432
SY L ++A+ G + H + AK L + +KL QLY +++ L Y
Sbjct: 131 SYQLSELAEAHGITLANAHRADEDAATTAKLMILAFEKFEKLPLDTLKQLYYLSKQLKYD 190
Query: 433 LRNAGFQVSKYMPFGPVDK 451
L + F++ + P+DK
Sbjct: 191 LYDIFFEMVRQYDAKPLDK 209
>sp|Q6G9A7|DING_STAAS Probable ATP-dependent helicase DinG homolog OS=Staphylococcus
aureus (strain MSSA476) GN=dinG PE=3 SV=1
Length = 897
Score = 33.1 bits (74), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Query: 376 SYMLEKIADGSGAVVLATHNVESGQLAAAKATDLGIKGDQKL---EFAQLYGMAEALSYG 432
SY L ++A+ G + H + AK L + +KL QLY +++ L Y
Sbjct: 131 SYQLSELAEAHGITLANAHRADEDAATTAKLMILAFEKFEKLPLDTLKQLYYLSKQLKYD 190
Query: 433 LRNAGFQVSKYMPFGPVDK 451
L + F++ + P+DK
Sbjct: 191 LYDIFFEMVRQYDAKPLDK 209
>sp|Q8P276|FTSK_STRP8 DNA translocase FtsK OS=Streptococcus pyogenes serotype M18 (strain
MGAS8232) GN=ftsK PE=3 SV=1
Length = 801
Score = 32.7 bits (73), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 73/165 (44%), Gaps = 26/165 (15%)
Query: 219 PWKLNNFPLFS----DCSPLYHTLQKPEPLTLQEENELQSAHQRLQKLCQECLEANVPLT 274
PW + + F D + + K + +EE+ LQ+ + L+K QE + LT
Sbjct: 179 PWDIYDVSHFVKEAVDKLAVAYQENKEKRFIKREEHRLQTEKEALEKQAQEEEKRLAELT 238
Query: 275 VDAE-DTFVQPAIDYLTYNAALSNNKAGKPIVYNTIQAYLKDAKERLFLATEAA---EKM 330
VD E V+ + ++Y+ A K + + Y++ +LKD + LF + A EK+
Sbjct: 239 VDPETGEIVEDSQSQVSYDLAEDMTKEPEILAYDS---HLKDDEASLFDQEDLAYAHEKI 295
Query: 331 GVPMGFKLVRGAYMSSESKLAAS---LGFDSPIH-NSIQETHACY 371
GAY S S LA+S + D P+ + +TH Y
Sbjct: 296 ----------GAY-DSLSALASSEDEMDMDEPVEVDFTPKTHLLY 329
>sp|B3R181|KTHY_CUPTR Thymidylate kinase OS=Cupriavidus taiwanensis (strain R1 / LMG
19424) GN=tmk PE=3 SV=1
Length = 203
Score = 32.3 bits (72), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 5/95 (5%)
Query: 44 TIEKPAANRLGSSVLDINDHEKLFSLLSTTKLIRAAANLHLAAV-EPLVDFGVWVMNSRL 102
T +P LG + I H K+ L + L+ AA H+A V P ++ G WV++ R
Sbjct: 38 TTREPGGTSLGEDLRQILLHRKM-HLETEALLMFAARREHIAEVIAPALERGKWVISDRF 96
Query: 103 MDIDLARE---VVMCTVRHSFYEHFCAGENAPEAT 134
D A + + T R E++ G P+ T
Sbjct: 97 TDATFAYQGGGRGLATERLEVLENWVQGSLQPDLT 131
>sp|Q8CIK8|RFWD3_MOUSE E3 ubiquitin-protein ligase RFWD3 OS=Mus musculus GN=Rfwd3 PE=2
SV=1
Length = 774
Score = 32.3 bits (72), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 55/135 (40%), Gaps = 10/135 (7%)
Query: 227 LFSDCSPLYHTLQKPEPLTLQEENELQSAHQRLQKLCQECLEAN-VPLTVDAEDTFV--- 282
L C+ L +Q E ++ +N R + LC +CL ++ P +E TF
Sbjct: 387 LIDKCTKLNSRVQDLEKFVVRHQNSAAQQCSRSKALCGKCLSSSQSPGKYSSEKTFTISQ 446
Query: 283 QPAIDYLTYNAALSNNKAGKPIVYNTIQAYLKDAKERLFLATEAAEKMGVPMGFKLVRGA 342
L Y LS A +P + ++L ++ +PM K +RG
Sbjct: 447 TGKCRILAYCDGLSCLVASQP---SPQASFLPGFGVKMLSTANMKSSQYIPMHNKQIRGL 503
Query: 343 YMSSESK---LAASL 354
SS+SK L+ASL
Sbjct: 504 SFSSQSKGLLLSASL 518
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.132 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 169,425,102
Number of Sequences: 539616
Number of extensions: 6851669
Number of successful extensions: 19634
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 45
Number of HSP's that attempted gapping in prelim test: 19532
Number of HSP's gapped (non-prelim): 72
length of query: 490
length of database: 191,569,459
effective HSP length: 122
effective length of query: 368
effective length of database: 125,736,307
effective search space: 46270960976
effective search space used: 46270960976
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)